Citrus Sinensis ID: 023126
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | 2.2.26 [Sep-21-2011] | |||||||
| Q9UTC5 | 235 | Putative uridine kinase C | yes | no | 0.679 | 0.829 | 0.355 | 3e-32 | |
| P11664 | 237 | Uncharacterized protein Y | N/A | no | 0.651 | 0.789 | 0.333 | 1e-18 | |
| C5DNG5 | 347 | ATP-dependent kinase YFH7 | yes | no | 0.644 | 0.533 | 0.285 | 3e-18 | |
| C5DXG0 | 375 | ATP-dependent kinase YFH7 | yes | no | 0.609 | 0.466 | 0.293 | 9e-18 | |
| P43591 | 353 | ATP-dependent kinase YFH7 | yes | no | 0.484 | 0.393 | 0.271 | 4e-15 | |
| C7GYB3 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.484 | 0.393 | 0.271 | 4e-15 | |
| A7A245 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.484 | 0.393 | 0.271 | 4e-15 | |
| B5VI33 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.484 | 0.393 | 0.271 | 4e-15 | |
| B3LUL5 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.484 | 0.393 | 0.271 | 4e-15 | |
| C8Z7U0 | 353 | ATP-dependent kinase YFH7 | N/A | no | 0.484 | 0.393 | 0.271 | 4e-15 |
| >sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 121/211 (57%), Gaps = 16/211 (7%)
Query: 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 138
+ R ++GLAG PG+GKSTL A + K W ++ S ++ ++PMDGFH L
Sbjct: 27 QQRVLIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSL 74
Query: 139 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196
+LD ++P++A A RGA WTF+ L + ++ ++ +YAPSFDH +GDPV DDI
Sbjct: 75 EELDRFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDIC 134
Query: 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG--KPPD 254
V +++++I +GNYL L+ W D ++D K ++ V+ A RV RH+ +G +
Sbjct: 135 VEPKNRILIFEGNYLLLNKPPWSDACKLYDIKAYLPVEHSVARARVAHRHLVSGLCATEE 194
Query: 255 VAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285
A R + ND N + K+ D+V++ +
Sbjct: 195 EAIERTDRNDMINLTFVEKNMVTPDIVLQQL 225
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8 |
| >sp|P11664|YGGC_ECOLI Uncharacterized protein YggC OS=Escherichia coli (strain K12) GN=yggC PE=4 SV=2 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 103/210 (49%), Gaps = 23/210 (10%)
Query: 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 138
+ R +V L PPG GKSTL W A D ++ P + T LPMDGFH Y
Sbjct: 41 QRRTVVFLCAPPGTGKSTLTT--------FWEYLAQQ-DPEL--PAIQT-LPMDGFHHYN 88
Query: 139 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196
S LDA + +GAP TF+ + +NLR +G P +D DPVED +
Sbjct: 89 SWLDA----HQLRPFKGAPETFD---VAKLTENLRQVVEGDCTWPQYDRQKHDPVEDALH 141
Query: 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVA 256
V +VIV+GN+L LD W +++S D FI +R++ R I+ G VA
Sbjct: 142 VTA--PLVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERLISRKIAGGLTRQVA 199
Query: 257 KWRIEYNDRPNAELIMKSKKNADLVIKSID 286
+ D PN E ++ + + A+L+++ +
Sbjct: 200 EAFYARTDGPNVERVLMNSRQANLIVEMTE 229
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 104/238 (43%), Gaps = 53/238 (22%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
+VG+ G P + R+ + P + S+ D ++ A ++PMDGFHL LD
Sbjct: 120 VVGIGGLPNS----------IRVENVAPLEPSNHDYKI-----AKIVPMDGFHLSRRHLD 164
Query: 143 AMEDPKEAHARRGAPWTFNP--------LLLLNCL--------KNLRNQG---------- 176
+DP EAH RRG+P TF+ LL C K + G
Sbjct: 165 HFDDPVEAHRRRGSPPTFDSNNCLQLCKLLAKTCTIKPTLPVNKTTADTGTLFDKISDTF 224
Query: 177 -----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK--- 228
S+Y P FDH + DP V ++++++G YL LD W+D+ F +
Sbjct: 225 SESVPSIYVPGFDHALKDPSTGQHCVDAFTRIIVLEGLYLLLDEDNWRDIYPTFKDTHAV 284
Query: 229 --WFIEVDLDTAMQRVLKRHISTGKPP--DVAKWRIEYNDRPNAELIMKSKKNADLVI 282
W +++ +D QRV KRH+ +G + R ND NA I + AD ++
Sbjct: 285 IVWKLDLGVDVLEQRVAKRHLQSGLAATLEAGVERFRMNDLINALRIKEHCLAADDIV 342
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 50/225 (22%)
Query: 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 141
I+G G P A + N + P + SSF A ++PMDGFHL L
Sbjct: 156 QILGRGGLPNAFTIS---------NDVEPDEESSF---------AQIVPMDGFHLSRQCL 197
Query: 142 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYA---------------- 180
+ ++P+EAH RRG+P TF+ K L GS A
Sbjct: 198 SSFQNPQEAHKRRGSPPTFDSNNFAQLCKTLAQTCTIKPGSCDAKSCFEFMAKTYDPHFP 257
Query: 181 ----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK-----WFI 231
P FDH + DP D + ++VI++G YL D W+ V + W+I
Sbjct: 258 CIKIPGFDHSLKDPTPDQFCLNGHTRIVILEGLYLLYDKENWQRVHEILQNTGSLLVWYI 317
Query: 232 EVDLDTAMQRVLKRHISTGKPPDVAKWRIEY--NDRPNAELIMKS 274
+++ +RV KRH ++G V + R+++ ND NA LI K+
Sbjct: 318 DIEDHVIEERVAKRHFNSGLADSVEQGRLKFQGNDLLNARLIRKN 362
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 176
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 177 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 215 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain JAY291) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 176
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 177 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQKIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 215 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain JAY291) (taxid: 574961) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain YJM789) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 176
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 177 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 215 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain YJM789) (taxid: 307796) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 176
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 177 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 215 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|B3LUL5|YFH7_YEAS1 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 176
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 177 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 215 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
| >sp|C8Z7U0|YFH7_YEAS8 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=YFH7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 34/173 (19%)
Query: 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 176
++A ++PMDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213
Query: 177 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214
++ P F+H + DP D + ++VI++G YL D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 215 GGVWKDVSSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
WK + + + I++D + +RV KRH+ +G +A+ R ++
Sbjct: 274 QENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKF 326
|
ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly. Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (taxid: 643680) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | ||||||
| 255559925 | 312 | ATP binding protein, putative [Ricinus c | 0.993 | 0.913 | 0.681 | 1e-117 | |
| 449452236 | 309 | PREDICTED: putative uridine kinase C227. | 0.878 | 0.815 | 0.667 | 1e-106 | |
| 225437219 | 312 | PREDICTED: putative uridine kinase C227. | 0.993 | 0.913 | 0.636 | 1e-105 | |
| 224082738 | 231 | predicted protein [Populus trichocarpa] | 0.721 | 0.896 | 0.840 | 1e-101 | |
| 356572241 | 309 | PREDICTED: ATP-dependent kinase YFH7-lik | 0.965 | 0.896 | 0.592 | 2e-97 | |
| 297843102 | 301 | phosphoribulokinase/uridine kinase [Arab | 0.951 | 0.906 | 0.619 | 6e-95 | |
| 42561642 | 301 | P-loop containing nucleoside triphosphat | 0.958 | 0.913 | 0.603 | 4e-94 | |
| 357157235 | 322 | PREDICTED: putative uridine kinase C227. | 0.766 | 0.683 | 0.690 | 6e-90 | |
| 115489442 | 315 | Os12g0601200 [Oryza sativa Japonica Grou | 0.766 | 0.698 | 0.668 | 3e-87 | |
| 326508064 | 322 | predicted protein [Hordeum vulgare subsp | 0.829 | 0.739 | 0.598 | 5e-87 |
| >gi|255559925|ref|XP_002520981.1| ATP binding protein, putative [Ricinus communis] gi|223539818|gb|EEF41398.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/314 (68%), Positives = 245/314 (78%), Gaps = 29/314 (9%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGK-TRSLV 59
M+VSSLS T RAC S +TES LKR PS H +S S +R + Q +F + T V
Sbjct: 1 MEVSSLSITSRACPFSPATESLLLKRIRRPSLHQCLVSISLNKRTS--QSLFSRQTGPTV 58
Query: 60 QNKTSLKVLCSQRREIPVVEA--------------------------RHIVGLAGPPGAG 93
+ S+KVLCS RR++PVVEA +HIVGLAGPPGAG
Sbjct: 59 FKENSIKVLCSLRRDVPVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAG 118
Query: 94 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 153
KST+A+EVVRR+NKIWPQKASSFDSQVKPPDVA VLPMDGFHLY SQLDAME+P EAHAR
Sbjct: 119 KSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPDEAHAR 178
Query: 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213
RGAPWTF+P LLL CLK LRN+GSVYAPSFDHGVGDPVEDDI V LQHKV+IV+GNYL L
Sbjct: 179 RGAPWTFSPTLLLECLKKLRNEGSVYAPSFDHGVGDPVEDDIFVSLQHKVIIVEGNYLLL 238
Query: 214 DGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK 273
G WKD+SSMFDEKW+I+VD+DTAM+RVLKRHISTGKPPDVAKWRI+YNDRPNAELI+K
Sbjct: 239 GEGAWKDISSMFDEKWYIDVDIDTAMERVLKRHISTGKPPDVAKWRIDYNDRPNAELIIK 298
Query: 274 SKKNADLVIKSIDI 287
S+KNADL+I+SI+
Sbjct: 299 SRKNADLIIRSINF 312
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452236|ref|XP_004143866.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/280 (66%), Positives = 217/280 (77%), Gaps = 28/280 (10%)
Query: 34 HGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEAR------------ 81
H FLSF+ + + G+T + + V CSQ+RE VVE R
Sbjct: 32 HNFLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCIDDIYDDLARR 89
Query: 82 --------------HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127
+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS DSQV P DVA
Sbjct: 90 LLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMDSQVNPADVAA 149
Query: 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 187
VLPMDGFHLY SQLD+ME+P+EAHARRGAPWTFNP LLL CLK LR+QGSVYAPSFDHGV
Sbjct: 150 VLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGSVYAPSFDHGV 209
Query: 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 247
GDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEKWF+E+D+D +M+RVLKRHI
Sbjct: 210 GDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEKWFVEIDIDKSMERVLKRHI 269
Query: 248 STGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 287
STGKPPDVAKWRIEYNDRPNAELIMKSKKNADL+I+S+D
Sbjct: 270 STGKPPDVAKWRIEYNDRPNAELIMKSKKNADLLIRSVDF 309
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437219|ref|XP_002281875.1| PREDICTED: putative uridine kinase C227.14 [Vitis vinifera] gi|297735493|emb|CBI17933.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/314 (63%), Positives = 239/314 (76%), Gaps = 29/314 (9%)
Query: 1 MDVSSLSTTPRACLSSSST-ESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLV 59
M+V+S ST+ + SSSS+ E L++ ++P + + S RR+ QP+FG TRS
Sbjct: 1 MEVASFSTSSQGFWSSSSSSELFLLRKVKVPITYRCSVLNSPTRRSV--QPLFGGTRSQF 58
Query: 60 QNKTSLKVLCSQRREIPVVEAR--------------------------HIVGLAGPPGAG 93
++ LKV CSQ+ EIPVV+ R IVGLAGPPGAG
Sbjct: 59 GRESCLKVSCSQKGEIPVVDGRCMDEIYDTLAERLLPTAAVASNPNLKRIVGLAGPPGAG 118
Query: 94 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 153
KSTLA+EV R+NK+WPQKASSFDSQV PPDVA VLPMDGFHLY QLDAMEDP+EAHAR
Sbjct: 119 KSTLASEVAWRVNKLWPQKASSFDSQVGPPDVAAVLPMDGFHLYRHQLDAMEDPEEAHAR 178
Query: 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213
RGAPWTF+P LL CLK LR++GSVYAPSFDHGVGDPVEDDI + LQHKVVIV+GNYL L
Sbjct: 179 RGAPWTFDPTRLLTCLKRLRHEGSVYAPSFDHGVGDPVEDDIFISLQHKVVIVEGNYLLL 238
Query: 214 DGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMK 273
G WK+VSSMFDEKWFIEVD++T+M+RV+KRH+STGKPPD+AKWRIEYNDRPNAELI+K
Sbjct: 239 QEGDWKEVSSMFDEKWFIEVDINTSMERVVKRHVSTGKPPDIAKWRIEYNDRPNAELIIK 298
Query: 274 SKKNADLVIKSIDI 287
SK+NADLVI+S++
Sbjct: 299 SKRNADLVIRSVNF 312
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082738|ref|XP_002306820.1| predicted protein [Populus trichocarpa] gi|222856269|gb|EEE93816.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/207 (84%), Positives = 193/207 (93%)
Query: 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 140
++IV LAGPPGAGKSTLA+E+V R+N++WPQKASSFD QVKPPDVA VLPMDGFHLY SQ
Sbjct: 25 KYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSFDLQVKPPDVAAVLPMDGFHLYRSQ 84
Query: 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 200
LDAME+P+EAHARRGAPWTF+P LLL CL+ LRN+GSVYAPSFDHGVGDPVEDDI V LQ
Sbjct: 85 LDAMENPEEAHARRGAPWTFSPTLLLRCLEKLRNEGSVYAPSFDHGVGDPVEDDIFVSLQ 144
Query: 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 260
HKVVIV+GNYL L+ G WKDVSSMFDEKWFI+VD+DTAMQRVLKRHISTGKPPDVAKWRI
Sbjct: 145 HKVVIVEGNYLLLEDGAWKDVSSMFDEKWFIDVDIDTAMQRVLKRHISTGKPPDVAKWRI 204
Query: 261 EYNDRPNAELIMKSKKNADLVIKSIDI 287
EYND+PNAELI+KSKKNADLVI+SID
Sbjct: 205 EYNDQPNAELIIKSKKNADLVIRSIDF 231
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572241|ref|XP_003554278.1| PREDICTED: ATP-dependent kinase YFH7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 189/319 (59%), Positives = 220/319 (68%), Gaps = 42/319 (13%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHHGFLSFSWIRRNANAQPVFGK 54
M+ + STT R + + + PL R PS S S R + Q +
Sbjct: 1 MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54
Query: 55 TRSLVQNKTSLKVLCSQRREIPVVEARHI--------------------------VGLAG 88
TR + KVL +++ +I VVE + VGLAG
Sbjct: 55 TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110
Query: 89 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 148
PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170
Query: 149 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208
EAHARRGAPWTFNPL LL CLKNLR GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230
Query: 209 NYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNA 268
NYL L+ GVWK++SS+FDEKWFI++D+D AMQRVLKRHISTGKPPD+AK RIE NDR NA
Sbjct: 231 NYLLLEDGVWKEISSLFDEKWFIDIDIDKAMQRVLKRHISTGKPPDIAKQRIENNDRLNA 290
Query: 269 ELIMKSKKNADLVIKSIDI 287
ELIMKSKKNAD++IKSID
Sbjct: 291 ELIMKSKKNADIIIKSIDF 309
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843102|ref|XP_002889432.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] gi|297335274|gb|EFH65691.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 353 bits (905), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 195/315 (61%), Positives = 227/315 (72%), Gaps = 42/315 (13%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
M+VSS ST PR C S S EL S GF W Q + S +
Sbjct: 1 MEVSSFSTVPRYCNSRSFV-------AEL-SRFRGFNVHLW------DQSLVPLHLSFRK 46
Query: 61 NKTSLKVL--CSQRREIPVVEA--------------------------RHIVGLAGPPGA 92
KT+ + L CSQ++++ VV+ + +VGLAGPPGA
Sbjct: 47 RKTTPRFLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGA 106
Query: 93 GKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152
GKSTLA EVVRR+NK+WPQKASSFD++VKP DVA VLPMDGFHLY SQLDAMEDPKEAHA
Sbjct: 107 GKSTLANEVVRRVNKLWPQKASSFDAEVKPSDVAIVLPMDGFHLYRSQLDAMEDPKEAHA 166
Query: 153 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 212
RRGAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+
Sbjct: 167 RRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYIL 226
Query: 213 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIM 272
L+ G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+
Sbjct: 227 LEEGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELII 286
Query: 273 KSKKNADLVIKSIDI 287
KSK NADL+I+S++I
Sbjct: 287 KSKTNADLLIRSVNI 301
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42561642|ref|NP_171802.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|63147412|gb|AAY34179.1| At1g03030 [Arabidopsis thaliana] gi|108385285|gb|ABF85769.1| At1g03030 [Arabidopsis thaliana] gi|110737366|dbj|BAF00628.1| hypothetical protein [Arabidopsis thaliana] gi|332189396|gb|AEE27517.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 189/313 (60%), Positives = 224/313 (71%), Gaps = 38/313 (12%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
M+VSS ST PR C S S S GF W + + P+ R +
Sbjct: 1 MEVSSFSTVPRYCNSRSFVPEL--------SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48
Query: 61 NKTSLKVLCSQRREIPVVEA--------------------------RHIVGLAGPPGAGK 94
N + CSQ++++ VV+ + +VGLAGPPGAGK
Sbjct: 49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108
Query: 95 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 154
ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168
Query: 155 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214
GAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228
Query: 215 GGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKS 274
G WKD+S MFDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+KS
Sbjct: 229 EGSWKDISDMFDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKS 288
Query: 275 KKNADLVIKSIDI 287
K NADL+I+S++I
Sbjct: 289 KTNADLLIRSMNI 301
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357157235|ref|XP_003577730.1| PREDICTED: putative uridine kinase C227.14-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 152/220 (69%), Positives = 186/220 (84%)
Query: 68 LCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127
L S +++ +++++IVGLAGPPGAGKST+A+EVVRR+N W +K ++ S + D+AT
Sbjct: 101 LLSVLKDVDHLDSKYIVGLAGPPGAGKSTVASEVVRRVNMHWSKKHATDSSLISNEDIAT 160
Query: 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 187
+LPMDGFHLY SQLDAMEDPKEAHARRGAPWTFNP L LNCLK LR +GSVYAPSFDHGV
Sbjct: 161 MLPMDGFHLYRSQLDAMEDPKEAHARRGAPWTFNPSLFLNCLKTLRKEGSVYAPSFDHGV 220
Query: 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 247
GDPVE+DI V QHK+VIV+GNYL L+ +W+D+ MFDEKWFIE+D+D +MQRVL+RHI
Sbjct: 221 GDPVENDIFVKPQHKIVIVEGNYLLLEENIWRDIRGMFDEKWFIEIDIDVSMQRVLQRHI 280
Query: 248 STGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 287
TGK PDVA WRI YNDRPNAELIM+S+K+ADLVI+S+D
Sbjct: 281 GTGKEPDVAAWRISYNDRPNAELIMQSRKDADLVIRSVDF 320
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115489442|ref|NP_001067208.1| Os12g0601200 [Oryza sativa Japonica Group] gi|108862925|gb|ABA99791.2| phosphoribulokinase/uridine kinase family protein, putative, expressed [Oryza sativa Japonica Group] gi|113649715|dbj|BAF30227.1| Os12g0601200 [Oryza sativa Japonica Group] gi|215765522|dbj|BAG87219.1| unnamed protein product [Oryza sativa Japonica Group] gi|218187194|gb|EEC69621.1| hypothetical protein OsI_39000 [Oryza sativa Indica Group] gi|222617418|gb|EEE53550.1| hypothetical protein OsJ_36764 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 327 bits (839), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 147/220 (66%), Positives = 185/220 (84%)
Query: 68 LCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127
L S + I +++++IVG+AGPPGAGKST+A+EVV+R+NK W QK + S + ++AT
Sbjct: 94 LFSVLKNIEHLDSKYIVGIAGPPGAGKSTVASEVVQRVNKRWSQKHENGSSLISTEEIAT 153
Query: 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 187
+LPMDGFHLY SQLDAMEDPKEAHARRGAPWTF+P L CL+ LR +GSVYAPSFDHGV
Sbjct: 154 MLPMDGFHLYRSQLDAMEDPKEAHARRGAPWTFDPSRFLKCLQTLREEGSVYAPSFDHGV 213
Query: 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI 247
GDPVE+DI V QHK+VIV+GNYL L+ W+D+ ++FDEKWFI++D+D +MQRVL+RH+
Sbjct: 214 GDPVENDIFVKPQHKIVIVEGNYLLLEEDAWRDIRALFDEKWFIDIDIDVSMQRVLQRHV 273
Query: 248 STGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 287
+TGK PDVA WRI YNDRPNAELIMKSKK+ADLVI+S+D+
Sbjct: 274 ATGKEPDVAAWRISYNDRPNAELIMKSKKSADLVIRSVDL 313
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326508064|dbj|BAJ86775.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 158/264 (59%), Positives = 191/264 (72%), Gaps = 26/264 (9%)
Query: 49 QPVFGKTRSLVQNKTSLKVLCSQRREIPVVEAR--------------------------H 82
QP F + + K V C QR+ P +EA+ +
Sbjct: 56 QPAFHQPVTRATWKKKHNVTCYQRQGAPQIEAKSMEEVYDALAEHLLSALKSIDNLDSKY 115
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
IVGLAGPPGAGKST+A+EVVRR+NK W QK + S D+AT+LPMDGFHLY SQLD
Sbjct: 116 IVGLAGPPGAGKSTVASEVVRRVNKRWSQKHAKDGSPNSDEDIATMLPMDGFHLYRSQLD 175
Query: 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202
AMEDPKEAHARRGAPWTFNP L L CL+ L+ +GSVYAPSFDHGVGDPVE+DI V QHK
Sbjct: 176 AMEDPKEAHARRGAPWTFNPSLFLKCLQILKEEGSVYAPSFDHGVGDPVENDIFVKPQHK 235
Query: 203 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
+VIV+GNYL L+ VW+++ +MFDEKWFI++D+D +MQRVL+RHI TGK PDVA WRI Y
Sbjct: 236 IVIVEGNYLLLEEDVWREIRNMFDEKWFIDIDIDVSMQRVLQRHIGTGKEPDVAAWRISY 295
Query: 263 NDRPNAELIMKSKKNADLVIKSID 286
NDRPNAELI++SK+ ADLVI+S+D
Sbjct: 296 NDRPNAELILESKRAADLVIRSVD 319
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 287 | ||||||
| TAIR|locus:2007544 | 301 | AT1G03030 [Arabidopsis thalian | 0.993 | 0.946 | 0.600 | 3.7e-87 | |
| UNIPROTKB|G4MQ63 | 236 | MGG_02303 "Phosphoribulokinase | 0.714 | 0.868 | 0.391 | 1.3e-31 | |
| ASPGD|ASPL0000074767 | 234 | AN4382 [Emericella nidulans (t | 0.686 | 0.841 | 0.363 | 5.4e-31 | |
| POMBASE|SPAC227.14 | 235 | SPAC227.14 "uridine kinase (pr | 0.679 | 0.829 | 0.350 | 3e-30 | |
| CGD|CAL0002107 | 226 | orf19.7061 [Candida albicans ( | 0.665 | 0.845 | 0.349 | 1.2e-28 | |
| ASPGD|ASPL0000094429 | 583 | AN11942 [Emericella nidulans ( | 0.508 | 0.250 | 0.341 | 1.4e-20 | |
| SGD|S000001903 | 353 | YFH7 "Putative kinase with sim | 0.313 | 0.254 | 0.288 | 8.7e-16 | |
| UNIPROTKB|P11664 | 237 | yggC "conserved protein with n | 0.533 | 0.645 | 0.329 | 2e-15 | |
| SGD|S000005295 | 501 | URK1 "Uridine/cytidine kinase" | 0.334 | 0.191 | 0.314 | 9.7e-07 | |
| CGD|CAL0002407 | 545 | URK1 [Candida albicans (taxid: | 0.278 | 0.146 | 0.344 | 0.00012 |
| TAIR|locus:2007544 AT1G03030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 182/303 (60%), Positives = 214/303 (70%)
Query: 1 MDVSSLSTTPRACLSSSSTESTPLKRG-ELPSGHHGF--LSFSWIRRNANAQPVFGKTRS 57
M+VSS ST PR C S S RG ++ L FS IR+ N P + + S
Sbjct: 1 MEVSSFSTVPRYCNSRSFVPELSRFRGFKVHLWDQSLVPLHFS-IRKRKNT-PRYLISCS 58
Query: 58 LVQNKTSLKVLCSQR-------REIPVVEA------RHIVGLAGPPGAGKSTLAAEVVRR 104
++ T + C R +P A + +VGLAGPPGAGKST+A EVVRR
Sbjct: 59 QKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGKSTVANEVVRR 118
Query: 105 INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXX 164
+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARRGAPWTF
Sbjct: 119 VNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARRGAPWTFDPAL 178
Query: 165 XXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224
+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+ G WKD+S M
Sbjct: 179 LLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLEEGSWKDISDM 238
Query: 225 FDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKS 284
FDEKWFI+V+LDTAMQRV RHISTGKPPDVAKWR++YNDRPNAELI+KSK NADL+I+S
Sbjct: 239 FDEKWFIDVNLDTAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKSKTNADLLIRS 298
Query: 285 IDI 287
++I
Sbjct: 299 MNI 301
|
|
| UNIPROTKB|G4MQ63 MGG_02303 "Phosphoribulokinase/uridine kinase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 87/222 (39%), Positives = 117/222 (52%)
Query: 60 QNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119
Q T L R ++ R ++G+AG PGAGK+TLA VV + I + + D +
Sbjct: 4 QEVTGLAKKVWARYKLAEPTKRILIGIAGIPGAGKTTLARRVVDELKAIQLAEDGTADGE 63
Query: 120 VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXX------ 173
T +PMDG+HL +QL AM DP+ A RRGA +TF
Sbjct: 64 F-----VTDIPMDGYHLTRAQLAAMPDPEMAIHRRGAAFTFDGEGFLALLQKLSLPVEED 118
Query: 174 --XQGSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
QG+V YAPSFDH V DPV D I + + ++VI++GNYL LD WK +S+ DE W
Sbjct: 119 SGAQGTVTIYAPSFDHAVKDPVADSIPISPKMRIVIIEGNYLALDREPWKSAASLLDEIW 178
Query: 230 FIEVDLDTAMQRVLKRHISTGKPPD--VAKWRIEYNDRPNAE 269
F VD + A +R+ KRH+ G PD A+ RI D NA+
Sbjct: 179 FANVDREVARERLAKRHVEAGIVPDEEAARERIRTTDFLNAD 220
|
|
| ASPGD|ASPL0000074767 AN4382 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 77/212 (36%), Positives = 118/212 (55%)
Query: 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLS 139
AR ++ ++G PG+GK+ LA + RRIN +K + + + +A +PMDG+HL +
Sbjct: 23 ARLLIAVSGIPGSGKTELAITMARRIN----EKHGAQNGDL----IAAAIPMDGYHLTRA 74
Query: 140 QLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQ-----GSVYAPSFDHGVGDPVEDD 194
QL M DP+ A ARRGA +TF +++APSFDH V DPV++D
Sbjct: 75 QLAQMPDPEYAAARRGAAFTFDGEKFLALVRALREPLTPKTQTLHAPSFDHAVKDPVDND 134
Query: 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPD 254
I + +V+ +GNYL L+ W + + DE WF++VD DTA QR++KRH+ G D
Sbjct: 135 IPIAAARRVIFFEGNYLSLNKEPWSSAAKLMDELWFVDVDFDTARQRLVKRHVKAGIAKD 194
Query: 255 VA--KWRIEYNDRPNAELIMKSKKNADLVIKS 284
A + R + ND N I+ + + +I+S
Sbjct: 195 EADAEKRADENDLVNGREIVDCRLDVQEIIRS 226
|
|
| POMBASE|SPAC227.14 SPAC227.14 "uridine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 74/211 (35%), Positives = 114/211 (54%)
Query: 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 138
+ R ++GLAG PG+GKSTL A + K W ++ S ++ ++PMDGFH L
Sbjct: 27 QQRVLIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSL 74
Query: 139 SQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--XQGSVYAPSFDHGVGDPVEDDIL 196
+LD ++P++A A RGA WTF +YAPSFDH +GDPV DDI
Sbjct: 75 EELDRFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDIC 134
Query: 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG--KPPD 254
V +++++I +GNYL L+ W D ++D K ++ V+ A RV RH+ +G +
Sbjct: 135 VEPKNRILIFEGNYLLLNKPPWSDACKLYDIKAYLPVEHSVARARVAHRHLVSGLCATEE 194
Query: 255 VAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285
A R + ND N + K+ D+V++ +
Sbjct: 195 EAIERTDRNDMINLTFVEKNMVTPDIVLQQL 225
|
|
| CGD|CAL0002107 orf19.7061 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 73/209 (34%), Positives = 114/209 (54%)
Query: 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 138
+ R+++ LAG PG+GK+T A + +R+ S+F V VL DGFHLY
Sbjct: 32 QPRYLISLAGVPGSGKTTFANAIAKRL--------STFAKVV-------VLSQDGFHLYR 76
Query: 139 SQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG-SVYAPSFDHGVGDPVEDDILV 197
S+L M DPKEA RRGAP+TF + ++ APSFDH + DP+EDDI++
Sbjct: 77 SELTLMADPKEAFRRRGAPFTFNAQAFVNLISKLKDRSQTIKAPSFDHKLKDPIEDDIVI 136
Query: 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDV-- 255
++I++GNY+ L W ++ + D+ WFI+ + +R++KRH++ G +
Sbjct: 137 HGNVDIIIIEGNYVSLRDKYWDEIENFVDDTWFIKTPENLVRERIIKRHLNAGIAANEKE 196
Query: 256 AKWRIEYNDRPNAELIMKSKKNADLVIKS 284
A R + +D NA I + K ++I S
Sbjct: 197 AAERADGSDMQNAHYIDGNSKPTKVLILS 225
|
|
| ASPGD|ASPL0000094429 AN11942 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 56/164 (34%), Positives = 86/164 (52%)
Query: 126 ATVLPMDGFHLYLSQLDAMEDPK--EAHARRGAPWTFX--------------XXXXXXXX 169
A VL MDGFHL S+LD + + + EA+ RRGAPWTF
Sbjct: 74 ALVLSMDGFHLPRSELDTLPNKERTEAYVRRGAPWTFDIPAFLEFMRTLRLWADSGSPSS 133
Query: 170 XXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229
G +YAP+F H DP+ + I++ +VI++GNYL LD W+D++ + D +
Sbjct: 134 SSEETAGVLYAPTFSHSTKDPIPNSIVIDHTTSIVIIEGNYLLLDKPQWRDIAPLVDYRV 193
Query: 230 FIEVDLDTAMQRVLKRHISTGKPPDVAKW--RIEYNDRPNAELI 271
F++VDL A +R+ +RH+ G + + R++ ND N L+
Sbjct: 194 FVDVDLAEARERLAQRHVEAGIEQTLEEGFLRVDRNDAINGALV 237
|
|
| SGD|S000001903 YFH7 "Putative kinase with similarity to the PRK/URK/PANK kinase subfamily" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 8.7e-16, Sum P(3) = 8.7e-16
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFDEK----WFIE 232
++ P F+H + DP D + ++VI++G YL D WK + ++ D + I+
Sbjct: 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKID 296
Query: 233 VDLDTAMQRVLKRHISTGKPPDVAKWRIEY--NDRPN 267
+D + +RV KRH+ +G +A+ R ++ ND N
Sbjct: 297 IDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLN 333
|
|
| UNIPROTKB|P11664 yggC "conserved protein with nucleoside triphosphate hydrolase domain" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 53/161 (32%), Positives = 78/161 (48%)
Query: 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPS 182
P + T LPMDGFH Y S LDA + +GAP TF +G P
Sbjct: 74 PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFDVAKLTENLRQVV-EGDCTWPQ 127
Query: 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 242
+D DPVED + V +VIV+GN+L LD W +++S D FI +R+
Sbjct: 128 YDRQKHDPVEDALHVTAP--LVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERL 185
Query: 243 LKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 283
+ R I+ G VA+ D PN E ++ + + A+L+++
Sbjct: 186 ISRKIAGGLTRQVAEAFYARTDGPNVERVLMNSRQANLIVE 226
|
|
| SGD|S000005295 URK1 "Uridine/cytidine kinase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 102 (41.0 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 34/108 (31%), Positives = 56/108 (51%)
Query: 182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 241
SF H P ++ ++ G VV+++G Y D + + + D K +++ DLD + R
Sbjct: 142 SFVHHNRVPDKNIVIYGAS--VVVIEGIYALYD----RRLLDLMDLKIYVDADLDVCLAR 195
Query: 242 VLKRHI-STGKPPD--VAKWRIEYNDRPNAELIMK-SKKNADLVIKSI 285
L R I S G+ D + +W E +PNA +K + KNAD +I S+
Sbjct: 196 RLSRDIVSRGRDLDGCIQQW--EKFVKPNAVKFVKPTMKNADAIIPSM 241
|
|
| CGD|CAL0002407 URK1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 86 (35.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 203 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-TGKPPDVAKWRIE 261
V+IV+G Y D + + M D K +++ DLD + R L R I G+ A + E
Sbjct: 198 VIIVEGLYALHD----QQLLDMMDLKIYVDTDLDICLARRLTRDILYRGRDLGGAMQQWE 253
Query: 262 YNDRPNA-ELIMKSKKNADLVI-KSID 286
+PNA + I + +NADLVI + +D
Sbjct: 254 KFVKPNAVKFINPTVQNADLVIPRGLD 280
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 287 | |||
| PRK09270 | 229 | PRK09270, PRK09270, nucleoside triphosphate hydrol | 3e-55 | |
| COG1072 | 283 | COG1072, CoaA, Panthothenate kinase [Coenzyme meta | 7e-41 | |
| COG0572 | 218 | COG0572, Udk, Uridine kinase [Nucleotide transport | 8e-18 | |
| cd02023 | 198 | cd02023, UMPK, Uridine monophosphate kinase (UMPK, | 7e-15 | |
| TIGR00235 | 207 | TIGR00235, udk, uridine kinase | 8e-13 | |
| pfam00485 | 197 | pfam00485, PRK, Phosphoribulokinase / Uridine kina | 9e-10 | |
| PRK05480 | 209 | PRK05480, PRK05480, uridine/cytidine kinase; Provi | 2e-08 | |
| cd02024 | 187 | cd02024, NRK1, Nicotinamide riboside kinase (NRK) | 4e-07 | |
| PRK06696 | 223 | PRK06696, PRK06696, uridine kinase; Validated | 5e-07 | |
| cd02028 | 179 | cd02028, UMPK_like, Uridine monophosphate kinase_l | 1e-05 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 2e-05 | |
| COG4240 | 300 | COG4240, COG4240, Predicted kinase [General functi | 3e-05 | |
| cd02025 | 220 | cd02025, PanK, Pantothenate kinase (PanK) catalyze | 7e-05 | |
| PLN02348 | 395 | PLN02348, PLN02348, phosphoribulokinase | 1e-04 | |
| cd02026 | 273 | cd02026, PRK, Phosphoribulokinase (PRK) is an enzy | 7e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| COG1703 | 323 | COG1703, ArgK, Putative periplasmic protein kinase | 0.004 |
| >gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 3e-55
Identities = 76/205 (37%), Positives = 112/205 (54%), Gaps = 18/205 (8%)
Query: 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 138
+ R IVG+AGPPGAGKSTLA + + + A +PMDGFHL
Sbjct: 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ-------------DGELPAIQVPMDGFHLDN 77
Query: 139 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILV 197
+ LDA R+GAP TF+ L L+ LR VY P FD + DPV D I+V
Sbjct: 78 AVLDAHG----LRPRKGAPETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVV 133
Query: 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAK 257
++VIV+GNYL LD W+ ++ +FD F++ + +R++ R ++ G P+ A+
Sbjct: 134 PPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLAGGLSPEAAE 193
Query: 258 WRIEYNDRPNAELIMKSKKNADLVI 282
+ ND PNA L++++ + ADLV+
Sbjct: 194 AFVLRNDGPNARLVLETSRPADLVL 218
|
Length = 229 |
| >gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 7e-41
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 17/213 (7%)
Query: 71 QRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130
+ + I+G+AG GKST A +++ + WP+ P V V
Sbjct: 72 RFLGTNNQQRPFIIGIAGSVAVGKSTTA-RILQALLSRWPES----------PKVDLV-T 119
Query: 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGD 189
MDGFH + LD AR+G P +++ LL L +++ V+AP + H + D
Sbjct: 120 MDGFHYPNAVLDERG----LMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYD 175
Query: 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST 249
PV D V Q ++IV+GN + DG W +S FD +++ D + +R ++R +
Sbjct: 176 PVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKF 235
Query: 250 GKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 282
G +N P +E A
Sbjct: 236 GLTAFEDPASYFHNYAPLSEREAIESARAIWDN 268
|
Length = 283 |
| >gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 8e-18
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 30/204 (14%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
I+G+AG G+GK+T+A E+ ++ V+ +D ++ S L
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGVEKV----------------VVISLDDYYKDQSHLP 53
Query: 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202
E P F+ LL+ LK+L+ V P +D+ + I V
Sbjct: 54 FEE---RNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPND- 109
Query: 203 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPD--VAKWR 259
VVIV+G L D + + + D K F++ D D + R +KR + G+ + + ++
Sbjct: 110 VVIVEGILLLYD----ERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYV 165
Query: 260 IEYNDRPNAEL-IMKSKKNADLVI 282
RP E I +KK AD++I
Sbjct: 166 KTV--RPMYEQFIEPTKKYADIII 187
|
Length = 218 |
| >gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 7e-15
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 42/210 (20%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
I+G+AG G+GK+T+A E++ ++ ++ D ++ LS
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGNPK----------------VVIISQDSYYKDLS--- 41
Query: 143 AMEDPKEA------HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 196
E+ +E H + F+ LL++ L++L+N SV P +D +++ +
Sbjct: 42 -HEELEERKNNNYDHP---DAFDFD--LLISHLQDLKNGKSVEIPVYDFKTHSRLKETVT 95
Query: 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVA 256
V V+I++G D K++ + D K F++ D D + R ++R I +
Sbjct: 96 VY-PADVIILEGILALYD----KELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLES 150
Query: 257 KWRIE-YND--RPNAE-LIMKSKKNADLVI 282
I Y +P E I +K+ AD++I
Sbjct: 151 V--INQYLKFVKPMHEQFIEPTKRYADVII 178
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198 |
| >gnl|CDD|232890 TIGR00235, udk, uridine kinase | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 8e-13
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
I+G+ G G+GK+T+A ++ ++ K+ ++ D ++ S L
Sbjct: 8 IIGIGGGSGSGKTTVARKIYEQLGKLE----------------IVIISQDNYYKDQSHL- 50
Query: 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202
M + K+ + P F+ LL LKNL+N + P +D+ ++ + +
Sbjct: 51 EMAERKKTNFDH--PDAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIE-PKD 107
Query: 203 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD--VAKWR 259
VVI++G D + + + D K F++ LD + R ++R I+ G+ D + ++R
Sbjct: 108 VVILEGIMPLFD----ERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYR 163
Query: 260 IEYNDRPNAE-LIMKSKKNADLVI 282
RP E + +K+ ADL+I
Sbjct: 164 KTV--RPMYEQFVEPTKQYADLII 185
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207 |
| >gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 9e-10
Identities = 47/212 (22%), Positives = 78/212 (36%), Gaps = 30/212 (14%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
I+G+ G GAGK+T V R I F + P D FH Y
Sbjct: 1 IIGVTGSSGAGKTT----VARTFVSI-------FGREGVPAAGIE---GDSFHRYDRFYM 46
Query: 143 --AMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDI 195
ED K A +P + LL K L+ GS P + G DP ++
Sbjct: 47 DLHPEDRKRAGNNHYSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPEL 106
Query: 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD 254
+ G ++ +G L G + V+ + D K ++ D++ + ++R ++ G +
Sbjct: 107 IEG--ADILFYEG----LHGLYDERVAQLLDLKIGVDPDINLEWIQKIQRDMAERGHSLE 160
Query: 255 VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285
I +P+ I DL + +
Sbjct: 161 AVTDSILRR-KPDYVNYICPQFSYTDLNFQRV 191
|
In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197 |
| >gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-08
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 36/208 (17%)
Query: 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 141
I+G+AG G+GK+T+A+ + + +A V+P D ++ S L
Sbjct: 7 IIIGIAGGSGSGKTTVASTIYEEL---------------GDESIA-VIPQDSYYKDQSHL 50
Query: 142 DAMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 198
E+ + H P F+ LL+ LK L+ ++ P +D+ ++ I V
Sbjct: 51 S-FEERVKTNYDH-----PDAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIRVE 104
Query: 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPD--V 255
V+I++G L D + + + D K F++ LD + R LKR ++ G+ + +
Sbjct: 105 -PKDVIILEGILLLED----ERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVI 159
Query: 256 AKWRIEYNDRP-NAELIMKSKKNADLVI 282
++ RP + + I SK+ AD++I
Sbjct: 160 NQYLSTV--RPMHLQFIEPSKRYADIII 185
|
Length = 209 |
| >gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 39/180 (21%), Positives = 68/180 (37%), Gaps = 54/180 (30%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF----------DSQV-------KPPDV 125
IVG++G +GK+TLA + + +I P + + ++ K DV
Sbjct: 1 IVGISGVTNSGKTTLA----KLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDV 53
Query: 126 ATVLPMDGFHLYLSQLDA-MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFD 184
L M+ +S LD E K LR+ G+ P +
Sbjct: 54 LEALDMEAM---MSTLDYWRETGHFP-------------------KFLRSHGNENDPEKE 91
Query: 185 HGVGDPV---EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 241
+ + D+L ++IVDG L+ K + +FD ++F+ V +T +R
Sbjct: 92 FIEDAQIEETKADLLGAEDLHILIVDGFLLYNY----KPLVDLFDIRYFLRVPYETCKRR 147
|
This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. Length = 187 |
| >gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 48/220 (21%)
Query: 84 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 143
V + G +GK+T A E+ I K + +P A++ D FH
Sbjct: 25 VAIDGITASGKTTFADELAEEIKK-----------RGRPVIRASI---DDFH-------- 62
Query: 144 MEDPKEAHARRG---APWTFN-----PLLLLNCLKNLRNQGS--VYAPSFDHGVGDPVED 193
+P+ RRG A + L L L G S D PV +
Sbjct: 63 --NPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHN 120
Query: 194 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKP 252
L+ + V+IVDG +L ++ ++D K F++ D + + +R KR G
Sbjct: 121 PPLLAAPNAVLIVDGTFLLRP-----ELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSY 175
Query: 253 PDVAKWRIEYNDR--PNAELIMKS---KKNADLVIKSIDI 287
+ K Y R P +L + K+ AD+VI + D
Sbjct: 176 EEAEK---MYLARYHPAQKLYIAEANPKERADVVIDNSDP 212
|
Length = 223 |
| >gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 24/130 (18%)
Query: 83 IVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 140
+VG+AGP G+GK+T A + R+N I P S D P DG + + S
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP-VVISLDDYYVPRKTPRDE--DGNYDFESI 57
Query: 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 200
LD LL N L +L N V P +D G L
Sbjct: 58 LDL------------------DLLNKN-LHDLLNGKEVELPIYDFRTGKRRGYRKLKLPP 98
Query: 201 HKVVIVDGNY 210
VVI++G Y
Sbjct: 99 SGVVILEGIY 108
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 2e-05
Identities = 21/167 (12%), Positives = 46/167 (27%), Gaps = 53/167 (31%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
I+ + GPPG+GKSTLA ++ ++ V+ +D +
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLG-------------------IPVISLDDLLREEGLAE 41
Query: 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202
+ + + ++IL L +
Sbjct: 42 LDDGELDDIDID----------------------------------LELLEEILDELAKQ 67
Query: 203 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST 249
++DG ++ + + ++R L+R
Sbjct: 68 EWVIDGVRESTLELRLEEADLVVFLDLPLPACRFRLLKRRLQRGRGE 114
|
Length = 114 |
| >gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
IVG++GP G+GKSTL+A +VR + ++ ++ +D YL+ D
Sbjct: 52 IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-------------LDDL--YLTHAD 96
Query: 143 AMEDPKEAHAR---RGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDH----GVGDPVEDD 194
+ ++ + RG P T +P L LN L + G V P FD G GD
Sbjct: 97 RLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQT 156
Query: 195 ILVGLQHKVVIVDG 208
+ + +VI++G
Sbjct: 157 QWIKFEVDIVILEG 170
|
Length = 300 |
| >gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-05
Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 67/238 (28%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----L 138
I+G+AG GKST A V++ + WP + ++ T DGF LY L
Sbjct: 1 IIGIAGSVAVGKSTT-ARVLQALLSRWPDHPNV--------ELITT---DGF-LYPNKEL 47
Query: 139 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILV 197
+ M+ R+G P +++ LL LK++++ V P + H D + +
Sbjct: 48 IERGLMD-------RKGFPESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQT 100
Query: 198 GLQHKVVIVDG-NYL------------FLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLK 244
Q ++I++G N L F D ++ D EKW+I+ R LK
Sbjct: 101 VDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIK--------RFLK 152
Query: 245 ------------RHISTGKPPDVAK------WRIEYNDRPN-AELIMKSKKNADLVIK 283
H + A W+ N N E I+ ++ ADL+++
Sbjct: 153 LRETAFSDPDSYFHRYAKMSEEEAIAFAREVWK-NIN-LKNLRENILPTRNRADLILE 208
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. Length = 220 |
| >gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 60/251 (23%), Positives = 101/251 (40%), Gaps = 35/251 (13%)
Query: 43 RRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVV 102
+ G RS +S+ V+ + VV +GLA G GKST +
Sbjct: 17 SITTPTKSNLGSRRSKSPAASSV-VVALAADDGTVV-----IGLAADSGCGKSTF----M 66
Query: 103 RRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157
RR+ ++ P K + DS D TV+ +D +H LD KE P
Sbjct: 67 RRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS----LD-RTGRKEKGVTALDP 121
Query: 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDH--GVGDPVEDDILVGLQH--KVVIVDGNYLFL 213
N L+ +K L+ +V P ++H G+ DP E L K+++++G +
Sbjct: 122 RANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE------LIEPPKILVIEGLHPMY 175
Query: 214 DGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIEYNDRPNAELIM 272
D + V + D ++++ D ++R ++ G + K IE I
Sbjct: 176 D----ERVRDLLDFSIYLDISDDVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYID 231
Query: 273 KSKKNADLVIK 283
K+ AD+VI+
Sbjct: 232 PQKQYADVVIE 242
|
Length = 395 |
| >gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 72/224 (32%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----- 137
I+G+AG G GKST +RR+ ++ D+ TV+ +D +H
Sbjct: 1 IIGVAGDSGCGKSTF----LRRLTSLF------------GSDLVTVICLDDYHSLDRKGR 44
Query: 138 -LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDD 194
+ + A+ DP+ + F+ L+ LK L+ ++ P ++H G DP E
Sbjct: 45 KETGITAL-DPRANN--------FD--LMYEQLKALKEGQAIEKPIYNHVTGLIDPPE-- 91
Query: 195 ILVGLQHKVVIVDGNYLFLDGGVWK--DVSSMFD------EKWFIEVD-------LDTAM 239
L+ +V+++G + D V + D S D W I+ D L+ +
Sbjct: 92 -LIKPTK-IVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVL 149
Query: 240 QRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 283
+ R PD + I K+ AD+VI+
Sbjct: 150 ASIEARK------PDFEAY------------IDPQKQYADVVIQ 175
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. Length = 273 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.002
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 81 RHIVGLAGPPGAGKSTLAAEVVRRINK 107
++ + GPPG+GK+TLA + R +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGP 28
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 82 HIVGLAGPPGAGKSTLAAEVVRR 104
H++G+ G PGAGKSTL + R
Sbjct: 52 HVIGITGVPGAGKSTLIEALGRE 74
|
Length = 323 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.98 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.98 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.98 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.98 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.98 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.98 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.98 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.98 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.98 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.98 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.98 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.98 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.98 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.98 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.98 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.98 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.98 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.97 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.97 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.97 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.97 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.97 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.97 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.97 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.97 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.97 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.97 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.97 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.97 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.97 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.97 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.97 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.97 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.97 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.97 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.97 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.97 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.97 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.97 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.97 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.97 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.97 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.97 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.97 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.97 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.97 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.97 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.97 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.97 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.97 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.97 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.97 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.97 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.97 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.97 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.97 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.97 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.97 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.97 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.97 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.97 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.97 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.97 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.97 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.97 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.97 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.97 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.97 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.96 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.96 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.96 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.96 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.96 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.96 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.96 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.96 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.96 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.96 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.96 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.96 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.96 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.96 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.96 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.96 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.96 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.96 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.96 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.96 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.96 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.96 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.96 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.96 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.96 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.96 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.96 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.96 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.96 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.96 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.96 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.96 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.96 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.96 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.96 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.96 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.96 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.96 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.96 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.95 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.95 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.95 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.95 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.95 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.95 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.95 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.95 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.95 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.95 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.95 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.95 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.95 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.95 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.95 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.95 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.95 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.95 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.95 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.95 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.95 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.95 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.95 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.95 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.95 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.95 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.95 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.95 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.95 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.95 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.95 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.95 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.95 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.95 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.95 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.95 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.95 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.95 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.95 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.95 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.95 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.95 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.95 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.94 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.94 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.94 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.94 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.94 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.94 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.94 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.94 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.94 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.94 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.94 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.94 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.94 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.94 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.94 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.94 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.94 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.94 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.94 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.94 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.94 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.94 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.93 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.93 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.93 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.93 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.93 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.93 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.93 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.93 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.93 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.93 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.93 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.93 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.93 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.93 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.93 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.93 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.93 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.92 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.92 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.92 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.92 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.92 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.92 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.91 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.91 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.91 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.91 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.91 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.9 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.9 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.9 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.89 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.89 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.89 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.89 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.89 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.88 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.88 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.87 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.87 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.86 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.86 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.86 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 99.85 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.84 | |
| COG0572 | 218 | Udk Uridine kinase [Nucleotide transport and metab | 99.84 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.83 | |
| PTZ00301 | 210 | uridine kinase; Provisional | 99.83 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.83 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.82 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 99.82 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.79 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.79 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.79 | |
| PF00485 | 194 | PRK: Phosphoribulokinase / Uridine kinase family; | 99.78 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 99.78 | |
| KOG2702 | 323 | consensus Predicted panthothenate kinase/uridine k | 99.77 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 99.77 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.77 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.76 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 99.76 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.75 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 99.75 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.74 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 99.74 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.74 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 99.74 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.73 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.72 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.71 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.71 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.71 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.7 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.69 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.66 | |
| PLN02348 | 395 | phosphoribulokinase | 99.65 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.65 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.65 | |
| cd02029 | 277 | PRK_like Phosphoribulokinase-like (PRK-like) is a | 99.64 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.64 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.63 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.62 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 99.62 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.6 | |
| cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_ | 99.59 | |
| COG1072 | 283 | CoaA Panthothenate kinase [Coenzyme metabolism] | 99.59 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.58 | |
| PRK07429 | 327 | phosphoribulokinase; Provisional | 99.56 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.56 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.55 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.54 | |
| PRK15453 | 290 | phosphoribulokinase; Provisional | 99.53 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.47 | |
| cd02024 | 187 | NRK1 Nicotinamide riboside kinase (NRK) is an enzy | 99.44 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.42 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.37 | |
| PRK06696 | 223 | uridine kinase; Validated | 99.36 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.36 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.34 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.31 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.31 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.31 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.3 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.29 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.26 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.2 | |
| PRK07667 | 193 | uridine kinase; Provisional | 99.19 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.15 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.12 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 99.11 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.08 | |
| PLN03046 | 460 | D-glycerate 3-kinase; Provisional | 99.01 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.01 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 98.95 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 98.95 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.94 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 98.89 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.87 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 98.87 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.86 | |
| COG4240 | 300 | Predicted kinase [General function prediction only | 98.85 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 98.85 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 98.85 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.81 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.8 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.79 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 98.78 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.72 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.71 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.61 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.57 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.56 | |
| KOG2878 | 282 | consensus Predicted kinase [General function predi | 98.52 | |
| KOG4203 | 473 | consensus Armadillo/beta-Catenin/plakoglobin [Sign | 98.51 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.49 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.47 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.46 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.43 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.4 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.37 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 98.36 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.36 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.35 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.27 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.25 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.23 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 98.23 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 98.22 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.2 | |
| KOG3308 | 225 | consensus Uncharacterized protein of the uridine k | 98.19 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.18 | |
| PRK05057 | 172 | aroK shikimate kinase I; Reviewed | 98.18 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.16 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.16 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.1 | |
| PRK14732 | 196 | coaE dephospho-CoA kinase; Provisional | 98.09 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.09 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.09 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.09 | |
| PRK14730 | 195 | coaE dephospho-CoA kinase; Provisional | 98.08 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.06 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 98.05 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.04 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 98.04 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.02 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.02 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.01 | |
| PRK14731 | 208 | coaE dephospho-CoA kinase; Provisional | 98.0 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.98 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.97 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 97.95 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.95 | |
| cd02022 | 179 | DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2 | 97.94 | |
| PRK00081 | 194 | coaE dephospho-CoA kinase; Reviewed | 97.91 | |
| PRK13477 | 512 | bifunctional pantoate ligase/cytidylate kinase; Pr | 97.91 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=291.44 Aligned_cols=198 Identities=19% Similarity=0.208 Sum_probs=171.6
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.+.||+..++ +++ ++|++||+++|+||||||||||+|+|+++.+ |++|+|.++|...
T Consensus 1 ~mi~i~~l~K~fg~~~VL-----kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVL-----KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDI 72 (240)
T ss_pred CeEEEEeeeEEeCCeEEe-----cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhH
Confidence 468899999999999999 999 9999999999999999999999999999999 9999999998532
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
++.+|++||+ |.+++ ++|+.+|+.+... ..+.++++..+++.++|+.++ +..+.++.+|||||||||+||+|
T Consensus 73 ~~~R~~vGmVFQ~-fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 73 LKLRRKVGMVFQQ-FNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred HHHHHhcCeeccc-ccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 3458999999 44443 5999999998654 456677778888999999999 56788999999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcCc---eEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~---i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|+.+|+++++|+++..||+ ++++.+.++.+.+ ++|||++.++.+ |++ |++++.|+|+++..
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 9999999999999999999 4555556666554 699999999988 776 88999998888643
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=286.81 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=171.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++++++.|+.+.++ +++ ++|++||+++++|||||||||++|||+++++ |++|+|+++|.+..
T Consensus 1 MI~~~nvsk~y~~~~av-----~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 1 MIEFENVSKRYGNKKAV-----DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVE 72 (309)
T ss_pred CceeeeeehhcCCceee-----eeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHH
Confidence 57899999999999999 999 9999999999999999999999999999999 99999999997653
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc----CCCCCCCCCCcccCCchhhhhhh
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.+||+-|....+++ +|+.+|+.......+.+++...+++.++++.++. ..++++.+|||||+|||.+++|+
T Consensus 73 LRr~IGYviQqigLFPh--~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 73 LRRKIGYVIQQIGLFPH--LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred HHHhhhhhhhhcccCCC--ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 459999998665554 9999999999888887777778889999999883 56789999999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHH---hhc-CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSS---MFD-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~---~~~-~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|.++++|+|+-.+|+ .+++++.+ .+. +.||||||++++.. |++ |+++..++|+++..
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 999999999999999999 33333333 333 34799999999988 665 89999999998764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=305.90 Aligned_cols=200 Identities=16% Similarity=0.163 Sum_probs=170.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+.++++++++.||+..++ +++ +.|++||+++|+||||||||||+++|+|+.. |++|+|.++|.+.
T Consensus 2 ~~~~l~i~~v~k~yg~~~av-----~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 2 PKPALEIRNVSKSFGDFTAV-----DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVP 73 (352)
T ss_pred CCceEEEEeeeeecCCeeEE-----ecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCC
Confidence 35688999999999999999 999 9999999999999999999999999999999 9999999998653
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
++.+++|||+ |.+++ +|||.+|++|++...+. ++++..+++.++++.++ ...++++.+|||||||||++|+||
T Consensus 74 p~kR~ig~VFQ~-YALFP-HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 74 PEKRPIGMVFQS-YALFP-HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred hhhcccceeecC-cccCC-CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHh
Confidence 4569999999 44443 69999999999984443 33445678999999887 567889999999999999999999
Q ss_pred ccCccEEEEcCcccCCChhh----HHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDGGV----WKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe~~----~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|++|++|+|+.-||..+ ..+++++... .||||||.++++. |++ |++...|+|+|++.
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999999999999999843 3444444332 3799999999998 666 88999999999864
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=285.39 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=159.4
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC---CCce
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDV 125 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~---~~~~ 125 (287)
..+.++++++.|+...++ +++ ++|.+||+++|+||||||||||+|+|+|+.+ |++|+|.++|.. ....
T Consensus 2 ~~l~i~~v~~~f~~~~vl-----~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~ 73 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVL-----EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPD 73 (248)
T ss_pred ceEEEEeeEEEeCceEEe-----ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCC
Confidence 457788999999998888 999 9999999999999999999999999999999 999999998864 3456
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
++|+||+...++ ++|+.+|+.++....+.++++..+++.++|+.++ ...++++.+|||||||||+||+|++..|++
T Consensus 74 ~~~vFQ~~~LlP--W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l 151 (248)
T COG1116 74 IGYVFQEDALLP--WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL 151 (248)
T ss_pred EEEEeccCcccc--hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence 999999976544 5999999999988877666667778999999998 577889999999999999999999999999
Q ss_pred EEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH
Q 023126 204 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 204 li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
|++|||+.-||+ .+++.+.+++.. ++|||||.+++..
T Consensus 152 LLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 152 LLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred EEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 999999999999 555666666543 5799999999877
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=287.31 Aligned_cols=197 Identities=16% Similarity=0.168 Sum_probs=167.1
Q ss_pred ccccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
+++++++++.|... .++ +++ +.|++|+|+||+|.||||||||+|+|+++.+ |++|+|+++|.+.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al-----~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~ 72 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTAL-----DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTA 72 (339)
T ss_pred CeEEEeeeeeeccCCCCceeee-----ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEeccc
Confidence 46788899988873 344 777 9999999999999999999999999999999 9999999999542
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCch
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv 191 (287)
++.||++||. |.+.. .+||++|+++++...+.++++..+++.++|+.++ +..+.++.+|||||||||
T Consensus 73 l~~~~Lr~~R~~IGMIFQh-FnLLs-srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 73 LSEAELRQLRQKIGMIFQH-FNLLS-SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred CChHHHHHHHhhccEEecc-ccccc-cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHH
Confidence 3569999999 44443 3799999999999999888888999999999998 567789999999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChh----hHHHHH---HhhcCc-eEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVS---SMFDEK-WFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~----~~~~l~---~~~~~~-i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+||+||+.+|++|+.||.+..||++ +++.|. +.+..+ ++|||.|+++.. |+. |++++.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999993 333333 333333 599999999988 665 9999999888865
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 231 ~ 231 (339)
T COG1135 231 A 231 (339)
T ss_pred c
Confidence 3
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=277.29 Aligned_cols=201 Identities=18% Similarity=0.225 Sum_probs=172.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+.++++++++++++||++.++ +++ +.|++||+++|+||||||||||+|.|.|+++ |++|+|++.|.+.
T Consensus 4 ~~~~~I~vr~v~~~fG~~~Il-----d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~l 75 (263)
T COG1127 4 SPEPLIEVRGVTKSFGDRVIL-----DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQL 75 (263)
T ss_pred CCcceEEEeeeeeecCCEEEe-----cCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhcc
Confidence 457899999999999999999 999 9999999999999999999999999999999 9999999998764
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qr 190 (287)
.+++|++||.+-.+.. +||+||+.+..+.+ .++++...+.+...|+.+|.. .++++.+|||||++|
T Consensus 76 s~~~~~~ir~r~GvlFQ~gALFss--ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KR 153 (263)
T COG1127 76 SEEELYEIRKRMGVLFQQGALFSS--LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKR 153 (263)
T ss_pred CHHHHHHHHhheeEEeeccccccc--cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHH
Confidence 2459999999765554 99999999977655 456666667778888888843 568899999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh-------hhHHHHHHhhcC-ceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG-------GVWKDVSSMFDE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe-------~~~~~l~~~~~~-~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
+++|+|++.+|.+++.|||+..||+ +++..+++.+.. .++||||++.+.. |++ |++++.|+++++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999 444555555544 4699999999987 555 889999999998
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
.+
T Consensus 234 ~~ 235 (263)
T COG1127 234 LA 235 (263)
T ss_pred Hh
Confidence 65
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=294.66 Aligned_cols=198 Identities=17% Similarity=0.156 Sum_probs=170.9
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
..++++++++.||+..++ +++ +.++.||+++|+||||||||||||+|+|+.+ |++|+|.++|.+.
T Consensus 2 ~~i~l~~v~K~yg~~~~l-----~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 2 AELELKNVRKSFGSFEVL-----KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred cEEEEeeeEEEcCCceee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 357899999999987677 888 9999999999999999999999999999999 9999999998653
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.++++||+.. +++ +|||++|+.|+++..+.++++..+++.++.+.++ ...++++.+|||||||||++|+|++.+
T Consensus 74 ~R~iamVFQ~yA-LyP-hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 74 KRGIAMVFQNYA-LYP-HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK 151 (338)
T ss_pred HCCEEEEeCCcc-ccC-CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence 346999999944 433 5999999999999999888888889999988887 567889999999999999999999999
Q ss_pred ccEEEEcCcccCCChhh----HHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe~~----~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|+++++|||+.-||..+ ..++.++.+ +.||||||..+++. |++ |++...|+|.|++.
T Consensus 152 P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 152 PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999833 333333332 35899999999998 655 88889999999875
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=281.15 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=170.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++++++++++|+++.++ +++ +++++|++++|+||||||||||+|+|+|+++ |.+|+|.++|.+.
T Consensus 2 ~L~~~~ls~~y~~~~il-----~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYGGKPIL-----DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEECCeeEE-----ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHH
Confidence 57889999999999999 999 9999999999999999999999999999999 9999999999764
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhc----CCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhh
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
.+.++|+||.+...+ .+||+|.+.+++.-+ +.+...|.+.+.+.|+.++ ...++.+.+||||||||+.||+
T Consensus 74 lAk~ia~vpQ~~~~~~--~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 74 LAKKLAYVPQSPSAPF--GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred HhhhEEEeccCCCCCC--CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 346999999975433 489999999875432 2234556777888999888 5678899999999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|++.++++|++|||+..||. ++++.++++.++ +|++.||++.+.+ +++ |++++.|+|++++..
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 99999999999999999999 667777777633 4799999999988 555 899999999998643
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=279.74 Aligned_cols=201 Identities=16% Similarity=0.142 Sum_probs=166.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++|+++.|+.+.++ +++ +++++|++++|+||||||||||+|+|+|+++ |.+|+|.+.+...
T Consensus 2 ~~~i~v~nl~v~y~~~~vl-----~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~ 73 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVL-----EDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRK 73 (254)
T ss_pred CcEEEEeeeEEEECCEeee-----eccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEcccccccccc
Confidence 4689999999999976788 999 9999999999999999999999999999999 9999998877542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHH----hcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~----~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
..+|||+||....-+...+||+|.+..+.. +++.+.+.+.+.+.++|++++ ...++++.+|||||+|||.||+|
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 357999999642222223899999887632 223345567888999999998 67789999999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh---hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~---gr~v~~G~~~ev~~ 257 (287)
|+.+|++|++|||+..+|. .+.+.|.++.++ +++||||++.+.. +++ +++++.|+++++..
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~ 227 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLT 227 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccC
Confidence 9999999999999999999 344444444443 4599999999998 665 77889999999765
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=271.40 Aligned_cols=203 Identities=14% Similarity=0.106 Sum_probs=169.1
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++|+++.|+.+.... .+.+++ +.+.+||++||+|+||||||||+++|+|+.+ |++|+|.++|...
T Consensus 2 ~~l~v~nl~~~y~~~~~~~-~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAF-HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCcchh-hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 5788999999999888222 122888 9999999999999999999999999999999 9999999998531
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.+.++|||++.-.+|.+|+.+.+..+....+.++ ..+++.++|+.++ ...++++.+|||||+||++||+|
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 345999999999988899999999988877755543 3445889999998 45678999999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
++.+|++||+||++..||. ++|+.+.++.+. .+|||||+..+.. |++ |++++.++..++...
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999 344444444332 3699999999988 665 899999988887654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=276.17 Aligned_cols=197 Identities=19% Similarity=0.204 Sum_probs=165.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC---CC----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---KP---- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~---~~---- 122 (287)
.+.++++.+.|+...++ +++ +.|+.||.++|+||||||||||+++|+|++. |++|.|.++|. +.
T Consensus 2 ~i~i~~~~~~~~~~~a~-----~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 2 SIRINNVKKRFGAFGAL-----DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLA 73 (345)
T ss_pred ceeehhhhhhccccccc-----ccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccc
Confidence 46678899999999998 888 9999999999999999999999999999999 99999999987 32
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CC-CCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~-~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.||+++|+.. ++ ++|||.+|++|++.... .+ ......++.++|+.+. ...++++.+|||||+|||++|+|
T Consensus 74 ~~~R~VGfvFQ~YA-LF-~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 74 VRDRKVGFVFQHYA-LF-PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred hhhcceeEEEechh-hc-ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence 346999999944 33 36999999999886552 22 3455678888888766 56788999999999999999999
Q ss_pred hccCccEEEEcCcccCCChhhHHHHHHh----hcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSM----FDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~~~~~l~~~----~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++..|++|++|||+-.||..+.+.++.. .+. ++|||||.+++++ |++ |++...|+++|++.
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999555555443 332 4799999999998 666 89999999999854
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=263.51 Aligned_cols=204 Identities=15% Similarity=0.130 Sum_probs=171.9
Q ss_pred CccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+++++++++.| +++.++ +++ +.|.+||+++|+|+||||||||+|+|+|+.. |++|+|+++|...
T Consensus 2 ~~i~~~nl~k~yp~~~~aL-----~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQAL-----KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCCCceee-----eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccch
Confidence 578999999999 889999 999 9999999999999999999999999999999 9999999998543
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHH--------hcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcc
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA--------RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHG 186 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~--------~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG 186 (287)
+..+||+||+....+ .++|.+|+..+.. .++....++...+.+.|++++ +....+..+||||
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~--r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGG 151 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVP--RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGG 151 (258)
T ss_pred HHHHHHHHhceeEeccCCccc--ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence 235999999955444 3899999987543 345566677888899999999 4566788899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---C-ceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~-~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+|||+||+||+.+|++++.|||+.-||+ .+++.+++... . +|+..|+++.+.+ |++ ||++.+|+
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~ 231 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCC
Confidence 99999999999999999999999999999 45555555543 2 3577899999998 777 89999999
Q ss_pred hHHHHHHHHHhc
Q 023126 252 PPDVAKWRIEYN 263 (287)
Q Consensus 252 ~~ev~~~~~~~~ 263 (287)
+.++....+...
T Consensus 232 ~~el~~~~~~~i 243 (258)
T COG3638 232 ASELTDEALDEI 243 (258)
T ss_pred hhhhhHHHHHHH
Confidence 998777666544
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=252.47 Aligned_cols=189 Identities=18% Similarity=0.117 Sum_probs=160.4
Q ss_pred ccccCcccccccccc-hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKTSL-KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.|+... ++ +++ +.+++||++-|+||||||||||+|+|.+..+ |++|+|.+++.+.
T Consensus 1 mI~f~~V~k~Y~~g~~aL-----~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~ 72 (223)
T COG2884 1 MIRFENVSKAYPGGREAL-----RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGR 72 (223)
T ss_pred CeeehhhhhhcCCCchhh-----hCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccc
Confidence 577899999998664 77 888 9999999999999999999999999999999 9999999988653
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
++.||++|||.-.++. +|++||+++.+...|.+.+...+++.+.|+.++ ...+..+.+||||||||++||+
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIAR 150 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIAR 150 (223)
T ss_pred ccchhhheeeeEeeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHH
Confidence 3569999999555544 899999999999999888888889999999998 4456678899999999999999
Q ss_pred hhccCccEEEEcCcccCCChhhHHHHHHhhc-------CceEEEeCHHHHHH---HHh----hccccC
Q 023126 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~~~~~l~~~~~-------~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|++.+|.+|+.|||+--||+....++.+++. .+++.|||.+.+.. |++ ||++.+
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 9999999999999999999954444444443 24689999999887 554 666543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=274.05 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=172.4
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++.++++.|+ .+.++ +++ +.+++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~~i~~~~l~k~~~~~~~~l-----~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTAL-----DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred ceeeecceEEEeCCCCEEE-----eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 4577899999999 69999 999 9999999999999999999999999999999 9999999988543
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCC--CCCCCCCCcccCCchhhhhhhc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~~qrv~ia~al~ 198 (287)
++.++|++|++.+++ .+|++|++.+....++.+...+.+++.++++.++... ++++..||+|||||+.||.|++
T Consensus 75 ~~~~~igy~~~~~~~~~--~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 75 KVRRRIGYVPQEPSLYP--ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred HHHhheEEEccCCCCCc--cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 345999999977444 4999999999998887665556678899999999554 6789999999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
.+|+++++|||+..||+ .+++.|+++.+. ++++||.++++.. |++ |++++.|+++++...
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999 677777777763 3488999999988 454 899999988886544
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=270.47 Aligned_cols=180 Identities=19% Similarity=0.225 Sum_probs=157.6
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------------CceeEEEeCCCCCCCcc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------PDVATVLPMDGFHLYLS 139 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------------~~~i~~v~qd~~~~~~~ 139 (287)
+++ +.++.|||+.|.|-||||||||+++|+++++ |++|+|.++|.+. ++.++++||.-..++
T Consensus 45 ~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie---pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP-- 119 (386)
T COG4175 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE---PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP-- 119 (386)
T ss_pred ccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc--
Confidence 555 9999999999999999999999999999999 9999999998763 345999999844333
Q ss_pred cCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh--
Q 023126 140 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-- 215 (287)
Q Consensus 140 ~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe-- 215 (287)
++||.+|..|++...|.++++..+++.++|+.++ ...++++.+|||||||||.+|+|++.+|.+|++|+++..||+
T Consensus 120 hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI 199 (386)
T COG4175 120 HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI 199 (386)
T ss_pred chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH
Confidence 5899999999999999999888999999999998 567789999999999999999999999999999999999999
Q ss_pred --hhHHHHHHh----hcCceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 216 --GVWKDVSSM----FDEKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 216 --~~~~~l~~~----~~~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|.++ .++++|||||++++++ |+. |+++..|+|+|++.
T Consensus 200 R~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 200 RTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 444444444 3345799999999999 665 89999999999864
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=281.76 Aligned_cols=202 Identities=14% Similarity=0.159 Sum_probs=167.3
Q ss_pred cCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 46 ANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
|+.+++++++++++.|++..++ +++ +.+++||+++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~ 72 (351)
T PRK11432 1 MTQKNFVVLKNITKRFGSNTVI-----DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTH 72 (351)
T ss_pred CCCCcEEEEEeEEEEECCeEEE-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCC
Confidence 3456789999999999987777 888 9999999999999999999999999999999 9999999988542
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.++|++|+...++ ++|+.+|+.++...++.+..+..+++.++++.++ ...++++.+|||||+||+++|+|
T Consensus 73 ~~~~~r~ig~vfQ~~~lfp--~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 73 RSIQQRDICMVFQSYALFP--HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred CCHHHCCEEEEeCCcccCC--CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 356999999965444 4899999999876655444444567788888877 34578889999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|++|++|+++..||.. +++.++++.. ..|++|||++++.. |++ |++++.|++++++.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999993 3444444432 24799999999877 554 89999999998754
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=262.72 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=172.0
Q ss_pred CccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
++++++++++.|.++ .++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|.|.++|.+.
T Consensus 2 ~~i~~~~l~~~y~~~~~~l-----~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 2 RMIEAENLSFRYPGRKAAL-----KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred ceEEEEEEEEEcCCCceee-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhh
Confidence 467888999999877 555 788 9999999999999999999999999999999 9999998888642
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
++.+||++|++...+.. -||.+.++|+..+.+.+.++..+++.++++.++ ...++++.+|||||+|||+||.+
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred HHHhhcceEEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHH
Confidence 45699999998655442 589999999999999887777788999999888 45678888999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
++.+|++|++||++..||. .+++.+.++... .|++|||++.+.. |++ |+++.+|+|.++..+.
T Consensus 153 La~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 153 LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 9999999999999999999 455555555443 5799999999988 554 8999999998887654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=250.47 Aligned_cols=200 Identities=12% Similarity=0.083 Sum_probs=162.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~ 120 (287)
...++++++++.+.||+..++ .++ +.+.++++++|+||||||||||+|++..+.. .. .|+|.++|.
T Consensus 3 ~~~~~~~~~~l~~yYg~~~aL-----~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~v~~~g~ 74 (253)
T COG1117 3 MKIPAIEVRDLNLYYGDKHAL-----KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGEVLLDGK 74 (253)
T ss_pred cccceeEecceeEEECchhhh-----ccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEEEEECCe
Confidence 345789999999999999999 999 9999999999999999999999999999876 44 488888886
Q ss_pred CC----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH------HhccCCCCCCCCCC
Q 023126 121 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK------NLRNQGSVYAPSFD 184 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~------~l~~~~~~~~~~lS 184 (287)
+. ++.+|++||.+..++ +++++|+.++.+.+|.....-.+.+++.|. ++.+..+.....||
T Consensus 75 ni~~~~~d~~~lRr~vGMVFQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LS 151 (253)
T COG1117 75 NIYDPKVDVVELRRRVGMVFQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLS 151 (253)
T ss_pred eccCCCCCHHHHHHHheeeccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCC
Confidence 53 345999999976544 899999999999888765333444555544 34466677888999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
||||||++||++++.+|++|++|+|+..||+ .+-+.+.++.+. +|+|||+|..+.+ +.. |++++.|.
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~ 231 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcC
Confidence 9999999999999999999999999999999 233333444332 4699999999987 322 99999999
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 232 T~~iF~ 237 (253)
T COG1117 232 TDKIFT 237 (253)
T ss_pred HHhhhc
Confidence 988754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=252.06 Aligned_cols=200 Identities=18% Similarity=0.129 Sum_probs=165.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++++++++++|++.+ .+. +++ |.+++|+++||+|||||||||++++|++++. |++|.|.++|.+.
T Consensus 1 Ml~v~~l~K~y~~~v---~Av-rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 1 MLEVTDLTKSYGSKV---QAV-RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred CeeeeehhhhccCHH---hhh-hheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHH
Confidence 578899999999943 233 555 9999999999999999999999999999999 9999999998653
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
++.+|+++-. ..++. .||++||+.+..+.+++...+...+..++.+.++ ...++++..||.||||||+||+|++++
T Consensus 74 rr~IGVl~~e-~glY~-RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 74 RRKIGVLFGE-RGLYA-RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred hhhcceecCC-cChhh-hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 3458888833 33333 4999999999999999887777777878777777 567889999999999999999999999
Q ss_pred ccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 201 HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 201 a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
|+++++|+|+..||-. +.+.+.++.. .+||.||+|+++.. |++ |.++..|+++++....
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 9999999999999983 3333333333 35799999999987 665 8999999988876543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=257.06 Aligned_cols=183 Identities=15% Similarity=0.041 Sum_probs=146.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++.+.|+..... ..+.+++ +.|++||+++|+||||||||||+++|.|+.+ |++|.+.++|.+.
T Consensus 2 i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGEK-VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCcc-eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 5677888888754332 2222777 9999999999999999999999999999999 9999999988432
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCC-CCCCCCCcccCCchhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGS-VYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~-~~~~~lSgG~~qrv~ia~ 195 (287)
.+.+||+||+...++ .+|+.||+.++....+.+.....+++.++++.++. ... +++.+|||||||||+||+
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~--~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR 155 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLP--DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155 (226)
T ss_pred HHHHHHhEEEECccCCCCC--CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH
Confidence 345999999955444 39999999998776665543445667788888773 344 668899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|++.+|++++.|||+--||. .+++.+.++.+ ..|+||||.+.+..
T Consensus 156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 99999999999999999999 45555555543 34699999999876
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=278.83 Aligned_cols=197 Identities=16% Similarity=0.094 Sum_probs=162.9
Q ss_pred ccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.| +...++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~~~~~~l-----~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVI-----KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCCCCEEE-----eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 57889999999 777777 888 9999999999999999999999999999999 9999999988543
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.++|++|+...++ ++|+++|+.++....+.+.....+++.++++.++ ...++++.+|||||+|||+||+|++.+
T Consensus 75 ~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~ 152 (356)
T PRK11650 75 DRDIAMVFQNYALYP--HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVRE 152 (356)
T ss_pred HCCEEEEeCCccccC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965443 4899999999876554443334566788888877 456788899999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++|++||++..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 153 PAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 999999999999998 34445554433 24799999999877 444 89999999998754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=271.58 Aligned_cols=201 Identities=17% Similarity=0.129 Sum_probs=167.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..++++++++++.|++..++ +++ ++|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l-----~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVV-----DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRA 75 (306)
T ss_pred CCceEEEEeEEEEECCeEEE-----ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccch
Confidence 45789999999999988777 999 9999999999999999999999999999999 9999999988653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+..++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++ ...++++..||+||+||++||+|+
T Consensus 76 ~~~~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDP--DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL 153 (306)
T ss_pred HHHHhcEEEEeccCcCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHH
Confidence 245999999965443 4899999998766665543334456677888777 345778889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+.+|++|++|+|+..||. .+++.++++.+. .+++||+++++.. |++ |++++.|+++++...
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999 566666666432 3688999999876 554 899999999987654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=276.97 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=164.9
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++.|+...++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTAL-----KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred cEEEEEEEEEEeCCeEEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 468899999999987777 888 9999999999999999999999999999999 9999999988543
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.++|++|+...++ ++|+.+|+.++....+.+..+..+++.++++.++ ...++++.+|||||+||+++|+|++.+
T Consensus 75 ~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 75 KRDYGIVFQSYALFP--NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred HCCEEEEeCCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965444 4999999999876555444444567888888887 345788899999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|+++++||++..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999998 34444444433 24799999999877 554 89999999988764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=277.79 Aligned_cols=202 Identities=13% Similarity=0.143 Sum_probs=165.9
Q ss_pred cCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 46 ANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
....++++++++++.|++..++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 9 ~~~~~~L~l~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 9 SSLSPLVELRGISKSFDGKEVI-----SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITH 80 (375)
T ss_pred ccCCceEEEEEEEEEECCeEEE-----eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCC
Confidence 3556789999999999987777 888 9999999999999999999999999999999 9999999988643
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.++|++|+...++ ++|+.+|+.++....+.+.....+++.++++.++ ...++++.+|||||+|||++|++
T Consensus 81 ~~~~~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 81 VPAENRHVNTVFQSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARA 158 (375)
T ss_pred CCHHHCCEEEEecCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 345999999965444 4899999998766554443333456778888777 44678888999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|+++..||.. +++.|+++.+ ..|++|||++++.. |++ |++++.|++.+++.
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999993 4444444433 24799999999877 554 89999999988764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=272.75 Aligned_cols=201 Identities=17% Similarity=0.150 Sum_probs=165.9
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..++++++++++.|+++.++ +++ ++|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l-----~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVV-----NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARA 109 (340)
T ss_pred CceeEEEEEEEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcch
Confidence 34689999999999988888 999 9999999999999999999999999999999 9999999888642
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+..++|++|+...++ .+|+.+|+.+....++.......+++.++++.++ ...+.++.+||+||+||++||+|+
T Consensus 110 ~~~~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL 187 (340)
T PRK13536 110 RLARARIGVVPQFDNLDL--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARAL 187 (340)
T ss_pred HHHhccEEEEeCCccCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHH
Confidence 345999999965443 4899999987665555433333455667777777 346788899999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+.+|+++++|+|+..||+ .+++.+.++.. .++++||+++++.. |++ |++++.|+++++...
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999 56666666543 24689999999877 554 899999999988654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=272.99 Aligned_cols=197 Identities=16% Similarity=0.103 Sum_probs=161.3
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|+. ..++ +++ +++++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L-----~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQAL-----NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTL 72 (343)
T ss_pred CEEEEEEEEEECCCCcceEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcC
Confidence 4678899999953 2456 888 9999999999999999999999999999999 9999999988642
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ 192 (287)
++.++|++|+...++ .+|+++|+.+.....+.+.....+++.++++.++ ...+.++.+||||||||++
T Consensus 73 ~~~~l~~~r~~Ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 73 SNSELTKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred CHHHHHHHhcCEEEEECCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 235999999965433 3899999998766555444445567888898887 3457888899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
||+|++.+|++|++||++..||. .+++.++++.+ ..|++||+++++.+ |++ |++++.|++.++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999 45555555543 24699999999876 554 89999999888753
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=278.89 Aligned_cols=207 Identities=18% Similarity=0.140 Sum_probs=169.5
Q ss_pred CCCccccCcccccccccch------hhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLK------VLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
..|+++++++++.|..+.. -..+..+++ |.+.+||++||+|+||||||||+|+|+|+++ |++|+|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence 6789999999999995321 122334666 9999999999999999999999999999999 99999988775
Q ss_pred C----------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhcc---CCCCCCCCCCcc
Q 023126 121 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN---QGSVYAPSFDHG 186 (287)
Q Consensus 121 ~----------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG 186 (287)
+ ....+.++|||++...++.+|+.+++......+... .+...+++.++++.++. ..++++.+||||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 4 124589999999999999999999999987765433 34445578899999883 467899999999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhh---cC-ceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMF---DE-KWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~---~~-~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
||||++||+||+.+|+++++||++.-||.. +.+.+.++. .. .+|||||++++.+ |++ |++++.|+
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence 999999999999999999999999999993 333333333 32 3799999999988 665 99999997
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
.+++..
T Consensus 514 ~~~v~~ 519 (539)
T COG1123 514 TEKVFE 519 (539)
T ss_pred HHHHhc
Confidence 777654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=275.08 Aligned_cols=196 Identities=13% Similarity=0.166 Sum_probs=162.9
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC--cccccCCCCC------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~--G~i~~~~~~~------ 122 (287)
++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++ |+|.++|...
T Consensus 6 l~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 6 IRIDHLRVAYGANTVL-----DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEECCeEEE-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 6788999999987777 888 9999999999999999999999999999999 999 9999887542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.++|++|+...++ ++|+++|+.++....+.+......++.++++.++ ...++++.+|||||||||++|+|++.+
T Consensus 78 ~r~ig~vfQ~~~l~p--~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFP--HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965443 4899999999876655444444557788888877 346788999999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc-----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD-----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~-----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++|++|+++..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 34455544433 24699999999877 555 89999999998865
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=254.84 Aligned_cols=199 Identities=20% Similarity=0.166 Sum_probs=163.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc---
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--- 124 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~--- 124 (287)
++++++++++++||.-.++ +++ +++++||++|||||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 2 ~~lL~v~~l~k~FGGl~Al-----~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 2 TPLLEVRGLSKRFGGLTAV-----NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred CceeeeccceeecCCEEEE-----eceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCH
Confidence 5788999999999999999 999 9999999999999999999999999999999 999999999876421
Q ss_pred ------eeEEEeCCCCCCCcccCCccccHHHHHHhc-------CCC-----CCchHHHHHHHHHHhc--cCCCCCCCCCC
Q 023126 125 ------VATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLR--NQGSVYAPSFD 184 (287)
Q Consensus 125 ------~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-------~~~-----~~~~~~~~~~~l~~l~--~~~~~~~~~lS 184 (287)
-++--||..-.++ .|||.||+..+...+ +.+ ..+..+++.++|+.++ ...+.+..+||
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~--~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Ls 151 (250)
T COG0411 74 HRIARLGIARTFQITRLFP--GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLS 151 (250)
T ss_pred HHHHhccceeecccccccC--CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCC
Confidence 2566788865444 499999998764321 111 2334567788888888 45677888999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---C-ceEEEeCHHHHHH---HHh----hccccC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~-~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
+|||+|+.||+|++.+|++|++|||...+.. ++.+.++++.+ . .++|.|||+.++. |++ |+++++
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999987 44555555554 2 3499999999998 554 999999
Q ss_pred CChHHHHH
Q 023126 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~ev~~ 257 (287)
|+|+++..
T Consensus 232 G~P~eV~~ 239 (250)
T COG0411 232 GTPEEVRN 239 (250)
T ss_pred CCHHHHhc
Confidence 99999764
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=274.28 Aligned_cols=199 Identities=14% Similarity=0.136 Sum_probs=164.0
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.|++..++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 17 ~~~l~l~~v~~~~~~~~~l-----~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAV-----DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred CceEEEEeEEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 5579999999999887777 888 9999999999999999999999999999999 9999999988643
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
++.++|++|+...++ ++|+.+|+.++....+.+..+..+++.++++.++ ...++++.+|||||+||++||+|++.
T Consensus 89 ~~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 89 YQRPINMMFQSYALFP--HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred HHCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 345999999965444 4899999998876554443344567778888877 34578888999999999999999999
Q ss_pred CccEEEEcCcccCCChhhH----HHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 200 QHKVVIVDGNYLFLDGGVW----KDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 200 ~a~~li~d~~~lllDe~~~----~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+|++|++|+++..||.... +.++++.. ..|++|||++++.. |++ |++++.|++++++.
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999433 33334432 24799999999877 554 89999999998764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=248.42 Aligned_cols=200 Identities=17% Similarity=0.188 Sum_probs=166.0
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
+.+.++++.+.|+.+.++ +++ +.|.+||+|||+|||||||||.+.|+.|+.+ |++|+|.+++.+..
T Consensus 3 ~~L~a~~l~K~y~kr~Vv-----~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 3 STLVAENLAKSYKKRKVV-----NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred cEEEehhhhHhhCCeeee-----eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 467889999999999999 999 9999999999999999999999999999999 99999999987643
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC--chHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhh
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
.-++|+||++..+- .+||.+|+...+........ +...++.++|+.+. ...+.+...||||||+|+.||+
T Consensus 75 ~RArlGigYLpQE~SIFr--~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 75 KRARLGIGYLPQEASIFR--KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred HHhhcCcccccccchHhh--cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence 23899999976554 49999999988776653322 34445778888887 4556778899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhcCc--e-EEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK--W-FIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~--i-~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
||+.+|+.+++|+|+...|+ ++.+.+..+.+.. | +.+|+..+... |.. |++++.|+|++++.+-
T Consensus 153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999 4445555555543 3 56799988776 433 8999999999987653
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=269.05 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=160.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
+++++++++.|+...++ +++ +++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 ~L~i~~l~~~~~~~~~l-----~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 2 SIEIANIKKSFGRTQVL-----NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEEeCCeEEE-----EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 36788999999987777 888 9999999999999999999999999999999 9999999988543 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhc----CCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.++|++|+...++ .+|+.+|+.+..... +.......+++.++++.++ ...++++.+|||||+||++||+|+
T Consensus 74 r~i~~v~Q~~~l~p--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 74 RKVGFVFQHYALFR--HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred CCEEEEecCcccCC--CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 45999999965443 489999999876532 1222233457788888887 345778889999999999999999
Q ss_pred ccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|+++++|+++..||.. +++.+.++.. ..|++|||++++.. |++ |++++.|++++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999993 4444544433 24699999999887 554 89999999988754
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=257.49 Aligned_cols=206 Identities=17% Similarity=0.142 Sum_probs=164.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------ 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~------ 121 (287)
+++++|+++.|......+. +.+++ |.+++||++||+|+||||||||.+.|.|+++. ..-.+|+|.++|.+
T Consensus 1 lL~v~nL~v~f~~~~g~v~-av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVK-AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred CceEeeeEEEEecCCccEE-EEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 3678899999976432222 22777 99999999999999999999999999999961 01156888888863
Q ss_pred ------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhcc-----CCCCCCCCCCcccC
Q 023126 122 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRN-----QGSVYAPSFDHGVG 188 (287)
Q Consensus 122 ------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~-----~~~~~~~~lSgG~~ 188 (287)
..+.|+++|||+....++.+++.+.+......+.. .+++..+++.++|+.++. ..+.++.+|||||+
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 24569999999998888889999988887765432 244567788999999983 33678999999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---C-ceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~-~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|||.||+|++.+|++||.||++..||. ++++.++++.+ . .||||||+.++.+ |++ |++++.|+++
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~ 239 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE 239 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHH
Confidence 999999999999999999999999998 33344444433 2 3699999999988 665 9999999999
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 240 ~i~~ 243 (316)
T COG0444 240 EIFK 243 (316)
T ss_pred HHhc
Confidence 8765
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=266.33 Aligned_cols=207 Identities=15% Similarity=0.072 Sum_probs=161.1
Q ss_pred CCCccccCcccccccccch--------hhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC
Q 023126 48 AQPVFGKTRSLVQNKTSLK--------VLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 118 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~ 118 (287)
..++++++++++.|+.... --..+.+++ +.|++||++||+|+||||||||+++|+|+++ |++|+|.++
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~ 81 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWL 81 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEEC
Confidence 4578899999999963110 001233888 9999999999999999999999999999999 999999998
Q ss_pred CCCC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC--CCCCchHHHHHHHHHHhcc---CCCCCCCC
Q 023126 119 QVKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRN---QGSVYAPS 182 (287)
Q Consensus 119 ~~~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~--~~~~~~~~~~~~~l~~l~~---~~~~~~~~ 182 (287)
|.+. +..++|++|++....++.+|+.+|+.+....+. .......+++.++++.++. ..+.++.+
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~ 161 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence 8642 235999999975333445899999988655432 2323334567788888874 34778889
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccc
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI 247 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v 247 (287)
|||||+||++||+|++.+|++||+||++..||. .+++.+.++.+ ..+++|||++++.. |++ |+++
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999998 34455554433 24699999999976 554 8999
Q ss_pred cCCChHHHHH
Q 023126 248 STGKPPDVAK 257 (287)
Q Consensus 248 ~~G~~~ev~~ 257 (287)
+.|+++++..
T Consensus 242 e~g~~~~i~~ 251 (331)
T PRK15079 242 ELGTYDEVYH 251 (331)
T ss_pred EEcCHHHHHc
Confidence 9999888764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=270.01 Aligned_cols=197 Identities=15% Similarity=0.105 Sum_probs=160.8
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
.++++++++.|+++.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|... .
T Consensus 3 ~l~i~~l~~~~~~~~vl-----~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYGDVVIS-----KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEeCCeEEE-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHhH
Confidence 47889999999987777 888 9999999999999999999999999999999 9999999887542 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ .+|+.+|+.+.....+.......+++.++++.++. ..++++.+|||||+||+++|+|++.+|
T Consensus 75 ~~i~~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 75 RGVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred CCEEEEeCCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 45999999965443 48999999987655444333334567888888873 457788899999999999999999999
Q ss_pred cEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++||++..||.. +++.++++.. ..|++|||++++.. |++ |++++.|+++++..
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999983 4444555432 24799999998876 444 88888999888754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=262.85 Aligned_cols=199 Identities=17% Similarity=0.147 Sum_probs=160.3
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
.+++++++++.|+.+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~i~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVV-----NDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEeCCeEEE-----cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHH
Confidence 468899999999987777 998 9999999999999999999999999999999 9999999887542
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
+..++|++|++..++ .+|+.+|+.+....++.......+++.++++.++. ..+.++.+|||||+||+++|++++.
T Consensus 75 ~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDP--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred HhhcEEEEeccccCCc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 345999999965433 48999999865544443322233456677777763 4477888999999999999999999
Q ss_pred CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 200 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 200 ~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+|+++++|||+..||. .+++.+.++.. ..+++|||++++.. |++ |++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999 45555555533 24699999999876 544 888899998887654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=236.18 Aligned_cols=194 Identities=16% Similarity=0.117 Sum_probs=155.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
+.++++...|+....- . +.|..||+++|+||||||||||+++|+|+.. |.+|+|.++|.+. .+
T Consensus 2 l~L~~V~~~y~~~~~~-------fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGHLPMR-------FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCcceEE-------EEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 4556677777643222 2 5799999999999999999999999999999 9999999998652 45
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++++||++..+. ++||.+|+.++..-.=.-.+.+.+++..++.++| ...++.+.+|||||||||++|+++..+..
T Consensus 72 PVSmlFQEnNLFa--HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 72 PVSMLFQENNLFA--HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred Chhhhhhccccch--hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 6999999976554 4999999987643211124567888999999998 45677888999999999999999999999
Q ss_pred EEEEcCcccCCChh----hHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 203 VVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe~----~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++++||++.-||+. ++..+.++.++ .++|||.++.+.+ |++ ||+.+.|..++...
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 99999999999994 44444455443 3699999999987 555 89999998888653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=266.36 Aligned_cols=189 Identities=17% Similarity=0.205 Sum_probs=155.0
Q ss_pred ccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------------Cce
Q 023126 59 VQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------PDV 125 (287)
Q Consensus 59 ~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------------~~~ 125 (287)
+.|+.+.++ +++ +++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ++.
T Consensus 1 ~~~~~~~~l-----~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~ 72 (363)
T TIGR01186 1 KKTGGKKGV-----NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKK 72 (363)
T ss_pred CccCCceeE-----EeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCc
Confidence 356777777 888 9999999999999999999999999999999 9999999988542 346
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
++|++|+...++ ++|+.+|+.+.....+.+.....+++.++++.++. ..++++.+||||||||++||+|++.+|++
T Consensus 73 i~~v~Q~~~l~~--~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 73 IGMVFQQFALFP--HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred EEEEECCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999865444 48999999988766555444455678888888873 45778889999999999999999999999
Q ss_pred EEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 204 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 204 li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++|+++..||. .+++.+.++.. ..||+|||++++.. |++ |++++.|+++++..
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999999999 34444444432 34799999999876 554 89999999888754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=235.78 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=170.9
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
.++.++++++.++||...++ +++ ++-..|+++.|||.|||||||+++||+=+.. |+.|.|.++|...
T Consensus 3 ~~~~l~v~dlHK~~G~~eVL-----KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~ 74 (256)
T COG4598 3 AENALEVEDLHKRYGEHEVL-----KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKR 74 (256)
T ss_pred cccceehhHHHhhcccchhh-----cceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeee
Confidence 45789999999999999999 999 9999999999999999999999999999988 9999999988532
Q ss_pred -----------------CceeEEEeCCCCCCCcccCCccccHHHHH-HhcCCCCCchHHHHHHHHHHhc--cCCCCCCCC
Q 023126 123 -----------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPS 182 (287)
Q Consensus 123 -----------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~-~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~ 182 (287)
+...++++|. |.++. +||+.||+.... ...+.++.+..++++..|..+| +..+.++..
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~-FNLWs-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~ 152 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQH-FNLWS-HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH 152 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhh-cchhH-HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccc
Confidence 1126889988 55543 599999988753 4567788888899999999999 455678889
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hcccc
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
|||||+||++||+||+.+|+++++|+++..||+ ++++.++++..+ .+++||.|.++.. .++ |.+-+
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 999999999999999999999999999999999 566666777654 4799999999987 554 78888
Q ss_pred CCChHHHHH
Q 023126 249 TGKPPDVAK 257 (287)
Q Consensus 249 ~G~~~ev~~ 257 (287)
+|+|+++..
T Consensus 233 ~G~P~qvf~ 241 (256)
T COG4598 233 EGPPEQVFG 241 (256)
T ss_pred cCChHHHhc
Confidence 999999864
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=263.01 Aligned_cols=206 Identities=16% Similarity=0.126 Sum_probs=161.4
Q ss_pred CCccccCcccccccccchh-----hhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKV-----LCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~-----v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~ 122 (287)
.++++++++++.|+.+... -..+.+++ +.|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 4678999999999632110 01123888 9999999999999999999999999999999 9999999888542
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhcc---CCCCCCCCCCccc
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGV 187 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~ 187 (287)
+..++|++|+++...++.+++.+++.+..... +.......+++.++++.++. ..+.++.+|||||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 23599999998655555689999887755443 23333345577888888874 3477888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
+||++||+|++.+|++||+||++..||. .+++.|.++.+ ..|+||||++++.+ |++ |++++.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999998 34445554433 24699999999976 554 899999998
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 240 ~~~~~ 244 (327)
T PRK11308 240 EQIFN 244 (327)
T ss_pred HHHhc
Confidence 88765
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=243.89 Aligned_cols=200 Identities=16% Similarity=0.131 Sum_probs=166.9
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.++++++++...||...++ .++ +.+++||+++|+|+||||||||+|+|+|+.+ |.+|+|.++|.+..
T Consensus 1 ~~mL~v~~l~~~YG~~~~L-----~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 1 APMLEVENLSAGYGKIQAL-----RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPP 72 (237)
T ss_pred CCceeEEeEeecccceeEE-----eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCH
Confidence 3688999999999998888 888 9999999999999999999999999999999 99999999997643
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhh
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.-++|+||....++. +||.||+..+...... ....+.+.+.++|-++.+..+++..+|||||||.++||+|
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~--LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPR--LTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred HHHHhCCeEeCcccccchhh--CcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHH
Confidence 238999999765554 9999999987654432 1222256677777778888899999999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|+.+|++|++|||...|-+ ++.+.++++.+. +++|.++...+++ |.+ ||++..|+.+++...
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999998 455555666542 3589999999987 433 999999999987543
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=244.15 Aligned_cols=199 Identities=17% Similarity=0.119 Sum_probs=173.6
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----Cce
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDV 125 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----~~~ 125 (287)
+++++++++.||+..++ +++ |.+++|+++|++|+|||||||++++|+|+++ |++|+|.++|.+. .++
T Consensus 2 ~L~ie~vtK~Fg~k~av-----~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSFGDKKAV-----DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhccCceeee-----cceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhh
Confidence 57889999999999999 999 9999999999999999999999999999999 9999999998653 457
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
|||+|.....++. +|+.+.+.|.....|.+.++...++..+|++++ .....++.+||.|++|++.+..++++.|.+
T Consensus 74 IGyLPEERGLy~k--~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 74 IGYLPEERGLYPK--MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred cccChhhhccCcc--CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 9999998665554 999999999999999998888889999999988 456678999999999999999999999999
Q ss_pred EEEcCcccCCChhhHHH----HHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 204 VIVDGNYLFLDGGVWKD----VSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 204 li~d~~~lllDe~~~~~----l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
+|+|+|+..||+.-.+. +.++.+ .+||.||.|+.+.+ +++ |+.|-.|+..++...+
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999933333 333333 34799999999988 665 8889999998887644
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=251.58 Aligned_cols=195 Identities=17% Similarity=0.186 Sum_probs=153.5
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSFGGRTVL-----KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhH
Confidence 3577899999877777 888 9999999999999999999999999999999 9999999887432
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~a 196 (287)
+..++|++|++..++ .+|+.+|+.+....+ +.......+++.++++.++. ..++++.+|||||+||++||++
T Consensus 73 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 73 YRLRRRMGMLFQSGALFD--SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred HHHhcceEEEccCcccCC--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 234899999965433 479999998764432 12222234456777888773 3467888999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++.+|+++++|||+..||. .+++.++++.. .+|++|||++++.. |++ |++++.|+++++.
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999998 44455555432 24699999998865 444 7888888877654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=248.34 Aligned_cols=193 Identities=19% Similarity=0.169 Sum_probs=152.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------C
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~ 123 (287)
++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|... .
T Consensus 1 i~~~~~~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKYGDFEAV-----RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEECCEEee-----eceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHh
Confidence 3578899999887777 888 9999999999999999999999999999999 9999998887532 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..++|++|++...+ .+|+.+|+.+....++.......+++.++++.++. ..+.++.+|||||+||+++|++++.+|
T Consensus 73 ~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 73 RRIGIVFQDLSVDD--ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred hcEEEecCCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35899999975433 47999999876554443322334567788888773 346788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+++++|||+..||. .+++.+.++.. ..|++|||++++.. |++ |++++.|++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999 34444554432 24699999999876 443 77777776554
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=263.95 Aligned_cols=196 Identities=16% Similarity=0.127 Sum_probs=158.0
Q ss_pred ccccCccccccc----ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNK----TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~----~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|+ .+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il-----~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~ 72 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHAL-----NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTAL 72 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEE-----EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcC
Confidence 467889999997 34566 888 9999999999999999999999999999999 9999999987542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
++.++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++. ..++++.+|||||+||++
T Consensus 73 ~~~~~~~~~~~ig~v~q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 73 SEKELRKARRQIGMIFQHFNLLS--SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred CHHHHHHHhcCEEEEeCCCccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 245999999966433 38999999887655554333334567788888873 456788899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
||++++.+|++|++|||+..||. .+++.++++.. ..|++|||++++.. |++ |++++.|+++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999998 45555555532 24699999999876 544 8888889888765
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=261.24 Aligned_cols=202 Identities=16% Similarity=0.142 Sum_probs=159.9
Q ss_pred ccccCccccccccc----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCcccccCCCCCC-
Q 023126 51 VFGKTRSLVQNKTS----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSFDSQVKPP- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~-~~p~~G~i~~~~~~~~- 123 (287)
+++++++++.|+.. .++ +++ |+|++||++||+|+||||||||+++|+|+++. ..|++|+|.++|.+..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAV-----DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR 77 (326)
T ss_pred eEEEeCeEEEECCCCccEEEE-----eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCc
Confidence 67899999999763 456 888 99999999999999999999999999999861 0127899999886421
Q ss_pred -----------ceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhccC-----CCCCCCCCCcc
Q 023126 124 -----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHG 186 (287)
Q Consensus 124 -----------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG 186 (287)
+.++|++|+++...++.+++.+++....... +....+..+++.++|+.++.. .+.++.+||||
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgG 157 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGG 157 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 2599999998654555688888877655433 223333456778889888843 36788899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+||++||+|++.+|++|++||++..||. .+++.+.++.+ ..|++|||++++.+ |++ |++++.|+
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999998 45555555543 24699999999866 554 89999999
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 238 ~~~~~~ 243 (326)
T PRK11022 238 AHDIFR 243 (326)
T ss_pred HHHHhh
Confidence 988764
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=259.19 Aligned_cols=189 Identities=16% Similarity=0.170 Sum_probs=152.7
Q ss_pred cccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------CceeEEEeC
Q 023126 60 QNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLPM 131 (287)
Q Consensus 60 ~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~~~i~~v~q 131 (287)
.|+.+.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. ...++|++|
T Consensus 2 ~y~~~~~l-----~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 2 VYGDFKAV-----DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred eeCCeeEE-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 45666666 888 9999999999999999999999999999999 9999999988543 235899999
Q ss_pred CCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCc
Q 023126 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (287)
Q Consensus 132 d~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~ 209 (287)
++..++ .+|+.+|+.+....++.......+++.++++.++. ..++++.+|||||+||+++|+|++.+|++|++|||
T Consensus 74 ~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 74 YASVDE--DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 965433 48999999887665554333334567788888873 45778889999999999999999999999999999
Q ss_pred ccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 210 YLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 210 ~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+..||+ .+++.+.++.+ ..+++||+++++.. |++ |++++.|+++++...
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999 45555555543 24689999999876 444 889999998887654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=269.39 Aligned_cols=207 Identities=19% Similarity=0.206 Sum_probs=170.1
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC----CcccccCCCC--
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KASSFDSQVK-- 121 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~----~G~i~~~~~~-- 121 (287)
.++++++|+++.|......+.++ +++ |.+.+||++||+|+|||||||+++.|.|+++ +. +|+|.++|.+
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~v-~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~ 78 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPAV-RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLL 78 (539)
T ss_pred CceEEEeceEEEEecCCcceeee-ecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchh
Confidence 45899999999998763222222 666 9999999999999999999999999999998 55 7999888853
Q ss_pred ----------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhcc--CC--CCCCCCCCcc
Q 023126 122 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QG--SVYAPSFDHG 186 (287)
Q Consensus 122 ----------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~--~~~~~~lSgG 186 (287)
..+.++|+||+++..+++.+|+.+.+......++ ....+..+++.++|+.++. .. +.++++||||
T Consensus 79 ~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG 158 (539)
T COG1123 79 GLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGG 158 (539)
T ss_pred cCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCch
Confidence 2356999999999999988999998888776654 3355567788999999983 22 4588899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
||||+.||+|++.+|++||.|||+..||.. +++.|+++.++ .+|||||++++.+ |++ |++++.|+
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 999999999999999999999999999994 44444444432 3699999999988 665 99999999
Q ss_pred hHHHHHHH
Q 023126 252 PPDVAKWR 259 (287)
Q Consensus 252 ~~ev~~~~ 259 (287)
+++++.+.
T Consensus 239 ~~~i~~~p 246 (539)
T COG1123 239 TEEILSNP 246 (539)
T ss_pred HHHHHhcc
Confidence 99988654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=258.10 Aligned_cols=198 Identities=15% Similarity=0.070 Sum_probs=162.6
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
.++++++++.|++..++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~l~~~~l~~~~~~~~~l-----~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNAL-----DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEECCEEEE-----EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHH
Confidence 36789999999987777 898 9999999999999999999999999999999 9999999888543
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
...++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++. ..++++..||+||+||+++|+|++.+
T Consensus 74 ~~~ig~~~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 74 QRNIGYLPEHNPLYL--DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred HhceEEecCCCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 235999999965433 48999999887666655433344567788888773 45778889999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|+++++|+|+..||. .+++.++++.. ..+++||+++++.+ |++ |++++.|+++++...
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999 45555555532 24699999999877 544 889999999987654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=264.18 Aligned_cols=197 Identities=18% Similarity=0.252 Sum_probs=156.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
.+..+++.+.|+...++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 28 ~~~~~~~~~~~~~~~~L-----~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~ 99 (400)
T PRK10070 28 GLSKEQILEKTGLSLGV-----KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAE 99 (400)
T ss_pred cccHHHHHhhcCCeEEE-----EeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHH
Confidence 45566677777766566 888 9999999999999999999999999999999 9999999988542
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
+..++|++|+...++ .+|+.+|+.+.....+.......+++.++++.++. ..++++.+|||||+||++||+
T Consensus 100 l~~~~~~~igyv~Q~~~l~~--~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LAr 177 (400)
T PRK10070 100 LREVRRKKIAMVFQSFALMP--HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLAR 177 (400)
T ss_pred HHHHHhCCEEEEECCCcCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHH
Confidence 135999999965443 48999999987655544333344567788888873 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++.+|++|++||++..||. .+++.+.++.. ..|++|||++++.. +++ |++++.|+++++..
T Consensus 178 AL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 178 ALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 99999999999999999999 44455555432 24699999999876 544 88888898887653
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=245.75 Aligned_cols=193 Identities=17% Similarity=0.150 Sum_probs=151.7
Q ss_pred cccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+. +.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~~il-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAV-----DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeCCCCceee-----cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHH
Confidence 356788899976 6667 888 9999999999999999999999999999999 9999999887543
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
.+.++|++|++..+. .+|+.+|+.+....++.+.....+++.++++.++. ..+.++.+||+||+||+++|++++.
T Consensus 73 ~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 150 (220)
T cd03263 73 ARQSLGYCPQFDALFD--ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG 150 (220)
T ss_pred HhhhEEEecCcCCccc--cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 234899999865433 37999999876555443322234556777877763 4467788999999999999999999
Q ss_pred CccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 200 QHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 200 ~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+|+++++|||+..+|. .+++.+.++.+ ..|++||+++.+.. +++ |++++.|++++
T Consensus 151 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999998 34444544443 34699999998865 443 77777777665
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=265.64 Aligned_cols=197 Identities=18% Similarity=0.181 Sum_probs=161.5
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++.|+.+.++ +++ +.+++||++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 2 ~~L~~~nls~~y~~~~vL-----~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVL-----DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred ceEEEeeEEEEECCEEEE-----EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 478899999999988888 999 9999999999999999999999999999999 9999999988542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhc----CCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
.+.++|++|+...++. +|+.+|+.++...+ +.....+.+++.++++.++. ..++++.+||||||||++||
T Consensus 74 ~~~~~ig~v~q~~~l~~~--~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 74 AASRRVASVPQDTSLSFE--FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HHhcceEEEccCCCCCCC--CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 2458999999754443 89999998754322 11123345677888888873 45778889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++++.+|++|++|||+..||. ++++.|+++.+ ..|++|||++++.+ |++ |++++.|++++++
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999 45555555543 23689999999977 554 8999999999864
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=244.96 Aligned_cols=179 Identities=15% Similarity=0.132 Sum_probs=142.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 1 l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYGSVRAL-----DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeCCeeee-----cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhc
Confidence 3567899999877777 888 9999999999999999999999999999999 9999999887542 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+.++.+|||||+||+++|++++.+|+
T Consensus 73 ~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 73 NIGMVFQDYALFP--HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred cEEEEcCchhhcc--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965433 37999999876544332222234456778887773 3467788999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++++|||+..||. .+++.+.++.+ .++++|||++++..
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9999999999998 44555555432 24699999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=254.62 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=157.8
Q ss_pred ccccCcccccccc-----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKT-----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
.++++++++.|+. +.++ +++ +++.+||++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKAL-----DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEEEEECCCCCcccccee-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCC
Confidence 3678899999974 2456 888 9999999999999999999999999999999 9999999887542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC----CCCCCCCCCcccCCc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~~qr 190 (287)
...++|++|++..... ..|+.+|+.+.....+.......+++.++++.++.. .+.++..|||||+||
T Consensus 74 ~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 74 KKVKLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred cCccHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHH
Confidence 2358999998632222 269999998866555544333445677888887743 567888999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
++||+|++.+|++|++|+++..||. .+++.++++.. .+|++|||++++.. |++ |++++.|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999 45555555542 24699999999865 554 888999998887
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
..
T Consensus 233 ~~ 234 (287)
T PRK13637 233 FK 234 (287)
T ss_pred Hh
Confidence 54
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=246.38 Aligned_cols=195 Identities=16% Similarity=0.138 Sum_probs=154.1
Q ss_pred ccccCccccccccc----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKTS----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|+.+ .++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il-----~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTAL-----KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLL 72 (233)
T ss_pred CeEEecceEEccCCCCceeee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccC
Confidence 36788999999876 666 888 9999999999999999999999999999999 9999999887542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..++ .+|+.+|+.+....++.......+.+.++++.++. ..+.++.+||+||+||++
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 73 SGKELRKARRRIGMIFQHFNLLS--SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred CHHHHHHHHhheEEEccCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHH
Confidence 235899999976443 38999999876544433222234456778888773 346778899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
+|++++.+|+++++|||+..+|. .+++.+.++.. ..|++||+++.+.. +++ |++++.|+++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999998 44455555432 24699999998765 443 788888876665
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=248.20 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=153.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
.++++++++.|+.+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 ~l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 2 SIEVRNVSKRFGDFVAL-----DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEEeEEEEECCEEee-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCccc
Confidence 36788999999887777 898 9999999999999999999999999999999 9999999887532 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCC----CCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~----~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
..++|++|++..++ .+|+.+|+.+.....+. ......+++.++++.++. ..+.++.+||+||+||+++|+++
T Consensus 74 ~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 74 RNVGFVFQHYALFR--HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cceEEEecCCcccC--CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 35899999975443 37999999876443322 111123456677777763 34677889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+.+|+++++|||+..||. .+++.+.++.+ ..|++|||++.+.. +++ |++++.|+++++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999 34455555432 24699999998765 444 7888888877764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=257.77 Aligned_cols=203 Identities=17% Similarity=0.146 Sum_probs=161.0
Q ss_pred CCCCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CcccccC
Q 023126 47 NAQPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDS 118 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~---~G~i~~~ 118 (287)
...++++++++++.|+. ..++ +++ ++|.+||++||+|+||||||||+++|+|+++ |+ +|+|.++
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~ 79 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAV-----NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFN 79 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEE-----eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEEC
Confidence 34578999999999953 3455 888 9999999999999999999999999999998 86 9999998
Q ss_pred CCCC------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhccC-----CCCCC
Q 023126 119 QVKP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ-----GSVYA 180 (287)
Q Consensus 119 ~~~~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~~~-----~~~~~ 180 (287)
|.+. .+.++|++|+++...++.+++.+++.+....+. .......+++.++|+.++.. .+.++
T Consensus 80 G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p 159 (330)
T PRK09473 80 GREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYP 159 (330)
T ss_pred CEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc
Confidence 8643 135999999986555566899998877654432 22223345677888887742 24678
Q ss_pred CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hc
Q 023126 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 245 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr 245 (287)
.+|||||+||++||+|++.+|++||+||++..||. .+++.+.++.+ ..||+|||++.+.. |++ |+
T Consensus 160 ~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ 239 (330)
T PRK09473 160 HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239 (330)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999998 34444444433 24699999999876 554 89
Q ss_pred cccCCChHHHHH
Q 023126 246 HISTGKPPDVAK 257 (287)
Q Consensus 246 ~v~~G~~~ev~~ 257 (287)
+++.|+++++..
T Consensus 240 ive~g~~~~i~~ 251 (330)
T PRK09473 240 TMEYGNARDVFY 251 (330)
T ss_pred EEEECCHHHHHh
Confidence 999999988764
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=246.44 Aligned_cols=195 Identities=18% Similarity=0.129 Sum_probs=152.3
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFGGLVAL-----DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEECCEEEe-----cCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHH
Confidence 3567889999876666 888 9999999999999999999999999999999 9999998887532
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC----------CCchHHHHHHHHHHhcc--CCCCCCCCCCcccCC
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~----------~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~q 189 (287)
...++|++|++..++ .+|+.+|+.+.....+.. .....+++.++++.++. ..+.++.+|||||+|
T Consensus 73 ~~~~i~~v~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 73 ARLGIGRTFQIPRLFP--ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred HhcCEEEEeccccccc--CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 134899999965433 379999998765433211 11223456777887773 346778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
|+++|++++.+|+++++|||+..||. .+++.+.++.+ ..|++|||++++.. +++ |++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 99999999999999999999999998 44555555442 24699999999866 444 777788877765
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 231 ~ 231 (236)
T cd03219 231 R 231 (236)
T ss_pred c
Confidence 3
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=245.55 Aligned_cols=192 Identities=14% Similarity=0.067 Sum_probs=150.2
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCCcccccCCCCC---
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l-----~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|++ + |++|+|.++|...
T Consensus 1 i~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYYGDKHAL-----KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEcCCceee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhc
Confidence 3578899999877777 888 999999999999999999999999999999 8 9999999887542
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhccC--CCCC--CCCCCcccCCc
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ--GSVY--APSFDHGVGDP 190 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~~--~~~~--~~~lSgG~~qr 190 (287)
...++|++|++..+ . +|+.+|+.+....++.... ...+++.++++.++.. .+.. +.+|||||+||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-P--GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR 149 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-c--ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence 23589999996543 3 7999999876544432221 1245667788877743 2344 58999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+++|++++.+|+++++|||+..||. .+++.++++.+ ..|++|||++.+.. +++ |++++.|++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999 44455555443 35799999998765 444 77777777654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=256.93 Aligned_cols=203 Identities=12% Similarity=0.120 Sum_probs=157.5
Q ss_pred CccccCccccccc----ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNK----TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~-~p~~G~i~~~~~~~- 122 (287)
++++++++++.|. ...++ +++ +.|.+||++||+|+||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l-----~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAV-----DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL 76 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEE-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence 4788999999994 34556 888 999999999999999999999999999998510 14889999988542
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhc---CC--CC-CchHHHHHHHHHHhccC-----CCCCC
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQ-----GSVYA 180 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~---~~--~~-~~~~~~~~~~l~~l~~~-----~~~~~ 180 (287)
++.++|++|++....++.+|+.+++.+....+ +. .. .+..+++.++|+.++.. .+.++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p 156 (330)
T PRK15093 77 RLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP 156 (330)
T ss_pred cCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence 13599999997655555689989887643221 10 11 12345678888888853 25778
Q ss_pred CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hc
Q 023126 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 245 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr 245 (287)
.+|||||+||++||+|++.+|++||+||++..||. .+++.+.++.+ ..|+||||++++.. |++ |+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999998 44455555443 24699999999976 554 89
Q ss_pred cccCCChHHHHH
Q 023126 246 HISTGKPPDVAK 257 (287)
Q Consensus 246 ~v~~G~~~ev~~ 257 (287)
+++.|+++++..
T Consensus 237 ive~g~~~~i~~ 248 (330)
T PRK15093 237 TVETAPSKELVT 248 (330)
T ss_pred EEEECCHHHHHh
Confidence 999999888754
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=252.42 Aligned_cols=195 Identities=18% Similarity=0.226 Sum_probs=155.0
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---------
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--------- 122 (287)
...++++.|+...++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 26 ~~~~~~~~~~~~~il-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKTGQTVGV-----NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhcCCceEe-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhh
Confidence 566899999988888 998 9999999999999999999999999999999 9999999887432
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+..+.+||+||+||++||+++
T Consensus 98 ~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 98 ELRRKKISMVFQSFALLP--HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hhhcCcEEEEecCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 235899999965443 37999999876544333222234566778888773 35678889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|++|++|||+..||. .+++.+.++.. ..|++|||++++.. +++ |++++.|+++++..
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999 34444554432 24699999998765 444 78888888877653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=245.53 Aligned_cols=182 Identities=12% Similarity=0.044 Sum_probs=144.9
Q ss_pred CCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 49 QPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
.|+++++++++.|+. ..++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~ 74 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVL-----HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMS 74 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeE-----EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcC
Confidence 367899999999974 3456 888 9999999999999999999999999999999 9999999988542
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCC
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~q 189 (287)
...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+..+.+|||||+|
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q 152 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLP--DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQ 152 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence 135899999965433 37999999876443333222334567788888873 345677899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+++|++++.+|+++++|||+..||. .+++.+.++.. ..|++|||++++..
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 99999999999999999999999999 44555555532 24699999999765
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=255.45 Aligned_cols=197 Identities=11% Similarity=0.068 Sum_probs=157.8
Q ss_pred ccccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
.++++++++.|+.. .++ +++ +.|++||+++|+|+||||||||+++|+|+++ |++|+|.+++...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l-----~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~ 73 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKAL-----DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKN 73 (305)
T ss_pred EEEEEEEEEEECCCCCccccce-----eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceeccc
Confidence 36788999999753 355 888 9999999999999999999999999999999 9999998865321
Q ss_pred ------------------------------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHH
Q 023126 123 ------------------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN 171 (287)
Q Consensus 123 ------------------------------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 171 (287)
.+.++|++|++. .++. .|+.+|+.++....+.+.....+++.++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL 151 (305)
T ss_pred ccccccccccccccccccccccccchHHHHHhceEEEeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 234899999853 3333 6999999987666555444445677888888
Q ss_pred hcc---CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH-
Q 023126 172 LRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ- 240 (287)
Q Consensus 172 l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~- 240 (287)
++. ..++++.+|||||+||++||++++.+|++|++|+++..||. .+++.+.++.+ .+|++|||++.+..
T Consensus 152 ~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 152 VGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred cCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 874 25678889999999999999999999999999999999999 44455555433 24699999998876
Q ss_pred --HHh----hccccCCChHHHHH
Q 023126 241 --RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 241 --rv~----gr~v~~G~~~ev~~ 257 (287)
|++ |++++.|+++++..
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhc
Confidence 555 89999999888653
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=230.91 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=161.6
Q ss_pred CccccCcccccccccc--hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---C
Q 023126 50 PVFGKTRSLVQNKTSL--KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---P 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~--~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~ 123 (287)
+.+.+++++..|..+. ++ +++ +.|.+||.+.++||||||||||+++++|+.. |+.|+|.+++... .
T Consensus 2 ~~l~~~~~sl~y~g~~~~~l-----e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPg 73 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSAL-----EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPG 73 (259)
T ss_pred ceeehhheEEecCCcchhhh-----hccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCC
Confidence 3456677888888766 55 787 9999999999999999999999999999999 9999999988642 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..-++++|++-.++ ++++.+|++|+++..|.+++...+.+.+.+..++ ...++++-+|||||+||+.+|+|++.+|
T Consensus 74 aergvVFQ~~~LlP--Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 74 AERGVVFQNEALLP--WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred ccceeEeccCccch--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCc
Confidence 34688999987665 5999999999999999998888888899998888 4567788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh------hccccCCChH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL------KRHISTGKPP 253 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~------gr~v~~G~~~ 253 (287)
+.|++|+++-.+|. .+++.+.+++.. .++||||.+++.- |++ ||+++.=+++
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999997 555566666653 3699999999876 554 6777654333
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=244.21 Aligned_cols=195 Identities=19% Similarity=0.195 Sum_probs=152.2
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRYGKRKVV-----NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEeCCEEee-----ccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHH
Confidence 3577899999877777 888 9999999999999999999999999999999 9999999887532
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
...++|++|++..++ .+|+.+|+.+....++.......+++.++++.++. ..+..+..||+||+||+++|++++.
T Consensus 73 ~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 73 ARLGIGYLPQEASIFR--KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred HhccEEEecCCccccc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 134899999975433 37999999876443332222233456677777763 3467788999999999999999999
Q ss_pred CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 200 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 200 ~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+|+++++|+|+..||. .+++.++++.. ..|++|||++.+.. +++ |++++.|+.+++.
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999998 34444444432 24689999998776 444 7787788777653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=249.60 Aligned_cols=200 Identities=13% Similarity=0.162 Sum_probs=156.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..++++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 4 ~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~ 75 (269)
T PRK11831 4 VANLVDMRGVSFTRGNRCIF-----DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMS 75 (269)
T ss_pred ccceEEEeCeEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccC
Confidence 34678999999999887777 888 9999999999999999999999999999999 9999999887432
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|+...++ .+|+.+|+.+...... ........++.+.++.++. ..+.++.+|||||+||++
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 76 RSRLYTVRKRMSMLFQSGALFT--DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAA 153 (269)
T ss_pred hhhHHHHhhcEEEEecccccCC--CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 235899999965433 3799999987543321 1222223456677887773 346778899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
||++++.+|+++++|+|+..||. .+++.+.++.. .+|++|||++.+.. +++ |++++.|+++++..
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999 34445555432 24699999998866 443 78888888877643
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=244.86 Aligned_cols=198 Identities=16% Similarity=0.104 Sum_probs=155.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++++++.|+.+.++ +++ +.+.+|+++||+||||||||||+++|+|+++ |++|+|.++|....
T Consensus 1 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 1 ALEVAGLSFAYGARRAL-----DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAA 72 (236)
T ss_pred CEEEEeeEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhh
Confidence 35678999999877777 888 9999999999999999999999999999999 99999998875421
Q ss_pred -ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 124 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 124 -~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
..++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++. ..+.++.+|||||+||+++|++++.+
T Consensus 73 ~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 73 LARLGVVFQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred hhhEEEeCCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 35899999865433 37999999876544332222234456777877763 34677889999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~~ 258 (287)
|+++++|+|+..||. .+++.+.++.+ ..+++||+++.+.. +++ |++++.|+++++...
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999998 44455555542 24699999999865 443 777888887776543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=243.38 Aligned_cols=196 Identities=17% Similarity=0.139 Sum_probs=153.1
Q ss_pred cccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 52 FGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++++++++.|+. +.++ +++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNGKKAL-----KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCccEEE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhH
Confidence 356788999986 6667 888 9999999999999999999999999999999 9999999887542
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHh--------cCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccC
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 188 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~--------~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~ 188 (287)
...++|++|+...++ .+|+.+|+.+.... .+.......+++.++++.++. ..+.++.+|||||+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIE--RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred HHHHHhccEEEcccCcccc--cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence 134899999965443 37999998764321 111112234566777887773 44678889999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
||+++|++++.+|+++++|||+..||. .+++.++++.+ ..|++|||++.+.. +++ |++++.|+++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHH
Confidence 999999999999999999999999998 45555555532 24699999999875 444 7888888887
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 231 ~~~~ 234 (241)
T cd03256 231 ELTD 234 (241)
T ss_pred HhhH
Confidence 7643
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-33 Score=240.59 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=142.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 1 i~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFGNVTAL-----DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEECCeeee-----eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 3567889999877666 888 9999999999999999999999999999999 9999999887532 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ ..|+.+|+.+.....+.......+++.++++.++. ..+.++.+||+||+||+++|++++.+|+
T Consensus 73 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 73 DIAMVFQNYALYP--HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred eEEEEecChhhcc--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999975433 37999999876544332222234456777887763 3567888999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++++|||+..||. .+++.++++.+ ..|++|||++++..
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999 35555555532 24699999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-33 Score=241.24 Aligned_cols=180 Identities=12% Similarity=0.025 Sum_probs=142.9
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
+++++++++.|+. +.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~ 72 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPAL-----DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRG 72 (216)
T ss_pred CeEEEEEEEEecCCCeeEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcCh
Confidence 3678899999964 3466 888 9999999999999999999999999999999 9999999987542
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..++++.+|||||+||+++|
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 73 REIPFLRRHIGMVFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred hHHHHHHHhceEEecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 135899999965443 37999999886554433222234567788888773 45677889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++++.+|+++++|||+..||. .+++.+.++.+ ..|++|||++++..
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVET 203 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999999999 34444554432 24699999998764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-33 Score=250.58 Aligned_cols=197 Identities=16% Similarity=0.140 Sum_probs=156.0
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
++++++++++.|+ ...++ +++ +++++|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKAL-----KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENE 74 (274)
T ss_pred ceEEEEEEEEEeCCCCeee-----eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCH
Confidence 4788999999995 44566 888 9999999999999999999999999999999 9999999988543
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++..... ..|+.+|+.+.....+.......+++.++++.++ ...++++.+|||||+||+++|+|+
T Consensus 75 ~~~~~~i~~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVF-SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred HHHHhhEEEEecChhhhhc-cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 2358999998632222 2699999987654443332233456677788777 345678889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
+.+|+++++|+++..||. .+++.+.++.+ ..+++|||++.+.+ |++ |++++.|+++++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999 44555555543 34699999999866 544 888888987654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-33 Score=252.32 Aligned_cols=196 Identities=11% Similarity=0.062 Sum_probs=157.5
Q ss_pred cccCcccccccc-----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 52 FGKTRSLVQNKT-----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~-----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++.|+. ..++ +++ ++|++||+++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 74 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRAL-----YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAG 74 (290)
T ss_pred EEEEEEEEEECCCCcccccce-----eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccc
Confidence 678899999974 3456 888 9999999999999999999999999999999 9999999988543
Q ss_pred ---------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCC
Q 023126 123 ---------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ---------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~q 189 (287)
...++|++|++. .++. .|+.+|+.+.....+.+.....+++.++++.++.. .+.++.+|||||+|
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 75 KKNKKLKPLRKKVGIVFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMR 152 (290)
T ss_pred cccchHHHHHhhEEEEeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHH
Confidence 135899999863 2333 69999998876555444333345677888888843 46788899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
|++||++++.+|++|++|+++..||. .+++.+.++.. .+|++|||++++.. |++ |++++.|++.+
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999 44455555532 24699999999876 555 88899998888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 233 ~~~ 235 (290)
T PRK13634 233 IFA 235 (290)
T ss_pred Hhc
Confidence 653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-33 Score=240.35 Aligned_cols=180 Identities=12% Similarity=0.052 Sum_probs=140.8
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---CceeEE
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATV 128 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~~~i~~ 128 (287)
+++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|... ...++|
T Consensus 1 ~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGGHPVL-----EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGY 72 (213)
T ss_pred CcccceeEECCEEee-----ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEE
Confidence 357888999877667 888 9999999999999999999999999999999 9999999988643 345999
Q ss_pred EeCCCCCCCcccCCccccHHHHHHhcC----CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 129 LPMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 129 v~qd~~~~~~~~ltv~e~i~~~~~~~~----~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++|++.......+|+.+|+.+...... .......+++.++++.++. ..++++.+|||||+||+++|++++.+|+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 999965422223699999887533211 1112234466777887763 4567888999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++++|||+..||. .+++.+.++.+ ..|++|||++++..
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999999999 34455555442 24699999998764
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-33 Score=240.90 Aligned_cols=192 Identities=16% Similarity=0.124 Sum_probs=149.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+...++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGYGKSQIL-----FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeecCCeeEe-----eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHH
Confidence 3578889999876666 888 9999999999999999999999999999999 9999999887432
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHh---ccCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---RNQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++..++ .+|+.+|+.+....++ .....+++.++++.+ ....+.++.+||+||+||+++|++++
T Consensus 73 ~~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 73 ARAGIGYVPEGRRIFP--ELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred HhcCeEEeccccccCC--CCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 234899999975433 4799999987654332 122233445555555 24456788899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
.+|+++++|+|+..||. .+++.+.++.. ..|++|||++++.. +++ |++++.|+++++
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999 45555555542 24699999998766 443 677777776654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-33 Score=245.83 Aligned_cols=203 Identities=16% Similarity=0.119 Sum_probs=158.2
Q ss_pred cCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC---
Q 023126 46 ANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--- 121 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~--- 121 (287)
|.++++++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~il-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 72 (258)
T PRK11701 1 MMDQPLLSVRGLTKLYGPRKGC-----RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQL 72 (258)
T ss_pred CCCCceEEEeeeEEEcCCceee-----eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCccccc
Confidence 3456789999999999887777 888 9999999999999999999999999999999 999999988864
Q ss_pred --C------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhccC---CCCCCCCC
Q 023126 122 --P------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSF 183 (287)
Q Consensus 122 --~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~l 183 (287)
. ...++|++|++.......+++.+|+.+....++.. ......++.++++.++.. .+..+.+|
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 152 (258)
T PRK11701 73 RDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF 152 (258)
T ss_pred cccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccC
Confidence 2 12489999997433333468888887643322211 112244567778877742 36778899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hcccc
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
||||+||+++|++++.+|+++++|+|+..||.. +++.++++.. ..|++||+++.+.. +++ |++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999993 4444544432 23699999999875 444 88888
Q ss_pred CCChHHHH
Q 023126 249 TGKPPDVA 256 (287)
Q Consensus 249 ~G~~~ev~ 256 (287)
.|+++++.
T Consensus 233 ~~~~~~~~ 240 (258)
T PRK11701 233 SGLTDQVL 240 (258)
T ss_pred eCCHHHHh
Confidence 89888764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-33 Score=240.09 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=143.2
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----Ccee
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVA 126 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----~~~i 126 (287)
++++++++.|+.+.++ +++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|... ...+
T Consensus 1 l~~~~l~~~~~~~~~l-----~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFGRVTAL-----DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEECCEEEE-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccE
Confidence 3567888999877677 888 9999999999999999999999999999999 9999999988653 3458
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|++..++ .+|+.+|+.+....++.......+.+.++++.++. ..+.++.+||+||+||+++|++++.+|+++
T Consensus 73 ~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l 150 (210)
T cd03269 73 GYLPEERGLYP--KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150 (210)
T ss_pred EEeccCCcCCc--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999975433 37999999876544443333334566778887773 345678899999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++|||+..+|. .+++.++++.. ..+++|||++.+..
T Consensus 151 llDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 193 (210)
T cd03269 151 ILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEE 193 (210)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999998 34455554432 24699999998765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-33 Score=258.19 Aligned_cols=193 Identities=17% Similarity=0.153 Sum_probs=157.3
Q ss_pred CcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC----CC-------
Q 023126 55 TRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----KP------- 122 (287)
Q Consensus 55 ~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~----~~------- 122 (287)
..+.+.||...++ +++ +.+++||+++|+|+||||||||+++|+|+++ |++|+|.++|. +.
T Consensus 28 ~~~~~~~g~~~~l-----~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~ 99 (382)
T TIGR03415 28 EEILDETGLVVGV-----ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAAT 99 (382)
T ss_pred HHHHHhhCCEEEE-----EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHH
Confidence 3566788888888 888 9999999999999999999999999999999 99999999873 11
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
.+.++|++|+...++ .+|+.+|+.++....+.+.....+++.++++.++. ..+.++.+|||||+||++||+
T Consensus 100 l~~~r~~~i~~vfQ~~~l~p--~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 100 LRRLRTHRVSMVFQKFALMP--WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLAR 177 (382)
T ss_pred HHHHhcCCEEEEECCCcCCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 135999999965443 48999999987655554444445677888888884 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|++|++|+++..||. .+++.+.++.. ..||+|||++++.+ |++ |++++.|+++++..
T Consensus 178 ALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 178 AFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999 44455555433 24799999999876 554 89999999988753
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-32 Score=222.48 Aligned_cols=188 Identities=16% Similarity=0.092 Sum_probs=151.1
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+...+++++++.+.-+....-++-+ .++ +.|++||.++|+||||||||||+-+++|+.. |++|+|++.|...
T Consensus 2 ~~~~ii~~~~l~ktvg~~~~~l~IL-~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~l 77 (228)
T COG4181 2 PAENIIEVHHLSKTVGQGEGELSIL-KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKL 77 (228)
T ss_pred CccceeehhhhhhhhcCCCcceeEe-ecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhc
Confidence 3344778888777776544333333 555 9999999999999999999999999999999 9999998877642
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCch
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv 191 (287)
...++++||.-...+ .||..||+..+....+-..+.....+.+.|+.++ .....++.+|||||||||
T Consensus 78 dEd~rA~~R~~~vGfVFQSF~Lip--~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRV 155 (228)
T COG4181 78 DEDARAALRARHVGFVFQSFHLIP--NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRV 155 (228)
T ss_pred CHHHHHHhhccceeEEEEeeeccc--cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHH
Confidence 355999999844334 3999999999988877555555667888999988 456778999999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChhhHHHHHHhh----c----CceEEEeCHHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----D----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~----~----~~i~vtHd~~~~~~ 240 (287)
+||+|++..|++|+.|+|+--||...-+.+.++. . ..|+||||...+.+
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R 212 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR 212 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh
Confidence 9999999999999999999999985544544443 2 24799999999887
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-33 Score=239.67 Aligned_cols=178 Identities=16% Similarity=0.080 Sum_probs=141.6
Q ss_pred cccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 52 FGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
++++++++.|+. +.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~~~~il-----~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~ 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQAL-----KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLS 72 (218)
T ss_pred CeEeeeEEEecCCCcceeEE-----eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcc
Confidence 356788999976 5666 888 9999999999999999999999999999999 9999999887532
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 150 (218)
T cd03255 73 EKELAAFRRRHIGFVFQSFNLLP--DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVA 150 (218)
T ss_pred hhHHHHHHhhcEEEEeeccccCC--CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHH
Confidence 235899999965443 37999999886544433222234466778888773 346778899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
+|++++.+|+++++|||+..||. .+++.+.++.+ ..|++||+++++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 99999999999999999999999 44555555533 2468999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-33 Score=250.97 Aligned_cols=197 Identities=16% Similarity=0.115 Sum_probs=156.7
Q ss_pred ccccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
+++++++++.|+.. .++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l-----~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRAL-----FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSS 72 (288)
T ss_pred CEEEEEEEEEeCCCCcccccce-----eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECcc
Confidence 46788999999742 245 788 9999999999999999999999999999999 9999999988542
Q ss_pred ----------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccC
Q 023126 123 ----------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVG 188 (287)
Q Consensus 123 ----------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~ 188 (287)
...++|++|++. .++. .|+.+|+.+....++.+......++.++++.++. ..+..+..|||||+
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqk 150 (288)
T PRK13643 73 TSKQKEIKPVRKKVGVVFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQM 150 (288)
T ss_pred ccccccHHHHHhhEEEEecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHH
Confidence 234899999863 2333 5999999987666554433344567788888774 24678889999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
||++||++++.+|++|++|+++..||. .+++.+.++.+ .++++|||++.+.. |++ |++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999 34444444432 24699999998865 555 89999999988
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-33 Score=249.49 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=158.1
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++++.|+. +.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 74 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTL-----NDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEE 74 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeee-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcC
Confidence 46889999999974 3356 888 9999999999999999999999999999999 9999999988543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++...+. ..|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++||+
T Consensus 75 ~~~~~~~~i~~v~q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAr 153 (279)
T PRK13650 75 NVWDIRHKIGMVFQNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAG 153 (279)
T ss_pred cHHHHHhhceEEEcChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 1358999998632222 26999999887555444333344567788888773 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|++|++|+++..||. .+++.+.++.+ .+|++|||++.+.. |++ |++++.|++.++..
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 154 AVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999 44555555543 24699999998844 444 78888898887654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-33 Score=249.95 Aligned_cols=197 Identities=15% Similarity=0.081 Sum_probs=156.4
Q ss_pred ccccCcccccccc-----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKT-----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
+++++++++.|+. +.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 73 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGL-----DNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITP 73 (287)
T ss_pred EEEEEEEEEEcCCCCCccccce-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECcc
Confidence 4678899999974 3466 888 9999999999999999999999999999999 9999999988542
Q ss_pred ----------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccC
Q 023126 123 ----------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 188 (287)
Q Consensus 123 ----------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~ 188 (287)
+..++|++|++. .++. +|+.+|+.+....++.......+++.++++.++.. .++++.+|||||+
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 74 ETGNKNLKKLRKKVSLVFQFPEAQLFE--NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQM 151 (287)
T ss_pred ccccchHHHHHhceEEEEeChhhhhcc--chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHH
Confidence 134899999963 2332 79999998765444333233345677888888753 4678889999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
||++||++++.+|++|++|||+..||. .+++.+.++.+ .++++|||++.+.. |++ |++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999 44455555432 24699999999876 554 78888898887
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.6e-33 Score=244.06 Aligned_cols=196 Identities=14% Similarity=0.157 Sum_probs=153.8
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVL-----HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEECCeeee-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcccccccc
Confidence 68899999999877777 888 9999999999999999999999999999999 9999998876431
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHh-cCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qr 190 (287)
...++|++|++..++ .+|+.+|+.+.... .+.......+++.++++.++. ..+.++.+|||||+||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFP--HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 235899999965443 37999999875332 222222233456777887773 3467788999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+++|++++.+|+++++||++..||.. +++.+.++.+ ..|++|||++.+.. |++ |++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999983 4444444432 24699999998865 444 7888888877764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-33 Score=240.88 Aligned_cols=184 Identities=16% Similarity=0.043 Sum_probs=145.3
Q ss_pred cCCCCccccCccccccccc----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 46 ANAQPVFGKTRSLVQNKTS----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
|+.+++++++++++.|+.. .++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~~~l-----~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~ 72 (228)
T PRK10584 1 MPAENIVEVHHLKKSVGQGEHELSIL-----TGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQ 72 (228)
T ss_pred CCcCceEEEeeeEEEccCCCcceEEE-----eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCE
Confidence 3466789999999999752 356 888 9999999999999999999999999999999 99999998875
Q ss_pred CC------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcc
Q 023126 121 KP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHG 186 (287)
Q Consensus 121 ~~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG 186 (287)
.. ...++|++|++..+. .+|+.+|+.+.....+.......+++.++++.++. ..+..+..||+|
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 150 (228)
T PRK10584 73 PLHQMDEEARAKLRAKHVGFVFQSFMLIP--TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGG 150 (228)
T ss_pred EcccCCHHHHHHHHhheEEEEEcccccCC--CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHH
Confidence 32 135899999965433 37999999875433332222334567788888773 346678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
|+||+++|++++.+|+++++|+|+..||. .+++.++++.. .+|++|||++.+.
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 99999999999999999999999999998 44455554432 2468999999864
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-33 Score=243.51 Aligned_cols=196 Identities=16% Similarity=0.148 Sum_probs=152.3
Q ss_pred ccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.|+ .+.++ +++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~l~~~~l~~~~~~~~~il-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQAL-----KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGK 72 (243)
T ss_pred CeEEEeeeeecCCCccee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHH
Confidence 356789999997 66666 888 9999999999999999999999999999999 9999999887542
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhc--------CCCCCchHHHHHHHHHHhcc--CCCCCCCCCCccc
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 187 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--------~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~ 187 (287)
...++|++|++..++ .+|+.+|+.+..... +.......+++.++++.++. ..+.++.+|||||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ 150 (243)
T ss_pred HHHHHHhheEEEcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 234899999965443 379999987542211 11112234567778887773 4467888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
+||++||++++.+|+++++|||+..||. .+.+.+.++.. ..|++|||++.+.. +++ |++++.|++
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCH
Confidence 9999999999999999999999999998 34455555432 24689999999865 444 788888887
Q ss_pred HHHH
Q 023126 253 PDVA 256 (287)
Q Consensus 253 ~ev~ 256 (287)
+++.
T Consensus 231 ~~~~ 234 (243)
T TIGR02315 231 SELD 234 (243)
T ss_pred HHhC
Confidence 7753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-33 Score=248.91 Aligned_cols=199 Identities=17% Similarity=0.113 Sum_probs=159.7
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
++++++++++.|+ .+.++ +++ +++++||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 4 YILKVEELNYNYSDGTHAL-----KGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRK 75 (283)
T ss_pred ceEEEEeEEEEeCCCCeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcc
Confidence 4789999999996 45666 888 9999999999999999999999999999999 9999999988543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++..... ..|+.+|+.+....++.+.....+++.++++.++. ..+.++..||+||+||++||+
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lar 154 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 154 (283)
T ss_pred hHHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 1348999999632222 26999999876555444433334567788888873 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|++|++|+++..||. .+++.+.++.. .++++|||++++.. |++ |++++.|+++++..
T Consensus 155 aL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999 34455555543 24689999999875 554 88999999888754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-33 Score=241.61 Aligned_cols=194 Identities=13% Similarity=0.061 Sum_probs=150.8
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYGQSHIL-----RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeCCeEEe-----cceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHH
Confidence 3568899999877777 888 9999999999999999999999999999999 9999999887432
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHh---ccCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---RNQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++..++ .+|+.+|+.+....++.. ..+...+.++.+ ....+.++.+|||||+||+++|++++
T Consensus 73 ~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 73 ARAGIAYVPQGREIFP--RLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred HHhCeEEeccCCcccC--CCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 235899999975433 479999998765433221 122234444444 34567788899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
.+|+++++|+|+..||. .+++.+.++.. ..|++||+++++.. +++ |++++.|+.+++..+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~~~ 222 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcChH
Confidence 99999999999999999 44455555432 24699999999875 444 788888888776443
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-33 Score=240.45 Aligned_cols=179 Identities=15% Similarity=0.044 Sum_probs=143.7
Q ss_pred cccCccccccccc----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 52 FGKTRSLVQNKTS----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
++++++++.|+.+ .++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 l~~~~v~~~~~~~~~~~~il-----~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~ 73 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAV-----DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEP 73 (218)
T ss_pred eEEEEEEEecCCCCccceee-----cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCH
Confidence 5678899999865 566 888 9999999999999999999999999999999 9999999887542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
.+.++|++|++..+. .+|+.+|+.+....++.......+++.++++.++. ..++++.+|||||+||+++|+++
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (218)
T cd03266 74 AEARRRLGFVSDSTGLYD--RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARAL 151 (218)
T ss_pred HHHHhhEEEecCCcccCc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHH
Confidence 235899999975433 37999999876554443322334567788888773 34678889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.+|+++++|||+..||. .+++.+.++.. ..|++|||++.+..
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVER 201 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999998 44455555432 34699999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-33 Score=247.70 Aligned_cols=198 Identities=16% Similarity=0.132 Sum_probs=154.0
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ml~~~~l~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 1 MLATSDLWFRYQDEPVL-----KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred CeEEEEEEEEcCCcccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCH
Confidence 46788999999877777 888 9999999999999999999999999999999 9999999887542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+..++|++|++..... ..++.+|+.+.....+.......+++.++++.++ ...+.++.+|||||+||+++|+++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred HHHHhheEEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 1348999998642222 2467888877544443322222345667777776 345677889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|+++++|||+..||. .+++.+.++.. ..|++|||++.+.. +++ |++++.|+++++..
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999 34455555432 24689999999865 444 78888898877643
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-32 Score=242.80 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=153.0
Q ss_pred ccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 53 GKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
+++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~l~~~~~~~~~~l-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 2 EFENVTKRYGGGKKAV-----NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred EEEEEEEEeCCcceEe-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 56788899987 5666 888 9999999999999999999999999999999 9999999887542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC----CCCCCCCCCcccCCchhhhhhhc
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .+.++.+||+||+||+++|++++
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 74 RRKIGYVIQQIGLFP--HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred hcceEEEccCccccC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 235899999975443 379999998765443332222345677888888743 46778899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
.+|+++++|+|+..+|. .+++.+.++.+ ..|++||+++.+.. +++ |++++.|+++++.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999998 34455555432 24699999998765 444 7888888777653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-32 Score=241.66 Aligned_cols=197 Identities=15% Similarity=0.128 Sum_probs=154.9
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
++++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|....
T Consensus 1 ~~i~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKAL-----NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred CeEEEEeeEEEcCCeEEe-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHH
Confidence 457889999999877667 888 9999999999999999999999999999999 99999999885431
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcC--------CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCC
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 189 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~--------~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~q 189 (287)
..++|++|++..++ .+|+.+|+.+...... .......+++.++++.++. ..+..+..|||||+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~q 150 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFE--NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQ 150 (242)
T ss_pred HHHhcCeeEeccccccCC--CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 24899999865443 3799999987543110 1111234466778887773 346778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|+++|++++.+|+++++|+|+..||. .+++.++++.. ..|++||+++++.. +++ |++++.|+++++.
T Consensus 151 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 151 WLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999 34455554433 34699999999876 444 7888888877764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-32 Score=242.26 Aligned_cols=195 Identities=17% Similarity=0.166 Sum_probs=153.3
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +++.+|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 l~~~~l~~~~~~~~il-----~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFGPTQVL-----HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEECCeEEe-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 5778999999877777 888 9999999999999999999999999999999 9999999887542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++..++ .+|+.+|+.+... ..+.......+++.++++.++. ..+.++..||+||+||+++|+++
T Consensus 74 ~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFP--HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred HHhhceEEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 234899999865443 3799999977532 2222222234456778887773 34678889999999999999999
Q ss_pred ccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+.+|+++++|+++..+|.. +++.+.++.+ ..|++||+++++.. |++ |++++.|++.++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999993 4444444432 24699999999865 444 7888888877754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-32 Score=244.14 Aligned_cols=197 Identities=18% Similarity=0.211 Sum_probs=154.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~l~~~~l~~~~~~~~il-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLGGRTLL-----DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeCCeeee-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHH
Confidence 47788999999887777 888 9999999999999999999999999999999 9999999887532
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhc-
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG- 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~- 198 (287)
...++|++|++...+ .+|+.+|+.+.....+.......+++.++++.++. ..+..+.+|||||+||+++|++++
T Consensus 74 ~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 74 LARRRAVLPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred hhhheEEEccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 234899999965433 37999998875432222112233456777877763 457788899999999999999999
Q ss_pred -----cCccEEEEcCcccCCCh----hhHHHHHHhh-c---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 199 -----LQHKVVIVDGNYLFLDG----GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 199 -----~~a~~li~d~~~lllDe----~~~~~l~~~~-~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
.+|+++++|+|+..||. .+.+.+.++. . .+|++|||++.+.. +++ |++++.|+++++..
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 58999999999999998 3445555554 2 24699999998875 544 78888888877643
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-32 Score=237.42 Aligned_cols=178 Identities=15% Similarity=0.033 Sum_probs=141.5
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------C
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~ 123 (287)
++++++++.|+.+.++ +++ +.+++| +++|+||||||||||+++|+|+++ |++|+|.++|... .
T Consensus 1 i~~~~~~~~~~~~~~l-----~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYGKKRAL-----DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEECCEEEE-----cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHH
Confidence 3567889999877677 888 999999 999999999999999999999999 9999999988643 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++. ..+.++.+||+||+||+++|++++.+|
T Consensus 72 ~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 72 RRIGYLPQEFGVYP--NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred hheEEecCCCcccc--cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 45899999976433 37999999876544433322234566777877763 346788899999999999999999999
Q ss_pred cEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
+++++|||+..+|.. +++.++++.. ..|++|||++++..
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 150 SILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 999999999999993 3344444432 24699999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-32 Score=237.29 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=142.9
Q ss_pred cccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---C
Q 023126 52 FGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---P 123 (287)
Q Consensus 52 ~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~ 123 (287)
++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il-----~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~ 72 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTAL-----EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPG 72 (220)
T ss_pred CeEEEEEEEcCCCCcceEEE-----eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccc
Confidence 356788899976 5666 888 9999999999999999999999999999999 9999999887543 3
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..++|++|++..+. .+|+.+|+.+....++.......+++.++++.++. ..++.+..|||||+||+++|++++.+|
T Consensus 73 ~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 150 (220)
T cd03293 73 PDRGYVFQQDALLP--WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP 150 (220)
T ss_pred CcEEEEeccccccc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 46899999975433 37999999876544443322334567778888773 346778899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+++++|||+..||. .+++.+.++.. ..|++||+++++..
T Consensus 151 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 151 DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 99999999999999 45555555432 24699999998754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-33 Score=248.02 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=158.6
Q ss_pred CCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.++++++++++.|+. +.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~ 74 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYAL-----KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEE 74 (279)
T ss_pred CceEEEEEEEEEeCCCCccce-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcC
Confidence 467899999999974 4566 888 9999999999999999999999999999999 9999999988543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++...+. ..|+.+|+.+.....+.+.....+++.++++.++ ...+..+..|||||+||++||+
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lar 153 (279)
T PRK13635 75 TVWDVRRQVGMVFQNPDNQFV-GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAG 153 (279)
T ss_pred cHHHHhhheEEEEeCHHHhcc-cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHH
Confidence 2358999999632222 2699999987655444333333456777888766 3456788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|++|++|+++..||. .+++.++++.+ .++++|||++.+.. |++ |++++.|+++++..
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999 45555655543 23689999999865 444 78888898877653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-32 Score=250.76 Aligned_cols=201 Identities=14% Similarity=0.098 Sum_probs=157.8
Q ss_pred CCCCccccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
...++++++++++.|+.. .++ +++ +++++|+++||+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L-----~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~ 88 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVAL-----NNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDI 88 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccce-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCE
Confidence 455789999999999742 355 888 9999999999999999999999999999999 99999998863
Q ss_pred CC------------------------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC
Q 023126 121 KP------------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 175 (287)
Q Consensus 121 ~~------------------------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 175 (287)
.. .+.++|++|++. .++. .|+.+|+.++....+.+......++.++++.++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 89 YIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred EcccccccccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 21 234899999863 3333 59999998765444333233345667788888742
Q ss_pred ---CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HH
Q 023126 176 ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RV 242 (287)
Q Consensus 176 ---~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv 242 (287)
.+..+.+|||||+||++||++++.+|++|++|+++..||. .+++.+.++.. .+|++|||++++.. |+
T Consensus 167 ~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri 246 (320)
T PRK13631 167 DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEV 246 (320)
T ss_pred hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 4677889999999999999999999999999999999999 34444444432 24699999998765 54
Q ss_pred h----hccccCCChHHHHH
Q 023126 243 L----KRHISTGKPPDVAK 257 (287)
Q Consensus 243 ~----gr~v~~G~~~ev~~ 257 (287)
+ |++++.|+++++..
T Consensus 247 ~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEEECCEEEEeCCHHHHhc
Confidence 4 89999999887643
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-32 Score=241.41 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=153.6
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~~~-- 122 (287)
+++++++++.|+...++ +++ +++++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~ 72 (247)
T TIGR00972 1 AIEIENLNLFYGEKEAL-----KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYD 72 (247)
T ss_pred CEEEEEEEEEECCeeee-----cceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEccc
Confidence 46788999999877666 888 9999999999999999999999999999999 98 99999887542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhccC------CCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~ 187 (287)
...++|++|++.. +. .|+.+|+.+.....+. ......+++.++++.++.. .+.++.+|||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 149 (247)
T TIGR00972 73 KKIDVVELRRRVGMVFQKPNP-FP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ 149 (247)
T ss_pred cccchHHHHhheEEEecCccc-CC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence 2358999998643 32 7999999876544332 1122234567777777643 356788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+|+..||. .+++.+.++.+ ..|++|||++.+.. |++ |++++.|++++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998 34444444432 34699999998866 554 88888898887
Q ss_pred HH
Q 023126 255 VA 256 (287)
Q Consensus 255 v~ 256 (287)
+.
T Consensus 230 ~~ 231 (247)
T TIGR00972 230 IF 231 (247)
T ss_pred HH
Confidence 64
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-32 Score=242.08 Aligned_cols=198 Identities=13% Similarity=0.057 Sum_probs=154.4
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~~~ 122 (287)
.++++++++++.|+.+.++ +++ +++.+|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 2 KFAIETVNLRVYYGSNHVI-----KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNI 73 (253)
T ss_pred cceEEEEeEEEEeCCeeee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEc
Confidence 4578899999999887777 888 9999999999999999999999999999998 74 99999887542
Q ss_pred ----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhcc------CCCCCCCCCC
Q 023126 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRN------QGSVYAPSFD 184 (287)
Q Consensus 123 ----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~------~~~~~~~~lS 184 (287)
...++|++|++..++ .+|+.+|+.+.....+. +.....+++.++++.++. ..+.++.+||
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 151 (253)
T PRK14267 74 YSPDVDPIEVRREVGMVFQYPNPFP--HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLS 151 (253)
T ss_pred cccccChHHHhhceeEEecCCccCC--CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCC
Confidence 135899999965443 37999999876443322 111223455667776653 2456788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|||+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++|||++++.. |++ |++++.|+
T Consensus 152 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999998 34444444432 34699999998765 444 88888898
Q ss_pred hHHHH
Q 023126 252 PPDVA 256 (287)
Q Consensus 252 ~~ev~ 256 (287)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14267 232 TRKVF 236 (253)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-32 Score=241.93 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=154.4
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++.|+.+.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~l~~~~l~~~~~~~~~l-----~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 2 ATLTAKNLAKAYKGRRVV-----EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred ceEEEeCcEEEeCCEEEE-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 368889999999877777 888 9999999999999999999999999999999 9999999887432
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~a 196 (287)
...++|++|++..+. .+|+.+|+.+.....+ ........++.++++.++. ..+.++.+||+||+||+++|++
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (241)
T PRK10895 74 ARARRGIGYLPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151 (241)
T ss_pred HHHHhCeEEeccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence 235899999965443 3799999876543221 1112234456777877763 3467788999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|+|+..+|. .+++.+.++.. ..|++||+++.+.. +++ |++++.|+++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999998 33444444432 24689999987766 443 78888888877643
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-32 Score=234.54 Aligned_cols=178 Identities=13% Similarity=0.091 Sum_probs=139.7
Q ss_pred ccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+. +.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~~~~l~~~~~~~~~~il-----~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYPDGARPAL-----DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecCCCCeeee-----cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHH
Confidence 35788888876 5666 888 9999999999999999999999999999999 9999999887532
Q ss_pred -CceeEEEeCCCCC-CCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 -PDVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~-~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++.. ++ .+|+.+|+.+.....+.......+++.++++.++. ..++++..|||||+||+++|+|++
T Consensus 73 ~~~~i~~~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 150 (211)
T cd03225 73 LRRKVGLVFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred HHhhceEEecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 2358999999632 33 37999999775443332222233456777877773 346788899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+|+++++|||+..||. .+++.+.++.+ ..|++|||++++..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999998 34455555543 34699999998764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-32 Score=235.97 Aligned_cols=175 Identities=16% Similarity=0.071 Sum_probs=141.5
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 1 l~~~~l~~~~~~~~~l-----~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYGKKRVL-----DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEECCeEeE-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHh
Confidence 3577899999877777 888 9999999999999999999999999999999 9999999988653 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ .+|+.+|+.+....++. ..+++.++++.++. ..++++.+||+||+||+++|++++.+|+
T Consensus 73 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 73 RIGALIEAPGFYP--NLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred hEEEecCCCccCc--cCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965433 37999999876543331 34566777777763 4467788999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++++|||+..||. .+++.+.++.. ..|++|||++.+..
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 9999999999998 34444554432 24689999998865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-32 Score=235.90 Aligned_cols=180 Identities=13% Similarity=0.057 Sum_probs=142.0
Q ss_pred ccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.| +.+.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~il-----~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAAL-----HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred CEEEEeeeEEeCCCceee-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHH
Confidence 36788999999 455666 888 9999999999999999999999999999999 9999999887532
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+..+.+|||||+||+++|+
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLP--DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIAR 150 (214)
T ss_pred HHHHHHhheEEEecChhhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 235899999975433 37999999876544332222234566778887773 345677899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++.+|+++++|||+..+|. .+++.++++.+ ..+++||+++++..
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999 34455555432 24699999998764
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-32 Score=239.70 Aligned_cols=202 Identities=12% Similarity=0.076 Sum_probs=154.7
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~- 122 (287)
...|+++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++.. .|++|+|.++|...
T Consensus 2 ~~~~~l~~~~l~~~~~~~~il-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 2 ASPPKMEARGLSFFYGDFQAL-----HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred CCCcEEEEeeeEEEECCeeee-----cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 345789999999999877667 888 999999999999999999999999999986300 04799998887542
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++.. +. .|+.+|+.+.....+... ....+++.+.++.++. ..+.++.+||||
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 153 (253)
T PRK14242 77 DPHVDVVELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153 (253)
T ss_pred ccccCHHHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 2358999999643 33 489999987654433221 1224456677777663 235678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++||++..||. .+++.++++.. .+|++|||++++.. |++ |++++.|+++
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999 34444554432 34689999999865 544 7888888887
Q ss_pred HHH
Q 023126 254 DVA 256 (287)
Q Consensus 254 ev~ 256 (287)
++.
T Consensus 234 ~~~ 236 (253)
T PRK14242 234 QIF 236 (253)
T ss_pred HHH
Confidence 764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-32 Score=240.68 Aligned_cols=198 Identities=14% Similarity=0.014 Sum_probs=154.7
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~- 122 (287)
++++++++++.|+++.++ +++ +++++|+++||+|+||||||||+++|+|+++ | ++|+|.++|...
T Consensus 2 ~~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVL-----DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred ceEEEEeeEEEECCeeee-----ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence 357899999999887777 888 9999999999999999999999999999987 5 699999887542
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
...++|++|++..++ .+|+.+|+.+.....+. ......+.+.++++.++. ..+..+.+|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIP--NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred cCCHHHHhccEEEEeccCccCC--CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 235899999975433 37999999876433222 112223456777877763 2467788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++||+++++.. +++ |++++.|++++
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999 34444544432 24699999998765 444 78888888887
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14247 232 VFT 234 (250)
T ss_pred HHc
Confidence 643
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-32 Score=245.82 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=154.5
Q ss_pred ccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.|+ ...++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ml~~~~l~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 72 (274)
T PRK13644 1 MIRLENVSYSYPDGTPAL-----ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKL 72 (274)
T ss_pred CEEEEEEEEEcCCCCcee-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccH
Confidence 367889999995 44566 888 9999999999999999999999999999999 9999999887543
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++...+. ..|+.+|+.+....++.......+++.++++.++ ...+.++..||+||+||++||+++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 151 (274)
T PRK13644 73 QGIRKLVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL 151 (274)
T ss_pred HHHHhheEEEEEChhhhcc-cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 1348999998643222 2699999987654443332233455677777777 345678889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|+++++|+++..||. .+++.+.++.+ ..+++|||++.+.. |++ |++++.|+++++..
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999998 45556655543 24689999999854 444 78888888887643
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-32 Score=234.30 Aligned_cols=175 Identities=16% Similarity=0.026 Sum_probs=139.0
Q ss_pred ccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----Cce
Q 023126 53 GKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 125 (287)
Q Consensus 53 ~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~~ 125 (287)
+++++++.|+. +.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|... .+.
T Consensus 1 ~~~~l~~~~~~~~~~l-----~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 1 RIENISFSYKKGTEIL-----DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKS 72 (205)
T ss_pred CcccEEEEeCCcCcee-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcc
Confidence 35788899987 6666 888 9999999999999999999999999999999 9999999888653 245
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
++|++|++..... .+|+.+|+.+.....+ ...+++.++++.++. ..+.++.+||+||+||+++|++++.+|++
T Consensus 73 i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 73 IGYVMQDVDYQLF-TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred eEEEecChhhhhh-hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 8999999632222 2699999977543322 223567788888773 45678889999999999999999999999
Q ss_pred EEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 204 VIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 204 li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++|||+..||. .+++.++++.+ ..+++|||++.+..
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAK 191 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999 34444544432 24699999998754
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-32 Score=247.70 Aligned_cols=196 Identities=12% Similarity=0.087 Sum_probs=155.8
Q ss_pred cccCcccccccc-----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 52 FGKTRSLVQNKT-----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~-----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++.|+. +.++ +++ ++|++|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~ 74 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAI-----HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHK 74 (286)
T ss_pred EEEEEEEEEECCCCccccCce-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccc
Confidence 678899999964 2466 888 9999999999999999999999999999999 9999999987542
Q ss_pred ---------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCC
Q 023126 123 ---------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ---------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~q 189 (287)
...++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++.. .+.++.+|||||+|
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q 152 (286)
T PRK13646 75 TKDKYIRPVRKRIGMVFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMR 152 (286)
T ss_pred cccchHHHHHhheEEEecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 235899999863 2332 48999998865544443333445677888888743 35678899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
|+++|++++.+|+++++|+++..||. .+++.++++.+ .++++|||++++.. |++ |++++.|++.+
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999 44455555432 24699999999865 554 88999999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 233 ~~~ 235 (286)
T PRK13646 233 LFK 235 (286)
T ss_pred HHh
Confidence 654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-32 Score=244.73 Aligned_cols=201 Identities=14% Similarity=0.115 Sum_probs=154.8
Q ss_pred CCccccCcccccccc---------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC
Q 023126 49 QPVFGKTRSLVQNKT---------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 118 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~---------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~ 118 (287)
.++++++++++.|+. ..++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~ 73 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAV-----KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLID 73 (267)
T ss_pred cceEEEeceEEEecCCCCccccccccee-----eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEEC
Confidence 457899999999963 2455 888 9999999999999999999999999999999 999999988
Q ss_pred CCCC--------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcc
Q 023126 119 QVKP--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHG 186 (287)
Q Consensus 119 ~~~~--------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG 186 (287)
|... ...++|++|++.....+.+++.+++.+..... ........+.+.++++.++. ..+.++.+||+|
T Consensus 74 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 153 (267)
T PRK15112 74 DHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153 (267)
T ss_pred CEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHH
Confidence 7542 13589999996433333468888887654432 22222233456778888774 235677899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+||+++|++++.+|++|++|||+..||. .+++.+.++.+ .+|++||+++.+.. |++ |++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999 34455555432 24699999999875 444 78888888
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 234 ~~~~~~ 239 (267)
T PRK15112 234 TADVLA 239 (267)
T ss_pred HHHHhc
Confidence 877654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-32 Score=244.54 Aligned_cols=198 Identities=14% Similarity=0.111 Sum_probs=156.3
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.+++++++++.|+ ...++ +++ +++++||++||+|+||||||||+++|+|+++ |++|+|.++|....
T Consensus 2 ~~l~~~~l~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEAL-----NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENI 73 (277)
T ss_pred ceEEEEEEEEEeCCCCcee-----eEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 4578899999995 44466 888 9999999999999999999999999999999 99999998885432
Q ss_pred ----ceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 124 ----DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 124 ----~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
..++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++ ...++.+..||+||+||+++|++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIFS--PTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred HHHHhheEEEecCccccccc--ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 34899999963 2332 699999987654433332223345677788776 34577888999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|+++..||. .+++.++++.. .++++||+++++.. |++ |++++.|+++++..
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999998 44455555432 24699999999876 554 88999999888754
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-32 Score=235.74 Aligned_cols=179 Identities=14% Similarity=0.042 Sum_probs=140.4
Q ss_pred cccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 52 FGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l-----~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~ 73 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVL-----KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLS 73 (221)
T ss_pred EEEEeeeEEccCCCcceEeE-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcC
Confidence 567889999964 3456 888 9999999999999999999999999999999 9999999887532
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..+. .+|+.+|+.+.............+++.++++.++. ..++++.+|||||+||++
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 151 (221)
T TIGR02211 74 SNERAKLRNKKLGFIYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVA 151 (221)
T ss_pred HhHHHHHHHhcEEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 135899999965433 37999999875433322222234456778887773 346778899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+|++++.+|+++++|||+..||. .+++.+.++.+ ..|++|||++++..
T Consensus 152 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 207 (221)
T TIGR02211 152 IARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK 207 (221)
T ss_pred HHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 99999999999999999999998 44455555432 24699999998743
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-32 Score=241.47 Aligned_cols=198 Identities=13% Similarity=0.075 Sum_probs=155.0
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVK 121 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~ 121 (287)
..++++++++++.|+.+.++ +++ +++.+|+++||+|+||||||||+++|+|+++ | ++|+|.++|..
T Consensus 9 ~~~~l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~ 80 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQAL-----KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGED 80 (258)
T ss_pred cceeEEEeeeEEEeCCeeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEE
Confidence 45689999999999877777 888 9999999999999999999999999999987 5 79999887743
Q ss_pred C----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 122 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 122 ~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
. ...++|++|++.. +. +|+.+|+.+....++.......+++.++++.++. ..+.++..|||
T Consensus 81 i~~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 157 (258)
T PRK14268 81 IYEPDVDVVELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSG 157 (258)
T ss_pred cccccchHHHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCH
Confidence 2 2348999998653 32 6999999876544433222223356667776653 24567889999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||+||+++|++++.+|+++++|+++..+|. .+++.++++.. .+|++|||++++.. |++ |++++.|++
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 237 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQT 237 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999 34444544432 34699999999866 444 788888988
Q ss_pred HHHH
Q 023126 253 PDVA 256 (287)
Q Consensus 253 ~ev~ 256 (287)
+++.
T Consensus 238 ~~~~ 241 (258)
T PRK14268 238 RQIF 241 (258)
T ss_pred HHHh
Confidence 8764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=236.13 Aligned_cols=182 Identities=18% Similarity=0.157 Sum_probs=139.9
Q ss_pred ccccCccccccccc----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKTS----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|+.+ .++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKAL-----DDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKL 72 (228)
T ss_pred CeEEEeeeEeccCCCcceeee-----cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccc
Confidence 35678899999765 566 888 9999999999999999999999999999999 9999999887532
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc-hHHH-HHHHHHHhcc---CCCCCCCCCCcccCC
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLL-LLNCLKNLRN---QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~-~~~~-~~~~l~~l~~---~~~~~~~~lSgG~~q 189 (287)
...++|++|++.....+.+|+.+|+.+....++..... ..+. +.++++.++. ..+.++.+||+||+|
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 152 (228)
T cd03257 73 SRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQ 152 (228)
T ss_pred chhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHH
Confidence 23589999997432233489999998765443322111 1122 2466777664 246778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+++|++++.+|+++++|||+..||. .+++.+.++.. .+|++|||++.+..
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999998 34455555432 24699999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-32 Score=240.63 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=144.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---Ccee
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 126 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~~~i 126 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...+
T Consensus 1 ml~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 72 (255)
T PRK11248 1 MLQISHLYADYGGKPAL-----EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAER 72 (255)
T ss_pred CEEEEEEEEEeCCeeeE-----eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcE
Confidence 36788999999876666 888 9999999999999999999999999999999 9999999887543 2348
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+.++..|||||+||+++|++++.+|++|
T Consensus 73 ~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 73 GVVFQNEGLLP--WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred EEEeCCCccCC--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999965433 37999999876544333322234567788888873 346678899999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++|+|+..||. .+++.+.++.. ..|++|||++.+..
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVF 194 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999 44555555422 24699999998866
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-32 Score=269.01 Aligned_cols=202 Identities=16% Similarity=0.133 Sum_probs=160.3
Q ss_pred CCCccccCcccccccc-----------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 48 AQPVFGKTRSLVQNKT-----------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
..++++++++++.|+. ..++ +++ |.|++|+++||+|+||||||||+++|+|+++ |++|+|
T Consensus 310 ~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I 381 (623)
T PRK10261 310 GEPILQVRNLVTRFPLRSGLLNRVTREVHAV-----EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEI 381 (623)
T ss_pred CCceEEEeeeEEEEcCCCccccccCCceEEE-----eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEE
Confidence 3478999999999962 2344 888 9999999999999999999999999999999 999999
Q ss_pred ccCCCCC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhcc---CCCCCC
Q 023126 116 FDSQVKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN---QGSVYA 180 (287)
Q Consensus 116 ~~~~~~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~---~~~~~~ 180 (287)
.++|.+. ...++|++|+++....+.+|+.+|+.+.....+.. .....+++.++++.++. ..++++
T Consensus 382 ~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 461 (623)
T PRK10261 382 IFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461 (623)
T ss_pred EECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc
Confidence 9887532 23589999997533334589999998765443321 22234567788888875 247788
Q ss_pred CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hc
Q 023126 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 245 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr 245 (287)
.+||||||||++||+|++.+|++|++||++..||. .+++.|+++.+ ..|++|||++++.. |++ |+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999 34445544433 24799999999877 554 89
Q ss_pred cccCCChHHHHH
Q 023126 246 HISTGKPPDVAK 257 (287)
Q Consensus 246 ~v~~G~~~ev~~ 257 (287)
+++.|+++++..
T Consensus 542 iv~~g~~~~i~~ 553 (623)
T PRK10261 542 IVEIGPRRAVFE 553 (623)
T ss_pred EEEecCHHHHhc
Confidence 999999888753
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-32 Score=239.96 Aligned_cols=198 Identities=12% Similarity=0.070 Sum_probs=154.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVK 121 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~ 121 (287)
..++++++++++.|+...++ +++ +.+++|++++|+|+||||||||+++|+|+++ | ++|+|.++|..
T Consensus 4 ~~~~l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~ 75 (254)
T PRK14273 4 NEAIIETENLNLFYTDFKAL-----NNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKN 75 (254)
T ss_pred CCceEEEeeeEEEeCCceee-----cceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEe
Confidence 34588999999999877666 888 9999999999999999999999999999998 7 48999887743
Q ss_pred C----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCCCCC
Q 023126 122 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFD 184 (287)
Q Consensus 122 ~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lS 184 (287)
. +..++|++|++..+ . +|+++|+.+.....+.... ...+++.+.++.++. ..+.++.+||
T Consensus 76 i~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (254)
T PRK14273 76 IYSNNFDILELRRKIGMVFQTPNPF-L--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLS 152 (254)
T ss_pred cccccccHHHHhhceEEEeeccccc-c--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCC
Confidence 2 23489999996543 2 7999999876543332111 123455666666653 3467788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|||+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++||+++++.. |++ |++++.|+
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999 34444555432 24689999999866 544 78888898
Q ss_pred hHHHH
Q 023126 252 PPDVA 256 (287)
Q Consensus 252 ~~ev~ 256 (287)
+.++.
T Consensus 233 ~~~~~ 237 (254)
T PRK14273 233 TDELF 237 (254)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-32 Score=240.55 Aligned_cols=198 Identities=17% Similarity=0.176 Sum_probs=154.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
+++++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLAV-----NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPG 74 (255)
T ss_pred CceEEEeeEEEEECCEEEE-----EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCH
Confidence 5679999999999877777 888 9999999999999999999999999999999 9999999888542
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhc----------CCC---C--CchHHHHHHHHHHhc--cCCCCCCC
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----------GAP---W--TFNPLLLLNCLKNLR--NQGSVYAP 181 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----------~~~---~--~~~~~~~~~~l~~l~--~~~~~~~~ 181 (287)
+..++|++|++..++ .+|+.+|+.+..... +.+ . ....+.+.++++.++ ...+.++.
T Consensus 75 ~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFR--EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAG 152 (255)
T ss_pred HHHHhcCeEEeccCcccCC--CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChh
Confidence 123788999875443 379999998753211 100 0 112235667777776 34577888
Q ss_pred CCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hcc
Q 023126 182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRH 246 (287)
Q Consensus 182 ~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~ 246 (287)
+||+||+||+++|++++.+|+++++|+|+..||. .+++.|.++.+ .+|++||+++++.. +++ |++
T Consensus 153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 232 (255)
T PRK11300 153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTP 232 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999998 34455555432 24699999999876 444 788
Q ss_pred ccCCChHHHH
Q 023126 247 ISTGKPPDVA 256 (287)
Q Consensus 247 v~~G~~~ev~ 256 (287)
++.|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (255)
T PRK11300 233 LANGTPEEIR 242 (255)
T ss_pred EecCCHHHHh
Confidence 8888877653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-32 Score=245.58 Aligned_cols=200 Identities=15% Similarity=0.177 Sum_probs=157.9
Q ss_pred CCccccCcccccccc------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 49 QPVFGKTRSLVQNKT------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
.++++++++++.|+. +.++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~ 73 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLAL-----DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLD 73 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCccee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEe
Confidence 467899999999964 3466 888 9999999999999999999999999999999 999999988754
Q ss_pred C---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCc
Q 023126 122 P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDP 190 (287)
Q Consensus 122 ~---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qr 190 (287)
. .+.++|++|++...... .++.+|+.+.....+.......+++.++++.++ ...++++.+||+||+||
T Consensus 74 i~~~~~~~~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 74 TSDEENLWDIRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred ccccccHHHHhhheEEEecChhhhhcc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH
Confidence 2 23589999996322222 578899887655444333333456677888777 34567888999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
++||++++.+|+++++|+++..||. .+++.+.++.+ .++++|||++++.. |++ |++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999 45555555532 24689999999865 444 7888899988875
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 233 ~ 233 (280)
T PRK13633 233 K 233 (280)
T ss_pred c
Confidence 4
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-32 Score=239.80 Aligned_cols=195 Identities=14% Similarity=0.071 Sum_probs=151.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 2 SIQLNGINCFYGAHQAL-----FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEEeeEEEECCeeeE-----eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccc
Confidence 46788999999877767 888 9999999999999999999999999999999 9999999887542
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHH-HhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..++ .+|+.+|+.+.. ...+.......+++.+.++.++. ..+..+..|||||+||++
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWP--HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred hhhHHHHHhheEEEecCccccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 234899999865443 379999987532 22332222233456777877773 346778899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
+|++++.+|+++++||++..||.. +++.+.++.+ ..+++|||.+++.. +++ |++++.|+++++
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999993 3344444332 24699999999865 444 788888877664
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-32 Score=240.52 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=155.5
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
..++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 4 ~~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVL-----KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDK 75 (257)
T ss_pred ccEEEeeeEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEccccccc
Confidence 457899999999887777 888 9999999999999999999999999999999 9999998887432
Q ss_pred ---------------CceeEEEeCCCCCCCcccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhccC---CCCCCCCC
Q 023126 123 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF 183 (287)
Q Consensus 123 ---------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~l 183 (287)
...++|++|++..++ .+|+++|+.+... ..+.......+++.++++.++.. .+.++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~--~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 153 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCC--CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 235899999965433 3799999976432 22222223345677888888742 25678899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|+||+||+++|++++.+|+++++|+|+..||.. +++.+.++.+ ..|++|||++++.. |++ |++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999999999993 3444444432 24699999999876 554 788888
Q ss_pred CChHHHH
Q 023126 250 GKPPDVA 256 (287)
Q Consensus 250 G~~~ev~ 256 (287)
|+++++.
T Consensus 234 ~~~~~~~ 240 (257)
T PRK10619 234 GAPEQLF 240 (257)
T ss_pred CCHHHhh
Confidence 8877764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-32 Score=241.75 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=150.2
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+.+++++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.+++...
T Consensus 8 ~~~~~l~i~~l~~~~~~~~il-----~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~ 79 (257)
T PRK11247 8 NQGTPLLLNAVSKRYGERTVL-----NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEA 79 (257)
T ss_pred cCCCcEEEEEEEEEECCccee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHh
Confidence 456789999999999887777 888 9999999999999999999999999999999 9999998877532
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
...++|++|++..++ .+|+.+|+.+... . ...+++.++++.++. ..+.++.+|||||+||+++|++++.+
T Consensus 80 ~~~i~~v~q~~~l~~--~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 80 REDTRLMFQDARLLP--WKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred hCceEEEecCccCCC--CCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 345899999975433 3799999876421 1 123456777877773 34677889999999999999999999
Q ss_pred ccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 201 HKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 201 a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+++++|||+..||.. +.+.+.++.. ..|++|||++.+.. +++ |++++.|+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 9999999999999983 4444454422 24699999998765 444 67766554
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-32 Score=226.95 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=162.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++|+++...++..+ +++ +.+++||+++|+||||||||||+|.|+|.+. |++|++.++|.+..
T Consensus 1 mi~a~nls~~~~Gr~ll-----~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 1 MIRAENLSYSLAGRRLL-----DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred CeeeeeeEEEeecceec-----cCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHH
Confidence 46788999999999999 999 9999999999999999999999999999999 99999999987532
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC--chHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.-++++|+...-|+ +||.|.+.+++.-++.... ++.+.+.+.+...+ ....+.+.+|||||||||.+|+.|
T Consensus 73 lA~~raVlpQ~s~laFp--Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 73 LARHRAVLPQNSSLAFP--FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred HHHHhhhcccCcccccc--eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence 346889999765554 7999999988765543332 34444677777766 566788999999999999999997
Q ss_pred cc------CccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GL------QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~------~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+. ..|.|++||++.-||- ..++..+++... ++.|-||++.+.. |++ ||+++.|+|++++.
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 43 4568999999999998 456667777665 3588999999887 666 99999999999864
Q ss_pred H
Q 023126 258 W 258 (287)
Q Consensus 258 ~ 258 (287)
.
T Consensus 231 ~ 231 (259)
T COG4559 231 D 231 (259)
T ss_pred H
Confidence 3
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-32 Score=244.55 Aligned_cols=206 Identities=17% Similarity=0.159 Sum_probs=165.8
Q ss_pred CCCccccCcccccccccchhhh------hhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLC------SQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~------~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
..++++++++.+.|--+..++. +..|++ +++++|+.+||+|+||||||||-.+|.++++ +.|+|.+.|.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~----s~G~I~F~G~ 348 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP----SQGEIRFDGQ 348 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC----cCceEEECCc
Confidence 4456777777777754433221 233677 9999999999999999999999999999995 5599999886
Q ss_pred CC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhcc---CCCCCCCCCC
Q 023126 121 KP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRN---QGSVYAPSFD 184 (287)
Q Consensus 121 ~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~---~~~~~~~~lS 184 (287)
+. ++.+.++|||+|.-.++.|||.+.+..++..+.. ..++..+++.++|.++|. ..++++.++|
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFS 428 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFS 428 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccC
Confidence 53 3458999999999989999999999998877652 344556688899999983 4578999999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----C----ceEEEeCHHHHHH---HHh----hccccC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~----~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|||+||++||+|++.+|+.+++|+++..||-.+...+.+++. . .+|||||+.++.. +++ |+++++
T Consensus 429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~ 508 (534)
T COG4172 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508 (534)
T ss_pred cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee
Confidence 999999999999999999999999999999844444444332 2 3699999999987 555 999999
Q ss_pred CChHHHHH
Q 023126 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~ev~~ 257 (287)
|+.+++..
T Consensus 509 G~~~~if~ 516 (534)
T COG4172 509 GPTEAVFA 516 (534)
T ss_pred CCHHHHhc
Confidence 99999764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-32 Score=241.62 Aligned_cols=199 Identities=14% Similarity=0.102 Sum_probs=155.3
Q ss_pred ccccCcccccccc---------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 51 VFGKTRSLVQNKT---------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 51 ~~~~~~~~~~~~~---------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
+++++++++.|+. +.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~ 73 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVL-----TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQ 73 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEe-----eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCE
Confidence 4677888888852 4556 888 9999999999999999999999999999999 99999998875
Q ss_pred CC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhccC---CCCCCCCCCc
Q 023126 121 KP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 185 (287)
Q Consensus 121 ~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSg 185 (287)
.. ...++|++|++.....+.+|+.+|+.+..... ........+++.++++.++.. .+.++..|||
T Consensus 74 ~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 153 (265)
T TIGR02769 74 DLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSG 153 (265)
T ss_pred EccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCH
Confidence 32 23599999996422333479999987654432 222223345677888888742 4678889999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||+||+++|++++.+|++|++||++..||.. +++.+.++.+ .+|++|||++.+.. +++ |++++.|
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 233 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEEC 233 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEEC
Confidence 9999999999999999999999999999983 5555655532 24699999999865 444 7888889
Q ss_pred ChHHHHH
Q 023126 251 KPPDVAK 257 (287)
Q Consensus 251 ~~~ev~~ 257 (287)
+++++..
T Consensus 234 ~~~~~~~ 240 (265)
T TIGR02769 234 DVAQLLS 240 (265)
T ss_pred CHHHHcC
Confidence 8888653
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-32 Score=238.90 Aligned_cols=198 Identities=11% Similarity=0.078 Sum_probs=153.9
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~- 122 (287)
++++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~l~i~~v~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~ 74 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAV-----EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLY 74 (258)
T ss_pred ccEEEeeEEEEECCEeee-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEecc
Confidence 478899999999877777 888 9999999999999999999999999999986 5 699999887542
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|+...++ .+|+.+|+.+.....+. ......+++.++++.++. ..+.++.+||||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (258)
T PRK14241 75 GPGVDPVAVRRTIGMVFQRPNPFP--TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGG 152 (258)
T ss_pred ccccChHHHhcceEEEccccccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 134899999865443 37999999876543332 122223456667777653 345678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----------hccc
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----------KRHI 247 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----------gr~v 247 (287)
|+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++||+++++.. |++ |+++
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999998 34444544432 34699999999866 432 6788
Q ss_pred cCCChHHHHH
Q 023126 248 STGKPPDVAK 257 (287)
Q Consensus 248 ~~G~~~ev~~ 257 (287)
+.|+++++..
T Consensus 233 ~~~~~~~~~~ 242 (258)
T PRK14241 233 EIDDTEKIFS 242 (258)
T ss_pred ecCCHHHHHh
Confidence 8888877643
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-32 Score=238.98 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=152.6
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.|+.+.++ +++ +.+++||++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQAL-----HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQT 74 (237)
T ss_pred ccEEEEEeEEEeeCCceee-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCH
Confidence 3678999999999877777 888 9999999999999999999999999999999 9999999888542
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHh---ccCCCCCCCCCCcccCCchhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---RNQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|+...++ .+|+.+|+.+..... ......+.+.++++.+ ....+.++.+||+||+||+++|+
T Consensus 75 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFS--RMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HHHHHhCEEEeccCcccCC--CCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence 234899999965443 379999987753221 1111223444555554 23445678899999999999999
Q ss_pred hhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+++.+|+++++|+|+..+|.. +++.+.++.+ ..|++|||++++.. |++ |++++.|+++++.
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999993 4444544432 24689999998776 544 7888899888764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-32 Score=235.22 Aligned_cols=179 Identities=14% Similarity=0.042 Sum_probs=142.3
Q ss_pred cccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 52 FGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 52 ~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++++++++.| +.+.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 l~~~~l~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYLGGRQAL-----QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEecCCCeEE-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 6778999999 556666 888 9999999999999999999999999999999 9999999887532
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~a 196 (287)
...++|++|++..++. +|+.+|+.+.....+.......+++.++++.++. ..++.+.+||+||+||+++|++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMD--RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred HHHHHhheEEEecCcccccc--ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHH
Confidence 2358999999754333 7999999876544433222233456677877763 3467788999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++.+|+++++|||+..||. .+++.+.++.+ ..+++|||++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999999999999998 34555555432 24699999999875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=239.92 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=152.2
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 i~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFGILTVL-----DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeCCeeEE-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 3578899999877666 888 9999999999999999999999999999999 9999998877432
Q ss_pred -------------CceeEEEeCCCCCCCcccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcc
Q 023126 123 -------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHG 186 (287)
Q Consensus 123 -------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG 186 (287)
.+.++|++|++..++ ..|+.+|+.+... ..+.......+++.++++.++. ..+..+.+||+|
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFP--HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCC--CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 235899999865443 3799999987532 2222222233456777877763 345677899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+||+++|++++.+|+++++|+++..||. .+++.++++.+ ..|++|||++.+.. |++ |++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999998 34455555432 24699999999865 444 88888888
Q ss_pred hHHHH
Q 023126 252 PPDVA 256 (287)
Q Consensus 252 ~~ev~ 256 (287)
.+++.
T Consensus 231 ~~~~~ 235 (252)
T TIGR03005 231 PDEIF 235 (252)
T ss_pred HHHHh
Confidence 77764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=242.49 Aligned_cols=199 Identities=15% Similarity=0.155 Sum_probs=155.2
Q ss_pred CCccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.++++++++++.|+ .+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~ 76 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNAL-----KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKE 76 (271)
T ss_pred ceEEEEEeEEEEcCCCCccce-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcC
Confidence 46789999999995 44566 888 9999999999999999999999999999999 9999999887542
Q ss_pred -----CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 -----~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
+..++|++|++. .++ .+|+.+|+.+.....+.......+++.++++.++. ..+..+..||+||+||++||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 77 NLKEIRKKIGIIFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred CHHHHhcceEEEEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHH
Confidence 235899999963 233 27999999876543333222233456777887763 45778889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|++.+|+++++|+++..||. .+++.++++.+ ..|++||+++.+.. +++ |++++.|++.++..
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999 45555555532 34689999998754 333 77777887776543
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-32 Score=243.36 Aligned_cols=197 Identities=17% Similarity=0.138 Sum_probs=154.7
Q ss_pred ccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.|+. ..++ +++ +++++||++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~l~~~~l~~~~~~~~~~l-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 1 ILETRDLKYSYPDGTEAL-----KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred CEEEEEEEEEeCCCCeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccch
Confidence 3678899999963 4466 888 9999999999999999999999999999999 9999999888542
Q ss_pred ----CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 ----~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++. ..++++.+|||||+||+++|+
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAG 150 (275)
T ss_pred HHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHH
Confidence 234899999963 2232 6999999875443332222334567778887773 456788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|+++++|+++..+|. .+++.+.++.+ .++++|||++.+.. |++ |++++.|+++++..
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999 34455555433 24699999999875 444 78888998888653
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=237.51 Aligned_cols=198 Identities=12% Similarity=0.033 Sum_probs=155.3
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~ 122 (287)
.|+++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQAL-----NDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNI 73 (251)
T ss_pred ccEEEEEEeEEEECCeeee-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEec
Confidence 5788999999999877767 888 9999999999999999999999999999987 6 789999887542
Q ss_pred ----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 123 ----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
...++|++|++..+ . +|+.+|+.+.....+... ....+++.++++.++. ..+.++..||+
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 150 (251)
T PRK14270 74 YDKDVDVVELRKRVGMVFQKPNPF-P--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG 150 (251)
T ss_pred ccccccHHHHHhheEEEecCCCcC-C--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence 23489999996533 2 699999987654443311 1223455667776653 24567889999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||+||+++|++++.+++++++|+++..||. .+++.++++.+ ..|++||+++++.. |++ |++++.|++
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~ 230 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKT 230 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCH
Confidence 999999999999999999999999999999 34444554432 34699999998766 444 888889988
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 231 ~~~~~ 235 (251)
T PRK14270 231 EKIFL 235 (251)
T ss_pred HHHhc
Confidence 88643
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-32 Score=267.24 Aligned_cols=202 Identities=17% Similarity=0.161 Sum_probs=160.4
Q ss_pred CCCCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 47 NAQPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
.+.++++++++++.|+. ..++ +++ |++.+|+++||+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 8 ~~~~~l~v~~l~~~y~~~~~~~~~l-----~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~ 79 (623)
T PRK10261 8 DARDVLAVENLNIAFMQEQQKIAAV-----RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKML 79 (623)
T ss_pred CCCceEEEeceEEEecCCCCceeEE-----EeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEE
Confidence 45678999999999963 3456 888 9999999999999999999999999999999 999998876521
Q ss_pred ----------------------CCceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhccC---
Q 023126 122 ----------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--- 175 (287)
Q Consensus 122 ----------------------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--- 175 (287)
....++|++|++.....+.+|+.+|+.+..... +.......+++.++|+.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 159 (623)
T PRK10261 80 LRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ 159 (623)
T ss_pred eccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh
Confidence 013589999996322233489999999876542 333333446778889888852
Q ss_pred --CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HH
Q 023126 176 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RV 242 (287)
Q Consensus 176 --~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv 242 (287)
.+.++.+|||||+||++||+|++.+|++|++||++..||. .+++.++++.+ .+|++|||++++.. |+
T Consensus 160 ~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri 239 (623)
T PRK10261 160 TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRV 239 (623)
T ss_pred hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 4678889999999999999999999999999999999999 45555555542 24799999999876 55
Q ss_pred h----hccccCCChHHHH
Q 023126 243 L----KRHISTGKPPDVA 256 (287)
Q Consensus 243 ~----gr~v~~G~~~ev~ 256 (287)
+ |++++.|++.++.
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 4 8888889887764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=243.84 Aligned_cols=200 Identities=15% Similarity=0.163 Sum_probs=157.0
Q ss_pred CCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---cccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~---G~i~~~~~~~ 122 (287)
+.+++++++++.|+. +.++ +++ +.+.+|+++||+||||||||||+++|+|+++ |++ |+|.++|...
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l-----~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPAL-----NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITL 74 (282)
T ss_pred CceEEEEEEEEEcCCCCccce-----eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEEC
Confidence 457889999999964 3456 888 9999999999999999999999999999999 987 8998887543
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++...+. ..|+.+|+.+.....+.......+++.++++.++. ..+.++..||+||+||++
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~ 153 (282)
T PRK13640 75 TAKTVWDIREKVGIVFQNPDNQFV-GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVA 153 (282)
T ss_pred CcCCHHHHHhheEEEEECHHHhhc-cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHH
Confidence 2358999999632222 37999999876544443322334557778887773 457788899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|++++.+|+++++|+++..||. .+++.+.++.. .++++||+++.+.. |++ |++++.|+++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999 44455555432 24689999999854 443 88899999888754
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=238.47 Aligned_cols=200 Identities=12% Similarity=0.076 Sum_probs=155.7
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~ 120 (287)
..+++++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 8 ~~~~~l~i~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~p~~~~~G~i~~~g~ 79 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQHHAL-----KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ---MVPNVKLTGEMNYNGS 79 (259)
T ss_pred cCCceEEEeeEEEEECCeeeE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---CCCCCCCceEEEECCE
Confidence 567899999999999877777 888 9999999999999999999999999999986 4 6899988875
Q ss_pred CC----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCC
Q 023126 121 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSF 183 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~l 183 (287)
.. ...++|++|++..+ . .|+++|+.+....++... ....+++.++++.++. ..+.++.+|
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~L 156 (259)
T PRK14274 80 NILKGKVDLVELRKNIGMVFQKGNPF-P--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSL 156 (259)
T ss_pred EccccccCHHHHhhceEEEecCCccc-c--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccC
Confidence 42 23489999996543 3 389999987654443221 1123345666776653 235678899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
|+||+||+++|++++.+|+++++|+|+..||. .+++.+.++.. ..|++||+++.+.. |++ |++++.|
T Consensus 157 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 157 SGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999 34444444432 34699999998876 444 8888999
Q ss_pred ChHHHHH
Q 023126 251 KPPDVAK 257 (287)
Q Consensus 251 ~~~ev~~ 257 (287)
+++++..
T Consensus 237 ~~~~~~~ 243 (259)
T PRK14274 237 DTNKMFS 243 (259)
T ss_pred CHHHHhh
Confidence 9888643
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-32 Score=239.83 Aligned_cols=197 Identities=15% Similarity=0.075 Sum_probs=155.3
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CcccccCCCCC--
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~---~G~i~~~~~~~-- 122 (287)
+++++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |+ +|+|.++|...
T Consensus 2 ~~~l~~~nl~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQAL-----HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQR 73 (262)
T ss_pred CcEEEEeeEEEEeCCeEEE-----ecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccc
Confidence 5789999999999887777 898 9999999999999999999999999999998 86 49998888542
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhc--------CCCCCchHHHHHHHHHHhcc--CCCCCCC
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRN--QGSVYAP 181 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--------~~~~~~~~~~~~~~l~~l~~--~~~~~~~ 181 (287)
...++|++|++..++ .+|+.+|+.+..... +.......+++.++++.++. ..++.+.
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 74 EGRLARDIRKSRANTGYIFQQFNLVN--RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS 151 (262)
T ss_pred ccccchhHHHHHhheEEEcccccccc--CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 124899999965433 489999997653210 11112234467788888773 3567888
Q ss_pred CCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hcc
Q 023126 182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRH 246 (287)
Q Consensus 182 ~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~ 246 (287)
+||+||+||+++|++++.+|++|++|+|+..||. .+++.+.++.. ..|++|||++.+.. |++ |++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999998 44455555542 24689999998766 544 788
Q ss_pred ccCCChHHH
Q 023126 247 ISTGKPPDV 255 (287)
Q Consensus 247 v~~G~~~ev 255 (287)
++.|+++++
T Consensus 232 ~~~g~~~~~ 240 (262)
T PRK09984 232 FYDGSSQQF 240 (262)
T ss_pred EEeCCHHHh
Confidence 888988774
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-32 Score=232.20 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=152.6
Q ss_pred cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCccc
Q 023126 62 KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 140 (287)
Q Consensus 62 ~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ 140 (287)
....++ +++ |++++||.+||+|+||||||||+|+|+|.++ |++|+|.+.|... ..+... .-++++
T Consensus 38 ~~~~aL-----~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~----~li~lg--~Gf~pe 103 (249)
T COG1134 38 AEFWAL-----KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVA----PLIELG--AGFDPE 103 (249)
T ss_pred ceEEEe-----cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEe----hhhhcc--cCCCcc
Confidence 344555 777 9999999999999999999999999999999 9999999887532 122222 123446
Q ss_pred CCccccHHHHHHhcCCCCCchHHHHHHHHH--HhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhH
Q 023126 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLK--NLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 218 (287)
Q Consensus 141 ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~--~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~ 218 (287)
+|.+||+.+.....|+...+..+++.++.+ .+++..+.++++||-||+-|++++.++..+|++|++|+.+...|+.+.
T Consensus 104 lTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~ 183 (249)
T COG1134 104 LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ 183 (249)
T ss_pred cchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHH
Confidence 999999999999998887777777776654 566889999999999999999999999999999999999999999555
Q ss_pred HHH----HHhh---cCceEEEeCHHHHHH---HHh----hccccCCChHHHHHHHHHh
Q 023126 219 KDV----SSMF---DEKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEY 262 (287)
Q Consensus 219 ~~l----~~~~---~~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~~~~ 262 (287)
+.- .++. ...|+||||++.+.+ |++ |++...|.+++++..|...
T Consensus 184 ~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 184 EKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 433 3331 234699999999988 555 8999999999999887653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=238.72 Aligned_cols=199 Identities=11% Similarity=0.038 Sum_probs=155.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~ 120 (287)
..++.++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 15 ~~~~~l~~~nl~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~ 86 (267)
T PRK14235 15 ATEIKMRARDVSVFYGEKQAL-----FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGE 86 (267)
T ss_pred CCCceEEEEeEEEEECCEEEE-----EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCE
Confidence 456789999999999987777 888 9999999999999999999999999999997 5 8999998874
Q ss_pred CC----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhccC------CCCCCCC
Q 023126 121 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ------GSVYAPS 182 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~~------~~~~~~~ 182 (287)
.. +..++|++|++..+ . .|+.+|+.+.....+. ......+++.++++.++.. .+.++.+
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 163 (267)
T PRK14235 87 DIYDPRLDVVELRARVGMVFQKPNPF-P--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTG 163 (267)
T ss_pred ECcccccchHHHhhceEEEecCCCCC-C--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCccc
Confidence 32 23489999986533 2 4899999876543332 1122234567777777642 3567889
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccC
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|||||+||+++|++++.+|++|++|+|+..||.. +.+.+.++.. .+|++|||++.+.. +++ |++++.
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999993 4444444432 34699999999866 444 788888
Q ss_pred CChHHHH
Q 023126 250 GKPPDVA 256 (287)
Q Consensus 250 G~~~ev~ 256 (287)
|+++++.
T Consensus 244 g~~~~~~ 250 (267)
T PRK14235 244 GDTEKMF 250 (267)
T ss_pred CCHHHHH
Confidence 8877764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-32 Score=240.68 Aligned_cols=197 Identities=16% Similarity=0.116 Sum_probs=154.4
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~l~i~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLL-----HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK 81 (265)
T ss_pred ceEEEeeEEEEECCEEEE-----eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence 478999999999877777 888 9999999999999999999999999999999 9999999988542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhc-C---CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
...++|++|+...++ .+|+.+|+.+..... + .......+++.++++.++. ..+.++.+|||||+||+++|
T Consensus 82 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 82 AFARKVAYLPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHhhheEEeccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 235899999854333 379999987642211 1 1111234456777877763 45678889999999999999
Q ss_pred hhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++++.+|+++++|+|+..||.. +++.+.++.. ..|++||+++++.. |++ |++++.|+++++.
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 9999999999999999999993 4555555532 24699999998875 444 7888888877754
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=248.61 Aligned_cols=187 Identities=15% Similarity=0.085 Sum_probs=149.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
+++ ++++.|+... + ++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 l~~-~l~k~~~~~~-~------~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLGDLC-L------TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeCCEE-E------EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 455 7888898632 2 46 9999999999999999999999999999999 9999998877431
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.++|++|+...++ .+|+.+|+.+.... ...+++.++++.++. ..++++.+|||||+||++||++
T Consensus 71 ~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalara 142 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFP--HYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRA 142 (352)
T ss_pred cchhhCCEEEEcCCcccCC--CCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 245899999965443 48999999875321 234567788888873 3577888999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|||+..||. .+++.++++.. ..|++|||++++.. |++ |++++.|++++++.
T Consensus 143 L~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 143 LLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999998 34455555433 24799999998876 544 88889999988764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=231.06 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=141.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFGDFHVL-----KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEECCeEee-----cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHH
Confidence 3567899999877767 888 9999999999999999999999999999999 9999999887532
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++..++ .+|+.+|+.+... ..+.......+++.++++.++. ..+.++.+||+||+||+++|+++
T Consensus 73 ~~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 73 ELRQKVGMVFQQFNLFP--HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HHHhcceEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 235899999975443 3799999987543 2222222233456777877763 34678889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.+|+++++|+|+..||. .+++.+.++.+ ..|++||+++.+..
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999999999998 34455555433 24689999998754
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=229.51 Aligned_cols=175 Identities=11% Similarity=0.002 Sum_probs=139.9
Q ss_pred cCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----------
Q 023126 54 KTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------- 122 (287)
Q Consensus 54 ~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---------- 122 (287)
++++++.|+++.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 i~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFGDKIIL-----DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEECCEEEE-----eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHH
Confidence 46788889877777 888 9999999999999999999999999999999 9999999887641
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++ ...+.++.+||+||+||+++|++++
T Consensus 73 ~~~~~i~~~~q~~~~~~--~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 73 FRREKLGYLFQNFALIE--NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred HHHhCeeEEecchhhcc--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 235899999965433 3799999988654433333334556778888877 3456788899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.+|+++++|+|+..||. .+++.++++.. ..|++||+++..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999999998 34455554432 246899999864
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-32 Score=243.04 Aligned_cols=198 Identities=12% Similarity=0.039 Sum_probs=152.6
Q ss_pred CccccCcccccccccc-----hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSL-----KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
..++++++++.|+.+. ++ +++ +++++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~ 76 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKAL-----NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIP 76 (289)
T ss_pred ceEEEEEEEEEeCCCCcccccee-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcc
Confidence 4578899999997642 55 888 9999999999999999999999999999999 9999998877431
Q ss_pred ------------CceeEEEeCCCCC-CCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcc
Q 023126 123 ------------PDVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHG 186 (287)
Q Consensus 123 ------------~~~i~~v~qd~~~-~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG 186 (287)
...++|++|++.. ++. .|+.+|+.+.....+.......+++.++++.++. ..++++.+||+|
T Consensus 77 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~G 154 (289)
T PRK13645 77 ANLKKIKEVKRLRKEIGLVFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGG 154 (289)
T ss_pred ccccccccHHHHhccEEEEEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHH
Confidence 2358999999632 232 5899999876543332222223456667777664 346778899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+||+++|+|++.+|++|++|||+..||. .+++.+.++.. .+|++||+++++.. +++ |++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999 34444555432 24699999998766 444 78888888
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 877643
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=231.09 Aligned_cols=178 Identities=16% Similarity=0.036 Sum_probs=140.3
Q ss_pred ccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 53 GKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
+++++++.|+. +.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~~l~~~~~~~~~~l-----~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 2 EFINVTKTYPNGTAAL-----DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred EEEEEEEEeCCCceee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 56788888864 4566 888 9999999999999999999999999999999 9999998887532
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+.++.+||+||+||+++|+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLP--DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHHheEEEecCchhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 134899999965443 37999999886544433222234466778887763 34667889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.+|+++++|||+..||. .+++.++++.+ ..|++||+++.+..
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999999999998 34455555432 24699999998764
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=234.39 Aligned_cols=194 Identities=16% Similarity=0.104 Sum_probs=150.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.. . .++ +++.+|+++||+||||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 2 l~~~~l~~~~~~~--~-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYHHL--P-----MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEECCc--c-----ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 5788999999742 2 256 9999999999999999999999999999999 9999999888642 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..+. .+|+.+|+.+.............+++.++++.++ ...++++.+||+||+||+++|++++.+|+
T Consensus 72 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFS--HLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEeccccccc--CCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965443 3799999876432110111223456777888877 34577888999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++++|+|+..||. .+++.+.++.. ..|++|||++++.. +++ |++++.|+++++..
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999 34455555532 24699999998765 444 78888888777653
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=236.83 Aligned_cols=200 Identities=16% Similarity=0.130 Sum_probs=153.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC-----C-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----P- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~-----~- 122 (287)
++++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.. .
T Consensus 2 ~~l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGC-----RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELY 73 (253)
T ss_pred ceEEEeeeEEEeCCceEe-----ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEecccccccccc
Confidence 578899999999876666 888 9999999999999999999999999999999 999999987753 1
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhcc---CCCCCCCCCCccc
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGV 187 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~ 187 (287)
.+.++|++|++.......+++.+|+.+....... ......+.+.++++.++. ..+..+..|||||
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHH
Confidence 1248999999643233336777887654322221 111234566778888874 3456788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
+||+++|++++.+|+++++||++..||. .+++.+.+..+ ..|++||+++.+.. +++ |++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999998 34444554432 24699999999875 443 788888887
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 234 ~~~~~ 238 (253)
T TIGR02323 234 DQVLD 238 (253)
T ss_pred HHHhc
Confidence 77643
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=237.92 Aligned_cols=202 Identities=10% Similarity=0.009 Sum_probs=154.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC--
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP-- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~-- 122 (287)
.+.+++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++. ..|++|+|.++|...
T Consensus 10 ~~~~l~~~~l~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHAL-----KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CCceEEEEEEEEEeCCeEEe-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 45678999999999877666 888 99999999999999999999999999999840 013799998887432
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
.+.++|++|++..+ . .|+.+|+.+....+ +.......+++.++++.++. ..+.++.+||+||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPF-P--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred cccchHHHhcceEEEecCCccC-c--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHH
Confidence 23589999996533 2 69999998765433 22222223456777777763 2466788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..||.. +.+.++++.. ..|++||+++.+.. |++ |++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999993 4444444432 24699999998765 544 78888888877
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 242 ~~~ 244 (260)
T PRK10744 242 IFT 244 (260)
T ss_pred HHh
Confidence 643
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=241.49 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=151.6
Q ss_pred cccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 52 FGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++.|+.. .++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~ 74 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRAL-----FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITST 74 (280)
T ss_pred EEEEEEEEEcCCCCcccccee-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccc
Confidence 5678899999742 355 888 9999999999999999999999999999999 9999999887532
Q ss_pred ---------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCC
Q 023126 123 ---------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ---------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~q 189 (287)
+..++|++|++. .++. .|+.+|+.+....++.......+++.++++.++.. .++++.+|||||+|
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 75 SKNKDIKQIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMR 152 (280)
T ss_pred ccccCHHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 134899999863 2333 59999998765444332222334566777777643 46778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
|+++|++++.+|++|++|+|+..||. .+++.|.++.+ .+|++||+++.+.. +++ |++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999 34444444432 24689999998865 444 788888888876
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
..
T Consensus 233 ~~ 234 (280)
T PRK13649 233 FQ 234 (280)
T ss_pred hc
Confidence 54
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=235.18 Aligned_cols=198 Identities=16% Similarity=0.104 Sum_probs=153.3
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCC---CCcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p---~~G~i~~~~~~~ 122 (287)
.++++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|++ . | ++|+|.++|...
T Consensus 3 ~~~l~~~~l~~~~~~~~~l-----~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 3 EPILQVSDLSVYYNKKKAL-----NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNI 74 (252)
T ss_pred CceEEEEeeEEEECCeeee-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEEC
Confidence 4678999999999877777 888 999999999999999999999999999984 4 6 589999887532
Q ss_pred ----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 123 ----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
...++|++|++..+ + .|+.+|+.+.....+.... ...+++.++++.++. ..+..+.+||+
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (252)
T PRK14239 75 YSPRTDTVDLRKEIGMVFQQPNPF-P--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG 151 (252)
T ss_pred cCcccchHhhhhcEEEEecCCccC-c--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCH
Confidence 23599999996533 3 6999999876544333221 123455666766652 24677889999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||+||+++|++++.+|+++++|+|+..||.. +++.+.++.. .+|++|||++++.. |++ |++++.|++
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999993 3444444432 34699999998766 544 888889988
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
.++..
T Consensus 232 ~~~~~ 236 (252)
T PRK14239 232 KQMFM 236 (252)
T ss_pred HHHHh
Confidence 88643
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-32 Score=240.57 Aligned_cols=200 Identities=15% Similarity=0.161 Sum_probs=156.2
Q ss_pred CCccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.++++++++++.|+.. .++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l-----~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~ 76 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTL-----KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDD 76 (269)
T ss_pred CceEEEEEEEEEcCCCCCcce-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcC
Confidence 5678999999999753 355 888 9999999999999999999999999999999 9999999988543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++...+. ..++.+|+.+.....+.......+++.++++.++. ..+.++.+||+||+||+++|+
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 77 NFEKLRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred CHHHHHhheeEEEeChHHhcc-cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence 2348999999642222 25788888776544333222234456677877773 456778899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
|++.+|+++++|+++..||. .+++.++++.+ ..|++||+++++.. |++ |++++.|+++++..
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999 44555555532 24699999998865 444 78888888887654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-32 Score=261.96 Aligned_cols=197 Identities=16% Similarity=0.105 Sum_probs=155.5
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.|+++.++ +++ +++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~i~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 2 QALLQLKGIDKAFPGVKAL-----SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGP 73 (501)
T ss_pred CceEEEeeeEEEeCCeEEe-----eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCH
Confidence 3679999999999887777 888 9999999999999999999999999999999 9999999887432
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhc---C-CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---G-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~---~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..++ .+|+.+|+.+....+ + .......+++.++++.++. ..++++.+||||||||++
T Consensus 74 ~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 151 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIP--QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVE 151 (501)
T ss_pred HHHHhCCEEEEEcchhccC--CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH
Confidence 235899999864333 489999998753321 1 1111223456778888773 446788899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
||+|++.+|++|++|||+..||. .+++.+.++.+ ..|++|||++++.. |++ |++++.|+++++
T Consensus 152 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 152 IAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999999 34444455433 24699999999876 544 788888877665
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=237.54 Aligned_cols=196 Identities=17% Similarity=0.152 Sum_probs=152.8
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 l~~~~l~~~~~~~~il-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIV-----DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEECCEEEE-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHH
Confidence 4678899999887777 888 9999999999999999999999999999999 9999999988542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHH-h---cCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhh
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~---~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~a 196 (287)
...++|++|++...+ .+|+.+|+.+... . +........+++.++++.++. ..+.++..||+||+||+++|++
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 74 ARRVALVEQDSDTAV--PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred hhheEEecccCccCC--CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 234899999864333 3799999877421 1 111222234467778887763 4567888999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|+++..||.. +.+.+.++.+ ..|++|||++.+.. |++ |++++.|+.+++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999993 4444444432 24699999999866 544 78888898877643
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=233.04 Aligned_cols=196 Identities=13% Similarity=0.093 Sum_probs=153.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
+.++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 1 l~~~~l~~~~~~~~il-----~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYGGFVAL-----DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeCCeeee-----ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhc
Confidence 3567889999877667 898 9999999999999999999999999999999 9999998887532 24
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..+. .+|+.+|+.+.....+.......+++.++++.++. ..+..+..||+||+||+++|++++.+|+
T Consensus 73 ~i~~~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 73 PVNTVFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred ceEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999976443 37999998776544432222233456677777763 4567788999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++++|+++..+|. .+++.+.++.. .++++||+++++.. |++ |++++.|+..++..
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999 44445555432 34689999999765 444 78888888776654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=240.14 Aligned_cols=198 Identities=14% Similarity=0.128 Sum_probs=154.9
Q ss_pred CccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 50 PVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++++.|+.. .++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l-----~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~ 74 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQL-----NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAE 74 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeee-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcC
Confidence 478899999999742 355 888 9999999999999999999999999999999 9999999887543
Q ss_pred -----CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 -----~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
...++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++ ...+.++..|||||+||++||
T Consensus 75 ~~~~~~~~i~~v~q~~~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 75 NVWNLRRKIGMVFQNPDNQFVG--ATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred CHHHHhcceEEEEECHHHhhcc--CCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 234899999963 2332 699999987644333322222345667777766 345677889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
++++.+|+++++|+++..||. .+++.+.++.. ..|++||+++++.. +++ |++++.|+++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999 34455554433 24699999999865 443 88888998888754
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=237.74 Aligned_cols=196 Identities=17% Similarity=0.186 Sum_probs=153.3
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+++.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~l~~~~l~~~~~~~~il-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGYGTKRIL-----NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEECCEEEE-----eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHH
Confidence 47789999999987777 888 9999999999999999999999999999999 9999999887542
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHH----hcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~----~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|+..... .+|+.+|+.+... .++.......+++.++++.++. ..+.++.+|||||+||+++|+
T Consensus 74 ~~~~i~~~~q~~~~~~--~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 74 LARRLALLPQHHLTPE--GITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred HhhheEEecccCCCCC--CccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 234899999965433 4789999876421 1121122234456777777763 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|++.+|+++++|+|+..+|.. +++.+.++.. ..|++||+++.+.+ +++ |+++..|+++++.
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999993 4444444432 24699999998876 444 7888888877764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=233.61 Aligned_cols=198 Identities=14% Similarity=0.081 Sum_probs=152.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+..+ +++ +++++|++++|+|+||||||||+++|+|+++...|++|+|.++|.+.
T Consensus 2 ~~~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYGKKQAL-----FDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEECCEeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 46788999999877777 888 99999999999999999999999999999730016899999888543
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC--CCchHHHHHHHHHHhccC------CCCCCCCCCcccCCchhh
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~~qrv~i 193 (287)
...++|++|++..+ . .|+++|+.+.....+.. .....+++.+.++.++.. .+..+..||+||+||+++
T Consensus 77 ~~~~i~~~~q~~~l~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVF-V--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCccc-c--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 23489999996543 3 59999998764433321 122334566777777642 356778999999999999
Q ss_pred hhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|++++.+|+++++|+++..+|.. +.+.+.++.. ..+++||+++.+.. +++ |++++.|+++++.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999993 3444444322 24689999998865 444 8888888888764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-32 Score=260.46 Aligned_cols=197 Identities=16% Similarity=0.113 Sum_probs=156.5
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p--~~G~i~~~~~~~--- 122 (287)
.++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ | ++|+|.++|...
T Consensus 3 ~~~l~~~nl~~~~~~~~il-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~ 74 (506)
T PRK13549 3 EYLLEMKNITKTFGGVKAL-----DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQAS 74 (506)
T ss_pred CceEEEeeeEEEeCCeEee-----cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCC
Confidence 4689999999999987777 998 9999999999999999999999999999998 7 799999887532
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhc--CC-CCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCch
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--~~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv 191 (287)
+..++|++|++..++ .+|+.+|+.+....+ +. ......+++.++++.++. ..++++.+||||||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv 152 (506)
T PRK13549 75 NIRDTERAGIAIIHQELALVK--ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV 152 (506)
T ss_pred CHHHHHHCCeEEEEeccccCC--CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 234899999965333 489999998754322 11 111223467788888874 45678889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
++|++++.+|++|++|||+..||+ .+++.+.++.+ ..|++|||++.+.. |++ |+++..|+++++
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999 44455555432 24699999999876 544 788888887765
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=231.82 Aligned_cols=189 Identities=20% Similarity=0.097 Sum_probs=150.0
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----Ccee
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVA 126 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----~~~i 126 (287)
++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+++ |++|+|.+++... ...+
T Consensus 1 l~l~~v~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFGKQTAV-----NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEECCEEEE-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccE
Confidence 3567889999877777 888 9999999999999999999999999999999 9999999887542 2358
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|++..++ .+|+.+|+.+....++. ...++.++++.++. ..+..+.+||+||+||+++|++++.+|+++
T Consensus 73 ~~~~q~~~~~~--~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 73 GSLIESPPLYE--NLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred EEEcCCCCccc--cCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999865433 37999999776543332 23466777777763 346678899999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
++|+|+..+|. .+++.+.++.+ ..|++|||++++.. |++ |++++.|++.+
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999 34455555433 24689999998865 544 78888787654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=234.56 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=152.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p----~~G~i~~~~~~~--- 122 (287)
.++++++++.| .+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~-~~~il-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~ 74 (254)
T PRK10418 4 QIELRNIALQA-AQPLV-----HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPC 74 (254)
T ss_pred EEEEeCeEEEe-cccee-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeecccc
Confidence 57889999999 45556 888 9999999999999999999999999999998 8 999999887542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC-----CCCCCCCCCcccCCchhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~~qrv~ia 194 (287)
.+.++|++|++...+.+.+++.+++.+.....+.. ...+++.+.++.++.. .+..+.+||+||+||++||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 75 ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred ccccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence 24599999997433333467777776543333322 2335677888888743 3677889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++++.+|++|++|+++..||. .+++.++++.+ .++++||+++.+.. |++ |++++.|+++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999998 34555555533 24699999999865 443 7888888887764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=233.81 Aligned_cols=201 Identities=10% Similarity=0.078 Sum_probs=152.6
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~---- 122 (287)
-.++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++. ..|++|+|.++|...
T Consensus 3 ~~l~~~nl~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAV-----KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred cEEEEEEEEEEeCCeeEE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 357889999999877777 888 99999999999999999999999999999740 002689998887432
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhcc------CCCCCCCCCCcccCC
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~~q 189 (287)
...++|++|+...++ .+|+.+|+.+.....+.. .....+++.+.++.++. ..+..+.+||+||+|
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred CChHHhhccEEEEecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 234899999966443 379999998654433322 12223456677777663 234677899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|+++|++++.+|+++++|+++..+|. .+++.++++.+ .+|++||+++++.. |++ |++++.|+++++.
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999998 33444444433 34799999999876 544 7888889888764
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 236 ~ 236 (252)
T PRK14256 236 T 236 (252)
T ss_pred h
Confidence 3
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=239.00 Aligned_cols=198 Identities=12% Similarity=0.139 Sum_probs=155.2
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
.++.++++++.|+++.++ +++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 6 ~~l~i~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVA-----ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEECCEEEe-----eecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHH
Confidence 467889999999987777 888 9999999999999999999999999999999 9999999887542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CC---CCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~---~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
...++|++|++..++ .+++.+|+.+..... +. ......+++.++++.++ ...++++..||+||+||+++|
T Consensus 78 ~~~~~i~~v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 78 EVARRIGLLAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHhhheEEeeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 234899999975444 378989887642111 10 11122345677777776 345778889999999999999
Q ss_pred hhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+|++.+|+++++|+|+..||.. +++.+.++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999983 5555555532 24699999998876 444 78888898887654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=246.44 Aligned_cols=188 Identities=12% Similarity=0.089 Sum_probs=148.1
Q ss_pred cccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------------
Q 023126 56 RSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------ 122 (287)
Q Consensus 56 ~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------------ 122 (287)
++++.|+... + ++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~l~~~~~~~~-~------~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLGDFS-L------DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEECCEE-E------EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchh
Confidence 5778887642 2 45 9999999999999999999999999999999 9999998877432
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
++.++|++|++..++ .+|+.+|+.+..... ......+++.++++.++. ..++++.+||||||||+++|+|++.+
T Consensus 74 ~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 74 KRRIGYVFQEARLFP--HLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred hCCeEEEecCCccCC--CCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 245899999965443 489999998765432 112234457788888774 45778889999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|+++++|||+..||. .+++.++++.. ..|++|||++++.. +++ |++++.|+++++..
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999998 44555555543 24699999999876 444 78888898888653
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=229.51 Aligned_cols=177 Identities=13% Similarity=0.080 Sum_probs=137.0
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.+. .++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~l~~~~~~~~-------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGEQP-------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeCCEe-------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHc
Confidence 35678888887542 155 9999999999999999999999999999999 9999999887542 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ .+|+.+|+.+.............+++.++++.++. ..+.++.+||+||+||+++|++++.+|+
T Consensus 71 ~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ 148 (211)
T cd03298 71 PVSMLFQENNLFA--HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP 148 (211)
T ss_pred cEEEEecccccCC--CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 5899999976443 37999998764321111112234567778888773 3467788999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++++|||+..+|. .+++.++++.. ..|++|||++++..
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 9999999999999 34455555432 24699999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=239.17 Aligned_cols=202 Identities=12% Similarity=0.042 Sum_probs=151.3
Q ss_pred CCCCccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
..+..++++++++.|+ .+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~il-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~ 73 (272)
T PRK15056 2 MQQAGIVVNDVTVTWRNGHTAL-----RDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQ 73 (272)
T ss_pred chhceEEEEeEEEEecCCcEEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHH
Confidence 3456789999999995 46666 888 9999999999999999999999999999999 9999999888542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHh----cCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~----~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~i 193 (287)
...++|++|++........++.+++.+.... ...+.....+++.++++.++. ..+.++.+|||||+||+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~l 153 (272)
T PRK15056 74 ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFL 153 (272)
T ss_pred hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHH
Confidence 2358999998643222123566666532110 111112234456677777763 4577888999999999999
Q ss_pred hhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh---hccccCCChHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 256 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~---gr~v~~G~~~ev~ 256 (287)
|++++.+|+++++|+|+..||.. +.+.+.++.+ .+|++|||++.+.. +++ |+++..|+++++.
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence 99999999999999999999993 4444444432 24699999998876 443 7888888887753
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=237.69 Aligned_cols=201 Identities=10% Similarity=0.044 Sum_probs=156.1
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~- 122 (287)
.+.++++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++.. .|++|+|.++|...
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il-----~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQAL-----DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CCCceEEEEEEEEEECCEeeE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 567789999999999887777 898 999999999999999999999999999998510 04899998877432
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
...++|++|++.. +. .++.+|+.+.....+.+. ...+++.++++.++. ..+.++.+|||||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred ccccchHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 2358999999653 33 389999987654443322 234456777777763 2467788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HH-h----hccccCCChH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV-L----KRHISTGKPP 253 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv-~----gr~v~~G~~~ 253 (287)
+||++||++++.+|++|++|+++..||. .+++.|+++.+ ..|++|||++++.. |+ + |++++.|++.
T Consensus 186 ~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 186 QQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 9999999999999999999999999998 34445555433 34699999999876 53 1 7888888877
Q ss_pred HHH
Q 023126 254 DVA 256 (287)
Q Consensus 254 ev~ 256 (287)
++.
T Consensus 266 ~~~ 268 (285)
T PRK14254 266 KIF 268 (285)
T ss_pred HHH
Confidence 764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=236.04 Aligned_cols=201 Identities=14% Similarity=0.084 Sum_probs=155.0
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC--
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP-- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~-- 122 (287)
..++++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+++.. .|++|+|.++|...
T Consensus 17 ~~~~l~~~nl~~~~~~~~il-----~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAI-----KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91 (267)
T ss_pred CCeEEEEeeEEEEECCeeeE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc
Confidence 45689999999999887777 888 999999999999999999999999999998500 03799998887542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
...++|++|++..+ . .|+.+|+.+.....+... ....+++.+.++.++. ..+.++.+||+||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 92 KEINVYEMRKHIGMVFQRPNPF-A--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQ 168 (267)
T ss_pred ccCChHHHhcceEEEecCCccc-c--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHH
Confidence 23489999986543 2 599999987654333211 1223445666776653 2467788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..||. .+.+.+.++.. ..|++||+++++.. |++ |++++.|++.+
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998 34455555432 24699999998765 444 88889998887
Q ss_pred HH
Q 023126 255 VA 256 (287)
Q Consensus 255 v~ 256 (287)
+.
T Consensus 249 ~~ 250 (267)
T PRK14237 249 IF 250 (267)
T ss_pred Hh
Confidence 64
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=232.10 Aligned_cols=194 Identities=16% Similarity=0.162 Sum_probs=151.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.. ++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 1 l~~~~l~~~~~~~-~l-----~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWKEF-KL-----KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeCCc-ee-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHc
Confidence 3567888888754 45 888 9999999999999999999999999999999 9999999887542 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++. ..+.++.+||+||+||+++|++++.+|+
T Consensus 72 ~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 72 DISYVPQNYALFP--HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred CEEEEeecCccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 5899999965443 37999999876544333222233456677877773 3567788999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++++|+++..+|. .+++.++++.. ..+++||+++++.. +++ |++++.|+++++.
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999998 45555555432 24689999999775 444 7888888876654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=233.23 Aligned_cols=197 Identities=13% Similarity=0.046 Sum_probs=153.0
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH---hcccCC--CCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR---INKIWP--QKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~---l~~~~p--~~G~i~~~~~~~- 122 (287)
++++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+ ++ | ++|+|.++|...
T Consensus 2 ~~l~~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 2 VKIDARDVNFWYGDFHAL-----KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIY 73 (250)
T ss_pred cEEEEEEEEEEECCEeEE-----eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEecc
Confidence 678899999999887777 888 99999999999999999999999999997 34 4 489998887542
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++..+ . .|+.+|+.+.....+... ....+.+.++++.++. ..+.++.+||||
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPF-P--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGG 150 (250)
T ss_pred cccccHHHHhhheEEEecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHH
Confidence 12489999996543 2 489999987654433221 1223456677777763 235677899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++|||+..||.. +++.++++.. .+|++|||++.+.. |++ |++++.|+++
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999993 4444444432 34699999999866 554 8888999888
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 231 ~~~~ 234 (250)
T PRK14245 231 KIFT 234 (250)
T ss_pred HHhc
Confidence 8754
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=234.84 Aligned_cols=203 Identities=12% Similarity=0.106 Sum_probs=153.8
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~- 122 (287)
...++++++++++.|+++.++ +++ +.+++|+++||+|+||||||||+++|+|+++.. .|++|+|.++|...
T Consensus 17 ~~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 17 AKEHILEVKDLSIYYGEKRAV-----NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCCceEEEEEEEEEeCCceee-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 566789999999999887777 888 999999999999999999999999999985200 15899998877432
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++..+ . .|+.+|+.+.....+... ....+.+.+.++.++. ..+.++.+||||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 168 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPF-P--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGG 168 (268)
T ss_pred cccccHHHHhccEEEEecCCccC-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHH
Confidence 23589999996533 3 489999987643332211 1122345566666553 235678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++|+++..||. .+++.++++.. .+|++|||++++.. |++ |++++.|+++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999998 34445555432 34699999998766 554 7888888887
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 249 ~~~~ 252 (268)
T PRK14248 249 QIFT 252 (268)
T ss_pred HHHh
Confidence 7643
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=233.47 Aligned_cols=191 Identities=15% Similarity=0.101 Sum_probs=150.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
.++++++++.|+.+.++ +++ +.+.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSSFGKEIL-----KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEeCCeeee-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChHH
Confidence 36788999999877777 888 9999999999999999999999999999999 9999999887532
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
+..++|++|++..+ . .++.+|+.+.....+ ....++.++++.++.. .++++.+|||||+||+++|++++
T Consensus 75 ~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~ 147 (241)
T PRK14250 75 LRRKIGMVFQQPHLF-E--GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA 147 (241)
T ss_pred hhhcEEEEecCchhc-h--hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 24589999996543 2 589898876433221 2234567777777642 46778899999999999999999
Q ss_pred cCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 199 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
.+|+++++|+++..||.. +.+.++++.+ ..|++|||++.+.. |++ |++++.|++.++.
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 148 NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999999983 4444444432 24699999999765 444 7888888888764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=259.04 Aligned_cols=198 Identities=16% Similarity=0.104 Sum_probs=156.4
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.|+++.++ +++ +.+++|+++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 3 ~~~l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 3 TPYISMAGIGKSFGPVHAL-----KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDH 74 (510)
T ss_pred CceEEEeeeEEEcCCeEEe-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCH
Confidence 4689999999999987777 898 9999999999999999999999999999999 9999999887542
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHh----cCCC---CCchHHHHHHHHHHhcc--CCCCCCCCCCcccCC
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAP---WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~----~~~~---~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~q 189 (287)
...++|++|++..++ .+|+.+|+.+.... ++.. .....+++.++++.++. ..++++.+|||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q 152 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQ 152 (510)
T ss_pred HHHHHCCeEEEeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHH
Confidence 134899999865433 47999998764321 1211 11223567778888873 456788899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
|++||++++.+|++|++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |+++..|.++++
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999999999999999999999 34444555433 24699999999876 554 788888887765
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 233 ~ 233 (510)
T PRK09700 233 S 233 (510)
T ss_pred C
Confidence 3
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=257.29 Aligned_cols=200 Identities=17% Similarity=0.172 Sum_probs=156.0
Q ss_pred CCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccC
Q 023126 49 QPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDS 118 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~ 118 (287)
.++++++++++.|+. +.++ +++ +.+++||++||+||||||||||+++|+|+++ | ++|+|.++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l-----~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~ 74 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVV-----NDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFH 74 (529)
T ss_pred CceEEEeceEEEecCCCCceeee-----eceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEEC
Confidence 468999999999963 3566 888 9999999999999999999999999999998 7 79999888
Q ss_pred CCCC------------CceeEEEeCCCCCCCcccCCccccHHHHHHh-cCCCCCchHHHHHHHHHHhccC-----CCCCC
Q 023126 119 QVKP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYA 180 (287)
Q Consensus 119 ~~~~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~~~ 180 (287)
|... ...++|++|++.....+.+++.+++.+.... .+.+.....+++.++++.++.. .++++
T Consensus 75 g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 75 GESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred CEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 7532 1358999999643223346888887754322 2333333456778888888753 36788
Q ss_pred CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hc
Q 023126 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 245 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr 245 (287)
.+|||||+||++||+|++.+|++|++|||+..||. .+++.++++.. .+|++|||++.+.. |++ |+
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~ 234 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCE
Confidence 89999999999999999999999999999999999 44455555432 24699999999876 554 78
Q ss_pred cccCCChHHHH
Q 023126 246 HISTGKPPDVA 256 (287)
Q Consensus 246 ~v~~G~~~ev~ 256 (287)
+++.|+++++.
T Consensus 235 i~~~g~~~~~~ 245 (529)
T PRK15134 235 CVEQNRAATLF 245 (529)
T ss_pred EEEeCCHHHHh
Confidence 88888887764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=235.58 Aligned_cols=202 Identities=12% Similarity=0.084 Sum_probs=154.4
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~- 122 (287)
+..++++++++++.|+.+.++ +++ +.|++|++++|+|+||||||||+++|+|+++.. +|++|+|.++|.+.
T Consensus 9 ~~~~~l~i~nl~~~~~~~~il-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 9 SKNIIISLQNVTISYGTFEAV-----KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CCCceEEEEeEEEEECCEEEE-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 456789999999999987777 888 999999999999999999999999999998610 13899999887532
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
...++|++|++.. +. .|+.+|+.+.....+.. ....+++.++++.++. ..+.++.+||+||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 159 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQ 159 (269)
T ss_pred cccCCHHHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHH
Confidence 1358999999653 33 49999998765433322 1223445566666652 2467788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh---------------
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL--------------- 243 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~--------------- 243 (287)
+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++|||++++.. |++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999998 34445544432 34699999998876 332
Q ss_pred hccccCCChHHHHH
Q 023126 244 KRHISTGKPPDVAK 257 (287)
Q Consensus 244 gr~v~~G~~~ev~~ 257 (287)
|++++.|++.++..
T Consensus 240 g~~~~~~~~~~~~~ 253 (269)
T PRK14259 240 GYLVEFNETKKIFN 253 (269)
T ss_pred ceEEEeCCHHHHHh
Confidence 34678888888765
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=232.64 Aligned_cols=197 Identities=10% Similarity=0.080 Sum_probs=150.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~~~-- 122 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |+ +|+|.++|...
T Consensus 4 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAV-----KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEECCEEee-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEccc
Confidence 67889999999877777 888 9999999999999999999999999999997 74 79998887432
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhc------cCCCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLR------NQGSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~------~~~~~~~~~lSgG~ 187 (287)
...++|++|++..++ .+|+.+|+.+.....+.... ...+.+.+.++.++ ...+.++..|||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153 (252)
T ss_pred CccCHHHhhceeEEEeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence 235899999965443 37999999865443322111 12233444444443 23467788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..+|. .+.+.++++.. ..|++||+++.+.. |++ |++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998 34444444432 24699999999876 444 88888898888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 234 ~~~ 236 (252)
T PRK14272 234 LFT 236 (252)
T ss_pred HHh
Confidence 643
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=232.46 Aligned_cols=196 Identities=17% Similarity=0.174 Sum_probs=154.0
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.+.++ +++ +++.+|+++||+|+||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 1 i~i~~l~~~~~~~~il-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFGSFQAL-----DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEECCeeee-----eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhc
Confidence 3578889999877777 888 9999999999999999999999999999999 9999998877542 24
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ .+|+.+|+.+....++.......+.+.++++.++. ..+..+..||+||+||++++++++.+|+
T Consensus 73 ~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 73 KIGFVFQHYALFK--HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred CEEEEecChhhcc--CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999875443 37999999876544332222234556777877763 3467778999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++++|+++..+|. .+++.+.++.. ..+++||+++++.. +++ |++++.|+.+++..
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999998 34455554432 34689999998766 544 78888888777643
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=226.21 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=142.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 1 MLEARNLACERDERILF-----SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred CeEEEEEEEEECCEEEE-----ecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHh
Confidence 36788999999887777 888 9999999999999999999999999999999 9999999887542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
...++|++|++...+ .+|+.+|+.+....++. ...+++.++++.++. ..+.++..||+||+||+++|++++.+
T Consensus 73 ~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 73 HQDLLYLGHQPGIKT--ELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred hhheEEeCCccccCc--CCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 234889998865333 47999999876544321 334567778888773 35678889999999999999999999
Q ss_pred ccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 201 HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 201 a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|+++++||++..||.. +++.+.++.+ ..|++|||++++.+
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 9999999999999983 4444444432 34699999998755
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=257.11 Aligned_cols=196 Identities=18% Similarity=0.122 Sum_probs=157.2
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
.+.++++++++++.|+++.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|....
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~ 78 (510)
T PRK15439 7 TAPPLLCARSISKQYSGVEVL-----KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARL 78 (510)
T ss_pred CCCceEEEEeEEEEeCCceee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCC
Confidence 345689999999999987777 888 9999999999999999999999999999999 99999998875321
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
..++|++|++..++ .+|+.+|+.+.... .....+++.++++.++. ..++++.+||||||||++||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 152 (510)
T PRK15439 79 TPAKAHQLGIYLVPQEPLLFP--NLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEIL 152 (510)
T ss_pred CHHHHHhCCEEEEeccCccCC--CCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHH
Confidence 24899999965433 48999998764321 12234567788888874 45678889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++++.+|++|++|||+..||. .+++.|+++.+ .+|++|||++.+.. +++ |++++.|+++++.
T Consensus 153 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 153 RGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 999999999999999999998 34455555433 24699999999876 444 7888888887754
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=221.91 Aligned_cols=200 Identities=15% Similarity=0.166 Sum_probs=164.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++++++.|+...++ +++ +.+++|.+.+|+||||||||||+.+++.+++ +++|+|.++|.+..
T Consensus 1 MI~i~nv~K~y~~~~vl-----~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~ 72 (252)
T COG4604 1 MITIENVSKSYGTKVVL-----DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKE 72 (252)
T ss_pred CeeehhhhHhhCCEEee-----ccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHH
Confidence 46789999999999999 999 9999999999999999999999999999999 99999999886532
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhc--CCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.++++-|..... ..+||++.+.|++.-| |.+..+++..+.++++.+. +..+++..+|||||+||+.+|+.+
T Consensus 73 LAk~lSILkQ~N~i~--~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 73 LAKKLSILKQENHIN--SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHHHHHHhhchhh--heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee
Confidence 3467777775533 3489999999876433 5566778888899998877 566889999999999999998888
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRI 260 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~~ 260 (287)
+.+.+.+++|||+--||= .+++.++++.+ .+++|-||.+++.. .++ |+++.+|+++|+++...
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~ 228 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHH
Confidence 888888888888888876 44455554443 35689999999887 444 89999999999886543
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=250.88 Aligned_cols=195 Identities=15% Similarity=0.095 Sum_probs=161.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
...+++++++++|+|+...++ +++ +.+.+||++||+|+||||||||+|+|+|.++ |++|+|+++|....
T Consensus 4 ~~~~ll~~~~i~K~FggV~AL-----~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~ 75 (500)
T COG1129 4 STPPLLELRGISKSFGGVKAL-----DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFS 75 (500)
T ss_pred CccceeeeecceEEcCCceee-----ccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCC
Confidence 456789999999999999999 999 9999999999999999999999999999999 99999999986532
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHhc---CC-CCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCc
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~---~~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qr 190 (287)
.-|..++|+....++ +||.||+.++.... +. .+....+++.++|+.++. ..+.++.+||.||||.
T Consensus 76 sp~~A~~~GI~~V~QEl~L~p~--LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~ 153 (500)
T COG1129 76 SPRDALAAGIATVHQELSLVPN--LSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQM 153 (500)
T ss_pred CHHHHHhCCcEEEeechhccCC--ccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHH
Confidence 238999999765554 99999998765432 22 223345567788888873 3677888999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcCc---eEEEeCHHHHHH---HHh----hccccCCC
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~---i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+||+|+..+++++|+|||+.-|++ .+++.++++...+ |||||.++++.+ |+. |+.+..++
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999998 5667777776654 699999999998 544 77665444
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-31 Score=226.75 Aligned_cols=186 Identities=14% Similarity=0.080 Sum_probs=141.6
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cce
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 125 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~~ 125 (287)
+++++++.|+. .. .++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...
T Consensus 2 ~~~~l~~~~~~--~~-----~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 2 ALDKVRYEYEH--LP-----MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred eEEeeeEEeCC--cc-----eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 56788888863 22 466 9999999999999999999999999999999 9999999887542 245
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
++|++|++..++ .+|+.+|+.+.............+++.++++.++. ..+..+.+||+||+||+++|++++.+|++
T Consensus 72 i~~v~q~~~~~~--~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFA--HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCC--CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 899999975443 37999999765332111111234456777887763 34677889999999999999999999999
Q ss_pred EEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 204 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 204 li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
+++|+++..+|.. +++.+.++.+ ..|++||+++++.. +++ |++++.|
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 9999999999993 4445555432 24699999998765 443 5555554
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=232.70 Aligned_cols=201 Identities=15% Similarity=0.151 Sum_probs=156.3
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC------
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ------ 119 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~------ 119 (287)
..+|+++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 6 SAEDVFNISRLYLYINDKAIL-----KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFG 77 (257)
T ss_pred hhhhheeeeeEEEecCCceeE-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECC
Confidence 367899999999999998887 898 9999999999999999999999999999999 9998766554
Q ss_pred CCC--------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhccC------CCCCCCCCC
Q 023126 120 VKP--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFD 184 (287)
Q Consensus 120 ~~~--------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~lS 184 (287)
.+. ...++|++|++..++ .+|+.+|+.+.....+.. .....+++.++++.++.. .+..+..||
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS 155 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQPNPFP--HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLS 155 (257)
T ss_pred cccccCCHHHHhcceEEEccCCccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCC
Confidence 221 245899999976443 379999998764432221 112234567777777642 356778999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
+||+||+++|++++.+|+++++|+|+..||.. +++.+.++.. ..|++||+++.+.. +++ |++++.|+
T Consensus 156 ~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~ 235 (257)
T PRK14246 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235 (257)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999984 4444444432 34799999998865 444 78888888
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 236 ~~~~~~ 241 (257)
T PRK14246 236 SNEIFT 241 (257)
T ss_pred HHHHHh
Confidence 887653
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=236.85 Aligned_cols=202 Identities=9% Similarity=0.052 Sum_probs=154.4
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc-c-cCCCCcccccCCCCC--
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN-K-IWPQKASSFDSQVKP-- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~-~-~~p~~G~i~~~~~~~-- 122 (287)
+.++++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ . .+|++|+|.++|...
T Consensus 36 ~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAV-----KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 56789999999999877666 888 9999999999999999999999999999852 0 013899998887431
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
+..++|++|++..+ . .|+.+|+.+.....+... ....+++.++++.++. ..+.++..|||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPF-P--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred cccchHHhhhcEEEECCCCCCC-c--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 23589999997543 3 499999987654433321 1123445566666552 3466788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..||. .+++.++++.. .+|++|||++++.. |++ |++++.|++.+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998 34444544433 35799999999876 444 78888898887
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 268 ~~~ 270 (286)
T PRK14275 268 LFT 270 (286)
T ss_pred HHh
Confidence 643
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=230.96 Aligned_cols=194 Identities=17% Similarity=0.032 Sum_probs=147.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|++ + |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVEDKEIL-----KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEECCEEEE-----eccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHH
Confidence 3578899999877777 888 999999999999999999999999999994 7 9999999988542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-C------CCCchHHHHHHHHHHhccC---CCCCCC-CCCcccC
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A------PWTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG 188 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~------~~~~~~~~~~~~l~~l~~~---~~~~~~-~lSgG~~ 188 (287)
...++|++|++..++ .+|+.+|+.+...... . ......+++.+.++.++.. .++.+. .||+||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIP--GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred HhhccceEeeeccccccC--CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence 123789999975443 4799999877543221 1 1111234567777777743 355665 5999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH----HHh----hccccCCChH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPP 253 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~----rv~----gr~v~~G~~~ 253 (287)
||+++|++++.+|+++++|||+..||. .+++.+.++.+ .+|++|||++.+.. +++ |++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 999999999999999999999999998 44455555532 24699999998754 333 7777888776
Q ss_pred HH
Q 023126 254 DV 255 (287)
Q Consensus 254 ev 255 (287)
++
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 54
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-31 Score=231.84 Aligned_cols=197 Identities=12% Similarity=0.115 Sum_probs=152.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~- 122 (287)
++++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ | ++|+|.++|...
T Consensus 2 ~~l~~~~l~~~~~~~~~l-----~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 2 PIIEIENFSAYYGEKKAV-----KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred ceEEEEeeEEEeCCceeE-----eeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence 368899999999877767 888 9999999999999999999999999999987 5 899999887432
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++..+ . .|+.+|+.+.....+... ....+.+.+.++.++. ..+.++.+||+|
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTPF-P--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG 150 (250)
T ss_pred cchhhHHHhhhhEEEEecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence 23599999986533 2 699999987654333221 1223345666666653 245678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..+++||+++.+.. |++ |+++..|+++
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999998 34444544432 34699999998765 444 8888889888
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 231 ~~~~ 234 (250)
T PRK14262 231 EIVE 234 (250)
T ss_pred HHHh
Confidence 7653
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=231.79 Aligned_cols=203 Identities=13% Similarity=0.064 Sum_probs=154.9
Q ss_pred cCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCcccccCCCC
Q 023126 46 ANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVK 121 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p---~~G~i~~~~~~ 121 (287)
|.+.++++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++. .| ++|+|.++|..
T Consensus 1 ~~~~~~i~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~ 74 (253)
T PRK14261 1 MTMEIILSTKNLNLWYGEKHAL-----YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL-IPGCRITGDILYNGEN 74 (253)
T ss_pred CCccceEEEeeeEEEECCeeee-----eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC-CCCCCcceEEEECCEE
Confidence 4567899999999999887777 888 99999999999999999999999999998750 02 48999888743
Q ss_pred C----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCC
Q 023126 122 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFD 184 (287)
Q Consensus 122 ~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lS 184 (287)
. ...++|++|++..+ + .|+++|+.+....++... ....+.+.++++.++. ..+..+..||
T Consensus 75 ~~~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 151 (253)
T PRK14261 75 IMDSGADVVALRRKIGMVFQRPNPF-P--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLS 151 (253)
T ss_pred ccccccchhhhhceEEEEecCCccC-c--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCC
Confidence 2 23489999996543 3 499999987655443211 1123345566665542 2457788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
+||+||+++|++++.+|+++++|+|+..||.. +++.+.++.+ ..|++||+++.+.. +++ |++++.|+
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999983 3344444432 34699999999875 444 78888888
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 232 ~~~~~~ 237 (253)
T PRK14261 232 TTQIFE 237 (253)
T ss_pred HHHHHh
Confidence 887643
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=254.57 Aligned_cols=199 Identities=14% Similarity=0.077 Sum_probs=154.9
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCcccccC----------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS---------- 118 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~G~i~~~---------- 118 (287)
++++++++.|+.+.++ +++ +++.+|+++||+||||||||||+++|+|++ + |++|+|.++
T Consensus 1 l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVL-----KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEECCeEee-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEecccccccccc
Confidence 4578899999877777 888 999999999999999999999999999996 7 999998775
Q ss_pred -------------CCC------------------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHH
Q 023126 119 -------------QVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN 167 (287)
Q Consensus 119 -------------~~~------------------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.. .+..++|++|++..++. .+|+.+|+.+.....+.+.....+++.+
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 110 12348999997433332 3799999988655444433333456778
Q ss_pred HHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHH
Q 023126 168 CLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDT 237 (287)
Q Consensus 168 ~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~ 237 (287)
+++.++. ..++++.+||||||||++||+|++.+|++|++|||+..||.. +++.++++.. .+|++|||++.
T Consensus 152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 8888874 346788899999999999999999999999999999999993 4444555532 24699999999
Q ss_pred HHH---HHh----hccccCCChHHHHHHH
Q 023126 238 AMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 238 ~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
+.. |++ |+++..|+++++...+
T Consensus 232 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 876 544 7888888888876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=231.89 Aligned_cols=195 Identities=12% Similarity=0.080 Sum_probs=150.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~-- 122 (287)
.++++++++.|+++.++ +++ +++++||+++|+|+||||||||+++|+|+++ | ++|+|.++|...
T Consensus 3 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFYGDFQAL-----KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMND---LIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEECCceee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---ccCCCCCceEEEECCEEccc
Confidence 46788999999876666 888 9999999999999999999999999999875 3 689999887542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
+..++|++|++.. +. +|+.+|+.+....++... ....+++.+.++.++. ..+.++.+||+||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~-~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNP-FP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQ 151 (250)
T ss_pred cccchHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHH
Confidence 2348999998643 32 699999987654443221 1223455666666652 2366788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++|||++.+.. |++ |++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998 34444444432 34699999998766 444 78888888777
Q ss_pred HH
Q 023126 255 VA 256 (287)
Q Consensus 255 v~ 256 (287)
+.
T Consensus 232 ~~ 233 (250)
T PRK14240 232 LF 233 (250)
T ss_pred HH
Confidence 64
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=235.03 Aligned_cols=199 Identities=17% Similarity=0.084 Sum_probs=154.6
Q ss_pred CccccCccccccc---------ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC
Q 023126 50 PVFGKTRSLVQNK---------TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119 (287)
Q Consensus 50 ~~~~~~~~~~~~~---------~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~ 119 (287)
++++++++++.|+ .+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g 73 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVL-----NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRG 73 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeE-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC
Confidence 4688999999997 35566 888 9999999999999999999999999999999 9999999887
Q ss_pred CCC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhcc---CCCCCCCCCC
Q 023126 120 VKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN---QGSVYAPSFD 184 (287)
Q Consensus 120 ~~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lS 184 (287)
... ...++|++|++...+.+..++.+++.+....+ +........++.++++.++. ..+..+..||
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 153 (268)
T PRK10419 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLS 153 (268)
T ss_pred EeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCC
Confidence 542 23599999996432333478888876543322 22222233467788888774 2467888999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
+||+||+++|++++.+|+++++|+++..||.. +.+.++++.+ ..|++||+++.+.. +++ |++++.
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999999999999983 4455555432 24699999999875 444 788888
Q ss_pred CChHHHH
Q 023126 250 GKPPDVA 256 (287)
Q Consensus 250 G~~~ev~ 256 (287)
|++.++.
T Consensus 234 g~~~~~~ 240 (268)
T PRK10419 234 QPVGDKL 240 (268)
T ss_pred CChhhcc
Confidence 8887754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=230.62 Aligned_cols=197 Identities=11% Similarity=0.076 Sum_probs=152.1
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~~~ 122 (287)
.++++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+++ |+ +|+|.++|...
T Consensus 2 ~~~l~~~~l~~~~~~~~il-----~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQVL-----KNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENI 73 (251)
T ss_pred CceEEEEEEEEEECCeeEe-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEc
Confidence 4678899999999877667 888 9999999999999999999999999999998 87 69998877432
Q ss_pred ----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 123 ----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
...++|++|++..+ + .|+.+|+.+.....+.... ...+.+.+.++.++. ..+.++.+||+
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 150 (251)
T PRK14249 74 YSPNLDVVNLRKRVGMVFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG 150 (251)
T ss_pred cccccChHHhhceEEEEecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH
Confidence 24599999997543 2 4899999876543332211 122345555555542 34677889999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||+||+++|++++.+|+++++|+|+..||. .+++.+.++.. .+|++||+++.+.. +++ |++++.|++
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~ 230 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRT 230 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999998 34444444432 34699999999876 444 788888887
Q ss_pred HHHH
Q 023126 253 PDVA 256 (287)
Q Consensus 253 ~ev~ 256 (287)
+++.
T Consensus 231 ~~~~ 234 (251)
T PRK14249 231 GEIF 234 (251)
T ss_pred HHHH
Confidence 7764
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=223.66 Aligned_cols=160 Identities=17% Similarity=0.112 Sum_probs=125.5
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----------CceeEEEeCCCC-CCCccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----------PDVATVLPMDGF-HLYLSQ 140 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----------~~~i~~v~qd~~-~~~~~~ 140 (287)
+++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. ...++|++|++. ..+.
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-- 83 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA-- 83 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc--
Confidence 888 9999999999999999999999999999999 9999998887432 234899999963 2332
Q ss_pred CCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh---
Q 023126 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--- 215 (287)
Q Consensus 141 ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe--- 215 (287)
.|+.+|+.+....++.......+++.++++.++ ...+.++.+||+||+||+++|++++.+|+++++|||+..||.
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 699999987644333222222345677777776 345678889999999999999999999999999999999999
Q ss_pred -hhHHHHHHhhc---CceEEEeCHHH
Q 023126 216 -GVWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 216 -~~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
.+++.+.++.. ..+++|||+++
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeecccc
Confidence 34444444432 24699999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=254.76 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=156.2
Q ss_pred CCCccccCccccccc-----------ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 48 AQPVFGKTRSLVQNK-----------TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
..++++++++++.|+ .+.++ +++ +.+++|+++||+||||||||||+|+|+|++ |++|+|
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i 342 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVV-----KNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEI 342 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceee-----ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEE
Confidence 456899999999995 23455 888 999999999999999999999999999987 679999
Q ss_pred ccCCCCC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC--CCCCchHHHHHHHHHHhccC---CCCC
Q 023126 116 FDSQVKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVY 179 (287)
Q Consensus 116 ~~~~~~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~ 179 (287)
.++|.+. +..++|++|++.....+.+|+.+|+.+....++ .+.....+++.++++.++.. .+++
T Consensus 343 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 422 (529)
T PRK15134 343 WFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY 422 (529)
T ss_pred EECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 9887432 234899999963212234799999987643332 22222345677888888742 4678
Q ss_pred CCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----h
Q 023126 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----K 244 (287)
Q Consensus 180 ~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----g 244 (287)
+.+||||||||++||++++.+|++|++|||+..||. .+++.++++.+ .+|++|||++.+.. |++ |
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 889999999999999999999999999999999999 34555555432 24699999999876 554 8
Q ss_pred ccccCCChHHHH
Q 023126 245 RHISTGKPPDVA 256 (287)
Q Consensus 245 r~v~~G~~~ev~ 256 (287)
++++.|+++++.
T Consensus 503 ~i~~~~~~~~~~ 514 (529)
T PRK15134 503 EVVEQGDCERVF 514 (529)
T ss_pred EEEEEcCHHHHh
Confidence 888889888774
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=233.24 Aligned_cols=205 Identities=11% Similarity=0.069 Sum_probs=154.4
Q ss_pred hccCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCcccccCCC
Q 023126 44 RNANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQV 120 (287)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~--~~~p~~G~i~~~~~ 120 (287)
.+.++.++++++++++.|+.+.++ +++ +++++|+++||+|+||||||||+++|+|+++ ..+|++|+|.++|.
T Consensus 17 ~~~~~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 17 ETAPKKVVFDTQNLNLWYGEDHAL-----KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred ccCCCceEEEEeeeEEEECCccee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 345678899999999999877766 888 9999999999999999999999999999985 11148999988874
Q ss_pred CC----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch-HHHHHHHHHHhc------cCCCCCCCCC
Q 023126 121 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLR------NQGSVYAPSF 183 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~-~~~~~~~l~~l~------~~~~~~~~~l 183 (287)
+. ...++|++|++..+ . .|+.+|+.+.....+...... .+.+.+.++.++ ...+.++.+|
T Consensus 92 ~~~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L 168 (271)
T PRK14238 92 NIFDKSYSVEELRTNVGMVFQKPNPF-P--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL 168 (271)
T ss_pred EcccccccHHHHhhhEEEEecCCccc-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence 32 23589999996543 2 499999987654333221111 223445554432 2346678899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||||+||+++|++++.+|+++++|+++..||.. +.+.+.++.. ..|++|||++++.. |++ |++++.|
T Consensus 169 SgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999993 3344444432 24699999999776 444 7888888
Q ss_pred ChHHHH
Q 023126 251 KPPDVA 256 (287)
Q Consensus 251 ~~~ev~ 256 (287)
++.++.
T Consensus 249 ~~~~~~ 254 (271)
T PRK14238 249 DTDKIF 254 (271)
T ss_pred CHHHHH
Confidence 887764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=231.81 Aligned_cols=189 Identities=17% Similarity=0.156 Sum_probs=145.7
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEE
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 128 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~ 128 (287)
++++++++++.|+++.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.+++. ..++|
T Consensus 3 ~~l~~~~l~~~~~~~~vl-----~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~~ 71 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVL-----SDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIGY 71 (251)
T ss_pred cEEEEeceEEEECCceEE-----EeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEEE
Confidence 578999999999887777 888 9999999999999999999999999999999 99999988763 34999
Q ss_pred EeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEE
Q 023126 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (287)
Q Consensus 129 v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~ 206 (287)
++|++.....-..++.+++.+ . + ....+++.++++.++. ..+.++..||+||+||+++|++++.+|+++++
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~----~--~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 144 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRL----R--P-GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144 (251)
T ss_pred eccccccccccChhHHHHHhc----c--c-cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999964322111244443321 1 1 1123456677777763 34677889999999999999999999999999
Q ss_pred cCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh---hccccCCChHHHH
Q 023126 207 DGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 256 (287)
Q Consensus 207 d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~---gr~v~~G~~~ev~ 256 (287)
|+|+..||. .+++.+.++.. ..|++|||++++.. +++ +++++.|+++++.
T Consensus 145 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~g~~~~~~ 208 (251)
T PRK09544 145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVS 208 (251)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEeeCCHHHHh
Confidence 999999998 34444544432 24689999999876 443 6677888887764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=230.17 Aligned_cols=199 Identities=14% Similarity=0.067 Sum_probs=151.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~---- 122 (287)
++++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++. ..|++|+|.++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~l-----~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 3 NIISAKDVHLSYGNYEAL-----HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred ceEEEEeeEEEECCeeee-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 478899999999887777 888 99999999999999999999999999999850 002799998887532
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc-hHHHHHHHHHHhcc------CCCCCCCCCCcccCC
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~-~~~~~~~~l~~l~~------~~~~~~~~lSgG~~q 189 (287)
...++|++|++..+ . .|+.+|+.+.....+..... ..+++.++++.++. ..+.++.+||+||+|
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPF-P--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred chHHHhhccEEEEecCCccC-C--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 23489999996533 3 69999998765443332111 22345666766653 235677899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|+++|++++.+|+++++|+++..||.. +++.+.++.. ..|++||+++.+.. |++ |++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999993 3444444432 34699999998766 544 7888888887764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=235.61 Aligned_cols=197 Identities=17% Similarity=0.145 Sum_probs=152.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--------CcccccCCCC
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASSFDSQVK 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~--------~G~i~~~~~~ 121 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |+ +|+|.++|..
T Consensus 1 ml~~~nl~~~~~~~~il-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 1 MLTADHLHVARRHRAIL-----RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred CeEEEEEEEEECCEeEE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEE
Confidence 36788999999887777 888 9999999999999999999999999999998 98 8999988754
Q ss_pred C--------CceeEEEeCCCCCCCcccCCccccHHHHHHhc----CCCCCchHHHHHHHHHHhcc--CCCCCCCCCCccc
Q 023126 122 P--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 187 (287)
Q Consensus 122 ~--------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~ 187 (287)
. ...++|++|++..++. +|+.+|+.+..... +.......+++.++++.++. ..++++.+|||||
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCC--CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 2 1247999999654343 79999987643211 11111233456777777763 3567888999999
Q ss_pred CCchhhhhhhc---------cCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----
Q 023126 188 GDPVEDDILVG---------LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---- 243 (287)
Q Consensus 188 ~qrv~ia~al~---------~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~---- 243 (287)
+||+++|++++ .+|++|++|+++..||. .+++.++++.. ..|++|||++.+.. +++
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999 59999999999999998 44455554432 24699999998865 444
Q ss_pred hccccCCChHHHHH
Q 023126 244 KRHISTGKPPDVAK 257 (287)
Q Consensus 244 gr~v~~G~~~ev~~ 257 (287)
|++++.|+++++..
T Consensus 231 G~i~~~g~~~~~~~ 244 (272)
T PRK13547 231 GAIVAHGAPADVLT 244 (272)
T ss_pred CeEEEecCHHHHcC
Confidence 78888888877643
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=233.88 Aligned_cols=199 Identities=15% Similarity=0.103 Sum_probs=153.4
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVK 121 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~ 121 (287)
..++++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ | ++|+|.++|..
T Consensus 18 ~~~~l~i~nl~~~~~~~~il-----~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~ 89 (276)
T PRK14271 18 AAPAMAAVNLTLGFAGKTVL-----DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRS 89 (276)
T ss_pred cCcEEEEeeEEEEECCEEEe-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEE
Confidence 45688999999999987777 888 9999999999999999999999999999997 7 69999888743
Q ss_pred C---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhccC------CCCCCCCCCc
Q 023126 122 P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 185 (287)
Q Consensus 122 ~---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lSg 185 (287)
. ...++|++|++.. ++ .|+++|+.+....... ......+++.+.++.++.. .+..+.+||+
T Consensus 90 i~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSg 166 (276)
T PRK14271 90 IFNYRDVLEFRRRVGMLFQRPNP-FP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSG 166 (276)
T ss_pred ccccchhHHHhhheEEeccCCcc-CC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCH
Confidence 2 2358999998653 33 6999999875432221 1111223445666666532 3466789999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||+||++||++++.+|+++++|+++..+|.. +.+.+.++.+ .+|++||+++++.. |++ |++++.|++
T Consensus 167 Gq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~ 246 (276)
T PRK14271 167 GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246 (276)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999983 3344444432 34699999998876 444 788888988
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 247 ~~~~~ 251 (276)
T PRK14271 247 EQLFS 251 (276)
T ss_pred HHHHh
Confidence 88754
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=254.15 Aligned_cols=199 Identities=16% Similarity=0.193 Sum_probs=154.1
Q ss_pred CCCccccCcccccccc-----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC-CC
Q 023126 48 AQPVFGKTRSLVQNKT-----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QV 120 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~-~~ 120 (287)
..++++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++ +.
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il-----~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~ 347 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAV-----DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGD 347 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEE-----eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCC
Confidence 4568999999999952 3456 888 9999999999999999999999999999999 999999884 32
Q ss_pred C--------------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC-------CCCC
Q 023126 121 K--------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVY 179 (287)
Q Consensus 121 ~--------------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~ 179 (287)
. .+..++|++|++..++ .+|+.+|+.+.... ..+.....+++.++++.++.. .+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~--~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 348 EWVDMTKPGPDGRGRAKRYIGILHQEYDLYP--HRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred ccccccccchhhHHHHhhhEEEEccCcccCC--CCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 1 1234899999864333 48999999875322 222222334667788888743 3678
Q ss_pred CCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----h
Q 023126 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----K 244 (287)
Q Consensus 180 ~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----g 244 (287)
+.+||||||||++||++++.+|++|++|||+..||. .+++.++++.. .+|++|||++++.. |++ |
T Consensus 425 ~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G 504 (520)
T TIGR03269 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDG 504 (520)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999 34455544432 24699999999876 444 7
Q ss_pred ccccCCChHHHHH
Q 023126 245 RHISTGKPPDVAK 257 (287)
Q Consensus 245 r~v~~G~~~ev~~ 257 (287)
++++.|+++++..
T Consensus 505 ~i~~~g~~~~~~~ 517 (520)
T TIGR03269 505 KIVKIGDPEEIVE 517 (520)
T ss_pred EEEEECCHHHHHh
Confidence 8888888777643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=227.83 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=141.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCcccccCCCCC------CceeEEEeCCCCCCCcccC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP------PDVATVLPMDGFHLYLSQL 141 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p----~~G~i~~~~~~~------~~~i~~v~qd~~~~~~~~l 141 (287)
+++ +++++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+. ...++|++|++...+.+.+
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 667 9999999999999999999999999999998 9 899999988542 2468999999742233447
Q ss_pred CccccHHHHHHhcCCCCCchHHHHHHHHHHhccC-----CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh-
Q 023126 142 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG- 215 (287)
Q Consensus 142 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe- 215 (287)
|+.+|+.+.....+.......+++.++++.++.. .+.++..||+||+||+++|++++.+|+++++|+|+..+|.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 8888887654433332222345677888887743 4677889999999999999999999999999999999998
Q ss_pred ---hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 216 ---GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 216 ---~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
.+++.+.++.. ..|++||+++++.. +++ |++++.|+++++.
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 34455555432 24699999998865 444 7888888887764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=229.52 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=152.1
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCcccccCCCCC-
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p---~~G~i~~~~~~~- 122 (287)
+.++++++++++.|+.+.++ +++ +++.+|+++||+|+||||||||+++|+|+++. .| ++|+|.++|...
T Consensus 2 ~~~~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~ 75 (252)
T PRK14255 2 AKKIITSSDVHLFYGKFEAL-----KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIY 75 (252)
T ss_pred CcceEEEEeEEEEECCeeEE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEcc
Confidence 34678999999999987777 888 99999999999999999999999999998630 04 589998887532
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc-hHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~-~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++..+ . .|+.+|+.+.....+..... ..+++.+.++.++. ..+..+.+||+|
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 152 (252)
T PRK14255 76 APNEDVVQLRKQVGMVFQQPNPF-P--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGG 152 (252)
T ss_pred cccccHHHhcCeEEEEECCCccC-C--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHH
Confidence 23589999986533 2 59999998765443322111 12344555665542 245677899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++|+++..||. .+.+.+.++.+ ..|++||+++.+.. |++ |++++.|++.
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999 34444444432 34799999999876 544 7888888887
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 233 ~~~~ 236 (252)
T PRK14255 233 QMFL 236 (252)
T ss_pred HHhc
Confidence 7643
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=223.58 Aligned_cols=181 Identities=14% Similarity=0.045 Sum_probs=143.8
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.+.++++++++++.|+++.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~ 78 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEPVF-----GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRG 78 (214)
T ss_pred CCcceEEEeeEEEecCCceee-----ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccch
Confidence 345689999999999887777 888 9999999999999999999999999999999 9999999887543
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++..+. .+|+.+|+.+.....+ ....+.+.+.++.++ ...+.++..||+||+||+++|++++
T Consensus 79 ~~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 79 DRSRFMAYLGHLPGLKA--DLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred hhhhceEEeecCccccc--CCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 234899999865433 4799999887644332 123345567777776 3457788899999999999999999
Q ss_pred cCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+|+++++|+++..+|.. +++.+.++.+ ..|++|||++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPP 202 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhh
Confidence 999999999999999994 3344433322 24699999998865
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=227.73 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=138.3
Q ss_pred CCccccCcccccccccch----hhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLK----VLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~----~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~ 123 (287)
.++++++++++.|..+.. ...+..+++ |.+++||++||+|+||||||||.|+|.|+++ |++|+|++.|.+..
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~ 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDIT 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchh
Confidence 357788888888865321 012344777 9999999999999999999999999999999 99999988775421
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
. ++ .....+++.++|+.++ ....+++.+|||||+||+.||+|++.+
T Consensus 79 ~----------------~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 79 K----------------LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred h----------------cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 0 11 2234567888999888 355789999999999999999999999
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhh-------cC-ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMF-------DE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~-------~~-~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++++.|+++..||-.+...+.+++ .. .+|||||+.++.. |++ |++++.|..++++.
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999984333333332 22 3699999999988 554 99999999999875
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=228.89 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=150.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~-- 122 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ | ++|++.++|...
T Consensus 3 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFYGENQAL-----KSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEECCeeee-----ecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEccc
Confidence 67889999999887777 898 9999999999999999999999999999987 7 489998877432
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCCCCCcccC
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 188 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG~~ 188 (287)
...++|++|++..+ . .|+.+|+.+.....+.... ...+++.+.++.++. ..+.++.+||+||+
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~-~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 151 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPF-P--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQ 151 (249)
T ss_pred ccchHHHHhheeEEecCCCcC-c--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHH
Confidence 23489999996533 2 6999999876443332211 122345556665542 23567789999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
||++||++++.+|+++++|+++..+|.. +++.+.++.. .+|++||+++.+.. |++ |++++.|+++++
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999993 3444444432 34699999998776 444 888888887765
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 232 ~ 232 (249)
T PRK14253 232 F 232 (249)
T ss_pred H
Confidence 3
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=225.47 Aligned_cols=178 Identities=15% Similarity=0.099 Sum_probs=142.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 5 ~~~i~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKIL-----NNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKP 76 (225)
T ss_pred CceEEEeccEEeeCCceee-----eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCH
Confidence 4578999999999877777 888 9999999999999999999999999999999 9999999887532
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~a 196 (287)
...++|++|++..+ . .|+.+|+.+....++. ....+++.++++.++. ..+.++.+||+||+||+++|++
T Consensus 77 ~~~~~~i~~~~q~~~l~-~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLF-G--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred HHHHhccEEEecccccc-c--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHH
Confidence 23589999996533 3 4999998875433321 1234456778888774 2467888999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
++.+|+++++|+|+..||.. +.+.+.++.. ..|++|||++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 99999999999999999993 3344444432 2469999999874
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=230.95 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=149.5
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~---- 122 (287)
++++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++.. .|++|+|.++|...
T Consensus 9 ~~l~i~~v~~~~~~~~il-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAV-----KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred eEEEEeeeEEEECCEEEe-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 578999999999877667 888 999999999999999999999999999997500 02789998887532
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc------CCCCCCCCCCcccCCc
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~~qr 190 (287)
...++|++|++..+ + .|+.+|+.+.....+.. ....+++.++++.++. ..+..+.+|||||+||
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPF-P--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred cChHHHhhhEEEEccCCccc-c--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH
Confidence 23489999986533 2 48999998754332221 1122344455555442 3456788999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh-------------hcccc
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL-------------KRHIS 248 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~-------------gr~v~ 248 (287)
++||++++.+|+++++|+++..||.. +++.+.++.. .+|++||+++++.. |++ |++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999993 3444444432 34699999999877 332 67788
Q ss_pred CCChHHHHH
Q 023126 249 TGKPPDVAK 257 (287)
Q Consensus 249 ~G~~~ev~~ 257 (287)
.|+++++..
T Consensus 240 ~~~~~~~~~ 248 (264)
T PRK14243 240 FDRTEKIFN 248 (264)
T ss_pred eCCHHHHHh
Confidence 888888753
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=225.15 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=139.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC------------CCceeEEEeCCCCCCCcccCCc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------PPDVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~------------~~~~i~~v~qd~~~~~~~~ltv 143 (287)
+.++..-+++|.|+||||||||+|+|+|+.+ |+.|.|.++|.. .++++||+|||.-.++ ++||
T Consensus 19 ~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFp--H~tV 93 (352)
T COG4148 19 FTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFP--HYTV 93 (352)
T ss_pred ccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhhheeeeEeecccccc--ceEE
Confidence 5555557999999999999999999999999 999999888742 2456999999976555 4999
Q ss_pred cccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hh
Q 023126 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GV 217 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~ 217 (287)
+.|+.|+.... ....+.++.+.++ ...++++.+|||||||||+|++||...|++|++||++.-||+ ++
T Consensus 94 rgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei 167 (352)
T COG4148 94 RGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI 167 (352)
T ss_pred ecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH
Confidence 99999875432 3344555556666 567889999999999999999999999999999999999999 55
Q ss_pred HHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 218 WKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 218 ~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+..++.+.++ ++||||.++++.+ +++ |++.+.|..+++..
T Consensus 168 lpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 168 LPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 5555555554 3599999999988 655 89999999888754
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=252.08 Aligned_cols=196 Identities=17% Similarity=0.034 Sum_probs=152.0
Q ss_pred CCCCccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc
Q 023126 47 NAQPVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 124 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~ 124 (287)
+.+++++++++++.|+ ++.++ +++ +.|.+|++++|+||||||||||+++|+|+++ |++|+|.+++. .
T Consensus 2 ~~~~~l~i~~l~~~y~~~~~il-----~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~---~ 70 (556)
T PRK11819 2 MAQYIYTMNRVSKVVPPKKQIL-----KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG---I 70 (556)
T ss_pred cccEEEEEeeEEEEeCCCCeee-----eCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---C
Confidence 4567999999999998 67777 999 9999999999999999999999999999999 99999987643 3
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHh--------------cCCCCC----------------------chHHHHHHH
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT----------------------FNPLLLLNC 168 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~--------------~~~~~~----------------------~~~~~~~~~ 168 (287)
.++|++|++...+ .+|+.+|+.+.... ...... ....++.++
T Consensus 71 ~i~~v~Q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 71 KVGYLPQEPQLDP--EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred EEEEEecCCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 5999999965433 48999999764211 011100 012345667
Q ss_pred HHHhcc-CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHH----HHHHhhcCceEEEeCHHHHHH---
Q 023126 169 LKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFDEKWFIEVDLDTAMQ--- 240 (287)
Q Consensus 169 l~~l~~-~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~----~l~~~~~~~i~vtHd~~~~~~--- 240 (287)
++.++. ..++++.+||||||||++||++++.+|++|++|||+..||+...+ .++++...+|++|||++++..
T Consensus 149 l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 149 MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred HHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcC
Confidence 777763 346788899999999999999999999999999999999994444 444443345799999999876
Q ss_pred HHh----hccc-cCCChHHH
Q 023126 241 RVL----KRHI-STGKPPDV 255 (287)
Q Consensus 241 rv~----gr~v-~~G~~~ev 255 (287)
+++ |+++ ..|..++.
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred eEEEEeCCEEEEecCCHHHH
Confidence 444 6765 56776654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-30 Score=278.55 Aligned_cols=203 Identities=15% Similarity=0.062 Sum_probs=168.0
Q ss_pred CCCCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
..+.+++++++++.|+. +.++ +++ +.|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1933 ~~~~~L~v~nLsK~Y~~~~~~aL-----~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257 1933 NKTDILRLNELTKVYSGTSSPAV-----DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSIL 2004 (2272)
T ss_pred CCCceEEEEEEEEEECCCCceEE-----EeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECc
Confidence 34568999999999986 4677 888 9999999999999999999999999999999 9999999988543
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
...+||++|++.... .+|++|++.+....++.+.....+.+.++++.++ ...++++.+||||||||+++|
T Consensus 2005 ~~~~~~r~~IGy~pQ~~~L~~--~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2005 TNISDVHQNMGYCPQFDAIDD--LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred chHHHHhhhEEEEeccccCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence 245999999865443 4899999998776666654434456677888877 455788999999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
+|++.+|+++++|||+..+|+ .+|+.+.++.+. +|++||+++++.. |++ |++++.|+++++...+
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999999 566666665432 4699999999987 554 8899999999875544
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-30 Score=231.80 Aligned_cols=202 Identities=11% Similarity=0.028 Sum_probs=153.6
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~- 122 (287)
..+++++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++. .+|++|+|.++|.+.
T Consensus 21 ~~~~~l~~~nl~~~~~~~~il-----~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 21 DEQTALEVRNLNLFYGDKQAL-----FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CCCcEEEEEEEEEEECCeeEe-----eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 456789999999999877777 888 99999999999999999999999999999860 012799998877432
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
+..++|++|++..+ . .|+.+|+.+.....+.... ...+++.+.++.++. ..+..+.+||+|
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPF-P--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGG 172 (272)
T ss_pred ccccCHHHHhccEEEEecCCccC-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHH
Confidence 23589999986533 3 3899999876443332111 123445666666553 245678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++|+++..||.. +++.+.++.+ ..|++||+++++.. |++ |++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999993 4444444432 24689999999765 544 7888888887
Q ss_pred HHH
Q 023126 254 DVA 256 (287)
Q Consensus 254 ev~ 256 (287)
++.
T Consensus 253 ~~~ 255 (272)
T PRK14236 253 TLF 255 (272)
T ss_pred HHh
Confidence 764
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-30 Score=233.02 Aligned_cols=210 Identities=17% Similarity=0.128 Sum_probs=168.0
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-- 121 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~-- 121 (287)
..++++.++|+++.|+.....+.+. +++ |.+.+||.+||+|+||||||-.++.+.++++.. .--+|+|.++|.+
T Consensus 2 ~~~~lL~v~nLsV~f~~~~~~~~aV-k~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 2 MTMPLLSIRNLSVAFHQEGGTVEAV-KGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CCCcceeeeccEEEEecCCcceEee-ccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 4678999999999998433222222 677 999999999999999999999999999999631 1135788888864
Q ss_pred ----------CCceeEEEeCCCCCCCcccCCccccHHHHHHh-cCCCCCchHHHHHHHHHHhcc-----CCCCCCCCCCc
Q 023126 122 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRN-----QGSVYAPSFDH 185 (287)
Q Consensus 122 ----------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~l~~-----~~~~~~~~lSg 185 (287)
..+.|+++||+++.-.++-.|+...+...... .+...+...+++.++|+.++. ..+.++.+|||
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 24569999999988777777888888776654 455666778899999999983 34678999999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----C----ceEEEeCHHHHHH---HHh----hccccCC
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~----~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||+|||+||+|++..|++||.|+++..||-.+...+.+++. + .+|||||+..+.+ |++ |++++.|
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecC
Confidence 99999999999999999999999999999844444433332 2 3699999999988 665 8999999
Q ss_pred ChHHHHH
Q 023126 251 KPPDVAK 257 (287)
Q Consensus 251 ~~~ev~~ 257 (287)
.++++..
T Consensus 241 ~t~~lF~ 247 (534)
T COG4172 241 TTETLFA 247 (534)
T ss_pred cHHHHhh
Confidence 9888764
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-30 Score=223.81 Aligned_cols=180 Identities=17% Similarity=0.086 Sum_probs=138.5
Q ss_pred ccccCcccccccc-------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC--CC
Q 023126 51 VFGKTRSLVQNKT-------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QV 120 (287)
Q Consensus 51 ~~~~~~~~~~~~~-------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~--~~ 120 (287)
+++++++++.|+. ..++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++ |.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~ 72 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVL-----KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGA 72 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEE-----ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCC
Confidence 3677889999963 3456 888 9999999999999999999999999999999 999999886 31
Q ss_pred --CC------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCC
Q 023126 121 --KP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF 183 (287)
Q Consensus 121 --~~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~l 183 (287)
+. ...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .+.++.+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIP--RVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred ccchhhcCHHHHHHHHhcceEEEecccccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 21 135899999965433 479999998754433322222345667788877742 35678899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|+||+||+++|++++.+|+++++|||+..+|.. +.+.++++.+ ..+++||+++.+..
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVREL 214 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999999999999999999999999999993 4444444432 24699999887753
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-30 Score=223.94 Aligned_cols=170 Identities=16% Similarity=0.117 Sum_probs=133.4
Q ss_pred cccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------------
Q 023126 56 RSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------ 122 (287)
Q Consensus 56 ~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------------ 122 (287)
++++.|++.. + ++ +++++ ++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 5 ~l~~~~~~~~-~------~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPDFT-L------KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCCee-e------CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhhhhH
Confidence 7889998753 2 55 99999 9999999999999999999999999 9999998877432
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
...++|++|+...++ .+|+.+|+.+....+ ......+++.++++.++. ..+.++.+|||||+||+++|++++.+
T Consensus 74 ~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 74 QRKIGLVFQQYALFP--HLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred hhcEEEEecCCccCC--CCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 235899999965433 379999988754322 112234466778888773 34678889999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+++++|+|+..||. .+++.+.++.. ..|++|||++++..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHH
Confidence 999999999999999 34445555432 24699999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-30 Score=207.76 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=159.8
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC--------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~-------- 121 (287)
.+.++++.+.||....+ -++ +..+.|+.+.++||||+|||||++.|.=+.- |.+|+..+.+..
T Consensus 2 sirv~~in~~yg~~q~l-----fdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 2 SIQLNGINCFYGAHQAL-----FDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred ceEEcccccccccchhe-----eeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCcc
Confidence 35678999999988777 677 9999999999999999999999999998887 999997665532
Q ss_pred ------CCceeEEEeCCCCCCCcccCCccccHHHH-HHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchh
Q 023126 122 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 122 ------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~-~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ 192 (287)
.++.+|+++|. |++++ ++||.+|+... .+..|.++.+...++.++|.++. ...++.+-.|||||+|||+
T Consensus 74 ~k~i~~lr~~vgmvfqq-y~lwp-hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva 151 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQ-YNLWP-HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred HHHHHHHHHhhhhhhhh-hccCc-hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence 12448999998 44443 59999998774 45667777777778888998877 6778888899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChh----hHHHHHHhhcCc---eEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~~~---i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
||+|++.+|++|++|+++..||++ +...++++...+ +++||..+++.. +++ |++++.|+..-
T Consensus 152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 999999999999999999999995 445556666655 499999999987 665 89999887543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-31 Score=260.27 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=154.5
Q ss_pred CCccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+.-+++++++++|+.. ..+ +++ +.+++||.+||+|+||||||||+|+|.|++. |++|+|.++|.+.
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL-----~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i 540 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVL-----EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDI 540 (709)
T ss_pred CceEEEEEEEEEeCCCCcchh-----hceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhc
Confidence 3457889999999976 566 888 9999999999999999999999999999999 9999999999764
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCC----CCCCC
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFD 184 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~lS 184 (287)
++.++|++||++.+. -|++||+.+. .|... .+.+.+++...+ .+.+.. -..||
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~---gSI~eNi~l~-----~p~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LS 611 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFS---GSIRENIALG-----NPEAT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLS 611 (709)
T ss_pred CHHHHHhheeEEcccchhhc---CcHHHHHhcC-----CCCCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCC
Confidence 456999999987655 4899999864 23222 233333332222 233333 34899
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhh--cCceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~--~~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|+..+|++|++||++.-||+ .+.+.+.+.. .+.|+|+|.+..+.. |++ |+++++|+.
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~ 691 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSH 691 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCH
Confidence 9999999999999999999999999999999 3555556665 456899999999988 665 999999999
Q ss_pred HHHHHH
Q 023126 253 PDVAKW 258 (287)
Q Consensus 253 ~ev~~~ 258 (287)
+|+...
T Consensus 692 ~ell~~ 697 (709)
T COG2274 692 EELLAQ 697 (709)
T ss_pred HHHHHh
Confidence 998754
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-30 Score=222.87 Aligned_cols=176 Identities=14% Similarity=0.012 Sum_probs=140.5
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----Cc
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PD 124 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~ 124 (287)
+++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 2 ~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRGGRVLF-----SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEECCeEEE-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHh
Confidence 57889999999877777 888 9999999999999999999999999999999 9999999887542 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|+...++ .+|+.+|+.+.....+. ..+++.++++.++. ..+.++.+||+||+||+++|++++.+|+
T Consensus 74 ~~~~~~~~~~~~~--~~tv~~~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 74 ACHYLGHRNAMKP--ALTVAENLEFWAAFLGG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred hcEEecCCCcCCC--CCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 4789987754333 37999998775433321 23456777887773 3467778999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++++|+|+..+|. .+++.+.++.. ..+++||+++++..
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 9999999999998 44455554432 24699999998765
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-30 Score=228.31 Aligned_cols=196 Identities=14% Similarity=0.070 Sum_probs=151.6
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~- 122 (287)
++++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ | ++|+|.++|...
T Consensus 6 ~~l~~~~l~~~~~~~~il-----~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAI-----EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred ceEEEEEEEEEECCeEee-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence 468899999999877666 888 9999999999999999999999999999987 6 489999887532
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++..+ + .|+.+|+.+.....+. +.....+.+.+.++.++. ..+.++.+||+|
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 154 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPF-P--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154 (259)
T ss_pred ccccchHhhhhheEEEecccccC-C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 13589999996533 2 6999999876443321 222223455666766653 345678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HH--h-------hcccc
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L-------KRHIS 248 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv--~-------gr~v~ 248 (287)
|+||++||++++.+|+++++|+++..+|. .+++.+.++.. .+|++||+++++.. |+ + |++++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 99999999999999999999999999998 44455555432 34699999999876 32 2 67778
Q ss_pred CCChHHHH
Q 023126 249 TGKPPDVA 256 (287)
Q Consensus 249 ~G~~~ev~ 256 (287)
.|++.++.
T Consensus 235 ~~~~~~~~ 242 (259)
T PRK14260 235 FGVTTQIF 242 (259)
T ss_pred eCCHHHHh
Confidence 88888764
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-30 Score=249.21 Aligned_cols=194 Identities=12% Similarity=0.071 Sum_probs=153.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
.+++++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..+
T Consensus 316 ~~~~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i 384 (530)
T PRK15064 316 HRNALEVENLTKGFDNGPLF-----KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANI 384 (530)
T ss_pred CCceEEEEeeEEeeCCceee-----cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEE
Confidence 35689999999999887777 888 9999999999999999999999999999999 99999988764 459
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
+|++|+....+.+.+|+.+++.+.. . .....+++.++++.++. ..+.++.+||||||||+++|++++.+|++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~----~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l 459 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWR----Q-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV 459 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhc----c-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE
Confidence 9999986432333478888875321 1 11234567788888764 34778899999999999999999999999
Q ss_pred EEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH---HHh----hccc-cCCChHHHHH
Q 023126 204 VIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 204 li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~---rv~----gr~v-~~G~~~ev~~ 257 (287)
|++|||+..||.. +++.+.++...+|++|||++++.. |++ |+++ ..|++.++.+
T Consensus 460 llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 460 LVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999994 344444443345799999999876 444 6776 6788777643
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-30 Score=229.51 Aligned_cols=199 Identities=14% Similarity=0.083 Sum_probs=151.0
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~ 120 (287)
+..++++++++++.|+.+.++ +++ +.+.+||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 16 ~~~~~l~~~nl~~~~~~~~~l-----~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~ 87 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGFLAL-----VDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMND---LIPGAKVEGRLLYRDR 87 (274)
T ss_pred CCCceEEEeeEEEEeCCeEEE-----eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---cccCCCcCceEEECCE
Confidence 455689999999999887677 888 9999999999999999999999999999985 4 5899988875
Q ss_pred CC----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc------cCCCCCCCCCC
Q 023126 121 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR------NQGSVYAPSFD 184 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~------~~~~~~~~~lS 184 (287)
.. ...++|++|++..+ . .++.+|+.+.....+... ...+.+.+.++.++ ...+.++.+||
T Consensus 88 ~l~~~~~~~~~~~~~i~~v~q~~~l~-~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 163 (274)
T PRK14265 88 NIYDSQINSVKLRRQVGMVFQRPNPF-P--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALS 163 (274)
T ss_pred ecccccchhHHHhhcEEEEccCCccc-c--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCC
Confidence 42 23589999996543 2 489999987543322211 12233445555544 23467788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HH--h----------
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L---------- 243 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv--~---------- 243 (287)
|||+||+++|+|++.+|+++++|+++..||.. +++.+.++.. .+|++|||++.+.. |+ +
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999993 4444444432 24699999999876 32 1
Q ss_pred -hccccCCChHHHHH
Q 023126 244 -KRHISTGKPPDVAK 257 (287)
Q Consensus 244 -gr~v~~G~~~ev~~ 257 (287)
|++++.|++.++..
T Consensus 244 ~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 244 RGKLVEFSPTEQMFG 258 (274)
T ss_pred CceEEEeCCHHHHHh
Confidence 56778888888753
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-30 Score=249.63 Aligned_cols=192 Identities=14% Similarity=0.067 Sum_probs=149.8
Q ss_pred cCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---------C
Q 023126 54 KTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------P 123 (287)
Q Consensus 54 ~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---------~ 123 (287)
++++++.|+++.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 ~~nl~~~~~~~~il-----~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 1 MSNISKSFPGVKAL-----DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALE 72 (491)
T ss_pred CCceEEEeCCEEee-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHh
Confidence 35788899877777 888 9999999999999999999999999999999 9999999888542 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHh-cCC--CCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~--~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
..++|++|++..++ .+|+.+|+.+.... .+. ......+++.++++.++. ..++++.+||||||||+++|++++
T Consensus 73 ~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 73 NGISMVHQELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred CCEEEEeccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 35899999965333 38999998764321 111 111223456778888773 446778899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
.+|++|++|||+..||. .+++.+.++.+ ..|++|||++++.. |++ |++++.|+++++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999998 34444555432 24699999999876 444 788888877664
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-30 Score=224.77 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=135.7
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---ceeEEEeCCCCCCCcccCCccccHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPMDGFHLYLSQLDAMEDPK 148 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---~~i~~v~qd~~~~~~~~ltv~e~i~ 148 (287)
+++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.... ...+|++|++..++ .+|+.+|+.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~--~~tv~e~l~ 76 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQNYSLLP--WLTVRENIA 76 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecCcccCC--CCCHHHHHH
Confidence 456 8999999999999999999999999999999 99999998875432 22589999865443 379999998
Q ss_pred HHHHhc--CCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHH
Q 023126 149 EAHARR--GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKD 220 (287)
Q Consensus 149 ~~~~~~--~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~ 220 (287)
+....+ +.......+++.+.++.++. ..+.++.+|||||+||+++|++++.+|+++++|||+..||. .+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 753211 11112223456777887763 44677889999999999999999999999999999999998 44455
Q ss_pred HHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 221 VSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 221 l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
+.++.+ ..|++|||++++.. +++ |++++.|...++
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 555432 24699999998766 444 777777765443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-30 Score=219.44 Aligned_cols=173 Identities=13% Similarity=0.011 Sum_probs=136.8
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------C
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~ 123 (287)
++++++++.|+.+..+ +++ +++++|+++||+|+||||||||+++|+|+++ |++|+|.++|... .
T Consensus 1 l~i~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCERDGRALF-----SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEeCCceee-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhh
Confidence 3567889999877777 888 9999999999999999999999999999999 9999998887542 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..++|++|++...+ .+|+.+|+.+.... ...+++.++++.++. ..+.++.+||+||+||+++|++++.+|
T Consensus 73 ~~i~~~~q~~~~~~--~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 73 RGLLYLGHAPGIKT--TLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred hheEEeccccccCC--CcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 35899998865333 37999998764211 134566777777763 346778899999999999999999999
Q ss_pred cEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++++|||+..||.. +++.+.++.. ..|++|||......
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 999999999999983 3444444322 24689999876644
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-30 Score=218.99 Aligned_cols=174 Identities=13% Similarity=0.014 Sum_probs=137.6
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------C
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~ 123 (287)
++++++++.|+.+.++ +++ +.+.+|++++|+||||||||||+++|+|+++ |++|+|.++|... .
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRGERMLF-----EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEECCEEEE-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhh
Confidence 3567889999887777 888 9999999999999999999999999999999 9999999888542 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..++|++|+...++ .+|+.+|+.+.....+ ...+++.++++.++ ...+.++.+||+||+||+++|++++.+|
T Consensus 73 ~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 73 RNILYLGHLPGLKP--ELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred hheEEeccCccccc--CCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 35889998754332 3799999987654332 12345667777776 3456788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
+++++|+|+..||. .+++.+.++.+ ..|++||+.....
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 99999999999998 44455554422 2469999986543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-30 Score=227.17 Aligned_cols=199 Identities=14% Similarity=0.065 Sum_probs=153.1
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~ 120 (287)
+.++.++++++++.|+.+.++ +++ +++++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 12 ~~~~~l~~~~l~~~~~~~~vl-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~ 83 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGGYQAL-----KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPD 83 (265)
T ss_pred CCCceEEEEEEEEEECCeeee-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCc
Confidence 456789999999999877777 888 9999999999999999999999999999987 6 7899988764
Q ss_pred CC------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCC
Q 023126 121 KP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAP 181 (287)
Q Consensus 121 ~~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~ 181 (287)
.. ...++|++|++..+. .|+.+|+.+.....+.... ...+++.++++.++. ..+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~---~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 160 (265)
T PRK14252 84 NVNILSPEVDPIEVRMRISMVFQKPNPFP---KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAF 160 (265)
T ss_pred cccccccccCHHHHhccEEEEccCCcCCc---chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcc
Confidence 21 235899999965442 3899999876543333221 123455566665542 2356778
Q ss_pred CCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hcccc
Q 023126 182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 182 ~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
.||+||+||+++|++++.+|+++++|+++..||.. +.+.+.++.. ..+++||+++++.. |++ |++++
T Consensus 161 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999983 3344444432 34699999999876 554 78888
Q ss_pred CCChHHHH
Q 023126 249 TGKPPDVA 256 (287)
Q Consensus 249 ~G~~~ev~ 256 (287)
.|+.+++.
T Consensus 241 ~g~~~~~~ 248 (265)
T PRK14252 241 FGATDTIF 248 (265)
T ss_pred eCCHHHHH
Confidence 88887764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-30 Score=250.39 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=150.0
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
|+++++++++.|+++.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~il-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKAL-----DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTT 74 (501)
T ss_pred ceEEEeeeEEEECCEEEE-----eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHH
Confidence 578999999999887777 888 9999999999999999999999999999999 9999999887542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHH--hcCC-CCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~--~~~~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
+..++|++|++..++ .+|+.+|+.+... .++. ......+++.++++.++. ..++++.+||||||||++||
T Consensus 75 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 75 AALAAGVAIIYQELHLVP--EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred HHHhCCEEEEEechhccC--CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 235899999865333 4799999887432 1121 112224567788888874 34677889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
++++.+|+++++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |+++..+.
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999 34444444432 24699999999876 444 66665443
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-30 Score=224.80 Aligned_cols=173 Identities=15% Similarity=0.070 Sum_probs=132.1
Q ss_pred ccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------CceeEEEe
Q 023126 59 VQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLP 130 (287)
Q Consensus 59 ~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~~~i~~v~ 130 (287)
..|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.+++... ...++|++
T Consensus 29 ~~~~~~~il-----~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~ 100 (236)
T cd03267 29 RKYREVEAL-----KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVF 100 (236)
T ss_pred cccCCeeee-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEc
Confidence 455666666 888 9999999999999999999999999999999 9999999877532 23588987
Q ss_pred CCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcC
Q 023126 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (287)
Q Consensus 131 qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~ 208 (287)
++...++ +.+|+.+|+.+....++.......+++.++++.++ ...+.++..||+||+||+++|++++.+|+++++||
T Consensus 101 ~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 101 GQKTQLW-WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred CCccccC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4432222 24799999887655444322223345566777766 33467788999999999999999999999999999
Q ss_pred cccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 209 NYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+..||. .+.+.+.++.+ ..|++||+++++..
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHH
Confidence 9999999 34444554432 24699999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-30 Score=274.13 Aligned_cols=201 Identities=16% Similarity=0.143 Sum_probs=166.3
Q ss_pred CCCccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 48 AQPVFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
..+.++++++++.|+ ++.++ +++ +.+.+||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 925 ~~~~L~I~nLsK~y~~~~k~aL-----~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 925 LVPGVCVKNLVKIFEPSGRPAV-----DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIET 996 (2272)
T ss_pred CCceEEEEeEEEEecCCCceEE-----EeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcc
Confidence 456899999999995 45677 888 9999999999999999999999999999999 9999999988543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
++.++|++|++..++ .+|+.||+.+....++.+.....+++.++++.++. ..++++.+||||||||+++|+
T Consensus 997 ~~~~~r~~IG~~pQ~~~L~~--~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 997 NLDAVRQSLGMCPQHNILFH--HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred hHHHHhhcEEEEecCCcCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 245899999975443 48999999987766665444445567888888873 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|++.+++++++||++..+|+ .+|+.|+++.. .+|++||+++++.. |++ |++++.|++.++.+.
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999 56666666643 24699999999876 554 888899998887554
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-30 Score=226.42 Aligned_cols=198 Identities=13% Similarity=0.071 Sum_probs=154.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVK 121 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~ 121 (287)
+.+++.++.+.+.|+...++ +++ +.+.+|+++||+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~ 76 (261)
T PRK14263 5 APIVMDCKLDKIFYGNFMAV-----RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQD 76 (261)
T ss_pred CCceEEEEeEEEEeCCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEe
Confidence 34678889999999987777 888 9999999999999999999999999999997 7 79999988754
Q ss_pred C----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 122 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 122 ~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
. .+.++|++|++..+ . +|+.+|+.+.....+.. ....+++.++++.++. ..+.++..||+
T Consensus 77 i~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~ 152 (261)
T PRK14263 77 VYGKGVDPVVVRRYIGMVFQQPNPF-S--MSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSG 152 (261)
T ss_pred ccccccchHhhhhceEEEecCCccc-c--ccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH
Confidence 2 23489999997543 3 79999998765433321 2233466777777663 22356679999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HH--h----------h
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L----------K 244 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv--~----------g 244 (287)
||+||+++|+|++.+|+++++|+++..||. .+++.+.++.. ..|++||+++++.. |+ + |
T Consensus 153 G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G 232 (261)
T PRK14263 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTG 232 (261)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCc
Confidence 999999999999999999999999999999 44555555432 24689999998876 32 2 5
Q ss_pred ccccCCChHHHHH
Q 023126 245 RHISTGKPPDVAK 257 (287)
Q Consensus 245 r~v~~G~~~ev~~ 257 (287)
++++.|+++++..
T Consensus 233 ~i~~~g~~~~~~~ 245 (261)
T PRK14263 233 YLVEMGPTAQIFQ 245 (261)
T ss_pred eEEEeCCHHHHHh
Confidence 7778888777653
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-30 Score=222.64 Aligned_cols=177 Identities=16% Similarity=0.031 Sum_probs=139.4
Q ss_pred cccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 52 FGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
++++++++.|+. +.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 l~~~~l~~~~~~~~~~~~il-----~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~ 73 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVL-----FDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGAS 73 (220)
T ss_pred EEEEEEEEEccCCCcceeEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcC
Confidence 567888888864 4566 888 9999999999999999999999999999999 9999999887542
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..++ .+|+.+|+.+....++ .......+++.++++.++. ..+..+.+||+||+||++
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~--~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~ 151 (220)
T TIGR02982 74 EKELVQLRRNIGYIFQAHNLLG--FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVA 151 (220)
T ss_pred HhHHHHHHhheEEEcCChhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH
Confidence 245899999975443 3799999987654332 2222234467788888773 346678899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTA 238 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~ 238 (287)
+|++++.+|+++++|+++..+|.. +++.+.++.+ ..|++||+++..
T Consensus 152 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL 205 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999999999999999993 4455555432 246999999853
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-29 Score=208.75 Aligned_cols=206 Identities=13% Similarity=0.117 Sum_probs=160.5
Q ss_pred CCccccCcccccccccchhhh-----hhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 49 QPVFGKTRSLVQNKTSLKVLC-----SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
.++++++++++.|..+..++. +....+|++++|+.+||+|.||||||||+|+|+|+++ |++|+|.+++...
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 467888999999987765533 3333349999999999999999999999999999999 9999999998653
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhc---cCCCCCCCCCCcccCCch
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv 191 (287)
.+.+-+++||+...+++.+.+.+.+...++... .......+++.+.|..+| +..+.++..||-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 355899999988777777777666666554432 222334557778888888 456678889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChhhHHHHH----HhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVS----SMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~~~~~l~----~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++|+|++.+|+++|.|+.+..||-.+.-.+. ++.+. -|||+.++..+.. .++ |.+++.|.+.++.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 9999999999999999999999974333333 33222 3699999999887 444 8999999999976
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 239 a 239 (267)
T COG4167 239 A 239 (267)
T ss_pred c
Confidence 4
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-30 Score=233.87 Aligned_cols=203 Identities=11% Similarity=0.071 Sum_probs=154.5
Q ss_pred CCCCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCC
Q 023126 47 NAQPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK 121 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~ 121 (287)
+...+++++++++.|.. ..++ +++ ++|.+|+++||+|+||||||||+++|+|+++.. .|++|+|.++|.+
T Consensus 76 ~~~~~i~~~nls~~y~~~~~~~L-----~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~ 150 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNRTKHVL-----HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN 150 (329)
T ss_pred CcCceEEEEeeEEEecCCCceee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 44468899999999953 4566 888 999999999999999999999999999998510 1469999988765
Q ss_pred C----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch-HHHHHHHHHHhcc------CCCCCCCCCC
Q 023126 122 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRN------QGSVYAPSFD 184 (287)
Q Consensus 122 ~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~-~~~~~~~l~~l~~------~~~~~~~~lS 184 (287)
. +..++|++|++..+ + .|+++|+.+.....+...... .+.+.+.++.++. ..+.+...||
T Consensus 151 i~~~~~~~~~lr~~i~~v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 151 TRSKKISSLELRTRIGMVFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALS 227 (329)
T ss_pred ccccccchHhhhccEEEEecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCC
Confidence 3 24599999997644 3 699999987643322221111 1224555555542 3456788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|||+||++||+|++.+++++++|+++..+|.. +.+.++++.+ ..|++||+++.+.. |++ |++++.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999993 4444444443 34699999999876 555 89999999
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
+.++..
T Consensus 308 ~~~l~~ 313 (329)
T PRK14257 308 TKTIFI 313 (329)
T ss_pred HHHHhc
Confidence 999853
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-30 Score=249.61 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=152.7
Q ss_pred CCCccccCccccccc---ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccccCCCCC
Q 023126 48 AQPVFGKTRSLVQNK---TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-~~G~i~~~~~~~ 122 (287)
..++++++++++.|+ ...++ +++ +++++|+++||+|+||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 256 ~~~~l~~~~l~~~~~~~~~~~vl-----~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~ 327 (506)
T PRK13549 256 GEVILEVRNLTAWDPVNPHIKRV-----DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPV 327 (506)
T ss_pred CCceEEEecCccccccccccccc-----cceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEEC
Confidence 356899999999994 34456 888 9999999999999999999999999999997 6 899999887432
Q ss_pred ---------CceeEEEeCCCC-CCCcccCCccccHHHHHH--hcCC---CCCchHHHHHHHHHHhcc---CCCCCCCCCC
Q 023126 123 ---------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHA--RRGA---PWTFNPLLLLNCLKNLRN---QGSVYAPSFD 184 (287)
Q Consensus 123 ---------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~--~~~~---~~~~~~~~~~~~l~~l~~---~~~~~~~~lS 184 (287)
...++|++|++. ....+.+|+.+|+.+... ..+. ......+++.++++.++. ..++++.+||
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 407 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLS 407 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCC
Confidence 124899999853 112234899999986532 1111 112233567788888874 3467888999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||||||++||++++.+|++|++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |+++..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999 34444444433 24699999999876 444 7888777
Q ss_pred ChHHH
Q 023126 251 KPPDV 255 (287)
Q Consensus 251 ~~~ev 255 (287)
+++++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 76665
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=205.87 Aligned_cols=203 Identities=15% Similarity=0.119 Sum_probs=157.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
..+|++.+.++++.||.+... +++ |.+.|||++||+|+||||||||+++|++.+. |++|+|.+.....
T Consensus 2 ~~~PLL~V~~lsk~Yg~~~gc-----~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~ 73 (258)
T COG4107 2 MDKPLLSVSGLSKLYGPGKGC-----RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPR 73 (258)
T ss_pred CCCcceeehhhhhhhCCCcCc-----cccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCch
Confidence 467899999999999999999 999 9999999999999999999999999999999 9999986543211
Q ss_pred --------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhcc---CCCCCCCCCC
Q 023126 123 --------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN---QGSVYAPSFD 184 (287)
Q Consensus 123 --------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~---~~~~~~~~lS 184 (287)
+..-|+++|++..-..-..+...|+-......|. ......+.+.++|++++. ..+..+.++|
T Consensus 74 dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFS 153 (258)
T COG4107 74 DLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFS 153 (258)
T ss_pred hHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccc
Confidence 1126899999765444334455566543322221 112345567788888884 4456788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcC--------ceEEEeCHHHHHH---HHh----hccccC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~--------~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|||+||+.||+.+...||++++|+++-.||-.+...+.++... .+++|||+.++.- |.+ |++++.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999666666655542 3699999999865 444 789999
Q ss_pred CChHHHHH
Q 023126 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~ev~~ 257 (287)
|-++.+..
T Consensus 234 GLTDrvLD 241 (258)
T COG4107 234 GLTDRVLD 241 (258)
T ss_pred cccccccc
Confidence 98877654
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=229.40 Aligned_cols=203 Identities=11% Similarity=0.078 Sum_probs=154.2
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~- 122 (287)
.+.+++.++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++.. +|++|+|.++|...
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL-----~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHAL-----KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCCceEEEEEEEEEeCCeeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 566789999999999987777 888 999999999999999999999999999998500 14899999887432
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC------------CCC-CchHHHHHHHHHHhcc------
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRN------ 174 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~------------~~~-~~~~~~~~~~l~~l~~------ 174 (287)
...++|++|+... ++ .|+.+|+.+.....+ ... ....+++.++++.++.
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 192 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND 192 (305)
T ss_pred cccccHHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH
Confidence 2358999999653 33 499999987543221 110 1123445666666653
Q ss_pred CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HH-h-
Q 023126 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV-L- 243 (287)
Q Consensus 175 ~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv-~- 243 (287)
..+.++.+|||||+||++||++++.+|++|++|+++..||. .+++.|+++.+ ..|++||+++.+.. |+ +
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 23567889999999999999999999999999999999999 34444544433 24699999999876 53 2
Q ss_pred ---hccccCCChHHHHH
Q 023126 244 ---KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ---gr~v~~G~~~ev~~ 257 (287)
|++++.|+++++..
T Consensus 273 l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 273 LTGGELVEYDDTDKIFE 289 (305)
T ss_pred ecCCEEEEeCCHHHHHh
Confidence 78888888877643
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-30 Score=225.86 Aligned_cols=196 Identities=11% Similarity=0.026 Sum_probs=147.3
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++. ..|++|+|.++|...
T Consensus 7 ~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 7 SVKNLNLWYGSKQIL-----FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EeeeEEEEECCeeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 467888888876667 888 99999999999999999999999999999740 013699998877432
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC--CchHHHHHHHHHHhccC------CCCCCCCCCcccCCch
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~--~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~~qrv 191 (287)
+..++|++|++..++ .++.+|+.+.....+... ....+.+.++++.++.. .+..+..||+||+||+
T Consensus 82 ~~~~~~i~~v~q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HHHhhhEEEEecCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 235899999965332 388999987643333211 11233456777777642 3457789999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++|++++.+++++++|+++..||. .+.+.+.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999998 34444444432 24699999998875 544 7888888877764
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-30 Score=221.66 Aligned_cols=179 Identities=19% Similarity=0.220 Sum_probs=137.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---CceeEEEeCCCCCCCcccCCccccHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~ 152 (287)
+++++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+. ...++|++|++...+...+|+.+|+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4689999999999999999999999999999 9999999998653 345899999975433223688888876422
Q ss_pred hc-C---CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHH
Q 023126 153 RR-G---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVS 222 (287)
Q Consensus 153 ~~-~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~ 222 (287)
.. + .+.....+++.++++.++. ..+.++.+||+||+||++++++++.+|+++++|+|+..||. .+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11 1 1112234567778887773 34667889999999999999999999999999999999998 3444555
Q ss_pred Hhhc---CceEEEeCHHHHHH---HHh---hccccCCChHHHHH
Q 023126 223 SMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAK 257 (287)
Q Consensus 223 ~~~~---~~i~vtHd~~~~~~---rv~---gr~v~~G~~~ev~~ 257 (287)
++.+ ..|++|||++++.. +++ |++++.|+++++..
T Consensus 158 ~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 158 ELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHHhcC
Confidence 4433 24799999998766 433 78888888777643
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-30 Score=222.68 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=136.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~ 130 (287)
+.++++++.|+...++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|.... ...
T Consensus 23 l~~~~~~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~----~~~ 90 (224)
T cd03220 23 LGILGRKGEVGEFWAL-----KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSS----LLG 90 (224)
T ss_pred hhhhhhhhhcCCeEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEch----hhc
Confidence 7788999999998888 999 9999999999999999999999999999999 99999999875321 111
Q ss_pred CCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcC
Q 023126 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (287)
Q Consensus 131 qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~ 208 (287)
.. ..+ .+.+|+.+|+.+....++.......+++.++++.++ ...+.++.+||+||+||+++|++++.+|+++++|+
T Consensus 91 ~~-~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 91 LG-GGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cc-ccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11 112 234799999987655443322222345566776666 34467788999999999999999999999999999
Q ss_pred cccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH
Q 023126 209 NYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
|+..||. .+++.+.+.... .|++||+++++..
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999998 345555554332 4699999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-30 Score=227.74 Aligned_cols=193 Identities=15% Similarity=0.149 Sum_probs=141.8
Q ss_pred ccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+. ..++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~~l~~~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 2 TFEHVRFRYKPDGPVIL-----DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAW 73 (237)
T ss_pred EEEEEEEecCCCCccce-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHH
Confidence 56788888864 3455 888 9999999999999999999999999999999 9999999988542
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHH-----HHHHHHHHhc----cCCCCCCCCCCcccCCchh
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLR----NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~l~----~~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++.. ++ .|+.+|+.+... ........+ .+.+.++.+. ...+.++.+|||||+||++
T Consensus 74 ~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~ 148 (237)
T cd03252 74 LRRQVGVVLQENVL-FN--RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIA 148 (237)
T ss_pred HhhcEEEEcCCchh-cc--chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHH
Confidence 2358999999653 33 589999865321 111000000 1122233331 1234577899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~~ 258 (287)
+|++++.+|+++++|+++..||. .+++.+.++.. ..|++|||++++.. +++ |++++.|+++++..+
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999 34445554433 24689999999854 443 788888888876544
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=217.23 Aligned_cols=173 Identities=13% Similarity=-0.009 Sum_probs=137.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------- 123 (287)
+.++++++.|+++.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|....
T Consensus 2 l~~~~l~~~~~~~~il-----~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYHDQPLL-----QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeCCeeEE-----eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 5678999999877777 888 9999999999999999999999999999999 99999999886432
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+....+ .+|+.+|+.+..... .....+.++++.++. ..+.++..||+||+||+++|++++.+|
T Consensus 74 ~~i~~~~q~~~~~~--~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 74 KQLCFVGHRSGINP--YLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred hheEEeccccccCc--CCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 35899999855333 389999988753211 123456777777663 346677899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
+++++|+++..+|. .+++.+.++.+ ..|++||+.+.+.
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 99999999999999 34455554422 2468999988764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=235.35 Aligned_cols=182 Identities=14% Similarity=0.062 Sum_probs=150.8
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+++++.+++|.|++..+. +++ +++++|||.||+|+||||||||+++|.|+++ |++|+|+++|...
T Consensus 2 ~~~l~~~~itK~f~~~~An-----d~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 2 EPALEMRGITKRFPGVVAN-----DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred CceEEEeccEEEcCCEEec-----CceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCH
Confidence 4678999999999988888 999 9999999999999999999999999999999 9999999998653
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcC---CCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~---~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~i 193 (287)
+.-||+++|.....+ .+||.||+..+..... ...+...+++.++.++.+ ...+.++.+||-|+||||.|
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred HHHHHcCCcEEeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 233899999944433 3999999998754321 122334556677777777 45567889999999999999
Q ss_pred hhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
-.+|..++++||+|||+..|-+ ++++.++.+... +|||||-++++++
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 9999999999999999999987 566666666654 4799999999988
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-30 Score=248.29 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=150.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p--~~G~i~~~~~~~----- 122 (287)
+++++++++.|+.+.++ +++ +++++|+++||+||||||||||+++|+|+++ | ++|+|.++|...
T Consensus 1 ~l~i~~l~~~~~~~~il-----~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKAL-----DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred CEEEEeEEEEeCCeEee-----cceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCH
Confidence 36788999999877777 888 9999999999999999999999999999998 7 799999887532
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhc--C--CCCCchHHHHHHHHHHhccCC---CCCCCCCCcccCCch
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--~--~~~~~~~~~~~~~l~~l~~~~---~~~~~~lSgG~~qrv 191 (287)
...++|++|++..++ .+|+.+|+.+..... + .......+++.++++.++... ++++.+||||||||+
T Consensus 73 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVP--ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred HHHHhCCEEEEeeccccCC--CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 235899999965333 489999987754321 1 111122346677888887432 456889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
++|++++.+|+++++|||+..||.. +++.++++.+ .+|++|||++++.. +++ |+++..|+++++
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999993 4444444433 24699999999876 444 777777766543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=246.22 Aligned_cols=195 Identities=16% Similarity=0.022 Sum_probs=148.7
Q ss_pred CCccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 49 QPVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 49 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
+.+++++++++.|+ .+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.+++. ..+
T Consensus 2 ~~~i~~~nls~~~~~~~~il-----~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i 70 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKEIL-----KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPG---IKV 70 (552)
T ss_pred cEEEEEeeEEEecCCCCeee-----cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEE
Confidence 56889999999998 66677 888 9999999999999999999999999999999 99999988652 459
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHh--------------cCCCCCc----------------------hHHHHHHHHH
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLK 170 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~ 170 (287)
+|++|++..++ .+|+.+|+.+.... +..+... ...++.++++
T Consensus 71 ~~v~Q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 71 GYLPQEPQLDP--TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EEEeccCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 99999975433 38999999864321 0111110 0123445555
Q ss_pred Hhcc-CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHH----HhhcCceEEEeCHHHHHH---HH
Q 023126 171 NLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS----SMFDEKWFIEVDLDTAMQ---RV 242 (287)
Q Consensus 171 ~l~~-~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~----~~~~~~i~vtHd~~~~~~---rv 242 (287)
.++. ..+.++.+||||||||+++|++++.+|++|++|||+..||....+.+. +....+|++|||++.+.. ++
T Consensus 149 ~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 149 ALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred hCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 5553 246778899999999999999999999999999999999994444443 333345799999999876 44
Q ss_pred h----hccc-cCCChHHHH
Q 023126 243 L----KRHI-STGKPPDVA 256 (287)
Q Consensus 243 ~----gr~v-~~G~~~ev~ 256 (287)
+ |+++ ..|..+++.
T Consensus 229 ~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred EEEECCEEEEecCCHHHHH
Confidence 4 6755 567776643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=245.28 Aligned_cols=193 Identities=13% Similarity=0.045 Sum_probs=149.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEE
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 129 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v 129 (287)
+++++++++.|+++.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 1 ml~i~~ls~~~~~~~il-----~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~~ 69 (530)
T PRK15064 1 MLSTANITMQFGAKPLF-----ENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGKL 69 (530)
T ss_pred CEEEEEEEEEeCCcEeE-----eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEE
Confidence 36788999999887777 998 9999999999999999999999999999999 99999988763 348999
Q ss_pred eCCCCCCCcccCCccccHHHHHHh-----------cCCCC---------------------CchHHHHHHHHHHhccC--
Q 023126 130 PMDGFHLYLSQLDAMEDPKEAHAR-----------RGAPW---------------------TFNPLLLLNCLKNLRNQ-- 175 (287)
Q Consensus 130 ~qd~~~~~~~~ltv~e~i~~~~~~-----------~~~~~---------------------~~~~~~~~~~l~~l~~~-- 175 (287)
+|++..+. .+|+.+++.+.... .+.+. .....++.++++.++..
T Consensus 70 ~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 70 RQDQFAFE--EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred eccCCcCC--CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99865333 47999998753210 01000 01234566778888743
Q ss_pred -CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH---HHh----
Q 023126 176 -GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---- 243 (287)
Q Consensus 176 -~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~---- 243 (287)
.+.++.+|||||+||+++|++++.+|++|++|||+..||....+.+.++.. .+|++|||++.+.. +++
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeC
Confidence 245678999999999999999999999999999999999955544444432 34699999999876 554
Q ss_pred hccc-cCCChHHHH
Q 023126 244 KRHI-STGKPPDVA 256 (287)
Q Consensus 244 gr~v-~~G~~~ev~ 256 (287)
|+++ ..|.++++.
T Consensus 228 g~i~~~~g~~~~~~ 241 (530)
T PRK15064 228 GELRVYPGNYDEYM 241 (530)
T ss_pred CEEEEecCCHHHHH
Confidence 7774 678877654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-29 Score=224.78 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=151.2
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~~~ 122 (287)
.++++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 5 ~~~l~~~nl~~~~~~~~il-----~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i 76 (261)
T PRK14258 5 IPAIKVNNLSFYYDTQKIL-----EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNI 76 (261)
T ss_pred cceEEEeeEEEEeCCeeEe-----eceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEh
Confidence 4578999999999877666 888 9999999999999999999999999999998 85 78887766432
Q ss_pred ----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 123 ----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
...++|++|+... +. .|+.+|+.+.....+. +.....+++.++++.++. ..+.++.+||+
T Consensus 77 ~~~~~~~~~~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 153 (261)
T PRK14258 77 YERRVNLNRLRRQVSMVHPKPNL-FP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG 153 (261)
T ss_pred hccccchHHhhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence 2348999998653 33 6999999875443332 211223455667777653 24567789999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhh---c-CceEEEeCHHHHHH---HHh---------hc
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL---------KR 245 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~---~-~~i~vtHd~~~~~~---rv~---------gr 245 (287)
||+||+++|++++.+|+++++|+|+..+|.. +++.+.++. . ..|++|||++++.. |++ |+
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~ 233 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQ 233 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCce
Confidence 9999999999999999999999999999993 444455432 1 24689999999876 332 56
Q ss_pred cccCCChHHHHH
Q 023126 246 HISTGKPPDVAK 257 (287)
Q Consensus 246 ~v~~G~~~ev~~ 257 (287)
++..|+++++..
T Consensus 234 i~~~~~~~~~~~ 245 (261)
T PRK14258 234 LVEFGLTKKIFN 245 (261)
T ss_pred EEEeCCHHHHHh
Confidence 777888888744
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-30 Score=225.60 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=142.2
Q ss_pred cccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+.+ .++ +++ +.+.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 i~~~~l~~~~~~~~~~~l-----~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVL-----RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeCCCCccce-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHH
Confidence 3567888888765 566 888 9999999999999999999999999999999 9999999887532
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHH------HHHHHHHHhc----cCCCCCCCCCCcccCCc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL------LLLNCLKNLR----NQGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~------~~~~~l~~l~----~~~~~~~~~lSgG~~qr 190 (287)
.+.++|++|++..+ . .|+.+|+.+..... . ..... .+.+.++.+. ...+.++..||+||+||
T Consensus 73 ~~~~~i~~~~q~~~~~-~--~tv~enl~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 73 SLRRQIGLVSQDVFLF-N--DTVAENIAYGRPGA--T-REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HHHhhEEEeCCCCeec-c--ccHHHHhhccCCCC--C-HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 23489999996543 2 58999886542211 0 00111 1223333331 22356678999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH--HHh----hccccCCChHHHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~~ 258 (287)
+++|++++.+|+++++|+|+..||. .+++.+.++.+. .|++||+++.+.. +++ |++++.|+++++...
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999998 344444444332 4689999999865 443 777778877776443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=215.43 Aligned_cols=173 Identities=11% Similarity=0.030 Sum_probs=134.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----cee
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----DVA 126 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----~~i 126 (287)
++++++++.|+.+... + + +.+++|+++||+|+||||||||+++|+|+++ |++|++.++|.+.. ..+
T Consensus 2 l~~~~l~~~~~~~~l~-----~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIEQKNLF-----D-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEECCcEEE-----E-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 5678889999765544 6 7 9999999999999999999999999999999 99999999886532 347
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|+....+ .+|+.+|+.+....++ ..+.+.++++.++ ...++.+..||+||+||++++++++.+|+++
T Consensus 73 ~~~~~~~~~~~--~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 73 TYIGHNLGLKL--EMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred EeccCCcCCCc--cCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89998754333 3799999987543332 2345566666665 3356778899999999999999999999999
Q ss_pred EEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++|+++..+|.. +++.+++..+ ..+++||+++.+..
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 999999999983 3344432222 24689999987643
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=215.74 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=133.9
Q ss_pred CCCCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
+.+..++++++++.|+. ..++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~l-----~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~ 73 (207)
T cd03369 2 PEHGEIEVENLSVRYAPDLPPVL-----KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDIS 73 (207)
T ss_pred CCCCeEEEEEEEEEeCCCCcccc-----cCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhH
Confidence 34556888999999975 3455 888 9999999999999999999999999999999 9999999887542
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhh
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++.. +. .|+.+|+.+.. ....+.+.+.++ .+.++..||+||+||+++|+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~-~~--~tv~~~l~~~~-------~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~lar 138 (207)
T cd03369 74 TIPLEDLRSSLTIIPQDPTL-FS--GTIRSNLDPFD-------EYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLAR 138 (207)
T ss_pred HCCHHHHHhhEEEEecCCcc-cC--ccHHHHhcccC-------CCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHH
Confidence 2459999999753 33 48888885321 112333444443 45678899999999999999
Q ss_pred hhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
+++.+|+++++|+++..+|.. +++.++++.. ..|++||+++.+..
T Consensus 139 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 139 ALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 999999999999999999994 4445554432 24699999999865
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=221.79 Aligned_cols=198 Identities=12% Similarity=0.071 Sum_probs=149.6
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~----- 122 (287)
+++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|+++. ..|++|+|.++|...
T Consensus 3 ~l~~~~v~~~~~~~~~l-----~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFDDAHIL-----KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeCCeEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 46788999999877777 888 99999999999999999999999999998631 013899999888542
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCcccCCc
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~~qr 190 (287)
...++|++|++..+ . .|+.+|+.+....++... ....+++.+.++.++. ..+.++..||+||+||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPF-P--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQR 154 (250)
T ss_pred cHHHHhhheEEEecCCccC-c--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHH
Confidence 23489999996533 3 489999987644333221 1123445666666542 2356788999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+++|++++.+|+++++|+++..+|.. +.+.+.++.. ..|++||+++++.. +++ |++++.|++.++.
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999993 3444444432 24689999999887 332 7888888888764
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=220.06 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=138.4
Q ss_pred cccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 52 FGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++++++++.|+. +.++ +++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 l~~~~l~~~~~~~~~~l-----~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 3 IEFENVNFSYDEKKPVL-----KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKS 74 (229)
T ss_pred EEEEEEEEecCCCCccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHH
Confidence 567889999974 4566 888 9999999999999999999999999999999 9999999887542
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc-------------cCCCCCCCCCCcccC
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHGVG 188 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~lSgG~~ 188 (287)
...++|++|++.. +. .|+.+|+.+.... .....+.+.++.++ ...+..+.+||+||+
T Consensus 75 ~~~~i~~~~q~~~~-~~--~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 145 (229)
T cd03254 75 LRSMIGVVLQDTFL-FS--GTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER 145 (229)
T ss_pred HhhhEEEecCCchh-hh--hHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence 2458999999643 32 3888887653211 11122222222211 122456789999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
||+++|++++.+|+++++|+|+..||. .+++.+.++.. ..|++||+++.+.. +++ |++++.|+.+++.
T Consensus 146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999998 34444444432 24699999998754 333 6777777666554
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=243.63 Aligned_cols=190 Identities=10% Similarity=-0.011 Sum_probs=147.5
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.+++...
T Consensus 3 ~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLSDTKTL-----QLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcCCeeec-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHH
Confidence 58899999999877677 888 9999999999999999999999999999999 9999998766432
Q ss_pred -CceeEEEeCCCCCC-Cc-----ccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhh
Q 023126 123 -PDVATVLPMDGFHL-YL-----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 123 -~~~i~~v~qd~~~~-~~-----~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~i 193 (287)
...++|++|++... .. ..+++.+++... ....+++.++++.++. ..++++.+||||||||++|
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHH
Confidence 12378999975321 11 124555544321 1234567788888873 4577889999999999999
Q ss_pred hhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|++++.+|+++++|||+..||. .+++.+.++.+ ..|++|||++.+.. +++ |+++..|+++++.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999 34455555432 24699999999876 444 7888888877754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=217.47 Aligned_cols=183 Identities=15% Similarity=0.104 Sum_probs=136.1
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|.. +.++ +++ +++++|++++|+||||||||||+++|+|+++..-|++|+|.++|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARIL-----NDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77 (226)
T ss_pred cceeecceeeeecCccccccc-----cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChH
Confidence 5667888888864 4566 888 99999999999999999999999999999851004899998887542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC---CCchHHHHHH-HHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLN-CLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~---~~~~~~~~~~-~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
...++|++|++..++ .+|+.+|+.+........ ......++.+ .++.++. ..+..+..||+||+||+++|
T Consensus 78 ~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 155 (226)
T cd03234 78 QFQKCVAYVRQDDILLP--GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIA 155 (226)
T ss_pred HhcccEEEeCCCCccCc--CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHH
Confidence 345899999965443 479999998764433211 1111223334 6666663 34567889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCH-HHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL-DTAMQ 240 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~-~~~~~ 240 (287)
++++.+|+++++|+++..+|. .+++.+.++.+ ..+++||++ +++..
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~ 209 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFR 209 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH
Confidence 999999999999999999998 44455554432 246899998 45554
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=218.68 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=129.1
Q ss_pred cccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 l~~~~l~~~~~~~~~~~l-----~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03245 3 IEFRNVSFSYPNQEIPAL-----DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPA 74 (220)
T ss_pred EEEEEEEEEcCCCCcccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHH
Confidence 467888898875 4566 888 9999999999999999999999999999999 9999999887542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCC-----------CCCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGS-----------VYAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~-----------~~~~~lSgG~ 187 (287)
...++|++|++..+ . .|+.+|+.+... . .....+.+.++.++. ..+ ..+.+|||||
T Consensus 75 ~~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~ 145 (220)
T cd03245 75 DLRRNIGYVPQDVTLF-Y--GTLRDNITLGAP----L--ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQ 145 (220)
T ss_pred HHHhhEEEeCCCCccc-c--chHHHHhhcCCC----C--CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHH
Confidence 23589999997543 2 488888764311 1 122334445544431 111 2346999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTA 238 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~ 238 (287)
+||+++|++++.+|+++++|+|+..||. .+++.+.++.. ..|++|||++..
T Consensus 146 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 202 (220)
T cd03245 146 RQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL 202 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 9999999999999999999999999999 44455555443 346899999975
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-29 Score=220.95 Aligned_cols=196 Identities=15% Similarity=0.058 Sum_probs=146.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCcccccCCCCCC--
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~--l~~~~p~~G~i~~~~~~~~-- 123 (287)
.++++++++++.|+.+.++ +++ +++++|+++||+|+||||||||+++|+|+ ++ |++|+|.++|....
T Consensus 5 ~~~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~ 76 (252)
T CHL00131 5 KPILEIKNLHASVNENEIL-----KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDL 76 (252)
T ss_pred CceEEEEeEEEEeCCEEee-----ecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccC
Confidence 3578999999999877677 888 99999999999999999999999999998 57 99999988875321
Q ss_pred ------c-eeEEEeCCCCCCCcccCCccccHHHHHHhc----CCCCC---chHHHHHHHHHHhccC---CCCCCC-CCCc
Q 023126 124 ------D-VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWT---FNPLLLLNCLKNLRNQ---GSVYAP-SFDH 185 (287)
Q Consensus 124 ------~-~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----~~~~~---~~~~~~~~~l~~l~~~---~~~~~~-~lSg 185 (287)
. .+++++|++..+. .+++.+++.+..... +.... ...+++.++++.++.. .+..+. .|||
T Consensus 77 ~~~~~~~~~~~~~~q~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 154 (252)
T CHL00131 77 EPEERAHLGIFLAFQYPIEIP--GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSG 154 (252)
T ss_pred ChhhhheeeEEEEeccccccc--cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCH
Confidence 1 3678899865333 367888876543211 11110 1124556777777643 356666 5999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH----HHh----hccccCC
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTG 250 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~----rv~----gr~v~~G 250 (287)
||+||+++|++++.+|+++++|+|+..||. .+++.+.++.. .+|++|||++.+.. +++ |++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999 34455555432 24699999998753 333 7888888
Q ss_pred ChHH
Q 023126 251 KPPD 254 (287)
Q Consensus 251 ~~~e 254 (287)
+++.
T Consensus 235 ~~~~ 238 (252)
T CHL00131 235 DAEL 238 (252)
T ss_pred Chhh
Confidence 7763
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-29 Score=251.14 Aligned_cols=189 Identities=16% Similarity=0.171 Sum_probs=150.5
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.+++++++++|.. ..++ +++ +++++|+.+||+|+||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL-----~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLIL-----DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDV 522 (686)
T ss_pred eEEEEEEEEEcCCCCccce-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCH
Confidence 5889999999953 4566 888 9999999999999999999999999999999 99999999997543
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCC----CCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~lSgG 186 (287)
+.++|++||++.+. -|++||+.++ .+ .+.+++.++++..+ .+.+.. -..||||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~---gTI~eNi~~~-----~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGG 592 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMS---GSIFENIAGG-----AP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592 (686)
T ss_pred HHHHhccEEEccCCccCc---ccHHHHHhcC-----CC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 45999999987654 4999999763 22 23344445554433 222322 3479999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcCceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
||||+++|+|+..+|+++++||++.-+|. .+.+.+.++..+.|+|||+++.+.. +++ |+++++|+.+++.
T Consensus 593 QrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999998 4445555553456799999998876 655 8999999998876
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
+
T Consensus 673 ~ 673 (686)
T TIGR03797 673 A 673 (686)
T ss_pred h
Confidence 4
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=221.34 Aligned_cols=188 Identities=17% Similarity=0.129 Sum_probs=141.2
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 123 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-------- 123 (287)
+++++++. ..+ +++ +.+++|++++|+|+||||||||+++|+|+++ + +|+|.++|....
T Consensus 2 ~~~~l~~~----~~l-----~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~-~G~i~~~g~~i~~~~~~~~~ 68 (248)
T PRK03695 2 QLNDVAVS----TRL-----GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---G-SGSIQFAGQPLEAWSAAELA 68 (248)
T ss_pred cccccchh----cee-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---C-CeEEEECCEecCcCCHHHHh
Confidence 45666664 244 777 9999999999999999999999999999875 5 899998885431
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhcc--
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL-- 199 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~-- 199 (287)
..++|++|++...+. +|+.+|+.+.... ........+++.++++.++. ..+.++..||+||+||+++|++++.
T Consensus 69 ~~i~~v~q~~~~~~~--~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~ 145 (248)
T PRK03695 69 RHRAYLSQQQTPPFA--MPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVW 145 (248)
T ss_pred hheEEecccCccCCC--ccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 248999998654443 7999998764221 11222234566778887773 3467888999999999999999986
Q ss_pred -----CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 200 -----QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 200 -----~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+++++++|+|+..||. .+.+.+.++.. ..|++||+++++.. +++ |++++.|+.+++.
T Consensus 146 ~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 146 PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred cccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6799999999999999 34444444432 24699999998766 443 7888888877763
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=244.16 Aligned_cols=194 Identities=15% Similarity=0.102 Sum_probs=146.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..++++++++++.|+ .++ +++ +.+++|+++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 262 ~~~~l~~~~l~~~~~--~~l-----~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 262 HETVFEVRNVTSRDR--KKV-----RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRS 331 (510)
T ss_pred CCcEEEEeCccccCC--Ccc-----cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCC
Confidence 345799999998764 245 888 9999999999999999999999999999999 9999999887432
Q ss_pred -----CceeEEEeCCC--CCCCcccCCccccHHHHHHhc--------CC-CCCchHHHHHHHHHHhcc---CCCCCCCCC
Q 023126 123 -----PDVATVLPMDG--FHLYLSQLDAMEDPKEAHARR--------GA-PWTFNPLLLLNCLKNLRN---QGSVYAPSF 183 (287)
Q Consensus 123 -----~~~i~~v~qd~--~~~~~~~ltv~e~i~~~~~~~--------~~-~~~~~~~~~~~~l~~l~~---~~~~~~~~l 183 (287)
...++|++|+. ..++ +.+|+.+|+.+....+ +. ......+++.++++.++. ..++++.+|
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 410 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITEL 410 (510)
T ss_pred HHHHHHCCcEEccCccccCCCc-CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccC
Confidence 13489999984 2233 3489999987643211 11 111123456778888774 246788899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|||||||++||++++.+|++|++|||+..||.. +++.+.++.. ..|++|||++.+.. |++ |++++.
T Consensus 411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999993 3444444332 24799999998876 444 677665
Q ss_pred CCh
Q 023126 250 GKP 252 (287)
Q Consensus 250 G~~ 252 (287)
++.
T Consensus 491 ~~~ 493 (510)
T PRK09700 491 LTN 493 (510)
T ss_pred ecC
Confidence 544
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=238.50 Aligned_cols=195 Identities=16% Similarity=0.163 Sum_probs=147.9
Q ss_pred CCccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc
Q 023126 49 QPVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 124 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~ 124 (287)
.+++.++++++.|+.. .++ +++ +.+.+|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL-----~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYAL-----NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-- 88 (549)
T ss_pred cceeEEEEEEEecCCCccceEE-----eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee--
Confidence 3467888998888773 455 888 9999999999999999999999999999999 9999999887531
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++.+... ..+.+|+.+|+.+.....+.......+++.++++.++. ..+.++..|||||+||+++|+|++.+|+
T Consensus 89 ---~i~~~~~--l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 89 ---LIAISSG--LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred ---eEEeccc--cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 2222222 22347999998875443333222223345667777663 4567888999999999999999999999
Q ss_pred EEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 203 VVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 203 ~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+|++|+|+..||.. +++.+.++.+ ..|++|||++.+.. +++ |++++.|+++++...
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999993 4455554432 24699999998876 444 888889998887654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=248.15 Aligned_cols=194 Identities=12% Similarity=0.066 Sum_probs=149.6
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
.+.++++++++++.|+++.++ +++ +.|.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 308 ~~~~~l~~~~l~~~y~~~~il-----~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~ 376 (638)
T PRK10636 308 LPNPLLKMEKVSAGYGDRIIL-----DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IK 376 (638)
T ss_pred CCCceEEEEeeEEEeCCeeee-----ccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EE
Confidence 567899999999999988777 898 9999999999999999999999999999999 99999988642 35
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++|++|+.........++.+++.. .........+.++|+.++. ..++++..||||||||++||++++.+|+
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~ 450 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR------LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN 450 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH------hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 899999742212222344443321 1112234567788888774 3467888999999999999999999999
Q ss_pred EEEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH---HHh----hccc-cCCChHHHHH
Q 023126 203 VVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~---rv~----gr~v-~~G~~~ev~~ 257 (287)
+|++|+|+..||.. +.+.|.++-..+|+||||++++.. |++ |+++ ..|..++...
T Consensus 451 lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 451 LLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999994 334444443345799999999876 444 7776 6788877643
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=246.01 Aligned_cols=192 Identities=13% Similarity=0.087 Sum_probs=151.2
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
-+++++++++|.+ +.++ +++ +++++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 341 ~i~~~~vsf~y~~~~~~il-----~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPAL-----RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTL 412 (582)
T ss_pred eEEEEEEEEecCCCCCccc-----cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCH
Confidence 5889999999965 4566 888 9999999999999999999999999999999 9999999998653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG 186 (287)
.+.++|++|+++.+. -|+++|+.++. +...+.+++.+.++..+ .+.+..+ ..||||
T Consensus 413 ~~~~~~i~~v~Q~~~lf~---~Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFN---DTIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred HHHHhhceEEccCceeec---chHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 245999999977554 48999997531 22233444444444433 2333333 469999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||+++|+++..+++++++||++..+|+ .+.+.+.++.. ..|+|||+++.+.. +++ |++++.|+.++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999998 44455555532 35799999988776 555 89999999998
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
+++.
T Consensus 565 l~~~ 568 (582)
T PRK11176 565 LLAQ 568 (582)
T ss_pred HHhC
Confidence 8654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-29 Score=242.70 Aligned_cols=197 Identities=14% Similarity=0.031 Sum_probs=151.3
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..+
T Consensus 319 ~~~~l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i 387 (552)
T TIGR03719 319 GDKVIEAENLSKGFGDKLLI-----DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKL 387 (552)
T ss_pred CCeEEEEeeEEEEECCeeee-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEE
Confidence 46789999999999887777 888 9999999999999999999999999999999 99999988542 258
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
+|++|+...++ +.+|+.+|+.+....++... ......++++.++.. .++++.+||||||||+++|++++.+|++
T Consensus 388 ~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l 464 (552)
T TIGR03719 388 AYVDQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV 464 (552)
T ss_pred EEEeCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 99999853233 34799999887543222211 122345677777742 4678889999999999999999999999
Q ss_pred EEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH---HHh-----hccc-cCCChHHHHHH
Q 023126 204 VIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 258 (287)
Q Consensus 204 li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~---rv~-----gr~v-~~G~~~ev~~~ 258 (287)
+++|||+..||.. +++.+.++...+|++|||++++.. |++ |+++ ..|..++..+.
T Consensus 465 llLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 465 LLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 9999999999994 444444443345799999999876 443 2444 44666554433
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-29 Score=242.85 Aligned_cols=197 Identities=13% Similarity=0.032 Sum_probs=151.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|+.+.++ +++ +.|.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..+
T Consensus 321 ~~~~l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i 389 (556)
T PRK11819 321 GDKVIEAENLSKSFGDRLLI-----DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKL 389 (556)
T ss_pred CCeEEEEEeEEEEECCeeee-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEE
Confidence 45689999999999988777 888 9999999999999999999999999999999 99999988542 258
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
+|++|+...++ +.+|+.+|+.+.....+... ......++++.++.. .++++.+|||||+||+++|++++.+|++
T Consensus 390 ~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 466 (556)
T PRK11819 390 AYVDQSRDALD-PNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV 466 (556)
T ss_pred EEEeCchhhcC-CCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999852222 34899999887543222211 122345677777742 4678889999999999999999999999
Q ss_pred EEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH---HHh-----hccc-cCCChHHHHHH
Q 023126 204 VIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 258 (287)
Q Consensus 204 li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~---rv~-----gr~v-~~G~~~ev~~~ 258 (287)
|++|||+..||.. +++.|.++...+|++|||++++.. |++ |++. ..|..++..++
T Consensus 467 llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 467 LLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999983 444454443345799999998876 443 2333 35666665443
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-29 Score=220.63 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=134.5
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|. +++++|+.... +.+|+.+|+.+..
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g~-----~~~~~~~~~~~--~~~tv~enl~~~~ 110 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNGE-----VSVIAISAGLS--GQLTGIENIEFKM 110 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCE-----EeEEecccCCC--CCCcHHHHHHHHH
Confidence 777 9999999999999999999999999999999 99999988774 45666664332 3479999987654
Q ss_pred HhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhh
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMF 225 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~ 225 (287)
...+.......+.+.++++.++ ...+.++.+||+||+||+++|++++.+|++|++|+|+..+|.. +++.+.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~ 190 (264)
T PRK13546 111 LCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK 190 (264)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 4333322222233445555544 4456678899999999999999999999999999999999983 444454443
Q ss_pred c---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 226 D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 226 ~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
. ..|++||+++.+.. +++ |++++.|+.+++...+
T Consensus 191 ~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 234 (264)
T PRK13546 191 EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234 (264)
T ss_pred HCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHh
Confidence 2 24699999998866 444 7888889888876543
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-29 Score=222.22 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=138.8
Q ss_pred ccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 53 GKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 53 ~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++.|+. +.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~i~~l~~~~~~~~~~~~l-----~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 2 EFKNVSFRYPSRPDVPIL-----KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLR 73 (238)
T ss_pred eEEEEEEecCCCCCccce-----eceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHH
Confidence 56788888864 3456 888 9999999999999999999999999999999 9999999888542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHH------HHHHHHHhc----cCCCCCCCCCCcccCCc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL------LLNCLKNLR----NQGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~------~~~~l~~l~----~~~~~~~~~lSgG~~qr 190 (287)
...++|++|++..+ . .|+.+|+.+..... . ...... +.+.+..+. ...+..+.+|||||+||
T Consensus 74 ~~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 74 WLRSQIGLVSQEPVLF-D--GTIAENIRYGKPDA--T-DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred HHHhhEEEECCchhhh-h--hhHHHHhhccCCCC--C-HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 23589999996533 2 58888886532111 0 001111 112222221 12345678999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+++|++++.+|+++++|+|+..||. .+++.++++.. ..|++||+++++.. +++ |++++.|+.+++..
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999998 44455554432 24689999998854 433 77777787666543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-29 Score=242.90 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=147.0
Q ss_pred CCccccCcccccc---cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccccCCCCC-
Q 023126 49 QPVFGKTRSLVQN---KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-~~G~i~~~~~~~- 122 (287)
.++++++++++.| +.+.++ +++ +.+.+|+++||+||||||||||+++|+|+++ | ++|+|.++|...
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRV-----DDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVD 326 (500)
T ss_pred CceEEEeCCccccccccccccc-----ccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECC
Confidence 4579999999998 344566 888 9999999999999999999999999999998 7 799999887432
Q ss_pred --------CceeEEEeCCCC--CCCcccCCccccHHHHHH-hc-C---CCCCchHHHHHHHHHHhccC---CCCCCCCCC
Q 023126 123 --------PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 184 (287)
Q Consensus 123 --------~~~i~~v~qd~~--~~~~~~ltv~e~i~~~~~-~~-~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS 184 (287)
+..++|++|+.. .++ +.+|+.+|+.+... .. . .......+++.++++.++.. .++++.+||
T Consensus 327 ~~~~~~~~~~~i~~v~q~~~~~~l~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 405 (500)
T TIGR02633 327 IRNPAQAIRAGIAMVPEDRKRHGIV-PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLS 405 (500)
T ss_pred CCCHHHHHhCCCEEcCcchhhCCcC-CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCC
Confidence 234899999952 222 24899999876432 11 1 11112234577888888742 467888999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||||||++||++++.+|++|++|||+..||.. +++.+.++.. .+|++|||++++.. |++ |++++.+
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 99999999999999999999999999999993 3344444433 24699999999876 443 6666544
Q ss_pred C
Q 023126 251 K 251 (287)
Q Consensus 251 ~ 251 (287)
+
T Consensus 486 ~ 486 (500)
T TIGR02633 486 V 486 (500)
T ss_pred c
Confidence 3
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-29 Score=250.19 Aligned_cols=191 Identities=13% Similarity=0.093 Sum_probs=150.3
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++|+. +.++ +++ +++++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL-----~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~ 547 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLI-----ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIP 547 (710)
T ss_pred CeEEEEEEEEecCCCCCCcc-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCC
Confidence 35889999999975 4566 888 9999999999999999999999999999999 9999999998653
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSg 185 (287)
++.++|++|+++.+. -|++||+.++ .+. .+.+++.++++..+ .+.+. .-..|||
T Consensus 548 ~~~lr~~i~~v~Q~~~lf~---gTi~eNi~l~-----~~~-~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 548 REVLANSVAMVDQDIFLFE---GTVRDNLTLW-----DPT-IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred HHHHHhheeEEecCChhhh---ccHHHHhhCC-----CCC-CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 346999999987554 5999999753 121 23344444444333 22232 2347999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||||+++|+|+..+|+++++||++.-||++ +.+.+.+.-.+.|+|||+++.+.. |++ |++++.|+.+++
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~L 698 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL 698 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999993 444454432345799999999877 655 899999999998
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
.+
T Consensus 699 l~ 700 (710)
T TIGR03796 699 WA 700 (710)
T ss_pred HH
Confidence 65
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-29 Score=206.71 Aligned_cols=197 Identities=16% Similarity=0.121 Sum_probs=157.6
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC-CCCC----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKPP---- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~-~~~~---- 123 (287)
+++.+++++++|++..++ +++ +++.+||.-+|||||||||||++..|.|..+ |+.|+++++| .+..
T Consensus 4 ~iL~~~~vsVsF~GF~Al-----n~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSFGGFKAL-----NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEEcceeee-----eeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCH
Confidence 678999999999999999 998 9999999999999999999999999999999 9999999988 3322
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhc--------CCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccC
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVG 188 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--------~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~ 188 (287)
.-|+--||-+..+.. +||++|+....... ........+++.+.|..++ +..+.....||.|||
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~--ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFEN--LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred HHHHHhccCccccCCeehhh--ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 126667888765554 89999998754322 1122345568888988877 455667779999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
|++.|++.++..|++|++|+|+..+-+ ..-+.+..+... +++|.|||+++.. ++. |.+.+.|+.+++
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHh
Confidence 999999999999999999999998865 333445555443 4689999999987 332 889999998887
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
-
T Consensus 234 ~ 234 (249)
T COG4674 234 Q 234 (249)
T ss_pred h
Confidence 4
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-29 Score=241.16 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=147.5
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++ ..+ +++ +.+.+|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 255 ~~~l~~~~l~~-----~~l-----~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 255 EVRLKVDNLSG-----PGV-----NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred CcEEEEeCccc-----CCc-----ccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 45788888874 234 788 9999999999999999999999999999999 9999999887432
Q ss_pred ----CceeEEEeCCCC--CCCcccCCccccHHHHHH-hc----C-CCCCchHHHHHHHHHHhcc---CCCCCCCCCCccc
Q 023126 123 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGV 187 (287)
Q Consensus 123 ----~~~i~~v~qd~~--~~~~~~ltv~e~i~~~~~-~~----~-~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~ 187 (287)
+..++|++|++. .++ +.+|+.+|+.+... .. + .......+++.++++.++. ..++++.+|||||
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 400 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLV-LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGN 400 (501)
T ss_pred HHHHHCCCEEecCccccCCCc-CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHH
Confidence 134899999963 222 24799999876432 11 1 1111223457788888774 3567888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|||+++|++++.+|++|++|||+..||. .+++.++++.. ..|++|||++++.. |++ |+++..|+++
T Consensus 401 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 401 QQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999 44555555543 34799999999876 444 7777777766
Q ss_pred HH
Q 023126 254 DV 255 (287)
Q Consensus 254 ev 255 (287)
++
T Consensus 481 ~~ 482 (501)
T PRK10762 481 QA 482 (501)
T ss_pred cC
Confidence 65
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-29 Score=241.05 Aligned_cols=200 Identities=15% Similarity=0.139 Sum_probs=151.8
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
.+-.++++|+++.|..|.-+ -+.+++ ++|+|||++||+||||+||||++++|..+|. |++|+|.++|.+.+
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~--~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~ 536 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDV--PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDIN 536 (716)
T ss_pred ccceEEEEEeeeecCCCCCc--hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcC
Confidence 44568888999999877432 122888 9999999999999999999999999999999 99999999998753
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHH------HHHHHHhccCCCC----CCCCCCcccC
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL------LNCLKNLRNQGSV----YAPSFDHGVG 188 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~------~~~l~~l~~~~~~----~~~~lSgG~~ 188 (287)
+.|+++.|+|..+. -|+.|||.++... ...++...+ .+.+..+.++-+. +-.+||||||
T Consensus 537 ~~~lr~~Ig~V~QEPvLFs---~sI~eNI~YG~~~---~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQK 610 (716)
T KOG0058|consen 537 HKYLRRKIGLVGQEPVLFS---GSIRENIAYGLDN---ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQK 610 (716)
T ss_pred HHHHHHHeeeeeccceeec---ccHHHHHhcCCCC---CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHH
Confidence 45999999987554 5999999876441 111122211 1223333333333 3348999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChhh----HHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~~----~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
||++||+||+.+|++||+||-+..||.+- .+.+.+..+ ++++|.|.+..+.. +++ |++++.|+-+|++
T Consensus 611 QRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 611 QRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELL 690 (716)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHh
Confidence 99999999999999999999999999733 333333332 35789999999988 444 8999999988887
Q ss_pred HH
Q 023126 257 KW 258 (287)
Q Consensus 257 ~~ 258 (287)
..
T Consensus 691 ~~ 692 (716)
T KOG0058|consen 691 SK 692 (716)
T ss_pred hC
Confidence 54
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-29 Score=220.21 Aligned_cols=191 Identities=13% Similarity=0.119 Sum_probs=139.0
Q ss_pred ccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 53 GKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 53 ~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
+++++++.|+ .+..+ +++ +.+.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~l~~~~~~~~~~l-----~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 2 EFENVTFAYDPGRPVL-----KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSL 73 (236)
T ss_pred EEEEEEEEeCCCCcee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHH
Confidence 5678888885 45566 888 9999999999999999999999999999999 9999999987542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHH------HHHHHHHhc----cCCCCCCCCCCcccCCchh
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL------LLNCLKNLR----NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~------~~~~l~~l~----~~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..+ + .|+.+|+.+.... .. ...... +.+.+..+. ...+.++..||+||+||++
T Consensus 74 ~~~i~~~~q~~~~~-~--~tv~~nl~~~~~~--~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~ 147 (236)
T cd03253 74 RRAIGVVPQDTVLF-N--DTIGYNIRYGRPD--AT-DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVA 147 (236)
T ss_pred HhhEEEECCCChhh-c--chHHHHHhhcCCC--CC-HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 23489999996543 3 5888888654211 11 001111 112222221 1234457799999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|++++.+|+++++|+|+..||.. +++.+.++.+ ..|++||+.+.+.. +++ |++++.|+.+++..
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999984 3444444433 24689999999865 443 77777787766543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-28 Score=207.66 Aligned_cols=150 Identities=21% Similarity=0.224 Sum_probs=120.8
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.| ++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|++.++|.+.
T Consensus 2 ~~~l~~~~l~~~~----~l-----~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 2 EPVLEVRGLSVKG----AV-----RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSP 69 (182)
T ss_pred CcEEEEeccEEEe----ee-----cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCH
Confidence 4578899999987 45 888 9999999999999999999999999999999 9999999887442
Q ss_pred ----CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ----~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++. ....+.+|+.+|+.+... ||+||+||+++|+++
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------cCHHHHHHHHHHHHH
Confidence 235899999852 112223688888765321 999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.+|+++++|||+..+|. .+++.++++.. ..|++||+++++..
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999999 34444554432 24689999987765
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-28 Score=216.43 Aligned_cols=195 Identities=16% Similarity=0.022 Sum_probs=138.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~--l~~~~p~~G~i~~~~~~~~---- 123 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+ ++ |++|+|.++|....
T Consensus 1 ~i~~~nl~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 1 MLSIKDLHVSVEDKAIL-----RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSP 72 (248)
T ss_pred CeEEEEEEEEeCCeeee-----ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCH
Confidence 36788999999877777 888 99999999999999999999999999999 47 99999999886431
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHh---cCCCCC----chHHHHHHHHHHhcc---CCCCCCC-CCCccc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWT----FNPLLLLNCLKNLRN---QGSVYAP-SFDHGV 187 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~---~~~~~~----~~~~~~~~~l~~l~~---~~~~~~~-~lSgG~ 187 (287)
..++|++|++..++. ++..++....... +..... ...+.+.+.++.++. ..+..+. .|||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~ 150 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPG--VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 150 (248)
T ss_pred HHHhhcceEEEecCchhccc--hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence 348899998653332 3443333221111 100000 112344566666553 2344454 799999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH----HHh----hccccCCCh
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKP 252 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~----rv~----gr~v~~G~~ 252 (287)
+||+++|++++.+|+++++|+|+..||.. +.+.+.++.+ .+|++|||++.+.. +++ |+++..|++
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 99999999999999999999999999983 3333334432 24699999998764 232 677778877
Q ss_pred HHH
Q 023126 253 PDV 255 (287)
Q Consensus 253 ~ev 255 (287)
+.+
T Consensus 231 ~~~ 233 (248)
T PRK09580 231 TLV 233 (248)
T ss_pred HHH
Confidence 644
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-29 Score=221.28 Aligned_cols=187 Identities=16% Similarity=0.145 Sum_probs=143.7
Q ss_pred cccCcccccc--cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQN--KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~--~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.| +...++ +++ +.|++||++||+|+||||||||+++|+|++ +++|+|+++|.+.
T Consensus 3 i~~~nls~~~~~~~~~~l-----~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVL-----ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred EEEEEEEEEeCCCCCcce-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHH
Confidence 5678899999 445566 888 999999999999999999999999999998 4579999988543
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCC-----------CCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAP-----------SFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~-----------~lSgG~ 187 (287)
+..++|++|++..+. .|+++|+... +. ...+++.+.++.++. ..+..+. .||+||
T Consensus 74 ~lr~~i~~v~q~~~lf~---~tv~~nl~~~----~~---~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~ 143 (275)
T cd03289 74 KWRKAFGVIPQKVFIFS---GTFRKNLDPY----GK---WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGH 143 (275)
T ss_pred HHhhhEEEECCCcccch---hhHHHHhhhc----cC---CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHH
Confidence 235899999976442 4888888531 11 123455666666652 2233333 499999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
+||+++|+|++.+|+++++|+++..+|.. +.+.+++... .+|++||+++.+.. |++ |++++.|+++++
T Consensus 144 ~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l 223 (275)
T cd03289 144 KQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKL 223 (275)
T ss_pred HHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHH
Confidence 99999999999999999999999999983 4445554432 24699999998876 544 899999999997
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
..
T Consensus 224 ~~ 225 (275)
T cd03289 224 LN 225 (275)
T ss_pred hh
Confidence 65
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-28 Score=213.89 Aligned_cols=171 Identities=15% Similarity=0.161 Sum_probs=130.5
Q ss_pred cccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+. +.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 l~~~~l~~~~~~~~~~~l-----~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 74 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVL-----KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLH 74 (221)
T ss_pred EEEEEEEEecCCCCcccc-----cceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHH
Confidence 567888898864 3566 888 9999999999999999999999999999999 9999999887542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------------CCCCCCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSgG~ 187 (287)
.+.++|++|++.. +. .|+.+|+.+.. . ...+++.+.++.++. ..+..+..||+||
T Consensus 75 ~~~~~i~~~~q~~~l-~~--~tv~enl~~~~----~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~ 144 (221)
T cd03244 75 DLRSRISIIPQDPVL-FS--GTIRSNLDPFG----E---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQ 144 (221)
T ss_pred HHhhhEEEECCCCcc-cc--chHHHHhCcCC----C---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHH
Confidence 2458999999763 33 58888875321 1 122333444443331 1235677999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
+||+++|++++.+|+++++|+++..||.. +++.++++.. ..|++||+++.+..
T Consensus 145 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 99999999999999999999999999993 4444444432 24699999998865
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-29 Score=211.38 Aligned_cols=153 Identities=16% Similarity=0.114 Sum_probs=122.8
Q ss_pred CccccCcccccccc------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCcccccCCC
Q 023126 50 PVFGKTRSLVQNKT------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQV 120 (287)
Q Consensus 50 ~~~~~~~~~~~~~~------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~G~i~~~~~ 120 (287)
+.++++++++.|+. +.++ +++ +++++|++++|+||||||||||+++|+|++ + |++|+|.++|.
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l-----~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~ 73 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLL-----KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGR 73 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccce-----ecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCE
Confidence 34678899999975 4566 888 999999999999999999999999999999 9 99999998876
Q ss_pred CC-----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhh
Q 023126 121 KP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 121 ~~-----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
+. ...++|++|++..++ .+|+.+|+.+..... .||+||+||+++|+
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~--~~t~~~~i~~~~~~~---------------------------~LS~G~~qrv~lar 124 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHP--TLTVRETLMFAAKLR---------------------------GLSGGERKRVSIAL 124 (194)
T ss_pred eCchHhhhheEEEccCcccCCC--CCcHHHHHHHHHHhc---------------------------cCCHHHHHHHHHHH
Confidence 53 345899999865433 378888876532110 89999999999999
Q ss_pred hhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHH-HHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLD-TAM 239 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~-~~~ 239 (287)
+++.+|+++++|+++..||.. +++.+.++.+ ..|++|||++ .+.
T Consensus 125 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 176 (194)
T cd03213 125 ELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIF 176 (194)
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHH
Confidence 999999999999999999993 4444444432 2469999997 444
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-29 Score=213.61 Aligned_cols=196 Identities=13% Similarity=0.055 Sum_probs=152.2
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC----
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---- 121 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~---- 121 (287)
...++++++++++.|+++.++ +++ ++|++||.++|+||||||||||+++++|.++ |++|.+.+.|..
T Consensus 27 ~~~~li~l~~v~v~r~gk~iL-----~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~ 98 (257)
T COG1119 27 INEPLIELKNVSVRRNGKKIL-----GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKG 98 (257)
T ss_pred CCcceEEecceEEEECCEeec-----cccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCC
Confidence 566889999999999999999 999 9999999999999999999999999999999 999987665532
Q ss_pred -----CCceeEEEeCCCCCCCcccCCccccHHHHHH-hcCC----CCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCC
Q 023126 122 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA----PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGD 189 (287)
Q Consensus 122 -----~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~----~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~q 189 (287)
.++.||+++-.-...+....++++.+..+.. ..|. ..+.+.+++..+++.++ ...+++..+||-||||
T Consensus 99 ~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 99 ETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred cchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH
Confidence 2345888865533333334567776654321 1222 22345667788888888 4678899999999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC-----ceEEEeCHHHHHH---HHh----hccccCC
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~-----~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
|+.||+|++.+|++||+||++-.+|- .+.+.+.++... .+||||..+++.. +++ |+++..|
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 99999999999999999999999997 344445555443 5799999999877 322 6666655
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-29 Score=227.34 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=132.1
Q ss_pred EECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC
Q 023126 86 LAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 159 (287)
Q Consensus 86 IiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~ 159 (287)
|+||||||||||+++|+|+++ |++|+|.++|... .+.++|++|+...++ .+|+.+|+.+.....+....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP--HMTVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccC--CCcHHHHHHHHHhhcCCCHH
Confidence 689999999999999999999 9999999988543 235899999965433 48999999987654443322
Q ss_pred chHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----Cce
Q 023126 160 FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKW 229 (287)
Q Consensus 160 ~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i 229 (287)
...+++.++++.++. ..++++.+|||||+||+++|++++.+|+++++||++..||. .+++.+.++.. ..|
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 234567778887773 45778889999999999999999999999999999999999 34455555432 246
Q ss_pred EEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 230 FIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 230 ~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|||++++.. |++ |+++..|+++++..
T Consensus 156 ivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 156 FVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999876 554 88888899888754
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-29 Score=217.38 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=135.7
Q ss_pred CCCccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 48 AQPVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
..++++++++++.|+.+ .++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~ 79 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVL-----QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPIS 79 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchH
Confidence 34678899999999753 455 888 9999999999999999999999999999999 9999999988642
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC---CchHHHHHHHHHHh--c--cCCCCCCCCCCcccC
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNL--R--NQGSVYAPSFDHGVG 188 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~---~~~~~~~~~~l~~l--~--~~~~~~~~~lSgG~~ 188 (287)
...++|++|++.. +. .|+.+|+.+......... ......+.+.++.+ + ...+.++.+|||||+
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~ 156 (226)
T cd03248 80 QYEHKYLHSKVSLVGQEPVL-FA--RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK 156 (226)
T ss_pred HcCHHHHHhhEEEEecccHH-Hh--hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHH
Confidence 2358999999653 32 588888865322111000 00001134555555 3 234667889999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAM 239 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~ 239 (287)
||+++|++++.+|+++++|+|+..||.. +++.+.++.+ ..|++|||++++.
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 213 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 9999999999999999999999999983 3444444433 2469999999884
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-28 Score=204.40 Aligned_cols=144 Identities=12% Similarity=0.013 Sum_probs=118.1
Q ss_pred ccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe
Q 023126 53 GKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (287)
Q Consensus 53 ~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~ 130 (287)
+++++++.|+. +..+ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.+++. ..++|++
T Consensus 2 ~~~~~~~~~~~~~~~l-----~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~ 70 (166)
T cd03223 2 ELENLSLATPDGRVLL-----KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLFLP 70 (166)
T ss_pred EEEEEEEEcCCCCeee-----ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEEEC
Confidence 46788888853 4556 888 9999999999999999999999999999999 99999998764 4599999
Q ss_pred CCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcc
Q 023126 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (287)
Q Consensus 131 qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~ 210 (287)
|++.. + ..|+.+|+.+. .+.+||+||+||+++|++++.+|+++++||++
T Consensus 71 q~~~~-~--~~tv~~nl~~~----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 71 QRPYL-P--LGTLREQLIYP----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCcc-c--cccHHHHhhcc----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 99653 2 26888887542 35799999999999999999999999999999
Q ss_pred cCCChhhHHH----HHHhhcCceEEEeCHHHH
Q 023126 211 LFLDGGVWKD----VSSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 211 lllDe~~~~~----l~~~~~~~i~vtHd~~~~ 238 (287)
..+|....+. +.++....|++|||++..
T Consensus 120 ~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~ 151 (166)
T cd03223 120 SALDEESEDRLYQLLKELGITVISVGHRPSLW 151 (166)
T ss_pred cccCHHHHHHHHHHHHHhCCEEEEEeCChhHH
Confidence 9999844443 333323357999998754
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-29 Score=208.95 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=118.2
Q ss_pred ccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+.+ .++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~~~~~~~~~~~~~l-----~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 2 SINNVSFSYPEQEQQVL-----KNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred EEEEEEEEeCCCCccce-----EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHH
Confidence 567888888764 456 888 9999999999999999999999999999999 9999999888542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
...++|++|++..+ + .|+++|+ +..||+||+||+++|++++.+|+
T Consensus 74 ~~~i~~~~q~~~~~-~--~tv~~~i--------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 74 SSLISVLNQRPYLF-D--TTLRNNL--------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred HhhEEEEccCCeee-c--ccHHHhh--------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 24589999986432 2 4666654 67899999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
++++|+++..||. .+++.+.++.. ..|++||+++++..
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 9999999999998 34455544432 24699999998753
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=206.09 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=118.9
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------Cc
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 124 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~~ 124 (287)
+++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 2 ~~~~l~~~~~~~~~l-----~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 2 EVRNLSKRYGKKTAL-----DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR 73 (173)
T ss_pred EEEEEEEEECCeeee-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence 567888888766666 888 9999999999999999999999999999999 9999998887532 24
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
.++|++|++..++ .+|+.+|+. ||+||+||+++|++++.+|+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~~~----------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 74 RIGYLPEEPSLYE--NLTVRENLK----------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred cEEEEecCCcccc--CCcHHHHhh----------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 5899999965433 367776652 9999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++|||+..+|. .+++.++++.+ ..+++|||.+++..
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999998 44555555543 24689999998764
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-29 Score=240.18 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=146.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+++++++++.. .++ +++ +.+++|+++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 255 ~~~l~~~~~~~~----~~l-----~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 255 EVRLRLDGLKGP----GLR-----EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred CcEEEEeccccC----Ccc-----cceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCH
Confidence 346777777632 244 888 9999999999999999999999999999999 9999999887532
Q ss_pred ----CceeEEEeCCCC--CCCcccCCccccHHHHHHhcCC------CCCchHHHHHHHHHHhcc---CCCCCCCCCCccc
Q 023126 123 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEAHARRGA------PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGV 187 (287)
Q Consensus 123 ----~~~i~~v~qd~~--~~~~~~ltv~e~i~~~~~~~~~------~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~ 187 (287)
+..++|++|++. .++ +.+|+.+|+.+....... ......+.+.++++.++. ..++++.+|||||
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 401 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGII-PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGN 401 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCc-CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHH
Confidence 135899999853 222 247999998764321110 111223456778888774 3577888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|||+++|++++.+|++|++|||+..||.. +++.+.++.+ .+|++|||++++.. |++ |++++.|+++
T Consensus 402 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~ 481 (501)
T PRK11288 402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELARE 481 (501)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999993 4444444433 34699999999887 444 7888888777
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
+...
T Consensus 482 ~~~~ 485 (501)
T PRK11288 482 QATE 485 (501)
T ss_pred cCCH
Confidence 6543
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=229.76 Aligned_cols=189 Identities=13% Similarity=0.156 Sum_probs=151.6
Q ss_pred ccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 53 GKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
..+++++.|.+. ..+ .++ +++++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 322 ~~~~l~~~y~~g~~~l-----~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 322 SLENLSFRYPDGKPAL-----SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred eecceEEecCCCCccc-----CCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHH
Confidence 345999999876 667 888 9999999999999999999999999999999 9999999998754
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--------cCCCCCCC----CCCcccCCc
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--------NQGSVYAP----SFDHGVGDP 190 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--------~~~~~~~~----~lSgG~~qr 190 (287)
++.+++++|+++.+. -|++||+.++. +. ...+.+.+++++.+ .+.+..+. .|||||+||
T Consensus 394 ~k~i~~v~Q~p~lf~---gTireNi~l~~-----~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QR 464 (559)
T COG4988 394 RKQISWVSQNPYLFA---GTIRENILLAR-----PD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQR 464 (559)
T ss_pred HhHeeeeCCCCcccc---ccHHHHhhccC-----Cc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHH
Confidence 245999999988665 48999997642 21 22344555555544 23344444 599999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH--HHh----hccccCCChHHHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~~ 258 (287)
+++|+|+..++.++++||++.-+|- .+.+.+.++.+. ++++||++..+.. +++ ||+++.|+.+++...
T Consensus 465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999997 345555666554 4699999999988 555 899999999998543
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-28 Score=199.92 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=142.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
.++++++...-+++..+ +++ +.+.+||.++|.||||||||||+|+++.+.. |++|.+.+.|.+.
T Consensus 3 lle~kq~~y~a~~a~il-----~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea 74 (223)
T COG4619 3 LLELKQVGYLAGDAKIL-----NNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEA 74 (223)
T ss_pred chHHHHHHhhcCCCeee-----cceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHH
Confidence 34555555556677777 898 9999999999999999999999999999999 9999999998764
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
+..++|+-|.+..+. -||++|+.|....+. ...+...+...|.+++. ..++.+.+|||||+||+++++.|.
T Consensus 75 ~Rq~VsY~~Q~paLfg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq 149 (223)
T COG4619 75 YRQQVSYCAQTPALFG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ 149 (223)
T ss_pred HHHHHHHHHcCccccc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh
Confidence 245899999876554 499999998755442 23477788888888883 456788899999999999999999
Q ss_pred cCccEEEEcCcccCCChhhHHHHH----Hhhc----CceEEEeCHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDGGVWKDVS----SMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe~~~~~l~----~~~~----~~i~vtHd~~~~~~ 240 (287)
.-|++|++|+++..|||.--+.+. ..+. ..++||||.+.+.+
T Consensus 150 ~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~r 199 (223)
T COG4619 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR 199 (223)
T ss_pred cCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhh
Confidence 999999999999999994333333 3331 24699999999776
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-28 Score=241.01 Aligned_cols=194 Identities=18% Similarity=0.168 Sum_probs=151.3
Q ss_pred cCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--CcccccCCCCC----Ccee
Q 023126 54 KTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASSFDSQVKP----PDVA 126 (287)
Q Consensus 54 ~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~--~G~i~~~~~~~----~~~i 126 (287)
.+++++.|+++.++ +++ +.+++||++||+||||||||||+++|+|.++ |+ +|+|.++|... .+.+
T Consensus 71 ~~~l~~~~~~~~iL-----~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 71 ISDETRQIQERTIL-----NGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred cccccccCCCCeee-----eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence 45678889888777 998 9999999999999999999999999999998 85 89999988642 3458
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCC----CchHHHHHHHHHHhccCC-------CCCCCCCCcccCCchhhhh
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~-------~~~~~~lSgG~~qrv~ia~ 195 (287)
+|++|++...+ .+|++||+.+..... .+. .+..+++.++++.++... +.....||||||||+++|+
T Consensus 143 ~yv~Q~~~l~~--~lTV~E~l~~~a~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 143 GFVTQDDILYP--HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred EEECcccccCC--cCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 99999976544 389999998865432 221 122345677888877422 3456789999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHH-HHH---HHh----hccccCCChHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDT-AMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~-~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+++.+|+++++|||+..||. .+.+.++++.+ .+|+++|+++. +.+ +++ |+++..|+++++...
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~ 297 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAY 297 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHH
Confidence 99999999999999999998 44555555442 24689999973 443 544 888899998887653
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-28 Score=207.08 Aligned_cols=146 Identities=21% Similarity=0.178 Sum_probs=118.8
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---------
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--------- 122 (287)
+++++++.|+.+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~l~~~~~~~~~l-----~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 2 ELKNVSKRYGQKTVL-----NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP 73 (178)
T ss_pred EEEEEEEEECCeEEE-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence 567888999877667 888 9999999999999999999999999999999 9999998877432
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
...++|++|++..++ .+|+.+|+.+. ||+||+||+++|++++.+|
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~~~l~~~--------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 74 LRRRIGMVFQDFALFP--HLTVLENIALG--------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred HhhcEEEEecCCccCC--CCCHHHheeec--------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 235899999865433 26776665431 9999999999999999999
Q ss_pred cEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+++++|||+..+|.. +++.+.++.+ ..+++|||++++..
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999999999983 4444444433 23689999998753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-28 Score=239.66 Aligned_cols=190 Identities=13% Similarity=0.106 Sum_probs=145.9
Q ss_pred ccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 51 VFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 51 ~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
-++++++++.| ++..++ +++ +++++|+.+||+|+||||||||+++|+|++ |++|+|.++|.+..
T Consensus 349 ~i~~~~vsf~~~~~~~vL-----~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLA-----GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPE 419 (588)
T ss_pred eEEEEeeEEeccCCCeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHH
Confidence 47888998544 455566 888 999999999999999999999999999988 77999999986542
Q ss_pred ---ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------HhccCCCCC----CCCCCccc
Q 023126 124 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGV 187 (287)
Q Consensus 124 ---~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~~----~~~lSgG~ 187 (287)
+.++|++|+++.+. -|++||+.++. +. ...+++.++++ .+.++.+.. -..|||||
T Consensus 420 ~lr~~i~~v~Q~~~LF~---~TI~eNI~~g~-----~~-~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQ 490 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPH---GTLRDNVLLGN-----PD-ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQ 490 (588)
T ss_pred HHHhheEEecCCCcCCC---cCHHHHhhcCC-----CC-CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHH
Confidence 45999999987554 59999998642 21 22333333333 332333433 34799999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||++||+|++.+|+++++||++.-+|.+ +.+.+.++.+ +.|+|||+++.+.. +++ |++++.|+.+++
T Consensus 491 rQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHH
Confidence 99999999999999999999999999983 4444555433 35799999998877 554 899999999988
Q ss_pred HHH
Q 023126 256 AKW 258 (287)
Q Consensus 256 ~~~ 258 (287)
++.
T Consensus 571 ~~~ 573 (588)
T PRK11174 571 SQA 573 (588)
T ss_pred Hhc
Confidence 653
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-28 Score=207.32 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=150.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------- 123 (287)
+++.++++-|...+..=..+.+++ +.+.+|+++-|+|.||||||||++.|+|.+. |++|+|.++|.+..
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHHH
Confidence 456666666665544444444788 9999999999999999999999999999999 99999999987642
Q ss_pred -ceeEEEeCCCCCCCcccCCccccHHHHHHh---cCCCCCc---hHHHHHHHHHHhc----cCCCCCCCCCCcccCCchh
Q 023126 124 -DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTF---NPLLLLNCLKNLR----NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 124 -~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~---~~~~~~~---~~~~~~~~l~~l~----~~~~~~~~~lSgG~~qrv~ 192 (287)
..++-|+||+..-..+.+|+.||+...... ++...+. ..+.+.+.+..++ ...+.++.-|||||||-++
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 236778999987777789999999886543 2332221 2334455566655 3456788899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChhhHHHHHHhhc--------CceEEEeCHHHHHH---HHh----hcccc
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~--------~~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
+.+|...+|++|++||-+..||+...+.+.++.. ..++|||+|+.+.. |.+ |+++-
T Consensus 159 L~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 159 LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 9999999999999999999999955555544433 24699999999988 666 78774
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-28 Score=244.21 Aligned_cols=192 Identities=15% Similarity=0.106 Sum_probs=150.3
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
..++++++++.|.+ +.++ +++ +++++|++++|+||||||||||+++|.|+++ |++|+|.++|.+.
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL-----~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~ 548 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVL-----KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQY 548 (711)
T ss_pred CeEEEEEEEEECCCCCCCccc-----cCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhc
Confidence 45889999999974 3456 888 9999999999999999999999999999999 9999999998653
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCC
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFD 184 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lS 184 (287)
++.++|++|+++.+. .|++||+.++. +.. ..+++.++++..+ .+.+. .-..||
T Consensus 549 ~~~~lr~~i~~v~Q~~~lF~---gTIreNI~~g~-----~~~-~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 619 (711)
T TIGR00958 549 DHHYLHRQVALVGQEPVLFS---GSVRENIAYGL-----TDT-PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLS 619 (711)
T ss_pred CHHHHHhhceEEecCccccc---cCHHHHHhcCC-----CCC-CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCC
Confidence 245999999987554 59999997642 211 2334444444332 22333 234799
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh---c-CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~---~-~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||||+++|+++..+++++++||++.-+|.+..+.+.+.. + ..|+|||+++.+.. +++ |++++.|+.++
T Consensus 620 GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHH
Confidence 99999999999999999999999999999996555555422 1 34699999998876 555 89999999999
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
+++.
T Consensus 700 L~~~ 703 (711)
T TIGR00958 700 LMED 703 (711)
T ss_pred HHhC
Confidence 8653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-28 Score=238.74 Aligned_cols=183 Identities=13% Similarity=0.083 Sum_probs=143.3
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|++.. + +++ +.+.+||++||+||||||||||+++|+|+++ |++|+|.++ ..+
T Consensus 337 ~~~~l~~~~ls~~~~~~~-l-----~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i 402 (590)
T PRK13409 337 RETLVEYPDLTKKLGDFS-L-----EVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKI 402 (590)
T ss_pred CceEEEEcceEEEECCEE-E-----EecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeE
Confidence 456899999999997642 4 666 9999999999999999999999999999999 999999875 248
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|+.... ..+|+.+++.+....+. ......++++.++ ...++++.+|||||+||+++|++++.+|+++
T Consensus 403 ~y~~Q~~~~~--~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 403 SYKPQYIKPD--YDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred EEecccccCC--CCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999986533 34899999876532221 1224567777776 3457889999999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh---hccccCCC
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGK 251 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~---gr~v~~G~ 251 (287)
++|||+..||. .+++.|+++.. ..+++|||++++.. |++ |+....|.
T Consensus 476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~ 536 (590)
T PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGH 536 (590)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeee
Confidence 99999999998 44555555532 24699999999876 444 55544443
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-28 Score=204.13 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=114.8
Q ss_pred ccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+. ..++ +++ +.+.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~l~~~~~~~~~~~l-----~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 2 EVENVSFRYPGAEPPVL-----RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNE 73 (173)
T ss_pred EEEEEEEEcCCCCCcce-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHH
Confidence 56788888865 3456 888 9999999999999999999999999999999 9999999887532
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
...++|++|++.. +. .|+.+|+ ||+||+||+++|++++.++
T Consensus 74 ~~~~i~~~~q~~~~-~~--~tv~~~l-----------------------------------LS~G~~qrv~la~al~~~p 115 (173)
T cd03246 74 LGDHVGYLPQDDEL-FS--GSIAENI-----------------------------------LSGGQRQRLGLARALYGNP 115 (173)
T ss_pred HHhheEEECCCCcc-cc--CcHHHHC-----------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 2358999998643 22 3666665 9999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
+++++|+|+..+|. .+++.++++.+ ..+++|||++.+
T Consensus 116 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 116 RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999999999998 34445544433 246999999876
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-29 Score=250.26 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=152.5
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
.+--++++|+.++|..|.-+ .+.+++ +.|++|+.++|+|||||||||++++|.+++. |++|+|.++|.+.+
T Consensus 347 ~~g~ief~nV~FsYPsRpdv--~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~ 421 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDV--KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLN 421 (1228)
T ss_pred cccceEEEEEEecCCCCCcc--hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcc
Confidence 34568899999999988622 334888 9999999999999999999999999999999 99999999998753
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHH---------HHhccCCC----CCCCCCCc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL---------KNLRNQGS----VYAPSFDH 185 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l---------~~l~~~~~----~~~~~lSg 185 (287)
..+|+|+|+|..+ . .|++||+.++. +.+ ..+.+.++. ..+-.+.+ ..-.+|||
T Consensus 422 ~~~lr~~iglV~QePvlF-~--~tI~eNI~~G~-----~da-t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 422 LKWLRSQIGLVSQEPVLF-A--TTIRENIRYGK-----PDA-TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred hHHHHhhcCeeeechhhh-c--ccHHHHHhcCC-----Ccc-cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 3599999998543 3 69999998653 221 122222222 22222222 33447999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc------CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~------~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||++||+|++.+|++|++||.+..||.+--+.+++.++ ++|+|+|.+.++.. +++ |++++.|+.+
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999854444444433 36899999999988 444 9999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
|++..
T Consensus 573 ELi~~ 577 (1228)
T KOG0055|consen 573 ELIAL 577 (1228)
T ss_pred HHHhc
Confidence 98864
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-28 Score=240.57 Aligned_cols=180 Identities=15% Similarity=0.134 Sum_probs=142.8
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
.+.++++++++++.|+++.++ +++ +.|.+|+++||+||||||||||+++|+|+++ |++|+|.++.. ..
T Consensus 315 ~~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~ 383 (635)
T PRK11147 315 SGKIVFEMENVNYQIDGKQLV-----KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTK---LE 383 (635)
T ss_pred CCCceEEEeeeEEEECCeEEE-----cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCC---cE
Confidence 467799999999999987777 888 9999999999999999999999999999999 99999988432 24
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++|++|+...++ +.+|+.+|+.+....... ......+.++++.++. ..++++.+||||||||+++|++++.+|.
T Consensus 384 i~y~~q~~~~l~-~~~tv~e~l~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 384 VAYFDQHRAELD-PEKTVMDNLAEGKQEVMV--NGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred EEEEeCcccccC-CCCCHHHHHHhhcccccc--cchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 899999753233 347999998764321111 1123456777777763 3467888999999999999999999999
Q ss_pred EEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+|++|+|+..||....+.+.++.. .+|+||||.+++..
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~ 502 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDN 502 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 999999999999954444444332 35799999998865
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-28 Score=245.40 Aligned_cols=191 Identities=15% Similarity=0.120 Sum_probs=148.5
Q ss_pred ccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
.+++++++++|+. +.++ +++ +++++|+.+||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 473 ~I~~~~vsf~y~~~~~iL-----~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNIL-----SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRH 544 (708)
T ss_pred cEEEEEEEEEcCCCCcce-----eceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHH
Confidence 5788999999974 4556 888 9999999999999999999999999999999 9999999998653
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG~ 187 (287)
++.++|++|+++.+. -|++||+.++.. + ..+.+++.++++..+ .+.+. ....|||||
T Consensus 545 ~lr~~i~~v~Q~~~lf~---gTI~eNi~l~~~----~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFS---GSILENLLLGAK----E-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred HHHHheEEEecCceehh---HHHHHHHhccCC----C-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 346999999987554 499999976421 1 122333444443322 22333 334799999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc-CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~-~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
|||+++|+|+..+|+++++||++.-+|++ +.+.+.++.+ +.|+|||+++.+.. +++ |++++.|+.++++
T Consensus 617 rQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~ 696 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL 696 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999983 4444554322 34799999998866 555 8999999998876
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 697 ~ 697 (708)
T TIGR01193 697 D 697 (708)
T ss_pred h
Confidence 4
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-28 Score=207.63 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=120.9
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCcccccCCCCC-
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~G~i~~~~~~~- 122 (287)
.++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|++ + |++|++.+++.+.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~ 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLL-----NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLD 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeE-----EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehH
Confidence 4678889999974 4455 888 999999999999999999999999999975 5 8999999887542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
...++|++|++..++ .+|+.+|+.+.... . .|||||+||+++|++++.
T Consensus 75 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~----------------~-----------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 75 KNFQRSTGYVEQQDVHSP--NLTVREALRFSALL----------------R-----------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred HHhhhceEEecccCcccc--CCcHHHHHHHHHHH----------------h-----------cCCHHHhHHHHHHHHHhc
Confidence 345899999865443 37899988754210 0 899999999999999999
Q ss_pred CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHH
Q 023126 200 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 200 ~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
+|+++++|||+..+|. .+++.++++.+ ..|++||+++.
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 9999999999999999 44455555432 24699999984
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-28 Score=239.09 Aligned_cols=189 Identities=14% Similarity=0.153 Sum_probs=149.2
Q ss_pred ccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
-++++++++.|+. ..++ +++ +++++|+.+||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 340 ~i~~~~v~f~y~~~~~il-----~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVL-----QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHS 411 (592)
T ss_pred eEEEEEEEEEeCCCCcee-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHH
Confidence 4788999999864 3455 888 9999999999999999999999999999999 9999999998653
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG~ 187 (287)
++.++|++|+++.+. -|+++|+.++. ..+.+++.++++.++ .+.+. .-..|||||
T Consensus 412 ~l~~~i~~v~Q~~~lF~---~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGq 481 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLA---DTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481 (592)
T ss_pred HHHhheEEEccCCcccc---chHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 355999999987554 49999998742 122344445544443 22333 234799999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
+||+++|+|+..+++++++||++.-+|++ +.+.+.++.. .+|++||+++.... +++ |++++.|+.+++
T Consensus 482 rQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999993 4444555432 35799999988877 555 899999999998
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
++
T Consensus 562 ~~ 563 (592)
T PRK10790 562 LA 563 (592)
T ss_pred Hh
Confidence 64
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-28 Score=244.10 Aligned_cols=192 Identities=13% Similarity=0.104 Sum_probs=149.9
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++|+. +.++ +++ +++++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL-----~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~ 533 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPAL-----DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQID 533 (694)
T ss_pred ceEEEEEEEEEeCCCCccce-----eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCC
Confidence 35889999999964 3456 888 9999999999999999999999999999999 9999999998653
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSg 185 (287)
++.++|++|+++.+. -|++||+.++. +. .+.+++.++++..+ .+.+. .-..|||
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~---~TI~eNi~~~~-----~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSg 604 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFY---GTLRDNIALGA-----PY-ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG 604 (694)
T ss_pred HHHHHhccEEECCChhhhh---hhHHHHHhCCC-----CC-CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCH
Confidence 346999999987554 49999997542 21 23344444444332 22232 3347999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|+..+|+++++||++.-+|++ +.+.+.++.+ +.|+|||+++.+.. +++ |++++.|+.+
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~ 684 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKD 684 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 9999999999999999999999999999994 4444555432 35799999998866 555 8999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
++++.
T Consensus 685 eLl~~ 689 (694)
T TIGR03375 685 QVLEA 689 (694)
T ss_pred HHHHH
Confidence 87654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-28 Score=240.81 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=150.3
Q ss_pred cccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 52 FGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 52 ~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
++++++++.|+ +..++ +++ +.+++||.+||+||||||||||++.|.++++ |++|+|.++|.+.+
T Consensus 329 I~f~~vsf~y~~~~~vl-----~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 329 IEFENVSFSYPGKKPVL-----KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred EEEEEEEEEcCCCCccc-----cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 88999999999 57788 888 9999999999999999999999999999999 99999999886543
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHH---------HHHhccCCCCCC----CCCCcccC
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGSVYA----PSFDHGVG 188 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~~~~~~----~~lSgG~~ 188 (287)
+.+++++||++.+. -|+++|+.++... . ..+++.++ +..+.++.+..+ ..||||||
T Consensus 401 lr~~I~~V~Qd~~LF~---~TI~~NI~~g~~~-----a-t~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 401 LRKRIGIVSQDPLLFS---GTIRENIALGRPD-----A-TDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHhccEEcccceeec---ccHHHHHhcCCCC-----C-CHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 45999999977554 4899999875322 1 12222222 223322344444 38999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
||++||+|+..+|+++++||.+.-+|.+ +++.+.++.+ ++++|+|.+..+.. +++ |++++.|+.+|++
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999984 3444443332 45789999999887 555 8999999999987
Q ss_pred HH
Q 023126 257 KW 258 (287)
Q Consensus 257 ~~ 258 (287)
..
T Consensus 552 ~~ 553 (567)
T COG1132 552 AK 553 (567)
T ss_pred Hc
Confidence 64
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-28 Score=236.02 Aligned_cols=195 Identities=21% Similarity=0.169 Sum_probs=145.8
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++.. .+ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.+++...
T Consensus 265 ~~~~l~~~~l~~~-----~l-----~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~ 331 (510)
T PRK15439 265 GAPVLTVEDLTGE-----GF-----RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALS 331 (510)
T ss_pred CCceEEEeCCCCC-----Cc-----cceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCC
Confidence 3457888888731 34 788 9999999999999999999999999999999 9999999887532
Q ss_pred -----CceeEEEeCCCC--CCCcccCCccccHHHHHHh-cCC--CCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCC
Q 023126 123 -----PDVATVLPMDGF--HLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 -----~~~i~~v~qd~~--~~~~~~ltv~e~i~~~~~~-~~~--~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~q 189 (287)
+..++|++|+.. .++ +.+|+.+|+...... ... ......+.+.++++.++. ..++++.+|||||||
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 410 (510)
T PRK15439 332 TAQRLARGLVYLPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQ 410 (510)
T ss_pred HHHHHhCCcEECCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHH
Confidence 134899999842 222 247888887542111 111 111223456778888774 346788899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
|++||++++.+|++|++|||+..||. .+++.+.++.+ ..|++|||++++.. |++ |+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999 34445554433 24799999999886 444 788877777664
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 491 ~ 491 (510)
T PRK15439 491 N 491 (510)
T ss_pred C
Confidence 4
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-28 Score=237.26 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=150.1
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..+++++++++|++ +.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 337 ~~i~~~~v~f~y~~~~~~il-----~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~ 408 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVL-----KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYS 408 (574)
T ss_pred CeEEEEEEEEECCCCCCcce-----ecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCC
Confidence 45889999999964 3456 888 9999999999999999999999999999999 99999999986532
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--------CCCC----CCCCCCcc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--------QGSV----YAPSFDHG 186 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--------~~~~----~~~~lSgG 186 (287)
+.++|++|+++.+. -|++||+.++. + ....+.+.++++..+. +.+. ....||||
T Consensus 409 ~~~~r~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 409 EAALRQAISVVSQRVHLFS---ATLRDNLLLAA-----P-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred HHHHHhheeEEcccchhhc---ccHHHHhhcCC-----C-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHH
Confidence 35999999976543 48999987642 2 1234455556655542 1122 34479999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||+++|++++.+|+++++||++..+|++ +.+.+.+..+ ..|++||+++.+.. +++ |++++.|+.+|
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999994 4444444432 34699999998876 554 89999999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+++
T Consensus 560 l~~ 562 (574)
T PRK11160 560 LLA 562 (574)
T ss_pred HHh
Confidence 764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=234.23 Aligned_cols=185 Identities=15% Similarity=0.013 Sum_probs=138.3
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccccCCCCC---
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP--- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-~~G~i~~~~~~~--- 122 (287)
..++++++++++.|+++.++ +++ +.+++|+++||+||||||||||+++|+|+++ | ++|+|.++|...
T Consensus 257 ~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~ 328 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDRPIL-----HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSG 328 (490)
T ss_pred CCceEEEeceEEEECCeeEE-----eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCC
Confidence 45789999999999887777 888 9999999999999999999999999999875 5 699998887432
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHh----cCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCC
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~----~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~q 189 (287)
+..++|++|+....+....++.+++...... +........+++.++++.++. ..+.++.+|||||||
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred CCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHH
Confidence 2348999998543222123554444322111 111111223466788888873 346778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---C-ceEEEeCHHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---E-KWFIEVDLDTAMQ 240 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~-~i~vtHd~~~~~~ 240 (287)
|+++|++++.+|++|++|||+..||. .+++.|.++.. . +|++|||++++..
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 99999999999999999999999999 34444555432 2 4699999998864
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=204.13 Aligned_cols=166 Identities=11% Similarity=0.112 Sum_probs=126.2
Q ss_pred cccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 52 FGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 52 ~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
++++++++.|+.+ .++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 l~~~~l~~~~~~~~~~~~~il-----~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTL-----KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----S 67 (204)
T ss_pred CEEeEEEEecCCCCcccccee-----eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----E
Confidence 3578889999764 466 888 9999999999999999999999999999999 9999999887 5
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHH------HHhc-------cCCCCCCCCCCcccCCchh
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL------KNLR-------NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l------~~l~-------~~~~~~~~~lSgG~~qrv~ 192 (287)
++|++|++..+ + .|+.+|+.+.... . .+...+.+ +.+. ...+..+..||+||+||++
T Consensus 68 i~~~~q~~~l~-~--~t~~enl~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~ 137 (204)
T cd03250 68 IAYVSQEPWIQ-N--GTIRENILFGKPF---D----EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRIS 137 (204)
T ss_pred EEEEecCchhc-c--CcHHHHhccCCCc---C----HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHH
Confidence 99999997643 2 6999998763211 1 11111222 1221 1134567799999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChhhHHHH-----HHhhc---CceEEEeCHHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDV-----SSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~~~~~l-----~~~~~---~~i~vtHd~~~~~~ 240 (287)
+|++++.+|+++++|+++..||....+.+ .+..+ .+|++||+++.+..
T Consensus 138 laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 138 LARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 99999999999999999999998443333 22322 24689999988764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-28 Score=236.74 Aligned_cols=191 Identities=16% Similarity=0.147 Sum_probs=147.3
Q ss_pred CccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
..+++++++++|+. ..++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 333 ~~I~~~~vsf~y~~~~~iL-----~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~ 404 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGV-----EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTR 404 (588)
T ss_pred CeEEEEEEEEEeCCCCcee-----cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCH
Confidence 35889999999965 4456 888 9999999999999999999999999999999 9999999998653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG 186 (287)
++.++|++|+++.+. -|+++|+.++ .+. ...+++.+.++.++ .+.+. ....||||
T Consensus 405 ~~~r~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~-~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 405 ASLRRNIAVVFQDAGLFN---RSIEDNIRVG-----RPD-ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred HHHHhheEEEecCccccc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 246999999977553 5999999753 121 12233333333322 22232 23479999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||+++|+++..+++++++||++.-+|+ .+.+.+.+..+ ..|+|||+++.+.. +++ |++++.|+.++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999 34455555532 35799999998766 554 88899999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
++.
T Consensus 556 l~~ 558 (588)
T PRK13657 556 LVA 558 (588)
T ss_pred HHH
Confidence 753
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-28 Score=201.71 Aligned_cols=142 Identities=18% Similarity=0.206 Sum_probs=115.3
Q ss_pred ccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+.. .++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|++.++|...
T Consensus 2 ~~~~l~~~~~~~~~~~l-----~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 2 EFKNVSFSYPGRPKPVL-----KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLES 73 (171)
T ss_pred EEEEEEEEcCCCCcccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHH
Confidence 567888888765 566 888 9999999999999999999999999999999 9999999888542
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
...++|++|++. ++. .|+.+|+ ||+||+||+++|++++.+|
T Consensus 74 ~~~~i~~~~~~~~-~~~--~t~~e~l-----------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 74 LRKNIAYVPQDPF-LFS--GTIRENI-----------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred HHhhEEEEcCCch-hcc--chHHHHh-----------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 234889998864 222 3665554 9999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
+++++|||+..+|. .+++.+.++.. ..+++|||++.+..
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 99999999999998 34444444433 24689999998753
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-28 Score=207.67 Aligned_cols=165 Identities=16% Similarity=0.072 Sum_probs=126.8
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~--l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+ ++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVGGKEIL-----KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeCCEEee-----eccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHH
Confidence 3567889999876666 888 99999999999999999999999999999 47 9999999887532
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
...++|++|++..++ .+++.+++ ......||+||+||+++|++++.
T Consensus 73 ~~~~~~i~~v~q~~~~~~--~~~~~~~l-----------------------------~~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 73 ERARLGIFLAFQYPPEIP--GVKNADFL-----------------------------RYVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred HHhhCcEEEeecChhhcc--CccHHHHH-----------------------------hhccccCCHHHHHHHHHHHHHhc
Confidence 123889999864332 23433322 11235899999999999999999
Q ss_pred CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH----HHh----hccccCCChHHHH
Q 023126 200 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 200 ~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~----rv~----gr~v~~G~~~ev~ 256 (287)
+|+++++|+++..+|. .+++.+.++.+ ..|++||+++.+.. |++ |++++.| +.++.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999998 45555555543 24699999998762 333 7777777 44443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-28 Score=213.28 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=140.3
Q ss_pred CCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
...++++++++.|+. ..++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~ 88 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVL-----KHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKL 88 (257)
T ss_pred CceEEEEEEEEEeCCCCCcce-----eEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhC
Confidence 346788899999976 3555 888 9999999999999999999999999999999 9999999887542
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHH---------HHHh--c--cCCCCCCCCCC
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNL--R--NQGSVYAPSFD 184 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~---------l~~l--~--~~~~~~~~~lS 184 (287)
...++|++|++.. +. .|+.+|+... .......+.+. ++.+ + ...+.....||
T Consensus 89 ~~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS 158 (257)
T cd03288 89 PLHTLRSRLSIILQDPIL-FS--GSIRFNLDPE-------CKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFS 158 (257)
T ss_pred CHHHHhhhEEEECCCCcc-cc--cHHHHhcCcC-------CCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCC
Confidence 2458999999743 32 4777766421 00111122222 2222 1 11234566999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhhH----HHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~----~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
+||+||+++|++++.+|+++++|+++..+|.... +.+.++.. ..|++||+++.+.. |++ |++++.|++
T Consensus 159 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~ 238 (257)
T cd03288 159 VGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTP 238 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999998433 33333322 23689999999876 444 788888888
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 239 ~~~~~ 243 (257)
T cd03288 239 ENLLA 243 (257)
T ss_pred HHHHh
Confidence 77644
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-27 Score=209.04 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=118.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
..+++|++++|+||||||||||+++|+|+++ |++|+|.+++. .++|++|+....+ .+|+.+++........
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~ 90 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSYKPQYIKADY--EGTVRDLLSSITKDFY 90 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEEecccccCCC--CCCHHHHHHHHhhhcc
Confidence 3456899999999999999999999999999 99999998774 5899999865433 3799998865432221
Q ss_pred CCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---
Q 023126 156 APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--- 226 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--- 226 (287)
. ......++++.++ ...++++.+|||||+||++||++++.+|+++++||++..||. .+++.++++..
T Consensus 91 ~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 166 (246)
T cd03237 91 T----HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166 (246)
T ss_pred c----cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 1223456666666 345678889999999999999999999999999999999998 34445555432
Q ss_pred -CceEEEeCHHHHHH
Q 023126 227 -EKWFIEVDLDTAMQ 240 (287)
Q Consensus 227 -~~i~vtHd~~~~~~ 240 (287)
..|++|||++++..
T Consensus 167 ~tiiivsHd~~~~~~ 181 (246)
T cd03237 167 KTAFVVEHDIIMIDY 181 (246)
T ss_pred CEEEEEeCCHHHHHH
Confidence 34699999998875
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-28 Score=239.14 Aligned_cols=198 Identities=16% Similarity=0.089 Sum_probs=156.1
Q ss_pred CCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 49 QPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
.++++++++++.|+. ...+ +++ +++++||+++|+|+||||||||+++|+|+++ |++|++.++|.+.
T Consensus 2 ~~~l~~~nl~~~y~~~~~~~~il-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~ 73 (648)
T PRK10535 2 TALLELKDIRRSYPSGEEQVEVL-----KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVA 73 (648)
T ss_pred CcEEEEeeEEEEeCCCCCCeeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcC
Confidence 357899999999963 2456 888 9999999999999999999999999999999 9999999988542
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCC
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~q 189 (287)
.+.++|++|++..++ ++|+.+|+.+.....+....+..+++.+.++.++ ...+..+.+||+||+|
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~q 151 (648)
T PRK10535 74 TLDADALAQLRREHFGFIFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQ 151 (648)
T ss_pred cCCHHHHHHHHhccEEEEeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHH
Confidence 235899999975333 3789999987654444333334456778888877 3446778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
|+++|++++.+|+++++|||+..||.. +.+.+.++.+ ..+++||+++.+.. |++ |++++.|++++..
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999993 4444444432 24699999998755 443 7888888887754
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-27 Score=235.40 Aligned_cols=191 Identities=15% Similarity=0.052 Sum_probs=142.3
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEE
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 129 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v 129 (287)
++.++++++.|+.+.++ +++ +.|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++.. .++|+
T Consensus 1 ~i~i~nls~~~g~~~~l-----~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~---~i~~~ 69 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLL-----DNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNW---QLAWV 69 (638)
T ss_pred CEEEEEEEEEeCCceee-----cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC---EEEEE
Confidence 46789999999998888 999 9999999999999999999999999999999 999999887643 48899
Q ss_pred eCCCCCCCcccCCccccHHHH-----------------------HHhc----CCCCCchHHHHHHHHHHhcc---CCCCC
Q 023126 130 PMDGFHLYLSQLDAMEDPKEA-----------------------HARR----GAPWTFNPLLLLNCLKNLRN---QGSVY 179 (287)
Q Consensus 130 ~qd~~~~~~~~ltv~e~i~~~-----------------------~~~~----~~~~~~~~~~~~~~l~~l~~---~~~~~ 179 (287)
+|+..... .++.+++... .... .........++.++++.++. ..+++
T Consensus 70 ~q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 70 NQETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred ecCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 98643221 2333222110 0000 01111223467788888884 34678
Q ss_pred CCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccc-
Q 023126 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI- 247 (287)
Q Consensus 180 ~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v- 247 (287)
+.+||||||||++||++++.+|++|++|+|+..||......+.+++. .+|+||||++++.. +++ |++.
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 88999999999999999999999999999999999955555544432 35799999999876 444 6665
Q ss_pred cCCChHHH
Q 023126 248 STGKPPDV 255 (287)
Q Consensus 248 ~~G~~~ev 255 (287)
..|.....
T Consensus 227 ~~g~~~~~ 234 (638)
T PRK10636 227 YTGNYSSF 234 (638)
T ss_pred ecCCHHHH
Confidence 34655543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-28 Score=235.50 Aligned_cols=191 Identities=15% Similarity=0.102 Sum_probs=148.6
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
-+++++++++|.+ +.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 330 ~i~~~~v~f~y~~~~~~il-----~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~ 401 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPAL-----DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTL 401 (571)
T ss_pred eEEEEEEEEEcCCCCCccc-----cCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCH
Confidence 4788999999965 4456 888 9999999999999999999999999999999 9999999998643
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG 186 (287)
++.++|++|+++.+. -|+++|+.++. ++..+.+++.+.++.++ .+.+..+ ..||||
T Consensus 402 ~~~~~~i~~v~Q~~~lf~---~Ti~~Ni~~~~-----~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFN---DTIANNIAYGR-----TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred HHHHhhceEEccCccccc---ccHHHHHhcCC-----CCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 345999999987554 48999987531 11233445555555443 2333333 379999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||+++|+++..+++++++||++.-+|++ +.+.+.+..+ ..|+|||+.+.... +++ |++++.|+.++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999994 4444555533 34699999988766 554 78889999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+++
T Consensus 554 l~~ 556 (571)
T TIGR02203 554 LLA 556 (571)
T ss_pred HHH
Confidence 753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-28 Score=205.39 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=112.2
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeC
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 131 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~q 131 (287)
+++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 ~~~~l~~~~~~~~~l-----~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~------- 65 (180)
T cd03214 1 EVENLSVGYGGRTVL-----DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLAS------- 65 (180)
T ss_pred CeeEEEEEECCeeeE-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCc-------
Confidence 457888888876666 888 9999999999999999999999999999999 999998887632200
Q ss_pred CCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCc
Q 023126 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (287)
Q Consensus 132 d~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~ 209 (287)
. .. ......+.+.. ++++.++ ...+..+..||+||+||+++|++++.+|+++++|+|
T Consensus 66 --~--~~--~~~~~~i~~~~---------------q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 66 --L--SP--KELARKIAYVP---------------QALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred --C--CH--HHHHHHHhHHH---------------HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0 00 00000111110 0444444 234567789999999999999999999999999999
Q ss_pred ccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 210 YLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 210 ~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+..+|. .+.+.+.++.. ..|++||+++.+..
T Consensus 125 ~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 125 TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999998 34444444433 34699999998755
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-27 Score=235.08 Aligned_cols=193 Identities=15% Similarity=0.037 Sum_probs=143.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEE
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 129 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v 129 (287)
+++++++++.|+.+.++ +++ +.|.+|+++||+||||||||||+++|+|+++ |++|+|.+++.. .++++
T Consensus 3 ~l~i~~ls~~~~~~~il-----~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~l 71 (635)
T PRK11147 3 LISIHGAWLSFSDAPLL-----DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVARL 71 (635)
T ss_pred EEEEeeEEEEeCCceeE-----eCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEEe
Confidence 68899999999988777 999 9999999999999999999999999999999 999999887532 36778
Q ss_pred eCCCCCCCcccCCccccHH------------------------------HHHHh---cC-CCCCchHHHHHHHHHHhccC
Q 023126 130 PMDGFHLYLSQLDAMEDPK------------------------------EAHAR---RG-APWTFNPLLLLNCLKNLRNQ 175 (287)
Q Consensus 130 ~qd~~~~~~~~ltv~e~i~------------------------------~~~~~---~~-~~~~~~~~~~~~~l~~l~~~ 175 (287)
+|++... ...++.+++. ..... +. ........++.++++.++..
T Consensus 72 ~q~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 72 QQDPPRN--VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred ccCCCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 7764311 1123333321 00000 00 01112244677888888865
Q ss_pred CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh----cCceEEEeCHHHHHH---HHh----h
Q 023126 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL----K 244 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~----~~~i~vtHd~~~~~~---rv~----g 244 (287)
.++++.+|||||+||++||++++.+|++|++|+|+..||....+.+.+++ ..+|++|||.+++.. +++ |
T Consensus 150 ~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G 229 (635)
T PRK11147 150 PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRG 229 (635)
T ss_pred CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 67888999999999999999999999999999999999995444444443 345799999999876 554 6
Q ss_pred ccc-cCCChHHHH
Q 023126 245 RHI-STGKPPDVA 256 (287)
Q Consensus 245 r~v-~~G~~~ev~ 256 (287)
+++ ..|...+..
T Consensus 230 ~i~~~~g~~~~~~ 242 (635)
T PRK11147 230 KLVSYPGNYDQYL 242 (635)
T ss_pred EEEEecCCHHHHH
Confidence 776 357665543
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-28 Score=231.99 Aligned_cols=194 Identities=11% Similarity=0.072 Sum_probs=141.3
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..++++++++++.+ +.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 247 ~~~~i~~~~l~~~~--~~~l-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 247 GEVILEVRNLTSLR--QPSI-----RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHN 316 (491)
T ss_pred CCcEEEEeCccccc--Cccc-----ceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCC
Confidence 34688999998873 3355 888 9999999999999999999999999999999 99999999875431
Q ss_pred ------ceeEEEeCCCC--CCCcccCCcccc-----HHHHHHhcCC-CCCchHHHHHHHHHHhcc---CCCCCCCCCCcc
Q 023126 124 ------DVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHG 186 (287)
Q Consensus 124 ------~~i~~v~qd~~--~~~~~~ltv~e~-----i~~~~~~~~~-~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG 186 (287)
..++|++|+.. .++. .+++.+| +.+....++. ......+.+.+.++.++. ..++++.+||||
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 395 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYA-YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGG 395 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCccc-CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcH
Confidence 23889999852 1222 3555544 3221111121 111223456677777763 347788899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||||+++|++++.+|++|++|||+..+|. .+++.+.++.. .+|++|||++++.. |++ |+++..+++
T Consensus 396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 99999999999999999999999999999 34444544432 24699999999876 443 666654443
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-27 Score=232.71 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=131.4
Q ss_pred ccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 51 VFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
.+++++++++|++. .++ +++ +++++|+.++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 334 ~I~~~~vsf~Y~~~~~vL-----~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVL-----DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDE 405 (529)
T ss_pred eEEEEEEEEecCCCCcee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHH
Confidence 48899999999753 355 888 9999999999999999999999999999999 99999999986543
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCcccC
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVG 188 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG~~ 188 (287)
+.++|++|+++.+. -|++||+.++. +. ...+++.++++..+ ++.+..+ ..||||||
T Consensus 406 lr~~i~~V~Q~~~lF~---~TI~eNI~~g~-----~~-~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQr 476 (529)
T TIGR02868 406 LRRRISVFAQDAHLFD---TTVRDNLRLGR-----PD-ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGER 476 (529)
T ss_pred HHhheEEEccCccccc---ccHHHHHhccC-----CC-CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHH
Confidence 46999999987654 49999998642 21 12334444444433 2333332 37999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDL 235 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~ 235 (287)
||+++|+|+..+|+++++||++.-+|.+ +.+.+.+... +.|+|||++
T Consensus 477 QRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 477 QRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999983 4455555432 346899974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-27 Score=204.92 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=125.5
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc-cCCCCCCceeEEEeCCCCCCCcccCCccccHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 150 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~-~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~ 150 (287)
+++ +.+++|++++|+||||||||||+++|+|+++ |++|+|. +++... .+.+++.. .+.+|+.+|+.+.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~-----~~~~~~~l--~~~ltv~enl~~~ 73 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL-----PLGANSFI--LPGLTGEENARMM 73 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee-----cccccccc--CCcCcHHHHHHHH
Confidence 677 9999999999999999999999999999999 9999986 655321 12233222 2348999999887
Q ss_pred HHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhh-
Q 023126 151 HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMF- 225 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~- 225 (287)
...++.......+.+.+ +..+....+.++..||+||+||+++|++++.+|+++++||++..+|.. +++.+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~ 152 (213)
T PRK15177 74 ASLYGLDGDEFSHFCYQ-LTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ 152 (213)
T ss_pred HHHcCCCHHHHHHHHHH-HhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh
Confidence 66554322111111111 112334456788899999999999999999999999999999889983 333333222
Q ss_pred c-CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 226 D-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 226 ~-~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+ ..|++||+++.+.. +++ |++++.|+.++..
T Consensus 153 ~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 153 QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 2 35799999999875 544 7888888877764
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-27 Score=204.54 Aligned_cols=169 Identities=11% Similarity=0.037 Sum_probs=124.2
Q ss_pred ccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 53 GKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
.+.++.+.|+. ..++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.+++...
T Consensus 2 ~~~~~~~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSGLATL-----SNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCCCcce-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCccccccccccc
Confidence 35667777864 3445 888 9999999999999999999999999999999 9999999887532
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------------CCCCCCCCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSg 185 (287)
+..++|++|++..+ . .|+.+|+.+... . ..++..+.++.++. ..+.++..||+
T Consensus 74 ~~~~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~ 143 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLL-N--ATVEENITFGSP---F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSG 143 (218)
T ss_pred chhhcceEEEEcCCCccc-c--ccHHHHHhhcCc---C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCH
Confidence 13589999997543 3 588898865321 1 11122223332221 12356789999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHH------Hhhc---CceEEEeCHHHHH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS------SMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~------~~~~---~~i~vtHd~~~~~ 239 (287)
||+||++||++++.+|+++++|+++..||....+.+. .+.+ ..|++||+++.+.
T Consensus 144 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 144 GQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 9999999999999999999999999999994333222 2222 2469999999863
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-27 Score=203.52 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=122.4
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.+.++++.+.|.. +.++ +++ +.+++|++++|+|+||||||||+++|+|+++...|++|+|.++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il-----~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~ 77 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPIL-----KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77 (202)
T ss_pred eEEEEccEEEeccCCCCceee-----eeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc
Confidence 3556777777753 3455 888 99999999999999999999999999999861114799998887532
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++..++ .+|+.+|+.+..... .+.++..||+||+||+++|++++
T Consensus 78 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~---------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 78 AEKYPGEIIYVSEEDVHFP--TLTVRETLDFALRCK---------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred hhhhcceEEEEecccccCC--CCcHHHHHhhhhhhc---------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 235899999865444 379999987643210 45677899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc---Cc-eEEE-eCHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EK-WFIE-VDLDTAMQ 240 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~-i~vt-Hd~~~~~~ 240 (287)
.+|+++++|||+..+|. .+++.+.++.+ .. ++++ |+.+.+..
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~ 185 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYD 185 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH
Confidence 99999999999999998 45555665543 22 4544 55566654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-27 Score=232.44 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=147.8
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
..++++++++.|.. ..++ +++ +++++||.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL-----~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~ 407 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPAL-----DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQL 407 (576)
T ss_pred ceEEEEEEEEECCCCCCCccc-----cceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhc
Confidence 35789999999964 3456 888 9999999999999999999999999999999 9999999998543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCC
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFD 184 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lS 184 (287)
++.++|++|+++.+. .|+++|+.++ .+. .+.+++.+.++.++ .+.+. ....||
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~---~Ti~~Ni~~~-----~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFA---ASVMENIRYG-----RPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred CHHHHHHhceEEccCCcccc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 235999999987554 5899998653 221 12344444444433 22222 334799
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
|||+||+++|+++..+++++++||++.-+|+. +.+.+.++.+ ..|++||+++.... +++ |++++.|+.
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~ 558 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecH
Confidence 99999999999999999999999999999983 4445555532 34799999988766 555 899999998
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++.+
T Consensus 559 ~~l~~ 563 (576)
T TIGR02204 559 AELIA 563 (576)
T ss_pred HHHHH
Confidence 88654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-27 Score=233.57 Aligned_cols=191 Identities=15% Similarity=0.129 Sum_probs=144.4
Q ss_pred CCCccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 48 AQPVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
..++++++++++.|++ ..++ +++ +.+.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 505 ~~~~L~~~~ls~~y~~~~~il-----~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~~---~~ 573 (718)
T PLN03073 505 GPPIISFSDASFGYPGGPLLF-----KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSAK---VR 573 (718)
T ss_pred CCceEEEEeeEEEeCCCCeeE-----eccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECCc---ee
Confidence 4578999999999964 4466 888 9999999999999999999999999999999 99999987653 35
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++|++|+... .+++.++........ .+. ...+++.++|+.++.. .++++..||||||||++||++++.+|+
T Consensus 574 igyv~Q~~~~----~l~~~~~~~~~~~~~-~~~-~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~ 647 (718)
T PLN03073 574 MAVFSQHHVD----GLDLSSNPLLYMMRC-FPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 647 (718)
T ss_pred EEEEeccccc----cCCcchhHHHHHHHh-cCC-CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCC
Confidence 9999998521 244555543322111 111 2245677888888743 467888999999999999999999999
Q ss_pred EEEEcCcccCCChhhHHHH----HHhhcCceEEEeCHHHHHH---HHh----hccc-cCCChHHH
Q 023126 203 VVIVDGNYLFLDGGVWKDV----SSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDV 255 (287)
Q Consensus 203 ~li~d~~~lllDe~~~~~l----~~~~~~~i~vtHd~~~~~~---rv~----gr~v-~~G~~~ev 255 (287)
+|++|||+..||....+.+ .+.....|++|||++++.. |++ |+++ ..|+..+.
T Consensus 648 lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 648 ILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999998433333 3322345799999999876 443 6666 56766553
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-27 Score=230.06 Aligned_cols=190 Identities=17% Similarity=0.102 Sum_probs=145.1
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l-----~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~ 386 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTL-----RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWD 386 (544)
T ss_pred CeEEEEEEEEEcCCCCcccc-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCC
Confidence 35888999999954 4566 888 9999999999999999999999999999999 9999999988653
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHH---------HHHHHhccCCC----CCCCCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQGS----VYAPSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~---------~~l~~l~~~~~----~~~~~lSg 185 (287)
++.++|++|+++.+. .|+++|+.+.. +. ...+++. +.++.+..+.+ .....|||
T Consensus 387 ~~~~~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg 457 (544)
T TIGR01842 387 RETFGKHIGYLPQDVELFP---GTVAENIARFG-----EN-ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG 457 (544)
T ss_pred HHHHhhheEEecCCccccc---ccHHHHHhccC-----CC-CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCH
Confidence 345999999976553 48999987421 11 1122222 33333422222 34568999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhh---cCceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF---DEKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~---~~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||+||+++|+|+..+|+++++||++..+|. .+.+.+.++. ...|++||+++.... +++ |++++.|+.
T Consensus 458 Gq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~ 537 (544)
T TIGR01842 458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGER 537 (544)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCH
Confidence 999999999999999999999999999998 3445555553 234699999987655 544 888999988
Q ss_pred HHHH
Q 023126 253 PDVA 256 (287)
Q Consensus 253 ~ev~ 256 (287)
+++.
T Consensus 538 ~~l~ 541 (544)
T TIGR01842 538 DEVL 541 (544)
T ss_pred HHHh
Confidence 7764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-27 Score=222.00 Aligned_cols=190 Identities=14% Similarity=0.085 Sum_probs=153.0
Q ss_pred ccccCcccccccccc--hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKTSL--KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~--~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++|+++.|.+.. ++ +++ +.+++||.++|+|++|||||||++.|.|.+. |++|+|..+|.+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L-----~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYPGQQTKAL-----KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecCCCccchh-----hccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCCh
Confidence 889999999998764 77 888 9999999999999999999999999999999 9999999998653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---------CCC----CCCCCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~lSgG 186 (287)
+..+++++|....+. -|+++|+... .+.+ ..+.+.++++.++. +.+ ..-..||||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~---~Tlr~NL~lA-----~~~A-sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 408 QALRETISVLTQRVHLFS---GTLRDNLRLA-----NPDA-SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred hhHHHHHhhhccchHHHH---HHHHHHHhhc-----CCCC-CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 235788999865443 4888888653 2332 33455666666651 222 233489999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||+++|+++.+++.++++|||+..||. ++++.+.+..+ ..++|||++..+.. |++ |+++++|+..+
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHh
Confidence 99999999999999999999999999998 45555555554 35799999999888 766 99999999999
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 559 Ll~ 561 (573)
T COG4987 559 LLA 561 (573)
T ss_pred hhc
Confidence 876
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-27 Score=204.94 Aligned_cols=184 Identities=16% Similarity=0.050 Sum_probs=141.4
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc-------eeEEE-eCCCCCCCcccCCc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD-------VATVL-PMDGFHLYLSQLDA 143 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~-------~i~~v-~qd~~~~~~~~ltv 143 (287)
+++ |.|.+|+++|++|+|||||||++|+|.|++. |++|.|.++|..+.+ .++++ .|-...++. +.+
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd--lp~ 115 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD--LPA 115 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee--chh
Confidence 666 9999999999999999999999999999999 999999999976533 13333 333222232 345
Q ss_pred cccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHH
Q 023126 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l 221 (287)
.+.+......|..+.+.-.++...+-+.++. ..+.++..||-|||+|+.+|++|++++++|++||+++.||-.....+
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 5555555666766655545555555555553 46778889999999999999999999999999999999998555555
Q ss_pred HHhhc-------C-ceEEEeCHHHHHH---HHh----hccccCCChHHHHHHHHH
Q 023126 222 SSMFD-------E-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 222 ~~~~~-------~-~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~~~ 261 (287)
+++.. . +++.||+++.+.. |++ |+++.+|+..++.++|..
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP 250 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCC
Confidence 54443 2 3589999999888 665 999999999988777644
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-27 Score=230.85 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=145.6
Q ss_pred CccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
..++++++++.|++ ..++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 333 ~~i~~~~v~~~y~~~~~~l-----~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~ 404 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGV-----FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTR 404 (585)
T ss_pred CeEEEEEEEEECCCCCccc-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCH
Confidence 35889999999975 4455 888 9999999999999999999999999999999 9999999988643
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------HhccC----CCCCCCCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQ----GSVYAPSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~----~~~~~~~lSgG 186 (287)
++.++|++|+++.+. .|+++|+.++. +.. ..+.+.+.++ .+..+ .......||||
T Consensus 405 ~~~~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~~-~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFN---RSIRENIRLGR-----EGA-TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred HHHHhheEEEccCCccCc---ccHHHHHhcCC-----CCC-CHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 245899999976543 58999987532 111 1222222222 22111 22345589999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||+++|++++.+|+++++||++..+|.+ +++.+.+... ..|++||+++.+.. +++ |++++.|+.++
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999994 4444444432 34799999998865 554 88889999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+.+
T Consensus 556 l~~ 558 (585)
T TIGR01192 556 LIQ 558 (585)
T ss_pred HHH
Confidence 764
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-27 Score=236.28 Aligned_cols=191 Identities=14% Similarity=0.142 Sum_probs=148.2
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.+++++++++|+. +.++ +++ +.+++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 455 ~i~~~~vsf~y~~~~~~il-----~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVL-----SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADP 526 (694)
T ss_pred eEEEEEEEEEcCCCCcccc-----ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCH
Confidence 5888999999963 3456 888 9999999999999999999999999999999 99999999987542
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCC----CCCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lSgG 186 (287)
+.++|++|+++.+. .|++||+.+. .+. ...+.+.++++..+ .+.+ .....||||
T Consensus 527 ~~~r~~i~~v~q~~~lf~---~ti~eNi~~~-----~~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFS---RSIRDNIALC-----NPG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred HHHHHhCeEEccCCeehh---hhHHHHHhcC-----CCC-CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 45899999977554 5899998753 121 12333333333322 2223 234589999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||+++|+|++.+|+++++||++..+|+ .+.+.+.+... ..|++||+++.+.. +++ |++++.|+.++
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999998 34455555432 34799999998876 555 89999999988
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
++..
T Consensus 678 l~~~ 681 (694)
T TIGR01846 678 LLAL 681 (694)
T ss_pred HHHc
Confidence 7643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-27 Score=221.79 Aligned_cols=189 Identities=13% Similarity=0.091 Sum_probs=150.7
Q ss_pred ccccCcccccccccc-hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKTSL-KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
.++++++.+.|++.. ++ +++ ++|++||.|||+|+|||||||++|+|.+++ -++|+|.++|.+.
T Consensus 351 ~I~F~dV~f~y~~k~~iL-----~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~ 421 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVL-----KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLE 421 (591)
T ss_pred cEEEEeeEEEeCCCCcee-----cceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChH
Confidence 488999999999876 78 999 999999999999999999999999999998 4899999999764
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cC----CCCCCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~lSgG~ 187 (287)
++.|||+|||...+. -|+..|+.++ .+... .+++.+..++.+ .+ ...+-..|||||
T Consensus 422 SlR~~Ig~VPQd~~LFn---dTIl~NI~YG-----n~sas-~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGe 492 (591)
T KOG0057|consen 422 SLRQSIGVVPQDSVLFN---DTILYNIKYG-----NPSAS-DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGE 492 (591)
T ss_pred HhhhheeEeCCcccccc---hhHHHHhhcC-----CCCcC-HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccch
Confidence 455999999976444 3888888753 44332 233344444333 22 223455899999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||+++++|++.+|.++++||.+.-||. ++++.+.+... +.|+|-|+++.+.. +++ |++.+.|+..|+
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~el 572 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSEL 572 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHH
Confidence 9999999999999999999999999997 45555555332 35799999999998 665 899999999998
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
+.
T Consensus 573 l~ 574 (591)
T KOG0057|consen 573 LA 574 (591)
T ss_pred hh
Confidence 76
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-27 Score=229.34 Aligned_cols=190 Identities=12% Similarity=0.137 Sum_probs=145.4
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++.|.. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l-----~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~ 384 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPAL-----ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQL 384 (569)
T ss_pred cEEEEEEEEECCCCCCccc-----cCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCH
Confidence 4778899998864 3456 888 9999999999999999999999999999999 9999999988653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCC----CCCCCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lSgG 186 (287)
++.++|++|+++.+. .|+++|+.++. +. ...+.+.+.++..+ .+.+ .....||||
T Consensus 385 ~~~~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgG 455 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFS---DTVANNIALGR-----PD-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGG 455 (569)
T ss_pred HHHHhheEEEccCCeecc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHH
Confidence 245899999976543 48999987532 11 12233333333322 1222 334589999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||+++|++++.+|+++++||++..+|.+ +++.++++.. ..|++||+++.... +++ |++++.|+.++
T Consensus 456 q~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 456 QKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHH
Confidence 999999999999999999999999999983 4445555432 34699999988766 554 89999999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+.+
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 754
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-27 Score=195.69 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=104.6
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~ 130 (287)
++++++++.|+.+.++ +++ +.+++||+++|+|+||||||||+++|+|+++ |++|+|.+++.....
T Consensus 1 l~~~~l~~~~~~~~vl-----~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~------ 66 (163)
T cd03216 1 LELRGITKRFGGVKAL-----DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSF------ 66 (163)
T ss_pred CEEEEEEEEECCeEEE-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCc------
Confidence 3567889999877666 888 9999999999999999999999999999999 999998877632100
Q ss_pred CCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcc
Q 023126 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (287)
Q Consensus 131 qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~ 210 (287)
.+..+ .... .++ ++++||+||+||+++|++++.+|+++++|||+
T Consensus 67 ----------~~~~~---~~~~------------------~i~-----~~~qLS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 67 ----------ASPRD---ARRA------------------GIA-----MVYQLSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred ----------CCHHH---HHhc------------------CeE-----EEEecCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 00000 0000 000 01119999999999999999999999999999
Q ss_pred cCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 211 LFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 211 lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
..+|. .+++.++++.. ..|++|||++.+..
T Consensus 111 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 111 AALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99998 34445544432 24689999997754
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=207.14 Aligned_cols=189 Identities=10% Similarity=0.104 Sum_probs=136.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
...+.++++++++. .+.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++| .
T Consensus 35 ~~~~~l~i~nls~~--~~~vL-----~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~ 99 (282)
T cd03291 35 SDDNNLFFSNLCLV--GAPVL-----KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----R 99 (282)
T ss_pred CCCCeEEEEEEEEe--cccce-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----E
Confidence 44567888999885 34455 888 9999999999999999999999999999999 9999999876 3
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHH------HHHHHHHhcc----CCCCCCCCCCcccCCchhhhh
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL------LLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~------~~~~l~~l~~----~~~~~~~~lSgG~~qrv~ia~ 195 (287)
++|++|++..+ + .|+.+|+.+.... . ...... +.+.+..+.. ..+..+..||+||+||+++|+
T Consensus 100 i~yv~q~~~l~-~--~tv~enl~~~~~~---~-~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAr 172 (282)
T cd03291 100 ISFSSQFSWIM-P--GTIKENIIFGVSY---D-EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLAR 172 (282)
T ss_pred EEEEeCccccc-c--cCHHHHhhccccc---C-HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHH
Confidence 89999996533 2 4888888653211 0 001011 1112222211 112345699999999999999
Q ss_pred hhccCccEEEEcCcccCCChhhHHHHH-----Hhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~~~~~l~-----~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|+++++|+|+..||....+.+. .+.. .++++||+++.+.. +++ |++++.|+++++..
T Consensus 173 aL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 173 AVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999984333332 2221 24699999998754 443 78888888877643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=191.37 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=138.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV---- 125 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~---- 125 (287)
+++.++++...+.+..+ .++ |++.+||.+-|.||||||||||+++|+|+++ |++|+|.+.+......
T Consensus 2 ~L~a~~L~~~R~e~~lf-----~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 2 MLEAENLSCERGERTLF-----SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESY 73 (209)
T ss_pred cchhhhhhhccCcceee-----cceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhH
Confidence 56788999999999998 999 9999999999999999999999999999999 9999999987654221
Q ss_pred ---eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 126 ---ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 126 ---i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.-|+.-.+- ..+++|++||+.|....++. ...+.+.++++.++ ...+.++.+||-|||+|+++|+..+.+
T Consensus 74 ~~~l~yLGH~~g--iK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 74 HQALLYLGHQPG--IKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred HHHHHHhhcccc--ccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCC
Confidence 334432222 23459999999998887764 23456778888888 567889999999999999999999999
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhc----C---ceEEEeCHHH
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFD----E---KWFIEVDLDT 237 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~----~---~i~vtHd~~~ 237 (287)
+.++|+||++.-+|.+-...+..++. . ++..||..--
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999854444444432 2 2466776543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-26 Score=248.08 Aligned_cols=190 Identities=15% Similarity=0.172 Sum_probs=152.7
Q ss_pred CccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 50 PVFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..+++++++++|.+. .++ +++ ++|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+..
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL-----~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVL-----HGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFG 1307 (1622)
T ss_pred CcEEEEEEEEEeCCCCCcee-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCC
Confidence 368999999999653 466 888 9999999999999999999999999999999 99999999997643
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDH 185 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSg 185 (287)
+.++++|||++.+. -|+++|+.... ....+.+.++++..+ .+.+..+ ..|||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~---GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFS---GTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred HHHHHhccEEECCCCcccc---ccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence 45999999987654 49999986431 123344445544432 2334333 37999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||++||+|++.++++|++||.+.-+|. .+++.+++.+. ++|+|+|.++.+.. |++ |++++.|+++
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~ 1457 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPE 1457 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999998 45555665553 34799999999988 666 9999999999
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++++
T Consensus 1458 eLl~ 1461 (1622)
T PLN03130 1458 NLLS 1461 (1622)
T ss_pred HHHh
Confidence 9875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-26 Score=248.12 Aligned_cols=189 Identities=14% Similarity=0.166 Sum_probs=151.3
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+++++++++|.+ ..++ +++ +.+++||.+||+|+||||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL-----~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~ 1305 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVL-----HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGL 1305 (1495)
T ss_pred cEEEEEEEEEECCCCCccc-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCH
Confidence 5889999999954 3566 888 9999999999999999999999999999999 9999999999764
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCC----CCCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~lSgG 186 (287)
++.++++|||++.+. -|+++|+.... ....+.+.++++..+ .+.+.. -..||||
T Consensus 1306 ~~lR~~i~iVpQdp~LF~---gTIr~NL~~~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgG 1375 (1495)
T PLN03232 1306 TDLRRVLSIIPQSPVLFS---GTVRFNIDPFS-------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVG 1375 (1495)
T ss_pred HHHHhhcEEECCCCeeeC---ccHHHHcCCCC-------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHH
Confidence 345999999987654 49999986421 123344445554432 233332 3479999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||++||+|++.++++|++||.+.-+|. .+.+.+++.++ ++|+|+|.++.+.. |++ |++++.|++++
T Consensus 1376 QrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999998 34455555543 34799999999988 665 99999999999
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+++
T Consensus 1456 Ll~ 1458 (1495)
T PLN03232 1456 LLS 1458 (1495)
T ss_pred HHh
Confidence 875
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-26 Score=193.18 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=105.5
Q ss_pred CcccccccccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCC
Q 023126 55 TRSLVQNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 134 (287)
Q Consensus 55 ~~~~~~~~~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~ 134 (287)
.++++.|++..++ ++++.+++|++++|+||||||||||+++|+|+++ |++|+|.+++. .++|++|+..
T Consensus 4 ~~l~~~~~~~~~l-----~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~----~i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRYGVFFLL-----VELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGI----TPVYKPQYID 71 (177)
T ss_pred CCeEEEECCEEEE-----ccCcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCE----EEEEEcccCC
Confidence 4778889887666 6678999999999999999999999999999999 99999998763 2677766421
Q ss_pred CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCC
Q 023126 135 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (287)
Q Consensus 135 ~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllD 214 (287)
||+||+||+++|++++.+++++++||++..+|
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred hh----hHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 215 GG----VWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 215 e~----~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.. +.+.+.++.. ..+++||+++.+..
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 83 3444444432 24699999999875
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-26 Score=187.36 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=106.9
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeC
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 131 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~q 131 (287)
+++++++.|+....+ +++ +.+++||+++|+|+||||||||+++|+|+++ |++|+|.+++. ..++|++|
T Consensus 2 ~~~~l~~~~~~~~~l-----~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~~ 70 (144)
T cd03221 2 ELENLSKTYGGKLLL-----KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST---VKIGYFEQ 70 (144)
T ss_pred EEEEEEEEECCceEE-----EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe---EEEEEEcc
Confidence 567888888776566 888 9999999999999999999999999999999 99999988774 34777766
Q ss_pred CCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCccc
Q 023126 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (287)
Q Consensus 132 d~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~l 211 (287)
||+||+||+++|++++.+|+++++|+++.
T Consensus 71 ---------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 71 ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999999999999999999999999999
Q ss_pred CCChh----hHHHHHHhhcCceEEEeCHHHHHH
Q 023126 212 FLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 212 llDe~----~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
.+|.. +++.++++....+++||+++++..
T Consensus 100 ~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~ 132 (144)
T cd03221 100 HLDLESIEALEEALKEYPGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 99984 344444443335699999998754
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-26 Score=232.62 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=171.9
Q ss_pred CccccCcccccccccc-hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNKTSL-KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
..+.+.++++.|+.+. ++ +++ +.|++||+.|+.|+|||||||++++|.|..+ |++|+++++|.+.
T Consensus 563 ~~~~~~~L~k~y~~~~~Av-----~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAV-----RGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecchhhhh-----cceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccc
Confidence 4667788999999887 66 788 9999999999999999999999999999999 9999998877543
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.+||+||.+..+. .+|.+|++.+..+..|.+.....+.++..++.++ ...+++++.||||+|+|+++|.|
T Consensus 635 ~~~~~~~iGyCPQ~d~l~~--~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 635 FQQVRKQLGYCPQFDALWE--ELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred hhhhhhhcccCCchhhhhh--hccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHH
Confidence 234999999966444 4999999999999999887666667788888888 56678899999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|.++++|+|...+|+ .+|..+.+..+. .|+.||.|+++.. |+. |+..+-|.++++..
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999998 788888888763 4689999999988 665 89999999998763
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-26 Score=217.51 Aligned_cols=178 Identities=12% Similarity=0.001 Sum_probs=139.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEE
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 128 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~ 128 (287)
.++.++++++.|+.+..+ +++ +.+.+|+++||||+||||||||+|+|+|.+. |++|+|...+. ..++|
T Consensus 2 ~~i~~~~ls~~~g~~~l~-----~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~---~~v~~ 70 (530)
T COG0488 2 SMITLENLSLAYGDRPLL-----ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG---LRVGY 70 (530)
T ss_pred ceEEEeeeEEeeCCceee-----cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC---ceEEE
Confidence 467889999999999999 999 9999999999999999999999999999999 99999987654 24999
Q ss_pred EeCCCCCCCcccCCccccHHHHHHh-----------cC-------------------CCCCchHHHHHHHHHHhccCC-C
Q 023126 129 LPMDGFHLYLSQLDAMEDPKEAHAR-----------RG-------------------APWTFNPLLLLNCLKNLRNQG-S 177 (287)
Q Consensus 129 v~qd~~~~~~~~ltv~e~i~~~~~~-----------~~-------------------~~~~~~~~~~~~~l~~l~~~~-~ 177 (287)
++|++..... .|+.+.+...... +. ........++..+|..++... +
T Consensus 71 l~Q~~~~~~~--~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~ 148 (530)
T COG0488 71 LSQEPPLDPE--KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED 148 (530)
T ss_pred eCCCCCcCCC--ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence 9999764432 5776655432110 00 000111234556666666333 7
Q ss_pred CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh----cCceEEEeCHHHHHH
Q 023126 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 178 ~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~----~~~i~vtHd~~~~~~ 240 (287)
+++.+||||||.|+++|.++..+|++|++|||+-=||-+....|.+.+ ...|+||||.++.-.
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~ 215 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN 215 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence 889999999999999999999999999999999999987666666654 336799999999877
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-26 Score=202.65 Aligned_cols=179 Identities=15% Similarity=0.056 Sum_probs=129.2
Q ss_pred Cccccccccc-chhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc-----------cCCCCC
Q 023126 55 TRSLVQNKTS-LKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKP 122 (287)
Q Consensus 55 ~~~~~~~~~~-~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~-----------~~~~~~ 122 (287)
.+++++|+.. .++ +++..+++|++++|+||||||||||+++|+|+++ |++|+|. ++|...
T Consensus 4 ~~~~~~y~~~~~~l-----~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~ 75 (255)
T cd03236 4 DEPVHRYGPNSFKL-----HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSEL 75 (255)
T ss_pred cCcceeecCcchhh-----hcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchh
Confidence 3677888764 355 6674489999999999999999999999999999 9999995 555432
Q ss_pred C----------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCc
Q 023126 123 P----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 ~----------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qr 190 (287)
. ..+++++|.....+ .++.+++.+.. ......+.+.++++.++. ..+..+..||+||+||
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 147 (255)
T cd03236 76 QNYFTKLLEGDVKVIVKPQYVDLIP---KAVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR 147 (255)
T ss_pred hhhhHHhhhcccceeeecchhccCc---hHHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 1 12566666533221 24455554431 112234566788888773 3466778999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh---hccccC
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL---KRHIST 249 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~---gr~v~~ 249 (287)
+++|++++.+|+++++|+++..+|.. +.+.++++.+ ..|++|||++.+.. +++ |++.+.
T Consensus 148 v~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~ 219 (255)
T cd03236 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAY 219 (255)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCCCCcc
Confidence 99999999999999999999999993 4455555433 24699999998875 333 555553
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-26 Score=221.05 Aligned_cols=172 Identities=18% Similarity=0.150 Sum_probs=133.1
Q ss_pred ccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.+++++++++|.+. .++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 320 ~i~~~~v~f~y~~~~~~il-----~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPAL-----RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADA 391 (529)
T ss_pred eEEEEEEEEECCCCCcccc-----cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCH
Confidence 58899999999753 456 888 9999999999999999999999999999999 99999999987532
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG 186 (287)
+.++|++|+++.+. .|++||+.++. +. ...+.+.+.++..+ .+.+. ....||||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFA---GTIAENIRLAR-----PD-ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred HHHHhheEEEcCCCcccC---cCHHHHHhccC-----CC-CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 35999999986553 59999997642 11 12233444444332 22232 34589999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAM 239 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~ 239 (287)
||||+++|++++.+|+++++||++..+|++ +.+.+.+... ..|++||+++...
T Consensus 463 q~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 463 QAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE 521 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 999999999999999999999999999994 3444444432 3479999998764
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-26 Score=244.08 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=150.8
Q ss_pred ccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+++++++++|.+. .++ +++ +.|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL-----~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l 1379 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVL-----RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGL 1379 (1560)
T ss_pred eEEEEEEEEEeCCCCCcee-----ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCH
Confidence 58899999999653 356 888 9999999999999999999999999999999 9999999999764
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG 186 (287)
++.++++|||++.+. -|+++|+... + ....+.+.++++..+ .+.+..+ ..||||
T Consensus 1380 ~~LR~~I~iVpQdp~LF~---gTIreNIdp~----~---~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgG 1449 (1560)
T PTZ00243 1380 RELRRQFSMIPQDPVLFD---GTVRQNVDPF----L---EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVG 1449 (1560)
T ss_pred HHHHhcceEECCCCcccc---ccHHHHhCcc----c---CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHH
Confidence 345999999987554 4999999531 1 223445555555543 2233333 479999
Q ss_pred cCCchhhhhhhccC-ccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQ-HKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~-a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
||||++||+|++.+ +++|++||.+.-+|.+ +.+.|++.++ ++|+|+|.++.+.. +++ |++++.|+++
T Consensus 1450 QrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1450 QRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPR 1529 (1560)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999985 8999999999999984 4444555443 34799999999988 665 8999999999
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
+++.
T Consensus 1530 eLl~ 1533 (1560)
T PTZ00243 1530 ELVM 1533 (1560)
T ss_pred HHHh
Confidence 9875
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-26 Score=243.57 Aligned_cols=191 Identities=16% Similarity=0.157 Sum_probs=152.6
Q ss_pred CccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++|... .++ +++ +.+++||.+||+|++|||||||+++|.++++ |++|+|.++|.+.
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL-----~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVL-----RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccc-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccC
Confidence 468899999999753 456 888 9999999999999999999999999999999 9999999999764
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSg 185 (287)
++.++++|||++.+. -|+++|+... + ....+.+.++++..+ .+.+..+ ..|||
T Consensus 1355 ~~~LR~~i~iVpQdp~LF~---gTIr~NLdp~----~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957 1355 LHDLRFKITIIPQDPVLFS---GSLRMNLDPF----S---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred HHHHHhcCeEECCCCcccC---ccHHHHcCcc----c---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence 345999999987654 3899998521 1 123344445554433 2334333 47999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.++++|++||.+.-+|. .+.+.+++.+. ++|+|+|.++.+.. |++ |++++.|+++
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999998 34555555543 34799999999988 666 9999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
++++.
T Consensus 1505 eLl~~ 1509 (1522)
T TIGR00957 1505 NLLQQ 1509 (1522)
T ss_pred HHHhC
Confidence 98753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-26 Score=184.91 Aligned_cols=180 Identities=14% Similarity=0.068 Sum_probs=139.9
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
+.+++++.+.+++-.+ -++ ++|.+|||+.|+||||||||||+.-+.|.+...+--+|++.+++... .+
T Consensus 3 l~l~nvsl~l~g~cLL-----a~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 3 LCLKNVSLRLPGSCLL-----ANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred eeeeeeeecCCCceEE-----EeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 4567778777777777 777 99999999999999999999999999999982222379999888642 45
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.+|+++||+..++ +++|.+|+.+..... .........+...|++.+ ...++.+.++|||||.|+++.+++...|+
T Consensus 78 q~GiLFQD~lLFp--hlsVg~Nl~fAlp~~-~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 78 QIGILFQDALLFP--HLSVGQNLLFALPAT-LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred heeeeeccccccc--ccccccceEEecCcc-cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 6999999987655 499999998754321 112223445677888888 34467788999999999999999999999
Q ss_pred EEEEcCcccCCChhhHHHHHHhhc--------CceEEEeCHHHHH
Q 023126 203 VVIVDGNYLFLDGGVWKDVSSMFD--------EKWFIEVDLDTAM 239 (287)
Q Consensus 203 ~li~d~~~lllDe~~~~~l~~~~~--------~~i~vtHd~~~~~ 239 (287)
++++|+++.-||..+....++..- -++.||||.+.+.
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 999999999999755555554421 2479999998875
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-26 Score=223.42 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=135.4
Q ss_pred ccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 51 VFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
.+++++++++|.+ ..++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 322 ~i~~~~v~f~y~~~~~~l-----~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~ 393 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSV-----GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPE 393 (547)
T ss_pred eEEEEEEEEEeCCCCeEE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHH
Confidence 5889999999964 3456 888 9999999999999999999999999999999 99999999886532
Q ss_pred ---ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCC-------CCCCCCcccCCchhh
Q 023126 124 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV-------YAPSFDHGVGDPVED 193 (287)
Q Consensus 124 ---~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~lSgG~~qrv~i 193 (287)
+.++|++|+++.+. .|+.+| + ...+.+.+.+.++.++..... .-..|||||+||+++
T Consensus 394 ~~~~~i~~v~q~~~lf~---~ti~~n--------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 394 DYRKLFSAVFTDFHLFD---QLLGPE--------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLAL 460 (547)
T ss_pred HHhhheEEEecChhHHH---Hhhccc--------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHH
Confidence 45999999976443 356555 1 122344566667666532211 124899999999999
Q ss_pred hhhhccCccEEEEcCcccCCChhh----HHHHHHhh---c-CceEEEeCHHHHHH--HHh----hccccC
Q 023126 194 DILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHIST 249 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe~~----~~~l~~~~---~-~~i~vtHd~~~~~~--rv~----gr~v~~ 249 (287)
|++++.+|+++++||++..+|.+. .+.+.+.. + ..|++||+++.... +++ |++++.
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999843 33444332 2 35799999987655 444 666654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-26 Score=230.10 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=150.5
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------- 123 (287)
++++++.+.|..|.-+ .+.++. +.+++|+.+||+|||||||||.+.+|-.+|. |++|.|.++|.+.+
T Consensus 988 I~~~~V~F~YPsRP~~--~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDV--PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEeeeEeeCCCCCCc--hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 6778888888876544 334888 9999999999999999999999999999999 99999999997753
Q ss_pred -ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------HhccCCCCCCC----CCCcccCC
Q 023126 124 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVYAP----SFDHGVGD 189 (287)
Q Consensus 124 -~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~~~~----~lSgG~~q 189 (287)
+.+++|.|+|..+. -|++||+.++.. .. ..+.+.++++ .+-.+.+..+. +|||||||
T Consensus 1063 R~~i~lVsQEP~LF~---~TIrENI~YG~~--~v----s~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFN---GTIRENIAYGSE--EV----SEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQ 1133 (1228)
T ss_pred HHhcceeccCchhhc---ccHHHHHhccCC--CC----CHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHH
Confidence 45999999987554 599999998711 12 2333333332 22344555444 99999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc------CceEEEeCHHHHHH-HHh-----hccccCCChHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ-RVL-----KRHISTGKPPDVAK 257 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~------~~i~vtHd~~~~~~-rv~-----gr~v~~G~~~ev~~ 257 (287)
|+|||+|++.+|++|++||-+..||-+--+.+++.++ ++|+|.|-+..+.. .++ |+++|+|+-++++.
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999999999844444444443 35899999999988 333 89999999999876
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-26 Score=245.10 Aligned_cols=206 Identities=14% Similarity=0.097 Sum_probs=154.0
Q ss_pred CCccccCccccccc----ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 49 QPVFGKTRSLVQNK----TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
..+++.+++++.++ .+.++ +++ +.+++|+++||+||||||||||+++|+|+++...|++|+|.++|.+.
T Consensus 757 ~~~l~~~nl~~~~~~~~~~~~iL-----~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~ 831 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIKKEKRVIL-----NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831 (1394)
T ss_pred CceEEEEeeEEEecCCCCCcEee-----eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 34578889888885 34556 888 99999999999999999999999999999852125789999988653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcC---CCCCchHHHHHHHHHHhcc--CCCCCCC----CCCcccCCc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRN--QGSVYAP----SFDHGVGDP 190 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~---~~~~~~~~~~~~~l~~l~~--~~~~~~~----~lSgG~~qr 190 (287)
++.++|++|++..++ .+|++|++.+....+. .+..+..+++.++++.++. ..+..+. .||||||||
T Consensus 832 ~~~~~~i~yv~Q~~~~~~--~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqR 909 (1394)
T TIGR00956 832 SSFQRSIGYVQQQDLHLP--TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR 909 (1394)
T ss_pred hhhhcceeeecccccCCC--CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhH
Confidence 346899999876444 3899999998765432 1112234567788887773 3455554 799999999
Q ss_pred hhhhhhhccCcc-EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHH-H---HHh----h-ccccCCChH
Q 023126 191 VEDDILVGLQHK-VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM-Q---RVL----K-RHISTGKPP 253 (287)
Q Consensus 191 v~ia~al~~~a~-~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~-~---rv~----g-r~v~~G~~~ 253 (287)
++||++++.+|+ +|++||++..||. .+++.|+++.+ .+|+++|+++... . +++ | ++++.|++.
T Consensus 910 l~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 910 LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999999999997 9999999999998 45556666543 2468999998642 2 444 5 888888874
Q ss_pred H---HHHHHHH
Q 023126 254 D---VAKWRIE 261 (287)
Q Consensus 254 e---v~~~~~~ 261 (287)
+ -+..|+.
T Consensus 990 ~~~~~~~~yf~ 1000 (1394)
T TIGR00956 990 ENSHTIINYFE 1000 (1394)
T ss_pred cccchHHHHHH
Confidence 3 2345554
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-26 Score=242.13 Aligned_cols=190 Identities=12% Similarity=0.127 Sum_probs=147.3
Q ss_pred ccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----------------
Q 023126 51 VFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP---------------- 110 (287)
Q Consensus 51 ~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p---------------- 110 (287)
-+++++++++|.++ .++ +++ +.+++|+.+||+||||||||||+++|.|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL-----~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~ 1236 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIY-----KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDM 1236 (1466)
T ss_pred eEEEEEEEEECCCCCCCccc-----cCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccc
Confidence 48899999999643 455 888 9999999999999999999999999999999 8
Q ss_pred --------------------------------------CCcccccCCCCC--------CceeEEEeCCCCCCCcccCCcc
Q 023126 111 --------------------------------------QKASSFDSQVKP--------PDVATVLPMDGFHLYLSQLDAM 144 (287)
Q Consensus 111 --------------------------------------~~G~i~~~~~~~--------~~~i~~v~qd~~~~~~~~ltv~ 144 (287)
++|+|.++|.+. ++.++||+|+++.+. .|++
T Consensus 1237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~---gTIr 1313 (1466)
T PTZ00265 1237 TNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN---MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc---ccHH
Confidence 699999999764 345999999987654 6999
Q ss_pred ccHHHHHHhcCCCCCchHHHHHHHHHH---------hccCCCCCC----CCCCcccCCchhhhhhhccCccEEEEcCccc
Q 023126 145 EDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (287)
Q Consensus 145 e~i~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~~~~~----~~lSgG~~qrv~ia~al~~~a~~li~d~~~l 211 (287)
||+.++. +.. ..+.+.++++. +.++.+..+ ..||||||||++||+|++.+|++|++||++.
T Consensus 1314 eNI~~g~-----~~a-t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTS 1387 (1466)
T PTZ00265 1314 ENIKFGK-----EDA-TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATS 1387 (1466)
T ss_pred HHHhcCC-----CCC-CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 9998752 211 22333333332 323344433 3799999999999999999999999999999
Q ss_pred CCCh----hhHHHHHHhh---c-CceEEEeCHHHHHH--HHh--------hccc-cCCChHHHHH
Q 023126 212 FLDG----GVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL--------KRHI-STGKPPDVAK 257 (287)
Q Consensus 212 llDe----~~~~~l~~~~---~-~~i~vtHd~~~~~~--rv~--------gr~v-~~G~~~ev~~ 257 (287)
-||. .+.+.|.+.. + ++|+|+|.+..+.. +++ |+++ +.|+.+|++.
T Consensus 1388 aLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1388 SLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9998 3455555552 2 35799999999877 443 3545 7899998864
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=222.63 Aligned_cols=186 Identities=13% Similarity=0.100 Sum_probs=144.5
Q ss_pred ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CcccccCCCCC-----CceeEEEeCCC
Q 023126 63 TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDG 133 (287)
Q Consensus 63 ~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~---~G~i~~~~~~~-----~~~i~~v~qd~ 133 (287)
.+.++ +++ +.+++||+++|+||||||||||+++|+|..+ |+ +|+|.++|... ++.++|++|++
T Consensus 37 ~~~iL-----~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~ 108 (617)
T TIGR00955 37 RKHLL-----KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDD 108 (617)
T ss_pred ccccc-----cCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhceeecccc
Confidence 45566 888 9999999999999999999999999999987 75 79999988653 34589999997
Q ss_pred CCCCcccCCccccHHHHHHhcCC---CCCchHHHHHHHHHHhcc--CCCCCCC------CCCcccCCchhhhhhhccCcc
Q 023126 134 FHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRN--QGSVYAP------SFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 134 ~~~~~~~ltv~e~i~~~~~~~~~---~~~~~~~~~~~~l~~l~~--~~~~~~~------~lSgG~~qrv~ia~al~~~a~ 202 (287)
..++ .+||+||+.+....... ...+..+++.++++.++. ..+..+. .||||||||+++|++++.+|+
T Consensus 109 ~~~~--~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~ 186 (617)
T TIGR00955 109 LFIP--TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPP 186 (617)
T ss_pred ccCc--cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC
Confidence 6544 38999999987654321 112234467888888773 3455544 599999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHH-HHHH---HHh----hccccCCChHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLD-TAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~-~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
++++|+++..||. .+++.++++.+ ..|+++|++. .+.. +++ |+++..|++.++...
T Consensus 187 vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~ 257 (617)
T TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPF 257 (617)
T ss_pred EEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHH
Confidence 9999999999999 45555555543 2468899985 4444 554 899999998887543
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-26 Score=225.35 Aligned_cols=177 Identities=10% Similarity=-0.017 Sum_probs=134.6
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
..++++++++.|. ++.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|++.+++ +..++
T Consensus 450 ~~i~~~nv~~~~~~~~~il-----~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~ 518 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLI-----ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLF 518 (659)
T ss_pred CeEEEEeeEEECCCCCeee-----ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEE
Confidence 4688999999984 44566 888 9999999999999999999999999999999 9999988764 34599
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhccC--CCC---------CCCCCCcccCCchhhhh
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ--GSV---------YAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~~--~~~---------~~~~lSgG~~qrv~ia~ 195 (287)
|++|+++... .|+++|+.++....+.. .....+++.++++.++.. .+. ....||||||||+++|+
T Consensus 519 ~v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 519 YVPQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred EECCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 9999976433 39999987643221111 112344566677666521 111 23589999999999999
Q ss_pred hhccCccEEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+++.+|+++++||++..+|.+..+.+.+... ..|++||+++.+..
T Consensus 596 al~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 596 LFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKY 644 (659)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHh
Confidence 9999999999999999999955444444432 35799999998643
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-26 Score=240.55 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=135.6
Q ss_pred ccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC-CCCC---
Q 023126 51 VFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~-~~~~--- 122 (287)
-++++++++.|+.+ .++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++ +.+.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL-----~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~ 453 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIY-----KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDI 453 (1466)
T ss_pred cEEEEEEEEEcCCCCCCcee-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhC
Confidence 58899999999854 355 888 9999999999999999999999999999999 999999994 4432
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhc----------CC-------------------------------
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----------GA------------------------------- 156 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----------~~------------------------------- 156 (287)
++.++|++|++..+. .|+++|+.++.... ..
T Consensus 454 ~~~~lr~~Ig~V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 454 NLKWWRSKIGVVSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred CHHHHHHhccEecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 235899999976543 59999998753100 00
Q ss_pred ----------CCCchHHHHHHHHHHhc---------cC----CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCC
Q 023126 157 ----------PWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213 (287)
Q Consensus 157 ----------~~~~~~~~~~~~l~~l~---------~~----~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lll 213 (287)
......+.+.++++.++ .+ .......||||||||++||+|++.+|++|++||++..|
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaL 610 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSL 610 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 00112234555544443 11 13456699999999999999999999999999999999
Q ss_pred Ch----hhHHHHHHhh----cCceEEEeCHHHHHH
Q 023126 214 DG----GVWKDVSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 De----~~~~~l~~~~----~~~i~vtHd~~~~~~ 240 (287)
|. .+++.+.++. ..+|+++|+++.+..
T Consensus 611 D~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~ 645 (1466)
T PTZ00265 611 DNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRY 645 (1466)
T ss_pred CHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHh
Confidence 98 4555555553 235799999998755
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-25 Score=214.12 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=142.7
Q ss_pred CCCCccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc
Q 023126 47 NAQPVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 124 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~ 124 (287)
.+.++++++++++.|++ +.++ +++ +.|.+|+.+||+||||+|||||+|+|+|.+. |.+|+|.++...
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~-----~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~v--- 385 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLL-----KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGETV--- 385 (530)
T ss_pred CCCeeEEEeccccccCCCceee-----cCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCce---
Confidence 78899999999999976 4777 888 9999999999999999999999999999999 999999887653
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
.++|+.|+...+. +..|+.+++... .+. .....+...|..++ ....+++..||||||.|+.+|..+..+|
T Consensus 386 ~igyf~Q~~~~l~-~~~t~~d~l~~~-----~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~p 458 (530)
T COG0488 386 KIGYFDQHRDELD-PDKTVLEELSEG-----FPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPP 458 (530)
T ss_pred EEEEEEehhhhcC-ccCcHHHHHHhh-----Ccc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCC
Confidence 4999999975444 334666655432 111 12566778888887 4456788899999999999999999999
Q ss_pred cEEEEcCcccCCChhhHHHHHHhh----cCceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~----~~~i~vtHd~~~~~~ 240 (287)
.+||+|+|+-=||-+..+.|.+.+ ..+|+||||..++..
T Consensus 459 NvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 459 NLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 999999999999986555555544 346799999999876
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-25 Score=208.26 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=146.1
Q ss_pred ccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+.+++++...- .+..+ .++ |++.+|+.+|||||||||||||.|+|.|..+ |.+|.|+++|.+.
T Consensus 334 ~L~Ve~l~~~PPg~~~pil-----~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~ 405 (580)
T COG4618 334 ALSVERLTAAPPGQKKPIL-----KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDR 405 (580)
T ss_pred eeeEeeeeecCCCCCCcce-----ecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCH
Confidence 445555554332 24556 788 9999999999999999999999999999999 9999999998653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHH---------HHHHHHhccCCCCCCC----CCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQGSVYAP----SFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~---------~~~l~~l~~~~~~~~~----~lSgG 186 (287)
.+.|||+|||-..+. =|+.|||..... ..+.+++ .+++-.+-++.+..+. .||||
T Consensus 406 e~lG~hiGYLPQdVeLF~---GTIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 406 EQLGRHIGYLPQDVELFD---GTIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred HHhccccCcCcccceecC---CcHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 356999999965444 499999975321 1222222 3334444455555544 89999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
||||+++|+|+-.+|+++++|||-.-||+ .+.+.+..... ..|+|+|-+..... +++ |++...|+.+
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~ 556 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPRE 556 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHH
Confidence 99999999999999999999999999998 33344444433 34699999998877 554 8889999999
Q ss_pred HHHHHHHH
Q 023126 254 DVAKWRIE 261 (287)
Q Consensus 254 ev~~~~~~ 261 (287)
|+..+-..
T Consensus 557 eVLa~~~~ 564 (580)
T COG4618 557 EVLAKVLR 564 (580)
T ss_pred HHHHHhcC
Confidence 99877554
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-25 Score=218.86 Aligned_cols=170 Identities=14% Similarity=0.003 Sum_probs=129.6
Q ss_pred ccccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-
Q 023126 51 VFGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~- 123 (287)
.+++++++++|++. .++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l-----~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFAL-----GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSA 408 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCcee-----ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCC
Confidence 57889999999753 355 888 9999999999999999999999999999999 99999999986543
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCC--------CCCCCCCcccC
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--------VYAPSFDHGVG 188 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~lSgG~~ 188 (287)
..+++++|+++.+. -|+.+|. .+ ....+++.+.++.++.... .....||||||
T Consensus 409 ~~~~~~~~~i~~v~q~~~lf~---~ti~~n~--------~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~ 476 (555)
T TIGR01194 409 DSRDDYRDLFSAIFADFHLFD---DLIGPDE--------GE-HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQ 476 (555)
T ss_pred CCHHHHHhhCcEEccChhhhh---hhhhccc--------cc-chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHH
Confidence 34899999976443 3666663 11 1234456666666652211 12357999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChhhHHHH----H-Hhh---cCceEEEeCHHHHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV----S-SMF---DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l----~-~~~---~~~i~vtHd~~~~~~ 240 (287)
||+++|++++.+|+++++||++..+|++..+.+ . .+. ...|++||+++....
T Consensus 477 qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~ 536 (555)
T TIGR01194 477 KRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL 536 (555)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh
Confidence 999999999999999999999999999444333 2 221 234799999987644
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-25 Score=217.37 Aligned_cols=168 Identities=14% Similarity=0.045 Sum_probs=126.1
Q ss_pred ccccccccc-chhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc-----------cCCCCC-
Q 023126 56 RSLVQNKTS-LKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKP- 122 (287)
Q Consensus 56 ~~~~~~~~~-~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~-----------~~~~~~- 122 (287)
.++++||.. +++ .++..+++|+++||+||||||||||+|+|+|+++ |++|+|. ++|.+.
T Consensus 78 ~~~~~yg~~~~~L-----~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 78 EPVHRYGVNGFKL-----YGLPIPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred CceEEecCCceeE-----ecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHH
Confidence 488999863 566 7776799999999999999999999999999999 9999986 666432
Q ss_pred ---------CceeEEEeCCCCCCCc-ccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCc
Q 023126 123 ---------PDVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~-~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qr 190 (287)
...+++.+|.....+. ...|+.+++... ...+++.++++.++. ..++++.+|||||+||
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQR 220 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 1224555554222111 012666665421 134567778887774 4578899999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
++||++++.+|+++++|||+..||. .+++.++++.+ ..|++|||++++..
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDY 276 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999 34455555432 34799999999875
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-25 Score=234.98 Aligned_cols=189 Identities=14% Similarity=0.118 Sum_probs=150.8
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++|.. ..++ +++ +.|++||.+||+|+||||||||+++|.|++ +++|+|.++|.+.
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL-----~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVL-----QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CeEEEEEEEEEeCCCCccee-----eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCC
Confidence 45889999999964 4566 888 999999999999999999999999999998 4689999999764
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCCC----CCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~lSg 185 (287)
++.++|+|||++.+. -|+++|+... .....+.+.++++.++ .+.+..+. .|||
T Consensus 1287 ~~~lR~~is~IpQdp~LF~---GTIR~NLdp~-------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSg 1356 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFS---GTFRKNLDPY-------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN 1356 (1490)
T ss_pred HHHHHhceEEEeCCCccCc---cCHHHHhCcc-------cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCH
Confidence 345999999987664 4999998531 1223455666666554 22333332 7999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.++++|++||++.-+|. .+.+.|++.+. ++|+|+|.++.+.. |++ |++++.|++.
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~ 1436 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQ 1436 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999998 45555666544 34699999999888 665 8999999999
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++.+
T Consensus 1437 ~Ll~ 1440 (1490)
T TIGR01271 1437 KLLN 1440 (1490)
T ss_pred HHHc
Confidence 9874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-25 Score=206.84 Aligned_cols=195 Identities=16% Similarity=0.147 Sum_probs=148.3
Q ss_pred CCCccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 48 AQPVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
.+--++++++++.|..+ .++ .++ |++.+|+.++|+||||+||||++++|..++. -++|.|.++|.+.+
T Consensus 534 ~~G~i~fsnvtF~Y~p~k~vl-----~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDPGKPVL-----SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNV 605 (790)
T ss_pred cCCeEEEEEeEEecCCCCcee-----ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHH
Confidence 33467888999999864 555 777 9999999999999999999999999999999 99999999998753
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHH-----HHHHHHHHhc---cCCCCCC----CCCCc
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLR---NQGSVYA----PSFDH 185 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~l~---~~~~~~~----~~lSg 185 (287)
..||++|||...+. -|+..|+.++ .+.+.+.+ ++..+-+++- ++-+.++ -.|||
T Consensus 606 t~~SLRs~IGVVPQDtvLFN---dTI~yNIrya-----k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSG 677 (790)
T KOG0056|consen 606 TQSSLRSSIGVVPQDTVLFN---DTILYNIRYA-----KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSG 677 (790)
T ss_pred HHHHHHHhcCcccCcceeec---ceeeeheeec-----CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCC
Confidence 34999999976444 3888888764 33322221 2222222222 2222233 38999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH-HHh-----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ-RVL-----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~-rv~-----gr~v~~G~~~ 253 (287)
||||||++|+++...|.++++||.+..||. .++..+.++.. ..|+|.|.+..+.. ..+ |+++++|.-+
T Consensus 678 GEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~He 757 (790)
T KOG0056|consen 678 GEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHE 757 (790)
T ss_pred cchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHH
Confidence 999999999999999999999999999998 34455555543 46899999998877 322 9999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
|++..
T Consensus 758 eLl~r 762 (790)
T KOG0056|consen 758 ELLKR 762 (790)
T ss_pred HHHhc
Confidence 98764
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-24 Score=231.06 Aligned_cols=185 Identities=16% Similarity=0.200 Sum_probs=142.7
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-cccccCCCCCCc
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPD 124 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~-G~i~~~~~~~~~ 124 (287)
+.++++++++.|+. +..+ +++ +.+++|+.++|+||+|||||||+++|.|+++ |++ |+|.+. .
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL-----~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~-----~ 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTL-----SNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIR-----G 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCcee-----eceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEc-----C
Confidence 35888999999974 3455 888 9999999999999999999999999999999 999 898754 3
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------HhccCCCCC----CCCCCcccCCch
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGVGDPV 191 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~~----~~~lSgG~~qrv 191 (287)
.++|++|++..+. -|++||+.++.. .+.++..++++ .+..+.+.. -..||||||||+
T Consensus 680 ~Iayv~Q~p~Lfn---gTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRI 749 (1622)
T PLN03130 680 TVAYVPQVSWIFN---ATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRV 749 (1622)
T ss_pred eEEEEcCccccCC---CCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHH
Confidence 5999999987554 599999987532 22333333333 222233333 337999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChhhHHHH-----HHhh--cCceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDV-----SSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~~~~~l-----~~~~--~~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
++|+|+..+++++++|+++..+|.+.-+.+ .... ...|++||+++.+.. +++ |++++.|+.+++..
T Consensus 750 aLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 750 SMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999998543332 2222 235799999988776 555 89999999888754
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-24 Score=180.75 Aligned_cols=199 Identities=19% Similarity=0.097 Sum_probs=143.4
Q ss_pred CccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~G~i~~~~~~~~-- 123 (287)
.+++++++.+.-+++ .++ +++ ++|++||+.+|+||||||||||+++|+|.- + +++|+|.++|.+..
T Consensus 2 ~~L~I~dLhv~v~~~keIL-----kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~---Vt~G~I~~~GedI~~l 73 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEIL-----KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE---VTEGEILFDGEDILEL 73 (251)
T ss_pred ceeEEeeeEEEecCchhhh-----cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce---EecceEEECCcccccC
Confidence 367888999988885 777 999 999999999999999999999999999974 5 79999999997642
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHh-cCCC--CCchHHHHHHHHHHhc---cCCCCCCC-CCCcccCC
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP--WTFNPLLLLNCLKNLR---NQGSVYAP-SFDHGVGD 189 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~~--~~~~~~~~~~~l~~l~---~~~~~~~~-~lSgG~~q 189 (287)
.-+.+.+|.|.-.+- .++.+.+...... ++.. -....+++.+.++.++ ...++++. .||||||+
T Consensus 74 ~~~ERAr~GifLafQ~P~ei~G--V~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkK 151 (251)
T COG0396 74 SPDERARAGIFLAFQYPVEIPG--VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKK 151 (251)
T ss_pred CHhHHHhcCCEEeecCCccCCC--eeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHH
Confidence 226677888764432 5555554443322 1111 1123455667777776 35577777 89999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChhhHHH----HHHhhcC---ceEEEeCHHHHHH------HHh--hccccCCChHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKD----VSSMFDE---KWFIEVDLDTAMQ------RVL--KRHISTGKPPD 254 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~~~~~----l~~~~~~---~i~vtHd~~~~~~------rv~--gr~v~~G~~~e 254 (287)
|..|...++..|++.|+|++=..+|-..++. +..+.+. .++|||....+.. .++ ||++..|.+ +
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999777777777777777777777633333 3333333 4799999988876 222 999999998 7
Q ss_pred HHHHH
Q 023126 255 VAKWR 259 (287)
Q Consensus 255 v~~~~ 259 (287)
++...
T Consensus 231 l~~~l 235 (251)
T COG0396 231 LAEEL 235 (251)
T ss_pred HHHHH
Confidence 66543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=227.09 Aligned_cols=184 Identities=12% Similarity=0.059 Sum_probs=137.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCcccccCCCCC-------CceeEEEeCCCCCCCcccCCc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP-------PDVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~-~p~~G~i~~~~~~~-------~~~i~~v~qd~~~~~~~~ltv 143 (287)
+++ +.+++||+++|+||||||||||+|+|+|.+... .|++|+|.++|.+. +..++|++|++.+++. +||
T Consensus 78 ~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~--lTV 155 (1394)
T TIGR00956 78 KPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH--LTV 155 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC--CCH
Confidence 888 999999999999999999999999999986210 17899999988542 2348999999765543 899
Q ss_pred cccHHHHHHhcCC-------CCCchHHH-HHHHHHHhccC--CC-----CCCCCCCcccCCchhhhhhhccCccEEEEcC
Q 023126 144 MEDPKEAHARRGA-------PWTFNPLL-LLNCLKNLRNQ--GS-----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (287)
Q Consensus 144 ~e~i~~~~~~~~~-------~~~~~~~~-~~~~l~~l~~~--~~-----~~~~~lSgG~~qrv~ia~al~~~a~~li~d~ 208 (287)
+|++.+....... ...+..++ ..++++.++.. .+ ..+..||||||||++||++++.+|+++++||
T Consensus 156 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDE 235 (1394)
T TIGR00956 156 GETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDN 235 (1394)
T ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeC
Confidence 9999987654311 11111122 24567777632 22 3456899999999999999999999999999
Q ss_pred cccCCCh----hhHHHHHHhhc----CceEEEeCH-HHHHH---HHh----hccccCCChHHHHHH
Q 023126 209 NYLFLDG----GVWKDVSSMFD----EKWFIEVDL-DTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 209 ~~lllDe----~~~~~l~~~~~----~~i~vtHd~-~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
++..||. .+.+.|+++.+ ..|+++|++ +.+.. +++ |+++..|+++++...
T Consensus 236 PTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~y 301 (1394)
T TIGR00956 236 ATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY 301 (1394)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHH
Confidence 9999999 55666666653 236888996 45544 554 889999988876543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-24 Score=225.23 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=138.4
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CcccccCCCCC-----CceeEEEeCCCCCCCcccCCc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~---~G~i~~~~~~~-----~~~i~~v~qd~~~~~~~~ltv 143 (287)
+++ +.+++|++++|+||||||||||+|+|+|.++ |+ +|+|.++|... ++.++|++|++.+++ .+||
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~--~lTV 256 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG--VMTV 256 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCC--cCcH
Confidence 777 8999999999999999999999999999998 88 99999988542 356899999976554 4999
Q ss_pred cccHHHHHHhcCCCC----------Cc---------hH---------------HHHHHHHHHhccC-------CCCCCCC
Q 023126 144 MEDPKEAHARRGAPW----------TF---------NP---------------LLLLNCLKNLRNQ-------GSVYAPS 182 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~----------~~---------~~---------------~~~~~~l~~l~~~-------~~~~~~~ 182 (287)
+|++.+.....+... .+ +. ..+..+++.++.. .+..+..
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999998765432110 00 00 1134567777732 2456789
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCH-HHHHH---HHh----hcc
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDL-DTAMQ---RVL----KRH 246 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~-~~~~~---rv~----gr~ 246 (287)
||||||||+.+|.+++.+|+++++||++..||. .+.+.++++.+ ..|+++|++ +++.. +++ |++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 999999999999999999999999999999998 55566666543 235778886 45544 554 899
Q ss_pred ccCCChHHHHH
Q 023126 247 ISTGKPPDVAK 257 (287)
Q Consensus 247 v~~G~~~ev~~ 257 (287)
+..|+++++..
T Consensus 417 vy~G~~~~~~~ 427 (1470)
T PLN03140 417 VYQGPRDHILE 427 (1470)
T ss_pred EEeCCHHHHHH
Confidence 99998887764
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-24 Score=230.95 Aligned_cols=186 Identities=15% Similarity=0.073 Sum_probs=138.1
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----CceeEEEeCCCCCCCcccCCcccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
+++ +.+++|++++|+||||||||||+++|+|..... +.+|+|.++|.+. ++.++|++|++.+.+ .+|++|+
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~--~lTV~E~ 973 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSP--QVTVRES 973 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCC--CCcHHHH
Confidence 888 999999999999999999999999999986510 2689999988543 245899999976544 4899999
Q ss_pred HHHHHHhcCCCC----CchHHHHHHHHHHhcc--CCCCCC-----CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh
Q 023126 147 PKEAHARRGAPW----TFNPLLLLNCLKNLRN--QGSVYA-----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 147 i~~~~~~~~~~~----~~~~~~~~~~l~~l~~--~~~~~~-----~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe 215 (287)
+.+..... .+. .+..+.+.++++.++. ..+..+ ..||||||||++||++++.+|++|++|||+..||.
T Consensus 974 L~~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~ 1052 (1470)
T PLN03140 974 LIYSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052 (1470)
T ss_pred HHHHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 99865432 221 1223456788887773 234443 58999999999999999999999999999999998
Q ss_pred ----hhHHHHHHhhcC---ceEEEeCHHH-HHH---HHh-----hccccCCChH---HHHHHHHHh
Q 023126 216 ----GVWKDVSSMFDE---KWFIEVDLDT-AMQ---RVL-----KRHISTGKPP---DVAKWRIEY 262 (287)
Q Consensus 216 ----~~~~~l~~~~~~---~i~vtHd~~~-~~~---rv~-----gr~v~~G~~~---ev~~~~~~~ 262 (287)
.+++.++++.+. +|+++|+++. +.. +++ |+++..|++. .-+..|+..
T Consensus 1053 ~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~ 1118 (1470)
T PLN03140 1053 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEA 1118 (1470)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHh
Confidence 455555555432 4689999984 333 443 5778888764 234445543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-25 Score=233.56 Aligned_cols=187 Identities=12% Similarity=0.089 Sum_probs=142.4
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
.++++++++.|+. ..++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++| .++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l-----~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~ 702 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTL-----NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVA 702 (1522)
T ss_pred cEEEEEeEEEcCCCCCcee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEE
Confidence 6888999999974 3456 888 9999999999999999999999999999999 9999999876 499
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHH---HHHhc---cC----CCCCCCCCCcccCCchhhhhhh
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLR---NQ----GSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~---l~~l~---~~----~~~~~~~lSgG~~qrv~ia~al 197 (287)
|++|++.. ++ .|+++|+.++.. + .....+++.+. .+.++ .+ .......||||||||+++|+|+
T Consensus 703 yv~Q~~~l-~~--~Ti~eNI~~g~~-~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 703 YVPQQAWI-QN--DSLRENILFGKA-L---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EEcCCccc-cC--CcHHHHhhcCCc-c---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 99999764 33 699999986421 1 11112222221 22222 12 2345669999999999999999
Q ss_pred ccCccEEEEcCcccCCChhhHHHHHHhh---------cCceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMF---------DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe~~~~~l~~~~---------~~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
..+++++++|+++..+|.+..+.+.+.. ...|++||+++.+.. +++ |++++.|+.+++..
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999999999994444433221 134799999998876 444 88889999888754
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-24 Score=230.58 Aligned_cols=186 Identities=15% Similarity=0.170 Sum_probs=140.9
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
..++++++++.|.. ..++ +++ +.+++|+.++|+||+|||||||+++|+|+++ |++|.+.. .+..
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL-----~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~----~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTL-----SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV----IRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCcee-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE----ecCc
Confidence 35888999999974 3455 888 9999999999999999999999999999999 99987532 2345
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHH---------hccCCCCC----CCCCCcccCCchh
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVY----APSFDHGVGDPVE 192 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~~~~----~~~lSgG~~qrv~ 192 (287)
++|++|++..+. -|++||+.++.. .+.++..++++. +..+.+.. -..||||||||++
T Consensus 681 Iayv~Q~p~Lf~---gTIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 750 (1495)
T PLN03232 681 VAYVPQVSWIFN---ATVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVS 750 (1495)
T ss_pred EEEEcCcccccc---ccHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHH
Confidence 999999987554 599999987531 233333333332 22222332 3379999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChhhHHHH-----HHhh--cCceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDV-----SSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~~~~~l-----~~~~--~~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|+|+..+++++++|+++..+|.+.-+.+ .... .+.|++||+++.+.. +++ |++++.|+.+++..
T Consensus 751 LARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 751 MARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999999997443322 2222 235799999998766 554 89999999888764
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=175.76 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=94.3
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---ceeEEEeCCCCCCCcccCCccccHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPMDGFHLYLSQLDAMEDPK 148 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---~~i~~v~qd~~~~~~~~ltv~e~i~ 148 (287)
+++ +++++|++++|+||||||||||+++|. +++|++.+++.... ..++|++|
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~~~~~~~~~~~~q----------------- 67 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLPKFSRNKLIFIDQ----------------- 67 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCcccccccccEEEEhH-----------------
Confidence 788 999999999999999999999999884 46787766543110 01222211
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccC--ccEEEEcCcccCCChh----hHH
Q 023126 149 EAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGG----VWK 219 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~--a~~li~d~~~lllDe~----~~~ 219 (287)
.+.++.++. ..+.++.+||+||+||+++|++++.+ |+++++||++..+|.. +.+
T Consensus 68 -----------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~ 130 (176)
T cd03238 68 -----------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE 130 (176)
T ss_pred -----------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 345556663 25678889999999999999999999 9999999999999983 344
Q ss_pred HHHHhhc---CceEEEeCHHHHH
Q 023126 220 DVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 220 ~l~~~~~---~~i~vtHd~~~~~ 239 (287)
.++++.+ .+|++||+++++.
T Consensus 131 ~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 131 VIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHH
Confidence 4444432 2469999999863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=173.26 Aligned_cols=128 Identities=17% Similarity=0.184 Sum_probs=102.3
Q ss_pred cCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------c
Q 023126 54 KTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------D 124 (287)
Q Consensus 54 ~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------~ 124 (287)
++++.+.|.+..++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|++.+++.... .
T Consensus 2 ~~~~~~~~~~~~~l-----~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYGGRTAL-----DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeCCeeeE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHh
Confidence 45667777665555 777 9999999999999999999999999999999 99999888764221 1
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
.++|++| ||+||+||++++++++.+++++
T Consensus 74 ~i~~~~q---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 74 RIGYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred ceEEEee---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 1233322 9999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++|+++..+|. .+++.+.+... ..+++||+++++..
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999998 34444544433 34689999998765
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=208.46 Aligned_cols=188 Identities=11% Similarity=0.028 Sum_probs=126.5
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
...++.++++++.|+++.++ +++ ++|.+|+++||+|+||||||||+++|+|......|++|+|
T Consensus 174 ~~~~I~i~nls~~y~~~~ll-----~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I----------- 237 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLI-----VDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI----------- 237 (718)
T ss_pred CceeEEEceEEEEeCCCEEE-----ECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE-----------
Confidence 34578999999999988777 999 9999999999999999999999999999641001666654
Q ss_pred EEEeCCCCCCCcccCCcccc---------------HHHHHH-----------------hcCCCCC---------------
Q 023126 127 TVLPMDGFHLYLSQLDAMED---------------PKEAHA-----------------RRGAPWT--------------- 159 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~---------------i~~~~~-----------------~~~~~~~--------------- 159 (287)
.|++|+... . ..++.+. +.+... ..+.+..
T Consensus 238 ~~~~Q~~~g-~--~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 314 (718)
T PLN03073 238 LHVEQEVVG-D--DTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLEL 314 (718)
T ss_pred EEEeccCCC-C--CCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHh
Confidence 444444211 0 1222111 000000 0000111
Q ss_pred ----chHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh----cCc
Q 023126 160 ----FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DEK 228 (287)
Q Consensus 160 ----~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~----~~~ 228 (287)
....++.++|..++.. .++++.+|||||+||++||++++.+|++|++|||+..||......+.+++ ...
T Consensus 315 ~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tv 394 (718)
T PLN03073 315 IDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTF 394 (718)
T ss_pred cCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 1123444555555532 45678899999999999999999999999999999999994444443333 345
Q ss_pred eEEEeCHHHHHH---HHh----hccc-cCCChHH
Q 023126 229 WFIEVDLDTAMQ---RVL----KRHI-STGKPPD 254 (287)
Q Consensus 229 i~vtHd~~~~~~---rv~----gr~v-~~G~~~e 254 (287)
|++|||++.+.. +++ |++. ..|...+
T Consensus 395 iivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 395 IVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 799999999876 444 6665 4566544
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-24 Score=226.05 Aligned_cols=170 Identities=12% Similarity=0.154 Sum_probs=130.0
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++..+ + .|+++|+.++.
T Consensus 443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iayv~Q~~~l~-~--~Ti~eNI~~g~ 511 (1490)
T TIGR01271 443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISFSPQTSWIM-P--GTIKDNIIFGL 511 (1490)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEEEeCCCccC-C--ccHHHHHHhcc
Confidence 788 9999999999999999999999999999999 9999999876 399999997643 3 49999998753
Q ss_pred HhcCCCCCchHHHH------HHHHHHhccC----CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHH
Q 023126 152 ARRGAPWTFNPLLL------LNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (287)
Q Consensus 152 ~~~~~~~~~~~~~~------~~~l~~l~~~----~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l 221 (287)
. +. ......+ .+.++.+..+ .......||||||||+++|+|+..+|+++++|+++..+|.+..+.+
T Consensus 512 ~-~~---~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i 587 (1490)
T TIGR01271 512 S-YD---EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587 (1490)
T ss_pred c-cc---hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2 11 1111111 2233333222 2335669999999999999999999999999999999999544444
Q ss_pred HH-----hhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 222 SS-----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 222 ~~-----~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
.+ +.. ..|++||+++.+.. +++ |++++.|+.+++..
T Consensus 588 ~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 588 FESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 33 222 34799999998766 444 78888899888754
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=169.09 Aligned_cols=184 Identities=18% Similarity=0.089 Sum_probs=134.9
Q ss_pred ccccCccccccccc--chh-hhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC-----
Q 023126 51 VFGKTRSLVQNKTS--LKV-LCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----- 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~--~~~-v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~----- 121 (287)
.+.+++++|.|--. ..+ +... +++ ++++.||++++-||||||||||+|+|.|.|. ||+|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~-~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVL-RNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDL 79 (235)
T ss_pred eeeeecchhheEeeecCCEEeeee-eceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhh
Confidence 45667777777422 111 2223 555 9999999999999999999999999999999 999998764321
Q ss_pred -----------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCccc
Q 023126 122 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 187 (287)
Q Consensus 122 -----------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~ 187 (287)
.+..+||++|---..+ ..+..+.++......|.+......++..+|.++... ....+.++||||
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviP--RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE 157 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIP--RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE 157 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhcc--CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence 1234899988643333 356677777777777877666677888899888732 345677999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcCc---eEEEeCHHHHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ 240 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~---i~vtHd~~~~~~ 240 (287)
||||.||+.++.+-.+|++|+++.-||. .+.+.+.+....+ +=|=||.+....
T Consensus 158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~ 217 (235)
T COG4778 158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREA 217 (235)
T ss_pred heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHH
Confidence 9999999999999999999999999998 3444444443332 346688776544
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-23 Score=220.29 Aligned_cols=170 Identities=15% Similarity=0.130 Sum_probs=128.4
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.+. ..++|++|++.. ++ .|+++|+.++.
T Consensus 677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~-----~~i~yv~Q~~~l-~~--~Tv~enI~~~~ 745 (1560)
T PTZ00243 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAE-----RSIAYVPQQAWI-MN--ATVRGNILFFD 745 (1560)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEEC-----CeEEEEeCCCcc-CC--CcHHHHHHcCC
Confidence 788 9999999999999999999999999999999 999998764 359999999764 33 69999998642
Q ss_pred HhcCCCCCchHH------HHHHHHHHhc----cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHH
Q 023126 152 ARRGAPWTFNPL------LLLNCLKNLR----NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (287)
Q Consensus 152 ~~~~~~~~~~~~------~~~~~l~~l~----~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l 221 (287)
.. .....+ .+.+.++.+. ...+.+..+||||||||+++|+|+..+++++++|+++..||....+.+
T Consensus 746 ~~----~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i 821 (1560)
T PTZ00243 746 EE----DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV 821 (1560)
T ss_pred hh----hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 10 000111 1233344442 123456779999999999999999999999999999999997433322
Q ss_pred HH-----hhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 222 SS-----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 222 ~~-----~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
.+ ... ..|++||+++.+.. +++ |++++.|+.+++..
T Consensus 822 ~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 822 VEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 21 222 34799999999866 554 78888999888754
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-24 Score=170.85 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=96.0
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------ceeEEEeCCCCCCCcccCCc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------~~i~~v~qd~~~~~~~~ltv 143 (287)
+++ +.+.+|++++|+|+||||||||+++|+|.++ |++|.|.+++.+.. ..++|++|+..... .+|+
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~tv 76 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP--GLTV 76 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT--TSBH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeeccccc---cccccccccccccccccccccccccccccccccccc--cccc
Confidence 456 8999999999999999999999999999999 99999988875432 34899999954333 3677
Q ss_pred cccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCC----CCCCCCcccCCchhhhhhhccCccEEEEcCcc
Q 023126 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~----~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~ 210 (287)
.+| ...+++.++++.++. ..+. +...||+||+||+++|++++.+++++++|+|+
T Consensus 77 ~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 77 REN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred ccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 776 233456666666662 2233 44899999999999999999999999999986
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-22 Score=196.77 Aligned_cols=186 Identities=13% Similarity=0.132 Sum_probs=144.3
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC-----CCceeEEEeCCCCCCCcccCCcccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~-----~~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
+++ ..+++||+.||+||+|||||||+++|+|........+|+|.+||.. .+...+|+.||+...+. +||+|+
T Consensus 47 ~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~--LTV~Et 124 (613)
T KOG0061|consen 47 KGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT--LTVRET 124 (613)
T ss_pred eCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccc--ccHHHH
Confidence 888 8999999999999999999999999999987322468999999943 24568999999876654 999999
Q ss_pred HHHHHHhcCC---CCCchHHHHHHHHHHhccC--CCCCC-----CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh-
Q 023126 147 PKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG- 215 (287)
Q Consensus 147 i~~~~~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~-----~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe- 215 (287)
+.+....+-. ...+..+++++++++++.. .+..+ +.+|||||+||++|.-++.+|.+|++|||+..||-
T Consensus 125 L~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~ 204 (613)
T KOG0061|consen 125 LRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSF 204 (613)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchh
Confidence 9997665421 2245567889999999843 34444 46999999999999999999999999999999998
Q ss_pred ---hhHHHHHHhhcC--c-eEEEeCHHHH-HH---HHh----hccccCCChHHHHHHHHH
Q 023126 216 ---GVWKDVSSMFDE--K-WFIEVDLDTA-MQ---RVL----KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 216 ---~~~~~l~~~~~~--~-i~vtHd~~~~-~~---rv~----gr~v~~G~~~ev~~~~~~ 261 (287)
.+.+.|+++... + |+.-|.+.-- .+ +++ |+.+..|++++... ++.
T Consensus 205 sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~-ff~ 263 (613)
T KOG0061|consen 205 SALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE-FFS 263 (613)
T ss_pred hHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH-HHH
Confidence 455556665543 3 3555777643 33 555 89999999877554 444
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-22 Score=173.95 Aligned_cols=164 Identities=13% Similarity=0.041 Sum_probs=96.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHH-HHHHHHhccc-----CCCCc----ccccCC--CCCCceeEEEeCCCCCCCcc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLA-AEVVRRINKI-----WPQKA----SSFDSQ--VKPPDVATVLPMDGFHLYLS 139 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLl-k~L~G~l~~~-----~p~~G----~i~~~~--~~~~~~i~~v~qd~~~~~~~ 139 (287)
+++ +++++||++||+|+||||||||+ ..|...-+.. .|..+ .+.... ........+..+++....++
T Consensus 12 ~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T cd03270 12 KNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSRNP 91 (226)
T ss_pred ccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCCCC
Confidence 777 99999999999999999999996 3333110000 01101 010000 00111233444444333222
Q ss_pred cCCccc---cHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCc--cEEEEcCccc
Q 023126 140 QLDAME---DPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYL 211 (287)
Q Consensus 140 ~ltv~e---~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a--~~li~d~~~l 211 (287)
..++.. ...+....+ ... ......+.++.++. ..+.++.+|||||+||+++|++++.+| +++++|||+.
T Consensus 92 ~~~v~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~ 168 (226)
T cd03270 92 RSTVGTVTEIYDYLRLLF--ARV-GIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSI 168 (226)
T ss_pred CccHHHHHHHHHHHHHHh--hhh-hHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 233321 111111111 111 12222567777773 357788899999999999999999887 6999999999
Q ss_pred CCChh----hHHHHHHhhc---CceEEEeCHHHHH
Q 023126 212 FLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 212 llDe~----~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
.+|.. +.+.+.++.+ ..|++|||++++.
T Consensus 169 gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~ 203 (226)
T cd03270 169 GLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR 203 (226)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH
Confidence 99983 4444444432 2469999999863
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-22 Score=203.65 Aligned_cols=193 Identities=17% Similarity=0.195 Sum_probs=155.9
Q ss_pred CCCccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 48 AQPVFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
.+--++++|++++|... .++ +++ +.|++||.|||+|..|||||||+.+|-.+.+ |.+|+|.++|.+.
T Consensus 1135 ~~G~I~f~~~~~RYrp~lp~VL-----k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYRPNLPLVL-----KGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISK 1206 (1381)
T ss_pred CCCeEEEEEeEEEeCCCCcchh-----cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeeccc
Confidence 33468899999999875 566 888 9999999999999999999999999999999 9999999999765
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCCC----CC
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SF 183 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~l 183 (287)
+.+++++||||..+. =|++.|+.=. ..+..+.+-++|+... .+.+..+. ++
T Consensus 1207 igL~dLRsrlsIIPQdPvLFs---GTvR~NLDPf-------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~ 1276 (1381)
T KOG0054|consen 1207 IGLHDLRSRLSIIPQDPVLFS---GTVRFNLDPF-------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENF 1276 (1381)
T ss_pred ccHHHHHhcCeeeCCCCceec---CccccccCcc-------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccC
Confidence 345899999987655 3888887521 1223334444444332 33444443 79
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH--HHh----hccccCCC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGK 251 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~--rv~----gr~v~~G~ 251 (287)
|-||||.+++|+|+..+.++|++||.+.-.|. -+++.|++.+.. ++.|-|.++.++. |++ |+++|.|+
T Consensus 1277 SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1277 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDS 1356 (1381)
T ss_pred ChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCC
Confidence 99999999999999999999999999999998 466777777754 3578999999999 776 99999999
Q ss_pred hHHHHHH
Q 023126 252 PPDVAKW 258 (287)
Q Consensus 252 ~~ev~~~ 258 (287)
|.++..+
T Consensus 1357 P~~Ll~~ 1363 (1381)
T KOG0054|consen 1357 PAELLSD 1363 (1381)
T ss_pred hHHHHhC
Confidence 9998764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-22 Score=185.47 Aligned_cols=191 Identities=14% Similarity=0.091 Sum_probs=143.2
Q ss_pred cccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 52 FGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 52 ~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+.+.++.+.|.. +..+ .++ +.+.+|+.++++|++|+||||++++|..++. +++|.|.++|.+.+
T Consensus 263 v~F~~V~F~y~~~r~iL-----~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~s 334 (497)
T COG5265 263 VAFINVSFAYDPRRPIL-----NGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQS 334 (497)
T ss_pred EEEEEEEeeccccchhh-----cCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHH
Confidence 456677888875 4555 777 9999999999999999999999999999999 99999999997753
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHH--HH------HHHHHHhccCCCCCCC----CCCcccCC
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL--LL------LNCLKNLRNQGSVYAP----SFDHGVGD 189 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~--~~------~~~l~~l~~~~~~~~~----~lSgG~~q 189 (287)
+.||++|||...+ + -|...|+.++ .+.+-+.+ .+ ...++.+-++.+..+. .|||||||
T Consensus 335 lR~aIg~VPQDtvLF-N--Dti~yni~yg-----r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 335 LRRAIGIVPQDTVLF-N--DTIAYNIKYG-----RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHHHhCcCcccceeh-h--hhHHHHHhcc-----CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 3489999996543 3 3666666653 33222221 11 1222233344444444 79999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
||++|+++..+|+++++||-+..||.+ ++..+++... +.+++.|-+..+.. .++ |+++++|+-++++.
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 999999999999999999999999983 4444555443 35899999998877 444 99999999999876
Q ss_pred H
Q 023126 258 W 258 (287)
Q Consensus 258 ~ 258 (287)
.
T Consensus 487 ~ 487 (497)
T COG5265 487 A 487 (497)
T ss_pred c
Confidence 4
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-21 Score=165.94 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=103.6
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---------cccccCCCCC-----CceeEEEeCCCCCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---------ASSFDSQVKP-----PDVATVLPMDGFHLY 137 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~---------G~i~~~~~~~-----~~~i~~v~qd~~~~~ 137 (287)
+++ +.+.+| +++|+||||||||||+++|+|+++ |.. |++.+.+... ...+++++|++...+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 444 789999 999999999999999999999986 553 3455554432 346899999864321
Q ss_pred cccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhc----cCccEEEEcCcccCC
Q 023126 138 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFL 213 (287)
Q Consensus 138 ~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~----~~a~~li~d~~~lll 213 (287)
+.. ..+++.++++. ....+..+..||+||+||+++|++++ .+++++++||++..+
T Consensus 90 -----------------~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 90 -----------------SII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----------------eEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 110 12355566655 44556778899999999999999986 467999999999999
Q ss_pred Ch----hhHHHHHHhhc--CceEEEeCHHHHH
Q 023126 214 DG----GVWKDVSSMFD--EKWFIEVDLDTAM 239 (287)
Q Consensus 214 De----~~~~~l~~~~~--~~i~vtHd~~~~~ 239 (287)
|+ .+++.++++.+ ..|++||+++.+.
T Consensus 149 D~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 149 DDANVERFARLLKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEEECCHHHHh
Confidence 98 34444444432 2469999998763
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-21 Score=164.99 Aligned_cols=187 Identities=23% Similarity=0.313 Sum_probs=138.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
++||.|+||||||||++.|++.+. +..+ ...+.++++|+++.....+ .+. . .....+.+.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~---------~~~v~vi~~D~f~~~~~~~--~~~-~-~~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPD---------HPNVELITTDGFLYPNKEL--IER-G-LMDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCC---------CCcEEEEecCcccCcHHHH--HHh-h-hhhcCCCcccCCH
Confidence 589999999999999999999997 4211 1126789999886553211 111 1 1123566778888
Q ss_pred HHHHHHHHHhcc-CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh-hhHHHHHHhhcCceEEEeCHHHHHH
Q 023126 163 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 163 ~~~~~~l~~l~~-~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe-~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
+.+.+.|..+.. .....+|.||.....+..-......+++++|+|+.+++.++ .-|..+.++++..||++-+.+++..
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~ 144 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEK 144 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHH
Confidence 888899998887 45778899999998887765444667899999999999985 5678899999999999999998766
Q ss_pred HHhhc----------ccc------CCChHHHH----HHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 241 RVLKR----------HIS------TGKPPDVA----KWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 241 rv~gr----------~v~------~G~~~ev~----~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
|++.| ... .|-+.+.. ...|....+|+++ ||.|++++||+|++..
T Consensus 145 rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 145 WYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred HHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 44422 221 34433332 3346668999994 9999999999999754
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-22 Score=203.32 Aligned_cols=188 Identities=12% Similarity=0.147 Sum_probs=144.8
Q ss_pred CCCCccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC
Q 023126 47 NAQPVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~ 122 (287)
..++.+++++.++..+. ...+ +++ +.+++|+.+||+|+-|||||+|+.+|.|.++ ..+|++.++|.
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL-----~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-- 583 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTL-----KDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-- 583 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccc-----cceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe--
Confidence 44556777777777654 2245 788 9999999999999999999999999999999 99999998875
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------HhccCCC----CCCCCCCcccCC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGS----VYAPSFDHGVGD 189 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~----~~~~~lSgG~~q 189 (287)
++|++|.+-.+. -|++|||.|+.. ++.++..+.++ .+..+.. .+--+|||||||
T Consensus 584 ---iaYv~Q~pWI~n---gTvreNILFG~~-------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKq 650 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQN---GTVRENILFGSP-------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQ 650 (1381)
T ss_pred ---EEEeccccHhhC---CcHHHhhhcCcc-------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHH
Confidence 899999975444 599999987532 23344333333 2222222 234489999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChhhHHHHH-----Hhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~~~~~l~-----~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
|+++|+|+-.++++.++|.++..+|.++-+.+- .+.+ ..|++||.++...+ +++ |++.+.|+.+|+.
T Consensus 651 RIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 651 RISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHH
Confidence 999999999999999999999999995443333 3333 35799999988877 554 8999999999987
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
+
T Consensus 731 ~ 731 (1381)
T KOG0054|consen 731 K 731 (1381)
T ss_pred h
Confidence 4
|
|
| >COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=159.03 Aligned_cols=182 Identities=28% Similarity=0.400 Sum_probs=144.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 159 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~ 159 (287)
+.-++||.|+|||||||+++.|.-.++ . ..+++++||+|+......+..++ ...++.+|.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~---~-------------~~~~~I~~D~YYk~~~~~~~~~~---~~~n~d~p~A 67 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG---V-------------EKVVVISLDDYYKDQSHLPFEER---NKINYDHPEA 67 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC---c-------------CcceEeeccccccchhhcCHhhc---CCcCccChhh
Confidence 456899999999999999999999986 2 13788999998776544333222 2245677889
Q ss_pred chHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHH
Q 023126 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 239 (287)
Q Consensus 160 ~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~ 239 (287)
.+.+.+.+.|..+..+.....|.||.-+.-|.. -.....+.+++|+||-+++.| +.++++++..||++.|.+...
T Consensus 68 ~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d----~~lr~~~d~kIfvdtd~D~Rl 142 (218)
T COG0572 68 FDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYD----ERLRDLMDLKIFVDTDADVRL 142 (218)
T ss_pred hcHHHHHHHHHHHHcCCcccccccchhcccccC-CccccCCCcEEEEeccccccc----HHHHhhcCEEEEEeCCccHHH
Confidence 999999999999988888888888887777764 222456689999999999999 688999999999999999988
Q ss_pred HHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 240 QRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 240 ~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
.|.+.|.+ ++|...+-+-..|....+|+++ ||+|++++||+|+|..
T Consensus 143 iRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~ 190 (218)
T COG0572 143 IRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSG 190 (218)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEEeecC
Confidence 87776655 5776666544455567889988 9999999999999864
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=174.94 Aligned_cols=179 Identities=15% Similarity=0.047 Sum_probs=134.8
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
.+.|++-++++.++|.+.. -+|.++ |.++.++.++++||||+|||||+|++.|.+. |+.|.+.......
T Consensus 385 ~p~pvi~~~nv~F~y~~~~----~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~--- 454 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSDNP----MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNK--- 454 (614)
T ss_pred CCCCeEEEeccccCCCCcc----hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---ccccccccccccc---
Confidence 5678999999999998775 235777 9999999999999999999999999999999 9999986543322
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++++.|......+=+.++.++ ....+. .....+.+..+|.+++. ....+..+||.|||.||.+|.....+|.
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~---~~~~~~--~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEF---MMPKFP--DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred chhhhhhhHhhcCcchhHHHH---HHHhcc--ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc
Confidence 455555532211111233332 222222 23456677888888884 3456788999999999999999999999
Q ss_pred EEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+|++|+++-.||-+....+.+... .+|++|||.-++.+
T Consensus 530 lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred EEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHH
Confidence 999999999999865555555443 45799999988877
|
|
| >PTZ00301 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=156.37 Aligned_cols=184 Identities=23% Similarity=0.333 Sum_probs=138.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 161 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~ 161 (287)
-+|||.|++|||||||++.|...+. -..| ...+.++++|+|+.....+... ......++.|.+.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~---~~~~---------~~~~~vi~~D~yy~~~~~~~~~---~~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM---AHCG---------PVSIGVICEDFYYRDQSNIPES---ERAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH---hhcC---------CCeEEEeCCCCCccCcccCCHH---HhcCCCCCChhhhC
Confidence 4899999999999999999887653 1111 1225688999887654333221 11234667788999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHH
Q 023126 162 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 241 (287)
Q Consensus 162 ~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~r 241 (287)
.+.+.+.|..+..+.....|.|+.....|..- ...+.+.+++|+||.+++.+ ..+.++++..||++.+.++.+.|
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~-~~~i~p~~ViIvEGi~~l~~----~~l~~l~D~~ifvd~~~d~~~~R 143 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDT-AVTMTPKSVLIVEGILLFTN----AELRNEMDCLIFVDTPLDICLIR 143 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCc-eEEeCCCcEEEEechhhhCC----HHHHHhCCEEEEEeCChhHHHHH
Confidence 99999999999877777888888776666542 23345679999999999877 47788899999999999999998
Q ss_pred Hhhcccc-CCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 242 VLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 242 v~gr~v~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
.+.|.+. +|.+.+-+...|.....+++. ||.|++.+||+|++..
T Consensus 144 r~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~ 189 (210)
T PTZ00301 144 RAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSW 189 (210)
T ss_pred HHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCC
Confidence 8888774 788777666655665555555 9999999999999854
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=171.11 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=126.4
Q ss_pred CccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc---
Q 023126 50 PVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--- 124 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~--- 124 (287)
.-++++++...|.+. +.+ +.+ +++++||+|-|+|.||||||||++.|.|+++ |++|+|.++|++...
T Consensus 321 ~~lelrnvrfay~~~~Fhv-----gPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHV-----GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQL 392 (546)
T ss_pred cceeeeeeeeccCccccee-----cceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCH
Confidence 357888888888765 677 888 9999999999999999999999999999999 999999999976421
Q ss_pred -----eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------CCCCCCCCCCcccCCchh
Q 023126 125 -----VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 125 -----~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------~~~~~~~~lSgG~~qrv~ 192 (287)
.++-++-| +++++ ...+.......+.+..+|+++.. ......-.||.|||+|++
T Consensus 393 edYR~LfSavFsD-yhLF~-------------~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlA 458 (546)
T COG4615 393 EDYRKLFSAVFSD-YHLFD-------------QLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLA 458 (546)
T ss_pred HHHHHHHHHHhhh-HhhhH-------------hhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHH
Confidence 12223323 22222 22222222345566677776662 122234489999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChh--------hHHHHHHhhcCceEEEeCHHHHHH--HHh----hccccC
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGG--------VWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHIST 249 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~--------~~~~l~~~~~~~i~vtHd~~~~~~--rv~----gr~v~~ 249 (287)
+-.|+..+-.++++|||-.=-|+. .+..+++.-++++.||||-.--.. |++ |++++.
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999998888883 223333444445689999764333 555 777754
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-20 Score=154.57 Aligned_cols=172 Identities=19% Similarity=0.156 Sum_probs=123.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------ceeEEEeCCCCCCCcccCCccccH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQLDAMEDP 147 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------~~i~~v~qd~~~~~~~~ltv~e~i 147 (287)
..+..||++-++||||||||||+..++|++ |-+|+|.++|.+.. +.-+|+.|+....+ .|.|+..+
T Consensus 20 ~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f--~mpV~~YL 93 (248)
T COG4138 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPF--AMPVWHYL 93 (248)
T ss_pred cccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcc--hhhhhhhh
Confidence 578999999999999999999999999998 88999999987642 23578877755333 36776655
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh-------ccCccEEEEcCcccCCChh--
Q 023126 148 KEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV-------GLQHKVVIVDGNYLFLDGG-- 216 (287)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al-------~~~a~~li~d~~~lllDe~-- 216 (287)
.+. .|.......+.++...++ +...+.+.+|||||.|||-+|... -+.++.|+.|+++.-||-.
T Consensus 94 ~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~ 168 (248)
T COG4138 94 TLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ 168 (248)
T ss_pred hhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHH
Confidence 431 232222333444444444 566678889999999999997653 3356889999999999972
Q ss_pred --hHHHHHHhhcC---ceEEEeCHHHHHH-----HHh--hccccCCChHHHHHH
Q 023126 217 --VWKDVSSMFDE---KWFIEVDLDTAMQ-----RVL--KRHISTGKPPDVAKW 258 (287)
Q Consensus 217 --~~~~l~~~~~~---~i~vtHd~~~~~~-----rv~--gr~v~~G~~~ev~~~ 258 (287)
+-+.+..++.. +|+.+||++.-.+ +.+ |++...|..+|++..
T Consensus 169 ~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 169 SALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred HHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 23344445544 3688999998776 333 788899999887653
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.3e-20 Score=163.57 Aligned_cols=192 Identities=21% Similarity=0.319 Sum_probs=141.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~ 158 (287)
+.-.++||.|+||||||||+++|.+++.. +|++|. +.++++|+|+.+...+ +... ....++.|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g~-----------V~vi~~D~f~~~~~~l---~~~g-~~~~~g~P~ 123 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHRK-----------VELITTDGFLHPNQVL---KERN-LMKKKGFPE 123 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCCc-----------eEEEecccccccHHHH---HHcC-CccccCCCh
Confidence 34579999999999999999999999862 244443 5678899887653211 1111 123456788
Q ss_pred CchHHHHHHHHHHhccCCC-CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh------hhHHHHHHhhcCceEE
Q 023126 159 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKWFI 231 (287)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~-~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe------~~~~~l~~~~~~~i~v 231 (287)
+.+.+.+.+.+..+..+.. ..+|.||.-...++.-....+.+++++|+||.+++.++ ..|..+.++++..||+
T Consensus 124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~Iyv 203 (290)
T TIGR00554 124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYV 203 (290)
T ss_pred hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEE
Confidence 8898888999988887654 78889998887777654445578999999999998653 4588889999999999
Q ss_pred EeCHHHHHHHHhhccc-----c-----------CCChH-HH---HHHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 232 EVDLDTAMQRVLKRHI-----S-----------TGKPP-DV---AKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 232 tHd~~~~~~rv~gr~v-----~-----------~G~~~-ev---~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
.-|.+.+.+|.+.|.. + .|-++ +. ..+.|.....++.. ||+|++.+||+|+++-.
T Consensus 204 Da~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 204 DAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred ECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 9999998876553321 1 12222 32 23456777788885 99999999999998654
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=159.70 Aligned_cols=157 Identities=9% Similarity=0.059 Sum_probs=110.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-cccccCCC-C----------CCceeEEEeCCCCC-------CCcccC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQV-K----------PPDVATVLPMDGFH-------LYLSQL 141 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~-G~i~~~~~-~----------~~~~i~~v~qd~~~-------~~~~~l 141 (287)
..+++|+||||||||||+++|++++. ++. |+++..+. + ....+++++|++.. ...+.+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l 101 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI 101 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence 55889999999999999999999998 763 45554432 1 12358889988521 123357
Q ss_pred CccccHHHHHHhcC-C-CCCchHHHHHHHHHHhccCC----------------------CCCCCCCCcccCCchhhhhhh
Q 023126 142 DAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG----------------------SVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 142 tv~e~i~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~~----------------------~~~~~~lSgG~~qrv~ia~al 197 (287)
++.+++........ . .+....+++.+.|+.++... +.++.+||+||+||+++|+++
T Consensus 102 tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 102 TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 88888765432111 1 12234567788888887431 256779999999999999998
Q ss_pred c----cCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH
Q 023126 198 G----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 240 (287)
Q Consensus 198 ~----~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~ 240 (287)
+ .+++++++||++..+|. .+++.++++... .|++||+.+....
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~ 234 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNN 234 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 7 57899999999999998 445555555433 4799999655543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-19 Score=164.35 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=137.2
Q ss_pred cchhhhhccCCCCccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 38 SFSWIRRNANAQPVFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
.|.++..+-..-|++.+.++++.| |....+ ..+ |.|.--..+||+||||.|||||+++|.|.+. |+.|+.
T Consensus 573 kF~FPep~~L~PPvLGlH~VtFgy~gqkpLF-----kkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~ 644 (807)
T KOG0066|consen 573 KFQFPEPTKLNPPVLGLHDVTFGYPGQKPLF-----KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGEL 644 (807)
T ss_pred EEecCCCCCCCCCeeecccccccCCCCCchh-----hcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchh
Confidence 344444433566899999999999 555666 677 8888889999999999999999999999999 999997
Q ss_pred ccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH-HHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCch
Q 023126 116 FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 116 ~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~-~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv 191 (287)
+-+.. ..||++.|... ..++..+..... .+.+.+| .+.++..|..+|. .....+..|||||+.||
T Consensus 645 RKnhr---L~iG~FdQh~~----E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRV 713 (807)
T KOG0066|consen 645 RKNHR---LRIGWFDQHAN----EALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARV 713 (807)
T ss_pred hccce---eeeechhhhhH----HhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHH
Confidence 75543 34888777632 234555554433 3344443 4556677777773 33467889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChhhHH----HHHHhhcCceEEEeCHHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~~~~----~l~~~~~~~i~vtHd~~~~~~ 240 (287)
++|-.-...|++||+|+++--||-+.+. .|.+....+|+||||...+.+
T Consensus 714 alaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 714 ALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVE 766 (807)
T ss_pred HHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeee
Confidence 9988888899999999999999975444 444444557899999877655
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-19 Score=166.06 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=118.0
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
+.+++-.++.+.||+. .+ ..- =.+..||++|++||||-|||||+++|+|.++ |++|. .....++
T Consensus 340 ~~lv~y~~~~k~~g~F-~L-----~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~------~~~~~vS 404 (591)
T COG1245 340 DTLVEYPDLKKTYGDF-KL-----EVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS------EEDLKVS 404 (591)
T ss_pred ceeeecchheeecCce-EE-----EecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC------CccceEe
Confidence 4456666777777732 22 111 3577889999999999999999999999999 99997 1223477
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEE
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li 205 (287)
|=||--. +....||.+.+....... ....+ .-.+++..+. ...++++..|||||.|||+||.+|..+|++.+
T Consensus 405 yKPQyI~--~~~~gtV~~~l~~~~~~~-~~~s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYl 478 (591)
T COG1245 405 YKPQYIS--PDYDGTVEDLLRSAIRSA-FGSSY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYL 478 (591)
T ss_pred ecceeec--CCCCCcHHHHHHHhhhhh-cccch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEE
Confidence 8777533 333468877655432221 11111 1123333333 45678999999999999999999999999999
Q ss_pred EcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 206 VDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+|++-..||-+ ..+.++.... ..++|.||+-.+-.
T Consensus 479 lDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 479 LDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred ecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 99999999972 2344444433 23689999887655
|
|
| >PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-19 Score=155.04 Aligned_cols=185 Identities=31% Similarity=0.477 Sum_probs=128.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH--HHhcCCCCCc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWTF 160 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~--~~~~~~~~~~ 160 (287)
+|||.|++|||||||++.|...+. . .|. .....+.++.+|.++... ...+.-... ...++.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~---~-~~~------~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a~ 67 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN---K-RGI------PAMEMDIILSLDDFYDDY---HLRDRKGRGENRYNFDHPDAF 67 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---T-CTT------TCCCSEEEEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---c-cCc------CccceeEEEeeccccccc---chhhHhhccccccCCCCcccc
Confidence 689999999999999999999996 2 111 000125677777664321 110100000 1123456778
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHH
Q 023126 161 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 161 ~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
+.+.+.+.|..+........|.|+.....+.. ...+..+++++|+||.++++|+. ++++++..||+..+.++.+.
T Consensus 68 d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~ifld~~~~~~l~ 142 (194)
T PF00485_consen 68 DFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDLKIFLDADEDLRLE 142 (194)
T ss_dssp SHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SEEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----ecccceeEEEecccHHHHHH
Confidence 88899999999887777777888877776666 23345678999999999999954 88899999999999999999
Q ss_pred HHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 241 RVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 241 rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
|.+.|.+ ++|...+.+.++|. ...+.+. ||.|++++||+|+++..
T Consensus 143 Rri~RD~~~rG~~~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 143 RRIQRDVAERGRSPEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHHHHHS-S-HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCT
T ss_pred HHhhhhccccCCcceeEEEEee-cCChhhhhheeccccccEEEECCCC
Confidence 8887766 57876665555555 5566666 99999999999999864
|
7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=148.09 Aligned_cols=190 Identities=39% Similarity=0.658 Sum_probs=142.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEE-EeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV-LPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~-v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
.+..++||+|+||||||||++.|+++++ +++|.+. . +++|+++.+...+. .+ . .....+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~~~-----------v~i~~D~~~~~~~~~~--~~-g-~~~~~~~~ 92 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGELPA-----------IQVPMDGFHLDNAVLD--AH-G-LRPRKGAP 92 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCCce-----------EEEecccccCCHHHHH--hc-c-cccccCCC
Confidence 5568999999999999999999999998 7777532 2 66776654431110 10 0 00123345
Q ss_pred CCchHHHHHHHHHHhccCC-CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHH
Q 023126 158 WTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 236 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~ 236 (287)
...+.+.+.+.+..+.... ....+.|+....+.+.-...+....++++.|+.++++++..|..+...++..+++.-+.+
T Consensus 93 ~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~ 172 (229)
T PRK09270 93 ETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAE 172 (229)
T ss_pred CCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHH
Confidence 5667777888888887554 566777777776654432223335789999999999998888889999999999999999
Q ss_pred HHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEEeccCC
Q 023126 237 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 286 (287)
Q Consensus 237 ~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~ 286 (287)
...+|+..|..+.|...+.+.+.+.....++++|+.+.+.+||+||++..
T Consensus 173 ~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 173 VLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTA 222 (229)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecC
Confidence 99888888877788777777777776677888999999999999998753
|
|
| >KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=146.95 Aligned_cols=204 Identities=42% Similarity=0.680 Sum_probs=175.2
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
-..-+.+|+.|+.|+||||++..+.... |..-.- ++. ..-....++|+|+|++....+..+++.......+|.|
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aW----p~~~~~-f~~-e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGap 189 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAW----PVNVNK-FAQ-ESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP 189 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhc----chhhhh-hhh-hhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence 4456799999999999999999988754 432100 111 1111234589999999988889999999988899999
Q ss_pred CCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCH
Q 023126 158 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 235 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~ 235 (287)
+.++...+...+..+. ...+.++|.+..|-+..+.--..+....|++|+|+.++++|++-|+.+-+.++.+.++.-|.
T Consensus 190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~ 269 (323)
T KOG2702|consen 190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDY 269 (323)
T ss_pred cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccH
Confidence 9999999998888887 66788999999999999988888888899999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCC--ChHHHHHHHHHhcCcchHHHHhhcCCCccEEeccCCC
Q 023126 236 DTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 287 (287)
Q Consensus 236 ~~~~~rv~gr~v~~G--~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~~ 287 (287)
+.+++|+..|.+..| ++.+...|+++.+..++.++|..+.-.+|+++...++
T Consensus 270 ~~a~~RVa~RHl~sGl~~t~~ea~er~d~ND~~N~~~I~k~~i~~D~iv~~~n~ 323 (323)
T KOG2702|consen 270 EAAEERVAKRHLQSGLVTTIAEARERFDSNDLLNGRDIDKHLIKVDNIVHIRND 323 (323)
T ss_pred HHHHHHHHHHhhcccccCCHHHHHhhcccccccchHHHHhcccchHHHHHhhcC
Confidence 999999999999999 8889999999999999999999999999999876553
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.4e-18 Score=143.23 Aligned_cols=178 Identities=23% Similarity=0.350 Sum_probs=129.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
++||+|+||||||||+++|.+++. . ..+.++++|+++... +..+........++.+.+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---~-------------~~~~v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---N-------------PKVVIISQDSYYKDL---SHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---C-------------CCeEEEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence 589999999999999999999874 1 126788999775432 232322222233455666777
Q ss_pred HHHHHHHHHhccCC--CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHH
Q 023126 163 LLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 163 ~~~~~~l~~l~~~~--~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
+.+.+.|..+.... ..+...+|.|++++..+ .+.++.+++.|+++++.++ .+.+.++..||+..+.+....
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~----~~~~~~d~~i~v~~~~~~~~~ 134 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK----ELRDLMDLKIFVDTDADVRLI 134 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch----hHHhhcCeEEEEECChhHHHH
Confidence 77778888777443 34455778888776554 4567899999999998873 556677888999999998888
Q ss_pred HHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 241 RVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 241 rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
|.+.|.. .+|...+.....|.....+++. |+.+++..||+|+++.+
T Consensus 135 R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~ 182 (198)
T cd02023 135 RRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGG 182 (198)
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCC
Confidence 7776654 5676666555667666777776 89999999999998653
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-19 Score=156.31 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=101.7
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHH-----HHhcc--cCCCCcccccCCCCCCceeEEEeCCCCCCC-------
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVV-----RRINK--IWPQKASSFDSQVKPPDVATVLPMDGFHLY------- 137 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~-----G~l~~--~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~------- 137 (287)
+++ +.++.|.+++|.|.||||||||++.+. ..+.. ..|..++...+.... ..+-++.|.+....
T Consensus 12 ~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~vdq~pi~~~~rs~~~t 90 (261)
T cd03271 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHI-DKVIVIDQSPIGRTPRSNPAT 90 (261)
T ss_pred CCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCccccccccccc-CceEEecCCcCCCCCCCcHHH
Confidence 666 899999999999999999999998653 11110 003222222211111 11223333321110
Q ss_pred -------------------------------------cccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCC
Q 023126 138 -------------------------------------LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGS 177 (287)
Q Consensus 138 -------------------------------------~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~ 177 (287)
...+|+.|++.+..... ...+..+.++.++. ..+
T Consensus 91 y~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~------~~~~~~~~L~~vgL~~l~l~ 164 (261)
T cd03271 91 YTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP------KIARKLQTLCDVGLGYIKLG 164 (261)
T ss_pred HHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh------hHHHHHHHHHHcCCchhhhc
Confidence 01245555554433221 13455667777774 246
Q ss_pred CCCCCCCcccCCchhhhhhhccC---ccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 178 VYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 178 ~~~~~lSgG~~qrv~ia~al~~~---a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++.+|||||+||+++|++++.+ ++++++|||+..||. .+++.+.++.+ ..|++||+++++..
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 78889999999999999999985 699999999999998 34444444433 24699999998755
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-18 Score=153.73 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=47.0
Q ss_pred CCCCCCCCCcccCCchhhhhhhc----cCccEEEEcCcccCCCh----hhHHHHHHhhc-Cce-EEEeCHHHHH
Q 023126 176 GSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFD-EKW-FIEVDLDTAM 239 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al~----~~a~~li~d~~~lllDe----~~~~~l~~~~~-~~i-~vtHd~~~~~ 239 (287)
.+.++..||+||+||+++|++++ .+++++++|+++..+|. .+++.+.++.+ ..+ +++|+ .++.
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~-~~~~ 224 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR-PELL 224 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC-HHHH
Confidence 45678899999999999999996 35899999999999999 44555555543 334 44555 4444
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-18 Score=152.28 Aligned_cols=189 Identities=24% Similarity=0.324 Sum_probs=140.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 160 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~ 160 (287)
.-++||.|++|||||||++.|..++. ... ....+.++++|+|+.++..+.. + .....+|.|.++
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~---~~~---------~~~~v~vi~~DdFy~~~~~l~~--~--~l~~~kg~Pes~ 149 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLS---RWP---------EHPKVELVTTDGFLYPNAVLEE--R--GLMKRKGFPESY 149 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---hhC---------CCCceEEEeccccccCHHHHhh--h--hccccCCCcccc
Confidence 35899999999999999999999885 211 0123788999999876543221 1 011246778899
Q ss_pred hHHHHHHHHHHhccCCC-CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh--hHHHHHHhhcCceEEEeCHHH
Q 023126 161 NPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKWFIEVDLDT 237 (287)
Q Consensus 161 ~~~~~~~~l~~l~~~~~-~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~--~~~~l~~~~~~~i~vtHd~~~ 237 (287)
|.+.+.+.|..+..+.. ..+|.||.-...++.-....+.+++++|+||.+++.++. .|..+.++++..||++-+.+.
T Consensus 150 D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~ 229 (311)
T PRK05439 150 DMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDL 229 (311)
T ss_pred cHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHH
Confidence 99999999999987664 778888888777764444455678999999999887654 578889999999999999999
Q ss_pred HHHHHhhcccc----------------CCChHH----HHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 238 AMQRVLKRHIS----------------TGKPPD----VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 238 ~~~rv~gr~v~----------------~G~~~e----v~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
+.+|.+.|.+. .|.+.+ .+...|.....|+.+ ||+|++.+||+|+++-
T Consensus 230 ~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~ 298 (311)
T PRK05439 230 IEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKG 298 (311)
T ss_pred HHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCC
Confidence 87755533321 233333 334556678899995 9999999999999864
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-18 Score=162.90 Aligned_cols=173 Identities=13% Similarity=0.027 Sum_probs=125.1
Q ss_pred CCccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 49 QPVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
+..+.++|+++.-.+ +..+ ++. +.+++|+.+-|.|+||||||||+|+|+|+-+ --+|+|..-. ...+
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll-----~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~---~~~~ 458 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLL-----SELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPA---DSAL 458 (604)
T ss_pred cceeEEeeeeEECCCCCeee-----ccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCC---CCce
Confidence 577888888888765 4555 777 9999999999999999999999999999987 5678776542 2337
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--------CCCCCCCCCCcccCCchhhhhhhc
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--------QGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--------~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
-|+||.+|... -|.+|-+.++.. ......+.+.+.|..++. ..+.--..||+|||||+++|+.+.
T Consensus 459 lflpQ~PY~p~---GtLre~l~YP~~----~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL 531 (604)
T COG4178 459 LFLPQRPYLPQ---GTLREALCYPNA----APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL 531 (604)
T ss_pred EEecCCCCCCC---ccHHHHHhCCCC----CCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH
Confidence 89999987433 255554443211 112455667777777662 122223389999999999999999
Q ss_pred cCccEEEEcCcccCCChhhHHHHHHhhc----C--ceEEEeCHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFD----E--KWFIEVDLDTAM 239 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe~~~~~l~~~~~----~--~i~vtHd~~~~~ 239 (287)
++|+.+++||-+..+||+....+.++.+ . .|.|.|......
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~ 578 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWN 578 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHH
Confidence 9999999999999999954444444333 2 246677766543
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=143.38 Aligned_cols=183 Identities=25% Similarity=0.372 Sum_probs=129.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~ 158 (287)
++|+++||+|+||||||||++.|+++++ + ..++++++|+++.....+...+. ....++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---~-------------~~~~~i~~D~~~~~~~~~~~~~~---~~~~~~~~~ 64 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---K-------------LEIVIISQDNYYKDQSHLEMAER---KKTNFDHPD 64 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc---c-------------cCCeEecccccccChhhCCHHHh---cCCCCCCcc
Confidence 5799999999999999999999999986 3 12678899987544322221111 111233445
Q ss_pred CchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHH
Q 023126 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~ 238 (287)
..+.+.+.+.++.+..+.....+.|+.....+.. ......+..++|+|+.+++++ +.+.+.++..|+++.+.+..
T Consensus 65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~----~~~~~~~d~~I~v~~~~~~~ 139 (207)
T TIGR00235 65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFD----ERLRDLMDLKIFVDTPLDIR 139 (207)
T ss_pred HhHHHHHHHHHHHHHCCCCEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhch----HhHHHhCCEEEEEECChhHH
Confidence 5666777788887776666666666554433321 112234578999999988876 35667788889999999999
Q ss_pred HHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 239 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 239 ~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
..|++.|.. ..|...+...+.|....++++. ++.|.+.+||+|+++.
T Consensus 140 l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~ 188 (207)
T TIGR00235 140 LIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEG 188 (207)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCC
Confidence 888886654 4676666656666667778776 8899999999999853
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-18 Score=148.58 Aligned_cols=145 Identities=13% Similarity=0.079 Sum_probs=93.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc-------CCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-------SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~-------~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
.+|++++|+||||||||||+++|++.+.+ +..+.... ........+++.+|+....+ ++..+.
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~----~~~r~~---- 95 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY----RVERSR---- 95 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCccEEEEEEEEECCeEE----EEEEec----
Confidence 35889999999999999999999964421 44333221 11222344788887753211 222211
Q ss_pred HhcCCCCCchHHHHHHH--HHH--hccCCCCCCCCCCcccCCchhhhhhhcc----------CccEEEEcCcccCCChh-
Q 023126 152 ARRGAPWTFNPLLLLNC--LKN--LRNQGSVYAPSFDHGVGDPVEDDILVGL----------QHKVVIVDGNYLFLDGG- 216 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~--l~~--l~~~~~~~~~~lSgG~~qrv~ia~al~~----------~a~~li~d~~~lllDe~- 216 (287)
+. +.+.+.+. +.. +....+.++..||+||+||+++|++++. +++++++|+++..+|..
T Consensus 96 ---gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~ 168 (213)
T cd03279 96 ---GL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEA 168 (213)
T ss_pred ---CC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHH
Confidence 22 11222111 111 2234467888999999999999999974 56899999999999983
Q ss_pred ---hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 217 ---VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 217 ---~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.+.+.++.+ ..|++||+++.+..
T Consensus 169 ~~~~~~~l~~~~~~~~tii~itH~~~~~~~ 198 (213)
T cd03279 169 LEAVATALELIRTENRMVGVISHVEELKER 198 (213)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECchHHHHh
Confidence 4444444433 34689999987754
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-17 Score=139.56 Aligned_cols=183 Identities=26% Similarity=0.387 Sum_probs=128.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~ 158 (287)
.++.+++|.|+||||||||++.|++.+. . ..+.++++|.++.....++..+. ....++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---~-------------~~~~~i~~D~~~~~~~~~~~~~~---~~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---D-------------ESIAVIPQDSYYKDQSHLSFEER---VKTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---C-------------CceEEEeCCccccCcccCCHHHh---cccCccCcc
Confidence 4678999999999999999999999874 1 12788999988665432222221 112344566
Q ss_pred CchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHH
Q 023126 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~ 238 (287)
+.+.+.+.+.|..+........+.++.....+..- .....+..++++|+.+++.++ .+.+.++..|+++-+.+..
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~----~~~~~~d~~I~v~~~~~~~ 139 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDE----RLRDLMDIKIFVDTPLDIR 139 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCC-eEEeCCCCEEEEEeehhcCch----hHhhhhceeEEEeCChhHH
Confidence 67788888888888765555555443322222211 112344679999999988753 5667788899999999999
Q ss_pred HHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 239 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 239 ~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
..|++.|.. .+|...+.+.++|.....+.+. |++|.+.+||+|+++.
T Consensus 140 ~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~ 188 (209)
T PRK05480 140 LIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred HHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCC
Confidence 888887765 5577666666677766677776 9999999999999853
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-18 Score=160.26 Aligned_cols=190 Identities=19% Similarity=0.193 Sum_probs=145.7
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
...|++++++++..- .+ +++ |.+++|||+||.|--|||+|-|++.|.|..+ +++|+|.++|....
T Consensus 259 ~~~~~l~v~~l~~~~----~~-----~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~ 326 (500)
T COG1129 259 IGEPVLEVRNLSGGG----KV-----RDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIR 326 (500)
T ss_pred CCCcEEEEecCCCCC----ce-----eCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCC
Confidence 456777788775443 23 556 9999999999999999999999999999888 89999999997432
Q ss_pred -------ceeEEEeCCCCC-CCcccCCccccHHHHH-HhcC----CCCCchHHHHHHHHHHhc---cCCCCCCCCCCccc
Q 023126 124 -------DVATVLPMDGFH-LYLSQLDAMEDPKEAH-ARRG----APWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGV 187 (287)
Q Consensus 124 -------~~i~~v~qd~~~-~~~~~ltv~e~i~~~~-~~~~----~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~ 187 (287)
.-++|++.|.-. -....+++.+|+.+.. ..+. .......+.+.++.+.++ ...+.++..||||.
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGN 406 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN 406 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchh
Confidence 238999988421 1112378999998762 1111 122223334566666676 34567888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcCc---eEEEeCHHHHHH---HHh----hcccc
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~---i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
||+|.||+++..+|++||+|+|+-..|- ++.+.++++.+.+ +++|-+++++.. |++ ||++.
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998 7778888887763 699999999987 766 77764
|
|
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=159.72 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=126.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 161 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~ 161 (287)
-+|||.||||||||||++.|++.++ . ++.+++|+++.... . ....+..+...+
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp----~--------------vgvIsmDdy~~~~~------~---i~~nfD~P~a~D 118 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP----S--------------IAVISMDNYNDSSR------I---IDGNFDDPRLTD 118 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC----C--------------cEEEEEcceecchh------h---hCccCCChhhcc
Confidence 5899999999999999999999873 2 45677787642210 0 112234455566
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHH-
Q 023126 162 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ- 240 (287)
Q Consensus 162 ~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~- 240 (287)
.+.+.+.+..+..+....+|.|+.-...|..-......+++++|+|+.+++.+ .++++++..||++.+.+..+.
T Consensus 119 ~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlkIFVDtdvDirL~R 193 (656)
T PLN02318 119 YDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLRVSVTGGVHFDLVK 193 (656)
T ss_pred hhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEEEEEcCCccHHHHH
Confidence 67777788888877777778777776666532223456789999999999864 789999999999977777666
Q ss_pred HHhhccccCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEecc
Q 023126 241 RVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 241 rv~gr~v~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 284 (287)
|+..++.++|...+-+..++....+|+++ ||+|++++||+|+.+
T Consensus 194 RI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 194 RVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEec
Confidence 44455667787666555566667899998 999999999999954
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=156.33 Aligned_cols=171 Identities=11% Similarity=-0.019 Sum_probs=110.0
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~ 130 (287)
+...+..+.||++..+ .+- +++..|..+||+|+||+|||||+|+|+.-.-...|..-++. .-+++
T Consensus 81 i~~~~fdLa~G~k~LL-----~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~---------g~~t~ 146 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILL-----NKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVR---------GDDTE 146 (582)
T ss_pred eeeeeeeeeecchhhh-----cCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhee---------ccchH
Confidence 4455788899999888 777 99999999999999999999999999971100001111110 00011
Q ss_pred CCCCCCCcccCCccccHHHHHHhcCCCCCchHHHH-HHHHHHhc---cCCCCCCCCCCcccCCchhhhhhhccCccEEEE
Q 023126 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL-LNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (287)
Q Consensus 131 qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~-~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~ 206 (287)
..... ...++...+ +.............+.+ .++|..+| +...++..+||||+|+|+++|+|+..+|++|++
T Consensus 147 ~~~~~-l~~D~~~~d---fl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 147 ALQSV-LESDTERLD---FLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred HHhhh-hhccHHHHH---HHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 00000 000111111 11111111111122223 33677777 344578889999999999999999999999999
Q ss_pred cCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 207 DGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 207 d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+|+--||-.....|...+. +.++||||..++-.
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNT 260 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHH
Confidence 99999999866666666554 35799999988766
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-18 Score=172.01 Aligned_cols=185 Identities=14% Similarity=0.085 Sum_probs=138.0
Q ss_pred cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----CceeEEEeCCCCC
Q 023126 62 KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFH 135 (287)
Q Consensus 62 ~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~~i~~v~qd~~~ 135 (287)
+.+..+ +++ =-++||...||+|+|||||||||++|+|..... -.+|+|.++|... ++.+||+.|++.+
T Consensus 802 ~~~qLL-----~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH 875 (1391)
T KOG0065|consen 802 GTRQLL-----NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFARVSGYVEQQDIH 875 (1391)
T ss_pred cceEhh-----hcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhccccceeeccccc
Confidence 445555 777 569999999999999999999999999975311 2467888988654 4669999999888
Q ss_pred CCcccCCccccHHHHHHhcCC---CCCchHHHHHHHHHHhccC--CCCCCC----CCCcccCCchhhhhhhccCc-cEEE
Q 023126 136 LYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDILVGLQH-KVVI 205 (287)
Q Consensus 136 ~~~~~ltv~e~i~~~~~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~----~lSgG~~qrv~ia~al~~~a-~~li 205 (287)
.+ ++||+|-+.+....+-. +..+..+.++++++.++.. .+.-+. -||.+||+|+.|+.-|+.+| -+|+
T Consensus 876 ~~--~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 876 SP--ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred Cc--ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 75 49999999997765522 2233345678888877733 444444 59999999999999999988 8899
Q ss_pred EcCcccCCCh----hhHHHHHHhhcC--ceEEE-eCHHH-HHH---HHh-----hccccCCChHH
Q 023126 206 VDGNYLFLDG----GVWKDVSSMFDE--KWFIE-VDLDT-AMQ---RVL-----KRHISTGKPPD 254 (287)
Q Consensus 206 ~d~~~lllDe----~~~~~l~~~~~~--~i~vt-Hd~~~-~~~---rv~-----gr~v~~G~~~e 254 (287)
+|||+..||. -+.+.++++.+. .|+.| |.+.. +.+ |++ |+.+..|+..+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999998 455667777664 35544 66553 333 555 78887777665
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-17 Score=141.14 Aligned_cols=143 Identities=13% Similarity=0.003 Sum_probs=96.9
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHH----HHhcccCCCCcccc-----cCCCCCCceeEEEeCCCC-CCC--cccCCc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASSF-----DSQVKPPDVATVLPMDGF-HLY--LSQLDA 143 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~----G~l~~~~p~~G~i~-----~~~~~~~~~i~~v~qd~~-~~~--~~~ltv 143 (287)
+.+.+| +++|+||||||||||+++|. |... |++|.+. +........+++.+|++. ..+ ...+++
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 567777 99999999999999999996 6555 7776432 111223345888888752 111 111355
Q ss_pred cccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCc------hhhhhhhccCccEEEEcCcccCCChh-
Q 023126 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGG- 216 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qr------v~ia~al~~~a~~li~d~~~lllDe~- 216 (287)
++|+.+. + ...+.+.+ +..+..||+||+|| ++++++++.+++++++|+++..+|+.
T Consensus 94 ~~~~~~~------~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~ 156 (204)
T cd03240 94 LENVIFC------H----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN 156 (204)
T ss_pred hhceeee------c----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH
Confidence 5555321 1 12222222 66788999999996 67888899999999999999999973
Q ss_pred ----hHHHHHHhhc----CceEEEeCHHHHH
Q 023126 217 ----VWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 217 ----~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
+.+.+.++.+ ..|++||+++...
T Consensus 157 ~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 157 IEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 3344444443 2479999988764
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-18 Score=148.82 Aligned_cols=157 Identities=11% Similarity=0.053 Sum_probs=95.9
Q ss_pred cccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCc
Q 023126 60 QNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 138 (287)
Q Consensus 60 ~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~ 138 (287)
.|+....+ +++ + +++||+||||||||||+++|.-.+. .+.... ....++++++.....+
T Consensus 13 ~~~~~~~l-----~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G---~~~~~~------~~~~i~~~~~~~~~~~- 72 (212)
T cd03274 13 SYAGEQVI-----GPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG---FRASKM------RQKKLSDLIHNSAGHP- 72 (212)
T ss_pred cCCCCeee-----ccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc---cCHHHh------hhhhHHHHhcCCCCCC-
Confidence 55555555 544 4 7999999999999999999985543 211100 1123566666543222
Q ss_pred ccCCccccHHHHHH--------hcCCCCCchH-----HHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhcc----Cc
Q 023126 139 SQLDAMEDPKEAHA--------RRGAPWTFNP-----LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QH 201 (287)
Q Consensus 139 ~~ltv~e~i~~~~~--------~~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~----~a 201 (287)
.+++.++..+... .++....... +.+.+.+ .+....+.++..||+||+||+++|++++. ++
T Consensus 73 -~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~-~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p 150 (212)
T cd03274 73 -NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIA-QMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPT 150 (212)
T ss_pred -CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEee-ccccccccchhhcCHHHHHHHHHHHHHHhcccCCC
Confidence 2555555443221 1222211100 1111111 12344566778999999999999998863 57
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTA 238 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~ 238 (287)
+++++|+++..+|. .+++.++++.+ .+|++||+.+..
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~ 193 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMF 193 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHH
Confidence 99999999999998 44555555533 247999996543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=139.67 Aligned_cols=207 Identities=14% Similarity=0.163 Sum_probs=142.9
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccccCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVK------ 121 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-~~G~i~~~~~~------ 121 (287)
|++.+.+++..+......+.+ .|.+ +++.+||+-|++|+||||||-.+|.|.|..+.-|- +..+.++++.+
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~-VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKA-VDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CcccccceEEEEecCCCceEe-eeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 566777787777654444333 3666 99999999999999999999999999998874442 23334444432
Q ss_pred ------CCceeEEEeCCCCCCCcccCCccccHHHHH--Hhc-CC---CCCchHHHHHHHHHHhccCC-----CCCCCCCC
Q 023126 122 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH--ARR-GA---PWTFNPLLLLNCLKNLRNQG-----SVYAPSFD 184 (287)
Q Consensus 122 ------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~--~~~-~~---~~~~~~~~~~~~l~~l~~~~-----~~~~~~lS 184 (287)
..+.+++++|++....++..++...+.... ..+ |. .......++.++|.++|... ..++.+|-
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 234588999998776655433322221110 001 10 01234567788898998432 24777999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---Cc-eEEEeCHHHHHHH---H--h--hccccC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EK-WFIEVDLDTAMQR---V--L--KRHIST 249 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~-i~vtHd~~~~~~r---v--~--gr~v~~ 249 (287)
-|+-|+|+||+|++.++|+||.|+++--++. .+++.+..+.+ .. ++++||+..+.++ + + |+-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 9999999999999999999999999999998 34444444433 23 5899999998882 2 1 888888
Q ss_pred CChHHHHH
Q 023126 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~ev~~ 257 (287)
+..++++.
T Consensus 241 a~~e~l~~ 248 (330)
T COG4170 241 APSEELVT 248 (330)
T ss_pred cchhHHhc
Confidence 88777664
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-17 Score=151.82 Aligned_cols=188 Identities=12% Similarity=0.013 Sum_probs=121.3
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEE
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 128 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~ 128 (287)
.-+.+.++++.|.+...+ .++ +.+.+|+.+||+|+|||||||++++|.|-.. |..-.+ .+
T Consensus 74 ~dvk~~sls~s~~g~~l~-----kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~p~~~-----------d~ 134 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGVELI-----KDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PIPEHI-----------DF 134 (614)
T ss_pred ccceeeeeeeccCCceee-----eeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CCCccc-----------ch
Confidence 357788999999999999 888 9999999999999999999999999999887 643221 11
Q ss_pred EeCCCCCCCcccCCcccc----------HHHHHHhcCC--CC------------------CchHHHHHHHHHHhc---cC
Q 023126 129 LPMDGFHLYLSQLDAMED----------PKEAHARRGA--PW------------------TFNPLLLLNCLKNLR---NQ 175 (287)
Q Consensus 129 v~qd~~~~~~~~ltv~e~----------i~~~~~~~~~--~~------------------~~~~~~~~~~l~~l~---~~ 175 (287)
.+.+....+...-++... ++.....+.. .. .....++.++|..++ ..
T Consensus 135 y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 135 YLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred hhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 111111111110011111 1111111100 00 001112223333333 23
Q ss_pred CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh---cC--ceEEEeCHHHHHH---HHh----
Q 023126 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---DE--KWFIEVDLDTAMQ---RVL---- 243 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~---~~--~i~vtHd~~~~~~---rv~---- 243 (287)
.++.+..|||||++|+++|++|...|.+|++|+|+.-||-+....|.+.+ +. .++++|+.+++-. .++
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecc
Confidence 45778899999999999999999999999999999999986555555443 34 4688999999887 555
Q ss_pred hccc-cCCChHHHH
Q 023126 244 KRHI-STGKPPDVA 256 (287)
Q Consensus 244 gr~v-~~G~~~ev~ 256 (287)
++.+ ..|.-+...
T Consensus 295 kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYV 308 (614)
T ss_pred cceeeecCCHHHHh
Confidence 3433 456655544
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=135.54 Aligned_cols=142 Identities=11% Similarity=0.033 Sum_probs=94.9
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-----cc----cccCCCCCCceeEEEeCCCCCCCcccCCcccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS----SFDSQVKPPDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~-----G~----i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
+.+.+| +.+|+||||||||||+..|...+. .+. |. +...+. ....+.+.+++.... +|
T Consensus 17 l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~-~~~~i~~~~~~~~~~--------~~ 83 (198)
T cd03276 17 IEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGE-SSAKITVTLKNQGLD--------AN 83 (198)
T ss_pred EecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCC-CeEEEEEEEEcCCcc--------CC
Confidence 556665 778999999999999999987654 332 21 111111 123355555542211 11
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhh----ccCccEEEEcCcccCCCh----hhH
Q 023126 147 PKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVW 218 (287)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al----~~~a~~li~d~~~lllDe----~~~ 218 (287)
.......+.+.++++. ....+.++.+||+||+||+++++++ +.+++++++||++..+|. .++
T Consensus 84 ---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~ 153 (198)
T cd03276 84 ---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIST 153 (198)
T ss_pred ---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHH
Confidence 0111123456666666 5556778889999999999999998 589999999999999998 355
Q ss_pred HHHHHhhc------CceEEEeCHHHHHH
Q 023126 219 KDVSSMFD------EKWFIEVDLDTAMQ 240 (287)
Q Consensus 219 ~~l~~~~~------~~i~vtHd~~~~~~ 240 (287)
+.+.+... ..++++|+++.+..
T Consensus 154 ~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 154 DLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred HHHHHHHhcCCCcEEEEEECCccccccc
Confidence 55655432 23577899999876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-16 Score=158.85 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=72.6
Q ss_pred HHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccCc---cEEEEcCcccCCCh----hhHHHHHHhhc---CceEE
Q 023126 165 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFI 231 (287)
Q Consensus 165 ~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a---~~li~d~~~lllDe----~~~~~l~~~~~---~~i~v 231 (287)
..+.|+.++.. .++++.+|||||+||+.+|++++.++ .++++||++..||. .+++.+.++.+ .+|++
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35566666643 46788899999999999999999988 99999999999999 44455555443 34699
Q ss_pred EeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 232 EVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 232 tHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
||+++++.. +++ |++++.|+++++..
T Consensus 890 tH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 890 EHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999865 443 57888999888764
|
|
| >PLN02348 phosphoribulokinase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=139.01 Aligned_cols=190 Identities=23% Similarity=0.326 Sum_probs=130.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccC--CCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 159 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~--p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~ 159 (287)
-+|||.|++|||||||++.|...+.... |..|.- -.+......+..+++|+|+.++. ..+.. .......|.+
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~-~~~~l~~~~~~VI~lDDYh~~dr--~~r~~---~g~t~ldP~a 123 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNP-DSNTLISDTTTVICLDDYHSLDR--TGRKE---KGVTALDPRA 123 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccc-cccccccCceEEEEcccccCCCh--hhHhh---cCCccCCccc
Confidence 4899999999999999999999985110 011100 00011123467899999876532 11000 0001123456
Q ss_pred chHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHH
Q 023126 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 239 (287)
Q Consensus 160 ~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~ 239 (287)
.+.+.+.+.+..+..+.....|.|+.-...+..- ..+.+++++|+|+.+.++|+ .++++++..||++.+.+..+
T Consensus 124 ~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~--e~I~p~~VVIVEGlh~L~~e----~lr~l~D~~IyVd~~~dvrl 197 (395)
T PLN02348 124 NNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP--ELIEPPKILVIEGLHPMYDE----RVRDLLDFSIYLDISDDVKF 197 (395)
T ss_pred ccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc--EEcCCCcEEEEechhhccCc----cccccCcEEEEEECCHHHHH
Confidence 6777888888888877666666665554433321 23556899999999999984 67788899999999999998
Q ss_pred HHHhhcccc-CCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEecc
Q 023126 240 QRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 240 ~rv~gr~v~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 284 (287)
.|.+.|.++ +|...+.+.+.+... .|.+. ||.|++.+||+||+-
T Consensus 198 ~RRI~RD~~eRG~S~EeV~~~i~ar-~pd~~~yI~pqk~~ADiVI~v 243 (395)
T PLN02348 198 AWKIQRDMAERGHSLESIKASIEAR-KPDFDAYIDPQKQYADVVIEV 243 (395)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHhc-CcchhhhcccccccCCEEEEe
Confidence 888878774 787777666667654 55655 999999999999853
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-16 Score=146.73 Aligned_cols=183 Identities=12% Similarity=0.001 Sum_probs=126.6
Q ss_pred CCCCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC
Q 023126 47 NAQPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~ 123 (287)
+.+-+++++++++.--. ...+ ++. +.|..|+-+-|.||||||||+|+++|+|+-+ -.+|.+..-.....
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~li-----e~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~~~ 500 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLI-----ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDGGP 500 (659)
T ss_pred cccceEEeeeeeecCCCCCceee-----eeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccCCC
Confidence 55568888888776544 3344 666 9999999999999999999999999999986 68888754333222
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhc--------cCCC----CC-CCCCCcccCC
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLR--------NQGS----VY-APSFDHGVGD 189 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~--------~~~~----~~-~~~lSgG~~q 189 (287)
..+-|+||-||.... |.++.+.++.... ...+..+.+++.+.|+.++ .+.+ .. ...||+||+|
T Consensus 501 ~~lfflPQrPYmt~G---TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQ 577 (659)
T KOG0060|consen 501 KDLFFLPQRPYMTLG---TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQ 577 (659)
T ss_pred CceEEecCCCCcccc---chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHH
Confidence 448899999885442 6677776653221 1122233445555555544 1222 22 2389999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+++|+.+.++|+.-++||.+..+||++-..+-+..+ +.|-|+|-......
T Consensus 578 RLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 578 RLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred HHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 9999999888999999999988888855555444443 23567787776554
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-16 Score=144.67 Aligned_cols=201 Identities=16% Similarity=0.144 Sum_probs=151.6
Q ss_pred cCCCCccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 46 ANAQPVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
.++.++++++++++.-... ..+ .++ |.|+.|||+||.|-.|-|-+.|+.+|+|+.+ |.+|+|.++|.+.
T Consensus 252 ~pg~~vL~V~~L~v~~~~~~~~v-----~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~ 323 (501)
T COG3845 252 TPGEVVLEVEDLSVKDRRGVTAV-----KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVL 323 (501)
T ss_pred CCCCeEEEEeeeEeecCCCCcee-----eeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEecc
Confidence 3678899999999887643 445 666 9999999999999999999999999999998 8889999998764
Q ss_pred C---------ceeEEEeCCCCC-CCcccCCccccHHHHHHhcC------C-CCCchHHHHHHHHHHhc---cCCCCCCCC
Q 023126 123 P---------DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRG------A-PWTFNPLLLLNCLKNLR---NQGSVYAPS 182 (287)
Q Consensus 123 ~---------~~i~~v~qd~~~-~~~~~ltv~e~i~~~~~~~~------~-~~~~~~~~~~~~l~~l~---~~~~~~~~~ 182 (287)
. .-++|+|.|... -.-..+++.+|+.+...... . .+......+.++++.++ .....++..
T Consensus 324 ~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~ 403 (501)
T COG3845 324 GRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARS 403 (501)
T ss_pred ccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhh
Confidence 1 238999998632 22334899999887543321 1 11122334456666666 344566779
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hcccc
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
||||.+||+-+|+-+..+|++|+...|+-.+|- .+.+.+.+..+. ++++|-|+++++. |+. ||++.
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 999999999999999999999999999999998 344555555554 3699999999988 444 77776
Q ss_pred CCChHH
Q 023126 249 TGKPPD 254 (287)
Q Consensus 249 ~G~~~e 254 (287)
..++++
T Consensus 484 ~~~~~~ 489 (501)
T COG3845 484 IVPPEE 489 (501)
T ss_pred cccccc
Confidence 555544
|
|
| >cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=130.04 Aligned_cols=181 Identities=16% Similarity=0.116 Sum_probs=129.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH---HHhcCC--C
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA---HARRGA--P 157 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~---~~~~~~--~ 157 (287)
++||.|.|||||||+++.|...+. . .| ..+.++.+|+|+.+. .....+..... ..++.+ |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~---~-~g----------~~v~vI~~D~yyr~~-r~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA---R-EG----------IHPAVVEGDSFHRYE-RMEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---h-cC----------CceEEEeccccccCC-chhHHHHHHHHhhcCCCCCCCCc
Confidence 589999999999999999998885 1 11 236789999887643 22222222211 124555 7
Q ss_pred CCchHHHHHHHHHHhccCCCCCCCCCCc------------ccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh
Q 023126 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSg------------G~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~ 225 (287)
.+.+.+.+.+.|..++.+.....+.|.. |....-. .+..++.+++.||-+.++. --...+++++
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~---~~~~p~dvIivEGLhg~~~-~~~~~lr~~~ 141 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE---DLPEDTDLLFYEGLHGGVV-TEGYNVAQHA 141 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc---cccCCCcEEEECCCCcccc-cccHHHHHhC
Confidence 8889999999999998777666666633 3322111 1235689999999984332 0125789999
Q ss_pred cCceEEEeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEec
Q 023126 226 DEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 226 ~~~i~vtHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~ 283 (287)
+.+|||.-+.++...|.+.|++ ++|...|-+...+..+. |.+. ||.|++++||++++
T Consensus 142 DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fq 200 (277)
T cd02029 142 DLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQ 200 (277)
T ss_pred CeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEe
Confidence 9999999999998887777776 67987776555555555 8887 99999999999975
|
PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-16 Score=146.76 Aligned_cols=179 Identities=12% Similarity=0.032 Sum_probs=131.4
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
..-|.+++..+.+.|....- .++..+ +.++--..++++|+||+||||++|++.|.+. |..|.+...+ +.+
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y---~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~---r~r 428 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEY---QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHP---RLR 428 (582)
T ss_pred CCCCeeEEEeeeccCCCcch---hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecc---cce
Confidence 34578888888888876551 122444 7777888999999999999999999999999 9999876654 345
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++|..|....+.. +.+-. +.+....+ |.. ..+.+++.|..+|. .....+..||||||-||++|.....+|.
T Consensus 429 i~~f~Qhhvd~l~--~~v~~-vd~~~~~~--pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph 502 (582)
T KOG0062|consen 429 IKYFAQHHVDFLD--KNVNA-VDFMEKSF--PGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH 502 (582)
T ss_pred ecchhHhhhhHHH--HHhHH-HHHHHHhC--CCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence 8999887543322 22211 22222222 222 45667888888883 3445678999999999999999999999
Q ss_pred EEEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
+|++|+|+--||-+ +.+.|.++...+|+||||.+++..
T Consensus 503 lLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 503 LLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred EEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhh
Confidence 99999999999974 334444455567899999999876
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-16 Score=138.26 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=91.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC--------C-----CCceeEEEeC--CCCCCCcccCCccccH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--------K-----PPDVATVLPM--DGFHLYLSQLDAMEDP 147 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~--------~-----~~~~i~~v~q--d~~~~~~~~ltv~e~i 147 (287)
+++|+||||||||||+.+|.+++. ++.|++...+. . ....+.+.++ ++..... ..++.+..
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~---~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~-~~~~~~~~ 99 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLG---EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTF-RRIITGGS 99 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEE-EEEEECCc
Confidence 899999999999999999999997 77776543221 1 0112333332 2111000 01111110
Q ss_pred HHHHHhcCC-CCCchHHHHHHHHHHhccCC------------------------CCCCCCCCcccCCchhhhhhhcc---
Q 023126 148 KEAHARRGA-PWTFNPLLLLNCLKNLRNQG------------------------SVYAPSFDHGVGDPVEDDILVGL--- 199 (287)
Q Consensus 148 ~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~------------------------~~~~~~lSgG~~qrv~ia~al~~--- 199 (287)
..+.. ........+.+.++.++... +.++.+||+||+||++++++++.
T Consensus 100 ----~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 100 ----SSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred ----eEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 00100 11123344456666655321 12347999999999999999875
Q ss_pred -CccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHH
Q 023126 200 -QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 200 -~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
+++++++|+++..+|.. +.+.+.++.+ ..|++||+.+...
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~ 223 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFS 223 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHh
Confidence 48999999999999983 4455555543 2479999977654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-16 Score=163.80 Aligned_cols=116 Identities=10% Similarity=-0.039 Sum_probs=80.5
Q ss_pred CCccccHHHHHH---hcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhc---cCccEEEEcCccc
Q 023126 141 LDAMEDPKEAHA---RRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYL 211 (287)
Q Consensus 141 ltv~e~i~~~~~---~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~---~~a~~li~d~~~l 211 (287)
+|+.|++.+... .+........+++ +.++.++.. .++++.+|||||+||+++|++++ .+++++++|||+.
T Consensus 763 ~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTs 841 (1809)
T PRK00635 763 KNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTT 841 (1809)
T ss_pred CCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCC
Confidence 566666665432 1121222233344 567777732 46788899999999999999997 5899999999999
Q ss_pred CCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 212 FLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 212 llDe----~~~~~l~~~~~---~~i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
.||. .+++.+.++.+ .+|++||+++.+.. |++ |++++.|+++++..
T Consensus 842 GLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 842 GLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9998 34444444433 24699999999833 332 46788899988764
|
|
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=130.58 Aligned_cols=173 Identities=24% Similarity=0.349 Sum_probs=114.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
++||+|+||||||||++.|+++++ +..| ..+.+|+++.... +.........-.+...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~-------------~vi~~Dd~~~~~~-----~~r~~~g~~~~~p~~~~~ 59 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLV-------------TVICLDDYHSLDR-----KGRKETGITALDPRANNF 59 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---CCce-------------EEEECcccccCCH-----HHHHHhhcccccccchhH
Confidence 589999999999999999999997 5543 3455665533210 111111111111333345
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHH
Q 023126 163 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 242 (287)
Q Consensus 163 ~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv 242 (287)
+.+.+.++.+........|.|+.-...... ...+.+.+++++|+.+++.+ ..++++++..||++.+.+....|.
T Consensus 60 d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~----~~l~~~~D~~I~vd~~~e~r~~r~ 133 (273)
T cd02026 60 DLMYEQLKALKEGQAIEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYD----ERVRELLDFSVYLDISDEVKFAWK 133 (273)
T ss_pred HHHHHHHHHHHCCCCcccccccccCCCcCC--cEEcCCCCEEEEeeehhhCc----hhhhhhccEEEEEECChhHHHHHH
Confidence 556666666666555555555543332211 01234468999999998887 467788899999999999988887
Q ss_pred hhcccc-CCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEec
Q 023126 243 LKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 243 ~gr~v~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~ 283 (287)
+.|.++ +|...+.+.+.+... .+.+. ||.|++.+||+|++
T Consensus 134 i~Rd~~rrG~s~e~v~~~i~~r-~~~~~~~I~P~~~~ADvVI~ 175 (273)
T cd02026 134 IQRDMAERGHSLEDVLASIEAR-KPDFEAYIDPQKQYADVVIQ 175 (273)
T ss_pred HHHHHHHhCCCHHHHHHHHHhh-chhHHHHhccccccCcEEEE
Confidence 877775 576666666666544 55555 99999999999985
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-15 Score=140.43 Aligned_cols=168 Identities=16% Similarity=0.084 Sum_probs=107.6
Q ss_pred ccccccc-cchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc-----------CCCCC--
Q 023126 57 SLVQNKT-SLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-----------SQVKP-- 122 (287)
Q Consensus 57 ~~~~~~~-~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~-----------~~~~~-- 122 (287)
.+.+||. .+.+ -.+...++|.++||+|+||-||||.+|+|+|.+. |.=|+..- .|...
T Consensus 80 ~vHRYg~NgFkL-----~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~pp~wdeVi~~FrGtELq~ 151 (591)
T COG1245 80 VVHRYGVNGFKL-----YRLPTPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYEDPPSWDEVIKRFRGTELQN 151 (591)
T ss_pred ceeeccCCceEE-----ecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCCCCCHHHHHHHhhhhHHHH
Confidence 4556663 3444 4446689999999999999999999999999999 98776321 11100
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ 192 (287)
..++..=+|--...+. -+...+...+.. ......+.++.+.++ ...++.+.+||||+.||++
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk---~~KG~v~elLk~-----~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~a 223 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPK---VVKGKVGELLKK-----VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVA 223 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHH---HhcchHHHHHHh-----hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHH
Confidence 0001100110000000 000111111100 001123445555555 5568899999999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
||.++..+|++.++|++...||- ...+.++++.. .+++|.||+..+-.
T Consensus 224 Iaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 224 IAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred HHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHH
Confidence 99999999999999999999997 45566777765 35789999988755
|
|
| >cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-15 Score=123.33 Aligned_cols=176 Identities=21% Similarity=0.269 Sum_probs=119.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
+++|.|++|||||||++.|+..+. . .| ..+.++++|+|+.+. ... .. ....+..+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~---~-~~----------~~~~~i~~Ddf~~~~--~~~--~~--~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR---V-NG----------IGPVVISLDDYYVPR--KTP--RD--EDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---H-cC----------CCEEEEehhhcccCc--ccc--cc--cCCCCCCCccccH
Confidence 579999999999999999999885 1 11 226789999887653 110 00 0112233333577
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHH-HHHH
Q 023126 163 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT-AMQR 241 (287)
Q Consensus 163 ~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~-~~~r 241 (287)
+.+.+.+..+........+.|+.-..++..-......+..++|+|+.+++.+ .++++++..||++.+.+. .+.|
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~-----~l~~~~d~~I~vd~~~~~~rl~r 135 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-----RLRSLLDIRVAVSGGVHLNRLLR 135 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH-----hHHhhcCEEEEEeCCccHHHHHH
Confidence 7888888877766555666555544444432122345688999999999764 678888999999999998 6666
Q ss_pred Hhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEecc
Q 023126 242 VLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 242 v~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 284 (287)
.+-|.+ ++|...+-..+++. ...+.+. ++.|.+..||+|+++
T Consensus 136 ri~RD~~~rg~~~~~~i~~~~-~~~~~~~~~~~~~~~~ad~~~~~ 179 (179)
T cd02028 136 RVVRDIQFRGYSAELTILMWP-SVPSGEEFIIPPLQEAAIVMFNS 179 (179)
T ss_pred HHHHhHHhhCCCHHHHhhhcc-cccCchhhcCCCchhccceeccC
Confidence 666665 67877765555443 4444454 557789999999874
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). |
| >COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-15 Score=128.00 Aligned_cols=177 Identities=29% Similarity=0.474 Sum_probs=145.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~ 158 (287)
+..-++||.|+-|+||||+++.+.-++.+ ||. ...+..+++|+|++++..+.. ++ .+...|.|.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~-----------~~~v~lvpmDGFhy~n~~L~~-~g---lm~rKGfPe 143 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSR-WPE-----------SPKVDLVTMDGFHYPNAVLDE-RG---LMARKGFPE 143 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhh-CCC-----------CCceEEEeccccccCHhHhhh-cc---ccccCCCCc
Confidence 34469999999999999999999999872 222 123789999999888754431 11 234568899
Q ss_pred CchHHHHHHHHHHhc-cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHH
Q 023126 159 TFNPLLLLNCLKNLR-NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT 237 (287)
Q Consensus 159 ~~~~~~~~~~l~~l~-~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~ 237 (287)
.+|...+.+.+..+. ...+..+|.||.-....+.-+..+..++++||+||..+++|++-|-.+.++++-.|||.-+.+.
T Consensus 144 SyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~ 223 (283)
T COG1072 144 SYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEEL 223 (283)
T ss_pred cccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHH
Confidence 999999999999998 4556889999998888888888888889999999999999999888999999999999999999
Q ss_pred HHHHHhhccccCCChHHHHHHHHHhcCcchHHHH
Q 023126 238 AMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELI 271 (287)
Q Consensus 238 ~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i 271 (287)
+.+|++.|....|.........+..++.++.+..
T Consensus 224 le~wyi~Rfl~~g~~a~~~~~~~~~~~~~~~~~~ 257 (283)
T COG1072 224 LEERYIERFLKFGLTAFEDPASYFHNYAPLSERE 257 (283)
T ss_pred HHHHHHHHHHhcccchhhChhhHhhccCcchHHH
Confidence 9999999888888777776666666667776643
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-15 Score=136.00 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=110.4
Q ss_pred hhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccC-----CCCcccccCCCCCCceeEEEeCCCCCCCcccCCc
Q 023126 70 SQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 70 ~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~-----p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv 143 (287)
-+++++ +.+++|++++|+|+|||||||++++|+|...... |++|.|.+-.... .+++|-.... .++
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~---~a~iPge~Ep----~f~- 468 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV---SALIPGEYEP----EFG- 468 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch---hhccCccccc----ccC-
Confidence 345888 9999999999999999999999999999753221 7888776533221 3344433221 122
Q ss_pred cccHHHHHHhcCCCCCchHHHHHHHHHHhccC----CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----
Q 023126 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG---- 215 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe---- 215 (287)
.+++.. ..+ ....|...+.++|.+.+.. -..+..+||-||+.|+.||.+++..|.+++.|+-...|||
T Consensus 469 ~~tile--hl~--s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~ 544 (593)
T COG2401 469 EVTILE--HLR--SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544 (593)
T ss_pred chhHHH--HHh--hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence 122221 111 1223556677888888732 2346679999999999999999999999999999999999
Q ss_pred hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 216 GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+.+.+.++.. ..+.+||..++..+
T Consensus 545 rVArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 545 RVARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 34444444442 23689999998755
|
|
| >PRK07429 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-14 Score=127.68 Aligned_cols=170 Identities=25% Similarity=0.394 Sum_probs=117.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC----CC
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----AP 157 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~----~~ 157 (287)
-++||.|+||||||||++.|++++. ++. +.++.+|+++.... . + ....+ .+
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~---~~~-------------~~vi~~Dd~~~~~~--~--~-----r~~~g~~~l~p 63 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLG---EEL-------------VTVICTDDYHSYDR--K--Q-----RKELGITALDP 63 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhc---cCc-------------eEEEEecccccCCH--H--H-----HHhcCCcccCc
Confidence 4899999999999999999999997 543 34566776642210 0 0 11111 23
Q ss_pred CCchHHHHHHHHHHhccCCCCCCCC--CCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCH
Q 023126 158 WTFNPLLLLNCLKNLRNQGSVYAPS--FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 235 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~--lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~ 235 (287)
...+.+.+.+.++.+........+. .+.|+... - ....+.+++|+|+.+.+++ ..++++++..||++-+.
T Consensus 64 ~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~--~--~~i~p~~iVIvEG~~~l~~----~~lr~~~D~~I~Vda~~ 135 (327)
T PRK07429 64 RANNLDIMYEHLKALKTGQPILKPIYNHETGTFDP--P--EYIEPNKIVVVEGLHPLYD----ERVRELYDFKVYLDPPE 135 (327)
T ss_pred cchHHHHHHHHHHHHHCCCceecceeecCCCCcCC--c--EecCCCcEEEEechhhcCc----HhHHhhCCEEEEEECCH
Confidence 4455667777777777655544443 34443221 1 1233468999999998887 36778889999999999
Q ss_pred HHHHHHHhhcccc-CCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 236 DTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 236 ~~~~~rv~gr~v~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
++...|.+.|..+ +|...+.+.+++... .+.+. ||.|++.+||+|++..
T Consensus 136 evr~~Rri~Rd~~rrG~s~eei~~~i~~r-~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 136 EVKIAWKIKRDMAKRGHTYEQVLAEIEAR-EPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHh-CccHhhhhcccccCCCEEEEcC
Confidence 9998888877775 577667666666654 45554 9999999999998654
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=122.24 Aligned_cols=186 Identities=14% Similarity=-0.039 Sum_probs=118.5
Q ss_pred cCCCCccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC
Q 023126 46 ANAQPVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 123 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~ 123 (287)
+..+.++++.++++.|... ..+ -++ +.+..|....++|.||||||||+|+|+|--- ...|-|.+.|...-
T Consensus 8 ~~~~~aievsgl~f~y~~~dP~~-----~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaF 79 (291)
T KOG2355|consen 8 AVSDFAIEVSGLQFKYKVSDPIF-----FDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAF 79 (291)
T ss_pred hcccceEEEeccEEecccCCceE-----EEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCcc
Confidence 4567789999999999743 333 455 8899999999999999999999999999754 44566777665432
Q ss_pred ce--------eEEEeCCCC--CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhh
Q 023126 124 DV--------ATVLPMDGF--HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 124 ~~--------i~~v~qd~~--~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~i 193 (287)
+. ..|+...=. .....+......+.-....++... .+.++-+++++.+.....-+...+|-|||+||.|
T Consensus 80 hDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQi 158 (291)
T KOG2355|consen 80 HDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQI 158 (291)
T ss_pred ccccccccCceeEecccccccccccccccccccccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHH
Confidence 21 222211100 000000011111111112223221 1234444444444444455667999999999999
Q ss_pred hhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++-|..+-++|++|+-++=||- .+++.+++..+ .++|.||-.+-...
T Consensus 159 cMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~ 213 (291)
T KOG2355|consen 159 CMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLET 213 (291)
T ss_pred HHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhh
Confidence 9999999999999999999997 33344444333 24699999887776
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-14 Score=147.32 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=68.4
Q ss_pred HHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhcc---CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEE
Q 023126 165 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFI 231 (287)
Q Consensus 165 ~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~---~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~v 231 (287)
..+.++.++.. .++++.+|||||+||+.+|++++. ++.++++||++..||. .+++.+.++.+ .+|++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34556666632 467888999999999999999986 4899999999999999 34455555543 24699
Q ss_pred EeCHHHHHH--HHh----------hccccCCChHHH
Q 023126 232 EVDLDTAMQ--RVL----------KRHISTGKPPDV 255 (287)
Q Consensus 232 tHd~~~~~~--rv~----------gr~v~~G~~~ev 255 (287)
+|+++++.. +++ |++++.|+++++
T Consensus 888 ~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 888 EHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred eCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999998865 433 467788887764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-15 Score=138.86 Aligned_cols=148 Identities=14% Similarity=0.029 Sum_probs=97.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
... +.|++|-.+-|.||||||||+|+++|.|+.+ -..|.... +....+.|+||-||.-. -|.++.+.++.
T Consensus 499 ~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~---P~~~~mFYIPQRPYms~---gtlRDQIIYPd 569 (728)
T KOG0064|consen 499 PKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSI---PRPNNIFYIPQRPYMSG---GTLRDQIIYPD 569 (728)
T ss_pred cceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeec---CCCcceEeccCCCccCc---CcccceeecCC
Confidence 566 8899999999999999999999999999986 44554433 23445999999987432 24555554421
Q ss_pred -----HhcCCCCCchHHHHHHHHHHhc-------c---CCCCCCC-CCCcccCCchhhhhhhccCccEEEEcCcccCCCh
Q 023126 152 -----ARRGAPWTFNPLLLLNCLKNLR-------N---QGSVYAP-SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 152 -----~~~~~~~~~~~~~~~~~l~~l~-------~---~~~~~~~-~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe 215 (287)
...|.. .+.+..+|..+. . ..-..+. .||||+|||+++ ||+..+.|.+.+|||
T Consensus 570 S~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m-------ARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 570 SSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM-------ARMFYHRPKYALLDE 638 (728)
T ss_pred cHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH-------HHHHhcCcchhhhhh
Confidence 122222 122233333322 1 1112333 799999999999 888888889999998
Q ss_pred -------hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 216 -------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++-..+-+..+ ..+-|||.+.....
T Consensus 639 cTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred hhcccccchHHHHHHHHHhcCceEEEeecCccHHHH
Confidence 33333333332 23578999988776
|
|
| >PRK15453 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-13 Score=120.91 Aligned_cols=186 Identities=15% Similarity=0.069 Sum_probs=124.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCc-ccCCccccHHHH---HHhcC
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPKEA---HARRG 155 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~-~~ltv~e~i~~~---~~~~~ 155 (287)
+.-++||.|.+||||||+++.|+..+. . .| ..+.++.+|.|+.++ .+++. ..... ..++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~-~~----------~~~~vi~~D~yh~ydr~~~~~--~~~~~~r~g~nfd 67 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---R-EN----------INAAVVEGDSFHRYTRPEMKA--AIAKARAAGRHFS 67 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---h-cC----------CCeEEEecccccccChhhHhh--hhHHHHhcCCCCC
Confidence 456899999999999999999998775 1 11 125788999887532 22221 11111 11344
Q ss_pred C--CCCchHHHHHHHHHHhccCCCCCCCCCC--ccc---CCchh--h--hhhhccCccEEEEcCcccCCChhhHHHHHHh
Q 023126 156 A--PWTFNPLLLLNCLKNLRNQGSVYAPSFD--HGV---GDPVE--D--DILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (287)
Q Consensus 156 ~--~~~~~~~~~~~~l~~l~~~~~~~~~~lS--gG~---~qrv~--i--a~al~~~a~~li~d~~~lllDe~~~~~l~~~ 224 (287)
. |.+.+.+.+.+.|..++.......+.|. ..+ -.+.. + -..+..++++++.||.+.+.. .-...++++
T Consensus 68 hf~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~-~~~~~lr~~ 146 (290)
T PRK15453 68 HFGPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVV-TDQVDVAQH 146 (290)
T ss_pred CCCCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccc-cccHHHHHh
Confidence 5 7788899999999888754443333332 111 00000 0 001224589999999987643 112578899
Q ss_pred hcCceEEEeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEec
Q 023126 225 FDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 225 ~~~~i~vtHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~ 283 (287)
.+..|+|.-+.++...|.+.|++ ++|.+.|-+...+.... |.+. ||.|++++||+.+.
T Consensus 147 ~DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 147 VDLLIGVVPIVNLEWIQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred CCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 99999999999988887887876 67988876655555554 8887 99999999999864
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=138.34 Aligned_cols=185 Identities=15% Similarity=0.141 Sum_probs=135.5
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----CceeEEEeCCCCCCCcccCCcccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
+++ ..+++|+.+-++||.|||||||++.|+|.+....-..|+|.++|.+. +..++|.+|++.+.+. |||+|.
T Consensus 132 ~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~--lTVreT 209 (1391)
T KOG0065|consen 132 KDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE--LTVRET 209 (1391)
T ss_pred cCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce--eEEeeh
Confidence 555 77999999999999999999999999998875434466888888542 4568999999887765 999999
Q ss_pred HHHHHHhcCCCCCc----hHHH----HHHHHHHhcc-------CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCccc
Q 023126 147 PKEAHARRGAPWTF----NPLL----LLNCLKNLRN-------QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (287)
Q Consensus 147 i~~~~~~~~~~~~~----~~~~----~~~~l~~l~~-------~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~l 211 (287)
+.+..+..+..... ..++ .+.+++.+|. ..+...+-.|||||+||.++-+++.+++++..|+..-
T Consensus 210 ldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~ 289 (1391)
T KOG0065|consen 210 LDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITR 289 (1391)
T ss_pred hhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccc
Confidence 99987765442111 1221 2355666662 2345677899999999999999999999999999999
Q ss_pred CCCh----hhHHHHHHhhc---CceEEE--eCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 212 FLDG----GVWKDVSSMFD---EKWFIE--VDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 212 llDe----~~~~~l~~~~~---~~i~vt--Hd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
.||- ++.+.++.+.+ .+.+++ ...++... .++ |+++..|+.+++..-+
T Consensus 290 GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yF 353 (1391)
T KOG0065|consen 290 GLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYF 353 (1391)
T ss_pred cccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHH
Confidence 9998 45555555543 344333 33333333 444 8999999888876644
|
|
| >cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+) | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=110.98 Aligned_cols=162 Identities=22% Similarity=0.234 Sum_probs=110.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
++||.|++|||||||++.|+..+. . +.++++|+++.+...+....+ ...+++.|.+.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~---~---------------~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP---N---------------CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---C---------------CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 589999999999999999999773 0 567899998877644332211 2235667888899
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcccCCchh-------------hhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCce
Q 023126 163 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (287)
Q Consensus 163 ~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~-------------ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i 229 (287)
+.+.+.|..+........+.+|.+...... -+.....+.+++|+|+.+++.++ .+.++++..|
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I 135 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY 135 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence 999999988876543334444443322111 11123456789999999998874 5778999999
Q ss_pred EEEeCHHHHHHHHhhccccC--CChHHHHHHHHHhcCcchHH
Q 023126 230 FIEVDLDTAMQRVLKRHIST--GKPPDVAKWRIEYNDRPNAE 269 (287)
Q Consensus 230 ~vtHd~~~~~~rv~gr~v~~--G~~~ev~~~~~~~~~~~~~~ 269 (287)
|+.-+.+++.+|.+.|.... |..-.--..||....+|++.
T Consensus 136 fvd~~~d~~~~Rr~~R~~~~~~~~~w~Dp~~yf~~~v~p~y~ 177 (187)
T cd02024 136 FLRVPYETCKRRREARTGYVTLEGFWPDPPGYFDGHVWPMYL 177 (187)
T ss_pred EecCCHHHHHHHHHHcCCccccCcccCCCCcccccccchhHH
Confidence 99999999999887554221 21111122367777778775
|
This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-13 Score=114.91 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=79.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+.+..|++++|.||||||||||+|+|+|...- ...|. .... ..+++|. ...+ ..+++.+++......+
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l--~~~G~------~v~a-~~~~~q~-~~l~-~~~~~~d~l~~~~s~~- 87 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGVNVIL--AQAGA------PVCA-SSFELPP-VKIF-TSIRVSDDLRDGISYF- 87 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHHHHHH--HHcCC------EEec-CccCccc-ceEE-EeccchhccccccChH-
Confidence 56777899999999999999999999987630 01221 1100 1234453 2222 2478888887643221
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhH-----HHHHHhhc---C
Q 023126 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW-----KDVSSMFD---E 227 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~-----~~l~~~~~---~ 227 (287)
.....++.++++.++. ..++++++||++..+|.... ..+..+.+ .
T Consensus 88 ---~~e~~~~~~iL~~~~~------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~t 140 (199)
T cd03283 88 ---YAELRRLKEIVEKAKK------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTI 140 (199)
T ss_pred ---HHHHHHHHHHHHhccC------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 1223456666665541 34899999999999997322 22333332 2
Q ss_pred ceEEEeCHHHHHH
Q 023126 228 KWFIEVDLDTAMQ 240 (287)
Q Consensus 228 ~i~vtHd~~~~~~ 240 (287)
.+++||+++.+..
T Consensus 141 iiivTH~~~~~~~ 153 (199)
T cd03283 141 GIISTHDLELADL 153 (199)
T ss_pred EEEEcCcHHHHHh
Confidence 3699999998755
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=126.40 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=71.0
Q ss_pred HHHHHHhc---cCCCCCCCCCCcccCCchhhhhhhccCc---cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEE
Q 023126 166 LNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIE 232 (287)
Q Consensus 166 ~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~al~~~a---~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vt 232 (287)
.+.|..+| ....++..+|||||-||+-+|.-|...+ -+.|+|||+..|-- .+++.|..+.+ .+|+|.
T Consensus 803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIE 882 (935)
T COG0178 803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882 (935)
T ss_pred HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34444455 2456788899999999999999987666 78899999988854 34444445544 357999
Q ss_pred eCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 233 VDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 233 Hd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
|+++++.. +++ |++++.|+|+++++
T Consensus 883 HNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred cccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999887 676 58999999999987
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-12 Score=110.25 Aligned_cols=195 Identities=23% Similarity=0.331 Sum_probs=113.7
Q ss_pred hhhhcCccce--ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccc
Q 023126 68 LCSQRREIPV--VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAME 145 (287)
Q Consensus 68 v~~~~~~~~~--i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e 145 (287)
+..+.+.+.. -...-+|||.|++|||||||++.|+..++ . .| ..+..+++|+|+.+...... .
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~---~-~g----------~~v~~~~~Ddf~~~~~~r~~-~ 71 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK---K-RG----------RPVIRASIDDFHNPRVIRYR-R 71 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH---H-cC----------CeEEEeccccccCCHHHHHH-c
Confidence 3334444432 23345999999999999999999999885 1 22 12455779988654311000 0
Q ss_pred cHHHHHHhcCC-CCCchHHHHHHHHHH-hccCCC--CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHH
Q 023126 146 DPKEAHARRGA-PWTFNPLLLLNCLKN-LRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (287)
Q Consensus 146 ~i~~~~~~~~~-~~~~~~~~~~~~l~~-l~~~~~--~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l 221 (287)
+.. ...+. ..+.+.+.+.+.+-. +..... ...+.++.-...+..-......+..++|+|+.+++- ..+
T Consensus 72 ~~~---~~~g~~~~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-----~~~ 143 (223)
T PRK06696 72 GRE---SAEGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-----PEL 143 (223)
T ss_pred CCC---ChhhcCccccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-----hhH
Confidence 000 00000 134556665544332 322111 122223322222221111223446789999998753 356
Q ss_pred HHhhcCceEEEeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhc--CCCccEEeccCC
Q 023126 222 SSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSID 286 (287)
Q Consensus 222 ~~~~~~~i~vtHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~--~~~aD~i~~~~~ 286 (287)
.+.++..|+++-+.+...+|+..|.. ..|..++....++. ...+.++ |+.+. +++||+|+++.+
T Consensus 144 ~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~~~~~~~~-r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 144 RDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEEAEKMYLA-RYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchHHHHHHHH-HHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 77888899999999999998886654 45766666555554 4556666 65443 889999999875
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-13 Score=114.66 Aligned_cols=123 Identities=8% Similarity=-0.064 Sum_probs=76.0
Q ss_pred CccceecCCe-EEEEECCCCCCHHHHHHHHH-HHhcccCCCCcc-cccCCCCCCceeEEEeCCCCCCCcccCCccccHHH
Q 023126 73 REIPVVEARH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 149 (287)
Q Consensus 73 ~~~~~i~~Ge-ivgIiG~nGsGKSTLlk~L~-G~l~~~~p~~G~-i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~ 149 (287)
...+.+.+|+ +++|.||||||||||+|+|. +.+. +..|- +..... ..++|+.|.
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~~~G~~vp~~~~---~~~~~~~~~----------------- 75 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---AQSGLPIPAAEG---SSLPVFENI----------------- 75 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---HHcCCCcccccc---ccCcCccEE-----------------
Confidence 4448899995 79999999999999999998 3332 33331 000000 001111111
Q ss_pred HHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHH-HHH
Q 023126 150 AHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWK-DVS 222 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~-~l~ 222 (287)
+ ..++ .........||+||+|+..++.+ +.+++++++||++..+|.. ++. .++
T Consensus 76 ----~---------------~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~ 135 (200)
T cd03280 76 ----F---------------ADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILE 135 (200)
T ss_pred ----E---------------EecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 0 0000 11234556899999999998766 4788999999999999983 222 233
Q ss_pred Hhhc---CceEEEeCHHHH
Q 023126 223 SMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 223 ~~~~---~~i~vtHd~~~~ 238 (287)
.+.+ ..+++||+.+..
T Consensus 136 ~l~~~~~~vi~~tH~~~l~ 154 (200)
T cd03280 136 ELLERGALVIATTHYGELK 154 (200)
T ss_pred HHHhcCCEEEEECCHHHHH
Confidence 3332 246999986543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-12 Score=111.12 Aligned_cols=65 Identities=12% Similarity=0.003 Sum_probs=49.0
Q ss_pred CCCCCCCCCcccCCchhhhhhh----ccCccEEEEcCcccCCCh----hhHHHHHHhhcC-----ceEEEeCHHHHHH
Q 023126 176 GSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ 240 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al----~~~a~~li~d~~~lllDe----~~~~~l~~~~~~-----~i~vtHd~~~~~~ 240 (287)
.+..+.+||+||+|++.++.++ +.+|+++++||++..+|+ .+++.+.+..+. .+++||++.....
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 3456779999999998876443 578999999999999998 455555555432 4799999876654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-12 Score=118.06 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=101.5
Q ss_pred Ccc-ceecCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCcccc
Q 023126 73 REI-PVVEAR-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 73 ~~~-~~i~~G-----eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
++. +.|+.| |++..+|+||.|||||+++++|.++ |+.|.- ...-.++|=||.-. +..+-||++.
T Consensus 353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e-----~p~lnVSykpqkis--pK~~~tvR~l 422 (592)
T KOG0063|consen 353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGE-----IPVLNVSYKPQKIS--PKREGTVRQL 422 (592)
T ss_pred eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCc-----ccccceeccccccC--ccccchHHHH
Confidence 555 667776 6889999999999999999999999 998741 12233777777632 2223455543
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhH----HH
Q 023126 147 PKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KD 220 (287)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~----~~ 220 (287)
+..-.+... .+..-+.+..+.+. ...++.+..||||++||++++..+-.+|.+.+.|++...+|-+.. +.
T Consensus 423 l~~kIr~ay----~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Askv 498 (592)
T KOG0063|consen 423 LHTKIRDAY----MHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKV 498 (592)
T ss_pred HHHHhHhhh----cCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHH
Confidence 332111110 11222334444443 455778899999999999999999999999999999999997322 12
Q ss_pred HHHhh----cCceEEEeCHHHHHH
Q 023126 221 VSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 221 l~~~~----~~~i~vtHd~~~~~~ 240 (287)
+.++. ....+|.||.-.+-.
T Consensus 499 ikRfilhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 499 IKRFILHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred HHHHHHhccchhhhhhhHHHHHHh
Confidence 22221 122478898766543
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7e-12 Score=133.96 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhc---cCCCCCCCCCCcccCCchhhhhhhccC---ccEEEEcCcccCCCh----hhHHHHHHhhc---Cc
Q 023126 162 PLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EK 228 (287)
Q Consensus 162 ~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~al~~~---a~~li~d~~~lllDe----~~~~~l~~~~~---~~ 228 (287)
..+..+.|..+| ....++.++|||||.||+-+|..|..+ +.++++|||+..|+. .+++.+.++.+ .+
T Consensus 1676 i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tv 1755 (1809)
T PRK00635 1676 IQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSV 1755 (1809)
T ss_pred HHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeE
Confidence 344456666666 356788999999999999999998754 679999999999998 33344444433 35
Q ss_pred eEEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 229 WFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 229 i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
|+|+||++++.. +++ |++++.|+|+++.+
T Consensus 1756 ivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1756 IYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 799999999988 665 68999999999875
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=103.84 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=45.7
Q ss_pred CCcccCCchhhhhhhc----cCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHH
Q 023126 183 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM 239 (287)
Q Consensus 183 lSgG~~qrv~ia~al~----~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~ 239 (287)
||+||+||++++++++ .+++++++|++...+|. .+.+.+.++... .|++||+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~ 162 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE 162 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh
Confidence 9999999999999885 68999999999999998 344445544333 479999998764
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-12 Score=103.35 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=78.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+.+..+.++.|+|||||||||+++.+...+- ...|........ +-+...+. ..+.+
T Consensus 16 i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~~~~~~~---------~~g~~~~~------~~~~~------ 71 (162)
T cd03227 16 VTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSATRRRSGV---------KAGCIVAA------VSAEL------ 71 (162)
T ss_pred EecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhhhccCcc---------cCCCccee------eEEEE------
Confidence 4455567999999999999999999888776 444433221100 00010000 00000
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhcc----CccEEEEcCcccCCCh----hhHHHHHHhhc-
Q 023126 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDG----GVWKDVSSMFD- 226 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~----~a~~li~d~~~lllDe----~~~~~l~~~~~- 226 (287)
++ ....||+||+||+.++.++.. +++++++||+.-.+|. .+.+.+.+...
T Consensus 72 ------------i~---------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~ 130 (162)
T cd03227 72 ------------IF---------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130 (162)
T ss_pred ------------eh---------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 00 011299999999999999875 6799999999999998 34444554433
Q ss_pred --CceEEEeCHHHHHH
Q 023126 227 --EKWFIEVDLDTAMQ 240 (287)
Q Consensus 227 --~~i~vtHd~~~~~~ 240 (287)
..+++||+.+....
T Consensus 131 ~~~vii~TH~~~~~~~ 146 (162)
T cd03227 131 GAQVIVITHLPELAEL 146 (162)
T ss_pred CCEEEEEcCCHHHHHh
Confidence 34789999998754
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=113.85 Aligned_cols=172 Identities=16% Similarity=0.095 Sum_probs=94.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~ 130 (287)
|.+.+.+.+..+...+ .+. +.|--|..+||+||||-|||||++.|+..--. .|..=. +-++.
T Consensus 265 IKiEnF~ISA~Gk~LF-----vnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnID-----------vLlCE 327 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLF-----VNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNID-----------VLLCE 327 (807)
T ss_pred ceeeeeeeecccceee-----eccceEEEecceecccCCCCCchHHHHHHHHhhhcc-CCCCCc-----------eEeee
Confidence 4455555555555444 444 77899999999999999999999999875321 122211 22333
Q ss_pred CCCCCCCc-----------------------------ccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhc---cCCC
Q 023126 131 MDGFHLYL-----------------------------SQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLR---NQGS 177 (287)
Q Consensus 131 qd~~~~~~-----------------------------~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~---~~~~ 177 (287)
|.-..-.. ...|+.|.+..... ...........+++++|.-+| ...+
T Consensus 328 QEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~ 407 (807)
T KOG0066|consen 328 QEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQE 407 (807)
T ss_pred eeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhc
Confidence 33111000 00111111111100 000111112334455555555 2345
Q ss_pred CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh--hhH--HHHHHhhcCceEEEeCHHHHHH
Q 023126 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--GVW--KDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 178 ~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe--~~~--~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
++...+|||++.||++|+||-..|-+|++|+++--||- .+| ..|.....+.++||||..++-.
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS 474 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH
Confidence 67779999999999996555555555555555544443 222 3344444456799999988755
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.7e-12 Score=107.97 Aligned_cols=125 Identities=11% Similarity=0.037 Sum_probs=71.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+.+.+|++++|.||||||||||+++|++..-. +..|....... ..++++.+.-. .+...++
T Consensus 24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~--~~~g~~~~~~~---~~i~~~dqi~~-----~~~~~d~--------- 84 (202)
T cd03243 24 INLGSGRLLLITGPNMGGKSTYLRSIGLAVLL--AQIGCFVPAES---ASIPLVDRIFT-----RIGAEDS--------- 84 (202)
T ss_pred EEEcCCeEEEEECCCCCccHHHHHHHHHHHHH--HHcCCCccccc---cccCCcCEEEE-----EecCccc---------
Confidence 67889999999999999999999999954320 33343211100 01122111100 0010010
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHH-HHHHhhc---C
Q 023126 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWK-DVSSMFD---E 227 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~-~l~~~~~---~ 227 (287)
.......++.+++| +..+.+.+.+++++++||++..+|+. +.. .+..+.+ .
T Consensus 85 --------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~ 143 (202)
T cd03243 85 --------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR 143 (202)
T ss_pred --------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Confidence 11222344555554 44445556789999999999999982 222 2233322 2
Q ss_pred ceEEEeCHHHHHH
Q 023126 228 KWFIEVDLDTAMQ 240 (287)
Q Consensus 228 ~i~vtHd~~~~~~ 240 (287)
.|++||+.+....
T Consensus 144 vi~~tH~~~~~~~ 156 (202)
T cd03243 144 TLFATHFHELADL 156 (202)
T ss_pred EEEECChHHHHHH
Confidence 4799999888765
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-11 Score=106.48 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=80.7
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE-EEeCCCCCCCcccCCccccHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT-VLPMDGFHLYLSQLDAMEDPKEA 150 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~-~v~qd~~~~~~~~ltv~e~i~~~ 150 (287)
+++ +.+..|++++|.||||+||||++++++++.-- .. +| ++|-. ...+++.+++.
T Consensus 20 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--a~--------------~G~~vpa~-----~~~l~~~d~I~-- 76 (204)
T cd03282 20 NDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--AQ--------------IGCFVPAE-----YATLPIFNRLL-- 76 (204)
T ss_pred eeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--HH--------------cCCCcchh-----hcCccChhhee--
Confidence 777 88999999999999999999999999987530 00 11 11111 01123333331
Q ss_pred HHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh-----hHHHHHH
Q 023126 151 HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVSS 223 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~-----~~~~l~~ 223 (287)
..++. ........||.|++|. ..+..++.++.++++||+.-..|.. .+..++.
T Consensus 77 -------------------~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~ 136 (204)
T cd03282 77 -------------------SRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILEC 136 (204)
T ss_pred -------------------EecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHH
Confidence 12221 2234556788899865 4556677888999999999988772 2333333
Q ss_pred hhc---CceEEEeCHHHHHH
Q 023126 224 MFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 224 ~~~---~~i~vtHd~~~~~~ 240 (287)
+.+ ..+++||+.+.+..
T Consensus 137 l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 137 LIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHhcCCEEEEECChHHHHHH
Confidence 332 35799999998864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=99.02 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=101.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 161 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~ 161 (287)
-+|||.|++|||||||++.|...+. ..| ..+..++.|+++..........+.... ..+ ....+
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~----~~~----------~~~~~i~~Dd~~~~~~~~~~~~~~~~~-~~~--~~~~d 80 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK----QEG----------IPFHIFHIDDYIVERNKRYHTGFEEWY-EYY--YLQWD 80 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH----hCC----------CcEEEEEcCcccchhhhHHhcCCCchh-hhh--hhhhh
Confidence 5899999999999999999999885 111 125678888765432100000000000 000 01124
Q ss_pred HHHHH-HHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHH
Q 023126 162 PLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 162 ~~~~~-~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
.+.+. .++..+........|.++.-.+.+..- .....++.++|+|+++++- ..+.++++..|+|+.+.+...+
T Consensus 81 ~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~-~~~~~~~~vvIvEG~~l~~-----~~~~~~~d~~v~V~~~~~~~~~ 154 (193)
T PRK07667 81 IEWLRQKFFRKLQNETKLTLPFYHDETDTCEMK-KVQIPIVGVIVIEGVFLQR-----KEWRDFFHYMVYLDCPRETRFL 154 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEeeecccccccccc-ceecCCCCEEEEEehhhhh-----hhHHhhceEEEEEECCHHHHHH
Confidence 44443 345666655445555665554443321 1123457899999998532 3567788999999999999988
Q ss_pred HHhhccccCCChHHHHHHHHHhcCcchHH-HHhh--cCCCccEEec
Q 023126 241 RVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMK--SKKNADLVIK 283 (287)
Q Consensus 241 rv~gr~v~~G~~~ev~~~~~~~~~~~~~~-~i~~--~~~~aD~i~~ 283 (287)
|++.|. |...+... ..+.+.++ |+.. ++.+||+|++
T Consensus 155 R~~~r~---~~~~~~~~----~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 155 RESEET---QKNLSKFK----NRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHhccc---HhHHHHHH----HHhHHHHHHHHhhcChHhhCcEEeC
Confidence 876422 33333222 23346666 5432 5999999984
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.5e-11 Score=105.92 Aligned_cols=57 Identities=16% Similarity=-0.013 Sum_probs=44.0
Q ss_pred CCCcccCCchhhhhhhcc----CccEEEEcCcccCCChhhH----HHHHHhhc--CceEEEeCHHHH
Q 023126 182 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTA 238 (287)
Q Consensus 182 ~lSgG~~qrv~ia~al~~----~a~~li~d~~~lllDe~~~----~~l~~~~~--~~i~vtHd~~~~ 238 (287)
.||+||+||+++|++++. +|+++++|++...+|.... +.+.++.. ..|++||+++..
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~ 236 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA 236 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH
Confidence 499999999999976543 8999999999999998433 34444332 246999999864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-11 Score=106.16 Aligned_cols=123 Identities=13% Similarity=0.131 Sum_probs=76.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +...++++++|.||||+|||||+++++-.. ++.|-+.+.+....++
T Consensus 21 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------------~la~~g~~vpa~~~~~-------- 70 (222)
T cd03285 21 NDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV----------------------LMAQIGCFVPCDSADI-------- 70 (222)
T ss_pred eeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH----------------------HHHHhCCCcCcccEEE--------
Confidence 677 888899999999999999999999988431 1222221111100000
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhh--ccCccEEEEcCc---ccCCChh--hHHHHHHh
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG--VWKDVSSM 224 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al--~~~a~~li~d~~---~lllDe~--~~~~l~~~ 224 (287)
..+.+++..++.. +.....+|.|++++..++.++ +.++.++++||+ +..+|.. .+..+..+
T Consensus 71 -----------~~~~~il~~~~l~-d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l 138 (222)
T cd03285 71 -----------PIVDCILARVGAS-DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYI 138 (222)
T ss_pred -----------eccceeEeeeccc-cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHH
Confidence 0011222233322 122567999999999998888 788999999999 7778872 12222222
Q ss_pred h----cCceEEEeCHHH
Q 023126 225 F----DEKWFIEVDLDT 237 (287)
Q Consensus 225 ~----~~~i~vtHd~~~ 237 (287)
. ...+++||+.+.
T Consensus 139 ~~~~~~~vlisTH~~el 155 (222)
T cd03285 139 ATQIKCFCLFATHFHEL 155 (222)
T ss_pred HhcCCCeEEEEechHHH
Confidence 2 134689997444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-09 Score=99.73 Aligned_cols=172 Identities=22% Similarity=0.261 Sum_probs=102.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCc--cccHHH-HHHhcCCCCC
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA--MEDPKE-AHARRGAPWT 159 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv--~e~i~~-~~~~~~~~~~ 159 (287)
++||+|+||||||||++.|.+++. +. | ..++.+++|++++...+... .++... ....+|.+..
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~---~~-g----------~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgT 167 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN---AT-G----------RRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGS 167 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc---cc-C----------CceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCch
Confidence 499999999999999999999997 43 1 12567788887654321110 011111 1223456777
Q ss_pred chHHHHHHHHHHhc----cCCCCCCCCCCc----ccCCchhhhh--hhccCccEEEEcCcccCCCh--------------
Q 023126 160 FNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDDI--LVGLQHKVVIVDGNYLFLDG-------------- 215 (287)
Q Consensus 160 ~~~~~~~~~l~~l~----~~~~~~~~~lSg----G~~qrv~ia~--al~~~a~~li~d~~~lllDe-------------- 215 (287)
.+.+.+.+.++.+. ......+|.|+. |+..|..-.. .+..+++++|+|++++..-+
T Consensus 168 hDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~ 247 (347)
T PLN02796 168 HDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLE 247 (347)
T ss_pred hHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHH
Confidence 78877888888776 334456665554 4455654322 22356899999999999843
Q ss_pred hhHHHHHHh-------hcCce-EEEeCHHHHHHHHh---hccc---cCCChHHHHHHHHHhcCcchHH
Q 023126 216 GVWKDVSSM-------FDEKW-FIEVDLDTAMQRVL---KRHI---STGKPPDVAKWRIEYNDRPNAE 269 (287)
Q Consensus 216 ~~~~~l~~~-------~~~~i-~vtHd~~~~~~rv~---gr~v---~~G~~~ev~~~~~~~~~~~~~~ 269 (287)
.+.+.|... .+..| +-.-|.+.+.++.. .+.. ..|..++.+..+.+. ..|+++
T Consensus 248 ~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~-~mP~y~ 314 (347)
T PLN02796 248 VVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSR-YMPAYK 314 (347)
T ss_pred HHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHHHH
Confidence 111222222 23333 34577888877444 1121 235677777666553 356665
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.1e-10 Score=95.51 Aligned_cols=125 Identities=10% Similarity=0.023 Sum_probs=73.8
Q ss_pred ceecCC--eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHh
Q 023126 76 PVVEAR--HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 153 (287)
Q Consensus 76 ~~i~~G--eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~ 153 (287)
+.+..+ .++.|.||||+|||||+|.+....-. +..|....... -.++|+.|....+.. ..++.+++.
T Consensus 22 ~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l--a~~G~~v~a~~---~~~~~~d~i~~~l~~-~~si~~~~S----- 90 (213)
T cd03281 22 TEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL--AHIGSFVPADS---ATIGLVDKIFTRMSS-RESVSSGQS----- 90 (213)
T ss_pred EEecCCCceEEEEECCCCCChHHHHHHHHHHHHH--HhCCCeeEcCC---cEEeeeeeeeeeeCC-ccChhhccc-----
Confidence 345554 78999999999999999999843210 45565443221 225665554221111 112111110
Q ss_pred cCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh-----hHHHHHHhhc--
Q 023126 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVSSMFD-- 226 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~-----~~~~l~~~~~-- 226 (287)
.+.. +-||++++.+++..+.++++||+.-.+|+. .+..++.+.+
T Consensus 91 ----------~f~~-------------------el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~ 141 (213)
T cd03281 91 ----------AFMI-------------------DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRG 141 (213)
T ss_pred ----------hHHH-------------------HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcC
Confidence 0111 114556666677779999999999999961 2334444432
Q ss_pred ----CceEEEeCHHHHHH
Q 023126 227 ----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 227 ----~~i~vtHd~~~~~~ 240 (287)
..+++||+.+.+..
T Consensus 142 ~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 142 PECPRVIVSTHFHELFNR 159 (213)
T ss_pred CCCcEEEEEcChHHHHHh
Confidence 24689999998866
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PLN03046 D-glycerate 3-kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-09 Score=97.40 Aligned_cols=175 Identities=19% Similarity=0.223 Sum_probs=102.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCc--cccHHH-HHHhcCCC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA--MEDPKE-AHARRGAP 157 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv--~e~i~~-~~~~~~~~ 157 (287)
--++||.|++|||||||++.|.++++ +. | ..++.+++|++++...+..- ..|... .....|.+
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~---~~-g----------~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~P 277 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFR---VT-G----------RKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNA 277 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc---cc-C----------CceEEEEECCccCChHHHHHHHhhCccchhhcccCCC
Confidence 37999999999999999999999997 43 1 23677888988754321110 001000 01223556
Q ss_pred CCchHHHHHHHHHHhc----cCCCCCCCCCCc----ccCCchhhhhh--hccCccEEEEcCcccCCCh------------
Q 023126 158 WTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDDIL--VGLQHKVVIVDGNYLFLDG------------ 215 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~----~~~~~~~~~lSg----G~~qrv~ia~a--l~~~a~~li~d~~~lllDe------------ 215 (287)
..++.....+.|+.+. .+....+|.|+. |+..|+.-..+ +..+++++|+|++++++-+
T Consensus 278 GTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~ 357 (460)
T PLN03046 278 GSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQ 357 (460)
T ss_pred ccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChh
Confidence 6777766666666662 344455665543 44557654332 3456799999999999843
Q ss_pred --hhHHHHHHh-------hcCce-EEEeCHHHHHHHHhh---ccc---cCCChHHHHHHHHHhcCcchHHH
Q 023126 216 --GVWKDVSSM-------FDEKW-FIEVDLDTAMQRVLK---RHI---STGKPPDVAKWRIEYNDRPNAEL 270 (287)
Q Consensus 216 --~~~~~l~~~-------~~~~i-~vtHd~~~~~~rv~g---r~v---~~G~~~ev~~~~~~~~~~~~~~~ 270 (287)
.+-+.|... .+..| +-.-|.+.+.+|... +.. ..|..+|.+..+.+ ...|.++.
T Consensus 358 l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~-~YmPaY~~ 427 (460)
T PLN03046 358 LEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVS-RYLPAYKA 427 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH-HhhhHHHH
Confidence 011222222 22223 335777888774441 111 22667777777665 44677763
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-10 Score=87.76 Aligned_cols=63 Identities=19% Similarity=0.076 Sum_probs=47.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC--------CCceeEEEeCCCCCCCcccCCc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~--------~~~~i~~v~qd~~~~~~~~ltv 143 (287)
+++ +.+++|++++|+||||||||||++++. +|++.+.+.+ ..+.+++.+|+ .++ .++
T Consensus 6 ~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~---~ti 71 (107)
T cd00820 6 HGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE---IRL 71 (107)
T ss_pred EeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch---hhH
Confidence 666 899999999999999999999999975 3566665543 23446777777 222 588
Q ss_pred cccHHH
Q 023126 144 MEDPKE 149 (287)
Q Consensus 144 ~e~i~~ 149 (287)
++||.+
T Consensus 72 ~~Ni~~ 77 (107)
T cd00820 72 RLNIFL 77 (107)
T ss_pred Hhhcee
Confidence 899876
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.6e-09 Score=86.17 Aligned_cols=79 Identities=27% Similarity=0.401 Sum_probs=50.6
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChH---HHHHHHHHhcCcchHH-HHhhcCCC
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPP---DVAKWRIEYNDRPNAE-LIMKSKKN 277 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~---ev~~~~~~~~~~~~~~-~i~~~~~~ 277 (287)
.+++.|.++..+. +.+.+..+..|++..+.+....|++.|...+...+ +....++. ..++.+. ++.+.+..
T Consensus 79 ~~vivd~~~~~~~----~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~ 153 (182)
T PRK08233 79 DYIIVDYPFAYLN----SEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN-YARPLYLEALHTVKPN 153 (182)
T ss_pred eEEEEeeehhhcc----HHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHH-HHHHHHHHHhhcCccC
Confidence 5677787766544 34666778889999999999887775543322222 22333333 3345454 66776778
Q ss_pred ccEEeccC
Q 023126 278 ADLVIKSI 285 (287)
Q Consensus 278 aD~i~~~~ 285 (287)
||+++++.
T Consensus 154 ~~~vId~~ 161 (182)
T PRK08233 154 ADIVLDGA 161 (182)
T ss_pred CeEEEcCC
Confidence 99998754
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=85.30 Aligned_cols=149 Identities=14% Similarity=0.072 Sum_probs=85.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 160 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~ 160 (287)
-.+++|.|++|||||||.+.|+..+. +.++++|.++.....+ + .
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~-------------------~~~~~~d~~~~~~~~~---------------~--~ 58 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTG-------------------FQLVHLDDLYPGWHGL---------------A--A 58 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC-------------------CCeecccceecccccC---------------C--h
Confidence 35889999999999999999998764 3456677653221110 0 1
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc-----CceEEEeCH
Q 023126 161 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEVDL 235 (287)
Q Consensus 161 ~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~-----~~i~vtHd~ 235 (287)
..+.+.+.+..-+.. ...+ |+.-...+... ..+.++.++|.|+...+.+ .+++..+ ..|+++-+.
T Consensus 59 ~~~~l~~~~l~~g~~--~~~~-yd~~~~~~~~~--~~l~~~~vVIvEG~~al~~-----~~r~~~d~~g~v~~I~ld~~~ 128 (172)
T PRK06547 59 ASEHVAEAVLDEGRP--GRWR-WDWANNRPGDW--VSVEPGRRLIIEGVGSLTA-----ANVALASLLGEVLTVWLDGPE 128 (172)
T ss_pred HHHHHHHHHHhCCCC--ceec-CCCCCCCCCCc--EEeCCCCeEEEEehhhccH-----HHHHHhccCCCEEEEEEECCH
Confidence 122222222221111 1111 22221111111 1223467888999877754 3455555 568999999
Q ss_pred HHHHHHHhhccccCCChHHHHHHHHHhcCcchHH-HH--hhcCCCccEEec
Q 023126 236 DTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LI--MKSKKNADLVIK 283 (287)
Q Consensus 236 ~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~-~i--~~~~~~aD~i~~ 283 (287)
++...|++.|.. . ...+| ....+.++ |+ ++++++||+++.
T Consensus 129 ~vr~~R~~~Rd~---~----~~~~~-~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 129 ALRKERALARDP---D----YAPHW-EMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHHhcCc---h----hhHHH-HHHHHHHHHHHhcCCChhccEEEec
Confidence 999999887753 2 22222 23346666 54 557999999874
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-09 Score=93.63 Aligned_cols=160 Identities=11% Similarity=0.070 Sum_probs=85.8
Q ss_pred cCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc--c--CCCCCC---------ceeEEEeCCCCCCCc
Q 023126 72 RREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF--D--SQVKPP---------DVATVLPMDGFHLYL 138 (287)
Q Consensus 72 ~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~--~--~~~~~~---------~~i~~v~qd~~~~~~ 138 (287)
.|..+.+.+|+.++|+|++|+|||||++.|++.+. ...+++. + -+.... ..+-++.+-+. .+.
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~---~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~ 82 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT---KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPE 82 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc---cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHH
Confidence 36778899999999999999999999999999886 4433211 1 111000 00111111110 000
Q ss_pred ccCC-ccccHHHHHH--hcCCCC---CchHHHHHHHHHHhccCCCCCCCCCCccc--------CCchhhhhhhccCccEE
Q 023126 139 SQLD-AMEDPKEAHA--RRGAPW---TFNPLLLLNCLKNLRNQGSVYAPSFDHGV--------GDPVEDDILVGLQHKVV 204 (287)
Q Consensus 139 ~~lt-v~e~i~~~~~--~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~lSgG~--------~qrv~ia~al~~~a~~l 204 (287)
.... .+.-...... ..|..- -....++.+..+.+...... .+|||+ +||+++|+++..++.++
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~---~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGK---ILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCC---CCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 0000 0000000000 011000 01122333333333322222 359999 99999999987788898
Q ss_pred EEcCcccCCCh------hhHHHHHHhhcCceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
++ .+.++|. .+.+.++...+..|+++|.+.....
T Consensus 160 ~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~ 199 (249)
T cd01128 160 II--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRI 199 (249)
T ss_pred Ee--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCC
Confidence 88 7777772 2233333334566899999988755
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-10 Score=95.66 Aligned_cols=62 Identities=6% Similarity=-0.074 Sum_probs=39.8
Q ss_pred CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----h-HHHHHHhhc----CceEEEeCHHHHH
Q 023126 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----V-WKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 177 ~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~-~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
.....+||+|++|...+. ..+.+++++++||++..+|+. + +..++.+.+ ..+++||+.+...
T Consensus 56 ~~~~s~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 56 AQGLSTFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred hccccHHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 345567888877644432 234578999999999999983 2 222333322 2468999997543
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.2e-10 Score=101.70 Aligned_cols=162 Identities=16% Similarity=0.132 Sum_probs=96.2
Q ss_pred cceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe----CCCCCCC-cccCC---cccc
Q 023126 75 IPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP----MDGFHLY-LSQLD---AMED 146 (287)
Q Consensus 75 ~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~----qd~~~~~-~~~lt---v~e~ 146 (287)
....++|++.|++|.||-||||-+++++|.++ |.-|..-.. .+....++|+- |+.+.-. ...+. -.+.
T Consensus 94 lp~prpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~p-p~w~~il~~frgselq~yftk~le~~lk~~~kpQy 169 (592)
T KOG0063|consen 94 LPIPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDNP-PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY 169 (592)
T ss_pred CCCCCcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCCC-cchHHHhhhhhhHHHhhhhhhhccccccCcCChHH
Confidence 34578999999999999999999999999999 987763211 11111111110 0100000 00000 0011
Q ss_pred HHHH-HHhcC----C-CCCchHHHHHHHHH--HhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh---
Q 023126 147 PKEA-HARRG----A-PWTFNPLLLLNCLK--NLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--- 215 (287)
Q Consensus 147 i~~~-~~~~~----~-~~~~~~~~~~~~l~--~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe--- 215 (287)
+... ....+ . ....+.+...++++ .++...++.+.+||||+.||.++|++.+..+++.++|++-..||-
T Consensus 170 vd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQR 249 (592)
T KOG0063|consen 170 VDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQR 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHh
Confidence 1110 00000 0 00011111222222 234556788999999999999999999999999999999999996
Q ss_pred -hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 216 -GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.....++.+.. ..|+|.||+.+.-.
T Consensus 250 LkaA~~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 250 LKAAITIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred hhHHHHHHHhhCCCCeEEEEEeechHHHh
Confidence 22234444443 35789999998765
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.8e-09 Score=92.01 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=33.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
.-++|+||||||||||+++|+|++. |++|++.++|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~ 148 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK 148 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE
Confidence 5789999999999999999999999 999999887744
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-09 Score=110.21 Aligned_cols=124 Identities=9% Similarity=0.036 Sum_probs=75.8
Q ss_pred ceecCC-eEEEEECCCCCCHHHHHHHHHHH-hcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHh
Q 023126 76 PVVEAR-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 153 (287)
Q Consensus 76 ~~i~~G-eivgIiG~nGsGKSTLlk~L~G~-l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~ 153 (287)
+.+..+ ++++|.||||+|||||+|+|+|. +. +..|. ++|...... +..++.+.
T Consensus 316 i~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~-------------~Vpa~~~~~----~~~~d~i~----- 370 (771)
T TIGR01069 316 LNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGI-------------PIPANEHSE----IPYFEEIF----- 370 (771)
T ss_pred eEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhCC-------------CccCCcccc----ccchhhee-----
Confidence 567666 89999999999999999999998 44 44441 222221100 01101000
Q ss_pred cCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----h-HHHHHHhhc--
Q 023126 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----V-WKDVSSMFD-- 226 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~-~~~l~~~~~-- 226 (287)
.... +.+.+ .....+||+||++++.+...+ .++.++++|++...+|+. + +..+..+.+
T Consensus 371 ~~i~---~~~si-----------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g 435 (771)
T TIGR01069 371 ADIG---DEQSI-----------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQN 435 (771)
T ss_pred eecC---hHhHH-----------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 0000 11111 123567899999988886554 578999999999999982 2 223333322
Q ss_pred -CceEEEeCHHHHH
Q 023126 227 -EKWFIEVDLDTAM 239 (287)
Q Consensus 227 -~~i~vtHd~~~~~ 239 (287)
.++++||+.+...
T Consensus 436 ~~viitTH~~eL~~ 449 (771)
T TIGR01069 436 AQVLITTHYKELKA 449 (771)
T ss_pred CEEEEECChHHHHH
Confidence 2468899988754
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >COG4240 Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=86.62 Aligned_cols=126 Identities=29% Similarity=0.438 Sum_probs=90.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccC-CccccHHHHHHhcC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL-DAMEDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~l-tv~e~i~~~~~~~~ 155 (287)
...+.-++||.||.|||||||.-.|..++. ...| .++++++.|++++...+. ...++..-....+|
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~---~kg~----------ert~~lSLDDlYlthadrl~La~q~npllq~RG 112 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA---AKGL----------ERTATLSLDDLYLTHADRLRLARQVNPLLQTRG 112 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHH---Hhcc----------cceEEeehhhhhcchHHHHHHHHhcCchhcccC
Confidence 344456999999999999999999999987 2222 237889999887654211 01111111234567
Q ss_pred CCCCchHHHHHHHHHHhcc-CCCCCCCCCCc----ccCCchhhhhhhccCccEEEEcCcccCCCh
Q 023126 156 APWTFNPLLLLNCLKNLRN-QGSVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~-~~~~~~~~lSg----G~~qrv~ia~al~~~a~~li~d~~~lllDe 215 (287)
.|...|.....++|+.+.. .....+|.|.. |...|..-..+...+..++|+|++++..-+
T Consensus 113 lpGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 113 LPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred CCCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 8899999988899988763 34457778876 888887766666666899999999998765
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.7e-09 Score=89.00 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=26.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+++ +...+ ++++|.||||||||||+|.+++..
T Consensus 22 n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 22 NDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 555 55555 899999999999999999998754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-09 Score=94.31 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=46.4
Q ss_pred CCCCCcccCCchhhhhhhc---------cCccEEEEcCcccCCChhhHHHHHHhhc---CceEEEeCHHHHH
Q 023126 180 APSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 180 ~~~lSgG~~qrv~ia~al~---------~~a~~li~d~~~lllDe~~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
...+|+||+|+++++++++ ..+.++++|+++..||+...+.+.+.+. .+++++|+.+.+.
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~ 252 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFD 252 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhcc
Confidence 3368999999999999874 6889999999999999965555555442 4567788776654
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=98.02 Aligned_cols=97 Identities=22% Similarity=0.321 Sum_probs=64.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
..+..|.+++++||||+||||++..|++.+. +..|. ..++++.+|.+ ..++.|++.+....++
T Consensus 251 ~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G~---------~kV~LI~~Dt~-----RigA~EQLr~~AeilG 313 (484)
T PRK06995 251 ALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHGA---------SKVALLTTDSY-----RIGGHEQLRIYGKILG 313 (484)
T ss_pred ccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcCC---------CeEEEEeCCcc-----chhHHHHHHHHHHHhC
Confidence 4467899999999999999999999999886 55553 24788998864 2678899998887777
Q ss_pred CCCCc--hHHHHHHHHHHhccCCCCCCCCCCcccCCch
Q 023126 156 APWTF--NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 156 ~~~~~--~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv 191 (287)
.+... +.......+..+.......+.+ .|+.|+.
T Consensus 314 Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDT--aGr~~~d 349 (484)
T PRK06995 314 VPVHAVKDAADLRLALSELRNKHIVLIDT--IGMSQRD 349 (484)
T ss_pred CCeeccCCchhHHHHHHhccCCCeEEeCC--CCcChhh
Confidence 65322 2222222333444443444555 4544443
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-08 Score=86.08 Aligned_cols=43 Identities=26% Similarity=0.229 Sum_probs=36.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCCcccccC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDS 118 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G-~l~~~~p~~G~i~~~ 118 (287)
+++ +.+.+|++++|.||||+||||+++++++ .+. +..|.....
T Consensus 22 n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~~v~a 66 (222)
T cd03287 22 NDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGSFVPA 66 (222)
T ss_pred EeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCCEEEc
Confidence 666 8899999999999999999999999999 555 778875443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=86.62 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=37.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~ 119 (287)
+.++.|+.++|+||||||||||+++|+|+++ |+.|.+.+.+
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied 60 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIED 60 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECC
Confidence 5688999999999999999999999999998 8888876654
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9e-09 Score=89.06 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=40.3
Q ss_pred CCCCcccCCchhhhhhh----ccCccEEEEcCcccCCCh----hhHHHHHHhh--cCceEEEeCHHHHHH
Q 023126 181 PSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al----~~~a~~li~d~~~lllDe----~~~~~l~~~~--~~~i~vtHd~~~~~~ 240 (287)
..+||||+.++++|..+ ..+..++++|+...-||+ .+.+.|.++. .+.|++||+......
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED 204 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 39999999999987664 346778899999999998 4445555555 346899999887654
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-09 Score=105.88 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=69.8
Q ss_pred HHHHhccC---CCCCCCCCCcccCCchhhhhhhccCc--cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCH
Q 023126 168 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL 235 (287)
Q Consensus 168 ~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a--~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~ 235 (287)
.|+.++.. .++++.+|||||+||+.||.+++..+ +++++|||+..||+ .+++.|+++.+ .+|+++|++
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45555532 57889999999999999999998876 89999999999999 44555555543 346999999
Q ss_pred HHHHH--HHh----------hccccCCChHHHHH
Q 023126 236 DTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 236 ~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
+++.. |++ |+++..|+++++..
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 99765 443 47888898888743
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.2e-09 Score=98.09 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=39.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-ccccCCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQVK 121 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G-~i~~~~~~ 121 (287)
+++ +.+++||+++|+||||||||||++ .|+.. |++| +|.++|..
T Consensus 23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~ldg~~ 68 (504)
T TIGR03238 23 VKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFLDATH 68 (504)
T ss_pred hCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEECCEE
Confidence 777 999999999999999999999999 67777 8888 69888854
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-08 Score=101.16 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred CCCCCCCCCcccCCchhhhhhhccCc--cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--HHh-
Q 023126 176 GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al~~~a--~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~--rv~- 243 (287)
.++++.+|||||+||+.||.+++.++ .++|+|||+..||+ .+++.+.++.+ .+|+|+||++++.. +++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 47788999999999999999998875 89999999999998 34455555543 34699999998765 333
Q ss_pred ---------hccccCCChHHHH
Q 023126 244 ---------KRHISTGKPPDVA 256 (287)
Q Consensus 244 ---------gr~v~~G~~~ev~ 256 (287)
|++++.|+++++.
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred ecccccCCCCEEeeccCHHHHh
Confidence 4678889888864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-08 Score=101.77 Aligned_cols=120 Identities=9% Similarity=0.013 Sum_probs=73.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 159 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~ 159 (287)
.+.++.|.|||++||||++|.+....-- +..| .++|-... ..+.+++++.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m--aq~G-------------~~vpa~~~----~~i~~~~~i~----------- 375 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM--AKSG-------------LPIPANEP----SEIPVFKEIF----------- 375 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH--HHhC-------------CCcccCCC----ccccccceEE-----------
Confidence 4568899999999999999999754210 1222 12222210 0112222221
Q ss_pred chHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHH-HHHHhhc---Cce
Q 023126 160 FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWK-DVSSMFD---EKW 229 (287)
Q Consensus 160 ~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~-~l~~~~~---~~i 229 (287)
..+++ ......++||+||++++.++.++ ..+.++++|++...+|+. +.. .+..+.+ .++
T Consensus 376 ----------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vI 444 (782)
T PRK00409 376 ----------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKII 444 (782)
T ss_pred ----------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 11221 11245678999999999997776 577899999999999982 222 2222222 246
Q ss_pred EEEeCHHHHHH
Q 023126 230 FIEVDLDTAMQ 240 (287)
Q Consensus 230 ~vtHd~~~~~~ 240 (287)
++||+.+....
T Consensus 445 itTH~~el~~~ 455 (782)
T PRK00409 445 ATTHYKELKAL 455 (782)
T ss_pred EECChHHHHHH
Confidence 89999887654
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.7e-07 Score=80.88 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=32.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
+.++.|+.++|+|++|||||||+++|+++++ ++.|.+
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv 175 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERII 175 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEE
Confidence 5688999999999999999999999999997 766643
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >KOG2878 consensus Predicted kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-06 Score=73.52 Aligned_cols=175 Identities=21% Similarity=0.270 Sum_probs=108.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH--------HHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--------HARR 154 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~--------~~~~ 154 (287)
++|+.||.|||||||.-.|--.+...| .| ...+++++.|+|++.. .+...+. ...+
T Consensus 33 ~igfSgPQGsGKstl~~ald~~lt~Ky--~~---------E~s~~~~SvDDFYLTh-----e~Q~eL~k~npnN~Llq~R 96 (282)
T KOG2878|consen 33 VIGFSGPQGSGKSTLVFALDYKLTKKY--IQ---------EYSSATISVDDFYLTH-----EGQAELRKKNPNNALLQYR 96 (282)
T ss_pred EEEecCCCCCCceeehhhhHHHHHHHh--cc---------ccceEEEEecceeeec-----hhHHHHHhhCCCChhhccC
Confidence 899999999999999988877665222 11 1137888888886543 3333332 2345
Q ss_pred CCCCCchHHHHHHHHHHhc----cCCCCCCCCCC----cccCCchhhhhhhc-cCccEEEEcCcccCCCh----------
Q 023126 155 GAPWTFNPLLLLNCLKNLR----NQGSVYAPSFD----HGVGDPVEDDILVG-LQHKVVIVDGNYLFLDG---------- 215 (287)
Q Consensus 155 ~~~~~~~~~~~~~~l~~l~----~~~~~~~~~lS----gG~~qrv~ia~al~-~~a~~li~d~~~lllDe---------- 215 (287)
|.+...|...+.+.|..+. +.....+|.|. +|...|..-..+.- .+..++|+|++++.+.+
T Consensus 97 GlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~d 176 (282)
T KOG2878|consen 97 GLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAVD 176 (282)
T ss_pred CCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheeccC
Confidence 6777888887777777664 22234455333 45556655544432 24688999999998876
Q ss_pred -------hhHHHHH---Hh----hcC-ceEEEeCHHHHHHHHh------hccccCCChHHHHHHHHHhcCcchHHHHhhc
Q 023126 216 -------GVWKDVS---SM----FDE-KWFIEVDLDTAMQRVL------KRHISTGKPPDVAKWRIEYNDRPNAELIMKS 274 (287)
Q Consensus 216 -------~~~~~l~---~~----~~~-~i~vtHd~~~~~~rv~------gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~ 274 (287)
.+-+.+. ++ .+. +++-+.|++-+.++.+ ...+..|..+|....+- .+.-|.+++.+|+
T Consensus 177 ~l~Gdl~~VN~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~FV-~rYmP~Yk~YL~t 255 (282)
T KOG2878|consen 177 PLQGDLEVVNKKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVNDFV-SRYMPAYKAYLPT 255 (282)
T ss_pred cccccHHHHhhHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHHHH-HhhhhHHHhhhhh
Confidence 0111111 11 122 2466788888888444 23456788888766654 3556778755553
|
|
| >KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-07 Score=87.74 Aligned_cols=192 Identities=26% Similarity=0.390 Sum_probs=128.7
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH---Hhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARR 154 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~---~~~ 154 (287)
...--++|+.|.++|||||.+..+..-+... +.+| ....+..+.++.++-. +|. +++.... ..+
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~-~~~~--------~~~~v~~ls~~~fY~~---lt~-~~~~~a~~~~~~f 107 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAI-ERDG--------RQPQVVLLSQDSFYKV---LTS-EELAKAQEGKYNF 107 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhh-hhcc--------CCCeEEEeecHHHHHh---hch-HHHHHhhhccccc
Confidence 3444588999999999999776666555421 2233 1223566666644321 232 3333222 234
Q ss_pred CCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeC
Q 023126 155 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD 234 (287)
Q Consensus 155 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd 234 (287)
..+.+.+.+.+...++.+..+....++-|+.=--+|..--..++.++.++++++-+.+.| .+++++.+..+|++-|
T Consensus 108 ~~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd----~~~~~l~~~k~fvd~~ 183 (473)
T KOG4203|consen 108 DHPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYD----ERVRDLFTMKLFVDTD 183 (473)
T ss_pred cCCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhH----HHHHHHhcceEEEecC
Confidence 456677777777777666666666666665544444332223455688899999999888 5778888889999999
Q ss_pred HHHHHHHHh-hccccCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 235 LDTAMQRVL-KRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 235 ~~~~~~rv~-gr~v~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
.+....+++ |.+.+.|...+-+...+..+.+|.+. |++|.+++||+++|...
T Consensus 184 ~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~ 237 (473)
T KOG4203|consen 184 ADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGG 237 (473)
T ss_pred cchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccc
Confidence 999988555 66667887766555555557788887 99999999999998754
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-07 Score=88.66 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=54.9
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc---cccCCC--------------CCCceeEEEeCCCCC
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQV--------------KPPDVATVLPMDGFH 135 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~---i~~~~~--------------~~~~~i~~v~qd~~~ 135 (287)
++++.+.+|++++|+|+||+|||||+++|+|+.+ ++.+. +-..+. ..+..+++.+++...
T Consensus 147 D~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~---~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~ 223 (434)
T PRK07196 147 NGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ---ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESP 223 (434)
T ss_pred cceEeEecceEEEEECCCCCCccHHHHHHhcccC---CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCCh
Confidence 7779999999999999999999999999999987 77532 211111 112357888888543
Q ss_pred CCcccCCccccHHHHHHhc
Q 023126 136 LYLSQLDAMEDPKEAHARR 154 (287)
Q Consensus 136 ~~~~~ltv~e~i~~~~~~~ 154 (287)
.. .+++.++.......+
T Consensus 224 ~~--rl~a~e~a~~iAEyf 240 (434)
T PRK07196 224 LM--RIKATELCHAIATYY 240 (434)
T ss_pred hh--hHHHHHHHHHHHHHh
Confidence 33 367777776655544
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-07 Score=85.46 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=61.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
+.+|++++|+||||+|||||++.|++.+. -..| ...++++..|.+. ....+.+.......+.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~~---------~~~v~~i~~d~~r-----igalEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRHG---------ADKVALLTTDSYR-----IGGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC---------CCeEEEEecCCcc-----hhHHHHHHHHHHHcCCc
Confidence 57899999999999999999999999652 1111 1236777777542 35566777666666665
Q ss_pred CC--chHHHHHHHHHHhccCCCCCCCCCCcccCCchh
Q 023126 158 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 158 ~~--~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ 192 (287)
.. .+...+...+..+.......+.+ .|+.||..
T Consensus 251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd~ 285 (420)
T PRK14721 251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRDQ 285 (420)
T ss_pred eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcchH
Confidence 32 23334445555554443334444 58888754
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-07 Score=88.25 Aligned_cols=76 Identities=17% Similarity=0.099 Sum_probs=58.3
Q ss_pred ccccCccccccccc-chhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC---CC-----
Q 023126 51 VFGKTRSLVQNKTS-LKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---VK----- 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~---~~----- 121 (287)
.++.++++..|... .++ |.+..+.+|++++|+|+||||||||+++|+++.+ |+.|.+.+.| .+
T Consensus 139 ~~~r~~v~~~l~TGi~aI-----D~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~ 210 (450)
T PRK06002 139 AMTRARVETGLRTGVRVI-----DIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFL 210 (450)
T ss_pred CeEeecceEEcCCCcEEe-----eeeceecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHh
Confidence 55666777777543 333 6667899999999999999999999999999998 9998876543 21
Q ss_pred -------CCceeEEEeCCCC
Q 023126 122 -------PPDVATVLPMDGF 134 (287)
Q Consensus 122 -------~~~~i~~v~qd~~ 134 (287)
..+.+++++|.+.
T Consensus 211 ~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 211 EDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHHhhCCeEEEEEcCCC
Confidence 1245889998864
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.5e-07 Score=77.64 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=30.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+++ +..++|++++|.||||+||||+++.+++..
T Consensus 21 ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 21 NDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred eeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 777 888899999999999999999999999874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=76.64 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=26.9
Q ss_pred eecCCeEEEEECCCCCCHHHH-HHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTL-AAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTL-lk~L~G~l~ 106 (287)
.+.+|+++.|.|+|||||||| ++.+.+.++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 378999999999999999999 588888775
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.8e-08 Score=82.89 Aligned_cols=46 Identities=7% Similarity=-0.091 Sum_probs=35.3
Q ss_pred CCCCCcc--cCCchhhhhhhccCccEEEEcCcc-----cCCChhhHHHHHHhh
Q 023126 180 APSFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMF 225 (287)
Q Consensus 180 ~~~lSgG--~~qrv~ia~al~~~a~~li~d~~~-----lllDe~~~~~l~~~~ 225 (287)
....+|+ +++++.+|++++.+++++++|+++ ..||+...+.+.+.+
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~ 200 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL 200 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH
Confidence 3445555 777799999999999999999999 999985554444443
|
|
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-06 Score=68.29 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=41.0
Q ss_pred hcCceEEEeCHHHHHHHHhhcccc--CCChHHHHHHHHHhcCcchHH-HHhhcC-CCccEEecc
Q 023126 225 FDEKWFIEVDLDTAMQRVLKRHIS--TGKPPDVAKWRIEYNDRPNAE-LIMKSK-KNADLVIKS 284 (287)
Q Consensus 225 ~~~~i~vtHd~~~~~~rv~gr~v~--~G~~~ev~~~~~~~~~~~~~~-~i~~~~-~~aD~i~~~ 284 (287)
.+..|++..+++....|+..|... .|.+.+-+.+.+.....+... |+.+++ ...|+++++
T Consensus 83 ~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 83 ADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDT 146 (147)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeC
Confidence 345689999999988888765443 255556556666666566544 777775 556899986
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-07 Score=86.73 Aligned_cols=99 Identities=12% Similarity=0.049 Sum_probs=64.9
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC---CCC-----------CceeEEE-----eCCC
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---VKP-----------PDVATVL-----PMDG 133 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~---~~~-----------~~~i~~v-----~qd~ 133 (287)
|.++.+.+|++++|+|+||+|||||+++|+++.+. .+.|.+.+.| ... ....+++ +|++
T Consensus 156 D~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p 233 (442)
T PRK06315 156 DGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSS 233 (442)
T ss_pred eccccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCH
Confidence 67799999999999999999999999999998851 3444444322 110 1123444 7776
Q ss_pred CCCCcccCCccccHHHHHHhcCCC---CCchHHHHHHHHHHhcc
Q 023126 134 FHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 134 ~~~~~~~ltv~e~i~~~~~~~~~~---~~~~~~~~~~~l~~l~~ 174 (287)
....++.+ +...+++..+.++.. ...+..++.++++.++.
T Consensus 234 ~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 234 QLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred HHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 65544444 445555555554432 13456778888888874
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.9e-07 Score=76.87 Aligned_cols=129 Identities=14% Similarity=0.092 Sum_probs=71.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
.++|.|+||||||||++.|++.+. + .|. . ..+++.++... ......+..... ... .
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~---~-~G~-~--------~~g~~~~~~~~--~~~~~~~~~~~~------~~~--~- 57 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK---E-EGY-K--------VGGFYTEEVRE--GGKRIGFKIIDL------DTG--E- 57 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---H-CCC-e--------EEEEEcHHHHh--cCCccceEEEEc------CCC--C-
Confidence 578999999999999999999876 4 341 1 13455443111 101111110000 000 0
Q ss_pred HHHHHHHHHhc----cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcC--cccCCChhhHHHHHHhhcC---ceEEEe
Q 023126 163 LLLLNCLKNLR----NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE---KWFIEV 233 (287)
Q Consensus 163 ~~~~~~l~~l~----~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~--~~lllDe~~~~~l~~~~~~---~i~vtH 233 (287)
...+...+ .....+...+|++++-+..+.......++++++|+ +.-.+|+...+.+....+. .++++|
T Consensus 58 ---~~~l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h 134 (174)
T PRK13695 58 ---EGILARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLH 134 (174)
T ss_pred ---eEEccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEEC
Confidence 00111111 01122344688888888877666667889999998 4445555556666666543 468899
Q ss_pred CHHHH
Q 023126 234 DLDTA 238 (287)
Q Consensus 234 d~~~~ 238 (287)
+....
T Consensus 135 ~~~~~ 139 (174)
T PRK13695 135 RRSVH 139 (174)
T ss_pred chhhH
Confidence 86543
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-06 Score=60.31 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=27.1
Q ss_pred ceecC-CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEA-RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~-GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+.+ |.++.|.|+|||||||++.+|.-.+-
T Consensus 17 ~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 17 IDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 56665 57999999999999999999998876
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.1e-07 Score=74.21 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=25.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|++++|+|+||||||||+++|++++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999999999987
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.5e-07 Score=84.68 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=67.5
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHH
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~ 152 (287)
|..+.+.+|++++|+|+||+|||||+++|++..+ |+.|.+ .++.+.. ..+.+++.....
T Consensus 148 D~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI-----------~~iGerg-------~ev~e~~~~~l~ 206 (432)
T PRK06793 148 DSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVI-----------SLVGERG-------REVKDFIRKELG 206 (432)
T ss_pred eccceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEE-----------EeCCCCc-------ccHHHHHHHHhh
Confidence 6679999999999999999999999999999988 776632 2333332 233333221111
Q ss_pred hcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhc-------cCccEEEEcCcccCCCh
Q 023126 153 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~-------~~a~~li~d~~~lllDe 215 (287)
..+..+. -.-....+.|.|++.|++.+.+.+ .+.-++++|..+-.+|.
T Consensus 207 ~~gl~~t---------------vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A 261 (432)
T PRK06793 207 EEGMRKS---------------VVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA 261 (432)
T ss_pred hccccee---------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH
Confidence 1111100 001334577888998888855544 44566677777766664
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=66.39 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+|++||||||+.+.|+..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999886
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.2e-05 Score=64.26 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+|++|||||||++.|+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999876
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.4e-06 Score=74.39 Aligned_cols=28 Identities=39% Similarity=0.601 Sum_probs=26.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++|++++|+||||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
|
|
| >KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.4e-06 Score=68.71 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=81.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
+|||.|-+-||||||++.+..++++ ..+++||+|+.+.++..+..| ....+....+-+.
T Consensus 6 ivgiSG~TnsGKTTLak~l~~~f~~------------------~~lIhqDDFyKp~~Ei~v~~~---n~~~wd~~esLdm 64 (225)
T KOG3308|consen 6 IVGISGCTNSGKTTLAKSLHRFFPG------------------CSLIHQDDFYKPENEIEVDYN---NIDNWDLLESLDM 64 (225)
T ss_pred EEEeecccCCCHhHHHHHHHHHccC------------------CeeeccccccCchhhhhcccC---CcchhcchhhhhH
Confidence 7899999999999999999998862 458999999888766655554 2234444445555
Q ss_pred HHHHHHHH-HhccCCCCCCC---CCCcc----cCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeC
Q 023126 163 LLLLNCLK-NLRNQGSVYAP---SFDHG----VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD 234 (287)
Q Consensus 163 ~~~~~~l~-~l~~~~~~~~~---~lSgG----~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd 234 (287)
+.+.+.+. .+....+.+.. -.|-- ..|.-.+ -+.+..+++.|+-.+.-- +.+.+.++..|+++-+
T Consensus 65 ~~fl~~ia~~l~~~~~~~~ar~~~v~~~~~~~~~~~~q~---~~~~~~iviidGfmiy~y----~p~~~~~d~~im~~~~ 137 (225)
T KOG3308|consen 65 EKFLEKIATWLDSRHNAPEAREHLVSYANFEHYAQQFQI---KAYKNHIVIIDGFMIYNY----KPQVDLFDRIIMLTLD 137 (225)
T ss_pred HHHHHHHHHHhcCccccchHhhhhhhhhHHHHHhhhcCc---ccccCcEEEEecceEEec----chhhhhhhhheeeecc
Confidence 55544332 22211111100 11110 0000011 122367788888766543 4566688888999999
Q ss_pred HHHHHHHHh
Q 023126 235 LDTAMQRVL 243 (287)
Q Consensus 235 ~~~~~~rv~ 243 (287)
-+.+.+|.-
T Consensus 138 y~~~krRr~ 146 (225)
T KOG3308|consen 138 YETCKRRRE 146 (225)
T ss_pred HHHHHHhhc
Confidence 999888554
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-06 Score=74.08 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=24.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|++++|+||||||||||+++|++.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999875
|
|
| >PRK05057 aroK shikimate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.3e-05 Score=64.47 Aligned_cols=26 Identities=38% Similarity=0.689 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
...+.|+|++||||||+++.|++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45689999999999999999999875
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.9e-06 Score=68.09 Aligned_cols=141 Identities=13% Similarity=0.016 Sum_probs=72.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC----
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---- 157 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~---- 157 (287)
-|+.|+|.||+|||||+..|+-... ..+..|.-.+.+.. . .++. ...+++...... ..+
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~-~n~aGg~~n~~~~~------~-~s~s--------~l~~~~k~~~~~-k~~~g~F 100 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMG-FNAAGGGKNFKGEL------D-ASHS--------ALVDYAKLHKRK-KPPIGFF 100 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhcc-ccccCCCcCcCccc------c-cccc--------hHHHhHHHhhcC-CCCcceE
Confidence 3778999999999999999987664 11333322111100 0 0000 000111111000 000
Q ss_pred -CCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--
Q 023126 158 -WTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-- 227 (287)
Q Consensus 158 -~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~-- 227 (287)
.++..-.+...++.+.. .........|.|+-=..-+.... ...-+.++|+|=..|.+ +++..++++.+.
T Consensus 101 lRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGa 179 (233)
T COG3910 101 LRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGA 179 (233)
T ss_pred EehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCC
Confidence 11111122233443331 22345668899984332222222 23567777877777776 566777777664
Q ss_pred -ceEEEeCHHHHHH
Q 023126 228 -KWFIEVDLDTAMQ 240 (287)
Q Consensus 228 -~i~vtHd~~~~~~ 240 (287)
.|++||.+-....
T Consensus 180 Q~IiATHSPiLlAi 193 (233)
T COG3910 180 QIIIATHSPILLAI 193 (233)
T ss_pred eEEEEecChhheeC
Confidence 4799999876543
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.8e-06 Score=79.07 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=45.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC-----CCceeEEEeCCCCCC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGFHL 136 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~-----~~~~i~~v~qd~~~~ 136 (287)
.+.+|++++|+|+||+|||||++.|.|... +..|++..++.. ....+.+++++.+.+
T Consensus 191 ~L~~g~~~~lvG~sgvGKStLin~L~g~~~---~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~ 252 (356)
T PRK01889 191 WLSGGKTVALLGSSGVGKSTLVNALLGEEV---QKTGAVREDDSKGRHTTTHRELHPLPSGGLLI 252 (356)
T ss_pred HhhcCCEEEEECCCCccHHHHHHHHHHhcc---cceeeEEECCCCCcchhhhccEEEecCCCeec
Confidence 367899999999999999999999999999 999998765432 123467777775544
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.8e-06 Score=81.17 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=50.1
Q ss_pred CcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 55 TRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 55 ~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
.++...+|...+. +.+ +.+..|+.++|+|+||||||||++.|.|+++ |.+|++.+....
T Consensus 188 ~d~~~v~Gq~~~~-----~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~e~le~~~ 247 (506)
T PRK09862 188 HDLSDVIGQEQGK-----RGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNEEALESAA 247 (506)
T ss_pred cCeEEEECcHHHH-----hhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCcEEEecch
Confidence 4677777776666 777 8899999999999999999999999999999 999987665543
|
|
| >PRK14732 coaE dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.8e-06 Score=69.44 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=46.7
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.+++.|-++++= ......++.+++|+.+.+...+|+..| +|-..+.+..++.. .. .+.+...+||+|
T Consensus 104 ~~vi~e~pLL~E-----~~~~~~~D~vi~V~a~~e~r~~RL~~R---~g~s~e~a~~ri~~-Q~----~~~~k~~~aD~v 170 (196)
T PRK14732 104 KLVIWEVPLLFE-----TDAYTLCDATVTVDSDPEESILRTISR---DGMKKEDVLARIAS-QL----PITEKLKRADYI 170 (196)
T ss_pred CcEEEEeeeeeE-----cCchhhCCEEEEEECCHHHHHHHHHHc---CCCCHHHHHHHHHH-cC----CHHHHHHhCCEE
Confidence 455666665532 123356788899999999998888866 35555655555443 22 244567889999
Q ss_pred eccCC
Q 023126 282 IKSID 286 (287)
Q Consensus 282 ~~~~~ 286 (287)
+.|..
T Consensus 171 I~N~~ 175 (196)
T PRK14732 171 VRNDG 175 (196)
T ss_pred EECCC
Confidence 98753
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=65.94 Aligned_cols=123 Identities=13% Similarity=0.084 Sum_probs=67.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHH
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL 163 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~ 163 (287)
+.|.||+|+|||||+..++-..- ..| ..+.|+..+ .+..+.+.. ...++.+ .+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~----~~g----------~~v~~~s~e--------~~~~~~~~~-~~~~g~~----~~ 54 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL----ARG----------EPGLYVTLE--------ESPEELIEN-AESLGWD----LE 54 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH----HCC----------CcEEEEECC--------CCHHHHHHH-HHHcCCC----hH
Confidence 67899999999999876544321 111 225566543 122222222 2222321 11
Q ss_pred HHHHHHHHhc--cCCCCCCCCCCcccCC------chhhhhhhccCccEEEEcCcccCCC---h----hhHHHHHHhhc--
Q 023126 164 LLLNCLKNLR--NQGSVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---G----GVWKDVSSMFD-- 226 (287)
Q Consensus 164 ~~~~~l~~l~--~~~~~~~~~lSgG~~q------rv~ia~al~~~a~~li~d~~~lllD---e----~~~~~l~~~~~-- 226 (287)
. +...+ ...+..+..+|+|++| ......+...+++++++|++..++| + .+.+.+..+..
T Consensus 55 ~----l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g 130 (187)
T cd01124 55 R----LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFG 130 (187)
T ss_pred H----HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCC
Confidence 1 11222 2234556688999988 4444444566899999999999988 3 22233333322
Q ss_pred -CceEEEeCHHH
Q 023126 227 -EKWFIEVDLDT 237 (287)
Q Consensus 227 -~~i~vtHd~~~ 237 (287)
..++++|+...
T Consensus 131 ~tvi~v~~~~~~ 142 (187)
T cd01124 131 VTTLLTSEQSGL 142 (187)
T ss_pred CEEEEEeccccC
Confidence 23577887664
|
A related protein is found in archaea. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.8e-05 Score=64.85 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=36.8
Q ss_pred HHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEEeccC
Q 023126 221 VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 221 l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~ 285 (287)
+...++..++++.+.+....|+..|. |.+.+.+.+++.... + ....+..||++++|.
T Consensus 120 ~~~~~D~vv~V~~~~~~~~~Rl~~R~---~~s~~~~~~r~~~q~-~----~~~~~~~ad~vI~N~ 176 (188)
T TIGR00152 120 LRSLCDRVIVVDVSPQLQLERLMQRD---NLTEEEVQKRLASQM-D----IEERLARADDVIDNS 176 (188)
T ss_pred cHHhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhcC-C----HHHHHHhCCEEEECC
Confidence 45566677888888888888777554 555565555554321 1 123467799999764
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.7e-06 Score=81.80 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=54.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+.+.+|++++++||||+||||++..|++.+. ...| .+.++++..|.+- ....+.+.......+
T Consensus 180 ~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G---------~kkV~lit~Dt~R-----igA~eQL~~~a~~~g 242 (767)
T PRK14723 180 ALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG---------ADQLALLTTDSFR-----IGALEQLRIYGRILG 242 (767)
T ss_pred cccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC---------CCeEEEecCcccc-----hHHHHHHHHHHHhCC
Confidence 4466799999999999999999999999885 4433 1347788877541 334566666666665
Q ss_pred CCC--CchHHHHHHHHHHhc
Q 023126 156 APW--TFNPLLLLNCLKNLR 173 (287)
Q Consensus 156 ~~~--~~~~~~~~~~l~~l~ 173 (287)
.+. ..+.+.+.+.++.+.
T Consensus 243 vpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 243 VPVHAVKDAADLRFALAALG 262 (767)
T ss_pred CCccccCCHHHHHHHHHHhc
Confidence 542 234445566666554
|
|
| >PRK14730 coaE dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=68.98 Aligned_cols=71 Identities=25% Similarity=0.456 Sum_probs=46.5
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.++++|-++++= ..+...++.+++|+.+.+...+|++.|. |-..+.+.++... ..+ +.+....||+|
T Consensus 108 ~~vv~e~pll~E-----~~~~~~~D~ii~V~a~~e~r~~Rl~~R~---g~s~e~~~~ri~~-Q~~----~~~k~~~aD~v 174 (195)
T PRK14730 108 PIVVLVIPLLFE-----AKLTDLCSEIWVVDCSPEQQLQRLIKRD---GLTEEEAEARINA-QWP----LEEKVKLADVV 174 (195)
T ss_pred CEEEEEeHHhcC-----cchHhCCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHh-CCC----HHHHHhhCCEE
Confidence 466677676642 1355577888999999999998888553 4444544444432 112 34457789999
Q ss_pred eccC
Q 023126 282 IKSI 285 (287)
Q Consensus 282 ~~~~ 285 (287)
++|.
T Consensus 175 I~N~ 178 (195)
T PRK14730 175 LDNS 178 (195)
T ss_pred EECC
Confidence 9875
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-06 Score=81.03 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=39.5
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 118 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~ 118 (287)
|+++.+.+|++++|+|+||+|||||+++|+++.. |+.|.+...
T Consensus 150 d~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~ 192 (438)
T PRK07721 150 DSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALI 192 (438)
T ss_pred heeeeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEE
Confidence 7779999999999999999999999999999998 999887653
|
|
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-06 Score=82.73 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=37.5
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 116 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~ 116 (287)
|..+.+.+|+.++|+|+||+|||||+++|++..+ ++.|.+.
T Consensus 149 D~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~ 189 (434)
T PRK05922 149 DAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIA 189 (434)
T ss_pred cceEEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEEE
Confidence 6678999999999999999999999999999988 8888763
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.7e-06 Score=77.03 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=31.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
.+|++++++|||||||||++..|++.+. +..++|.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~L 147 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLL 147 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEE
Confidence 4689999999999999999999999998 77666554
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.4e-05 Score=65.20 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|+|++|||||||++.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998765
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.5e-06 Score=80.80 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=47.0
Q ss_pred ccccCccccccc-ccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC
Q 023126 51 VFGKTRSLVQNK-TSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119 (287)
Q Consensus 51 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~ 119 (287)
.++.+.++..+. +..++ |.++.+.+|++++|+|+||+|||||+++|++... ++.|.+...|
T Consensus 129 ~~~r~~v~~~l~tGi~aI-----D~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iG 190 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAI-----DSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIG 190 (433)
T ss_pred ceeccCHhheeCCCceee-----eeeeecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEEC
Confidence 344445555553 33444 7779999999999999999999999999999998 9888665444
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.2e-06 Score=77.36 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=37.9
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
|.++.+.+|++++|+|+||+|||||+++|+|... |+.|.+..
T Consensus 61 D~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~ 102 (326)
T cd01136 61 DGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIAL 102 (326)
T ss_pred eeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEE
Confidence 7779999999999999999999999999999998 88776543
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.8e-06 Score=69.09 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=24.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999875
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK14731 coaE dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.3e-05 Score=66.49 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=45.0
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.+++.|.++++ . ......++.+++++.+.+...+|+..|. +...+.+.++... ..+..+.+ ..||++
T Consensus 116 ~vvv~e~pLL~-e----~~~~~~~d~ii~V~a~~e~~~~Rl~~R~---~~s~e~~~~Ri~~-q~~~~~~~----~~ad~v 182 (208)
T PRK14731 116 RILVKEAAILF-E----SGGDAGLDFIVVVAADTELRLERAVQRG---MGSREEIRRRIAA-QWPQEKLI----ERADYV 182 (208)
T ss_pred CEEEEEeeeee-e----cCchhcCCeEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHH-cCChHHHH----HhCCEE
Confidence 56777777443 2 1233456778899999999988888652 3355656665543 23333343 368999
Q ss_pred eccC
Q 023126 282 IKSI 285 (287)
Q Consensus 282 ~~~~ 285 (287)
++|.
T Consensus 183 I~N~ 186 (208)
T PRK14731 183 IYNN 186 (208)
T ss_pred EECC
Confidence 8775
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.7e-06 Score=69.64 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=24.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999765
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.8e-06 Score=71.01 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=26.8
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-.+|.+++|+|+||||||||++.|.+.+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999885
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.8e-06 Score=81.34 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=63.5
Q ss_pred CCCCCCCCCCcccCCchhhhhhhccC--ccEEEEcCcccCCCh----hh---HHHHHHhhcCceEEEeCHHHHHH--HHh
Q 023126 175 QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDG----GV---WKDVSSMFDEKWFIEVDLDTAMQ--RVL 243 (287)
Q Consensus 175 ~~~~~~~~lSgG~~qrv~ia~al~~~--a~~li~d~~~lllDe----~~---~~~l~~~~~~~i~vtHd~~~~~~--rv~ 243 (287)
..++...+|||||.||+-+|..+-+. -=+.++|||-+.|-+ .+ ++.|+++-.+.|+|.||.+..+. +++
T Consensus 474 tL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iI 553 (935)
T COG0178 474 TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHII 553 (935)
T ss_pred cccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEE
Confidence 45788899999999999998776332 234578888888866 34 44444444556899999999888 665
Q ss_pred ----------hccccCCChHHHHHH
Q 023126 244 ----------KRHISTGKPPDVAKW 258 (287)
Q Consensus 244 ----------gr~v~~G~~~ev~~~ 258 (287)
|.+++.|++++++++
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhC
Confidence 689999999998763
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.6e-06 Score=78.31 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=38.6
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---cccccCCC
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQV 120 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~---G~i~~~~~ 120 (287)
++++.+.+|++++|+|+||+|||||+++|++... ++. |.|-..+.
T Consensus 143 d~ll~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ 190 (428)
T PRK08149 143 DGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGR 190 (428)
T ss_pred eeeeeEecCCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCc
Confidence 7779999999999999999999999999999887 776 65555443
|
|
| >cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2 | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.9e-05 Score=66.28 Aligned_cols=71 Identities=27% Similarity=0.421 Sum_probs=46.3
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.+++.|.++++-. .+...++.+++|+.+.+...+|++.|. |...+.+...+..- .+. .+....||+|
T Consensus 104 ~~vive~plL~e~-----~~~~~~D~vv~V~a~~~~ri~Rl~~Rd---~~s~~~~~~r~~~Q-~~~----~~~~~~aD~v 170 (179)
T cd02022 104 KVVVLDIPLLFET-----GLEKLVDRVIVVDAPPEIQIERLMKRD---GLSEEEAEARIASQ-MPL----EEKRARADFV 170 (179)
T ss_pred CEEEEEehHhhcC-----CcHHhCCeEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhc-CCH----HHHHHhCCEE
Confidence 4677776666432 345677888999999999988887553 44445444444331 222 2356789999
Q ss_pred eccC
Q 023126 282 IKSI 285 (287)
Q Consensus 282 ~~~~ 285 (287)
++|.
T Consensus 171 I~N~ 174 (179)
T cd02022 171 IDNS 174 (179)
T ss_pred EECc
Confidence 9875
|
7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis. |
| >PRK00081 coaE dephospho-CoA kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.9e-05 Score=66.09 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=45.3
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.++++|.++++-. .+.+.++.+++++.+.+...+|+..| +|-..+.+..++.. ..+. ......||++
T Consensus 107 ~~vv~e~pll~e~-----~~~~~~D~vi~V~a~~e~~~~Rl~~R---~~~s~e~~~~ri~~-Q~~~----~~~~~~ad~v 173 (194)
T PRK00081 107 PYVVLDIPLLFEN-----GLEKLVDRVLVVDAPPETQLERLMAR---DGLSEEEAEAIIAS-QMPR----EEKLARADDV 173 (194)
T ss_pred CEEEEEehHhhcC-----CchhhCCeEEEEECCHHHHHHHHHHc---CCCCHHHHHHHHHH-hCCH----HHHHHhCCEE
Confidence 5677787776532 34456788899999999988888755 34454544444432 1222 2235678999
Q ss_pred eccC
Q 023126 282 IKSI 285 (287)
Q Consensus 282 ~~~~ 285 (287)
++|.
T Consensus 174 I~N~ 177 (194)
T PRK00081 174 IDNN 177 (194)
T ss_pred EECC
Confidence 9774
|
|
| >PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.9e-06 Score=78.70 Aligned_cols=52 Identities=21% Similarity=0.443 Sum_probs=38.2
Q ss_pred ccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 57 SLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 57 ~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
+.+.+|+...+ |++ +.. +|.+++|.|||||||||+++.|+..+...+.++|.
T Consensus 265 ~A~~~g~~RLI-----DN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~ 317 (512)
T PRK13477 265 IAVRCGSTRLI-----DNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGA 317 (512)
T ss_pred EEEEeCCeEEE-----eeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCc
Confidence 34455555555 888 555 88999999999999999999999877522234443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 287 | ||||
| 3c8u_A | 208 | Crystal Structure Of Putative Fructose Transport Sy | 4e-18 | ||
| 2ga8_A | 359 | Crystal Structure Of Yfh7 From Saccharomyces Cerevi | 9e-15 |
| >pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At 1.95 A Resolution Length = 208 | Back alignment and structure |
|
| >pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase With A Circular Permutation. Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 9e-71
Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 18/202 (8%)
Query: 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 140
R +V L+G PG+GKSTL+ + ++ A V+PMDGFHL
Sbjct: 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLP--------------AEVVPMDGFHLDNRL 67
Query: 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 200
L+ P+ R+GAP TF+ L++Q V P FD + VG +
Sbjct: 68 LE----PRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPE 123
Query: 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 260
+V I++GNYL D W+D+++++D +EV + R+++R + G D A R
Sbjct: 124 CRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAVARA 183
Query: 261 EYNDRPNAELIMKSKKNADLVI 282
+ ND NA I ++ ADL
Sbjct: 184 QGNDLANARAIEAARLPADLTW 205
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 | Back alignment and structure |
|---|
Score = 209 bits (532), Expect = 5e-66
Identities = 55/252 (21%), Positives = 92/252 (36%), Gaps = 44/252 (17%)
Query: 71 QRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130
+ + G + A V +N + S ++A ++P
Sbjct: 109 VKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDS--------INIAQIVP 160
Query: 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------------- 175
MDGFHL LD +DP+ AH RRG+P TF+ L K L
Sbjct: 161 MDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTS 220
Query: 176 --------------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221
++ P F+H + DP D + ++VI++G YL D WK +
Sbjct: 221 SVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKI 280
Query: 222 SSMFDEK-----WFIEVDLDTAMQRVLKRHISTGKPPDV--AKWRIEYNDRPNAELIMKS 274
+ + I++D + +RV KRH+ +G + + + ND N I
Sbjct: 281 YKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNGRDIDNH 340
Query: 275 KKNADLVIKSID 286
D ++ +
Sbjct: 341 LIKVDNIVHIRN 352
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--PDVATVLPMDGFH-LY 137
R V L G PG+GKST+A E+ + IN+ + S + ++ V +D L
Sbjct: 24 RVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQ 83
Query: 138 LSQLDAMED 146
+++ M +
Sbjct: 84 PNKVAEMIE 92
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-38
Identities = 37/253 (14%), Positives = 86/253 (33%), Gaps = 44/253 (17%)
Query: 59 VQNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 118
+ + + + Q +I+ +AG GKST A + +++ +
Sbjct: 58 ISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR----- 112
Query: 119 QVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGS 177
++ DGF L + ++G P +++ L+ + +L++ +
Sbjct: 113 -------VELITTDGFLHPNQVLKE----RGLMKKKGFPESYDMHRLVKFVSDLKSGVPN 161
Query: 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKWFI 231
V AP + H + D + D +Q ++I++G + VS D ++
Sbjct: 162 VTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYV 221
Query: 232 EVDLDTAMQRVLKRHISTGKPP--DVAKWRIEYND------------------RPNAEL- 270
+ D + R + + D + Y N +
Sbjct: 222 DAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQN 281
Query: 271 IMKSKKNADLVIK 283
I+ +++ A L++
Sbjct: 282 ILPTRERASLILT 294
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 5e-35
Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 44/253 (17%)
Query: 59 VQNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 118
V + +L+ Q P + +I+G+AG GKST + + +++
Sbjct: 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN----- 124
Query: 119 QVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGS 177
V+ DGF ++L+ + R+G P +++ LL L +++ Q +
Sbjct: 125 -------VEVITTDGFLYSNAKLEK----QGLMKRKGFPESYDMPSLLRVLNAIKSGQRN 173
Query: 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKWFI 231
V P + H D V + Q +VI++G + G + VS FD F+
Sbjct: 174 VRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFV 233
Query: 232 EVDLDTAMQRVLKRHI----STGKPPDVAKWRIEYNDRPNA-----------------EL 270
+ + + R + +T K P + E
Sbjct: 234 DAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMEN 293
Query: 271 IMKSKKNADLVIK 283
I+ K A L+++
Sbjct: 294 ILPYKNRAQLILE 306
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 5e-35
Identities = 42/235 (17%), Positives = 87/235 (37%), Gaps = 39/235 (16%)
Query: 71 QRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130
+ ++ P I+G+AG GKST A + + + ++
Sbjct: 80 EPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR------------VDLVT 127
Query: 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGD 189
DGF ++L + R+G P ++N L+ + ++++ AP + H D
Sbjct: 128 TDGFLYPNAELQR----RNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYD 183
Query: 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST 249
+ V ++I++G + G VS +FD +++ ++ Q + R ++
Sbjct: 184 IIPGAEQVVRHPDILILEGLNVLQTGP-TLMVSDLFDFSLYVDARIEDIEQWYVSRFLAM 242
Query: 250 GKP--------------------PDVAKWRIEYNDRPNA-ELIMKSKKNADLVIK 283
A+ +RPN E I+ ++ A LV++
Sbjct: 243 RTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLR 297
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 4e-24
Identities = 27/202 (13%), Positives = 68/202 (33%), Gaps = 30/202 (14%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
++G+ G +GK+TLA ++ + + + V MD + ++
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGIS--------------VCVFHMDDHIVERAKRY 69
Query: 143 AMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 201
+ + ++ L + L+ + P +DH + + +
Sbjct: 70 HTGNEE---WFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLS-DS 125
Query: 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIE 261
+++++G +L K+ FD +++ + R + ++ K+
Sbjct: 126 DMIMIEGVFLQR-----KEWRPFFDFVVYLDCPREIRFARENDQV-----KQNIQKFINR 175
Query: 262 YND-RPNAELIMKSKKNADLVI 282
Y + K AD+V
Sbjct: 176 YWKAEDYYLETEEPIKRADVVF 197
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 3e-20
Identities = 40/205 (19%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
++G++G +GKST+ +++ + + + + +L D F+ L+
Sbjct: 27 LIGVSGGTASGKSTVCEKIMELLGQNEVE---------QRQRKVVILSQDRFYKVLTA-- 75
Query: 143 AMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 200
+ K + P F+ L+ LKN+ +V P++D + + +V
Sbjct: 76 -EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVY-P 133
Query: 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 260
VV+ +G +F +++ MF + F++ D D + R + R + G+ + +
Sbjct: 134 ADVVLFEGILVFYS----QEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDLEQILTQY 189
Query: 261 EYNDRPNAEL-IMKSKKNADLVIKS 284
+P E + +KK AD++I
Sbjct: 190 TTFVKPAFEEFCLPTKKYADVIIPR 214
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 4e-20
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
++G++G +GKS++ A++V+ + + + +L D F+ L+
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQ---------NEVDYRQKQVVILSQDSFYRVLTSEQ 74
Query: 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202
+ P F+ L+L LK + +V P +D E+ + V
Sbjct: 75 -KAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 132
Query: 203 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIE 261
VV+ +G F ++V +F K F++ D DT + R + R IS G+ + +
Sbjct: 133 VVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYI 188
Query: 262 YNDRPNAEL-IMKSKKNADLVIKS 284
+P E + +KK AD++I
Sbjct: 189 TFVKPAFEEFCLPTKKYADVIIPR 212
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 2e-17
Identities = 32/204 (15%), Positives = 70/204 (34%), Gaps = 44/204 (21%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
I+G++G +GK+TLA + + K P +V+ D F S++
Sbjct: 23 IIGISGVTNSGKTTLA----KNLQKHLPN--------------CSVISQDDFFKPESEI- 63
Query: 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202
E K + N +++ + S D +
Sbjct: 64 --ETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEE----------IP 111
Query: 203 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEY 262
++I++G LF K + ++++ +F+ + + +R R +PPD + +
Sbjct: 112 ILIIEGFLLFNY----KPLDTIWNRSYFLTIPYEECKRR---RSTRVYQPPDSPGY---F 161
Query: 263 ND--RPNAEL-IMKSKKNADLVIK 283
+ P + + V+
Sbjct: 162 DGHVWPMYLKYRQEMQDITWEVVY 185
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-16
Identities = 44/209 (21%), Positives = 77/209 (36%), Gaps = 37/209 (17%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
++G+AG +GK+TLA + R + + +LPMD ++ L L
Sbjct: 8 VIGIAGGTASGKTTLAQALARTLGE-RV----------------ALLPMDHYYKDLGHLP 50
Query: 143 AMEDPKEAHARRG-----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 197
R P F+ L L + L V P +D V
Sbjct: 51 --------LEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPV 102
Query: 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVA 256
VVI++G + K++ + D K F++ D D R LKR + G+ +
Sbjct: 103 R-PAPVVILEGILVLYP----KELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGV 157
Query: 257 KWRIEYNDRPNAEL-IMKSKKNADLVIKS 284
+ +P + +K+ AD+++
Sbjct: 158 VAQYLEQVKPMHLHFVEPTKRYADVIVPR 186
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 9e-15
Identities = 29/216 (13%), Positives = 64/216 (29%), Gaps = 30/216 (13%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
I+ + G GAG ST V ++I+ ++ A + D FH +
Sbjct: 7 IISVTGSSGAGTST----VKHTFDQIFRREGVK----------AVSIEGDAFHRFNRADM 52
Query: 143 AMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 197
E + A F+ L + G ++ H + +
Sbjct: 53 KAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAP 112
Query: 198 GL---------QHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS 248
G ++ +G + + +++ + D K + ++ + + R +
Sbjct: 113 GNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLADLKIGVVPVINLEWIQKIHRDRA 171
Query: 249 T-GKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 283
T G + I I+ D+ +
Sbjct: 172 TRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQ 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 6e-12
Identities = 59/301 (19%), Positives = 94/301 (31%), Gaps = 88/301 (29%)
Query: 44 RNANAQPVFGK---TRSLVQNKTSLK-VLCSQRREIPVVEARHIVGLAGPPGAGKSTLAA 99
R N VF K +R +Q L+ L R V+ + G G+GK+ +A
Sbjct: 118 RLYNDNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVL-------IDGVLGSGKTWVAL 168
Query: 100 EVVR--RI-----NKI-WPQKASSFDSQVKPPDVATVLPMDGFHL---YLSQLDAMEDPK 148
+V ++ KI W + + P V +L + + + S+ D + K
Sbjct: 169 DVCLSYKVQCKMDFKIFW----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 149 -EAHARRGAPWTFNPLLLL----NCLKNLRNQGSVYAP----SFDHGVGDPVEDDILVGL 199
H+ + LL NCL L N V +F+ IL+
Sbjct: 225 LRIHSIQAE---LRRLLKSKPYENCLLVLLN---VQNAKAWNAFNLSC------KILLTT 272
Query: 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD--------LDTAMQRVLKRHISTGK 251
+ K V D FL +S + LD Q L R + T
Sbjct: 273 RFKQVT-D----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTN 326
Query: 252 P-----------PDVAKW-RIEYNDRPNAELIMKSKKNA-----------DLVI--KSID 286
P +A W ++ + I++S N L + S
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 287 I 287
I
Sbjct: 387 I 387
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290 | Back alignment and structure |
|---|
Score = 59.6 bits (143), Expect = 2e-10
Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 28/213 (13%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
+ +GP G+GKS + ++ + + + + S +D F+L
Sbjct: 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIG-----------YASIDDFYLTHEDQL 81
Query: 143 AMEDPKEAH---ARRGAPWTFNPLLLLNCLKNLRNQGS----------VYAPSFDHGVGD 189
+ + + + RG P T + LL L + N Y S G GD
Sbjct: 82 KLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 141
Query: 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL----DTAMQRVLKR 245
+ L + I++G +L + + ++ ++V+ + +
Sbjct: 142 RCPTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPE 201
Query: 246 HISTGKPPDVAKWRIEYNDRPNAELIMKSKKNA 278
S G Y R E + SK
Sbjct: 202 IKSLGIVFTTDNINNVYGWRLQQEHELISKVGK 234
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 21/186 (11%), Positives = 50/186 (26%), Gaps = 44/186 (23%)
Query: 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 140
+ + + GP G GKST + +++ + + D + +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDN------------------SAYIEGDIINHMVVG 43
Query: 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 200
P E+ W + + N + D+ + + +Q
Sbjct: 44 --GYRPPWESDELLALTWK----NITDLTVNFLLAQNDVV--LDYIAFPDEAEALAQTVQ 95
Query: 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRI 260
KV V+ ++ L + + ++R R +
Sbjct: 96 AKVDDVEIRFIIL------------------WTNREELLRRDALRKKDEQMGERCLELVE 137
Query: 261 EYNDRP 266
E+ +
Sbjct: 138 EFESKG 143
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.98 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.98 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.98 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.98 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.97 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.97 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.97 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.97 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.96 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.96 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.96 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.96 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.96 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.96 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.96 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.95 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.95 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.94 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.94 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.93 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.93 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.93 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.93 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.92 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.92 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.92 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.91 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.9 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.9 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.9 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.89 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.88 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.87 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.86 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.85 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 99.81 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.81 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.8 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 99.79 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.79 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.79 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.79 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.78 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.77 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.77 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.76 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.71 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.71 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.69 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.68 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.67 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.67 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.66 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.64 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.63 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.61 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.57 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.57 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.5 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.49 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.48 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.45 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.45 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.45 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.44 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 99.43 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.4 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.4 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.38 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.37 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.37 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.36 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.34 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.32 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.32 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.31 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.3 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.3 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.28 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.28 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.26 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.23 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.22 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.21 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.2 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.18 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.17 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 99.17 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.15 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 99.15 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.14 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.14 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.13 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.12 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.11 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 99.11 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.08 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.08 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.08 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.08 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.07 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.06 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.05 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.05 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.04 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.03 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.0 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.99 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.99 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 98.93 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 98.92 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 98.87 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.85 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.83 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.83 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.82 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.79 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.75 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.73 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.73 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.69 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.68 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.68 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.62 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.62 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 98.58 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.57 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.57 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.57 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.57 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.56 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 98.55 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.48 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.47 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.46 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 98.39 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.37 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.34 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 98.33 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.32 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.3 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 98.28 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.27 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.25 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.24 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.22 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.22 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 98.21 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.18 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 98.17 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.17 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.16 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.16 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.16 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 98.15 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.12 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.12 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.12 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.12 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.08 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 98.07 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.02 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.0 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.99 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.95 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.93 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.92 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.9 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.87 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.84 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.83 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.83 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.81 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.75 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.73 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.7 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.64 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.61 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.59 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.57 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.57 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.56 | |
| 4i1u_A | 210 | Dephospho-COA kinase; structural genomics, niaid, | 97.56 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.55 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.51 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.51 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.5 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.49 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.49 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.47 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.46 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.45 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.43 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.43 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.42 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.37 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.37 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.33 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.33 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.32 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.32 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.32 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.31 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.29 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.29 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.24 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.23 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.23 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.22 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.22 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 97.22 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.21 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.21 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.2 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.2 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.2 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.19 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.18 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.17 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.17 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.17 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.16 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.15 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.13 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.11 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.11 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.1 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 97.09 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.09 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.06 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.05 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.03 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 97.03 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.02 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.01 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.99 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.97 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.96 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.95 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.94 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.94 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.94 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.94 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.93 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.93 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.92 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.91 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.9 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.9 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.88 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.87 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.85 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.84 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.83 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.8 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.75 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.75 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.73 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.73 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.71 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.7 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.68 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.67 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.66 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.65 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.62 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.61 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.6 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.6 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.59 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.59 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.58 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.57 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 96.56 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.56 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.55 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.55 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.55 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.54 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.54 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.54 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.53 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.51 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.51 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.5 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.5 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.49 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.48 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.48 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.48 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.48 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.47 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.46 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.46 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.45 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.45 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.43 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.43 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.42 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 96.41 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.4 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.4 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.4 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.39 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.39 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.39 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.38 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.37 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.37 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 96.37 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.36 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.36 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.36 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.36 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.35 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.35 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.34 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.34 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.33 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.33 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.32 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.32 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.31 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.31 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.31 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.29 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.28 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.27 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.27 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.27 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 96.27 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 96.27 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.26 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.25 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.25 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.25 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.24 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.24 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.23 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.23 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.23 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.23 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.22 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 96.22 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.22 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.22 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.2 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.2 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.19 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.18 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.16 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.15 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.15 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.14 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.13 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.13 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.12 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.11 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.11 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.11 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.11 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.08 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.08 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.07 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.07 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.06 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.05 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.05 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.04 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.03 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.01 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.01 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.0 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.0 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.99 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.99 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.99 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.98 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.97 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.97 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.96 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.95 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.95 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.95 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.95 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.93 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.93 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 95.92 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 95.92 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.91 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.91 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.9 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.88 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.87 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.87 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.86 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 95.86 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.84 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.83 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.83 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.81 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.8 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.79 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.79 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.79 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.77 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.77 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.77 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.76 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.75 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.72 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.71 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.69 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.66 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.65 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.64 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.64 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.63 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.63 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.61 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.59 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.51 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.5 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 95.49 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.48 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.46 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.45 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.44 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.42 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.41 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.41 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.39 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.37 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 95.35 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.33 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.31 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.28 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.23 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.2 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.2 | |
| 3l0o_A | 427 | Transcription termination factor RHO; helicase, RH | 95.16 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 95.15 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 95.06 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.05 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 95.02 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.02 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.01 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 95.0 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.98 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.98 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 94.95 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.95 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 94.93 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.92 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 94.91 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.91 | |
| 2gks_A | 546 | Bifunctional SAT/APS kinase; transferase, sulfuryl | 94.9 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.89 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 94.83 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.81 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.8 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.79 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 94.77 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.78 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.76 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.75 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.73 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 94.72 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.68 |
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=302.00 Aligned_cols=198 Identities=14% Similarity=0.152 Sum_probs=166.5
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++.|++..++ +++ +++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~i~~ls~~y~~~~~L-----~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVL-----NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CCEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCB
T ss_pred cEEEEEeEEEEECCEEEE-----EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECcccccc
Confidence 478999999999998888 999 9999999999999999999999999999999 9999999988532
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.++|++|+...++ .+||++|+.++....+.+.....+++.++++.++ ...++++.+|||||||||+||+|
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p--~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFP--HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp CCGGGSCCEEECTTCCCCT--TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cchhhCCEEEEeCCCcCCC--CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 245999999965433 4899999998766555555555677888998888 45678899999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|++|++|||+..||.. +++.+.++.. ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999993 3333444332 24799999999987 555 89999999999864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=296.45 Aligned_cols=201 Identities=15% Similarity=0.101 Sum_probs=167.0
Q ss_pred CCCCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 47 NAQPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
..+++++++++++.|+. ..++ +++ ++|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL-----~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~ 91 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQAL-----NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQE 91 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEE
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEE-----EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEE
Confidence 56679999999999975 3456 888 9999999999999999999999999999999 999999998864
Q ss_pred C-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccC
Q 023126 122 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVG 188 (287)
Q Consensus 122 ~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~ 188 (287)
. ++.++|+||++..++ .+||++|+.++...++.+.....+++.++|+.++ ...++++.+||||||
T Consensus 92 i~~~~~~~~~~~r~~Ig~v~Q~~~l~~--~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqk 169 (366)
T 3tui_C 92 LTTLSESELTKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 169 (366)
T ss_dssp CSSCCHHHHHHHHTTEEEECSSCCCCT--TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHH
T ss_pred CCcCCHHHHHHHhCcEEEEeCCCccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHH
Confidence 3 235999999965433 4899999999887776655556677889999888 456788999999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|||+||+|++.+|++|++||++..||+ .+++.++++.+ .+|++|||++++.. |++ |++++.|+++
T Consensus 170 QRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999 45555555532 24699999999877 554 8999999998
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 250 ev~~ 253 (366)
T 3tui_C 250 EVFS 253 (366)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 8753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=299.64 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=168.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
.++++++++.|+...++ +++ +.+++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~yg~~~~L-----~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVS-----KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEECCEEEE-----eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHHH
Confidence 58899999999988888 999 9999999999999999999999999999999 9999999988543 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ .+||.+|+.++...++.++....+++.++++.++ ...++++.+|||||||||+||+|++.+|
T Consensus 75 r~ig~VfQ~~~l~p--~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 75 RGVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp SCEEEECTTCCCCT--TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 45999999965433 4999999999887776665556678889999887 4567889999999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++|||+..||. .+++.++++.+ ..||+|||+++++. |++ |++++.|++++++.
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999998 44555555533 24699999999987 555 89999999999764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=292.81 Aligned_cols=201 Identities=16% Similarity=0.193 Sum_probs=166.9
Q ss_pred CCCCccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 47 NAQPVFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
-+.++++++++++.| +...++ +++ +++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~ 81 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSV-----RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTD 81 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTT
T ss_pred CCCceEEEEEEEEEEcCCCEEE-----eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCc
Confidence 356789999999999 877777 888 9999999999999999999999999999999 9999999988543
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
++.++|++|+...++ .+|+++|+.++....+.+.....+++.++++.++ ...++++.+||||||||++||+|
T Consensus 82 ~~~~~r~ig~v~Q~~~l~~--~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 82 LPPQKRNVGLVFQNYALFQ--HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARA 159 (355)
T ss_dssp CCGGGSSEEEECGGGCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CChhhCcEEEEecCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 245999999965433 4899999999876655544444567888898887 45678889999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|++|++|||+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999998 44455555432 24699999999877 554 88999999998764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=287.89 Aligned_cols=201 Identities=16% Similarity=0.115 Sum_probs=166.4
Q ss_pred CCccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
.++++++++++.|+.. .++ +++ +++++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L-----~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~ 76 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHAL-----KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSR 76 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEE-----EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSH
T ss_pred CcEEEEEEEEEEECCCCeEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCccc
Confidence 4689999999999754 466 888 9999999999999999999999999999999 9999999998654
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
++.++|++|++..... .+|+++|+.++...++.+.....+++.++++.++ ...++++.+||||||||++||
T Consensus 77 ~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 77 KGIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp HHHHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred ccHHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence 1349999998642222 3799999999877666554445667888898887 456788889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhh-c---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~-~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+|++.+|++|++|||+..||+ .+++.+.++. + .+|++|||++++.. |++ |++++.|+++++...
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998 4555565554 2 24699999999876 554 899999999987543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=290.51 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=164.5
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
+++++++++.|+...++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFGNFTAL-----NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESSSSEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEECCEEEE-----EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHhH
Confidence 57899999999987777 888 9999999999999999999999999999999 9999999988543 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ ++|+++|+.++....+.+.....+++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 75 r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 75 RNVGLVFQNWALYP--HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp TTEEEECTTCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 45999999965433 5899999999876655544444567888998887 4567788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999 44455555432 24799999999876 554 89999999998864
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=279.62 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=161.8
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.+.++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 20 ~m~~~l~i~~l~~~y~~~~vL-----~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~ 91 (263)
T 2olj_A 20 HMLQMIDVHQLKKSFGSLEVL-----KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAK 91 (263)
T ss_dssp --CCSEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSST
T ss_pred CchheEEEEeEEEEECCEEEE-----EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCc
Confidence 344589999999999987777 888 9999999999999999999999999999999 9999999988543
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHH-HhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchh
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~-~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ 192 (287)
++.++|++|++..++ .+|+++|+.+.. ...+.+.....+++.++++.++ ...++++.+||||||||++
T Consensus 92 ~~~~~~~~~~i~~v~Q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 92 DTNLNKVREEVGMVFQRFNLFP--HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp TCCHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred cccHHHHhCcEEEEeCCCcCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence 124899999965433 489999999864 3334332233456788888887 3467788899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
||+|++.+|++|++|||+..||+ .+++.++++.+ .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999 44555555433 24699999999876 444 88888898888753
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=279.66 Aligned_cols=199 Identities=14% Similarity=0.112 Sum_probs=161.5
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 4 ~~~l~i~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGGHEVL-----KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp -CCEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEEC
T ss_pred CceEEEeeEEEEECCEEEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccccc
Confidence 4579999999999987777 888 9999999999999999999999999999999 99999999885432
Q ss_pred -----------------ceeEEEeCCCCCCCcccCCccccHHHHH-HhcCCCCCchHHHHHHHHHHhcc--C-CCCCCCC
Q 023126 124 -----------------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--Q-GSVYAPS 182 (287)
Q Consensus 124 -----------------~~i~~v~qd~~~~~~~~ltv~e~i~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~-~~~~~~~ 182 (287)
+.++|++|++..++ .+|+.+|+.+.. ..++.+.....+++.++++.++. . .++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~--~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCC--CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 24899999965333 489999999854 33333322334567888888873 3 5788889
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hcccc
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
||||||||++||+|++.+|++|++|||+..||. .+++.++++.+ .+|++|||++++.. |++ |++++
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999 44455555433 34699999999876 544 88888
Q ss_pred CCChHHHHH
Q 023126 249 TGKPPDVAK 257 (287)
Q Consensus 249 ~G~~~ev~~ 257 (287)
.|+++++..
T Consensus 234 ~g~~~~~~~ 242 (262)
T 1b0u_A 234 EGDPEQVFG 242 (262)
T ss_dssp EECHHHHHH
T ss_pred eCCHHHHHh
Confidence 999888753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=290.58 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=158.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
+++++++++.|+...++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .
T Consensus 11 ~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAV-----NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEECCEEEE-----eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChhh
Confidence 58999999999987777 888 9999999999999999999999999999999 9999999988543 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ ++|+++|+.++...++.+.....+++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 83 r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 160 (372)
T 1v43_A 83 RNISMVFQSYAVWP--HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP 160 (372)
T ss_dssp GTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC
T ss_pred CcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 45999999965333 5899999988654444333334567888888887 4567889999999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 161 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 161 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999998 34455555432 24799999999876 554 89999999998864
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=290.86 Aligned_cols=197 Identities=16% Similarity=0.110 Sum_probs=162.3
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
+++++++++.|+...++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAV-----DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEECCEEEE-----eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChhh
Confidence 57899999999987777 888 9999999999999999999999999999999 9999999988542 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ ++|+++|+.++...++.+.....+++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 75 r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 75 REVGMVFQNYALYP--HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp TTEEEECSSCCCCT--TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 45999999965433 5899999998654443332333457788888887 4567888999999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999 34455555432 24699999999876 554 89999999998864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=290.51 Aligned_cols=197 Identities=14% Similarity=0.088 Sum_probs=164.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+...++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAV-----REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECccccccc
Confidence 57899999999987777 888 9999999999999999999999999999999 9999999887432
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
.+.++|++|+...++ ++|+++|+.++...++.+.....+++.++++.++ ...++++.+||||||||++||+
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYP--HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 235999999965433 5999999999876665544444567888888887 4567888999999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++.+|++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999 34455555432 24799999999876 554 89999999998864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=275.85 Aligned_cols=197 Identities=14% Similarity=0.137 Sum_probs=163.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.++++++++++.|+.+.++ +++ +++++||++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 9 ~~~l~~~~l~~~~~~~~vL-----~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALI-----NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp CCEEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCH
T ss_pred cceEEEEeEEEEeCCeeEE-----EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCH
Confidence 3589999999999998888 999 9999999999999999999999999999999 99999999886532
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.++|++|++...+. +|+.+|+.++...+ ......+++.++++.++ ...++++.+||||||||++||+|+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~--~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFP--FSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp HHHHHHEEEECSCCCCCSC--CBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHhheEEEEecCCccCCC--CCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 248999998765443 89999998764433 23345667888888888 345678889999999999999999
Q ss_pred cc------CccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 198 GL------QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 198 ~~------~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+. +|++|++|||+..||+ .+++.++++.+ ..|++|||++++.. |++ |++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999998 45555555532 24689999999876 554 8999999998875
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=289.63 Aligned_cols=197 Identities=14% Similarity=0.071 Sum_probs=162.5
Q ss_pred ccccCcccccccccc--hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKTSL--KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~--~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
+++++++++.|+... ++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~l~i~~l~~~y~~~~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVAL-----DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEE-----EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEECCEeeeeE-----eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECccccc
Confidence 588999999998876 77 888 9999999999999999999999999999999 9999999887432
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
++.++|++|+...++ ++|+++|+.++...++.+.....+++.++++.++ ...++++.+||||||||++||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYP--NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCT--TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred ccCChhhCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 245999999965433 5899999998765444443334567888898887 456788899999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+|++.+|++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999 44455555432 24699999999876 554 89999999998764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-38 Score=271.01 Aligned_cols=180 Identities=15% Similarity=0.053 Sum_probs=148.0
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 2 ~~~l~~~~l~~~y~~~~~l-----~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 2 AEILRAENIKKVIRGYEIL-----KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp CEEEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCH
T ss_pred CcEEEEEeEEEEECCEeeE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCH
Confidence 3578999999999987777 888 9999999999999999999999999999999 99999999885431
Q ss_pred --------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhh
Q 023126 124 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 124 --------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~i 193 (287)
..++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++ ...++++.+||||||||+++
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 74 KELSLLRNRKLGFVFQFHYLIP--ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HHHHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred HHHHHHHhCcEEEEecCcccCC--CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 34999999965433 4899999998765554332334556788888887 34567888999999999999
Q ss_pred hhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
|+|++.+|+++++|||+..||. .+++.+.++.+ ..|++|||++.+
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 9999999999999999999999 34455555432 246999999986
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=285.25 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=159.8
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++++++.|+.. ++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 1 ml~~~~l~~~y~~~-~l-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SL-----DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp CEEEEEEEEECSSC-EE-----EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHH
T ss_pred CEEEEEEEEEECCE-EE-----eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhh
Confidence 36788999999876 77 888 9999999999999999999999999999999 99999999885432
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ ++|+++|+.++...++.+. . +++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 72 r~ig~v~Q~~~l~~--~ltv~enl~~~~~~~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 72 HDIAFVYQNYSLFP--HMNVKKNLEFGMRMKKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp HTCEEECTTCCCCT--TSCHHHHHHHHHHHHCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CcEEEEecCcccCC--CCCHHHHHHHHHHHcCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 34999999965433 5899999999876554432 2 67888888887 4567888899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999 44555555432 24699999999876 554 8888889998875
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=275.24 Aligned_cols=200 Identities=14% Similarity=0.063 Sum_probs=162.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 12 ~~~~l~i~~l~~~y~~~~vl-----~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKEIL-----KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp --CCEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCH
T ss_pred cCCeEEEEEEEEEECCEEEE-----EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccH
Confidence 35789999999999987777 888 9999999999999999999999999999999 99999999885432
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++ ...++++.+||||||||++||+|+
T Consensus 84 ~~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 84 HEVRKLISYLPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp HHHHTTEEEECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHhhcEEEEcCCCCCCC--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 34999999975433 4899999998765554432223456778888887 345778889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|++|++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999 45555555542 24689999999865 444 88888888888754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=270.28 Aligned_cols=199 Identities=15% Similarity=0.068 Sum_probs=159.0
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
...++++++++++.|+.+.++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 2 ~~~~~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~ 73 (240)
T 1ji0_A 2 VSDIVLEVQSLHVYYGAIHAI-----KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNK 73 (240)
T ss_dssp CCSEEEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTC
T ss_pred CCCceEEEEeEEEEECCeeEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCC
Confidence 446789999999999987777 888 9999999999999999999999999999999 99999999885431
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---cCCCCCCCCCCcccCCchhh
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv~i 193 (287)
..++|++|++..++ .+|+.||+.+... .........+++.++++.++ ...++++.+||||||||++|
T Consensus 74 ~~~~~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~l 150 (240)
T 1ji0_A 74 PAHVINRMGIALVPEGRRIFP--ELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp CHHHHHHTTEEEECSSCCCCT--TSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHH
T ss_pred CHHHHHhCCEEEEecCCccCC--CCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHH
Confidence 23999999975433 4899999987531 11222333456677777773 45678889999999999999
Q ss_pred hhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|+|++.+|++|++|||+..||. .+++.++++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 151 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999 44455555432 34699999988765 444 7888888887764
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=270.19 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=151.6
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
+++++++++.|+. ..++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L-----~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYAL-----KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTC
T ss_pred CEEEEEEEEEeCCCCcceeeE-----EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccC
Confidence 3678899999974 3456 888 9999999999999999999999999999999 99999999885431
Q ss_pred ----------ceeEEEeCCCCCCCcccCCccccHHHHHHhc---CCCCCchHHHHHHHHHHhccC---CCCCCCCCCccc
Q 023126 124 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 187 (287)
Q Consensus 124 ----------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~ 187 (287)
..++|++|++..++ .+|+++|+.+..... ........+++.++++.++.. .++++.+|||||
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCT--TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred CHHHHHHHhhccEEEEecCCccCC--CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHH
Confidence 24999999975443 489999999876543 222223455677888888732 377888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||++||+|++.+|++|++|||+..||+ .+++.+.++.. .+|++|||++.+.. |++ |++++.++++
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999998 45555555532 24699999996522 443 7777766665
Q ss_pred HH
Q 023126 254 DV 255 (287)
Q Consensus 254 ev 255 (287)
++
T Consensus 231 ~~ 232 (235)
T 3tif_A 231 GF 232 (235)
T ss_dssp --
T ss_pred hh
Confidence 53
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=274.10 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=158.3
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 5 ~~~l~i~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKAL-----DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEP 76 (257)
T ss_dssp CEEEEEEEEEEEETTEEEE-----EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCH
T ss_pred CcEEEEeeeEEEECCEeeE-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCH
Confidence 4579999999999987777 888 9999999999999999999999999999999 99999999885431
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHh--cC-----------CCCCchHHHHHHHHHHhc--cCCCCCCCCC
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLR--NQGSVYAPSF 183 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~--~~-----------~~~~~~~~~~~~~l~~l~--~~~~~~~~~l 183 (287)
..++|++|++..++ .+|+.||+.+.... .+ .......+++.++++.++ ...++++.+|
T Consensus 77 ~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 154 (257)
T 1g6h_A 77 AELYHYGIVRTFQTPQPLK--EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL 154 (257)
T ss_dssp HHHHHHTEEECCCCCGGGG--GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred HHHHhCCEEEEccCCccCC--CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence 24899999965333 48999999875432 12 122223456788888887 4467788899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|||||||++||+|++.+|++|++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999 44555555433 24689999998765 544 788888
Q ss_pred CChHH
Q 023126 250 GKPPD 254 (287)
Q Consensus 250 G~~~e 254 (287)
|++++
T Consensus 235 g~~~~ 239 (257)
T 1g6h_A 235 GRGEE 239 (257)
T ss_dssp EESHH
T ss_pred eCHHH
Confidence 88888
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=275.46 Aligned_cols=202 Identities=13% Similarity=0.024 Sum_probs=159.2
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
...++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 17 ~~~~~l~~~~l~~~y~~~~vL-----~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~ 88 (279)
T 2ihy_A 17 GSHMLIQLDQIGRMKQGKTIL-----KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKV 88 (279)
T ss_dssp --CEEEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC--
T ss_pred CCCceEEEEeEEEEECCEEEE-----EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccc
Confidence 345689999999999987777 888 9999999999999999999999999999999 99999999886542
Q ss_pred --------ceeEEEeCCCCCCCcccCCccccHHHHHHh----cCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCC
Q 023126 124 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGD 189 (287)
Q Consensus 124 --------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~----~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~q 189 (287)
+.++|++|++...+...+|+++|+.++... ++.......+++.++++.++ ...++++.+|||||||
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp -CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred cCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence 349999998643333347999999764211 11122233456778888887 4467888899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---Cc--eEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EK--WFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~--i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|++||+|++.+|++|++|||+..||+ .+++.+.++.+ .+ |++|||++++.. |++ |++++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999 44455555432 46 889999998755 544 7888888887
Q ss_pred HHH
Q 023126 254 DVA 256 (287)
Q Consensus 254 ev~ 256 (287)
++.
T Consensus 249 ~~~ 251 (279)
T 2ihy_A 249 DIL 251 (279)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=265.98 Aligned_cols=198 Identities=15% Similarity=0.101 Sum_probs=158.0
Q ss_pred ccccCccccccc--c---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNK--T---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~--~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
+++++++++.|+ . +.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl-----~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKAL-----ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCCcccccee-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECch
Confidence 578899999997 4 4566 888 9999999999999999999999999999999 9999999988653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC----CCCCCCCCCcccCCchhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~~qrv~ia~ 195 (287)
++.++|++|++...+. .+|+.+|+.+....+ .+.....+++.++++.++.. .++++.+||||||||++||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAr 151 (266)
T 2yz2_A 74 YEIRRNIGIAFQYPEDQFF-AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIAS 151 (266)
T ss_dssp HHHGGGEEEECSSGGGGCC-CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHH
T ss_pred HHhhhhEEEEeccchhhcC-CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHH
Confidence 2459999998532222 379999998754332 33334456788888888754 57788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|++.+|++|++|||+..||. .+++.+.++.+ .+|++|||++.+.. |++ |++++.|+++++...
T Consensus 152 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 152 VIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999 44555555432 24699999998765 444 788888888887643
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=262.58 Aligned_cols=192 Identities=15% Similarity=0.090 Sum_probs=152.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
+++++++++.|+. .+ +++ +.+++ +++||+||||||||||+|+|+|+++ |++|+|.++|.+. .
T Consensus 1 ml~~~~l~~~y~~--~l-----~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FR-----LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPER 69 (240)
T ss_dssp CCEEEEEEEEETT--EE-----EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTT
T ss_pred CEEEEEEEEEeCC--EE-----eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhh
Confidence 3678899999975 25 788 99999 9999999999999999999999999 9999999887432 3
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|++..++ .+|+++|+.+....++. ....+++.++++.++ ...++++.+||||||||+++|+|++.+|
T Consensus 70 ~~i~~v~q~~~l~~--~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 145 (240)
T 2onk_A 70 RGIGFVPQDYALFP--HLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP 145 (240)
T ss_dssp SCCBCCCSSCCCCT--TSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEcCCCccCC--CCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 45899999965433 48999999875322211 112456778888887 3456788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+++++|||+..||. .+++.+.++.. ..|++|||++++.. |++ |++++.|+++++..
T Consensus 146 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 146 RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999 45555555532 34699999998866 444 88888899888754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=261.22 Aligned_cols=191 Identities=12% Similarity=0.102 Sum_probs=153.7
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
++++++++++.|+ .+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.+ .+.++
T Consensus 3 ~~l~i~~l~~~y~~~~~vl-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~-----~~~i~ 69 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLF-----QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV-----YQSIG 69 (253)
T ss_dssp EEEEEEEEEEEETTTTEEE-----EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE-----CSCEE
T ss_pred ceEEEeeEEEEeCCCCeEE-----EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE-----eccEE
Confidence 4689999999998 77777 888 9999999999999999999999999999999 99999973 34599
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhc-C---CCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARR-G---APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~-~---~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
|++|++..++ .+|+.+|+.+....+ + .+...+.+++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 70 ~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 147 (253)
T 2nq2_C 70 FVPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC 147 (253)
T ss_dssp EECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC
T ss_pred EEcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999975443 379999998754322 2 112233456788888887 4467788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++|++|||+..||. .+++.+.++.+ .+|++|||++.+.. |++ |+ ++.|+++++.
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 148 KLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp SEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999 44555555543 24699999999865 444 78 8788877764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-35 Score=250.43 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=146.0
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---Cce
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDV 125 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~~~ 125 (287)
.+++++++++.|+. .++ +++ +.+++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. ...
T Consensus 9 ~~l~~~~ls~~y~~-~il-----~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVL-----ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGK 79 (214)
T ss_dssp CEEEEEEEEEESSS-EEE-----EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGG
T ss_pred ceEEEEEEEEEeCC-eEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCc
Confidence 46889999999987 777 888 9999999999999999999999999999999 9999999988542 345
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCC-CCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
++|++|++..++ .+|+.+|+.+....++. .. ..+++.++++.++... ++++.+||||||||+++|+|++.+|+++
T Consensus 80 i~~v~q~~~~~~--~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ll 155 (214)
T 1sgw_A 80 IFFLPEEIIVPR--KISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY 155 (214)
T ss_dssp EEEECSSCCCCT--TSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred EEEEeCCCcCCC--CCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999976433 48999999987654443 22 2567788888887322 7778899999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++|||+..||. .+++.+.++.+ .+|++|||++++..
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 156 VLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99999999999 34455555432 34699999988654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=261.20 Aligned_cols=197 Identities=13% Similarity=0.084 Sum_probs=151.9
Q ss_pred CCccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-
Q 023126 49 QPVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~- 123 (287)
..+++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl-----~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~ 85 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVL-----QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQ 85 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGG
T ss_pred CceEEEEEEEEEeCCCCCceee-----EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEccc
Confidence 357899999999986 5566 888 9999999999999999999999999999999 99999999886431
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH------HHHHHHHHHh--c--cCCCCCCCCCCcc
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP------LLLLNCLKNL--R--NQGSVYAPSFDHG 186 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~------~~~~~~l~~l--~--~~~~~~~~~lSgG 186 (287)
..++|++|++.. +. .|+.+|+.++.... ...... ..+.+.++.+ + ...++++.+||||
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l-~~--~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG 160 (271)
T 2ixe_A 86 YDHHYLHTQVAAVGQEPLL-FG--RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160 (271)
T ss_dssp BCHHHHHHHEEEECSSCCC-CS--SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHH
T ss_pred CCHHHHhccEEEEecCCcc-cc--ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHH
Confidence 349999999754 33 59999997642111 110111 1123445554 2 3356778899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
|+||++||+|++.+|++|++|||+..||. .+++.|.++.. .+|++|||++.+.. |++ |++++.|++
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999 45555666543 24689999998754 444 788888998
Q ss_pred HHHHHH
Q 023126 253 PDVAKW 258 (287)
Q Consensus 253 ~ev~~~ 258 (287)
+++...
T Consensus 241 ~~l~~~ 246 (271)
T 2ixe_A 241 LQLMER 246 (271)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887643
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=249.24 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=149.7
Q ss_pred ccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.| +.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~vl-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 72 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQIL-----RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLE 72 (243)
T ss_dssp CEEEEEEEECSSSSSCSE-----EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCS
T ss_pred CEEEEEEEEEeCCCCceE-----EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 36788999999 566666 888 9999999999999999999999999999999 9999999887432
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CC-----------CCCCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QG-----------SVYAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~-----------~~~~~~lSgG~ 187 (287)
++.++|++|++.. +. .|+.+|+.++.. . ....+++.+.++.++. .. +.++.+|||||
T Consensus 73 ~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 73 NWRSQIGFVSQDSAI-MA--GTIRENLTYGLE----G-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp CCTTTCCEECCSSCC-CC--EEHHHHTTSCTT----S-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred HHHhhEEEEcCCCcc-cc--ccHHHHHhhhcc----C-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence 3458999999754 33 499999875311 1 1234456666766652 11 23456999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||+++|+|++.+|+++++|||+..||. .+++.+.++.. .+|++|||++.+.. |++ |++++.|+++++
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999998 56666665543 24699999998755 444 788899998887
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
..
T Consensus 225 ~~ 226 (243)
T 1mv5_A 225 VA 226 (243)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=255.05 Aligned_cols=198 Identities=17% Similarity=0.041 Sum_probs=153.2
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCcccccCCCCCC--
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~--l~~~~p~~G~i~~~~~~~~-- 123 (287)
.++++++++++.|+.+.++ +++ +++++|++++|+||||||||||+|+|+|+ ++ |++|+|.++|.+..
T Consensus 18 ~~~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~ 89 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAIL-----RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLAL 89 (267)
T ss_dssp --CEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGS
T ss_pred CceEEEEeEEEEECCEEEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcC
Confidence 4579999999999887777 888 99999999999999999999999999998 46 89999999886431
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHH-h---cCCCC---CchHHHHHHHHHHhccC---CCCCCC-CCCc
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPW---TFNPLLLLNCLKNLRNQ---GSVYAP-SFDH 185 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~---~~~~~---~~~~~~~~~~l~~l~~~---~~~~~~-~lSg 185 (287)
..++|++|++..++ .+|+.+|+.+... . ++... ....+++.++++.++.. .++++. +|||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~l~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 167 (267)
T 2zu0_C 90 SPEDRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG 167 (267)
T ss_dssp CHHHHHHHTEEEECSSCCCCT--TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred CHHHHhhCCEEEEccCccccc--cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 13899999975443 4899999876542 1 22211 11234677888888742 456666 5999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhcC---ceEEEeCHHHHHH----HHh----hccccCC
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTG 250 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~~---~i~vtHd~~~~~~----rv~----gr~v~~G 250 (287)
|||||++||+|++.+|++|++|||+..||.. +++.++++.+. +|++|||++++.. |++ |++++.|
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g 247 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999993 44555554332 4689999988642 443 7888888
Q ss_pred ChHHHH
Q 023126 251 KPPDVA 256 (287)
Q Consensus 251 ~~~ev~ 256 (287)
+++++.
T Consensus 248 ~~~~~~ 253 (267)
T 2zu0_C 248 DFTLVK 253 (267)
T ss_dssp CTTHHH
T ss_pred CHHHHh
Confidence 888764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=252.77 Aligned_cols=193 Identities=18% Similarity=0.056 Sum_probs=148.3
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~--l~~~~p~~G~i~~~~~~~~---- 123 (287)
+++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+ ++ |++|+|.++|.+..
T Consensus 3 ~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASIDGETIL-----KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEECCEEEE-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCCH
Confidence 68899999999987777 888 99999999999999999999999999998 78 99999999885431
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHh-cCC--CCCchHHHHHHHHHHhcc---CCCCCCCC-CCcccCCch
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRN---QGSVYAPS-FDHGVGDPV 191 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~--~~~~~~~~~~~~l~~l~~---~~~~~~~~-lSgG~~qrv 191 (287)
..++|++|++..++ .+|+.+|+.+.... .+. ......+++.++++.++. ..++++.+ ||||||||+
T Consensus 75 ~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVP--GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CC--SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred HHHHhCcEEEeccCCcccc--CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 23789999976443 48999999876432 222 111224567788888774 24677888 999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH----HHh----hccccCCChH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPP 253 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~----rv~----gr~v~~G~~~ 253 (287)
+||+|++.+|++|++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.|+++
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999999 45555555533 24699999998753 443 7888888876
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-34 Score=260.00 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=150.2
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
..++++++++.|+ ...++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 52 ~~i~~~~vs~~y~~~~~vL-----~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETL-----QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CCEEEEEEEEESSTTCEEE-----EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCH
T ss_pred CeEEEEEEEEEcCCCCcee-----eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCH
Confidence 4688999999995 45566 888 9999999999999999999999999999999 99999999987543
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc-------------cCCCCCCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~lSgG 186 (287)
..++|++|++..+ . .|+++|+.++.... ..+.+.+.++.++ .........||||
T Consensus 124 ~~~r~~i~~v~Q~~~lf-~--~Tv~eNi~~~~~~~------~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGG 194 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLF-N--DTIADNIRYGRVTA------GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194 (306)
T ss_dssp HHHHHTEEEECSSCCCC-S--EEHHHHHHTTSTTC------CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHH
T ss_pred HHHhcceEEEecCCccC-c--ccHHHHHHhhcccC------CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHH
Confidence 3499999997644 3 59999997643211 1223333333222 1223456799999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||++||+|++.+|++|++||++..||. .+++.+.++.. .+|+|||+++.+.. |++ |++++.|++++
T Consensus 195 qrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~e 274 (306)
T 3nh6_A 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEA 274 (306)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999998 34445555433 34799999999876 554 89999999999
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
+...
T Consensus 275 l~~~ 278 (306)
T 3nh6_A 275 LLSR 278 (306)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8753
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-34 Score=250.75 Aligned_cols=188 Identities=15% Similarity=0.179 Sum_probs=145.8
Q ss_pred cccCcccccc--cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 52 FGKTRSLVQN--KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 52 ~~~~~~~~~~--~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
++++++++.| +.+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 8 ~~~~~l~~~y~~~~~~vl-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVIL-----DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEESSTTSCEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred eeEEEEEEEeCCCCccee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 5678999999 356666 888 9999999999999999999999999999999 99999999885432
Q ss_pred ---ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------------CCCCCCCCCCccc
Q 023126 124 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 187 (287)
Q Consensus 124 ---~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSgG~ 187 (287)
..++|++|++..+ . .|+++|+.++. + ....+++.+.++.++. ..+.++.+|||||
T Consensus 80 ~~~~~i~~v~Q~~~l~-~--~tv~enl~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLL-N--RSIIDNISLAN-----P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp HHHHHEEEECSSCCCT-T--SBHHHHHTTTC-----T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred HHHhcEEEEeCCCccc-c--ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 2489999997543 3 59999997641 1 1123444455554431 2234567999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||++||+|++.+|+++++|||+..||. .+++.++++.. .+|++|||++.+.. |++ |++++.|+++++
T Consensus 151 ~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 151 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999 34455554432 24699999998754 444 788888988887
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 231 ~ 231 (247)
T 2ff7_A 231 L 231 (247)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.1e-34 Score=251.19 Aligned_cols=189 Identities=15% Similarity=0.120 Sum_probs=153.0
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|+. +.++ +++ ++++ |++++|+||||||||||+|+|+|++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~~~~il-----~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~ 70 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSL-----ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKI 70 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEE-----EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGC
T ss_pred CEEEEEEEEEeCCCCccceeE-----EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcch
Confidence 3678899999987 6677 888 9999 9999999999999999999999986 8999999887432
Q ss_pred --CceeE-EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhh
Q 023126 123 --PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 --~~~i~-~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~a 196 (287)
++.++ |++|++.. .+|+.+|+.+....+ ....+++.++++.++.. .++++.+||||||||+++|+|
T Consensus 71 ~~~~~i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 71 RNYIRYSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLA 142 (263)
T ss_dssp SCCTTEEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHH
T ss_pred HHhhheEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 34589 99999654 389999998865433 22356678888888743 567888999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH----HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~----rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|||+..||.. +++.++++....|++|||++.+.. +++ |++++.|+++++..
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999994 445555554445799999988754 333 78888888888754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-34 Score=251.03 Aligned_cols=187 Identities=18% Similarity=0.127 Sum_probs=149.2
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++. .++ +++ +.+++|++++|+||||||||||+|+|+|+++ |+ |+|.++|.+.
T Consensus 3 ~~l~~~~l~~~----~vl-----~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~ 69 (249)
T 2qi9_C 3 IVMQLQDVAES----TRL-----GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSAT 69 (249)
T ss_dssp EEEEEEEEEET----TTE-----EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHH
T ss_pred cEEEEEceEEE----EEE-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHH
Confidence 36788888876 344 788 9999999999999999999999999999999 99 9999988643
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
++.++|++|++..++ .+|+.+|+.+... .. . ..+++.++++.++ ...++++.+||||||||+++|+|++
T Consensus 70 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~-~~---~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~ 142 (249)
T 2qi9_C 70 KLALHRAYLSQQQTPPF--ATPVWHYLTLHQH-DK---T-RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 142 (249)
T ss_dssp HHHHHEEEECSCCCCCT--TCBHHHHHHTTCS-ST---T-CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHhceEEEECCCCccCC--CCcHHHHHHHhhc-cC---C-cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 134899999976433 4899999976421 11 1 2566778888887 4467788899999999999999999
Q ss_pred cCcc-------EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 199 LQHK-------VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 199 ~~a~-------~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
.+|+ +|++|||+..||. .+++.++++.. ..|++|||++.+.. |++ |++++.|+++++.
T Consensus 143 ~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 143 QITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred cCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999 9999999999999 45555555532 24699999999865 444 7888888888764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-34 Score=247.72 Aligned_cols=187 Identities=11% Similarity=0.088 Sum_probs=144.2
Q ss_pred ccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 51 VFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 51 ~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
+++++++++.|+ .+.++ +++ +.+++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTL-----NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CEE
T ss_pred eEEEEEEEEEeCCCCCcee-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EEE
Confidence 578999999997 45666 888 9999999999999999999999999999999 9999999987 389
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHH---HHHhcc-------CCCCCCCCCCcccCCchhhhhhh
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRN-------QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~---l~~l~~-------~~~~~~~~lSgG~~qrv~ia~al 197 (287)
|++|++. ++ .+|+.+|+.+... .. ....+++.+. ++.++. ..++++.+||||||||+++|+|+
T Consensus 70 ~v~Q~~~-~~--~~tv~enl~~~~~---~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL 142 (237)
T 2cbz_A 70 YVPQQAW-IQ--NDSLRENILFGCQ---LE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 142 (237)
T ss_dssp EECSSCC-CC--SEEHHHHHHTTSC---CC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred EEcCCCc-CC--CcCHHHHhhCccc---cC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999975 33 3799999976421 11 1222233222 222321 13567889999999999999999
Q ss_pred ccCccEEEEcCcccCCChhhHHHHHHhh-------c--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMF-------D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe~~~~~l~~~~-------~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|+++++|||+..||....+.+.+.. . .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 9999999999999999995555544433 1 24689999987643 443 78888899888754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-32 Score=237.66 Aligned_cols=186 Identities=11% Similarity=0.106 Sum_probs=142.7
Q ss_pred CCccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 49 QPVFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 49 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
..+++++++++.|+ .+.++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++| .
T Consensus 4 ~~~l~~~~l~~~y~~~~~~il-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~ 70 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPVL-----KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----R 70 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCSE-----EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----C
T ss_pred cceEEEEEEEEEeCCCCceee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----E
Confidence 44788999999995 45666 888 9999999999999999999999999999999 9999999987 3
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------c----CCCCCCCCCCcccCCchh
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------N----QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~----~~~~~~~~lSgG~~qrv~ 192 (287)
++|++|++..+ + .|+++|+.++. ... ..+..+.++.++ . ..+.++.+||||||||++
T Consensus 71 i~~v~q~~~~~-~--~tv~enl~~~~-----~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 71 ISFCSQFSWIM-P--GTIKENIIFGV-----SYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp EEEECSSCCCC-S--BCHHHHHHTTS-----CCC--HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred EEEEecCCccc-C--CCHHHHhhccC-----CcC--hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 89999997543 3 49999987631 111 111222222211 1 123346799999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChhhHHHHHHh-hc------CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~~~~~l~~~-~~------~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|+|++.+|+++++|||+..||....+.+.+. .. .+|++|||++.+.. +++ |++++.|+++++..
T Consensus 141 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999666666553 21 24689999998754 443 78888888887643
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-33 Score=258.57 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=150.3
Q ss_pred CCccccCcccccc--cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 49 QPVFGKTRSLVQN--KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
...++++++++.| +...++ +++ ++|++||+++|+||||||||||+++|+|++ +++|+|.++|.+..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L-----~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~ 87 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAIL-----ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSI 87 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSE-----EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSS
T ss_pred CCeEEEEEEEEEecCCCeEEe-----eceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcC
Confidence 3568999999999 667777 898 999999999999999999999999999987 56899999986532
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCC-----------CC
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPS-----------FD 184 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~-----------lS 184 (287)
+.++|++|+...+ + +|+++|+.+. .....+++.++++.++ ...++++.+ ||
T Consensus 88 ~~~~~rr~ig~v~Q~~~lf-~--~tv~enl~~~-------~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LS 157 (390)
T 3gd7_A 88 TLEQWRKAFGVIPQKVFIF-S--GTFRKNLDPN-------AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157 (390)
T ss_dssp CHHHHHHTEEEESCCCCCC-S--EEHHHHHCTT-------CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSC
T ss_pred ChHHHhCCEEEEcCCcccC-c--cCHHHHhhhc-------cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCC
Confidence 4599999996543 3 6999988521 1223456777777776 334566665 99
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhh----HHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~----~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|++.+|++|++||++..||... ++.++++.. .+|++|||++.+.. |++ |++++.|++
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~ 237 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSI 237 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999844 444444332 24699999876544 554 899999999
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
++++.
T Consensus 238 ~el~~ 242 (390)
T 3gd7_A 238 LELYH 242 (390)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99865
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-33 Score=247.65 Aligned_cols=191 Identities=15% Similarity=0.077 Sum_probs=146.7
Q ss_pred CCccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 49 QPVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
.++++++++++.|+.. .++ +++ +.+++|++++|+||||||||||+|+|+|+++ | +|+|.++|.+.
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~vl-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~ 85 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRTL-----KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNK 85 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCSE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGG
T ss_pred CCeEEEEEEEEEeCCCCcCcee-----EeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhh
Confidence 4578999999999863 456 888 9999999999999999999999999999997 7 89999988543
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------------CCCCCCCCC
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSF 183 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~l 183 (287)
+..++|++|++..+ . .|+++|+.++. .. ...+++.+.++.++. ..+.++.+|
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~-~--~tv~enl~~~~-----~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 86 YNRNSIRSIIGIVPQDTILF-N--ETIKYNILYGK-----LD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp BCHHHHHTTEEEECSSCCCC-S--EEHHHHHHTTC-----TT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred cCHHHHhccEEEEcCCCccc-c--cCHHHHHhccC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 23499999997543 3 59999987631 11 123344444444331 123567799
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGK 251 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~ 251 (287)
|||||||+++|+|++.+|++|++|||+..||. .+++.+.++.. .+|++|||++.+.. |++ |++++.|+
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGT 236 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999 34445555433 24699999998654 444 78888899
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 237 ~~~l~~ 242 (260)
T 2ghi_A 237 HKDLLK 242 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-31 Score=256.62 Aligned_cols=192 Identities=15% Similarity=0.087 Sum_probs=150.9
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..++++++++.|++ +.++ +++ +++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l-----~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~ 411 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPAL-----SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYK 411 (582)
T ss_pred CeEEEEEEEEEcCCCCcccc-----ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCC
Confidence 46899999999975 5566 888 9999999999999999999999999999999 9999999998643
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---------C----CCCCCCCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~lSg 185 (287)
++.++|++|++..+ + .|++||+.++.. + ....+++.+.++.++. + ......+|||
T Consensus 412 ~~~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 412 LTNLRRHFALVSQNVHLF-N--DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred HHHHhcCeEEEcCCCccc-c--ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCH
Confidence 24599999997644 3 499999986421 1 1234455555555431 1 1234569999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.+|+++++||++..+|.+ +++.+.++.+ ..|++||+++.+.. |++ |++++.|+++
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999993 4444555432 24699999998765 554 8999999999
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHh
Confidence 8764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-31 Score=238.50 Aligned_cols=221 Identities=19% Similarity=0.230 Sum_probs=162.9
Q ss_pred CCccccCcccccccccchhhhhh----------cCccc-------eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQ----------RREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 111 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~----------~~~~~-------~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~ 111 (287)
...++++++++.|+.....+... .+..+ .+++|+++||+||||||||||+++|+|+++ |+
T Consensus 41 ~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~---~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA---RW 117 (312)
T ss_dssp TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH---TS
T ss_pred CCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc---cc
Confidence 34577788888886432221111 01111 378999999999999999999999999999 87
Q ss_pred CcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCC-CCCCCCCCcccCCc
Q 023126 112 KASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDP 190 (287)
Q Consensus 112 ~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG~~qr 190 (287)
.|. ..+++++||+++++ . |+.+|+.+. ..++.+.+.+.+.+.+.++.++... +.+++.|||||+||
T Consensus 118 ~G~---------~~v~~v~qd~~~~~--~-t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qR 184 (312)
T 3aez_A 118 DHH---------PRVDLVTTDGFLYP--N-AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDI 184 (312)
T ss_dssp TTC---------CCEEEEEGGGGBCC--H-HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEE
T ss_pred CCC---------CeEEEEecCccCCc--c-cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhh
Confidence 663 34899999987543 2 777776542 1235566677788888998888433 46788999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhcccc----------------CCChHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------------TGKPPD 254 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~----------------~G~~~e 254 (287)
+++|++++.++++||+||+++++|... ..+.++++..|||+|+.+.+.+|.+.|.+. .|.+++
T Consensus 185 v~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e 263 (312)
T 3aez_A 185 IPGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDS 263 (312)
T ss_dssp EEEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHH
T ss_pred hhhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHH
Confidence 999999999999999999999987311 246677788899999999988876654331 244444
Q ss_pred HH----HHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 255 VA----KWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 255 v~----~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
.+ ..+|....+|+++ ||.|.+.+||+|+++..
T Consensus 264 ~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 264 QAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred HHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 33 3445666788887 99999999999998653
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-31 Score=256.52 Aligned_cols=193 Identities=12% Similarity=0.083 Sum_probs=151.4
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..++++++++.|++ +.++ +++ +++++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l-----~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~ 411 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPAL-----RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYT 411 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSE-----EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBC
T ss_pred CcEEEEEEEEEcCCCCCccc-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccC
Confidence 46899999999974 5566 888 9999999999999999999999999999999 99999999986542
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------------CCCCCCCCCCc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDH 185 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSg 185 (287)
+.++|++|++..+ + .|++||+.++.. + ....+++.++++.++. .......+|||
T Consensus 412 ~~~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSg 483 (582)
T 3b60_A 412 LASLRNQVALVSQNVHLF-N--DTVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG 483 (582)
T ss_dssp HHHHHHTEEEECSSCCCC-S--SBHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCH
T ss_pred HHHHHhhCeEEccCCcCC-C--CCHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCH
Confidence 2499999997644 3 499999986421 1 1234455555554431 12345679999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.+|+++++||++..+|+ .+++.+.++.+ ..|++||+++.+.. |++ |++++.|+++
T Consensus 484 Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999 34444555432 24699999998755 444 8999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
++...
T Consensus 564 ~l~~~ 568 (582)
T 3b60_A 564 ELLAQ 568 (582)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 98653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-30 Score=231.36 Aligned_cols=183 Identities=11% Similarity=0.137 Sum_probs=128.0
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
.+.++++++++.+ +.++ +++ +.+++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++
T Consensus 38 ~~~l~~~~l~~~~--~~vl-----~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~ 102 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--TPVL-----KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RIS 102 (290)
T ss_dssp ------------C--CCSE-----EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEE
T ss_pred CceEEEEEEEEcC--ceEE-----EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEE
Confidence 3568889988853 4455 888 9999999999999999999999999999999 9999999987 389
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------c----CCCCCCCCCCcccCCchhhh
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------N----QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~----~~~~~~~~lSgG~~qrv~ia 194 (287)
|++|++.. ++ .|+++|+. .. ... .....+.++.++ . ..+.++.+||||||||+++|
T Consensus 103 ~v~Q~~~l-~~--~tv~enl~-~~---~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 103 FCSQNSWI-MP--GTIKENII-GV---SYD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp EECSSCCC-CS--SBHHHHHH-TT---CCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred EEeCCCcc-Cc--ccHHHHhh-Cc---ccc----hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 99999654 33 49999986 21 111 111222222211 1 12234579999999999999
Q ss_pred hhhccCccEEEEcCcccCCChhhHHHHHHh-h-----c-CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSM-F-----D-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe~~~~~l~~~-~-----~-~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|++.+|+++++|||+..||....+.+.+. . . .+|++|||++.+.. +++ |++++.|+++++..
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999999999999666666553 2 1 24689999998754 443 78888899888753
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-30 Score=252.81 Aligned_cols=192 Identities=16% Similarity=0.142 Sum_probs=149.3
Q ss_pred CccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 50 PVFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..++++++++.|+ ...++ +++ +++++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l-----~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~ 411 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVL-----SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVK 411 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSE-----EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBC
T ss_pred CcEEEEEEEEEcCCCCCcce-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCC
Confidence 4688999999995 35566 888 9999999999999999999999999999999 99999999997643
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHH---------hc----cCCCCCCCCCCc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LR----NQGSVYAPSFDH 185 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~---------l~----~~~~~~~~~lSg 185 (287)
+.++|++|++..+ + .|++||+.++ .+.. ..+++.+.++. +. .....+..+|||
T Consensus 412 ~~~~r~~i~~v~Q~~~lf-~--~tv~eni~~~-----~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLF-S--GTIKENLKWG-----REDA-TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp HHHHHHHEEEECSSCCCC-S--EEHHHHHTTT-----CSSC-CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred HHHHHhheEEECCCCcCc-C--ccHHHHHhcc-----CCCC-CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 3599999997654 3 4999998753 2211 22223333222 21 122456779999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.+|+++++||++..+|.+ +++.++++.. ..|++||+++.+.. |++ |++++.|+++
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999983 4444444432 24799999998765 554 8999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
|+.+.
T Consensus 563 el~~~ 567 (587)
T 3qf4_A 563 ELLEH 567 (587)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-30 Score=255.50 Aligned_cols=192 Identities=13% Similarity=0.139 Sum_probs=147.7
Q ss_pred CccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 50 PVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
..++++++++.|+. ..++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 353 ~~i~~~~v~~~y~~~~~~l-----~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~ 424 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVL-----KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKR 424 (598)
T ss_dssp CCEEEEEEECCSSSSSCSC-----CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEECCCCCccc-----cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCH
Confidence 35889999999974 4566 888 9999999999999999999999999999999 99999999986542
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCC----CCCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lSgG 186 (287)
+.++|++|++..+ + .|++||+.++. +.. ..+++.+.++..+ .+.+ ....+||||
T Consensus 425 ~~~r~~i~~v~Q~~~lf-~--~tv~eni~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 495 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILF-S--TTVKENLKYGN-----PGA-TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQG 495 (598)
T ss_dssp HHHHHHEEEECTTCCCC-S--SBHHHHHHSSS-----TTC-CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHH
T ss_pred HHHHhceEEEeCCCccc-c--ccHHHHHhcCC-----CCC-CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHH
Confidence 3599999997644 3 59999997531 111 1122333333222 1111 123589999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||+++|+|++.+|+++++||++..+|. .+.+.+.++.. ..|++||+++.+.. |++ |++++.|+++|
T Consensus 496 q~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999998 34444444433 34699999999876 554 89999999999
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
+...
T Consensus 576 l~~~ 579 (598)
T 3qf4_B 576 LIQK 579 (598)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=254.34 Aligned_cols=192 Identities=13% Similarity=0.102 Sum_probs=148.5
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..++++++++.|++ ..++ +++ +++++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l-----~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~ 409 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPIL-----KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFL 409 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSE-----EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSC
T ss_pred CeEEEEEEEEEcCCCCCcce-----eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCC
Confidence 45889999999974 4566 888 9999999999999999999999999999999 99999999986532
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cC----CCCCCCCCCc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDH 185 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~lSg 185 (287)
+.++|++|++..+ + .|++||+.++ .+.. ..+++.+.++..+ .+ ......+|||
T Consensus 410 ~~~~r~~i~~v~Q~~~l~-~--~tv~eni~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg 480 (578)
T 4a82_A 410 TGSLRNQIGLVQQDNILF-S--DTVKENILLG-----RPTA-TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480 (578)
T ss_dssp HHHHHHTEEEECSSCCCC-S--SBHHHHHGGG-----CSSC-CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred HHHHhhheEEEeCCCccC-c--ccHHHHHhcC-----CCCC-CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence 3599999997644 3 4999999764 2211 2233444443332 11 1234458999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.+|+++++||++..+|++ +.+.+.++.. ..|++||+++.+.. |++ |++++.|+++
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999983 3344444432 34699999998765 554 8999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
|+...
T Consensus 561 el~~~ 565 (578)
T 4a82_A 561 ELIAK 565 (578)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 98653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-29 Score=244.99 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=148.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|++. .+ +.+ +.+++||++||+||||||||||+|+|+|+++ |++|+|.+. ..+
T Consensus 354 ~~~~l~~~~l~~~~~~~-~l-----~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~-----~~i 419 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGSF-KL-----EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD-----LTV 419 (607)
T ss_dssp CCEEEEECCEEEECSSC-EE-----EECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC-----CCE
T ss_pred CceEEEEeceEEEecce-EE-----EecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe-----eEE
Confidence 45688999999999763 23 555 8899999999999999999999999999999 999999862 349
Q ss_pred EEEeCCCCCCCcccCCccccHHHH-HHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~-~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
+|++|+....+ .+|+.+++... ...+ ...+++.++++.++ ...++++.+||||||||++||++++.+|++
T Consensus 420 ~~v~Q~~~~~~--~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 420 AYKPQYIKAEY--EGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp EEECSSCCCCC--SSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred EEEecCccCCC--CCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999965433 47898877653 1111 12345667777777 445678889999999999999999999999
Q ss_pred EEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh------hccccCCChHHHHHH
Q 023126 204 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 258 (287)
Q Consensus 204 li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~------gr~v~~G~~~ev~~~ 258 (287)
|++|||+..||. .+++.|+++.. ..|++|||++++.. |++ |++.+.|+++++...
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 999999999999 34555555532 24699999999876 544 344567999887653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-29 Score=242.29 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=147.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|++. .+ +.+ +.+++||++||+||||||||||+|+|+|+++ |++|+|.+. ..+
T Consensus 284 ~~~~l~~~~l~~~~~~~-~l-----~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~-----~~i 349 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGSF-RL-----EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEWD-----LTV 349 (538)
T ss_dssp CCEEEEECCEEEEETTE-EE-----EECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCCC-----CCE
T ss_pred CCeEEEEeeEEEEECCE-EE-----EeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEC-----ceE
Confidence 45789999999988763 23 555 8899999999999999999999999999999 999999862 349
Q ss_pred EEEeCCCCCCCcccCCccccHHHH-HHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~-~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
+|++|+.... ..+|+.+++... ...+ ...+.+.++++.++ ...++++.+||||||||++||++++.+|++
T Consensus 350 ~~v~Q~~~~~--~~~tv~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 350 AYKPQYIKAD--YEGTVYELLSKIDASKL-----NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp EEECSSCCCC--CSSBHHHHHHHHHHHHH-----TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred EEEecCCcCC--CCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 9999996543 347887776543 1111 12345667777776 455778889999999999999999999999
Q ss_pred EEEcCcccCCCh----hhHHHHHHhh---c-CceEEEeCHHHHHH---HHh------hccccCCChHHHHHH
Q 023126 204 VIVDGNYLFLDG----GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 258 (287)
Q Consensus 204 li~d~~~lllDe----~~~~~l~~~~---~-~~i~vtHd~~~~~~---rv~------gr~v~~G~~~ev~~~ 258 (287)
|++|||+..||. .+++.++++. . .+|++|||++++.. |++ |++++.|+++++...
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 999999999998 3455555543 2 34699999999886 444 345567999887653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=235.55 Aligned_cols=175 Identities=17% Similarity=0.148 Sum_probs=137.1
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|++.. + ... +.+++||++||+||||||||||+++|+|+++ |++|+|.+++. .+
T Consensus 266 ~~~~l~~~~l~~~~~~~~-l-----~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~----~i 332 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDFQ-L-----VVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQ----IL 332 (538)
T ss_dssp CCEEEEECCEEEEETTEE-E-----EECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCC----CE
T ss_pred ccceEEEcceEEEECCEE-E-----EeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCe----ee
Confidence 456888999999988632 2 333 7899999999999999999999999999999 99999987653 48
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|+....+ .+|+.+|+...... . .......+.++++.++ ...++++.+|||||||||+||+|++.+|++|
T Consensus 333 ~~~~q~~~~~~--~~tv~~~l~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lL 407 (538)
T 3ozx_A 333 SYKPQRIFPNY--DGTVQQYLENASKD--A-LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLY 407 (538)
T ss_dssp EEECSSCCCCC--SSBHHHHHHHHCSS--T-TCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred Eeechhccccc--CCCHHHHHHHhhhh--c-cchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999865433 37899988763211 1 1112334566666666 4567888999999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++|||+..||. .+++.++++.+ .+|+||||++++..
T Consensus 408 lLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 408 VLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99999999998 45555665542 24699999999876
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-29 Score=261.51 Aligned_cols=194 Identities=14% Similarity=0.084 Sum_probs=154.5
Q ss_pred CccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
.-+++++++++|.++ .++ +++ ++|++||.+||+|+||||||||+++|.|+++ |++|+|.++|.+.+
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL-----~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i 1146 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEIL-----KGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTL 1146 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSE-----EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTB
T ss_pred CeEEEEEEEEeCCCCCCCccc-----cceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhC
Confidence 358899999999654 466 888 9999999999999999999999999999999 99999999997653
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCC
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFD 184 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lS 184 (287)
..++++|||++.+. -|+++|+.++.. +.....+.+.++++..+ .+.+..+ ..||
T Consensus 1147 ~~~~lR~~i~~V~Qdp~LF~---gTIreNI~~gld----~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS 1219 (1321)
T 4f4c_A 1147 NPEHTRSQIAIVSQEPTLFD---CSIAENIIYGLD----PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219 (1321)
T ss_dssp CHHHHHTTEEEECSSCCCCS---EEHHHHHSSSSC----TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC
T ss_pred CHHHHHhheEEECCCCEeeC---ccHHHHHhccCC----CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC
Confidence 45999999987654 499999875321 22334455556555443 2334333 4799
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|++.++++|++||++.-+|.+ +++.+++.+. ++|+|+|.++.+.. |++ ||+++.|++
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTH 1299 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999984 4444544443 24799999999877 665 999999999
Q ss_pred HHHHHH
Q 023126 253 PDVAKW 258 (287)
Q Consensus 253 ~ev~~~ 258 (287)
+|+++.
T Consensus 1300 ~eLl~~ 1305 (1321)
T 4f4c_A 1300 TQLMSE 1305 (1321)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998863
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-28 Score=256.32 Aligned_cols=193 Identities=13% Similarity=0.097 Sum_probs=148.5
Q ss_pred CccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
..++++++++.|+.+ .++ +++ +.+++||++||+||||||||||+++|.|+++ |++|+|.++|.+..
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l-----~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~ 1100 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVL-----QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQL 1100 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSB-----SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSS
T ss_pred CcEEEEEEEEECCCCCCCeee-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccC
Confidence 458899999999754 355 888 9999999999999999999999999999999 99999999997643
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCC----CCCCCCC
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFD 184 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lS 184 (287)
..++|++|++..+ . .|+++|+.++... .....+.+.+.++..+ .+.+ .....||
T Consensus 1101 ~~~~~r~~i~~v~Q~~~l~-~--~ti~eNi~~~~~~----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LS 1173 (1284)
T 3g5u_A 1101 NVQWLRAQLGIVSQEPILF-D--CSIAENIAYGDNS----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173 (1284)
T ss_dssp CHHHHTTSCEEEESSCCCC-S--SBHHHHHTCCCSS----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSC
T ss_pred CHHHHHhceEEECCCCccc-c--ccHHHHHhccCCC----CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccC
Confidence 4599999998543 3 6999998753211 1122333333333322 1112 2345899
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|++.+|++|++||++..+|.+ +++.+++... .+|+||||++++.. |++ |++++.|++
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTH 1253 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999983 4444444433 34799999999865 555 899999999
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 1254 ~~l~~ 1258 (1284)
T 3g5u_A 1254 QQLLA 1258 (1284)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99865
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=226.92 Aligned_cols=185 Identities=17% Similarity=0.193 Sum_probs=139.0
Q ss_pred Cccccccccc-chhhhhhcCcc-ceecCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 55 TRSLVQNKTS-LKVLCSQRREI-PVVEAR-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 55 ~~~~~~~~~~-~~~v~~~~~~~-~~i~~G-----eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
.++.+.|... ..+ +++ +.+.+| |++||+||||||||||+++|+|+++ |++|+.. ....++
T Consensus 350 ~~~~~~y~~~~~~l-----~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~-----~~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPSLKKTQ-----GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDI-----PKLNVS 416 (608)
T ss_dssp SSSCCEECCEEEEC-----SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCC-----CSCCEE
T ss_pred cceeEEecCccccc-----CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCc-----cCCcEE
Confidence 4555666542 233 666 888877 7899999999999999999999999 9999742 123489
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEE
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li 205 (287)
|++|+....+. .|+.+++... ..+ .......+.++++.++ ...++++.+|||||||||+||+|++.+|++|+
T Consensus 417 ~~~q~~~~~~~--~tv~e~~~~~--~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLl 490 (608)
T 3j16_B 417 MKPQKIAPKFP--GTVRQLFFKK--IRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYL 490 (608)
T ss_dssp EECSSCCCCCC--SBHHHHHHHH--CSS--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EecccccccCC--ccHHHHHHHH--hhc--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99998554333 5787765421 111 1123345567777777 45678899999999999999999999999999
Q ss_pred EcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh------hccccCCChHHHHHH
Q 023126 206 VDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~------gr~v~~G~~~ev~~~ 258 (287)
+|||+..||. .+++.++++.. ..+++|||++++.. |++ |++++.|+|+++...
T Consensus 491 LDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 491 IDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp ECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999998 45555655532 34699999999987 554 577889999998765
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-27 Score=249.19 Aligned_cols=191 Identities=13% Similarity=0.094 Sum_probs=147.9
Q ss_pred CccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
..++++++++.|+.+ .++ +++ +++++|+++||+||||||||||+++|.|+++ |++|+|.++|.+..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL-----~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~ 457 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQIL-----KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTI 457 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSE-----EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGS
T ss_pred CeEEEEEEEEEcCCCCCCcce-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhC
Confidence 358899999999753 466 888 9999999999999999999999999999999 99999999986532
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHH---------HHHhccC----CCCCCCCCC
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQ----GSVYAPSFD 184 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~----~~~~~~~lS 184 (287)
..++|++|++..+. .|++||+.++... ...+.+.+. ++.+..+ .......||
T Consensus 458 ~~~~~r~~i~~v~Q~~~l~~---~ti~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 528 (1284)
T 3g5u_A 458 NVRYLREIIGVVSQEPVLFA---TTIAENIRYGRED------VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS 528 (1284)
T ss_dssp CHHHHHHHEEEECSSCCCCS---SCHHHHHHHHCSS------CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSC
T ss_pred CHHHHHhheEEEcCCCccCC---ccHHHHHhcCCCC------CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccC
Confidence 34999999986443 4999999876321 112222222 2233222 234556899
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhhH----HHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~----~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|++.+|++|++||++.-||.+.. +.++.... .+|+|||+++.+.. +++ |++++.|++
T Consensus 529 gGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~ 608 (1284)
T 3g5u_A 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNH 608 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999998433 33333332 35799999999876 554 899999999
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 609 ~~l~~ 613 (1284)
T 3g5u_A 609 DELMR 613 (1284)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99765
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-27 Score=250.44 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=151.1
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
.-++++++++.|.. ..++ +++ +.+++|+.++|+||||||||||+++|.|+++ |++|+|.++|.+.+
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL-----~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~ 485 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPIL-----RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDI 485 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSE-----EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTS
T ss_pred CcEEEEEeeeeCCCCCCCcee-----eceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhc
Confidence 35788999999964 4566 888 9999999999999999999999999999999 99999999997654
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHH---------hccCCCC----CCCCCC
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSV----YAPSFD 184 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~~~----~~~~lS 184 (287)
..++|++|+++.+. -|++||+.++ .+. .+.+++.++++. +.++.+. .-..||
T Consensus 486 ~~~~lr~~i~~v~Q~~~Lf~---~TI~eNI~~g-----~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LS 556 (1321)
T 4f4c_A 486 NLEFLRKNVAVVSQEPALFN---CTIEENISLG-----KEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLS 556 (1321)
T ss_dssp CHHHHHHHEEEECSSCCCCS---EEHHHHHHTT-----CTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCC
T ss_pred cHHHHhhcccccCCcceeeC---CchhHHHhhh-----ccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCC
Confidence 35999999987554 5999999864 222 233444444433 3333333 334899
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|+..+|+++++|+++..+|.+ +.+.+.++.+ ++|+|+|.+..+.. +++ |++++.|+.
T Consensus 557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth 636 (1321)
T 4f4c_A 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDH 636 (1321)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCH
Confidence 99999999999999999999999999999983 4444555443 35799999998877 555 999999999
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+|++.
T Consensus 637 ~eL~~ 641 (1321)
T 4f4c_A 637 RALMA 641 (1321)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-27 Score=239.30 Aligned_cols=192 Identities=14% Similarity=0.099 Sum_probs=137.3
Q ss_pred CCCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc
Q 023126 48 AQPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 124 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~ 124 (287)
..++++++++++.|++ +.++ +++ +.+.+|+++||+||||||||||+|+|+|+++ |++|+|.+++..
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL-----~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~~--- 736 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQI-----TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENC--- 736 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSE-----EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTTC---
T ss_pred CCceEEEEeeEEEeCCCCceee-----eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCcc---
Confidence 4568999999999975 4566 888 9999999999999999999999999999999 999999987642
Q ss_pred eeEEEeCCCCCCC--cccCC------------------------------------------------------------
Q 023126 125 VATVLPMDGFHLY--LSQLD------------------------------------------------------------ 142 (287)
Q Consensus 125 ~i~~v~qd~~~~~--~~~lt------------------------------------------------------------ 142 (287)
.++|++|+.+... ....|
T Consensus 737 ~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~ 816 (986)
T 2iw3_A 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYE 816 (986)
T ss_dssp CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEE
T ss_pred ceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccch
Confidence 3888888642100 00001
Q ss_pred ------ccccHHHHH-----------------------------------HhcCCCCCchHHHHHHHHHHhccC----CC
Q 023126 143 ------AMEDPKEAH-----------------------------------ARRGAPWTFNPLLLLNCLKNLRNQ----GS 177 (287)
Q Consensus 143 ------v~e~i~~~~-----------------------------------~~~~~~~~~~~~~~~~~l~~l~~~----~~ 177 (287)
+.+|+.+.. ...+.......+++.+.|+.++.. .+
T Consensus 817 ~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~ 896 (986)
T 2iw3_A 817 YECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSH 896 (986)
T ss_dssp EEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred hhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcC
Confidence 111111100 001111222345677888888743 35
Q ss_pred CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh----cCceEEEeCHHHHHH---HHh----hcc
Q 023126 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL----KRH 246 (287)
Q Consensus 178 ~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~----~~~i~vtHd~~~~~~---rv~----gr~ 246 (287)
.++.+||||||||++||++++.+|++|++|||+..||......+.+.. ..+|++|||++++.. |++ |++
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~I 976 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRM 976 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBC
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 678899999999999999999999999999999999995444444433 235799999999865 433 666
Q ss_pred ccCC
Q 023126 247 ISTG 250 (287)
Q Consensus 247 v~~G 250 (287)
+..|
T Consensus 977 v~~G 980 (986)
T 2iw3_A 977 TPSG 980 (986)
T ss_dssp CC--
T ss_pred EEeC
Confidence 6655
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-26 Score=223.23 Aligned_cols=169 Identities=17% Similarity=0.090 Sum_probs=124.2
Q ss_pred Ccccccccccc-hhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc---------ccCCCCC--
Q 023126 55 TRSLVQNKTSL-KVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------FDSQVKP-- 122 (287)
Q Consensus 55 ~~~~~~~~~~~-~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i---------~~~~~~~-- 122 (287)
++++++|+... ++ +++-.+++||++||+||||||||||+|+|+|+++ |++|++ .+.|...
T Consensus 95 ~~ls~~yg~~~~~l-----~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYGVNAFVL-----YRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECSTTCCEE-----ECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECCCCeee-----CCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccchhhheeCCEehhh
Confidence 78899998652 34 4443689999999999999999999999999999 999996 3444321
Q ss_pred --------CceeEEEeCCCCCCCcc-cCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCch
Q 023126 123 --------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~-~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv 191 (287)
...+++++|.....+.. ..++.+++.. . ...+++.++++.++ ...++++.+|||||+||+
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~-----~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V-----DEVGKFEEVVKELELENVLDRELHQLSGGELQRV 237 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T-----CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHH
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h-----HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHH
Confidence 12367777763221110 1256665532 1 11234567777777 345778889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+||+|++.+|++|++|||+..||.. +++.|+++.. .+|++|||++++..
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHh
Confidence 9999999999999999999999983 5555555533 24699999998765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-26 Score=218.47 Aligned_cols=172 Identities=17% Similarity=0.098 Sum_probs=123.6
Q ss_pred ccc-Ccccccccccc-hhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc---------ccCCC
Q 023126 52 FGK-TRSLVQNKTSL-KVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------FDSQV 120 (287)
Q Consensus 52 ~~~-~~~~~~~~~~~-~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i---------~~~~~ 120 (287)
.++ +++++.|+... ++ +++-.+++||++||+||||||||||+|+|+|+++ |++|++ .+.|.
T Consensus 21 ~~~~~~ls~~yg~~~~~l-----~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVL-----YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECSTTCCEE-----ECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECCccccc-----cCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCc
Confidence 344 58999998752 33 4433689999999999999999999999999999 999995 34443
Q ss_pred CC----------CceeEEEeCCCCCCCcc-cCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCccc
Q 023126 121 KP----------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGV 187 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~-~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~ 187 (287)
.. ...+++++|.....+.. ..++.+++.. .. ..+++.++++.++ ...++++.+|||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----AD-----ETGKLEEVVKALELENVLEREIQHLSGGE 163 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH----HC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh----hh-----HHHHHHHHHHHcCCChhhhCChhhCCHHH
Confidence 21 12367777763322210 0245454431 11 1234567777777 44567888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|||++||+|++.+|++|++|||+..||.. +++.|+++.. .+|++|||++++..
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999984 5555555543 24699999998865
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-25 Score=191.73 Aligned_cols=195 Identities=21% Similarity=0.338 Sum_probs=130.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+++|+++||+||||||||||+++|+|++. .+.++ .....+++++|+.++ . .+++.+++.+..
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~--~~~~~i~~v~~d~~~--~-~l~~~~~~~~~~ 83 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE--QRQRKVVILSQDRFY--K-VLTAEQKAKALK 83 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC--GGGCSEEEEEGGGGB--C-CCCHHHHHHHHT
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc--ccCCceEEEeCCcCc--c-ccCHhHhhhhhc
Confidence 888 9999999999999999999999999999874 33332 123458899999632 2 378877776544
Q ss_pred HhcCC--CCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCce
Q 023126 152 ARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (287)
Q Consensus 152 ~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i 229 (287)
..+.. +...+.+.+.+.|+.+......+++.||+||+||+++ .+++.+++++++|++.++.++ .+.++.+.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~----~l~~~~~~~i 158 (245)
T 2jeo_A 84 GQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ----EIRDMFHLRL 158 (245)
T ss_dssp TCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH----HHHTTCSEEE
T ss_pred cCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH----HHHHhcCeEE
Confidence 33332 2334566677777777767778889999999999988 467778899999998887774 3455566666
Q ss_pred EEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchH-HHHhhcCCCccEEecc
Q 023126 230 FIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNA-ELIMKSKKNADLVIKS 284 (287)
Q Consensus 230 ~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~-~~i~~~~~~aD~i~~~ 284 (287)
+++.+.+....|.+.|.+..|...+.+...+.....+.. +++.|.+..||+|+++
T Consensus 159 ~v~th~~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 159 FVDTDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp EEECCHHHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred EEECCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 554443444444454434667666655555554444554 4999999999999954
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.7e-25 Score=213.81 Aligned_cols=174 Identities=16% Similarity=0.084 Sum_probs=116.7
Q ss_pred cccccccccc-hhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc-----------cCCCCCC
Q 023126 56 RSLVQNKTSL-KVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKPP 123 (287)
Q Consensus 56 ~~~~~~~~~~-~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~-----------~~~~~~~ 123 (287)
+++++|+... .+ .++..+++|+++||+||||||||||+|+|+|+++ |++|++. +.|....
T Consensus 82 ~~~~~Y~~~~~~l-----~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSANSFKL-----HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQ 153 (608)
T ss_dssp TEEEECSTTSCEE-----ECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHH
T ss_pred CeEEEECCCceee-----cCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhh
Confidence 5677776432 23 4445689999999999999999999999999999 9999982 3222110
Q ss_pred --------ce--eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCch
Q 023126 124 --------DV--ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 124 --------~~--i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv 191 (287)
.. ..+.+|.....+ .....+................+++.++++.++ ...++++.+|||||+||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv 230 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIP---RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRF 230 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHH---HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHH
T ss_pred hhhhHHHHHhhhhhhchhhhhhhh---hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHH
Confidence 00 112222111000 011111101111111111234467788888887 456788999999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
+||+|++.+|++|++|||+..||. .+++.++++... .|++|||++++..
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999999999999999999999998 355566665443 4699999999876
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-24 Score=185.95 Aligned_cols=182 Identities=32% Similarity=0.458 Sum_probs=138.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
.++|+++||+||||||||||+++|+|+++ |+ | ..++++++|++++.. +..+++... ...+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g----------~~~g~v~~d~~~~~~---~~~~~~~~~-~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G----------LPAEVVPMDGFHLDN---RLLEPRGLL-PRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T----------CCEEEEESGGGBCCH---HHHGGGTCG-GGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C----------CceEEEecCCCcCCH---HHHHHhccc-ccCCCC
Confidence 57899999999999999999999999998 65 4 127889999875542 111222100 112344
Q ss_pred CCchHHHHHHHHHHhccCCC------CCCCCCCcccCCchhhhhhhccCc-cEEEEcCcccCCChhhHHHHHHhhcCceE
Q 023126 158 WTFNPLLLLNCLKNLRNQGS------VYAPSFDHGVGDPVEDDILVGLQH-KVVIVDGNYLFLDGGVWKDVSSMFDEKWF 230 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~------~~~~~lSgG~~qrv~ia~al~~~a-~~li~d~~~lllDe~~~~~l~~~~~~~i~ 230 (287)
...+...+.+.+..+....+ .....+|+||+|+++. + ++++.|++++++||..|..+.+.++..++
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~-------~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~ 153 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGP-------ECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECT-------TCCEEEEEESSTTBCSTTGGGGGGTCSEEEE
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcC-------CCcEEEECCceeccCCchhHHHHHhcCEEEE
Confidence 45566666666666653322 1223568999999988 6 99999999999999888888888999999
Q ss_pred EEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEEecc
Q 023126 231 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKS 284 (287)
Q Consensus 231 vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~~ 284 (287)
++++.+...+|++.|....|.+.+.+.+++..+..++++|+.|.+.+||+|+++
T Consensus 154 vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 154 LEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWPQ 207 (208)
T ss_dssp ECCCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC-
T ss_pred EeCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEeeC
Confidence 999999988888888777787777777777766778889999999999999985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-24 Score=220.36 Aligned_cols=181 Identities=13% Similarity=0.048 Sum_probs=135.2
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC--CCceeEE
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--PPDVATV 128 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~--~~~~i~~ 128 (287)
+...++++.|+++.++ +++ +++++|+++||+||||||||||+|+|+| |++ .|.. ....++|
T Consensus 436 L~~~~ls~~yg~~~iL-----~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~~~~~~ 499 (986)
T 2iw3_A 436 LCNCEFSLAYGAKILL-----NKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEECRTVY 499 (986)
T ss_dssp EEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTTSCEEE
T ss_pred eEEeeEEEEECCEEeE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccceeEEE
Confidence 4444899999988877 898 9999999999999999999999999996 111 1111 1113678
Q ss_pred EeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCccEEE
Q 023126 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 129 v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~~li 205 (287)
++|+....+ +.+|+.+|+.+ ...+ . .+++.+.++.++. ..++++.+||||||||++||++++.+|++|+
T Consensus 500 v~q~~~~~~-~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 500 VEHDIDGTH-SDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp TTCCCCCCC-TTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred Ecccccccc-cCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 877642222 34788888864 1111 1 5677888888874 3467888999999999999999999999999
Q ss_pred EcCcccCCChh----hHHHHHHhhcC-ceEEEeCHHHHHH---HHh----hccc-cCCChHHHHH
Q 023126 206 VDGNYLFLDGG----VWKDVSSMFDE-KWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 206 ~d~~~lllDe~----~~~~l~~~~~~-~i~vtHd~~~~~~---rv~----gr~v-~~G~~~ev~~ 257 (287)
+|||+..||.. +++.|.+ ... .|++|||++++.. |++ |+++ ..|+++++..
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999994 4444444 222 4699999999876 444 7776 5788888754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-24 Score=213.46 Aligned_cols=182 Identities=18% Similarity=0.131 Sum_probs=106.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHH---------------------HHHHHHhcccCCCCccc-------ccCCCCC-
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKASS-------FDSQVKP- 122 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLl---------------------k~L~G~l~~~~p~~G~i-------~~~~~~~- 122 (287)
+++ ++|++|+++||+||||||||||+ +++.|+.. |+.|.+ .+++...
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC--
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCchhh
Confidence 888 99999999999999999999998 88888888 885543 3333221
Q ss_pred ---CceeEEEeCCCCC-----------------CCcccCCccccHHHHHHhc--CCCCCch------HHHHHHHHHHhcc
Q 023126 123 ---PDVATVLPMDGFH-----------------LYLSQLDAMEDPKEAHARR--GAPWTFN------PLLLLNCLKNLRN 174 (287)
Q Consensus 123 ---~~~i~~v~qd~~~-----------------~~~~~ltv~e~i~~~~~~~--~~~~~~~------~~~~~~~l~~l~~ 174 (287)
...+++++|.... .....+|+.+|+.+..... ....... .....+.++.++.
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL 191 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL 191 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 1223444443211 1112478899987642211 0000000 0111234666663
Q ss_pred C---CCCCCCCCCcccCCchhhhhhhccCcc--EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--
Q 023126 175 Q---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ-- 240 (287)
Q Consensus 175 ~---~~~~~~~lSgG~~qrv~ia~al~~~a~--~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~-- 240 (287)
. .++++.+||||||||++||+|++.+|+ +|++|||+..||+ .+++.++++.+ .+|+||||++++..
T Consensus 192 ~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d 271 (670)
T 3ux8_A 192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAAD 271 (670)
T ss_dssp TTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCS
T ss_pred chhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCC
Confidence 2 467888999999999999999999888 9999999999998 34444554432 34799999998655
Q ss_pred HHh----------hccccCCChHHHHH
Q 023126 241 RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 241 rv~----------gr~v~~G~~~ev~~ 257 (287)
|++ |++++.|+++++..
T Consensus 272 ~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 272 YLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred EEEEecccccccCCEEEEecCHHHHhc
Confidence 332 57778888888653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-24 Score=204.23 Aligned_cols=167 Identities=15% Similarity=0.002 Sum_probs=113.2
Q ss_pred ccccccc-cchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-----------ccCCCCCC-
Q 023126 57 SLVQNKT-SLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-----------FDSQVKPP- 123 (287)
Q Consensus 57 ~~~~~~~-~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i-----------~~~~~~~~- 123 (287)
.+.+||. .+.+ -++..+++||++||+||||||||||+|+|+|+++ |++|++ .+.|....
T Consensus 5 ~~~~~~~~~f~l-----~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i~~ 76 (538)
T 3ozx_A 5 VIHRYKVNGFKL-----FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEIYN 76 (538)
T ss_dssp EEEESSTTSCEE-----ECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTTHH
T ss_pred CceecCCCceee-----cCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeHHH
Confidence 4556663 2333 3346688999999999999999999999999999 999998 34443321
Q ss_pred ---------ceeEEEeCCCCCCCc-ccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCch
Q 023126 124 ---------DVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 124 ---------~~i~~v~qd~~~~~~-~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv 191 (287)
..+....|.....+. ...++.+++. ... ..+++.++++.++ ...++++.+|||||+||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~----~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 77 YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILT----KID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQRL 147 (538)
T ss_dssp HHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHH----HHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred HHHHHhhcccchhhccchhhhhhhhccCcHHHHhh----cch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 112222322111110 0013333221 111 1223456666666 456788899999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
+||+|++.+|++|++|||+..||. .+++.++++.+ .+|++|||++++..
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 999999999999999999999998 34555555533 24699999998876
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-26 Score=216.19 Aligned_cols=177 Identities=13% Similarity=-0.008 Sum_probs=125.1
Q ss_pred hhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-c-cccCCCCCCceeEEEeCCCCCC-CcccCCccc
Q 023126 70 SQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQVKPPDVATVLPMDGFHL-YLSQLDAME 145 (287)
Q Consensus 70 ~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G-~-i~~~~~~~~~~i~~v~qd~~~~-~~~~ltv~e 145 (287)
+.++++ +.+++|++++|+||||||||||+|+|+|++. |++| + |++++. .++.+++++|+...+ ..+.+++.+
T Consensus 126 ~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~-~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 126 FMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLD-PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECC-TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred ehhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCC-ccCCeeeeccchhhcccccccchhh
Confidence 333456 8899999999999999999999999999999 9999 8 988874 355688999985321 122368888
Q ss_pred cHHHHHHh-cCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhh--hccCccE----EEEcC-cccCCChhh
Q 023126 146 DPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQHKV----VIVDG-NYLFLDGGV 217 (287)
Q Consensus 146 ~i~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~a--l~~~a~~----li~d~-~~lllDe~~ 217 (287)
|+ ++... .+. ...+++.++++.++......+.+|||||+||+++|++ ++.++++ |++|+ ++..+|..
T Consensus 202 ni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~- 276 (460)
T 2npi_A 202 PT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN- 276 (460)
T ss_dssp TT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-
T ss_pred hh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-
Confidence 87 43221 111 1112233444445532222367999999999999999 9999999 99999 99999985
Q ss_pred HHHHHHhh----cCceEEEeCHH------HHHH---H-----Hh-----hccccCCChHHHH
Q 023126 218 WKDVSSMF----DEKWFIEVDLD------TAMQ---R-----VL-----KRHISTGKPPDVA 256 (287)
Q Consensus 218 ~~~l~~~~----~~~i~vtHd~~------~~~~---r-----v~-----gr~v~~G~~~ev~ 256 (287)
.+.+.++. ...++++||.+ ++.. | ++ |+++ .|+++++.
T Consensus 277 ~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 277 LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 33333332 34579999987 4433 5 44 5777 78877653
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-22 Score=168.48 Aligned_cols=178 Identities=24% Similarity=0.340 Sum_probs=131.5
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
.++|+++||+||||||||||+++|+|++. | .+++++||+++.....+++.++..+ .++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~--------------~i~~v~~d~~~~~~~~~~~~~~~~~---~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---E--------------RVALLPMDHYYKDLGHLPLEERLRV---NYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---G--------------GEEEEEGGGCBCCCTTSCHHHHHHS---CTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---C--------------CeEEEecCccccCcccccHHHhcCC---CCCCh
Confidence 46899999999999999999999999987 5 2789999987654444666555332 22334
Q ss_pred CCchHHHHHHHHHHhccC--CCCCCCCCCcccC----CchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEE
Q 023126 158 WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFI 231 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~~----qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~v 231 (287)
...+.+++.+.++.++.. ...+...+|+|++ ||+++ +++++.||+++++||. ...+++.++++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~-------~~~li~~~~ll~~de~----~~~~~d~~i~l 131 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRP-------APVVILEGILVLYPKE----LRDLMDLKVFV 131 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECC-------CSEEEEESTTTTSSHH----HHTTCSEEEEE
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCC-------CcEEEEeehhhccCHH----HHHhcCEEEEE
Confidence 455667777777777633 3345668999974 56666 8999999999999964 44566788999
Q ss_pred EeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 232 EVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 232 tHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
+.+.+....|.+.|.. ..|.+...+.+.+.....+.+. |+.|.+.+||+|+++..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 9999987777765543 5576666655555555566666 89999999999998753
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-23 Score=176.60 Aligned_cols=144 Identities=17% Similarity=0.076 Sum_probs=91.0
Q ss_pred cccccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC-----CCCCCceeEEEeCCCC
Q 023126 60 QNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-----QVKPPDVATVLPMDGF 134 (287)
Q Consensus 60 ~~~~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~-----~~~~~~~i~~v~qd~~ 134 (287)
.|+.+.++ ++ +++|++++|+||||||||||+++|+|+ + |++|+|... .......++|++|++
T Consensus 9 ~~g~~~~l-----~~---i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~v~q~~- 75 (208)
T 3b85_A 9 TLGQKHYV-----DA---IDTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGFLPGTL- 75 (208)
T ss_dssp SHHHHHHH-----HH---HHHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCSSCC---
T ss_pred CHhHHHHH-----Hh---ccCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEEecCCH-
Confidence 44555555 44 489999999999999999999999999 8 999998531 011234588888874
Q ss_pred CCCcccCCccccH-HHH----HHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCc
Q 023126 135 HLYLSQLDAMEDP-KEA----HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (287)
Q Consensus 135 ~~~~~~ltv~e~i-~~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~ 209 (287)
.+|+ .+. ...... ...+++.++++. + .||+||+++|++++.+|++|++|||
T Consensus 76 ---------~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-g-----------lGq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 76 ---------NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-G-----------IVEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp -------------CTTTHHHHHHHTTT---SCTTHHHHHHHT-T-----------SEEEEEGGGGTTCCBCSEEEEECSG
T ss_pred ---------HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-C-----------CchHHHHHHHHHHhcCCCEEEEeCC
Confidence 1222 111 111111 122345555543 1 1999999999999999999999999
Q ss_pred ccCCChhhHHHHHHhh-cCceEEEeCHHHHHH
Q 023126 210 YLFLDGGVWKDVSSMF-DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 210 ~lllDe~~~~~l~~~~-~~~i~vtHd~~~~~~ 240 (287)
+...-+.+++.+.++. ..++++|||++.+..
T Consensus 132 ts~~~~~l~~~l~~l~~g~tiivtHd~~~~~~ 163 (208)
T 3b85_A 132 QNTTPAQMKMFLTRLGFGSKMVVTGDITQVDL 163 (208)
T ss_dssp GGCCHHHHHHHHTTBCTTCEEEEEEC------
T ss_pred ccccHHHHHHHHHHhcCCCEEEEECCHHHHhC
Confidence 9982225556666651 123459999998765
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-22 Score=199.79 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCc---cEEEEcCcccCCCh----hhHHHHHHhhc---Cc
Q 023126 162 PLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EK 228 (287)
Q Consensus 162 ~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a---~~li~d~~~lllDe----~~~~~l~~~~~---~~ 228 (287)
.++..+.+..++. ..++++.+||||||||++||+|++.+| ++|++|||+..||+ .+++.++++.+ .+
T Consensus 520 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tv 599 (670)
T 3ux8_A 520 IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 599 (670)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 3455666777764 246778899999999999999998765 69999999999998 44555555543 24
Q ss_pred eEEEeCHHHHHH--HHh----------hccccCCChHHHH
Q 023126 229 WFIEVDLDTAMQ--RVL----------KRHISTGKPPDVA 256 (287)
Q Consensus 229 i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~ 256 (287)
|+||||++++.. |++ |++++.|+++++.
T Consensus 600 i~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 600 LVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 699999998754 432 6888999999874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-21 Score=173.67 Aligned_cols=187 Identities=24% Similarity=0.370 Sum_probs=139.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
++||+||||||||||+++|.+++.. +|++| .++++++|+++.....+. ++ .....++.+...+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~-----------~v~~i~~D~f~~~~~~l~--~~--~~~~~~g~P~~~D~ 157 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR-WPDHP-----------NVEVITTDGFLYSNAKLE--KQ--GLMKRKGFPESYDM 157 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT-STTCC-----------CEEEEEGGGGBCCHHHHH--HT--TCGGGTTSGGGBCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc-cCCCC-----------eEEEEeecccccchhhhh--hH--HHHhhccCcccccH
Confidence 9999999999999999999999861 12333 277899998865542211 10 01123567778888
Q ss_pred HHHHHHHHHhccCC-CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh------hHHHHHHhhcCceEEEeCH
Q 023126 163 LLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG------VWKDVSSMFDEKWFIEVDL 235 (287)
Q Consensus 163 ~~~~~~l~~l~~~~-~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~------~~~~l~~~~~~~i~vtHd~ 235 (287)
+.+.+.+..+..+. ....|.||.+..+|+..+...+.+++++|+|+.+++.++. -|..+.++++..|||+.+.
T Consensus 158 ~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~ 237 (321)
T 3tqc_A 158 PSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQA 237 (321)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCH
T ss_pred HHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCH
Confidence 99999998888666 6778899999999987655667789999999999999862 2234778889999999999
Q ss_pred HHHHHHHhhcccc----------C------CChHH----HHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 236 DTAMQRVLKRHIS----------T------GKPPD----VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 236 ~~~~~rv~gr~v~----------~------G~~~e----v~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
+....|++.|... . +.+.+ .+...|.....|+.+ ||+|++.+||+|+++-
T Consensus 238 d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g 308 (321)
T 3tqc_A 238 QVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKA 308 (321)
T ss_dssp HHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEEC
T ss_pred HHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecC
Confidence 9999877744321 1 33332 234556677788887 9999999999999864
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-20 Score=187.64 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCc---cEEEEcCcccCCCh----hhHHHHHHhhc---Cc
Q 023126 162 PLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EK 228 (287)
Q Consensus 162 ~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a---~~li~d~~~lllDe----~~~~~l~~~~~---~~ 228 (287)
..+..+.|+.++. ..++++.+|||||+||++||++++.++ +++|+|||+..||. .+++.|.++.+ .+
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3456677888874 346788899999999999999998754 79999999999998 44455555543 34
Q ss_pred eEEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 229 WFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 229 i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
|+||||++++.. |++ |++++.|+++++..
T Consensus 862 IvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 862 IVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 799999998866 543 68999999999864
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-20 Score=188.85 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccC---ccEEEEcCcccCCCh----hhHHHHHHhhc---Cc
Q 023126 162 PLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EK 228 (287)
Q Consensus 162 ~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~---a~~li~d~~~lllDe----~~~~~l~~~~~---~~ 228 (287)
.+++.++++.++.. .++++.+|||||+||++||++++.+ ++++|+|||+..||. .+++.+.++.+ .+
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 34567788888743 3678889999999999999999985 699999999999998 44455555543 24
Q ss_pred eEEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 229 WFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 229 i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
|++|||++++.. |++ |++++.|+++++..
T Consensus 787 IvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 787 IAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 689999999833 433 47778888888653
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-20 Score=168.48 Aligned_cols=163 Identities=31% Similarity=0.531 Sum_probs=133.1
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC-----------------------------
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----------------------------- 175 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~----------------------------- 175 (287)
.+.+++||+|+++...+.-.++.......+|.|.++|...+.+.++.|...
T Consensus 155 ~v~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 2ga8_A 155 IAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234 (359)
T ss_dssp SEEEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTC
T ss_pred eEEEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccC
Confidence 478899999998876665554444446678899999999888888777543
Q ss_pred CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc-----CceEEEeCHHHHHHHHhhccccCC
Q 023126 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEVDLDTAMQRVLKRHISTG 250 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~-----~~i~vtHd~~~~~~rv~gr~v~~G 250 (287)
....+|.|+.....++.-...+.+.++++|+|+.++++++..|..+.++++ ..|||+-+.++..+|++.|.+..|
T Consensus 235 ~~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~G 314 (359)
T 2ga8_A 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSG 314 (359)
T ss_dssp CCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTT
T ss_pred ceEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccC
Confidence 334677888888888877666666689999999999999778889999998 678999999999999999988888
Q ss_pred C--hHHHHHHHHHhcCcchHHHHhhcCCCccEEeccCCC
Q 023126 251 K--PPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 287 (287)
Q Consensus 251 ~--~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~~ 287 (287)
. ..+.+.+++..+..|+.+||+|++.+||+|+.+-++
T Consensus 315 l~~s~eea~~r~~~~d~pN~~~I~~~~~~ad~i~~~~~~ 353 (359)
T 2ga8_A 315 LVTTIAEGREKFRSNDLLNGRDIDNHLIKVDNIVHIRND 353 (359)
T ss_dssp SCSSHHHHHHHHHHCTTTSSHHHHHTBCCCTTEEEEECC
T ss_pred CCCCHHHHHHHHHhcCchhhHhHhhcCCCCCEEEEecCC
Confidence 7 677777777788999999999999999999976553
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-20 Score=168.03 Aligned_cols=214 Identities=18% Similarity=0.234 Sum_probs=136.5
Q ss_pred CCccccCcccccccccchhhhhhcCcc-cee-------------------cCCeEEEEECCCCCCHHHHHHHHHHHhccc
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVV-------------------EARHIVGLAGPPGAGKSTLAAEVVRRINKI 108 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i-------------------~~GeivgIiG~nGsGKSTLlk~L~G~l~~~ 108 (287)
..+++++++++.|+. ++ +++ +.+ .+|+++||+|+||||||||+++|+|++..
T Consensus 35 ~~~i~~~~v~~~y~~--~~-----~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~- 106 (308)
T 1sq5_A 35 NEDLSLEEVAEIYLP--LS-----RLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR- 106 (308)
T ss_dssp CTTCCHHHHHHTHHH--HH-----HHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-
T ss_pred ccccchHhHHHHHHH--HH-----HHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-
Confidence 457888999999952 22 333 333 89999999999999999999999998741
Q ss_pred CCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCC-CCCCCCCccc
Q 023126 109 WPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGV 187 (287)
Q Consensus 109 ~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~lSgG~ 187 (287)
+|++|++. ++++|++.... .....+.+. ..++.+...+.......+..+..... ...+.++...
T Consensus 107 ~~~~G~i~-----------vi~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~ 171 (308)
T 1sq5_A 107 WPEHRRVE-----------LITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLI 171 (308)
T ss_dssp STTCCCEE-----------EEEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTT
T ss_pred CCCCCeEE-----------EEecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccc
Confidence 25677643 45555543211 000100000 11222233344444444444443333 4556777777
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh------hHHHHHHhhcCceEEEeCHHHHHHHHhhcccc-------------
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG------VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS------------- 248 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~------~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~------------- 248 (287)
.+|+..+.....+++++|+|+++++.++. -...+.++++..|+|+.+.+...+|++.|...
T Consensus 172 ~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~ 251 (308)
T 1sq5_A 172 YDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYF 251 (308)
T ss_dssp TEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTT
T ss_pred cCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhh
Confidence 77776554555668999999999998720 00135667888899999999988877755421
Q ss_pred ---CCChHHH----HHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 249 ---TGKPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 249 ---~G~~~ev----~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
.|.+++. +..+|....+|+++ |+.|.+.+||+||++.
T Consensus 252 ~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~ 296 (308)
T 1sq5_A 252 HNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKS 296 (308)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred hcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeC
Confidence 2555553 33445555677786 9999999999999875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-20 Score=185.36 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccC---ccEEEEcCcccCCCh----hhHHHHHHhhc---Cce
Q 023126 163 LLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKW 229 (287)
Q Consensus 163 ~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~---a~~li~d~~~lllDe----~~~~~l~~~~~---~~i 229 (287)
.+..+.++.++. ..++++.+|||||+||++||++++.+ ++++|+|||+..||. .+++.|.++.+ .+|
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 345677788874 34678889999999999999999976 499999999999998 45555555543 246
Q ss_pred EEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 230 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 230 ~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
++|||++++.. |++ |++++.|+++++..
T Consensus 903 visHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 903 VIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp EECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 99999998743 433 57788888888753
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-19 Score=161.65 Aligned_cols=193 Identities=18% Similarity=0.193 Sum_probs=128.8
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH------
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH------ 151 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~------ 151 (287)
-.++.++||+|++|||||||++.|.+++. +. |. ....+.+++||+++++. +..+|+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCCh---HHHHHHhccccccchh
Confidence 45688999999999999999999999997 43 10 01124555999887643 5556665541
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCC----------CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhh----
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQG----------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV---- 217 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~---- 217 (287)
...+.+.+.+.+.+.+.+..+..+. ..+-..+||||+||++++.+...+++++|+||+++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~~~~~ 173 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIE 173 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCCSCTT
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccchhhh
Confidence 2234678888888889998887552 12334789999999998743323899999999999999742
Q ss_pred ------------HHH-------HHHhhcCc---eEEEe-CHHHHHHHHhhc--c-c-cC--CChHHHHHHHHHhcCcchH
Q 023126 218 ------------WKD-------VSSMFDEK---WFIEV-DLDTAMQRVLKR--H-I-ST--GKPPDVAKWRIEYNDRPNA 268 (287)
Q Consensus 218 ------------~~~-------l~~~~~~~---i~vtH-d~~~~~~rv~gr--~-v-~~--G~~~ev~~~~~~~~~~~~~ 268 (287)
.+. +.++++.. ||+.- +.+.+.+|.+.| . + +. |...|.+.++. ...+|++
T Consensus 174 ~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~-~~~~p~y 252 (290)
T 1odf_A 174 NNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFV-DRYMPSY 252 (290)
T ss_dssp TCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHH-HTTHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH-HHhcchH
Confidence 222 23345666 99988 555555534533 2 2 23 76666665544 4567776
Q ss_pred H-HHhhc------CCCccEEeccC
Q 023126 269 E-LIMKS------KKNADLVIKSI 285 (287)
Q Consensus 269 ~-~i~~~------~~~aD~i~~~~ 285 (287)
+ |+.|. ..+||+|+..-
T Consensus 253 ~~~~~~~~~~~~~~~~adlvl~~~ 276 (290)
T 1odf_A 253 KLYLNDFVRSESLGSIATLTLGID 276 (290)
T ss_dssp HHHHHHHHHHTCSSSSEEEEEEEC
T ss_pred HHHhHHHHHhccCCCCCCEEEEEC
Confidence 5 55442 23899998643
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-19 Score=149.74 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=81.6
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+.+++|++++|+||||||||||++++.+-.. ..++.. ..++++|++...... -++++.+
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~---~~~~d~---------~~g~~~~~~~~~~~~-~~~~~~~-------- 62 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTE---VISSDF---------CRGLMSDDENDQTVT-GAAFDVL-------- 62 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSCGGG---EEEHHH---------HHHHHCSSTTCGGGH-HHHHHHH--------
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHccCCe---EEccHH---------HHHHhcCcccchhhH-HHHHHHH--------
Confidence 7899999999999999999999995332111 000000 012233332210000 0000000
Q ss_pred CCCCchHHHHHHHHHHhcc-CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----------------hH
Q 023126 156 APWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----------------VW 218 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~-~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----------------~~ 218 (287)
.......+ ..+. .........|+||+||+++|++++.+++++++|+|+..||+. ..
T Consensus 63 ------~~~~~~~~-~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~ 135 (171)
T 4gp7_A 63 ------HYIVSKRL-QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHT 135 (171)
T ss_dssp ------HHHHHHHH-HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHH
T ss_pred ------HHHHHHHH-hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHH
Confidence 00111111 2221 111233456999999999999999999999999999999975 44
Q ss_pred HHHHHhhc-------CceEEEeCHHHHHH
Q 023126 219 KDVSSMFD-------EKWFIEVDLDTAMQ 240 (287)
Q Consensus 219 ~~l~~~~~-------~~i~vtHd~~~~~~ 240 (287)
+.+.+... ..|++|||++++..
T Consensus 136 ~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 136 QQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 45444422 24699999999865
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-20 Score=162.53 Aligned_cols=142 Identities=13% Similarity=0.057 Sum_probs=86.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
.++|+||||||||||+++|+|++. |++|++.++|... ...+++++|+..... .+|+.+|+.++.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~--~ltv~d~~~~g~~~~~-- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM--KLTVIDTPGFGDQINN-- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CC--EEEEECCCC--CCSBC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCCcC--CceEEechhhhhhccc--
Confidence 589999999999999999999999 9999998877532 356899999865433 3899999987643222
Q ss_pred CCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc--CceEEEeCH
Q 023126 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--EKWFIEVDL 235 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~--~~i~vtHd~ 235 (287)
....+.+.+.+. ....+..+.+|||||+||+++|++++ .++++||+.-.+|+.-.+.++.+.. ..|++.|..
T Consensus 77 -~~~~~~i~~~~~--~~~~~~~~~~LS~G~~qrv~iaRal~---~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~ 150 (270)
T 3sop_A 77 -ENCWEPIEKYIN--EQYEKFLKEEVNIARKKRIPDTRVHC---CLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKA 150 (270)
T ss_dssp -TTCSHHHHHHHH--HHHHHHHHHHSCTTCCSSCCCCSCCE---EEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTG
T ss_pred -HHHHHHHHHHHH--HHHHhhhHHhcCcccchhhhhheeee---eeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEecc
Confidence 222233333332 11223345589999999999999874 5899999988888844444444433 345677666
Q ss_pred HH
Q 023126 236 DT 237 (287)
Q Consensus 236 ~~ 237 (287)
+.
T Consensus 151 D~ 152 (270)
T 3sop_A 151 DT 152 (270)
T ss_dssp GG
T ss_pred cc
Confidence 53
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-21 Score=170.92 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=108.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEE
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 129 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v 129 (287)
.++++++++.|+ ..++ +++ +.+++|++++|+||||||||||+++|+|++ +|+| ++++
T Consensus 101 ~i~~~~vs~~y~-~~vL-----~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I----------~~~v 158 (305)
T 2v9p_A 101 FFNYQNIELITF-INAL-----KLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV----------LSFA 158 (305)
T ss_dssp HHHHTTCCHHHH-HHHH-----HHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE----------ECGG
T ss_pred eEEEEEEEEEcC-hhhh-----ccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE----------EEEe
Confidence 478889999997 4455 788 999999999999999999999999999997 3655 3456
Q ss_pred eCCCCCCCcccCCccc-cHHHHHHhcCCCCCchHHHHHHHHHH-hccCCCCCCCCCCcccCCchhhhhhhccCccEEEEc
Q 023126 130 PMDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (287)
Q Consensus 130 ~qd~~~~~~~~ltv~e-~i~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d 207 (287)
+|++..+. .|+.+ |+.+.. .. .+.+.+.++. +....+ ...|||||||| |++++.+|++||
T Consensus 159 ~q~~~lf~---~ti~~~ni~~~~------~~--~~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl-- 220 (305)
T 2v9p_A 159 NHKSHFWL---ASLADTRAALVD------DA--THACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV-- 220 (305)
T ss_dssp GTTSGGGG---GGGTTCSCEEEE------EE--CHHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE--
T ss_pred cCcccccc---ccHHHHhhccCc------cc--cHHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE--
Confidence 77754333 35665 665421 01 1234455555 433333 67999999999 899999999999
Q ss_pred CcccCCChhhHHHHHHhhcCceEEEeCHHHHHH--HHh---hccccCCChHHH
Q 023126 208 GNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ--RVL---KRHISTGKPPDV 255 (287)
Q Consensus 208 ~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~--rv~---gr~v~~G~~~ev 255 (287)
+..||....+.+..+ +|+++.+.. +++ |++++.|+++++
T Consensus 221 --Ts~LD~~~~~~i~~l-------tH~~~~~~~aD~ivl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 --TSNIDVQAEDRYLYL-------HSRVQTFRFEQPCTDESGEQPFNITDADW 264 (305)
T ss_dssp --EESSCSTTCGGGGGG-------TTTEEEEECCCCCCCC---CCCCCCHHHH
T ss_pred --ECCCCHHHHHHHHHH-------hCCHHHHHhCCEEEEeCCEEEEeCCHHHH
Confidence 888997433333322 555543322 223 888999999988
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-19 Score=166.27 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=47.2
Q ss_pred CCcccCCchhhhhhhccCc--cEEEEcCcccCCCh----hhHHHHHHhh--cCceEEEeCHHHHH
Q 023126 183 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAM 239 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a--~~li~d~~~lllDe----~~~~~l~~~~--~~~i~vtHd~~~~~ 239 (287)
|||||+||+++|++++.++ ++||+|+++..||. .+.+.|+++. ..+|+||||++++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~ 360 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA 360 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh
Confidence 6999999999999999999 99999999999998 3445555554 23578999997763
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-19 Score=170.04 Aligned_cols=135 Identities=11% Similarity=0.045 Sum_probs=97.7
Q ss_pred Ccc-ceecCCe--------------------EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeC
Q 023126 73 REI-PVVEARH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 131 (287)
Q Consensus 73 ~~~-~~i~~Ge--------------------ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~q 131 (287)
+++ +.+++|+ ++||+||||||||||+|+|+|+++ |++|+|.+++....+ .++++|
T Consensus 40 ~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t~-~~~v~q 115 (413)
T 1tq4_A 40 NLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVTM-ERHPYK 115 (413)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC----C-CCEEEE
T ss_pred hhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeecce-eEEecc
Confidence 677 8899999 999999999999999999999999 999999988765432 367888
Q ss_pred CCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCC-CCCCCCCCcc--cCCchhhhhhhcc---------
Q 023126 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG--VGDPVEDDILVGL--------- 199 (287)
Q Consensus 132 d~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG--~~qrv~ia~al~~--------- 199 (287)
++. . +.+++.+++.+.. + ..++.+.++.++... +..+ .||+| |+||+.++++++.
T Consensus 116 ~~~-~--~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~lV~ 182 (413)
T 1tq4_A 116 HPN-I--PNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFYFVR 182 (413)
T ss_dssp CSS-C--TTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccc-c--CCeeehHhhcccc-----h----HHHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence 743 2 2478888875421 1 123456666666322 3333 39999 9999999999988
Q ss_pred -CccEEEEcCcccCCCh----hhHHHHHHh
Q 023126 200 -QHKVVIVDGNYLFLDG----GVWKDVSSM 224 (287)
Q Consensus 200 -~a~~li~d~~~lllDe----~~~~~l~~~ 224 (287)
+++++++||++..+|. .+++.++++
T Consensus 183 tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp CCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred ecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 6777777777777776 445555554
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-18 Score=142.22 Aligned_cols=131 Identities=12% Similarity=0.032 Sum_probs=86.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC--CCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 160 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~--~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~ 160 (287)
+++|+||||||||||+++|+|++.- .-.|.....-. .....++|++|+. ++.+++. ...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~~~---~~~~~~~-- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITT--------EGKKKIF---SSKFFTS-- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------CCEEEEEET--------TCCEEEE---EETTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEhhhhccccccceeEEEeecC--------cHHHHHH---HhhcCCc--
Confidence 6899999999999999999999851 11221100000 1234578888764 2223321 0001100
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhh-----hccCccEEEEcC--cccCCChhhHHHHHHhhc---C-ce
Q 023126 161 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFD---E-KW 229 (287)
Q Consensus 161 ~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~a-----l~~~a~~li~d~--~~lllDe~~~~~l~~~~~---~-~i 229 (287)
....+.++..|||||+||+++|++ ++.+++++++|| ++..+|+...+.+.+... . .+
T Consensus 67 ------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i 134 (178)
T 1ye8_A 67 ------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVV 134 (178)
T ss_dssp ------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEE
T ss_pred ------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEE
Confidence 023455677999999999999996 899999999999 999999977666666653 2 46
Q ss_pred EEE---eCHHHHHH
Q 023126 230 FIE---VDLDTAMQ 240 (287)
Q Consensus 230 ~vt---Hd~~~~~~ 240 (287)
+++ ||.+.+..
T Consensus 135 ~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 135 ATIPIRDVHPLVKE 148 (178)
T ss_dssp EECCSSCCSHHHHH
T ss_pred EEEccCCCchHHHH
Confidence 777 47777765
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-19 Score=150.82 Aligned_cols=67 Identities=22% Similarity=0.166 Sum_probs=41.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC----CCceeEEEeCCCCCCCcccCCccccH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVATVLPMDGFHLYLSQLDAMEDP 147 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~----~~~~i~~v~qd~~~~~~~~ltv~e~i 147 (287)
..+++|++++|+||||||||||+++|+|+++ ...+.+...+.. ..+.++|++|+...+. .+++.+++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~--~~~~~~~l 85 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQ--QLIDQGEL 85 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST---TCEECCCEESSCCCTTCCBTTTBEECCHHHHH--HHHHTTCE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ceEEcccccccCCcccccCCCeeEecCHHHHH--HHHhcCCc
Confidence 6899999999999999999999999999985 322222111110 1234788898854322 35555554
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-19 Score=168.24 Aligned_cols=174 Identities=7% Similarity=-0.097 Sum_probs=116.8
Q ss_pred CccccCccccccc-ccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC-------
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 121 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~------- 121 (287)
++++.+++++.|+ +..++ ++++.+.+|++++|+||||||||||+++|+|+.+ |+.|.+.+.|..
T Consensus 130 ~~l~~~~v~~~~~tg~~vl-----d~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAI-----NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHH-----HHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCCCceEE-----eeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHH
Confidence 5789999999997 45566 7779999999999999999999999999999999 999998887762
Q ss_pred ---------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchh
Q 023126 122 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 122 ---------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ 192 (287)
..+.+++++|++.... ..+++.+|+.+....+.... .+ +.... ..+..||+|| ||++
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~-~~~~v~~~~~~~ae~~~~~~-~~----------v~~~l-d~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPL-LRMQGAAYATRIAEDFRDRG-QH----------VLLIM-DSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHH-HHHHHHHHHHHHHHHHHTTT-CE----------EEEEE-ECHHHHHHHH-HHHH
T ss_pred HHhhccccccCceEEEEECCCCCHH-HHHHHHHHHHHHHHHHHhCC-CC----------HHHHH-HhHHHHHHHH-HHHH
Confidence 1234899999644332 24677787776544332110 00 00000 1245789999 9999
Q ss_pred hhhhhccCccEEEEcCcccCCChhh----HHHHHHhhc-----C-------ceEEEeCHHHHHH-HHh----hccccCCC
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD-----E-------KWFIEVDLDTAMQ-RVL----KRHISTGK 251 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~~----~~~l~~~~~-----~-------~i~vtHd~~~~~~-rv~----gr~v~~G~ 251 (287)
+| +.++++ +..+|... .+.+.++.. . +++++||++.... +++ |+++..|.
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCC
Confidence 96 333433 78899843 344444433 1 2367899973222 333 66666665
Q ss_pred hHH
Q 023126 252 PPD 254 (287)
Q Consensus 252 ~~e 254 (287)
+.+
T Consensus 339 ~~~ 341 (438)
T 2dpy_A 339 LAE 341 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-18 Score=150.04 Aligned_cols=151 Identities=13% Similarity=0.003 Sum_probs=86.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC---------CCceeEEEeCCCCCCCcccCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------PPDVATVLPMDGFHLYLSQLD 142 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~---------~~~~i~~v~qd~~~~~~~~lt 142 (287)
+++ +.+++|++++|+||||||||||+++|+|++ | |++.+ +.. ..+.++|++|+...+.. ++
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~ 84 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED--KL 84 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH--HH
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH--hh
Confidence 777 999999999999999999999999999976 6 88776 321 12346777877432211 11
Q ss_pred -ccccHH---HHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh---
Q 023126 143 -AMEDPK---EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--- 215 (287)
Q Consensus 143 -v~e~i~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe--- 215 (287)
..+++. +....++. ....+.++++..... .....+||||+||++++ ....+++++.+|+++.|||
T Consensus 85 ~~~~~l~~~~~~~~~~g~----~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~--~~~~~~~ll~~~~~~~Lde~~~ 156 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGT----LKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTH--IKNALYIFIKPPSTDVLLSRLL 156 (218)
T ss_dssp HTTCEEEEEEETTEEEEE----EHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSS--CCSCEEEEEECSCHHHHHHHHH
T ss_pred hccchhhhhhcccccCCC----cHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhc--CCCcEEEEEeCcCHHHHHHHHH
Confidence 111111 11111221 123455555543311 11147899999999884 1223677777788888887
Q ss_pred --------hhHHHHHHhh----------cCceEEEeCHHHHHH
Q 023126 216 --------GVWKDVSSMF----------DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 --------~~~~~l~~~~----------~~~i~vtHd~~~~~~ 240 (287)
.+.+.+.... -..|+++||++++..
T Consensus 157 ~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~ 199 (218)
T 1z6g_A 157 TRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQ 199 (218)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHH
Confidence 2333333221 124789999998877
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-18 Score=152.39 Aligned_cols=143 Identities=9% Similarity=0.054 Sum_probs=99.9
Q ss_pred cc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc--------------eeEEEeCCCC-CCC
Q 023126 74 EI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGF-HLY 137 (287)
Q Consensus 74 ~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~--------------~i~~v~qd~~-~~~ 137 (287)
.+ +.+++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+ .++|++|+.. ..
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~- 167 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK- 167 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC-
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC-
Confidence 44 6789999999999999999999999999999 999999887765421 3799999854 32
Q ss_pred cccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc--EEEEcCcccCC
Q 023126 138 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL 213 (287)
Q Consensus 138 ~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~--~li~d~~~lll 213 (287)
+.+++++++.+.... +. + ..+++.++. ..+.++.+|| +||++++++++..|+ +|++| ++..+
T Consensus 168 -~~~~v~e~l~~~~~~-~~----d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 168 -AATVLSKAVKRGKEE-GY----D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp -HHHHHHHHHHHHHHT-TC----S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred -HHHHHHHHHHHHHHc-CC----c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 236888888765321 11 1 011222221 1223445788 899999999999999 99999 99999
Q ss_pred Chh-hHHHHHHhhc-CceEEEeC
Q 023126 214 DGG-VWKDVSSMFD-EKWFIEVD 234 (287)
Q Consensus 214 De~-~~~~l~~~~~-~~i~vtHd 234 (287)
|.. ..+.+.+... ..+++||.
T Consensus 234 D~~~~~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 234 NMLPQAREFNEVVGITGLILTKL 256 (302)
T ss_dssp GGHHHHHHHHHHTCCCEEEEECC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCC
Confidence 963 2223322222 35799993
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-16 Score=142.98 Aligned_cols=136 Identities=7% Similarity=-0.037 Sum_probs=94.1
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+++|++++|+||||||||||+++|+|+++ |++|.|.+++... +.... ..+++.+
T Consensus 162 ~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e-----------~~~~~----~~~~i~~-- 221 (330)
T 2pt7_A 162 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEE-----------IVFKH----HKNYTQL-- 221 (330)
T ss_dssp HHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCC-----------CCCSS----CSSEEEE--
T ss_pred hhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeec-----------ccccc----chhEEEE--
Confidence 667 8899999999999999999999999999999 9999888766421 00000 0000000
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc---Cc
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD---EK 228 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~---~~ 228 (287)
. . .|||+||+++++++..+|+++++||+.. .+.++.+..+.. .+
T Consensus 222 --~--~--------------------------ggg~~~r~~la~aL~~~p~ilildE~~~---~e~~~~l~~~~~g~~tv 268 (330)
T 2pt7_A 222 --F--F--------------------------GGNITSADCLKSCLRMRPDRIILGELRS---SEAYDFYNVLCSGHKGT 268 (330)
T ss_dssp --E--C--------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS---THHHHHHHHHHTTCCCE
T ss_pred --E--e--------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh---HHHHHHHHHHhcCCCEE
Confidence 0 0 0899999999999999999999998875 345666666543 24
Q ss_pred eEEEeCHHHHHH--HHh----hccccCCChHHHHHHHHH
Q 023126 229 WFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 229 i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~~~~~ 261 (287)
++++|+.+.... |++ |.....+.+.+.+.....
T Consensus 269 i~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~ 307 (330)
T 2pt7_A 269 LTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFK 307 (330)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHH
T ss_pred EEEEcccHHHHHhhhheehhcCCcccCCCCHHHHHHHHH
Confidence 689999984433 554 333334555666555544
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-16 Score=145.42 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=50.4
Q ss_pred CCCCCCCCcccCCchhhhhhhc------cCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHH
Q 023126 177 SVYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 177 ~~~~~~lSgG~~qrv~ia~al~------~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
++++.+|||||+||++||++++ .+|+++++|||+..||+. +++.+.++.+ .+|++|||++..
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~ 348 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS 348 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH
Confidence 3567799999999999999998 699999999999999983 4445555543 246899999984
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-17 Score=150.17 Aligned_cols=141 Identities=9% Similarity=0.024 Sum_probs=99.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------------ceeEEEeCCCC-CCCccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGF-HLYLSQ 140 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------------~~i~~v~qd~~-~~~~~~ 140 (287)
+.+++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+.. ..+++++|+.. ..+ .
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p--~ 226 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA--A 226 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH--H
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh--h
Confidence 6788999999999999999999999999999 99999988776542 13789998854 322 3
Q ss_pred CCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc--EEEEcCcccCCChh
Q 023126 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGG 216 (287)
Q Consensus 141 ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~--~li~d~~~lllDe~ 216 (287)
.++++++.+.... +. +. .+++.++. ..+..+.+|| +||++++++++..|+ +|++| ++..+|..
T Consensus 227 ~tv~e~l~~~~~~-~~----d~----~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~ 293 (359)
T 2og2_A 227 TVLSKAVKRGKEE-GY----DV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 293 (359)
T ss_dssp HHHHHHHHHHHHT-TC----SE----EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH
T ss_pred hhHHHHHHHHHhC-CC----HH----HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH
Confidence 6888888765421 11 10 11222221 1123444688 899999999999999 99999 89999962
Q ss_pred -hHHHHHHhhc-CceEEEeC
Q 023126 217 -VWKDVSSMFD-EKWFIEVD 234 (287)
Q Consensus 217 -~~~~l~~~~~-~~i~vtHd 234 (287)
..+.+.+... .++++||.
T Consensus 294 ~~~~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 294 PQAREFNEVVGITGLILTKL 313 (359)
T ss_dssp HHHHHHHHHTCCCEEEEESC
T ss_pred HHHHHHHHhcCCeEEEEecC
Confidence 2222322222 35799994
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-16 Score=146.92 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=55.4
Q ss_pred CccccCccccccc-ccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
++++.+++++.|+ +..++ ++++.+.+|+++||+||||||||||+++|+|++. |+.|.+.+.|.
T Consensus 44 ~~i~~~~l~~~~~tg~~al-----d~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAI-----DGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGE 107 (347)
T ss_dssp CSTTCCCCCSEECCSCHHH-----HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESC
T ss_pred CCeeecccceecCCCCEEE-----EeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEecc
Confidence 5789999999998 45566 7889999999999999999999999999999999 99998765553
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-16 Score=140.06 Aligned_cols=62 Identities=11% Similarity=-0.064 Sum_probs=48.3
Q ss_pred CCCCCCCCcccCCchhhhhhhc----cCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHH
Q 023126 177 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTA 238 (287)
Q Consensus 177 ~~~~~~lSgG~~qrv~ia~al~----~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~ 238 (287)
+.++..||+||+||+++|++++ .+++++++|+++..||+. +++.++++.. ..|++||+.+..
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~ 285 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVM 285 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 4456799999999999999986 578999999999999993 4444555432 347999997543
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-15 Score=120.07 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=66.8
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce---eE
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV---AT 127 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~---i~ 127 (287)
+...++++.|+.+.++ +++ +.+++|++++|+||||||||||+|+|+|++ |++|+|.+++...... ..
T Consensus 8 ~~~~~~~~~~g~~~~l-----~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~~i~~~~~~~~ 78 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAE-----ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTYTLVEEYNIAG 78 (158)
T ss_dssp ECSHHHHHHHHHHHHH-----HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTTTCEEEEEETT
T ss_pred cCCHHHHHHHHHHHHH-----hccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCEeeeeeccCCC
Confidence 3445678888877777 887 999999999999999999999999999998 7899999887654211 12
Q ss_pred EEeCCCCCCCcccCCccccHHH
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKE 149 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~ 149 (287)
+++|+. .++ .+|+.+++.+
T Consensus 79 ~~~q~~-~l~--~ltv~e~l~~ 97 (158)
T 1htw_A 79 KMIYHF-DLY--RLADPEELEF 97 (158)
T ss_dssp EEEEEE-ECT--TCSCTTHHHH
T ss_pred cceecc-ccc--cCCcHHHHHH
Confidence 567763 333 3899888854
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-15 Score=126.63 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=83.5
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCcccccCCCCCC----ceeEEEeCCCCCCCcccCCc----cc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKPP----DVATVLPMDGFHLYLSQLDA----ME 145 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p--~~G~i~~~~~~~~----~~i~~v~qd~~~~~~~~ltv----~e 145 (287)
...++|++++|+||||||||||+++|+|+++ | ..|.+.+.+.... ..++|++|+...+. .+++ .|
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~---p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~--~~~~~~~f~E 85 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK--EMISRDAFLE 85 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC---TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH--HHHHTTCEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC---CCceEEEEEecCCCCCcccccCceEEECCHHHHH--HHHhcCHHHH
Confidence 4588999999999999999999999999997 7 5787776554321 23677777643221 1333 34
Q ss_pred cHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh
Q 023126 146 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (287)
Q Consensus 146 ~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~ 225 (287)
++.+....++. ..+.+.++++ ..+++++| +|....+.+.+.+
T Consensus 86 ~~~~~~~~yg~----~~~~v~~~l~-----------------------------~G~illLD-----LD~~~~~~i~~~l 127 (219)
T 1s96_A 86 HAEVFGNYYGT----SREAIEQVLA-----------------------------TGVDVFLD-----IDWQGAQQIRQKM 127 (219)
T ss_dssp EEEETTEEEEE----EHHHHHHHHT-----------------------------TTCEEEEE-----CCHHHHHHHHHHC
T ss_pred HHHHHhccCCC----CHHHHHHHHh-----------------------------cCCeEEEE-----ECHHHHHHHHHHc
Confidence 43322112221 1122333321 25788888 8987777777766
Q ss_pred cC---ceEEEeCHHHHHHHHhhccccCCChHHHH
Q 023126 226 DE---KWFIEVDLDTAMQRVLKRHISTGKPPDVA 256 (287)
Q Consensus 226 ~~---~i~vtHd~~~~~~rv~gr~v~~G~~~ev~ 256 (287)
.. +++++|+++++..|+.+|- .++++++.
T Consensus 128 ~~~~tI~i~th~~~~l~~Rl~~rG--~~~~e~i~ 159 (219)
T 1s96_A 128 PHARSIFILPPSKIELDRRLRGRG--QDSEEVIA 159 (219)
T ss_dssp TTCEEEEEECSSHHHHHHHHHTTS--CSCHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHcC--CCCHHHHH
Confidence 43 3578999999988765332 34555543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-15 Score=134.84 Aligned_cols=155 Identities=13% Similarity=0.017 Sum_probs=73.6
Q ss_pred CcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH-hcccCCCCcccccCCCCC-----CceeE
Q 023126 55 TRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKP-----PDVAT 127 (287)
Q Consensus 55 ~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~-l~~~~p~~G~i~~~~~~~-----~~~i~ 127 (287)
++++++|+.+.++ +++ +.| +|+|+||||||||+++|.|. +. |++| +.+.|... ...++
T Consensus 2 ~~l~~~~~~~~~l-----~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVHRKSVK-----KGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERV-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceECCEEEE-----cCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCC-cccCCcccCCcceEeeEE
Confidence 4678888887777 777 765 99999999999999999997 76 8888 65444321 23367
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEc
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d 207 (287)
+++|...... .+++++++.++..... . ++...+.+.+....+.++.++||||+||+.++++++ +++++
T Consensus 67 ~~~q~~~~~~--~ltv~Dt~g~~~~~~~---~---e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ld 134 (301)
T 2qnr_A 67 VEIEERGVKL--RLTVVDTPGYGDAINC---R---DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFI 134 (301)
T ss_dssp EEEC---CCE--EEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEE
T ss_pred EEecCCCccc--CcchhhhhhhhhhcCc---H---HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeee
Confidence 7777643322 3788888876432210 0 111111111222223566789999999999965542 78888
Q ss_pred Cccc-CCChhhHHHHHHhhcC----ceEEEeCHH
Q 023126 208 GNYL-FLDGGVWKDVSSMFDE----KWFIEVDLD 236 (287)
Q Consensus 208 ~~~l-llDe~~~~~l~~~~~~----~i~vtHd~~ 236 (287)
+++. .+|+...+.++.+... .|+.+||+.
T Consensus 135 ePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 135 SPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred cCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 8876 4887544555555432 236689974
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-14 Score=127.19 Aligned_cols=140 Identities=12% Similarity=-0.059 Sum_probs=85.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------------ceeEEEeCCCCCCCcccCCccc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHLYLSQLDAME 145 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------------~~i~~v~qd~~~~~~~~ltv~e 145 (287)
+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+.. ..+++++|+.... +..++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~--p~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTD--SAALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCC--HHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCC--HHHHHHH
Confidence 689999999999999999999999999 99999988776531 1378888875432 2367777
Q ss_pred cHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccE--EEEcCcccCCChhhHHHHHH
Q 023126 146 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV--VIVDGNYLFLDGGVWKDVSS 223 (287)
Q Consensus 146 ~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~--li~d~~~lllDe~~~~~l~~ 223 (287)
++.+.... +.. . .+++..+. .+.....++...+||++++++++..|+. +.+|+..-. ..++.+..
T Consensus 176 ~v~~~~~~-~~d----~----~llDt~G~-~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~---~~~~~~~~ 242 (304)
T 1rj9_A 176 AVQAMKAR-GYD----L----LFVDTAGR-LHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ---NGLEQAKK 242 (304)
T ss_dssp HHHHHHHH-TCS----E----EEECCCCC-CTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT---HHHHHHHH
T ss_pred HHHHHHhC-CCC----E----EEecCCCC-CCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH---HHHHHHHH
Confidence 77654321 100 0 00000110 0111111222337899999999888883 334432221 34444444
Q ss_pred hhc----CceEEEeCHHH
Q 023126 224 MFD----EKWFIEVDLDT 237 (287)
Q Consensus 224 ~~~----~~i~vtHd~~~ 237 (287)
+.+ ..+++||+.+.
T Consensus 243 ~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 243 FHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHCCSEEEEECTTSS
T ss_pred HHHHcCCcEEEEECCccc
Confidence 432 35799998654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.4e-14 Score=133.97 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=87.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~ 156 (287)
.+.+|++++|+|+||||||||++.++|... |+ |+ ..+.+.+|++. ..+..+ ...++.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~-G~---------~vi~~~~ee~~------~~l~~~----~~~~g~ 333 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENAC---AN-KE---------RAILFAYEESR------AQLLRN----AYSWGM 333 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHH---TT-TC---------CEEEEESSSCH------HHHHHH----HHTTSC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hC-CC---------CEEEEEEeCCH------HHHHHH----HHHcCC
Confidence 799999999999999999999999999997 74 43 11344555531 011111 112222
Q ss_pred CCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh-----hHHHHHHh----h
Q 023126 157 PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVSSM----F 225 (287)
Q Consensus 157 ~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~-----~~~~l~~~----~ 225 (287)
+.+ + +...+ ...+.++..||+||+||+++++++..+|+++++| ++..+|.. ..+.+.++ .
T Consensus 334 ----~~~---~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 334 ----DFE---E-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp ----CHH---H-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred ----CHH---H-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH
Confidence 111 1 22222 3445667799999999999999999999999999 99989875 44443333 2
Q ss_pred c---CceEEEeCH
Q 023126 226 D---EKWFIEVDL 235 (287)
Q Consensus 226 ~---~~i~vtHd~ 235 (287)
+ .+++++|+.
T Consensus 405 ~~g~tvilvsh~~ 417 (525)
T 1tf7_A 405 QEEITGLFTNTSD 417 (525)
T ss_dssp HTTCEEEEEEECS
T ss_pred hCCCEEEEEECcc
Confidence 2 236899998
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-15 Score=150.78 Aligned_cols=148 Identities=16% Similarity=0.089 Sum_probs=98.6
Q ss_pred CCCccccCc-----ccccc-cccchhhhhhcCcc-ceecC-------CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 48 AQPVFGKTR-----SLVQN-KTSLKVLCSQRREI-PVVEA-------RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 48 ~~~~~~~~~-----~~~~~-~~~~~~v~~~~~~~-~~i~~-------GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
..+++++++ +.+.| +...++ +++ +.+.+ |++++|+||||||||||+|+| |++. +-
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~-----ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~~-- 815 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIP-----NDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---VM-- 815 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCC-----EEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---HH--
T ss_pred CCceEEEEeccccEEEEEecCCceEe-----eeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---HH--
Confidence 345677777 77777 556666 787 88877 899999999999999999999 9986 31
Q ss_pred ccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhh
Q 023126 114 SSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 114 ~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~i 193 (287)
.+..+|+||+.. .+++.+++.. ..+.. + .......++|++|++ +++
T Consensus 816 ---------aqiG~~Vpq~~~-----~l~v~d~I~~---rig~~-----d-----------~~~~~~stf~~em~~-~a~ 861 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC-----RLTPIDRVFT---RLGAS-----D-----------RIMSGESTFFVELSE-TAS 861 (1022)
T ss_dssp ---------HTTTCCEESSEE-----EECCCSBEEE---ECC-------------------------CHHHHHHHH-HHH
T ss_pred ---------hheeEEeccCcC-----CCCHHHHHHH---HcCCH-----H-----------HHhhchhhhHHHHHH-HHH
Confidence 111238888742 3677666531 11110 0 011123466777764 888
Q ss_pred hhhhccCccEEEEcCcccCCCh-----hhHHHHHHhhcC----ceEEEeCHHHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG-----GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe-----~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
+++++.++.++++||+...+|. ..+..+..+.+. ++++||+++++..
T Consensus 862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence 8999999999999999999997 245556555432 4699999999865
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-14 Score=123.45 Aligned_cols=115 Identities=13% Similarity=0.044 Sum_probs=75.9
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++. +++|++++|+||||||||||+++|+|+++ |+ +|+|.+.+.+. .|++++...+ +.+
T Consensus 18 ~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i----~~~~~~~~~~------v~q------ 77 (261)
T 2eyu_A 18 LELC-HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI----EYVFKHKKSI------VNQ------ 77 (261)
T ss_dssp HHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC----CSCCCCSSSE------EEE------
T ss_pred HHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc----eeecCCccee------eeH------
Confidence 4444 89999999999999999999999999998 87 89887665432 2233221100 000
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcC---c
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE---K 228 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~---~ 228 (287)
..++.. ... -|++++.++..+|+++++||+. |++....+.+.... +
T Consensus 78 ------------------~~~gl~----~~~------l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~~~g~~v 126 (261)
T 2eyu_A 78 ------------------REVGED----TKS------FADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLV 126 (261)
T ss_dssp ------------------EEBTTT----BSC------HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHHHTTCEE
T ss_pred ------------------HHhCCC----HHH------HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHHccCCEE
Confidence 011100 011 2789999999999999999998 87544333333222 3
Q ss_pred eEEEeCHHHH
Q 023126 229 WFIEVDLDTA 238 (287)
Q Consensus 229 i~vtHd~~~~ 238 (287)
++++|+.+..
T Consensus 127 l~t~H~~~~~ 136 (261)
T 2eyu_A 127 FGTLHTNTAI 136 (261)
T ss_dssp EEEECCSSHH
T ss_pred EEEeCcchHH
Confidence 5789998743
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-14 Score=119.88 Aligned_cols=179 Identities=16% Similarity=0.217 Sum_probs=89.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~ 156 (287)
...+|++++|+|+||||||||+++|++.++ +.+|.+ .++.+|.+............ ..+...+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v-----------~~~~~d~~~~~~~~~~~~~~-~~~~~~~-- 80 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISV-----------CVFHMDDHIVERAKRYHTGN-EEWFEYY-- 80 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCE-----------EEEEGGGGCCCHHHHSSSSS-CHHHHHH--
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeE-----------EEeccCcccCCHHHHHhcCC-CCccCCC--
Confidence 467899999999999999999999999997 666643 34455544322100000000 0011111
Q ss_pred CCCchHHHHHHH-HHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCH
Q 023126 157 PWTFNPLLLLNC-LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 235 (287)
Q Consensus 157 ~~~~~~~~~~~~-l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~ 235 (287)
+...+.+.+.+. +..+........+.|..-...+.. +........++|+|+++++.. .+.+.++..|+++.+.
T Consensus 81 ~~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~-----~~~~~~d~~i~v~~~~ 154 (201)
T 1rz3_A 81 YLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDCPR 154 (201)
T ss_dssp HTSSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECCC-
T ss_pred ccccCHHHHHHHHHHHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccH-----HHHhhcCEEEEEeCCH
Confidence 123445554333 233322222222233322111111 111223467899999987643 2455677789999999
Q ss_pred HHHHHHHhhccccCCChHHHHHHHHHhcCcchHH-HHhhc--CCCccEEeccC
Q 023126 236 DTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSI 285 (287)
Q Consensus 236 ~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~-~i~~~--~~~aD~i~~~~ 285 (287)
++..+|++.|. +++ .+.+.....+.++ |+.+. +.+||+||+|.
T Consensus 155 ~~~~~R~~~R~------~~~-~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 155 EIRFARENDQV------KQN-IQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp -------------------C-HHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHHHHHhcCC------HHH-HHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 98888877665 222 2223222345565 76665 68899999874
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-15 Score=138.56 Aligned_cols=143 Identities=12% Similarity=0.020 Sum_probs=89.0
Q ss_pred ccccCcccccccccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 124 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~------ 124 (287)
.+.++++++.++....+ ++++ ..+|++++|+||||||||||+++|+|++. |++|.|.+.+.+...
T Consensus 143 ~~~l~~Lg~~~~~~~~L-----~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ie~~~~~~~ 213 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNF-----RRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEFDIDGIG 213 (418)
T ss_dssp CCCGGGSCCCHHHHHHH-----HHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCSCCSSSE
T ss_pred CCCHHHcCCCHHHHHHH-----HHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccchhccCCcc
Confidence 56778888777655555 5554 48999999999999999999999999999 999998765543211
Q ss_pred ------eeEEEe---------CCCCCCCccc----CCccccHHHHHHhcCC-----CCCchHHHHHHHHHHhccCCCCCC
Q 023126 125 ------VATVLP---------MDGFHLYLSQ----LDAMEDPKEAHARRGA-----PWTFNPLLLLNCLKNLRNQGSVYA 180 (287)
Q Consensus 125 ------~i~~v~---------qd~~~~~~~~----ltv~e~i~~~~~~~~~-----~~~~~~~~~~~~l~~l~~~~~~~~ 180 (287)
.+++.+ |++......+ .|+.+++.... .++ ..+.+...+.+.|..++......+
T Consensus 214 q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~--tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~ 291 (418)
T 1p9r_A 214 QTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL--TGHLVMSTLHTNTAVGAVTRLRDMGIEPFLIS 291 (418)
T ss_dssp EEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH--TTCEEEEEECCSSSHHHHHHHHHHTCCHHHHH
T ss_pred eEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHH--hCCCcccccchhhHHHHHHHHHHcCCcHHHHH
Confidence 122222 5543221111 24455554432 121 012222333345556653333355
Q ss_pred CCCCcccCCchhhhhhhccCccEEEE
Q 023126 181 PSFDHGVGDPVEDDILVGLQHKVVIV 206 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al~~~a~~li~ 206 (287)
..|||||+|| ++++++.++++...
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccCC
Confidence 6899999999 77777777776553
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.5e-16 Score=149.10 Aligned_cols=77 Identities=10% Similarity=-0.008 Sum_probs=58.6
Q ss_pred CCccccCcccccccccchhhhhhcCcc-c-eecCCeEEEEECCCCCCHHHHHHH--HHHHhcccCCCCcccccCCCCCC-
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-P-VVEARHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPP- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~i~~GeivgIiG~nGsGKSTLlk~--L~G~l~~~~p~~G~i~~~~~~~~- 123 (287)
+++++.+++.+-++...++ +++ + .+++|++++|+||||||||||+++ ++|+++ |++|.+++++....
T Consensus 10 ~~~~~~~~~~~~~~g~~~L-----d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~~~ 81 (525)
T 1tf7_A 10 NNNSEHQAIAKMRTMIEGF-----DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEETPQ 81 (525)
T ss_dssp ----CCSSCCEECCCCTTH-----HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSCHH
T ss_pred CCCccccccccccCCchhH-----HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCCHH
Confidence 4456666666656566677 888 8 999999999999999999999999 789998 89999988876521
Q ss_pred ------ceeEEEeCCC
Q 023126 124 ------DVATVLPMDG 133 (287)
Q Consensus 124 ------~~i~~v~qd~ 133 (287)
..+++++|+.
T Consensus 82 ~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 82 DIIKNARSFGWDLAKL 97 (525)
T ss_dssp HHHHHHGGGTCCHHHH
T ss_pred HHHHHHHHcCCChHHh
Confidence 2367777763
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-13 Score=138.43 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=78.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +. |++++|+||||||||||+|+|+|+..- ++.|.+... ....+++++| .+ +.+++.+|+..
T Consensus 570 ~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~--~~~G~~vpa---~~~~i~~v~~----i~-~~~~~~d~l~~-- 634 (765)
T 1ewq_A 570 NDLEMA---HELVLITGPNMAGKSTFLRQTALIALL--AQVGSFVPA---EEAHLPLFDG----IY-TRIGASDDLAG-- 634 (765)
T ss_dssp EEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCSE----EE-EECCC--------
T ss_pred eeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh--cccCceeeh---hccceeeHHH----hh-ccCCHHHHHHh--
Confidence 555 54 999999999999999999999998631 567764321 1122444333 11 12444444321
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhh--ccCccEEEEcCc---ccCCChh-----hHHHH
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG-----VWKDV 221 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al--~~~a~~li~d~~---~lllDe~-----~~~~l 221 (287)
.+|+|+++++.++.++ +.+++++++||+ +.-+|.. +++.+
T Consensus 635 ------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L 684 (765)
T 1ewq_A 635 ------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL 684 (765)
T ss_dssp ------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred ------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHH
Confidence 3577888888888887 889999999999 8888862 33334
Q ss_pred HHhhcCceEEEeCHHHH
Q 023126 222 SSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 222 ~~~~~~~i~vtHd~~~~ 238 (287)
.+.-..++++||+.+..
T Consensus 685 ~~~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 685 HERRAYTLFATHYFELT 701 (765)
T ss_dssp HHHTCEEEEECCCHHHH
T ss_pred HhCCCEEEEEeCCHHHH
Confidence 33112357999998875
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.37 E-value=9.9e-14 Score=136.01 Aligned_cols=155 Identities=8% Similarity=-0.027 Sum_probs=81.9
Q ss_pred ccccCcccccccccchhhhhhcC--------ccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccccCCCC
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRR--------EIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVK 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~--------~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-~~G~i~~~~~~ 121 (287)
.+++++++..|+.....+-...+ ..+.++. +||+||||||||||+++|+|++. | ++|.|.++|..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g~~ 83 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCPLV 83 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSCEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcCEE
Confidence 46677777777654321111111 1133333 89999999999999999999987 8 79999887743
Q ss_pred -----------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCc
Q 023126 122 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP 190 (287)
Q Consensus 122 -----------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qr 190 (287)
....++|++|+....+ .+++.+|+.+.....+.. . .+..+++
T Consensus 84 i~~~~~~~~~~~~~~i~~v~Q~~~l~~--~~tv~e~i~~~~~~~~~~-----------------~--------~~~s~~~ 136 (608)
T 3szr_A 84 LKLKKLVNEDKWRGKVSYQDYEIEISD--ASEVEKEINKAQNAIAGE-----------------G--------MGISHEL 136 (608)
T ss_dssp EEEEECSSSSCCEEEESCC---CCCCC--HHHHHTTHHHHHHHHHCS-----------------S--------SCCCSCC
T ss_pred EEEecCCccccceeEEeeecccccCCC--HHHHHHHHHHHHHHhcCC-----------------c--------cccchHH
Confidence 1234788888754333 367878776643222110 0 1222355
Q ss_pred hhhhhhhccCccEEEEcCc------ccCCChh----hHHHHHHhhcC---c--eEEEeCHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGN------YLFLDGG----VWKDVSSMFDE---K--WFIEVDLDTA 238 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~------~lllDe~----~~~~l~~~~~~---~--i~vtHd~~~~ 238 (287)
+.++.+....++++++|+| +..+|+. +++.+.++... . ++++||++.+
T Consensus 137 i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 137 ITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp EEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred HHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 5555556667899999999 8889984 34444443321 1 3789998744
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.37 E-value=6.8e-14 Score=117.54 Aligned_cols=130 Identities=14% Similarity=0.039 Sum_probs=83.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC------CCceeEEEeCCCCCCCcccCCccccHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 154 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~ 154 (287)
|++++|+||||||||||+++|+|+++ ++| +.+++.. ..+.+++++|+... . .+++. ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~----~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g----~---~~~l~----~~ 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK----SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG----T---RGPLS----RV 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH----HTT-CCCEEEECCEEETTSSEEEEEEEETTS----C---EEEEE----EC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc----cCC-EEEcCEecchhHhhhceEEEEEEeccc----c---eehhh----cc
Confidence 78999999999999999999999984 567 7776532 23457888887411 0 12211 01
Q ss_pred CCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchh-hhh---hhccCccEEEEcC--cccCCChhhHHHHHHhhcC-
Q 023126 155 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-DDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE- 227 (287)
Q Consensus 155 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~-ia~---al~~~a~~li~d~--~~lllDe~~~~~l~~~~~~- 227 (287)
....... .-......+...+|+||++++. ++. |+..+++++++|+ ++-..|+.+++.+.++.+.
T Consensus 65 ~~~~~~~---------~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 65 GLEPPPG---------KRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp CCCCCSS---------SCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred cccCCcc---------ccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 1100000 0000122334468899988874 344 4678889999999 7777888888888888753
Q ss_pred --ceE--EE--eCH
Q 023126 228 --KWF--IE--VDL 235 (287)
Q Consensus 228 --~i~--vt--Hd~ 235 (287)
.|+ ++ |+.
T Consensus 136 ~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 136 GTIILGTIPVPKGK 149 (189)
T ss_dssp SCCEEEECCCCCSS
T ss_pred CcEEEEEeecCCCC
Confidence 233 34 886
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.36 E-value=5e-14 Score=129.21 Aligned_cols=111 Identities=13% Similarity=-0.047 Sum_probs=69.9
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC-CC----CCCceeEEEeCCCCCCCcccCCccccHHHHHH
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QV----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~-~~----~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~ 152 (287)
..+|++++|+||||||||||+++|+|.+.. |++|+|... |. .....+++++|+...++ ..++.++.
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~d--tpgv~e~~----- 282 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVID--SPGVREFG----- 282 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEECTTSCEEEE--CHHHHTCC-----
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEEECCCCEecC--cccHHHhh-----
Confidence 458999999999999999999999998742 688998765 42 23345788888765332 24555531
Q ss_pred hcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhc
Q 023126 153 RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
.++.+.....+.+.++++.++ ...+.....+| ||+||+++|.+++
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 111111112233455565555 34567788999 9999999966543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-13 Score=124.88 Aligned_cols=161 Identities=13% Similarity=0.009 Sum_probs=87.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc--ccccCCCC--C
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQVK--P 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G--~i~~~~~~--~ 122 (287)
...++++.+++++|+.+.++ +++ +.| +|+|+||||||||+++|+|... |+.| .+...... .
T Consensus 8 ~~~~l~~~~l~~~y~~~~vl-----~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~~~t~~ 73 (418)
T 2qag_C 8 LEGYVGFANLPNQVYRKSVK-----RGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRIKKTVQ 73 (418)
T ss_dssp -------CCCCCCTTTTTCC------CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC-----CCE
T ss_pred CcCcEEEEecceeECCEEEe-----cCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCCcccee
Confidence 34578999999999987777 887 765 9999999999999999999876 5544 22221111 1
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
...+++++|+..... .+++++++.+...... ...+..+.+.++. .++.+++||++++++++.+++
T Consensus 74 ~~~i~~v~q~~~~~~--~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~~----------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 74 VEQSKVLIKEGGVQL--LLTIVDTPGFGDAVDN---SNCWQPVIDYIDS----------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp EEEEECC------CE--EEEEEECC--------------CHHHHHHHHH----------HHHHHTTTSCC-CCCCCCCC-
T ss_pred eeeEEEEEecCCccc--ceeeeechhhhhhccc---hhhHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCCC
Confidence 123677777644322 3789999876543211 1112223222221 344567889999999999999
Q ss_pred ---EEEEcCcc-cCCChhhHHHHHHhhcC--ceEEEeCHHH
Q 023126 203 ---VVIVDGNY-LFLDGGVWKDVSSMFDE--KWFIEVDLDT 237 (287)
Q Consensus 203 ---~li~d~~~-lllDe~~~~~l~~~~~~--~i~vtHd~~~ 237 (287)
+|++++++ ..+|+.-...+..+... +|+|.|-.+.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dl 179 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADT 179 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTS
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccC
Confidence 89999998 57887433444444332 3566665543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=110.98 Aligned_cols=143 Identities=15% Similarity=0.074 Sum_probs=86.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-CceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
.+.+|++++|+||||||||||++.+++.+. .|.++.+.... ...+.|+..+.. . +.+.......+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~g~~~~~~~~v~~~~~e~~--------~-~~~~~r~~~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLLEVGELPTGPVIYLPAEDP--------P-TAIHHRLHALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTTCCCCCCCCCEEEEESSSC--------H-HHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCccCCCccEEEEECCCC--------H-HHHHHHHHHHH
Confidence 478999999999999999999999999764 35554432111 223566554321 1 11111111111
Q ss_pred CCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCccc--CCCh-------hhHHHHHHh
Q 023126 156 APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDG-------GVWKDVSSM 224 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~l--llDe-------~~~~~l~~~ 224 (287)
. ........++++.+. ...+.++..||+|+.|++ .+++.+++++++|++.. .+|+ .+++.|.++
T Consensus 92 ~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l 166 (279)
T 1nlf_A 92 A--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAI 166 (279)
T ss_dssp T--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHH
T ss_pred h--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHH
Confidence 1 112233445566655 334567889999997765 45667899999999998 6676 234445544
Q ss_pred hc----CceEEEeCHHHH
Q 023126 225 FD----EKWFIEVDLDTA 238 (287)
Q Consensus 225 ~~----~~i~vtHd~~~~ 238 (287)
.. .+|+++|+....
T Consensus 167 ~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 167 AADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHCCEEEEEEEC----
T ss_pred HHHcCCEEEEEecCCCcc
Confidence 32 246899998765
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-12 Score=117.81 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=47.2
Q ss_pred CCCCCCCCcccCC------chhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHH
Q 023126 177 SVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 177 ~~~~~~lSgG~~q------rv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
++++..||||||| |+++|++++.+|++|++|+|+..||+. +++.+.++.. ..+++|||.+.
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH
Confidence 3467799999999 567777888899999999999999983 4445555443 24689999664
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-14 Score=120.17 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=28.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|++++|+||||||||||+++|+|.+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999999999776
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-13 Score=140.85 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=77.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+++|++++|+||||||||||+|+++++.-- +..|. +++.... .+...+.+
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--aq~g~-------------~vpa~~~-----~i~~~d~i---- 719 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--AQIGS-------------YVPAEEA-----TIGIVDGI---- 719 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--HHHTC-------------CBSSSEE-----EEECCSEE----
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--hhcCc-------------cccchhh-----hhhHHHHH----
Confidence 677 88999999999999999999999999876430 11111 1111100 00000000
Q ss_pred HhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhH-HHHHHh
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVW-KDVSSM 224 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~-~~l~~~ 224 (287)
+..++ +.......++|+||+|++.++.+ +.++.++++||++..+|+ .+. ..+..+
T Consensus 720 -----------------~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L 781 (918)
T 3thx_B 720 -----------------FTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYF 781 (918)
T ss_dssp -----------------EEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred -----------------HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 00111 11223456889999999998776 778999999999999998 232 334444
Q ss_pred hc----CceEEEeCHHHHH
Q 023126 225 FD----EKWFIEVDLDTAM 239 (287)
Q Consensus 225 ~~----~~i~vtHd~~~~~ 239 (287)
.. .++++||+++.+.
T Consensus 782 ~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 782 IRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHTTCCEEEEECSCGGGGG
T ss_pred HHhcCCeEEEEeCcHHHHH
Confidence 22 2469999998764
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.7e-12 Score=113.63 Aligned_cols=148 Identities=11% Similarity=-0.041 Sum_probs=79.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-cccc-CCCCCC----ceeEEEeCCCCCCCcccCCccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD-SQVKPP----DVATVLPMDGFHLYLSQLDAME 145 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G-~i~~-~~~~~~----~~i~~v~qd~~~~~~~~ltv~e 145 (287)
+++ +.+++|++++|+|+||||||||++.|+|.+. |++| .+.+ +..... .++..+.++. .+...+
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~------~~~~~~ 96 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMGKKVGLAMLEESVEETAEDLIGLHNRV------RLRQSD 96 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSCCCEEEEESSSCHHHHHHHHHHHHTTC------CGGGCH
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcCCeEEEEeCcCCHHHHHHHHHHHHcCC------Chhhcc
Confidence 666 8899999999999999999999999999998 8877 4422 111100 0000001000 001111
Q ss_pred cHHHHHHhcCCCCCchHH-HHHHHHHHhccCCCCCCCCCCccc-CCchhhhhhhccCccEEEEcCcccCC------Ch--
Q 023126 146 DPKEAHARRGAPWTFNPL-LLLNCLKNLRNQGSVYAPSFDHGV-GDPVEDDILVGLQHKVVIVDGNYLFL------DG-- 215 (287)
Q Consensus 146 ~i~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~lSgG~-~qrv~ia~al~~~a~~li~d~~~lll------De-- 215 (287)
++.... .. ..+.. .+.++++.........+..+|.++ +|++. ++++..+++++++|++..++ |.
T Consensus 97 ~l~~~~----~~-~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~ 170 (296)
T 1cr0_A 97 SLKREI----IE-NGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERK 170 (296)
T ss_dssp HHHHHH----HH-HTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CH
T ss_pred ccccCC----CC-HHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHH
Confidence 111110 00 01111 122222211111122335678887 56665 78888999999999999854 32
Q ss_pred ---hhHHHHHHhhc----CceEEEeCH
Q 023126 216 ---GVWKDVSSMFD----EKWFIEVDL 235 (287)
Q Consensus 216 ---~~~~~l~~~~~----~~i~vtHd~ 235 (287)
.+++.|+++.. .+|+++|+.
T Consensus 171 ~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 171 MIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 24444544432 246889995
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=118.03 Aligned_cols=114 Identities=11% Similarity=-0.047 Sum_probs=76.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc---CCCCCC--------ceeEEEeCCCCCC--Cc-ccC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL--YL-SQL 141 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~---~~~~~~--------~~i~~v~qd~~~~--~~-~~l 141 (287)
+.+..|++++|+||||||||||+++|+ ++. |++|+|.+ .|.... ..+++++|++... .. +.+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence 567789999999999999999999999 988 99999988 664321 1378999987432 11 347
Q ss_pred CccccH--HHH----H--HhcCC-CCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhh
Q 023126 142 DAMEDP--KEA----H--ARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 142 tv~e~i--~~~----~--~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia 194 (287)
|+ +++ .+. . ...+. ...+...++.++++.++.. .+.++..|||.+++++.+|
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~ 299 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC 299 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 776 332 1 12222 2333445678888888743 3556778998777777773
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-13 Score=112.24 Aligned_cols=101 Identities=11% Similarity=-0.027 Sum_probs=60.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCC---CcccccCCCCCC------------ceeE----EEeCCCCCCCcccCC
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKPP------------DVAT----VLPMDGFHLYLSQLD 142 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~---~G~i~~~~~~~~------------~~i~----~v~qd~~~~~~~~lt 142 (287)
++++|+|+||||||||++.|+|++. |+ .|.|.+++.... ..++ +++|+.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE-----
Confidence 5899999999999999999999999 88 798888775411 1133 4555433211
Q ss_pred ccccHHHHHHhcCCCCCchHHHHHHHHHH-hccCCCCCC-CCCCcccCCchhhhhhhccCccE
Q 023126 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYA-PSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 143 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~-~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
.+ ........+.+.+.. +. ..+..+ ..|||||+||+++|+++..++.+
T Consensus 75 -~~-----------~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 75 -RR-----------VSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp -EE-----------CCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred -ec-----------CChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 00 000000123444444 43 222222 25999999999998887666543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.8e-12 Score=114.18 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CcccccCCCCCC----ceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPP----DVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-~G~i~~~~~~~~----~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
...+|++++|+||||||||||+++|+|+++ |+ +|.+...+.... ...+++.|...
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~----------------- 178 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHILTIEDPIEFVHESKKCLVNQREV----------------- 178 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCSSSEEEEEEB-----------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEEEEccCcHHhhhhccccceeeeee-----------------
Confidence 467888999999999999999999999998 77 444322111100 00011111100
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcC---c
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE---K 228 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~---~ 228 (287)
+. . .++..+ ++++++..+|+++++||+. |++.++.+.+.... +
T Consensus 179 ---~~-~-----------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~~G~~v 224 (356)
T 3jvv_A 179 ---HR-D-----------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAAETGHLV 224 (356)
T ss_dssp ---TT-T-----------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHHTTCEE
T ss_pred ---cc-c-----------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHhcCCEE
Confidence 00 0 000000 7888889999999999997 87777776665543 3
Q ss_pred eEEEeCHHHHHH
Q 023126 229 WFIEVDLDTAMQ 240 (287)
Q Consensus 229 i~vtHd~~~~~~ 240 (287)
++++|+.+.+..
T Consensus 225 l~t~H~~~~~~~ 236 (356)
T 3jvv_A 225 FGTLHTTSAAKT 236 (356)
T ss_dssp EEEESCSSHHHH
T ss_pred EEEEccChHHHH
Confidence 588999987733
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-13 Score=112.83 Aligned_cols=130 Identities=16% Similarity=0.052 Sum_probs=72.2
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------CceeEEEeCCCCCCCcccCCccccHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKE 149 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~~i~~v~qd~~~~~~~~ltv~e~i~~ 149 (287)
..+++|++++|+||||||||||+++|+|. |+.|.+.+++... ...++|++|+.. ...++.+++.+
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~ 74 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAAD 74 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHH
Confidence 35789999999999999999999999995 5678777665421 112344444321 12566677655
Q ss_pred HHHhcCC-CCCchHHHHH--HHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHH
Q 023126 150 AHARRGA-PWTFNPLLLL--NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (287)
Q Consensus 150 ~~~~~~~-~~~~~~~~~~--~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~ 223 (287)
....... ......+.+. ..++.+.. .+.++..+|+|++|++++++++..++++ + +|+...+.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ls~~~~~~v~~~R~~~r~~~~-------l-ld~~~~~~~~~ 142 (191)
T 1zp6_A 75 VAGRYAKEGYFVILDGVVRPDWLPAFTA-LARPLHYIVLRTTAAEAIERCLDRGGDS-------L-SDPLVVADLHS 142 (191)
T ss_dssp HHHHHHHTSCEEEECSCCCTTTTHHHHT-TCSCEEEEEEECCHHHHHHHHHTTCTTS-------C-CCHHHHHHHHH
T ss_pred HHHHHhccCCeEEEeccCcHHHHHHHHh-cCCCeEEEEecCCHHHHHHHHHhcCCCc-------c-CCHHHHHHHHH
Confidence 3321100 0000000000 00011110 1334458999999999998877655433 2 57654444443
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-13 Score=111.65 Aligned_cols=157 Identities=10% Similarity=-0.091 Sum_probs=73.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~ 158 (287)
|++++|+||||||||||+++|++ |.+|.+++++.... ...+++++... .....++++++.+....+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~------~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA------QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc------ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999987 55676665542210 11233333321 1112345555544322211000
Q ss_pred -CchHHHH--HHHHHHhccCCCCCCCCC--CcccCCchhhhh------hhccCccEEEEcCcccCCChhh---HHHHHHh
Q 023126 159 -TFNPLLL--LNCLKNLRNQGSVYAPSF--DHGVGDPVEDDI------LVGLQHKVVIVDGNYLFLDGGV---WKDVSSM 224 (287)
Q Consensus 159 -~~~~~~~--~~~l~~l~~~~~~~~~~l--SgG~~qrv~ia~------al~~~a~~li~d~~~lllDe~~---~~~l~~~ 224 (287)
....+.+ ...++ .+..+ |+||+|++.++. ++...++....|+ .+|+.. ++.+..+
T Consensus 74 ~~~ild~~~~~~~~~--------~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~~~~~~~~ 142 (189)
T 2bdt_A 74 NDVVLDYIAFPDEAE--------ALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLELVEEFESK 142 (189)
T ss_dssp CEEEEESCCCHHHHH--------HHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHHHHHHHHT
T ss_pred CcEEEeeccCHHHHH--------HHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHHHHHHhhc
Confidence 0000000 00000 01123 889998887754 3333332222221 234422 4555555
Q ss_pred hcC--c-eEEEeC-HHHHHH---HHh--hccccCCChHHHH
Q 023126 225 FDE--K-WFIEVD-LDTAMQ---RVL--KRHISTGKPPDVA 256 (287)
Q Consensus 225 ~~~--~-i~vtHd-~~~~~~---rv~--gr~v~~G~~~ev~ 256 (287)
... . |..||. ++.+.+ +++ |+++..|+++-+-
T Consensus 143 ~~~~~~ii~tsh~~~~~~e~~~~~i~~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 143 GIDERYFYNTSHLQPTNLNDIVKNLKTNPRFIFCMAGDPLE 183 (189)
T ss_dssp TCCTTSEEECSSSCGGGHHHHHHHHHHCGGGSCC-------
T ss_pred CCCccEEEeCCCCChhhHHHHHHHHhhCCcEEEeecCCchh
Confidence 332 3 455787 655544 666 8999999876653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-12 Score=117.62 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=51.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc--------------eeEEEeCCCCCCCcccCCc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~--------------~i~~v~qd~~~~~~~~ltv 143 (287)
.++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+ .+.+++|.... .+.+++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~--~p~~~v 200 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA--DPAAVA 200 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTC--CHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccC--CHHHHH
Confidence 36899999999999999999999999999 999998876654321 14467766332 223677
Q ss_pred cccHHHHH
Q 023126 144 MEDPKEAH 151 (287)
Q Consensus 144 ~e~i~~~~ 151 (287)
++|+.+..
T Consensus 201 ~e~l~~~~ 208 (328)
T 3e70_C 201 YDAIQHAK 208 (328)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-12 Score=120.37 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=37.8
Q ss_pred Ccc-ceecC--CeEEEEECCCCCCHHHHHHHHHHHhcccCCCC----ccccc
Q 023126 73 REI-PVVEA--RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----ASSFD 117 (287)
Q Consensus 73 ~~~-~~i~~--GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~----G~i~~ 117 (287)
+.+ +.|.+ |++++|+|+||||||||+++|+|+++ |++ |++.+
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i 207 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFV 207 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHH
Confidence 445 78999 99999999999999999999999999 998 87765
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.6e-12 Score=105.63 Aligned_cols=156 Identities=11% Similarity=0.028 Sum_probs=75.4
Q ss_pred ccccCcccccccccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCCcccccCCCCC-Cc
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVKP-PD 124 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l-----~~~~p~~G~i~~~~~~~-~~ 124 (287)
+++++++++.|+. ..+ ++ +.+.+|.+++|+|+||||||||++.|+|.. . |+.|.+...+... ..
T Consensus 3 ~l~~~~~~~~~~~-~~l-----~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~~~~~~~~ 72 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDI-----RH-LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVAD 72 (210)
T ss_dssp --------CEEEE-SSG-----GG-SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEET
T ss_pred chhhhhhhheeec-CCH-----hH-CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceeeEEEEecC
Confidence 5788999999973 334 44 889999999999999999999999999987 6 8888765421000 00
Q ss_pred eeEEEeCCCCCCCcccCCc----cccHHHHHHhc----------C--CCCCchHHHHHHHHHHhccC---CCCCCCCCCc
Q 023126 125 VATVLPMDGFHLYLSQLDA----MEDPKEAHARR----------G--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 185 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv----~e~i~~~~~~~----------~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSg 185 (287)
...++...++......... ...+....... . .+.......+.+++...+.. ...++..+|+
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 0111111111000000000 00111111100 0 01111222344444443311 1234557899
Q ss_pred ccCCc-hhhhhhhccCccEEEEcCcccCCChh
Q 023126 186 GVGDP-VEDDILVGLQHKVVIVDGNYLFLDGG 216 (287)
Q Consensus 186 G~~qr-v~ia~al~~~a~~li~d~~~lllDe~ 216 (287)
||+|+ +..+.+++..+..++.++++..+|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~ 184 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGDVQVETFSSLKKQ 184 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTB
T ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeecCCC
Confidence 99998 67777777666666778888888873
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-11 Score=104.99 Aligned_cols=184 Identities=24% Similarity=0.361 Sum_probs=107.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH---HhcCCC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGAP 157 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~---~~~~~~ 157 (287)
.-+++|.|+.||||||+++.|+..+...+.+ .....+.+++.|.++.. +. ...+.... ..+..+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d---------~~~~~~~~i~~D~~~~~---~~-~~~~~~~~~g~~~f~~~ 88 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVD---------YRQKQVVILSQDSFYRV---LT-SEQKAKALKGQFNFDHP 88 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSC---------GGGCSEEEEEGGGGBCC---CC-HHHHHHHHTTCSCTTSG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhccc---------ccCCceEEEecCccccc---cC-hhhhhhhccCCCCCCCc
Confidence 3589999999999999999999876511001 01122557888876432 11 11111111 012234
Q ss_pred CCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHH
Q 023126 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT 237 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~ 237 (287)
...+.+.+.+.|+.+........+.|+.....++.-.. ......++|+|+.+++.++ .+.+.++.+|+++.+.+.
T Consensus 89 ~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~-~~~~~~~vIveG~~~~~~~----~~~~~~d~vi~l~~~~e~ 163 (252)
T 1uj2_A 89 DAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYSQ----EVRDLFQMKLFVDTDADT 163 (252)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSSH----HHHHHCSEEEEEECCHHH
T ss_pred chhhHHHHHHHHHHHHcCCeeecCccccccccCCCcee-eeCCCcEEEEeeeccccCH----HHHHhcCeeEEEeCCHHH
Confidence 45566666677776643322222222211111111000 1123578999998876663 345567778999999999
Q ss_pred HHHHHhhcc-ccCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEe
Q 023126 238 AMQRVLKRH-ISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVI 282 (287)
Q Consensus 238 ~~~rv~gr~-v~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~ 282 (287)
..+|+..|. ...|...+.+...+.....+.+. ++.|.+..||+++
T Consensus 164 ~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 164 RLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210 (252)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred HHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence 988887653 34465555555555544444444 7888899999998
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.1e-12 Score=104.59 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=26.5
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+.+|++++|+||||||||||+++|+|+++
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999999999863
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-11 Score=101.82 Aligned_cols=136 Identities=15% Similarity=0.292 Sum_probs=79.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
..+.+|.+++|+|++||||||+++.|++.++ .+.++++|++......++.... ....+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------------------~~~~i~~D~~~~~~~~~~~~~~---~~~~~~ 74 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP------------------NCSVISQDDFFKPESEIETDKN---GFLQYD 74 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST------------------TEEEEEGGGGBCCGGGSCBCTT---SCBCCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC------------------CcEEEeCCccccCHhHhhcccc---CCChhH
Confidence 6789999999999999999999999999772 1788999977544321111000 000001
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCH
Q 023126 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 235 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~ 235 (287)
.....+...+.+.+..+-... ..+.++.++++ ..+.+++++|+.++.-++. +.+..+..++++-+.
T Consensus 75 ~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~~~~--------~~~~~~vi~eg~~~~~~~~----~~~~~d~~i~l~~~~ 140 (207)
T 2qt1_A 75 VLEALNMEKMMSAISCWMESA--RHSVVSTDQES--------AEEIPILIIEGFLLFNYKP----LDTIWNRSYFLTIPY 140 (207)
T ss_dssp SGGGBCHHHHHHHHHHHHHHH--TTSSCCC-------------CCCCEEEEECTTCTTCGG----GTTTCSEEEEEECCH
T ss_pred HHHHhHHHHHHHHHHHHHhCC--CCCCcCCCeee--------cCCCCEEEEeehHHcCcHH----HHHhcCeeEEEECCH
Confidence 111223333333322221110 12245566554 2346789999977665533 234566778999999
Q ss_pred HHHHHHHhhcc
Q 023126 236 DTAMQRVLKRH 246 (287)
Q Consensus 236 ~~~~~rv~gr~ 246 (287)
+....|+..|.
T Consensus 141 ~~~~~R~~~R~ 151 (207)
T 2qt1_A 141 EECKRRRSTRV 151 (207)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHcC
Confidence 99888776553
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-11 Score=123.94 Aligned_cols=125 Identities=13% Similarity=0.132 Sum_probs=73.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+.+|++++|+||||||||||+|++++..-- +..|. ++|.+... +...+.
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~--aq~G~-------------~vpa~~~~-----~~~~d~----- 707 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM--AQIGC-------------FVPCESAE-----VSIVDC----- 707 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH--HHHTC-------------CBSEEEEE-----EECCSE-----
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH--HhcCC-------------cccccccc-----chHHHH-----
Confidence 777 88999999999999999999999999544210 12221 11111100 000000
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhh--ccCccEEEEcCcccCCCh----hh-HHHHHHh
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDG----GV-WKDVSSM 224 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al--~~~a~~li~d~~~lllDe----~~-~~~l~~~ 224 (287)
++..++. .+.....+|+++.++..++.++ +.++.++++||+...+|. .+ +..+..+
T Consensus 708 ----------------i~~~ig~-~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l 770 (934)
T 3thx_A 708 ----------------ILARVGA-GDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYI 770 (934)
T ss_dssp ----------------EEEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHH
T ss_pred ----------------HHHhcCc-hhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 0001110 0111234667777777776666 888999999999999998 23 3334444
Q ss_pred hc----CceEEEeCHHHHH
Q 023126 225 FD----EKWFIEVDLDTAM 239 (287)
Q Consensus 225 ~~----~~i~vtHd~~~~~ 239 (287)
.+ .++++||+.+...
T Consensus 771 ~~~~g~~vl~aTH~~el~~ 789 (934)
T 3thx_A 771 ATKIGAFCMFATHFHELTA 789 (934)
T ss_dssp HHTTCCEEEEEESCGGGGG
T ss_pred HhcCCCEEEEEcCcHHHHH
Confidence 32 2469999988654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-11 Score=115.03 Aligned_cols=159 Identities=9% Similarity=-0.042 Sum_probs=84.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeE--EEEECCCCCCHHHHHHHHHHHhcccCCCCccccc--CCCCCCce
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD--SQVKPPDV 125 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~Gei--vgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~--~~~~~~~~ 125 (287)
.+++.+ ++.|+... + +++ +.+++|++ +||+||||||||||+++|+|+.- .|.... ........
T Consensus 16 ~l~~~~-~~~y~~~~-L-----~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-D-----QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC--C-H-----HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CCSSCEEEE
T ss_pred eEEEee-EEEECCee-c-----CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCCccceEee
Confidence 455666 88888766 6 788 99999999 99999999999999999999741 111100 00111235
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCc----hHHHHHHHHHHh-ccC------CCCCCC-------CCCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTF----NPLLLLNCLKNL-RNQ------GSVYAP-------SFDHG 186 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~----~~~~~~~~l~~l-~~~------~~~~~~-------~lSgG 186 (287)
++|++|+....+ .+|+.+++.++..... ..... ....+.+.+... +.. .+..+. ..+.|
T Consensus 84 i~~v~Q~~~l~~--~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 84 NTYDLQESNVRL--KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEC--CEE--EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEEeecCcccc--ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 889999855333 3788888765321000 00000 112233333332 111 111110 01111
Q ss_pred cCCc-hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHH
Q 023126 187 VGDP-VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSS 223 (287)
Q Consensus 187 ~~qr-v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~ 223 (287)
-..- +.++.++...+.+++++.+.-.+.+ .+.+.+++
T Consensus 162 l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 162 LKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp -CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 1111 4566777778899999999888765 34444554
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.4e-11 Score=108.98 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=41.1
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
+++ +.+++|++++|+||||||||||+++|+|+++ |++|.|.+++.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence 566 8999999999999999999999999999999 99999887653
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-13 Score=117.50 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=75.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH---HHhcccCCCCcccccCCCCCC----ceeEEEeCCCCCCCcccCCccccHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSFDSQVKPP----DVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~---G~l~~~~p~~G~i~~~~~~~~----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~ 152 (287)
++++++|+||||||||||+++|+ |+.. |+.|++.+.+.... ..+..++|++...+ ..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGHFLRENIKASTEVGEMAKQYIEKSLLVP--DHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Confidence 47899999999999999999999 8877 89999876542111 11233444433222 2566777765432
Q ss_pred h--------cCCCCCchHHHHHHHHH--Hhc--------------cCCCCCCCCCCcccCCchhhhhhh-ccCccEEEEc
Q 023126 153 R--------RGAPWTFNPLLLLNCLK--NLR--------------NQGSVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD 207 (287)
Q Consensus 153 ~--------~~~~~~~~~~~~~~~l~--~l~--------------~~~~~~~~~lSgG~~qrv~ia~al-~~~a~~li~d 207 (287)
. .+.+.. ...+..+.. .++ ...++.+..||| |+ +++ +.+|+++++|
T Consensus 101 ~~~~~~~il~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TCTTSCEEEESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred hcCCCeEEEECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 1 122222 122222211 111 112455668898 55 344 7788999999
Q ss_pred ----CcccCCChh
Q 023126 208 ----GNYLFLDGG 216 (287)
Q Consensus 208 ----~~~lllDe~ 216 (287)
+++..+|+.
T Consensus 172 ~~~~EP~~~ld~~ 184 (246)
T 2bbw_A 172 DVTGEPLVQQEDD 184 (246)
T ss_dssp TTTCCBCBCCGGG
T ss_pred cccccccccCCCC
Confidence 999999873
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.7e-12 Score=117.08 Aligned_cols=77 Identities=14% Similarity=-0.016 Sum_probs=56.3
Q ss_pred CCCC-CCCcccCCchhhhhhhc---------cCccEEEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHHHHh
Q 023126 178 VYAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQRVL 243 (287)
Q Consensus 178 ~~~~-~lSgG~~qrv~ia~al~---------~~a~~li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~rv~ 243 (287)
.++. .||+||+||+++|++++ ..+++|++|+++.-||+. +++.+.++....|++||+ +....+++
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~~~~~i~ 338 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-APGAALTL 338 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CTTCSEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cccCCEEE
Confidence 4555 79999999999999999 899999999999999994 444444433334577784 43111333
Q ss_pred ----hccccCCChHHH
Q 023126 244 ----KRHISTGKPPDV 255 (287)
Q Consensus 244 ----gr~v~~G~~~ev 255 (287)
|++++.|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 788888887765
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-11 Score=107.83 Aligned_cols=189 Identities=13% Similarity=0.101 Sum_probs=104.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCC-cccCCccccHHHHH----Hhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKEAH----ARR 154 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~-~~~ltv~e~i~~~~----~~~ 154 (287)
++-++||.|++||||||+++.|+..+. . .| ..+.++.+|.++.. ...++ ..+..+. ..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg---~-~~----------~~~~vI~~D~~~r~~~~~~~--~~~~~~~~~g~~~~ 67 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR---R-EG----------VKAVSIEGDAFHRFNRADMK--AELDRRYAAGDATF 67 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH---H-HT----------CCEEEEEGGGGBSCCHHHHH--HHHHHHHHHTCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh---h-cC----------CCeeEeecchhhcCCHHHhh--hhhhhhhhccCcCc
Confidence 355899999999999999999998764 1 00 12678899987642 11110 0000000 112
Q ss_pred CC--CCCchHHHHHHHHHHhccCCCCCCCCCCc---------ccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHH
Q 023126 155 GA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDH---------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (287)
Q Consensus 155 ~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lSg---------G~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~ 223 (287)
.. +...+.+.+.+.+..+........+.|.. .......-...+.....+++.|+.+++... ....+.+
T Consensus 68 ~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~-~~~~v~~ 146 (290)
T 1a7j_A 68 SHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVN-SEVNIAG 146 (290)
T ss_dssp STTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBC-SSCBCGG
T ss_pred CCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEeccccccc-chHhHHH
Confidence 22 33445556666666554322222222211 011111000011124679999999887320 0012455
Q ss_pred hhcCceEEEeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccE------EeccCC
Q 023126 224 MFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADL------VIKSID 286 (287)
Q Consensus 224 ~~~~~i~vtHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~------i~~~~~ 286 (287)
.++..||++.+.++...|++.|.+ ++|...+.+.+.+... .+.+. |+.|.+.+||+ ++++.+
T Consensus 147 ~~D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 147 LADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp GCSEEEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred hCCEEEEEECCHHHHHHHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 677789999999999888886654 5575554333334333 55554 99999999999 777653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=97.19 Aligned_cols=138 Identities=7% Similarity=-0.001 Sum_probs=74.8
Q ss_pred Ccc-c-eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH
Q 023126 73 REI-P-VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 150 (287)
Q Consensus 73 ~~~-~-~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~ 150 (287)
|.+ . .+.+|++++|+||||||||||++.|++.+. +++|.+ .|+..+. +. +.+...
T Consensus 13 d~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v-----------~~~~~~~--------~~-~~~~~~ 69 (235)
T 2w0m_A 13 DKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPC-----------IYVTTEE--------SR-DSIIRQ 69 (235)
T ss_dssp HGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCE-----------EEEESSS--------CH-HHHHHH
T ss_pred HHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeE-----------EEEEccc--------CH-HHHHHH
Confidence 455 3 689999999999999999999999999887 665543 3333321 11 111111
Q ss_pred HHhcCCCCCchHHHHHHHHHHhccC-----CCCCCCCCCcccCCchhhhhhhccCcc--EEEEcCcccCC--Ch----hh
Q 023126 151 HARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DG----GV 217 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~~qrv~ia~al~~~a~--~li~d~~~lll--De----~~ 217 (287)
....+........ ..+..+... ........|.++.++...+.+...+++ ++++|++..++ |+ .+
T Consensus 70 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~ 146 (235)
T 2w0m_A 70 AKQFNWDFEEYIE---KKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKI 146 (235)
T ss_dssp HHHTTCCCGGGBT---TTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHH
T ss_pred HHHhcchHHHHhh---CCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHH
Confidence 1111111100000 000000000 001112347777666666555556788 99999999777 86 34
Q ss_pred HHHHHHhhc----CceEEEeCHH
Q 023126 218 WKDVSSMFD----EKWFIEVDLD 236 (287)
Q Consensus 218 ~~~l~~~~~----~~i~vtHd~~ 236 (287)
++.+.++.. .+++++|+..
T Consensus 147 ~~~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 147 SYYLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp HHHHHHHHHHTTEEEEEEEC---
T ss_pred HHHHHHHHHhCCCeEEEEeccCc
Confidence 455554432 2468899983
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-11 Score=106.68 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHH---HHhcccCCCCcccc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSF 116 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~---G~l~~~~p~~G~i~ 116 (287)
.+|++++|+|||||||||++++|+ |+.. +++|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCcee
Confidence 678999999999999999999999 7776 9999987
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-11 Score=113.36 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=59.3
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------------ceeEEEeCCCCCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHLY 137 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------------~~i~~v~qd~~~~~ 137 (287)
+++ +.+.+|++++|+|+||||||||+++|+|++. |++|+|.+.+.+.. ..++|++|+....
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~- 359 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD- 359 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC-
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC-
Confidence 455 7899999999999999999999999999999 99999988654321 2378899875432
Q ss_pred cccCCccccHHHHHH
Q 023126 138 LSQLDAMEDPKEAHA 152 (287)
Q Consensus 138 ~~~ltv~e~i~~~~~ 152 (287)
+.+++++++.+...
T Consensus 360 -p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 360 -SASVIFDAIQAAKA 373 (503)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHh
Confidence 23688888887643
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-12 Score=123.01 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=40.4
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
+.+ +.+++|++++|+||||||||||+++|+|+++ |++|.+.+.+.
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~ 296 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESS
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCc
Confidence 455 7789999999999999999999999999999 99999877664
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.7e-11 Score=120.80 Aligned_cols=126 Identities=12% Similarity=0.125 Sum_probs=71.3
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +. ++|++++|+||||||||||+|+|+|+.-. ...|..... ....++++++ .+ ..+++.+++...
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~vpa---~~~~i~~~~~----i~-~~~~~~d~l~~~- 666 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYVPA---QKVEIGPIDR----IF-TRVGAADDLASG- 666 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCCE----EE-EEEC---------
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCcccch---hcccceeHHH----HH-hhCCHHHHHHhh-
Confidence 666 77 89999999999999999999999998531 233321100 0011222221 01 113333333221
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----h-hHHHHHHhhc
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----G-VWKDVSSMFD 226 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~-~~~~l~~~~~ 226 (287)
...+|.+|++ ++.+...+.++.++++||+...+|. . .+..+..+.+
T Consensus 667 ----------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 667 ----------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp -------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred ----------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh
Confidence 1234555543 2333345678999999999888886 2 2445555543
Q ss_pred ----CceEEEeCHHHHH
Q 023126 227 ----EKWFIEVDLDTAM 239 (287)
Q Consensus 227 ----~~i~vtHd~~~~~ 239 (287)
.++++||+.+...
T Consensus 718 ~~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 718 KIKALTLFATHYFELTQ 734 (800)
T ss_dssp TTCCEEEEECSCGGGGG
T ss_pred ccCCeEEEEeCCHHHHH
Confidence 2469999998653
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.4e-11 Score=106.78 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=58.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc---CCCCCC--------ceeEEEeCCCCCC--------
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL-------- 136 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~---~~~~~~--------~~i~~v~qd~~~~-------- 136 (287)
+.+..|++++|+||||||||||+++|+|++. |++|+|.+ +|.... ..+++++|.+...
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 5678899999999999999999999999999 99999987 554321 1378899886421
Q ss_pred ------CcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc
Q 023126 137 ------YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 137 ------~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~ 174 (287)
..+++++ +|+.+... ....+...++.++|+.++.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~~---~~~~e~~~~v~~~l~~~~L 280 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSDC---NHVDEPECGVKEAVENGEI 280 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTTC---CSSSCSSCHHHHHHHHTSS
T ss_pred HHHHHHHHHhccc-ccCcCCCC---cCCCCCCcHHHHHHHcCCC
Confidence 1235777 88776421 1122334567777777764
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.2e-12 Score=113.98 Aligned_cols=131 Identities=13% Similarity=-0.019 Sum_probs=78.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCC-------eEEEEECCCCCCHHHHHHHHHHHh----cccCCCCcccccC
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEAR-------HIVGLAGPPGAGKSTLAAEVVRRI----NKIWPQKASSFDS 118 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~G-------eivgIiG~nGsGKSTLlk~L~G~l----~~~~p~~G~i~~~ 118 (287)
.++.+++...+|...++ +.+ +.+++| +.++|.||||+|||||+++|+|.+ . +++|.+...
T Consensus 18 ~lr~~~l~~~~g~~~~~-----~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVK-----KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHH-----HHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEETTTCCS
T ss_pred HcCCccHHHccCcHHHH-----HHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEechHhcC
Confidence 45666777777766555 555 556655 789999999999999999999998 5 778877654
Q ss_pred CCC--------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC----CCchHHHHHHHHHHhc-cCCCCCCCCCCc
Q 023126 119 QVK--------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----WTFNPLLLLNCLKNLR-NQGSVYAPSFDH 185 (287)
Q Consensus 119 ~~~--------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~----~~~~~~~~~~~l~~l~-~~~~~~~~~lSg 185 (287)
+.+ ....+.++++.+.. . .++.+++......++.. .......+...+..+. .....++..||+
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l-~---~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~ 165 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRL-N---KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSS 165 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGC-C---HHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHccCCCEEEEcchhhc-C---HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCH
Confidence 321 12347788776432 1 14556554333333211 1111222333343343 224556679999
Q ss_pred ccCCchhh
Q 023126 186 GVGDPVED 193 (287)
Q Consensus 186 G~~qrv~i 193 (287)
|++||+.+
T Consensus 166 ~l~sR~~l 173 (334)
T 1in4_A 166 PLRSRFGI 173 (334)
T ss_dssp HHHTTCSE
T ss_pred HHHHhcCc
Confidence 99999876
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-13 Score=125.16 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=32.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh--------cccCCCCcccccCCC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRI--------NKIWPQKASSFDSQV 120 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l--------~~~~p~~G~i~~~~~ 120 (287)
=++++|+|+||||||||++.|.|+. . |+.|++.+++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~---~d~G~i~idg~ 48 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE---NEFGEVSVDDQ 48 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC---SSCCSCCEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE---ecCcccCccHH
Confidence 3689999999999999999999986 6 89999887764
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.5e-12 Score=115.64 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=67.3
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCC----cc-cccCCCCC--CceeEEEeCCCCCCCcccCCcccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQK----AS-SFDSQVKP--PDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~----G~-i~~~~~~~--~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
..+++|++++|+||||||||||++.|++.. + |++ |. +++++... ...+++++|... ++. -++.+|
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~-~~~--~~v~~n 199 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTFRPERIREIAQNRG-LDP--DEVLKH 199 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSSCCCHHHHHHHHHTTT-CCH--HHHGGG
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcC-CCH--HHHhhC
Confidence 569999999999999999999999999998 5 666 45 55555432 123444555422 111 134444
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh
Q 023126 147 PKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe 215 (287)
+.+.. . .......+.++.+. ..+.+||+|| .+++++++|++..++|.
T Consensus 200 i~~~~-----~--~~~~~~~~~l~~~~----~~~~~lS~G~-----------~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 200 IYVAR-----A--FNSNHQMLLVQQAE----DKIKELLNTD-----------RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp EEEEE-----C--CSHHHHHHHHHHHH----HHHHHSSSSS-----------SCEEEEEEETSSTTHHH
T ss_pred EEEEe-----c--CChHHHHHHHHHHH----HHHHHhcccc-----------CCCCEEEEeCchHhhhh
Confidence 43210 0 01111112222111 1123577777 45899999999999986
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-10 Score=105.02 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=34.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-Cccccc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFD 117 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-~G~i~~ 117 (287)
.+++|++++|+||||||||||+++|+|+++ |+ +|.|..
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~ 170 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIIT 170 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEE
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEE
Confidence 378999999999999999999999999998 87 788754
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-10 Score=108.52 Aligned_cols=45 Identities=24% Similarity=0.161 Sum_probs=42.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
+++ +.+++ +++||+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 21 ~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~ 66 (483)
T 3euj_A 21 FARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTT
T ss_pred cceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEE
Confidence 677 99999 9999999999999999999999999 999999998754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.2e-11 Score=108.09 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=54.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~ 119 (287)
+++.+++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|++. |++|++.+.+
T Consensus 29 ~ie~~~~~~~~~~~~~l-----~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~ 90 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLI-----DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLA 90 (337)
T ss_dssp HHTCSSHHHHHHHHHHH-----HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEE
T ss_pred HHeeCCcccccChHHHH-----HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEE
Confidence 68899999999877666 777 8999999999999999999999999999999 9999986654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.99 E-value=9e-12 Score=112.09 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=59.3
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc---CCCCCC------ce-eEEEeCCCCCCCcc--c
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP------DV-ATVLPMDGFHLYLS--Q 140 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~---~~~~~~------~~-i~~v~qd~~~~~~~--~ 140 (287)
+.++.+.+|++++|+|+||||||||+++|+|.+. |++|+|.+ .|.... .. +++++|.+...... .
T Consensus 165 ~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~ 241 (307)
T 1t9h_A 165 ADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTD 241 (307)
T ss_dssp TTTGGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccceeeecCCCcccccHHHHhhcCCEEEecCCCcccccccc
Confidence 3347788999999999999999999999999999 99999886 443221 11 68899886543321 3
Q ss_pred CCccccHH--HHH-H-h------cCC-CCCchHHHHHHHHHHhccCC--CCCCCCCCcccCC
Q 023126 141 LDAMEDPK--EAH-A-R------RGA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 189 (287)
Q Consensus 141 ltv~e~i~--~~~-~-~------~~~-~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~~q 189 (287)
+++ +++. +.. . . .+. ...+....+.++++.++... ......++.|++|
T Consensus 242 lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 242 IEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp CCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred CCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 567 7763 221 1 1 111 12223345677777766422 2233445555544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-10 Score=115.15 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=71.9
Q ss_pred HHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCcc--EEEEcCcccCCCh----hhHHHHHHhhc---CceEEE
Q 023126 165 LLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIE 232 (287)
Q Consensus 165 ~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~--~li~d~~~lllDe----~~~~~l~~~~~---~~i~vt 232 (287)
..+.|..++. ..++++.+|||||+||++||++++.++. ++++|||+..||+ .+++.++++.+ .+|+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3455666663 2467888999999999999999998666 9999999999998 44555555544 246999
Q ss_pred eCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 233 VDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 233 Hd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
||++++.. |++ |++++.|+++++..
T Consensus 524 Hd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99998765 443 57888999998754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-10 Score=117.11 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=83.2
Q ss_pred CCccccHHHHHHhcCCCCC----------chHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccC--ccEEE
Q 023126 141 LDAMEDPKEAHARRGAPWT----------FNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVI 205 (287)
Q Consensus 141 ltv~e~i~~~~~~~~~~~~----------~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~--a~~li 205 (287)
+|+.+++.|. .+.+.+.. +..+++ +.|..++. ..++++.+|||||+||++||.++..+ ++++|
T Consensus 452 ltV~e~~~f~-e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llI 529 (972)
T 2r6f_A 452 MSVTEALAFF-DGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYV 529 (972)
T ss_dssp SBHHHHHHHH-HHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEE
T ss_pred CCHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence 7888888884 44444431 112232 44667773 25788899999999999999999987 49999
Q ss_pred EcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 206 VDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
+|||+..||+ .+++.|+++.+ .+|+|+||++++.. |++ |++++.|+++++..
T Consensus 530 LDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 530 LDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 9999999998 45555555544 35799999998654 443 47788888887643
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-11 Score=108.88 Aligned_cols=41 Identities=34% Similarity=0.367 Sum_probs=33.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
+++ +.+.+| ++|.||||||||||+++|+|.+. + |.+.+++.
T Consensus 37 ~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~ 78 (274)
T 2x8a_A 37 KALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGP 78 (274)
T ss_dssp HHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETT
T ss_pred HHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcH
Confidence 566 778888 89999999999999999999987 5 45555543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-08 Score=83.88 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=26.0
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++ +.+.+|++++|+|++||||||+++.|++.+.
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 777 8999999999999999999999999999886
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.5e-09 Score=87.75 Aligned_cols=102 Identities=18% Similarity=0.117 Sum_probs=61.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~ 156 (287)
.+++|++++|+|+||||||||++.|++ . +.. .+.|+..+.. .+. +.+.......+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~------------~v~~i~~~~~------~~~-~~~~~~~~~~~~ 71 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--L---SGK------------KVAYVDTEGG------FSP-ERLVQMAETRGL 71 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCS------------EEEEEESSCC------CCH-HHHHHHHHTTTC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCC------------cEEEEECCCC------CCH-HHHHHHHHhcCC
Confidence 589999999999999999999999999 3 221 2555554421 111 111111121121
Q ss_pred CCCchHHHHHHHHHHhccCCCCCCCCCCcccC--CchhhhhhhccC-ccEEEEcCcccCCCh
Q 023126 157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDDILVGLQ-HKVVIVDGNYLFLDG 215 (287)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~--qrv~ia~al~~~-a~~li~d~~~lllDe 215 (287)
+.+ +.++.+ .+...+.+++ ++++.+.+++.. ++++++|++..++|.
T Consensus 72 ----~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 72 ----NPE---EALSRF------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp ----CHH---HHHHHE------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred ----ChH---HHhhcE------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 111 122222 2234455654 456666667764 999999999999874
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.5e-09 Score=87.19 Aligned_cols=116 Identities=8% Similarity=-0.016 Sum_probs=66.5
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC---------C-----CCCceeEEEeCCCCCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---------V-----KPPDVATVLPMDGFHLY 137 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~---------~-----~~~~~i~~v~qd~~~~~ 137 (287)
+++ +.+.+| +++|+||||||||||+++|.+++. +..|.....+ . .....+.+++|++...+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~ 93 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGF 93 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCcccccccccchheeecccccCCCCceEEEEEEEeCCCccc
Confidence 344 778888 999999999999999999999998 7776532221 1 12335777888754322
Q ss_pred cc---cCCccccHHHH-HHhcCC-CCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhh
Q 023126 138 LS---QLDAMEDPKEA-HARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 138 ~~---~ltv~e~i~~~-~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~i 193 (287)
++ .+++...+... ...+.. ........+.+.+..++...+. ..-++.|+.+++..
T Consensus 94 ~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~-~~~~~qg~~~~l~~ 153 (182)
T 3kta_A 94 PIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG-YNIVLQGDITKFIK 153 (182)
T ss_dssp SSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC-TTEECTTCTTHHHH
T ss_pred ccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC-CEEEEcccHHHHHh
Confidence 11 13333222110 000000 1112345667777776643322 23567787777644
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-09 Score=93.35 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=22.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHH-HHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVV-RRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~-G~l~ 106 (287)
+++ +.+++|+++||+||||||||||+++|+ |+++
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 556 999999999999999999999999999 9984
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.6e-10 Score=97.42 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=32.5
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
+.+.+ ++++|+||||||||||+++|+|++. |++|+|.+++..
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~ 64 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTT 64 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC------
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEE
Confidence 34555 7889999999999999999999999 999999887754
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-08 Score=90.40 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=65.3
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+...+|++++|+|+|||||||+++.|++.+. +..|+| .++..|.+ .+ ..
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV-----------~lv~~D~~---r~--~a------------ 147 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSV-----------VLAAADTF---RA--AA------------ 147 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCE-----------EEEEECTT---CH--HH------------
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEE-----------EEEccccc---cH--HH------------
Confidence 3467899999999999999999999999998 766543 44444532 00 00
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCch---hhhhhhccCccEEEEcCccc
Q 023126 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL 211 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv---~ia~al~~~a~~li~d~~~l 211 (287)
.+.+..+++.++.. .++.+|+|+.+++ +++.++...++++++|.+-.
T Consensus 148 ------~eqL~~~~~~~gl~---~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ------IEQLKIWGERVGAT---VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------HHHHHHHHHHHTCE---EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------HHHHHHHHHHcCCc---EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11222333333311 1346789999998 77777888889999987754
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-08 Score=91.13 Aligned_cols=126 Identities=14% Similarity=0.104 Sum_probs=62.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HhcccCCCCcccccCCCCCC------ceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQVKPP------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G-~l~~~~p~~G~i~~~~~~~~------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
.+.|.||||+|||||+++|++ ++. |+.|.+.+++.... ..++++++..+.... ..+ .+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------~~ 102 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEIT----PSD--------MG 102 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC---TTCCC------------------CCEECSSEEEEC----CC-----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEecceeecccccccceeeeecccceEEec----Hhh--------cC
Confidence 489999999999999999999 677 89999877664321 224455554321110 000 00
Q ss_pred CCCCchHHHHHHHHHHhccCC--CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----C--
Q 023126 156 APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E-- 227 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~-- 227 (287)
. .....+.+.++.+.... +... .||+ +..+++++++|+... +|+...+.+.+... .
T Consensus 103 ~---~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 103 N---NDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp ----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred C---cchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 0 11112334444332111 1111 3455 344589999999988 88854444444432 2
Q ss_pred ceEEEeCHHHHH
Q 023126 228 KWFIEVDLDTAM 239 (287)
Q Consensus 228 ~i~vtHd~~~~~ 239 (287)
.|++||+.+.+.
T Consensus 167 ~Il~t~~~~~l~ 178 (354)
T 1sxj_E 167 LIMVCDSMSPII 178 (354)
T ss_dssp EEEEESCSCSSC
T ss_pred EEEEeCCHHHHH
Confidence 368899976543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-10 Score=102.36 Aligned_cols=129 Identities=18% Similarity=0.079 Sum_probs=70.3
Q ss_pred cCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------Cc
Q 023126 54 KTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------PD 124 (287)
Q Consensus 54 ~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--------~~ 124 (287)
++++.+.|+....+ +++ +.+.+| ++|+||||||||||+++|++.+. .|.+.+++... ..
T Consensus 52 l~~l~~~~~~~~~l-----~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~ 119 (278)
T 1iy2_A 52 LKEIVEFLKNPSRF-----HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAA 119 (278)
T ss_dssp HHHHHHHHHCHHHH-----HHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHCHHHH-----HHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHH
Confidence 34455555444444 566 778888 89999999999999999999874 34444432110 01
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCC----CCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.+++|...... +.+++.+++......... ......+.+.+.+ ..|||||+|++.+
T Consensus 120 ~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-----------~~lsgg~~~~~~i------- 180 (278)
T 1iy2_A 120 RVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-----------VEMDGFEKDTAIV------- 180 (278)
T ss_dssp HHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHHH-----------HHHTTCCTTCCEE-------
T ss_pred HHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHHH-----------HHHhCCCCCCCEE-------
Confidence 1334444422111 235666777543221110 0111112222222 2478999999999
Q ss_pred ccEEEEcCcccCCCh
Q 023126 201 HKVVIVDGNYLFLDG 215 (287)
Q Consensus 201 a~~li~d~~~lllDe 215 (287)
+.++..+|.. +|+
T Consensus 181 ~~a~t~~p~~--ld~ 193 (278)
T 1iy2_A 181 VMAATNRPDI--LDP 193 (278)
T ss_dssp EEEEESCTTS--SCH
T ss_pred EEEecCCchh--CCH
Confidence 4444445543 564
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=8.3e-08 Score=80.48 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=40.6
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
..++++.+++. |.. +...++.+++++.+.++..+|+..|. |.+.+.+...+.. ..+.... ...||++
T Consensus 106 ~~vv~~~~~l~--e~~---~~~~~d~vi~l~~~~e~~~~Rl~~R~---~~~~e~~~~r~~~-q~~~~~~----~~~ad~v 172 (206)
T 1jjv_A 106 PYTLFVVPLLI--ENK---LTALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMNS-QVSQQER----LKWADDV 172 (206)
T ss_dssp SEEEEECTTTT--TTT---CGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHH-SCCHHHH----HHHCSEE
T ss_pred CEEEEEechhh--hcC---cHhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHh-cCChHHH----HHhCCEE
Confidence 36667765432 211 34556778899999999998887653 4455544444443 1232222 2368999
Q ss_pred eccCC
Q 023126 282 IKSID 286 (287)
Q Consensus 282 ~~~~~ 286 (287)
+++..
T Consensus 173 Idn~~ 177 (206)
T 1jjv_A 173 INNDA 177 (206)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 98753
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-08 Score=78.75 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|+.++|+||||||||||+++|++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999997
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9e-11 Score=102.15 Aligned_cols=125 Identities=17% Similarity=0.064 Sum_probs=67.8
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------C
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 123 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--------~ 123 (287)
+++++.+.|+....+ +++ +.+.+| ++|+||||||||||+++|++.+. .|.+.+++... .
T Consensus 27 ~l~~l~~~~~~~~~~-----~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~ 94 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRF-----HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGA 94 (254)
T ss_dssp HHHHHHHHHHCHHHH-----HHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHH
T ss_pred HHHHHHHHHHCHHHH-----HHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHH
Confidence 344555555544444 566 788888 89999999999999999999864 34444332110 0
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCC----CCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhcc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
..+..++|...... +.+.+.+++......... ......+.+.+.+. .||||++|++.+++++..
T Consensus 95 ~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~-----------~l~g~~~~~~~i~~a~t~ 162 (254)
T 1ixz_A 95 ARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-----------EMDGFEKDTAIVVMAATN 162 (254)
T ss_dssp HHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHHHH-----------HHHTCCTTCCEEEEEEES
T ss_pred HHHHHHHHHHHhcC-CeEEEehhhhhhhcccCccccccchHHHHHHHHHHH-----------HHhCCCCCCCEEEEEccC
Confidence 11334444422111 235666777443221111 11111122233332 467999999999555444
Q ss_pred Cc
Q 023126 200 QH 201 (287)
Q Consensus 200 ~a 201 (287)
.+
T Consensus 163 ~p 164 (254)
T 1ixz_A 163 RP 164 (254)
T ss_dssp CG
T ss_pred Cc
Confidence 43
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.62 E-value=7e-09 Score=90.59 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCccccCcc-cccc-cccchhhhhhcCcc-ceecC---CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 49 QPVFGKTRS-LVQN-KTSLKVLCSQRREI-PVVEA---RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 49 ~~~~~~~~~-~~~~-~~~~~~v~~~~~~~-~~i~~---GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++++++++ ++.| +...++ +++ +.+.+ |++++|+|++||||||++++|++.+.
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~l-----~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQIL-----KKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -----------------CHHH-----HHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEcceeeEEecCcchhh-----hhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 358999999 9999 666677 888 99999 99999999999999999999999886
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=8.1e-09 Score=83.05 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=48.4
Q ss_pred CCCCCCCCCcccCCchhhh------hhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHH
Q 023126 176 GSVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLD 236 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia------~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~ 236 (287)
.++++.+|||||+||+++| ++++.+|+++++|||+..||+. +++.+.++.. ..+++|||++
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 3567789999999999886 6788999999999999999994 4444555433 2468999985
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-08 Score=103.40 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=67.7
Q ss_pred HHHHhccC---CCCCCCCCCcccCCchhhhhhhccCc--cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCH
Q 023126 168 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL 235 (287)
Q Consensus 168 ~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a--~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~ 235 (287)
.|..++.. .++++.+|||||+||++||.+++..+ +++++|||+..||+ .+++.++.+.+ .+|+|+||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45556632 57788899999999999999999988 59999999999998 34444444433 357999999
Q ss_pred HHHHH--HHh----------hccccCCChHHHHH
Q 023126 236 DTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 236 ~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
+++.. |++ |++++.|+++++..
T Consensus 442 ~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 96644 333 46778888887643
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-08 Score=85.81 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=30.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.. +..++|++++|+|+|||||||++++|++.+.
T Consensus 16 ~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 16 DRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444 5678999999999999999999999999984
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-08 Score=83.40 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=29.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
.+.+|++++|+|||||||||++++|++.+. |+.|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 578999999999999999999999999986 7555
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.9e-07 Score=80.21 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=36.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 134 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~ 134 (287)
.+|++++|+|+|||||||+++.|++.+. +++| ..+.++.+|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G----------~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKH----------KKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTC----------CCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC----------CEEEEEecCcc
Confidence 5789999999999999999999999998 7666 23777888754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-08 Score=83.62 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999884
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.2e-07 Score=77.71 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=42.0
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.++++|.+++.-. .+....+.+++++-+.++..+|+..| |...+.+.+.+... .+. .+....||++
T Consensus 106 ~~vive~~~l~~~-----~~~~~~~~~i~l~~~~e~~~~Rl~~R----~~~~~~~~~~~~~~-~~~----~~~~~~ad~v 171 (204)
T 2if2_A 106 TLFILEASLLVEK-----GTYKNYDKLIVVYAPYEVCKERAIKR----GMSEEDFERRWKKQ-MPI----EEKVKYADYV 171 (204)
T ss_dssp CCEEEECSCSTTT-----TCGGGSSEEEEECCCHHHHHHHHHHT----CCCHHHHHHHHTTS-CCH----HHHGGGCSEE
T ss_pred CEEEEEccccccC-----CchhhCCEEEEEECCHHHHHHHHHHc----CCCHHHHHHHHHhC-CCh----hHHHhcCCEE
Confidence 5677787654321 12234566789999999998888766 44444444444432 222 2334568999
Q ss_pred eccC
Q 023126 282 IKSI 285 (287)
Q Consensus 282 ~~~~ 285 (287)
+++.
T Consensus 172 Id~~ 175 (204)
T 2if2_A 172 IDNS 175 (204)
T ss_dssp CCCS
T ss_pred EECC
Confidence 8764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-09 Score=101.48 Aligned_cols=118 Identities=17% Similarity=0.092 Sum_probs=67.6
Q ss_pred cc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH--
Q 023126 74 EI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA-- 150 (287)
Q Consensus 74 ~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~-- 150 (287)
++ +.++.|++++|+|+||||||||+++|+|..+ ...+ ..+ ......++++.+++.. .+++.+..-+.
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---~i~~-~~f--tTl~p~~G~V~~~~~~----~~~l~DtpGli~~ 218 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---KIAP-YPF--TTLSPNLGVVEVSEEE----RFTLADIPGIIEG 218 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---EECC-CTT--CSSCCEEEEEECSSSC----EEEEEECCCCCCC
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---cccC-ccc--ceecceeeEEEecCcc----eEEEEeccccccc
Confidence 45 7899999999999999999999999999742 1111 000 0112235666665410 12222222110
Q ss_pred -HHhcCCCCCchHHHHHHHHHHhc-----cCC-CCCCCCCCcccCCchhhhhhhccCccEEEE
Q 023126 151 -HARRGAPWTFNPLLLLNCLKNLR-----NQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~l~~l~-----~~~-~~~~~~lSgG~~qrv~ia~al~~~a~~li~ 206 (287)
....++. ..+.+.++... ... ..++.+||+|++|++.++.+++..|.++++
T Consensus 219 a~~~~~L~-----~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 219 ASEGKGLG-----LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp GGGSCCSC-----HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred hhhhhhhh-----HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 0000010 11111111111 011 345558999999999999999889999987
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=6.8e-08 Score=79.68 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=25.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999875
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.3e-08 Score=95.91 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=85.1
Q ss_pred cccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-cccccCCCCC---CceeEEEe
Q 023126 56 RSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKP---PDVATVLP 130 (287)
Q Consensus 56 ~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~-G~i~~~~~~~---~~~i~~v~ 130 (287)
.+..-+|...++ +.+ +.+..|+.++|+||||+|||||+++|+++++ +.. |.+.+.+... ...+.+++
T Consensus 39 ~l~~i~G~~~~l-----~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~~~p 110 (604)
T 3k1j_A 39 LIDQVIGQEHAV-----EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIKTVP 110 (604)
T ss_dssp HHHHCCSCHHHH-----HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEEEEE
T ss_pred ccceEECchhhH-----hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEEEEe
Confidence 344445555555 666 7899999999999999999999999999998 766 4454433221 22355655
Q ss_pred CCCC--------------------CCCcccCCccccHHHHHHhcCC-CCCc---hHHHHHHHHHHhccCCCCCCCCCCcc
Q 023126 131 MDGF--------------------HLYLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPSFDHG 186 (287)
Q Consensus 131 qd~~--------------------~~~~~~ltv~e~i~~~~~~~~~-~~~~---~~~~~~~~l~~l~~~~~~~~~~lSgG 186 (287)
+... .+....+++.+|+... .... +... ......+++..+. ........+|+|
T Consensus 111 ~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~--~~~~~~~~~v~~~~~~~~~L~G~~~-~~~~~~g~~~~g 187 (604)
T 3k1j_A 111 ACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVD--NCGRTKAPFIDATGAHAGALLGDVR-HDPFQSGGLGTP 187 (604)
T ss_dssp TTHHHHHHHHHHHHHHHHTCC-----------CCCEEEEC--CTTCSSCCEEECTTCCHHHHHCEEC-CCCC----CCCC
T ss_pred cchHHHHHHHHHHhhccchhhhhhcccccccccccceeec--cccCCCCCEEEcCCCCHHhcCceEE-echhhcCCcccc
Confidence 4320 0000112222222110 0000 0000 0011122221111 112233578999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~ 226 (287)
++|++..+.....+..+|++|+.-. +++..|..|.+..+
T Consensus 188 ~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 188 AHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp GGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred ccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 9999888766666677888887665 45666666655543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.2e-06 Score=69.22 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+++|+|++||||||+++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999875
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-07 Score=77.92 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=25.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+..++|++++|+|+||||||||+++|++.+.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4567899999999999999999999999874
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-07 Score=77.44 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.5
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
+.+.+|+.++|.||||+|||||+++|++.+. |+.|
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~~g 67 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIY---EKKG 67 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHH---HHSC
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHH---HHcC
Confidence 5678899999999999999999999999997 6665
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-06 Score=74.02 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=37.2
Q ss_pred cCceEEEeCHHHHHHHHhhccccCC--ChHHHHHHHHHhcCcchHH-HHhhcCCCcc-EEeccCC
Q 023126 226 DEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 286 (287)
Q Consensus 226 ~~~i~vtHd~~~~~~rv~gr~v~~G--~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD-~i~~~~~ 286 (287)
+..||++-++++..+|+..+..+.| ...+.+...+......... +..|.+...| ++|++.+
T Consensus 147 ~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~ 211 (233)
T 3r20_A 147 DVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSD 211 (233)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCC
Confidence 3468999999999887775444332 2333333333333333333 6667777666 9998764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=77.69 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 116 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~ 116 (287)
+|++++|+|+||+||||++..|++.+. +..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~ 130 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPL 130 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEE
Confidence 899999999999999999999999998 7666543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.3e-07 Score=77.30 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=26.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999986
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=98.28 E-value=8.9e-06 Score=65.28 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=44.5
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhc---CceEEEeCHHHHHHHHhhcccc-CCC-hHHHHHHHHHhcCcchHHHHhhcC
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAMQRVLKRHIS-TGK-PPDVAKWRIEYNDRPNAELIMKSK 275 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~---~~i~vtHd~~~~~~rv~gr~v~-~G~-~~ev~~~~~~~~~~~~~~~i~~~~ 275 (287)
...+++|+. ......+.+.+... ..|++.-+.+.+.+|+..|... .+. .+++...+...... ...+..
T Consensus 78 ~~~vi~dg~---~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~----~~~~~~ 150 (179)
T 3lw7_A 78 HDLVVFDGV---RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKL----GIGEVI 150 (179)
T ss_dssp CSCEEEECC---CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHH----THHHHH
T ss_pred CCeEEEeCC---CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhcc----ChHhHH
Confidence 456777873 55555566666654 4679999999999888865332 122 33333332111111 133345
Q ss_pred CCccEEeccC
Q 023126 276 KNADLVIKSI 285 (287)
Q Consensus 276 ~~aD~i~~~~ 285 (287)
..||+++++.
T Consensus 151 ~~ad~vId~~ 160 (179)
T 3lw7_A 151 AMADYIITND 160 (179)
T ss_dssp HTCSEEEECC
T ss_pred HhCCEEEECC
Confidence 6789999865
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=81.41 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=25.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHH--HHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEV--VRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L--~G~l~ 106 (287)
-+++|++++|+||||||||||++.| .+.++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 4899999999999999999999955 45554
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.25 E-value=4.4e-07 Score=77.52 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=26.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+++|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999999999994
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.8e-07 Score=88.15 Aligned_cols=34 Identities=32% Similarity=0.334 Sum_probs=32.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
.+++|++++|+|+||||||||+++|++.+. |++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCC
Confidence 578999999999999999999999999998 8876
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.8e-07 Score=74.02 Aligned_cols=62 Identities=11% Similarity=-0.046 Sum_probs=48.3
Q ss_pred CCCCCCCCcccCCchhhhhhhc----cCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHH
Q 023126 177 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTA 238 (287)
Q Consensus 177 ~~~~~~lSgG~~qrv~ia~al~----~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~ 238 (287)
...+..||||||||+++|++++ .+++++++|++...||+ .+++.+.++... .|++||+....
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~ 130 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM 130 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH
Confidence 4556789999999999999996 45799999999999998 344555554432 47899997654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=7.9e-07 Score=72.38 Aligned_cols=28 Identities=39% Similarity=0.639 Sum_probs=25.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|++++|+|+|||||||+++.|++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 5689999999999999999999999874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.6e-07 Score=85.86 Aligned_cols=62 Identities=16% Similarity=0.055 Sum_probs=50.3
Q ss_pred CCCCC-CcccCCchhhhhhhccCc--cEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 179 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 179 ~~~~l-SgG~~qrv~ia~al~~~a--~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
++..| ||||+||+++|++++.++ ++|++|+++..+|. .+.+.|.++.+ .+|+|||+++.+..
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 45577 999999999999999999 99999999999998 34444444432 35799999997755
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.18 E-value=8.6e-07 Score=83.05 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=45.6
Q ss_pred CCCcccCCchhhhhhhc----cCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHH
Q 023126 182 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 182 ~lSgG~~qrv~ia~al~----~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.|||||+|++++|++++ .++.++++|+++..||+. +.+.+.++.. ..|++||+....
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~ 400 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF 400 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH
Confidence 49999999999999998 578999999999999993 4444555433 357899997654
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-06 Score=77.51 Aligned_cols=72 Identities=19% Similarity=0.441 Sum_probs=46.8
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccE
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~ 280 (287)
..+++.|+.+++-. .+...++.+||++.+.+++.+|+..|. |.+.+.+...+... .+..+++ ..||+
T Consensus 181 ~~~vIveg~~l~~~-----~~~~~~d~vI~l~a~~ev~~~Rl~~R~---g~s~e~~~~ri~~q-~~~~~~~----~~AD~ 247 (281)
T 2f6r_A 181 KTLCVIDAAMLLEA-----GWQSMVHEVWTVVIPETEAVRRIVERD---GLSEAAAQSRLQSQ-MSGQQLV----EQSNV 247 (281)
T ss_dssp CCEEEEECTTTTTT-----TGGGGCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHTS-CCHHHHH----HTCSE
T ss_pred CCEEEEEechhhcc-----chHHhCCEEEEEcCCHHHHHHHHHHcC---CCCHHHHHHHHHHc-CChHhhH----hhCCE
Confidence 46889998865422 123456778899999999998888653 44445454555443 3444443 36899
Q ss_pred EeccC
Q 023126 281 VIKSI 285 (287)
Q Consensus 281 i~~~~ 285 (287)
++++.
T Consensus 248 vIdn~ 252 (281)
T 2f6r_A 248 VLSTL 252 (281)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99875
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.17 E-value=8.5e-07 Score=71.91 Aligned_cols=27 Identities=37% Similarity=0.663 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.|++++|+|+|||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999886
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.5e-07 Score=83.24 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=46.5
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
+++..+..+.|+.+.++ +++ +.+.+|.+++|+|++|||||||++.|++.+. +..|++
T Consensus 30 ~ie~~~~~~~~~~~~~~-----~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~~v 87 (341)
T 2p67_A 30 LVESRHPRHQALSTQLL-----DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGLKV 87 (341)
T ss_dssp HHHCCCHHHHHHHHHHH-----HHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTCCE
T ss_pred HhhcCCchhhhHHHHHH-----HhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeE
Confidence 45666777777766555 666 7789999999999999999999999999997 666654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-07 Score=89.67 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=30.6
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCCcccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSF 116 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G-~l~~~~p~~G~i~ 116 (287)
+.+.++..+.|+|.+||||||+++.|.. ++.. ++.|++.
T Consensus 162 ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~--~~p~~v~ 201 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK--AQPEDVR 201 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT--CCTTTEE
T ss_pred EEcccCceEEEECCCCCCHHHHHHHHHHHHHHh--CCCceEE
Confidence 6788899999999999999999999876 3321 4556543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=5.6e-07 Score=77.11 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=26.9
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
...++|++++|.|+||||||||+++|+|.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 56789999999999999999999999985
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.6e-06 Score=69.71 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-.++||.|+.||||||+.+.|+..+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.12 E-value=9.2e-07 Score=81.93 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=33.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHH------------HhcccCCCCcccccCC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVR------------RINKIWPQKASSFDSQ 119 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G------------~l~~~~p~~G~i~~~~ 119 (287)
.+.+|.++||+|+||||||||+++|+| ... |+.|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~---p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID---PEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC---TTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec---ceeeeeeeCC
Confidence 578899999999999999999999999 334 6777766654
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.12 E-value=6.4e-06 Score=77.71 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=69.9
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH-HH--
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA-HA-- 152 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~-~~-- 152 (287)
..+.+|+++.|.|++|+|||||+..+++... +..| ..+.|+..+ ++..+..... ..
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~---~~~g----------~~Vl~~s~E--------~s~~~l~~r~~~~~~ 256 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVA---TKTN----------ENVAIFSLE--------MSAQQLVMRMLCAEG 256 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHH---HHSS----------CCEEEEESS--------SCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhCC----------CcEEEEECC--------CCHHHHHHHHHHHHc
Confidence 4589999999999999999999999999875 4333 125566544 2221111110 00
Q ss_pred -------hcCCCCCchHHHHHHHHHHhccCC--CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCC
Q 023126 153 -------RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (287)
Q Consensus 153 -------~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllD 214 (287)
..+.....+++++.+.+..+.... -...+.+|.++.+..+.......+++++++|...++.+
T Consensus 257 ~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 257 NINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp TCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 111112234455556665554211 11345788887654333322235789999999988874
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6.8e-07 Score=75.77 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=30.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
+.+++|+|++||||||++++|++.+...++++|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999988322278888654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-06 Score=78.60 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=36.1
Q ss_pred cc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 74 EI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 74 ~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
++ +.+.+|++++|+|+||+||||++..|++.+. +..|+|.+
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVll 138 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLI 138 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEE
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEE
Confidence 45 6788999999999999999999999999998 87777654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-06 Score=72.32 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=26.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+...+|++++|+||||||||||++.|.+.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456899999999999999999999999874
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.6e-05 Score=65.05 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356889999999999999999998775
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-06 Score=71.51 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|+|+||||||||++.++|...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 789999999999999999999865
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.3e-06 Score=78.86 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=30.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++ +.+++|++++|+||||||||||+++|+|.+.
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 555 7899999999999999999999999999654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.9e-07 Score=86.33 Aligned_cols=32 Identities=38% Similarity=0.594 Sum_probs=27.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++ +.+.+| +.|+||||+|||||+++|++...
T Consensus 57 ~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 57 HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 555 677888 89999999999999999999864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4.6e-06 Score=68.17 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=25.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|++++|.|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999986
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-06 Score=83.08 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=44.8
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~ 119 (287)
+...+++...++....+ ..+ +.+ +|++++|+||||+|||||+++|++.+. +..|.+..++
T Consensus 83 i~G~~~vk~~i~~~~~l-----~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~i~~~~ 143 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAV-----QKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVRISLGG 143 (543)
T ss_dssp CSSCHHHHHHHHHHHHH-----HHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEEECCCC
T ss_pred hccHHHHHHHHHHHHHH-----HHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEecc
Confidence 44455555555544444 444 444 899999999999999999999999998 8878776655
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.9e-06 Score=75.91 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=31.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
.++.+++|+|++|||||||++.|.|.+. ++.|++.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCeEEE
Confidence 3478999999999999999999999988 77776543
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-05 Score=65.46 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998775
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.1e-06 Score=72.28 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=31.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
..+.+|.++.|.|++||||||+++.|++.+. |..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccC
Confidence 5678899999999999999999999999987 6655
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.3e-05 Score=64.14 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=23.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+.+.+| +.+|+|||||||||++.+|.-.+
T Consensus 19 i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 19 VEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 344444 88999999999999999998665
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=5.1e-06 Score=68.90 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+||||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=97.83 E-value=6.1e-06 Score=74.88 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4789999999999999999999875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=66.14 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=28.1
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
....+|.++.|+|++||||||+++.|+..+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999987
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.3e-05 Score=66.94 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=26.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
...+|.+++|+||+|||||||++.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467899999999999999999999998774
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.73 E-value=1.1e-05 Score=75.38 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=29.1
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 112 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~ 112 (287)
+.+.+|++++|+||||||||||+++|.+++. |.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~---~~~ 54 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG---VRS 54 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT---C--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc---ccc
Confidence 3567799999999999999999999999987 654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.7e-05 Score=67.55 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=24.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+.+|++++|+|+||||||||+..++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999976555443
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.64 E-value=4e-05 Score=65.60 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=27.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+|.++.|.|++||||||+++.|+..+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999999999997
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.6e-05 Score=62.85 Aligned_cols=28 Identities=36% Similarity=0.652 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|.+++|+|++||||||+++.|+..+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999998664
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.59 E-value=3.9e-05 Score=70.63 Aligned_cols=56 Identities=14% Similarity=0.043 Sum_probs=41.9
Q ss_pred ccccCcccccccccchhhh-----------hhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 51 VFGKTRSLVQNKTSLKVLC-----------SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~-----------~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+.+++++..|......+. +..|..+.+.+|+.++|+||+|+|||||++.|+....
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4667788887765332222 1113338899999999999999999999999999875
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.57 E-value=5.2e-05 Score=70.86 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
+|++++++|+|||||||++..|++.+. +..|++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~V 129 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRP 129 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeE
Confidence 899999999999999999999999998 766554
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=4.6e-05 Score=65.15 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-.+|.+++|+|++||||||+++.|++.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999999999765
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.56 E-value=3.6e-05 Score=70.35 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=30.9
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
-+.+|+++.|.||+|||||||+..++.... +..|.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~ 91 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGV 91 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCe
Confidence 388999999999999999999999999887 65554
|
| >4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0004 Score=58.63 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=48.5
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccE
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~ 280 (287)
..++++|-++++=. ..+...++.+|+|+.+.+...+|+..|. |.+.+.+.+++.. ..+.++ ..+.||+
T Consensus 112 ~~~vv~d~pLL~E~----~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---g~s~eea~~ri~~-Q~~~ee----k~~~AD~ 179 (210)
T 4i1u_A 112 GPYVIFVVPLLVES----RNWKARCDRVLVVDCPVDTQIARVMQRN---GFTREQVEAIIAR-QATREA----RLAAADD 179 (210)
T ss_dssp SSSEEEECTTCTTC----HHHHHHCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHH-SCCHHH----HHHTCSE
T ss_pred CCEEEEEEeccccc----CCccccCCeEEEEECCHHHHHHHHHhcC---CCCHHHHHHHHHH-cCChHH----HHHhCCE
Confidence 34567777765421 2345678889999999999998888654 5566655555442 234333 3478999
Q ss_pred EeccC
Q 023126 281 VIKSI 285 (287)
Q Consensus 281 i~~~~ 285 (287)
||+|.
T Consensus 180 VIdN~ 184 (210)
T 4i1u_A 180 VIVND 184 (210)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99876
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.55 E-value=2.3e-05 Score=71.90 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=44.4
Q ss_pred CCCCCCcccCCchh------hhhhhccC-ccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHH
Q 023126 179 YAPSFDHGVGDPVE------DDILVGLQ-HKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDT 237 (287)
Q Consensus 179 ~~~~lSgG~~qrv~------ia~al~~~-a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~ 237 (287)
++..|||||+||++ +|.++... ++++++|+++..+|+. +++.+.++.. .++++||+++.
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~ 348 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH
Confidence 34589999999985 45667778 9999999999999984 3444444322 35789999864
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.51 E-value=4.4e-05 Score=61.81 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=5.9e-05 Score=60.51 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.50 E-value=3.4e-05 Score=69.62 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=32.0
Q ss_pred Ccc-ceecCCeE--EEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 73 REI-PVVEARHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 73 ~~~-~~i~~Gei--vgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
+.+ ..++.|++ +.|.||+|+||||+++++++.+. +..+.
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~---~~~~~ 76 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY---GKNYS 76 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH---TTSHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc---CCCcc
Confidence 445 56778887 99999999999999999999986 55443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=6.2e-05 Score=61.82 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+...+|.+++|+|++||||||+++.|+..
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56678899999999999999999999987
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.49 E-value=4.1e-05 Score=68.23 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=30.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
+..+ |++++++|+||+||||++..|++.+. +..++
T Consensus 94 ~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~ 128 (297)
T 1j8m_F 94 PDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFK 128 (297)
T ss_dssp CSSS-SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCC
T ss_pred cCCC-CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCe
Confidence 5555 99999999999999999999999997 65544
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=8.5e-05 Score=62.31 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+.+ .+.+|+|||||||||++.+|.-.+.
T Consensus 19 i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 19 VEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444 4889999999999999999987765
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.46 E-value=5.9e-05 Score=68.43 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=27.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
--+.+|+++.|.|++|+|||||+..++....
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999888764
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.45 E-value=9.6e-05 Score=64.12 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.|+||+|||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999999775
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.43 E-value=6.9e-05 Score=64.89 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=29.1
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+......+.++.|+|++||||||+++.|+..+.
T Consensus 24 ~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 24 RGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp TTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3344577889999999999999999999999874
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.43 E-value=7.5e-05 Score=61.27 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=23.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5789999999999999999999875
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=9.5e-05 Score=59.86 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56889999999999999999999875
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0032 Score=56.94 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.1
Q ss_pred cCCe--EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARH--IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~Ge--ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+. .+.|.||+|+|||||++.+++.+.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456 899999999999999999999986
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.37 E-value=3.8e-05 Score=73.57 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=29.1
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++ +.+.+| +.+|+|+||||||||+.+|..++.
T Consensus 52 ~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp SCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred eeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 556 788888 999999999999999999988853
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=7.7e-05 Score=69.03 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.9
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+..|..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4677888999999999999999999987
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=59.48 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|.++.|.|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 66899999999999999999998774
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=9.4e-05 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=60.03 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999875
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00011 Score=59.49 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999999876
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00015 Score=59.34 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.++.|.|++||||||+++.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999998764
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00014 Score=66.30 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=27.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHH--HhcccCCCCcccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSF 116 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G--~l~~~~p~~G~i~ 116 (287)
+++ +.+. .++|+|++|||||||++.|.| +++ +.+|.+.
T Consensus 28 ~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp---~~~~~vT 68 (360)
T 3t34_A 28 PTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP---RGSGIVT 68 (360)
T ss_dssp ----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC---CCSSSCC
T ss_pred ccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC---CCCCccc
Confidence 444 4554 889999999999999999999 555 5556543
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00017 Score=60.64 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999998
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00022 Score=59.07 Aligned_cols=27 Identities=26% Similarity=0.387 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.+++|.|+.||||||+++.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999885
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00026 Score=63.39 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=26.6
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
--+.+|+++.|.|++|+|||||+..++...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999998888654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00015 Score=67.92 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=25.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.+++++|+|||||||++..|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999997
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=63.09 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=26.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.....|.++.|.||+||||||+++.|+..+
T Consensus 28 ~~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 28 KAVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345668899999999999999999998866
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00015 Score=66.03 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+.+|+++.|.|+||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988887664
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=59.24 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|++||||||+++.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999999875
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=7.7e-05 Score=68.22 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=31.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++.++...++.+.+. ++. +. ++|+|++|+|||||++.|.+...
T Consensus 17 ~v~~~~l~~~~~~k~~~-----~~~~~~------I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVK-----KGFEFT------LMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHHHTHHHH-----HCCEEC------EEECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHhCCeeec-----CCCCEE------EEEEcCCCCCHHHHHHHHhCCCC
Confidence 45667777777665555 555 54 49999999999999999987644
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00024 Score=57.93 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.+++|.|++||||||+++.|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998765
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=58.90 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=42.3
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccE
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~ 280 (287)
.++++.|.++++.+ . +....+.+++++.+.+...+|+..|. |...+.+...+.. ..+.+. ....||+
T Consensus 106 ~~~vi~d~~~l~~~-~----~~~~~d~~i~l~~~~e~~~~R~~~R~---~~~~~~~~~~i~~-~~~~~~----~~~~ad~ 172 (203)
T 1uf9_A 106 APLVFLEIPLLFEK-G----WEGRLHGTLLVAAPLEERVRRVMARS---GLSREEVLARERA-QMPEEE----KRKRATW 172 (203)
T ss_dssp CSEEEEECTTTTTT-T----CGGGSSEEEEECCCHHHHHHHHHTTT---CCTTHHHHHHHTT-SCCHHH----HHHHCSE
T ss_pred CCEEEEEecceecc-C----chhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHH-CCChhH----HHHhCCE
Confidence 57888898765443 1 22345667899999999888887552 3333333344433 222222 2345788
Q ss_pred EeccC
Q 023126 281 VIKSI 285 (287)
Q Consensus 281 i~~~~ 285 (287)
++++.
T Consensus 173 vId~~ 177 (203)
T 1uf9_A 173 VLENT 177 (203)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 88764
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=58.39 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.+++|.|+.||||||+++.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677999999999999999999998775
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00017 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|++|+|||||++.|+|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=7.9e-05 Score=62.14 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00015 Score=64.54 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+.+++|+|++|+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999864
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00023 Score=58.77 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+|.+++|.|+.||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999865
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=57.99 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999999885
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00022 Score=58.01 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=25.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
...+.++.|.|++||||||+++.|+..+.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 34567889999999999999999998765
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00024 Score=59.07 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+|.+++|.|+.||||||+++.|+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999998765
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00025 Score=57.15 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G 103 (287)
.++.|.|++||||||+++.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999997
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00015 Score=59.06 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999854
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00028 Score=58.70 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.5
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+|.+++|.|+.||||||+++.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999998775
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=58.55 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|+||||||||||++.|....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987653
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00022 Score=58.59 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+..+.+++|.|+.||||||+++.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45567899999999999999999998775
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0011 Score=61.72 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=24.5
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-....++.|+|++||||||+++.|+..+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34568999999999999999999987554
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00031 Score=69.29 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=31.1
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
+.++++..++|+|++|+|||||++.|++.... .+..|+|
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V 42 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV 42 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee
Confidence 35678999999999999999999999988761 1266776
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00024 Score=66.50 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+||||||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 389999999999999999999975
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00032 Score=57.16 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|.|++||||||+++.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999875
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00043 Score=58.18 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=24.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++|-++.|+|+.||||||+++.|+..+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999998775
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00026 Score=57.37 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=19.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.++.|.|++||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999998765
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00034 Score=59.63 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 689999999999999999999765
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00049 Score=55.18 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=23.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998775
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0005 Score=57.42 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988765
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00056 Score=58.86 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+.|.||+|+|||||++.|++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 388999999999999999999875
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0006 Score=56.39 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
....+++|.|+.||||||+++.|+..+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999997664
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00061 Score=56.37 Aligned_cols=28 Identities=39% Similarity=0.629 Sum_probs=24.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.+++|.|+.||||||+++.|+..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456899999999999999999998775
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00047 Score=63.40 Aligned_cols=35 Identities=26% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
.+..++|+|++|||||||++.|++.+. +..+.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCEEEE
Confidence 566789999999999999999999887 66666544
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0005 Score=60.92 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=27.1
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 467888999999999999999999999764
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00047 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|.|+.||||||+++.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998775
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00056 Score=55.64 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+++|.|+.||||||+++.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998765
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00056 Score=55.76 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00064 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998775
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0011 Score=59.56 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998775
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00055 Score=57.89 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=23.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.++.|.|+.||||||+++.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999998764
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00061 Score=56.99 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987664
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00071 Score=59.62 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=26.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
...+.|.||+|+||||+++.|++.+. +..+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~ 77 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF---DTEEA 77 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH---SCGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc---CCCcc
Confidence 46899999999999999999999987 55553
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00055 Score=57.60 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.++.|+|++||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999998775
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00084 Score=57.63 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=25.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999998765
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00049 Score=59.99 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|++|||||||++.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999975
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0014 Score=58.68 Aligned_cols=26 Identities=27% Similarity=0.650 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999998664
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0008 Score=55.05 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=20.6
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+++ +..++. .++|+|++|+|||||++.+.+-
T Consensus 15 ~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 15 ASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 444 444444 6789999999999999999983
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.001 Score=57.66 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.++.|.|++||||||+++.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998753
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.001 Score=60.83 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
|..++|+|.+|+|||||++.|.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999983
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00058 Score=62.47 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=21.2
Q ss_pred cCCeE-EEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHI-VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~Gei-vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|-. ++|+|++|||||||++.|+|...
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 34444 99999999999999999998653
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0024 Score=57.07 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..++.|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999998764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.001 Score=54.09 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.-.++|+|+.|||||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999854
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00089 Score=61.20 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=22.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
+.+.+ -+..|.|+|||||||++.+|.=
T Consensus 21 i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 21 IKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred EecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 44444 4788999999999999999985
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0023 Score=57.87 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998664
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0012 Score=55.85 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|.|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0012 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999999853
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=55.34 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|-.+.|.|+.||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998775
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0014 Score=59.25 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=26.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+++|+++.|.|++|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999999986
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0016 Score=55.18 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=27.2
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.+..++.|+||.||||+|.++.|+..+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3466778999999999999999999998876
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57999999999999999998753
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00093 Score=56.87 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=24.6
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
..+..|+.+.|.||+||||||++..+...
T Consensus 71 ~~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 71 EAISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 45778999999999999999988776543
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57899999999999999998743
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0028 Score=58.65 Aligned_cols=26 Identities=31% Similarity=0.690 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+++|+||+|||||||+..|+..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999998775
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0016 Score=54.61 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999999999875
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0015 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999999864
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=54.94 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999998764
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0014 Score=54.84 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0015 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999999753
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0018 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.|.||+|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999875
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0016 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|||||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998853
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=54.50 Aligned_cols=32 Identities=34% Similarity=0.324 Sum_probs=25.2
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
...+..-.|..+.|+||+|||||||+..|+..
T Consensus 26 Ha~~v~~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 26 HGVLVDIYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ESEEEEETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eEEEEEECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 33333456788999999999999999988754
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0016 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0017 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0019 Score=54.81 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+..+.|.|+.||||||+++.|+..+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999999998875
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0015 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
++.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557899999999999999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0017 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998743
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=51.62 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998743
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0018 Score=56.81 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++..+.|.||+|+|||||++.+++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 467889999999999999999999775
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999885
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.002 Score=54.36 Aligned_cols=27 Identities=41% Similarity=0.565 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.++.|.|+.||||||+++.|+..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999886
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|++|+|||||++.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=59.01 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5577899999999999999999999886
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0038 Score=58.46 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.++.++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999886
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.002 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0081 Score=56.16 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=27.1
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+.+|+++.|.|++|+|||||+..++....
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998887664
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.002 Score=52.24 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999999853
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=61.65 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=24.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+.+| +.|.||+|+|||||++.|++...
T Consensus 46 ~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 46 ARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 445566 77999999999999999999875
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0021 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999999753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0025 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999999874
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.002 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67999999999999999999843
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=51.50 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999997643
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0021 Score=51.82 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999974
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=55.46 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=22.9
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+|.++.|.|++||||||+++.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999885
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.002 Score=56.66 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++.|.|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999999743
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0022 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.002 Score=55.25 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999886
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0011 Score=52.21 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 57899999999999999997643
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0012 Score=62.21 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=30.3
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|....+-+|+.++|+|++|+|||||++.|+....
T Consensus 143 D~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 143 DLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5557788999999999999999999999998765
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0022 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++++|+.|+|||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 67999999999999999999753
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0011 Score=53.64 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999875
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0015 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998753
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0023 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 368999999999999999999743
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0023 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999854
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0021 Score=51.05 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6799999999999999999874
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0024 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999877764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0016 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
++.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4556889999999999999998874
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.003 Score=50.55 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=24.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999998875
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0024 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 679999999999999999998654
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0026 Score=54.24 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.+++|.|..||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998874
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0015 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=50.96 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0017 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998743
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0027 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0011 Score=54.54 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=23.7
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
+++ +..++. .++|+|++|+|||||++.+.+
T Consensus 17 ~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 17 QFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 444 555555 468999999999999999976
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0031 Score=53.67 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=25.7
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-.+|.++.|.|++||||||+++.|...+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999999999886
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0026 Score=53.68 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.++.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999886
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0024 Score=57.15 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=26.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+++|+++.|.|++|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 48899999999999999999999998764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0028 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998854
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0027 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999854
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0025 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0025 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
--+++|+|+.|||||||++.|++.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999998764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0017 Score=58.99 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
...-.++|+|++|+|||||++.|+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998854
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0028 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0029 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999875
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=58.52 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=56.99 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|.+|+|||||++.|.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999853
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0031 Score=52.89 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|+||.||||+|.++.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 577999999999999999999876
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0031 Score=53.37 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=25.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999999886
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=51.34 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999885
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0029 Score=51.22 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998854
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.003 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999853
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0032 Score=54.69 Aligned_cols=29 Identities=41% Similarity=0.628 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.++.-+.|.||+|+|||||++.++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46677789999999999999999999875
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0028 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0032 Score=50.45 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.003 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999884
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0034 Score=50.85 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0026 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999998875
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0024 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|||||||++.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0024 Score=55.31 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0034 Score=51.38 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|.+|+|||||++.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999853
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0032 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6789999999999999999853
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0031 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34478999999999999999999854
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0032 Score=51.18 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999999865
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0036 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67999999999999999998743
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0027 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.|+|+|..|+|||||++.|.|.-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67999999999999999999853
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0038 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0029 Score=56.24 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..+.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 345788999999999999999999885
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0034 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 67999999999999999988753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0038 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998743
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.004 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999885
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0039 Score=50.68 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998853
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.004 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998853
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.004 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 478999999999999999998743
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0019 Score=55.91 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=24.4
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..++.+++|.|+.||||||+++.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45778999999999999999999988764
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0034 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..|+|||||++.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0038 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998853
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0035 Score=51.31 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0039 Score=49.89 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3355678999999999999999998875
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0043 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=21.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
...-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 344578999999999999999998743
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0032 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.002 Score=52.90 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997643
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0046 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 68999999999999999988743
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0042 Score=55.35 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=25.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999988864
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0036 Score=55.94 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
.|.-+.|.|+||+|||||+..|.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 688999999999999999999887
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0033 Score=54.90 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0037 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=21.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
++.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999998863
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0042 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999843
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0046 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367999999999999999998754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0043 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0025 Score=55.50 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|++|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0058 Score=51.13 Aligned_cols=26 Identities=35% Similarity=0.663 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|.+++|=|..||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999999885
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0052 Score=52.48 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+||+|+.||||||+++.|+..+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998775
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0034 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|||||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999863
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0058 Score=52.16 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=24.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
....-+.|.||+|+|||||++.++..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455678999999999999999999775
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0045 Score=56.34 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=26.2
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+|+++.|.|++|+|||||+..++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988887654
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.005 Score=50.35 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=23.7
Q ss_pred cceecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 75 IPVVEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 75 ~~~i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
....-.|.-+.|.|+||+|||||+..|..
T Consensus 10 s~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 33445678889999999999999988775
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0033 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999999874
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0046 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
--.++|+|..|+|||||++.++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999988754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0036 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0045 Score=57.90 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+..+.|.||+|+|||||++.|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999875
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0049 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999853
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0037 Score=52.53 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999875
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.83 E-value=0.005 Score=50.53 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 67999999999999999999843
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0032 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998643
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0017 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.|.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998853
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0049 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.||+|+||||+++.+++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999999874
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0055 Score=49.72 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999875
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0026 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998765
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0036 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999998874
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0047 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6799999999999999999864
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0065 Score=51.30 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVV 102 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~ 102 (287)
-+.+|+++.|.|++|+|||||+--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 38999999999999999999986654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0033 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=9.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0046 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.|.|.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.005 Score=50.29 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3447899999999999999998864
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0043 Score=58.02 Aligned_cols=25 Identities=40% Similarity=0.622 Sum_probs=23.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+|++|+||||++..|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999885
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0047 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0065 Score=49.94 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999874
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0084 Score=54.35 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
....+++|+|+.|+|||||++.|++.+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999998874
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0051 Score=50.26 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|+|..|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999998887543
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0052 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++++|+.|+|||||++.|.|..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999753
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0048 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0051 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..++++|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5889999999999999999998654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0069 Score=49.93 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=20.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3447899999999999999998863
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0079 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998853
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0086 Score=49.82 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0067 Score=50.86 Aligned_cols=22 Identities=45% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0088 Score=57.02 Aligned_cols=29 Identities=7% Similarity=0.082 Sum_probs=26.7
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999986
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0092 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=24.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++..+.|.||.|+|||||++.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999999875
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0033 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=4.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998876
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0092 Score=46.64 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.-+.|.||+|+|||++++.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3455678999999999999999987653
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0094 Score=52.49 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=24.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++...+.|.||.|+|||+|++.|+..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44456778889999999999999999875
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0096 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999998763
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0094 Score=48.59 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999998864
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0088 Score=49.26 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0088 Score=53.76 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5567889999999999999999998874
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0044 Score=53.39 Aligned_cols=23 Identities=48% Similarity=0.745 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|.||+|+|||||++.|+..+.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 67899999999999999999875
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.011 Score=57.16 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|.++.|.|.+||||||+++.|+..+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999999998875
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0031 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999988853
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.012 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=20.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+|.++.|.|+.||||||++.-++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998444433
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.012 Score=52.54 Aligned_cols=28 Identities=39% Similarity=0.490 Sum_probs=24.2
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
..+..-+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3455678899999999999999999977
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0057 Score=57.39 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|.+|+|||||++.|.|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998853
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.011 Score=53.50 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++..+.|.||+|+||||+++.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 455688999999999999999998774
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.013 Score=57.19 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.++.|.|.+||||||+++.|+..+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999999873
|
| >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0097 Score=54.77 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=30.2
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|..+.+-+|+..+|+|++|+|||||+..|+....
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 5557899999999999999999999999888654
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.013 Score=48.67 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=23.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+++|.|+.||||||+.+.|+..+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999886
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.015 Score=55.41 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=23.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..+++|+|++|||||||+..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999998775
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.014 Score=50.99 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.-+.|.||.|+|||||++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45677999999999999999999875
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0095 Score=59.71 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=74.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
..+..|+.+.|+||+||||||++.++.+... +..|. + ..+.++. +. . .-+.+.........+
T Consensus 104 ~~l~~~~~vii~gpTGSGKTtllp~ll~~~~---~~~~~----g----~~ilvl~--P~----r-~La~q~~~~l~~~~~ 165 (773)
T 2xau_A 104 KLYQNNQIMVFVGETGSGKTTQIPQFVLFDE---MPHLE----N----TQVACTQ--PR----R-VAAMSVAQRVAEEMD 165 (773)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHHHHHH---CGGGG----T----CEEEEEE--SC----H-HHHHHHHHHHHHHTT
T ss_pred HHHhCCCeEEEECCCCCCHHHHHHHHHHHhc---cccCC----C----ceEEecC--ch----H-HHHHHHHHHHHHHhC
Confidence 3477889999999999999999998877654 43320 0 1122221 10 0 000000000001111
Q ss_pred CCCCchHHHHHHHHHHhc--------cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCccc-CCCh----hhHHHHH
Q 023126 156 APWTFNPLLLLNCLKNLR--------NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDG----GVWKDVS 222 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~--------~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~l-llDe----~~~~~l~ 222 (287)
..-. ..++ ...+..+..+|.|+.+|..++.....+.+++|+||... .+|. .+++.+.
T Consensus 166 ~~v~----------~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 166 VKLG----------EEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp CCBT----------TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH
T ss_pred Cchh----------heecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHH
Confidence 0000 0011 01223444678899999888877888899999999985 6664 3334444
Q ss_pred HhhcC--ce-E-EEeCHHHHHH
Q 023126 223 SMFDE--KW-F-IEVDLDTAMQ 240 (287)
Q Consensus 223 ~~~~~--~i-~-vtHd~~~~~~ 240 (287)
..... .| + .||+.+.+..
T Consensus 236 ~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 236 KRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp HHCTTCEEEEEESCSCCHHHHH
T ss_pred HhCCCceEEEEeccccHHHHHH
Confidence 33322 23 3 3788765543
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.017 Score=49.92 Aligned_cols=28 Identities=39% Similarity=0.555 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..-+.|.||.|+|||||++.++....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456788999999999999999998764
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.01 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445789999999999999998854
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.01 Score=55.84 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=24.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
++.|-.++|+|+.|+|||||++.|.|..
T Consensus 221 ~r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 221 LRTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4566779999999999999999999974
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.013 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+-.++|+|.+|+|||||++.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34578999999999999999999864
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.015 Score=52.20 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|..+.|.||.|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999885
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=48.93 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=24.7
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+...+.|.||.|+||||++.+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44455689999999999999999999875
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.95 E-value=0.01 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHH-HHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAE-VVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~-L~G~l 105 (287)
.++|+|+.|+|||||++. +.|..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999998 66654
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.028 Score=52.42 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+..+++++|++|+||||++-.|+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998886
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.018 Score=52.15 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..-+.|.||.|+|||||++.|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456789999999999999999998764
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.01 Score=55.67 Aligned_cols=24 Identities=50% Similarity=0.724 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.||+|+|||||++.|+..+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 488999999999999999999875
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.91 E-value=0.018 Score=51.17 Aligned_cols=28 Identities=43% Similarity=0.583 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..-+.|.||.|+|||||++.++..+.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3455688999999999999999999875
|
| >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.019 Score=55.29 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|.++.|.|.+||||||+++.|...+.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999998774
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.016 Score=51.93 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=24.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.+|.++.|.||.|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4677888899999999999999998864
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.02 Score=54.71 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
...++.++|.+||||||+.+.|+..+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446889999999999999999988764
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.019 Score=51.81 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..+.|.||.|+|||||++.++..+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 355889999999999999999998874
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.015 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998875
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.021 Score=50.72 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.-+.|.||.|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999998763
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.021 Score=53.68 Aligned_cols=28 Identities=21% Similarity=0.512 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
....++.++|.+||||||+++.|+..+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445789999999999999999987653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.0052 Score=50.45 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 346899999999999999888753
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.02 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|=|.-||||||.++.|+..+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999886
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.016 Score=52.84 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=25.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 37899999999999999999998777654
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.022 Score=53.03 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=25.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+..=+.|.||.|+|||+|+++|++.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 55556688999999999999999999886
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.025 Score=48.25 Aligned_cols=27 Identities=41% Similarity=0.554 Sum_probs=23.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+.-++.+.|..|+|||||+..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 445688999999999999999999776
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.68 E-value=0.013 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|.+++|||||++.|.|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 287 | ||||
| d1sq5a_ | 308 | c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi | 1e-24 | |
| d1uj2a_ | 213 | c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho | 2e-19 | |
| d1a7ja_ | 288 | c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph | 4e-19 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 2e-14 | |
| d1odfa_ | 286 | c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker' | 1e-12 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 7e-05 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 2e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.002 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.002 | |
| d1ly1a_ | 152 | c.37.1.1 (A:) Polynucleotide kinase, kinase domain | 0.003 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 0.003 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 0.003 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.003 | |
| d1bifa1 | 213 | c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct | 0.003 |
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Score = 98.2 bits (244), Expect = 1e-24
Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 44/229 (19%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
I+ +AG GKST A + +++ + V ++ DGF L
Sbjct: 82 IISIAGSVAVGKSTTARVLQALLSRW-----------PEHRRVE-LITTDGFLHPNQVLK 129
Query: 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQH 201
+ ++G P +++ L+ + +L++ +V AP + H + D + D +Q
Sbjct: 130 E----RGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQP 185
Query: 202 KVVIVDGNYLFLDGGVWKD------VSSMFDEKWFIEVDLDTAMQRVLKRHIST--GKPP 253
++I++G + G + VS D +++ D + R + G
Sbjct: 186 DILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFT 245
Query: 254 DVAKWRIEYND------------------RPNAEL-IMKSKKNADLVIK 283
D + Y N + I+ +++ A L++
Sbjct: 246 DPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILT 294
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.9 bits (201), Expect = 2e-19
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
++G++G +GKS++ A++V+ + + +L D F+ L+
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD---------YRQKQVVILSQDSFYRVLTSEQ 54
Query: 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202
+ K P F+ L+L LK + +V P +D E+ + V
Sbjct: 55 KAKALKGQFN-FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 112
Query: 203 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIST-GKPPDVAKWRIE 261
VV+ +G F ++V +F K F++ D DT + R + R IS G+ + +
Sbjct: 113 VVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYI 168
Query: 262 YNDRPNAEL-IMKSKKNADLVIKS 284
+P E + +KK AD++I
Sbjct: 169 TFVKPAFEEFCLPTKKYADVIIPR 192
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 82.7 bits (204), Expect = 4e-19
Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 32/219 (14%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQL 141
I+ + G GAG ST+ ++I+ ++ A + D FH + + +
Sbjct: 6 IISVTGSSGAGTSTVK----HTFDQIFRREGVK----------AVSIEGDAFHRFNRADM 51
Query: 142 DAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 197
A D + A + L + G ++ H + +
Sbjct: 52 KAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAP 111
Query: 198 GLQ---------HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS 248
G ++ +G + + +++ + D K + ++ + + R +
Sbjct: 112 GNFTDWRDFDSDSHLLFYEGLHGAVVNS-EVNIAGLADLKIGVVPVINLEWIQKIHRDRA 170
Query: 249 T-GKPPDVAKWRIEYNDRPNAEL-IMKSKKNADLVIKSI 285
T G + I I+ D+ + +
Sbjct: 171 TRGYTTEAVTDVIL-RRMHAYVHCIVPQFSQTDINFQRV 208
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 68.6 bits (166), Expect = 2e-14
Identities = 29/221 (13%), Positives = 64/221 (28%), Gaps = 27/221 (12%)
Query: 62 KTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121
+ + LC I R ++G+ G +GK+TLA ++ + + +
Sbjct: 4 RDRIDFLCKTILAIKT-AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV--------- 53
Query: 122 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAP 181
V MD + ++ + + L + L+ + P
Sbjct: 54 -----CVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVE--WLTHQLFRQLKASHQLTLP 106
Query: 182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 241
+DH + + + ++I K+ FD +++ + R
Sbjct: 107 FYDHETDTHSKRTVYLSDSDMIMIEGVFLQ------RKEWRPFFDFVVYLDCPREIRFAR 160
Query: 242 VLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 282
+ + R + K AD+V
Sbjct: 161 ENDQV---KQNIQKFINRYW-KAEDYYLETEEPIKRADVVF 197
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.8 bits (157), Expect = 1e-12
Identities = 37/212 (17%), Positives = 67/212 (31%), Gaps = 28/212 (13%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 142
+ +GP G+GKS + ++ + + + + S +D F+L
Sbjct: 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKS-----------IGYASIDDFYLTHEDQL 77
Query: 143 AMEDPKEAHA---RRGAPWTFNPLLLLNCLKNLRNQGS----------VYAPSFDHGVGD 189
+ + + + RG P T + LL L + N Y S G GD
Sbjct: 78 KLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 137
Query: 190 PVEDDILVGLQHKVVIVDGNYLF----LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKR 245
+ L + I++G +L L G D+ + ++ + +
Sbjct: 138 RCPTGQKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPE 197
Query: 246 HISTGKPPDVAKWRIEYNDRPNAELIMKSKKN 277
S G Y R E + SK
Sbjct: 198 IKSLGIVFTTDNINNVYGWRLQQEHELISKVG 229
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 40.4 bits (93), Expect = 7e-05
Identities = 21/203 (10%), Positives = 41/203 (20%), Gaps = 46/203 (22%)
Query: 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLS 139
++ L G AGKS + + + P+ +F + + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAEGGIEFD 57
Query: 140 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 199
+ E A GA + + + D
Sbjct: 58 ADGGVSIGPEFRALEGAWAEGVVAMARAGARII----------IDDVFLGGAAAQERW-- 105
Query: 200 QHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWR 259
D V + D A R R + +A +
Sbjct: 106 ---------RSFVGDLDVLWV---------GVRCDGAVAEGRETAR---GDRVAGMAAKQ 144
Query: 260 IEYNDRPNAELIMKSKKNADLVI 282
D+ +
Sbjct: 145 AYVVHEG---------VEYDVEV 158
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIW 109
HI L G G+GKS +A+EV +++ +
Sbjct: 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAF 34
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 36.1 bits (82), Expect = 0.002
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 83 IVGLAGPPGAGKSTLAAEVVRRINK 107
++ A G GK+TL +++ +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCA 28
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 36.2 bits (82), Expect = 0.002
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106
+ + + GP G GKST + +++
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLD 27
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Score = 35.5 bits (80), Expect = 0.003
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIW 109
+ I+ G PG+GKST A E + + +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 36.4 bits (83), Expect = 0.003
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115
VG+ G PG GKST + + + A
Sbjct: 52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 85
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 36.4 bits (83), Expect = 0.003
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 82 HIVGLAGPPGAGKSTLAAEVVRRINKIW 109
+G+ G PGAGKST + +
Sbjct: 55 LRLGVTGTPGAGKSTFLEAFGMLLIREG 82
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.003
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 80 ARHIVGLAGPPGAGKSTLAAEVVRRINK 107
ARH+ L GPPG GK+TL + +
Sbjct: 1 ARHV-FLTGPPGVGKTTLIHKASEVLKS 27
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.7 bits (81), Expect = 0.003
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 82 HIVGLAGPPGAGKSTLAAEVVRRINKI 108
++ + G P GK+ ++ ++ R +N I
Sbjct: 3 TLIVMVGLPARGKTYISKKLTRYLNFI 29
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 287 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.97 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.97 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 99.74 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 99.65 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 99.61 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.24 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.18 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 99.11 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 99.05 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 98.01 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.88 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 97.85 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.8 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.78 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.76 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.74 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.69 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.67 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.65 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.63 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.62 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.54 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.53 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.52 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.5 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.5 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.47 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.45 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.45 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.43 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.42 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.4 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.39 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.37 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.31 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.28 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.23 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.22 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.21 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.2 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.2 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.2 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.19 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.19 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.19 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.17 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.17 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.17 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.15 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.13 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.11 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.1 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.09 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.09 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.09 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.08 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.08 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.07 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.05 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.04 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.01 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.0 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.97 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.96 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.95 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.94 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.93 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.93 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.92 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.92 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.9 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.9 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.89 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.88 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.88 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.87 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.87 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.86 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.85 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.82 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.81 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.8 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.79 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.77 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.77 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.7 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.68 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.65 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.6 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.56 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.52 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.5 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.49 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.48 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.47 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.43 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.41 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.41 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.4 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.34 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.33 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.33 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.31 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.31 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.31 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.29 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.27 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.27 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.24 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.24 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.23 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.23 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.21 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.21 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.21 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.15 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.13 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.13 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 96.08 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.04 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 96.04 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.02 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.99 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.99 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.99 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.99 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.98 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.98 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.98 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.96 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.96 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.93 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.92 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.92 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.91 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.9 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.89 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.89 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.89 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.87 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.86 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.86 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.85 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.84 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.84 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.78 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.78 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.78 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.78 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.76 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.76 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.74 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.73 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.72 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.68 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.67 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.66 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.63 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.6 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.59 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.56 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.55 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.55 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.52 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.51 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.5 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.45 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.43 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.43 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.42 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.4 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.36 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.36 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.3 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.26 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.25 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.21 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.15 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.14 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.14 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.11 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 95.1 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.08 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.04 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.02 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.02 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.0 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.0 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 94.95 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.93 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.92 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.91 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.86 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.79 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.73 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.62 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 94.57 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.54 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.46 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.43 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.34 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.28 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.27 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 94.0 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.94 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 93.9 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.74 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.56 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.48 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.3 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 93.28 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.24 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 93.08 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.87 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 92.7 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 92.67 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 92.6 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.45 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 92.41 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 92.17 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.04 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.95 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 91.86 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.72 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 91.49 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 90.87 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.67 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 90.14 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.05 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 90.03 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 90.01 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 89.97 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 89.89 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 89.66 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 89.63 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 89.52 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.95 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 88.79 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 88.68 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.32 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 88.18 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 87.98 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.64 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 87.61 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 87.3 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 87.14 | |
| d1gg4a4 | 214 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 87.01 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 86.33 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 86.13 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.71 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 85.5 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 85.25 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 84.11 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 84.06 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 84.05 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-44 Score=308.71 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=137.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++|+++.|+...++ +++ +.+++||++||+||||||||||+++|+|+++ |++|+|.++|.+. ++
T Consensus 1 Iev~nv~k~yg~~~~l-----~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~~r 72 (232)
T d2awna2 1 VQLQNVTKAWGEVVVS-----KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAER 72 (232)
T ss_dssp EEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTTSCGGGT
T ss_pred CEEEEEEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEECCCCchhhc
Confidence 4688999999999888 999 9999999999999999999999999999999 9999999998753 24
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|+||++..++ .+|++||+.++....+.++++..+++.++++.++ ...++++.+||||||||++||+|++.+|+
T Consensus 73 ~ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~ 150 (232)
T d2awna2 73 GVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 150 (232)
T ss_dssp CEEEECSSCCC-----------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCS
T ss_pred eeeeecccccccc--chhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5999999975433 4999999999988888777777788999999887 56678899999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+|++|||+..||. ++++.+.++.+. .|++|||++++.. |++ |++++.|++++++.
T Consensus 151 illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 151 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 9999999999998 455666665432 4699999999988 665 99999999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.2e-44 Score=309.94 Aligned_cols=198 Identities=13% Similarity=0.114 Sum_probs=166.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
..++++++++.||+..++ +++ |.|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 5 ~~I~v~nlsk~yg~~~al-----~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~ 76 (239)
T d1v43a3 5 VEVKLENLTKRFGNFTAV-----NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 76 (239)
T ss_dssp CCEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CeEEEEEEEEEECCEEEE-----cceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEEcceecccCCcc
Confidence 347999999999999888 999 9999999999999999999999999999999 9999999998643
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.++|+||++..++ .+||++|+.+....++.++.+..+++.++++.++ ...++++.+||||||||++||+|++.+
T Consensus 77 ~r~ig~v~Q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~ 154 (239)
T d1v43a3 77 DRNISMVFQSYAVWP--HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 154 (239)
T ss_dssp GGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred cceEEEEeechhhcc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccC
Confidence 235999999965333 4899999998877777766666778889999888 567889999999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++|++|||+..||+ .+++.++++.+ ..+++|||++++.+ |++ |++++.|+++++..
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 56666666543 24699999999988 655 99999999999853
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3e-44 Score=310.57 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=171.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
..++++|+++.||+..++ +++ +.|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 2 ~~i~v~nl~k~yg~~~al-----~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i~~~~~~ 73 (240)
T d1g2912 2 AGVRLVDVWKVFGEVTAV-----REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (240)
T ss_dssp EEEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CcEEEEeEEEEECCEEEE-----cceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEEecccchh
Confidence 357899999999999888 999 9999999999999999999999999999999 9999999988532
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
++.++|++|++..++ .+||+||+.++...++.+..+..+++.++++.++ ...++++.+||||||||++||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~L~~--~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 74 IFVPPKDRDIAMVFQSYALYP--HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp EECCGGGSSEEEECSCCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred hhcccccccceecccchhhcc--hhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 245999999975333 5999999999998888776667778899999888 556788999999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+|++.+|++|++|||+..||+ .+++.+.++.+ ..|++|||++++.. |++ |++++.|+++|+..
T Consensus 152 raL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999 45555655543 24799999999988 655 89999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.2e-43 Score=306.69 Aligned_cols=197 Identities=14% Similarity=0.068 Sum_probs=168.3
Q ss_pred ccccCcccccc--cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQN--KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~--~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++|+++.| |...++ +++ +.|++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL-----~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i~~~~~ 74 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVAL-----DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGK 74 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEE-----EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEECCCCEEEE-----eceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC---CCCceEEECCEEeecCch
Confidence 47889999999 455667 888 9999999999999999999999999999999 9999999988542
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
++.++|+||++..++ .+|++||+.++...++.+..+..+++.++++.++ ...++++.+||||||||++||
T Consensus 75 ~~~~~~rr~ig~vfQ~~~L~p--~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA 152 (242)
T d1oxxk2 75 LIVPPEDRKIGMVFQTWALYP--NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (242)
T ss_dssp ESSCGGGSCEEEEETTSCCCT--TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred hhcchhhccceEEeccccccc--cccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHH
Confidence 245999999964333 4899999999888777776666778999999988 556889999999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+|++.+|++|++|||+..||+ .+++.++++.+ ..|++|||++++.+ |++ |++++.|+++++..
T Consensus 153 RaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999 45555555533 24699999999987 555 99999999999864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-43 Score=302.83 Aligned_cols=200 Identities=16% Similarity=0.109 Sum_probs=168.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++|+++.|+.....+.++ +++ +.|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 mi~v~nlsk~y~~~~~~~~al-~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~~~~~~~ 76 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQAL-NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESE 76 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEE-EEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEECTTCHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEe-eceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeEeeeCChhh
Confidence 478899999998753222222 777 9999999999999999999999999999999 99999999986531
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
+.++|+||++. +++ .+|++||+.++....+.++.+..+++.++|+.++ ...++++.+|||||+|||+||+|
T Consensus 77 ~~~~rr~ig~VfQ~~~-l~~-~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAra 154 (240)
T d3dhwc1 77 LTKARRQIGMIFQHFN-LLS-SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARA 154 (240)
T ss_dssp HHHHHHHEEECCSSCC-CCT-TSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHH
T ss_pred hhhhhccccccccccc-cCC-CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhh
Confidence 34999999964 333 4899999999988888887777888999999988 56678889999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++.+|++|++|||+..||+ .+++.+.++.++ .|++|||++++.. |++ |++++.|++++++
T Consensus 155 L~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred hccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999 455555555432 4699999999987 655 9999999999974
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.8e-42 Score=297.13 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=164.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
++++++++++|+. .++ +++ |.|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 mi~v~nlsk~y~~-~aL-----~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~ 71 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSL-----DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEK 71 (229)
T ss_dssp CEEEEEEEEECSS-CEE-----EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHH
T ss_pred CEEEEEEEEEeCC-EEE-----eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCCEEEEccEeccccchhH
Confidence 5788999999986 456 888 9999999999999999999999999999999 99999999986543
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|+||++..++ .+||+||+.++....+.. +.+++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 72 r~ig~v~Q~~~l~~--~~tV~enl~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 72 HDIAFVYQNYSLFP--HMNVKKNLEFGMRMKKIK---DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp HTCEEECTTCCCCT--TSCHHHHHHHHHHHHCCC---CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred hcceeeccccccCc--cccHHHHHHHHHhhcccc---HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccC
Confidence 24999999965433 499999999988877654 3567888888887 4567888899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++|||+..||+ ++++.++++.+ ..|++|||++++.+ |++ |++++.|++++++.
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred CceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999998 55566666533 24699999999988 555 99999999999854
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.8e-41 Score=296.94 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=166.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
.++++|+++.||+..++ +++ |+|++||++||+||||||||||+++|+|+++ |++|+|+++|.+..
T Consensus 2 ~Lev~nl~k~yg~~~al-----~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~ 73 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVL-----KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKD 73 (258)
T ss_dssp CEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTT
T ss_pred eEEEEEEEEEECCEEEE-----cceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc---CCCCCEEECCEEeccCCccc
Confidence 37899999999998888 999 9999999999999999999999999999999 99999999986532
Q ss_pred ---------------ceeEEEeCCCCCCCcccCCccccHHHHH-HhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCC
Q 023126 124 ---------------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFD 184 (287)
Q Consensus 124 ---------------~~i~~v~qd~~~~~~~~ltv~e~i~~~~-~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lS 184 (287)
+.++|+||++..++ .+|+.+|+.++. ...+.+..+..+++.++++.++. ..++++.+||
T Consensus 74 ~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~--~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LS 151 (258)
T d1b0ua_ 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS 151 (258)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred hhcccccHhHHHHHhcceEEEEechhhcc--chhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCccccc
Confidence 34899999964333 489999999864 44455555566778899998884 2466788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
|||+|||+||+|++.+|++|++|||+..||. ++++.++++.+. .++||||++++.. |++ |++++.|
T Consensus 152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g 231 (258)
T d1b0ua_ 152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231 (258)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999 455555555443 4699999999987 665 9999999
Q ss_pred ChHHHHH
Q 023126 251 KPPDVAK 257 (287)
Q Consensus 251 ~~~ev~~ 257 (287)
+++|+..
T Consensus 232 ~~~ev~~ 238 (258)
T d1b0ua_ 232 DPEQVFG 238 (258)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.2e-41 Score=292.73 Aligned_cols=201 Identities=16% Similarity=0.100 Sum_probs=164.6
Q ss_pred cCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc
Q 023126 46 ANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 124 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~ 124 (287)
|..+.+++++++++.||+..++ +++ |.|++||++||+||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 M~sd~~Lev~~l~k~yg~~~al-----~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~i~~ 72 (240)
T d1ji0a_ 1 MVSDIVLEVQSLHVYYGAIHAI-----KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITN 72 (240)
T ss_dssp CCCSEEEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTT
T ss_pred CCcceEEEEeeEEEEECCEEEE-----eeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEeccccccc
Confidence 4567899999999999999888 999 9999999999999999999999999999999 999999999865421
Q ss_pred ---------eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHH---hccCCCCCCCCCCcccCCchh
Q 023126 125 ---------VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---LRNQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 125 ---------~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~---l~~~~~~~~~~lSgG~~qrv~ 192 (287)
.++|+||+...++ .+|++||+.+....+. ......+.+.+.++. +....++++.+||||||||++
T Consensus 73 ~~~~~~~r~gi~~~~q~~~l~~--~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~ 149 (240)
T d1ji0a_ 73 KPAHVINRMGIALVPEGRRIFP--ELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp CCHHHHHHTTEEEECSSCCCCT--TSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHH
T ss_pred ccHHHHHHhcccccCcccccCC--cccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHH
Confidence 2889999865433 4899999876554332 222233334444443 446778899999999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
||+|++.+|++|++|||+..||+ ++++.++++.+. ++++|||++++.+ |++ |++++.|+++++..
T Consensus 150 iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999999 566666666543 4699999999987 555 89999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-40 Score=288.26 Aligned_cols=198 Identities=14% Similarity=0.074 Sum_probs=168.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++.++|++++||.+.++ +++ |.|++||++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 aI~v~nl~k~yg~~~vl-----~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~~i~~~~~~~ 73 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEIL-----KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPHEV 73 (238)
T ss_dssp CEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHHHH
T ss_pred CEEEEeEEEEECCEEEE-----ccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECcEecccChHHH
Confidence 46789999999999999 999 9999999999999999999999999999999 9999999988653
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
+..++|+||+...++ .+|+.||+.+....++.......+.+.+.++.++ ...+.++.+||||||||+++|+|++.+
T Consensus 74 ~~~i~~vpq~~~~~~--~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~ 151 (238)
T d1vpla_ 74 RKLISYLPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN 151 (238)
T ss_dssp HTTEEEECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred HhhEeEeeeccccCC--CccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965444 4899999999887777665555566777777766 456778999999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|++|++|||+..||+ .+++.++++.+. .+++|||++++.. |++ |++++.|+++++...
T Consensus 152 p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 152 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999998 555666555443 3689999999987 665 899999999998764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.2e-40 Score=283.65 Aligned_cols=196 Identities=15% Similarity=0.127 Sum_probs=154.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++++++.|+.....+.++ +++ |.|++||++||+||||||||||+++|+|+++ |++|+|+++|.+..
T Consensus 1 mI~i~nlsk~y~~~~~~~~al-~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~i~~~~~~~ 76 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYAL-KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDE 76 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEE-EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEE-eceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC---CCcceeEECCEEcCcCChhh
Confidence 468899999997643211112 777 9999999999999999999999999999999 99999999986532
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC---CchHHHHHHHHHHhcc---CCCCCCCCCCcccCCch
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~---~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv 191 (287)
+.++|++|++..++ .+|++||+.++........ .+..+++.+.|+.++. ..+.++.+|||||||||
T Consensus 77 ~~~~r~~~ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 77 LTKIRRDKIGFVFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHHHHHHEEEECTTCCCCT--TSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred cchhhcceEEEEecchhhCc--CccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHH
Confidence 24999999965433 4899999999876554332 2334566777777773 35678889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
+||+|++.+|++|++|||+..||+ .+++.+.++.++ .|++|||++++.. |++ |+++++|.+
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999 566666666432 4799999997732 444 777777653
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.7e-40 Score=288.49 Aligned_cols=200 Identities=14% Similarity=0.086 Sum_probs=164.3
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
.+++++|+++.||+..++ +++ +++++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 3 ~iL~v~nlsk~yg~~~aL-----~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~~~~~ 74 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFKAL-----DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 74 (254)
T ss_dssp EEEEEEEEEEEETTEEEE-----EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred ceEEEEEEEEEECCeEEE-----cceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECCEeccchhHH
Confidence 478999999999999888 999 9999999999999999999999999999999 99999999987542
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHh------------cCCCC-CchHHHHHHHHHHhc--cCCCCCCCCCC
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR------------RGAPW-TFNPLLLLNCLKNLR--NQGSVYAPSFD 184 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~------------~~~~~-~~~~~~~~~~l~~l~--~~~~~~~~~lS 184 (287)
..++|+||++..++ .+|+.||+.++... ..... ....+++.++++.++ ...++++.+||
T Consensus 75 ~~~~~gi~~v~Q~~~~~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 75 ELYHYGIVRTFQTPQPLK--EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 152 (254)
T ss_dssp HHHHHTEEECCCCCGGGG--GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHHHhcCCccCCccccCC--CCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCC
Confidence 12899999976443 48999999764211 11122 223456777888776 45677899999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||||||++||+|++.+|++|++|||+..+|. ++++.++++.+. ++++|||++++.+ |++ |+++++|
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred cHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEe
Confidence 9999999999999999999999999999999 566666665443 3699999999987 665 9999999
Q ss_pred ChHHHHHHH
Q 023126 251 KPPDVAKWR 259 (287)
Q Consensus 251 ~~~ev~~~~ 259 (287)
+++|+.+.-
T Consensus 233 ~~~e~~~~~ 241 (254)
T d1g6ha_ 233 RGEEEIKNV 241 (254)
T ss_dssp ESHHHHHHH
T ss_pred cHHHHhhcc
Confidence 999977654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.7e-38 Score=272.37 Aligned_cols=188 Identities=14% Similarity=0.082 Sum_probs=150.6
Q ss_pred cccccccccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------CceeEEE
Q 023126 56 RSLVQNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVL 129 (287)
Q Consensus 56 ~~~~~~~~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~~i~~v 129 (287)
++.++||+.. + +-.+.+. +|+++|+||||||||||+++|+|+++ |++|+|.++|.+. ++.++|+
T Consensus 6 ~~~k~~g~~~-~-----~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 6 RAEKRLGNFR-L-----NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp EEEEEETTEE-E-----EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEECCEE-E-----EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHcCceee
Confidence 3456666532 2 3227775 68999999999999999999999999 9999999998542 3569999
Q ss_pred eCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEc
Q 023126 130 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (287)
Q Consensus 130 ~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d 207 (287)
||++..++ .+||+||+.+++. ...+.+..+++.++++.++ ...++++.+|||||||||+||+|++.+|++|++|
T Consensus 76 ~Q~~~l~~--~ltV~enl~~~l~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlD 151 (240)
T d2onka1 76 PQDYALFP--HLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151 (240)
T ss_dssp CSSCCCCT--TSCHHHHHHTTCT--TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred ccchhhcc--cchhhHhhhhhhc--ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEec
Confidence 99965433 4999999988643 2333344567889999888 5667889999999999999999999999999999
Q ss_pred CcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 208 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 ~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
||+..||. .+++.++++.. .+|++|||++++.+ |++ |++++.|++++++.
T Consensus 152 EPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 99999998 55566655543 34699999999988 555 99999999999864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.2e-36 Score=264.05 Aligned_cols=192 Identities=16% Similarity=0.125 Sum_probs=150.9
Q ss_pred ccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++|++++|++ ..++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 mle~knvsf~Y~~~~~vL-----~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~ 72 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQIL-----RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLE 72 (242)
T ss_dssp CEEEEEEEECSSSSSCSE-----EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCS
T ss_pred CEEEEEEEEECCCCCcee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC---CCCCEEEECCEEeccccHH
Confidence 5789999999965 4566 888 9999999999999999999999999999999 9999999988542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---------CC----CCCCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~lSgG~ 187 (287)
++.++|++|+++.+. .|+++|+.+.. ......+.+.+.++.... .. ......|||||
T Consensus 73 ~~r~~i~~v~Q~~~lf~---~ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGq 144 (242)
T d1mv5a_ 73 NWRSQIGFVSQDSAIMA---GTIRENLTYGL-----EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (242)
T ss_dssp CCTTTCCEECCSSCCCC---EEHHHHTTSCT-----TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred HHHhheEEEccccccCC---cchhhheeccc-----ccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHH
Confidence 345999999976443 48999876431 122233333344433321 11 12344799999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||++||+|++.+|++|++||++..||+ .+++.++++.. .+|+|||+++.+.. |++ |++++.|+++|+
T Consensus 145 kQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eL 224 (242)
T d1mv5a_ 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNEL 224 (242)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999998 57777777654 34799999998876 655 999999999998
Q ss_pred HHH
Q 023126 256 AKW 258 (287)
Q Consensus 256 ~~~ 258 (287)
+..
T Consensus 225 l~~ 227 (242)
T d1mv5a_ 225 VAT 227 (242)
T ss_dssp HHH
T ss_pred HhC
Confidence 764
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-36 Score=263.66 Aligned_cols=196 Identities=15% Similarity=0.092 Sum_probs=150.6
Q ss_pred CccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
..+++++++++|+++ .++ +++ +.|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 10 g~I~~~nvsf~Y~~~~~~~vL-----~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~---p~~G~I~i~g~~i~~~ 81 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNRPDVLVL-----QGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLPQY 81 (251)
T ss_dssp CCEEEEEEEECCTTSTTCCSE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGB
T ss_pred ceEEEEEEEEECCCCCCCEeE-----eceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCcCEEEECCEecchh
Confidence 458999999999754 366 888 9999999999999999999999999999999 99999999997532
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHH------HHHHHHHhc----cCCCCCCCCCCccc
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL------LLNCLKNLR----NQGSVYAPSFDHGV 187 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~------~~~~l~~l~----~~~~~~~~~lSgG~ 187 (287)
+.++|++|+++.+ + .|+++|+.++.... ........ +.+.++.+. ...+.....|||||
T Consensus 82 ~~~~~r~~i~~v~Q~~~lf-~--~tv~eni~~g~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGq 156 (251)
T d1jj7a_ 82 EHRYLHRQVAAVGQEPQVF-G--RSLQENIAYGLTQK--PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQ 156 (251)
T ss_dssp CHHHHHHHEEEECSSCCCC-S--SBHHHHHHCSCSSC--CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHH
T ss_pred hhHHHHHHhhhcccccccc-C--cchhhhhhhhhccc--chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhH
Confidence 3599999998643 3 59999987642111 11011111 122333332 22345667899999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||++||+|++.+|+++++||++..||. .+++.+.++.+ .+|+||||++.+.. |++ |+++++|+++
T Consensus 157 kQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~ 236 (251)
T d1jj7a_ 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQ 236 (251)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHH
T ss_pred ceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999998 44555555443 24799999998765 655 9999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
|+++.
T Consensus 237 eLl~~ 241 (251)
T d1jj7a_ 237 QLMEK 241 (251)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-37 Score=268.29 Aligned_cols=190 Identities=15% Similarity=0.173 Sum_probs=148.5
Q ss_pred cccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 52 FGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 52 ~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
+++++++++|. ...++ +++ +.|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 2 I~~~nvsf~Y~~~~~~vL-----~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~ 73 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVIL-----DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 73 (241)
T ss_dssp EEEEEEEEESSTTSCEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred eEEEEEEEEeCCCCcceE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC---CCCCEEEECCEEecccchh
Confidence 46789999994 34567 888 9999999999999999999999999999999 99999999997643
Q ss_pred ---ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHH------hc---c----CCCCCCCCCCccc
Q 023126 124 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LR---N----QGSVYAPSFDHGV 187 (287)
Q Consensus 124 ---~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~------l~---~----~~~~~~~~lSgG~ 187 (287)
+.++|++|++.. ++ .|+++|+.+.. +. ...+++.+.++. +. . ........|||||
T Consensus 74 ~lr~~i~~v~Q~~~l-f~--~Ti~eNi~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq 144 (241)
T d2pmka1 74 WLRRQVGVVLQDNVL-LN--RSIIDNISLAN-----PG-MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 144 (241)
T ss_dssp HHHHHEEEECSSCCC-TT--SBHHHHHCTTS-----TT-CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHH
T ss_pred hhhceEEEEeccccc-CC--ccccccccccC-----cc-ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHH
Confidence 359999999764 33 69999987632 11 122222222222 11 1 1234556999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
+||++||+|++.+|++|++||++..||. .+++.+.++.+ +.|+|||+++.+.. |++ |++++.|+++++
T Consensus 145 ~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~el 224 (241)
T d2pmka1 145 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 224 (241)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999 45566666554 35799999998755 655 999999999998
Q ss_pred HHH
Q 023126 256 AKW 258 (287)
Q Consensus 256 ~~~ 258 (287)
+.+
T Consensus 225 l~~ 227 (241)
T d2pmka1 225 LSE 227 (241)
T ss_dssp HHS
T ss_pred HhC
Confidence 753
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-35 Score=259.50 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=150.3
Q ss_pred ccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
-+++++++++|+.+ .++ +++ +.|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L-----~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~ 84 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPAL-----RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTL 84 (253)
T ss_dssp CEEEEEEEECSSSSSCCSE-----EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCH
T ss_pred EEEEEEEEEEeCCCCCcee-----eceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC---CCccEEEECCcccchhhh
Confidence 48899999999754 456 888 9999999999999999999999999999999 99999999997643
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------Hhcc----CCCCCCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRN----QGSVYAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~----~~~~~~~~lSgG 186 (287)
..++|++|++..+. .|+.+|+.++ .+.....+++.++++ .+.. ........||||
T Consensus 85 ~~~r~~i~~v~Q~~~l~~---~ti~~n~~~~-----~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGG 156 (253)
T d3b60a1 85 ASLRNQVALVSQNVHLFN---DTVANNIAYA-----RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 156 (253)
T ss_dssp HHHHHTEEEECSSCCCCS---SBHHHHHHTT-----TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred hhhhheEEEEeeccccCC---cchhhhhhhc-----CcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHH
Confidence 24999999976543 4788887643 222223333333332 2221 223456689999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||++||+|++.+|++|++||++..||+ .+++.+.++.. ++|+||||++.+.. |++ |++++.|+++|
T Consensus 157 qkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~e 236 (253)
T d3b60a1 157 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSE 236 (253)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999 45555665543 34799999998755 555 99999999999
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
++..
T Consensus 237 Ll~~ 240 (253)
T d3b60a1 237 LLAQ 240 (253)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.6e-35 Score=256.19 Aligned_cols=191 Identities=13% Similarity=0.100 Sum_probs=150.1
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
-+++++++++|++ ..++ +++ +.|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL-----~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~ 87 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPIL-----KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLT 87 (255)
T ss_dssp CEEEEEEEECSCSSSCCSE-----EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCH
T ss_pred EEEEEEEEEEeCCCCCcce-----eceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC---ccccccccCCEEcccCCH
Confidence 3889999999975 3467 888 9999999999999999999999999999999 99999999986532
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCC----CCCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lSgG 186 (287)
+.++|++|+++.+ + .|+++|+.++. +.. ..+.+.++++..+ .+.+ .....||||
T Consensus 88 ~~lr~~i~~v~Q~~~lf-~--~Ti~eNi~~g~-----~~~-~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 158 (255)
T d2hyda1 88 GSLRNQIGLVQQDNILF-S--DTVKENILLGR-----PTA-TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGG 158 (255)
T ss_dssp HHHHHTEEEECSSCCCC-S--SBHHHHHGGGC-----SSC-CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHH
T ss_pred HHhhheeeeeeccccCC-C--CCHHHHHhccC-----cCC-CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHH
Confidence 4599999997644 3 69999997642 221 2233444443332 1222 234579999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||++||+|++.+|+++++||++..||. .+++.+.++.. ++|+|||+++.+.. |++ |++++.|+++|
T Consensus 159 q~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~e 238 (255)
T d2hyda1 159 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRE 238 (255)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999 44555555543 34799999998765 655 89999999999
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
++..
T Consensus 239 Ll~~ 242 (255)
T d2hyda1 239 LIAK 242 (255)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5.2e-33 Score=239.66 Aligned_cols=188 Identities=18% Similarity=0.125 Sum_probs=143.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
.+++++++++.+ .+ +++ +.|++||++||+||||||||||+++|+|+ . |++|+|.++|.+..
T Consensus 2 ~il~~~dv~~~~----~l-----~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-~---~~~G~I~~~g~~i~~~~~~ 68 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RL-----GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-T---SGKGSIQFAGQPLEAWSAT 68 (231)
T ss_dssp EEEEEEEECCTT----TS-----CSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS-C---CCSSEEEESSSBGGGSCHH
T ss_pred eEEEEECcccCc----ee-----cCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-C---CCceEEEECCEECCcCCHH
Confidence 356777776553 45 778 99999999999999999999999999995 4 88999999887532
Q ss_pred ---ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhc
Q 023126 124 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 124 ---~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...+|++|+....+. .++++++.+. .......+.+.++++.++ ...++++.+||||||||+++|++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~ 141 (231)
T d1l7vc_ 69 KLALHRAYLSQQQTPPFA--TPVWHYLTLH-----QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 141 (231)
T ss_dssp HHHHHEEEECSCCCCCSS--CBHHHHHHHH-----CSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHhhceeeeccccCCcc--ccHHHHhhhc-----cchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHH
Confidence 137888888553332 4566555432 222334566777777776 4567788899999999999999987
Q ss_pred c-------CccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 199 L-------QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 199 ~-------~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
. .|++|++|||+..||. .+++.++++.+. ++++|||++++.. |++ |++++.|+++|++.
T Consensus 142 ~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~ 221 (231)
T d1l7vc_ 142 QITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221 (231)
T ss_dssp HHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSC
T ss_pred hhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhC
Confidence 4 6699999999999998 444555554433 4689999999888 555 99999999999853
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=9.5e-33 Score=233.10 Aligned_cols=163 Identities=16% Similarity=0.187 Sum_probs=134.3
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---Ccee
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 126 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~~~i 126 (287)
.++++++++.|+. .++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. +..+
T Consensus 2 ~lev~~ls~~y~~-~vl-----~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK-PVL-----ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI 72 (200)
T ss_dssp EEEEEEEEEESSS-EEE-----EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred eEEEEEEEEEeCC-eEE-----eceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc---cCCCEEEECCEehhHhcCcE
Confidence 3688999999964 567 898 9999999999999999999999999999999 9999999998653 3458
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-CCCCCCCCCCcccCCchhhhhhhccCccEEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~lSgG~~qrv~ia~al~~~a~~li 205 (287)
+|++|+..... .+++.+++.+....++.. ...+.+.+.++.++. ..+.++.+||||||||+++|++++.+|++++
T Consensus 73 ~~~~~~~~~~~--~~t~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~lll 148 (200)
T d1sgwa_ 73 FFLPEEIIVPR--KISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV 148 (200)
T ss_dssp EEECSSCCCCT--TSBHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEeecccCCC--CcCHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEE
Confidence 99999865333 489999998877776543 234556677777763 3456788999999999999999999999999
Q ss_pred EcCcccCCCh----hhHHHHHHhhc
Q 023126 206 VDGNYLFLDG----GVWKDVSSMFD 226 (287)
Q Consensus 206 ~d~~~lllDe----~~~~~l~~~~~ 226 (287)
+|||+..||+ .+++.+.++.+
T Consensus 149 lDEPt~gLD~~~~~~i~~~l~~~~~ 173 (200)
T d1sgwa_ 149 LDDPVVAIDEDSKHKVLKSILEILK 173 (200)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHH
T ss_pred EcCcccccCHHHHHHHHHHHHHHHh
Confidence 9999999999 45566666543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1e-31 Score=237.61 Aligned_cols=173 Identities=11% Similarity=0.109 Sum_probs=132.5
Q ss_pred cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCccc
Q 023126 62 KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 140 (287)
Q Consensus 62 ~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ 140 (287)
.++.++ +++ +.|++||++||+||||||||||+++|+|+++ |++|+|.++|. ++|++|++..++
T Consensus 47 ~g~pvL-----~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~-----i~~v~Q~~~l~~--- 110 (281)
T d1r0wa_ 47 VGNPVL-----KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSGR-----VSFCSQFSWIMP--- 110 (281)
T ss_dssp TTCEEE-----EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEECCSC-----EEEECSSCCCCS---
T ss_pred CCCeEE-----eCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc---CCCcEEEECCE-----EEEEeccccccC---
Confidence 345666 888 9999999999999999999999999999999 99999999873 899999976543
Q ss_pred CCccccHHHHHHhcCCCCCchHHHHHHHHHHh---------ccC----CCCCCCCCCcccCCchhhhhhhccCccEEEEc
Q 023126 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---------RNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (287)
Q Consensus 141 ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l---------~~~----~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d 207 (287)
.|+++|+.++. . .+.....+.++.. ... .......||||||||++||+|++.+|++|++|
T Consensus 111 ~tv~eni~~~~-----~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLD 183 (281)
T d1r0wa_ 111 GTIKENIIFGV-----S--YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD 183 (281)
T ss_dssp EEHHHHHTTTS-----C--CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred ceeeccccccc-----c--ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhc
Confidence 48999986532 1 1122222222221 111 12345579999999999999999999999999
Q ss_pred CcccCCChhhHHHHHHh-hc------CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 208 GNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 208 ~~~lllDe~~~~~l~~~-~~------~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+++..||....+.+.+. .. .+|++||+++.+.. |++ |++++.|+++|+..
T Consensus 184 EPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 184 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999998544444332 21 24799999988755 655 89999999999865
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=6e-19 Score=156.59 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=136.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 160 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~ 160 (287)
.-++||.|++|||||||++.|..++. -.. ....+..+++|+|+.++..+.... ....+|.|.+.
T Consensus 80 P~iIGIaG~sgSGKSTla~~L~~lL~---~~~---------~~~~v~~Is~D~F~~~~~~l~~~~----~~~~~g~Pes~ 143 (308)
T d1sq5a_ 80 PYIISIAGSVAVGKSTTARVLQALLS---RWP---------EHRRVELITTDGFLHPNQVLKERG----LMKKKGFPESY 143 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT---TST---------TCCCEEEEEGGGGBCCHHHHHHHT----CTTCTTSGGGB
T ss_pred CEEEEEeCCCCCCCcHHHHHHHHHHh---hhc---------CCCceEEEeeeeeECCchHHHHhc----CCccCCchHhh
Confidence 35999999999999999999999986 111 113378899999977653221100 12356778889
Q ss_pred hHHHHHHHHHHhccC-CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhH------HHHHHhhcCceEEEe
Q 023126 161 NPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW------KDVSSMFDEKWFIEV 233 (287)
Q Consensus 161 ~~~~~~~~l~~l~~~-~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~------~~l~~~~~~~i~vtH 233 (287)
|.+.+.+.|..+..+ .....|.||.-...++.-.......++++|+||.+++.|+..+ ..+.++++..||+..
T Consensus 144 D~~~L~~~L~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~~Ifvda 223 (308)
T d1sq5a_ 144 DMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDA 223 (308)
T ss_dssp CHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEEC
T ss_pred hHHHHHHHHHHHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhhhhheeeeecC
Confidence 999999999888754 4567788887766666555555667899999999999997533 337889999999999
Q ss_pred CHHHHHHHHhhcccc-C----------------CChHH---HHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 234 DLDTAMQRVLKRHIS-T----------------GKPPD---VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 234 d~~~~~~rv~gr~v~-~----------------G~~~e---v~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
+.+.+..|.+.|.+. + .+.++ .+...|.....|+.+ ||+|++++||+|+++-
T Consensus 224 ~~~~~~~r~i~R~~~~r~~a~~d~~~~~~~y~~~~~~ea~~~a~~~w~~i~~~nl~~~I~Ptk~rADlIi~~~ 296 (308)
T d1sq5a_ 224 PEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKS 296 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred CHHHHHHHHHHHHHHHhcccccChHHHHHHHhccCHHHHHHHHHHHHHHcchhhHHHhCccchhcceEEEEcC
Confidence 999998866643321 1 11222 234557777788876 9999999999999753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=9.2e-17 Score=134.86 Aligned_cols=187 Identities=23% Similarity=0.351 Sum_probs=122.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH--HhcCCCCC
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH--ARRGAPWT 159 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~--~~~~~~~~ 159 (287)
-++||.|++|||||||.+.|+..+.....+.+ ...+.++++|+|+... ...+...... ..+..+..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~---------~~~~~vi~~D~yy~~~---~~~~~~~~~~~~~~~~~~~~ 70 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYR---------QKQVVILSQDSFYRVL---TSEQKAKALKGQFNFDHPDA 70 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGG---------GCSEEEEEGGGGBCCC---CHHHHHHHHTTCSCTTSGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchhccccC---------CCceEEEecccccccc---chhhhhhhhhcccccCCcHH
Confidence 48999999999999999999988752110100 1226789999885432 1111111110 11223445
Q ss_pred chHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHH
Q 023126 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 239 (287)
Q Consensus 160 ~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~ 239 (287)
.+.+.+.+.+..+........+.|..-...+.... ....+..+++.++.+++.+ ..+.++++..||++.+.++..
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiveg~~~l~~----~~l~~~~D~~i~v~~~~~~~~ 145 (213)
T d1uj2a_ 71 FDNELILKTLKEITEGKTVQIPVYDFVSHSRKEET-VTVYPADVVLFEGILAFYS----QEVRDLFQMKLFVDTDADTRL 145 (213)
T ss_dssp BCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEE-EEECCCSEEEEECTTTTSS----HHHHHHCSEEEEEECCHHHHH
T ss_pred HHHHHHHhhhhhhhcCCcccccccccccccccCce-EEecccceEEecchhhhcc----HHHHhhhheeeeecCCHHHHH
Confidence 56677777776666554444444433333332221 1234578999999999988 567888999999999999999
Q ss_pred HHHhhcc-ccCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 240 QRVLKRH-ISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 240 ~rv~gr~-v~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
.|.+.|. ..+|...+.+.+.|.....++++ |++|++++||+|+++.
T Consensus 146 ~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~p~k~~ADlIi~~~ 193 (213)
T d1uj2a_ 146 SRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRG 193 (213)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHhhhhHhcCCEEEeCC
Confidence 9888664 46777666555555556677776 9999999999999764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.61 E-value=1.5e-16 Score=139.20 Aligned_cols=185 Identities=14% Similarity=0.122 Sum_probs=122.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcc-cCCcc-ccHHHH-HH--hcCCC
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLS-QLDAM-EDPKEA-HA--RRGAP 157 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~-~ltv~-e~i~~~-~~--~~~~~ 157 (287)
++||.|++||||||+.+.|..+++ .. | -.+.++.+|+|+.++. ++... +..... .. .+..|
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~---~~-~----------v~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P 71 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR---RE-G----------VKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSY 71 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH---HH-T----------CCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh---hc-C----------CCeEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCc
Confidence 899999999999999999999886 11 1 1257899999875431 11100 000000 01 12236
Q ss_pred CCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhh---------hhccCccEEEEcCcccCCChhhHHHHHHhhcCc
Q 023126 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDI---------LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 228 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~---------al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~ 228 (287)
.+.+.+.+.+.|..++.+.....+.|+.-...+..... .+..++++|+.||.+.++..+- ..++++++..
T Consensus 72 ~A~d~dlL~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~-~~ir~~~Dlk 150 (288)
T d1a7ja_ 72 EANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLADLK 150 (288)
T ss_dssp GGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSS-CBCGGGCSEE
T ss_pred ccccHHHHHHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccch-hhhHhhcCeE
Confidence 67788999999999987777777777765544432111 1245578999999988873211 2477888999
Q ss_pred eEEEeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEec
Q 023126 229 WFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 229 i~vtHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~ 283 (287)
|||..|.+....|.+.|++ ++|...|.+.+.+.. +.|++. ||.|++++||++++
T Consensus 151 IfVd~d~dlrliRRI~RD~~eRG~s~E~V~~~i~r-rmpdy~~yI~Pq~~~aDI~~~ 206 (288)
T d1a7ja_ 151 IGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILR-RMHAYVHCIVPQFSQTDINFQ 206 (288)
T ss_dssp EEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHH-HHHHHHHHTGGGGGTCSEEEE
T ss_pred EEEECCCCeEEEeeehhhhhhcCCCHHHHHHHHHh-cchHHHHHHHHhhhceeEEEE
Confidence 9999999999998887776 678877655555554 488887 99999999999975
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.18 E-value=3.6e-13 Score=108.63 Aligned_cols=129 Identities=16% Similarity=0.066 Sum_probs=73.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---CceeEEEe--CCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVLP--MDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~~~i~~v~--qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
.++|+||||||||||+++|+|.++ |+.|.+...+... ....++.. ..+............... .+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG---KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKL-----VGS- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG---GGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSE-----ETT-
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC---CCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhh-----hhh-
Confidence 479999999999999999999999 9888876543221 11112111 110000000000000000 000
Q ss_pred CCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcc--cCCChhhHHHHHHhhcC----ceEE
Q 023126 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY--LFLDGGVWKDVSSMFDE----KWFI 231 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~--lllDe~~~~~l~~~~~~----~i~v 231 (287)
...+.+. ..+|+|++++.+++.+....++++++|+.- ...++..+..+.+.... .+++
T Consensus 73 ~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~ 136 (178)
T d1ye8a1 73 YGVNVQY----------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVAT 136 (178)
T ss_dssp EEECHHH----------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEE
T ss_pred hhcCcch----------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 0001111 135688899999999999999999999953 33344666667666542 2467
Q ss_pred EeCHH
Q 023126 232 EVDLD 236 (287)
Q Consensus 232 tHd~~ 236 (287)
+|+..
T Consensus 137 ~h~~~ 141 (178)
T d1ye8a1 137 IPIRD 141 (178)
T ss_dssp CCSSC
T ss_pred EccHH
Confidence 77764
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.11 E-value=1.4e-11 Score=100.29 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=81.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 161 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~ 161 (287)
-+|||.|++|||||||++.|...+. . .| ..+..++++.++............... .+.......
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~---~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 86 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLR---E-QG----------ISVCVFHMDDHIVERAKRYHTGNEEWF--EYYYLQWDV 86 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH---H-TT----------CCEEEEEGGGGCCCHHHHSSSSSCHHH--HHHHTSSCH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc---c-cc----------ccceeccccccccCHHHHHHhhccccc--ccCcchHHH
Confidence 4899999999999999999998876 1 11 114455666554332211111111100 000111122
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHH
Q 023126 162 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 241 (287)
Q Consensus 162 ~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~r 241 (287)
.......+..+........+.+......+..- ........+++.++.+++.. .+.+..+..||++-+.+...+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivi~e~~~~~~~-----~~~~~~d~~i~l~~~~e~~~~R 160 (198)
T d1rz3a_ 87 EWLTHQLFRQLKASHQLTLPFYDHETDTHSKR-TVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDCPREIRFAR 160 (198)
T ss_dssp HHHHHHTGGGTTTCSEEEEEEEETTTTEEEEE-EEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECCC-------
T ss_pred HHHHHHHHHHhhccCccccccchhhhcccccc-ccccccccccccccchhccc-----cccccceeeeeccCcHHHHHHH
Confidence 22222222222222222222111111111111 11233466778887766544 4566677788999999988877
Q ss_pred HhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEEec
Q 023126 242 VLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIK 283 (287)
Q Consensus 242 v~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~ 283 (287)
.+.| +|...+.+.++|........+++.| +++||+|++
T Consensus 161 ~~~r---~~~~~~~~~~~~~~~~~~y~~~~~p-~~~ADiIid 198 (198)
T d1rz3a_ 161 ENDQ---VKQNIQKFINRYWKAEDYYLETEEP-IKRADVVFD 198 (198)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCH-HHHCSEEEC
T ss_pred HHHH---cCCCHHHHHHHHHHHHHHHHHhcCh-HHhCCEEeC
Confidence 6644 4555554555544433333347776 568999986
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=2.2e-10 Score=99.71 Aligned_cols=188 Identities=18% Similarity=0.240 Sum_probs=113.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHH------HHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE------AHARR 154 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~------~~~~~ 154 (287)
.-++||.|+.|||||||.+.|.-.+... .| ....+.++++|+|++...+ ++.+.. ....+
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~---~~--------~~~~v~~iS~DdfY~t~~~---r~~L~~~~~~~pl~~~R 92 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNHLMEK---YG--------GEKSIGYASIDDFYLTHED---QLKLNEQFKNNKLLQGR 92 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH---HG--------GGSCEEEEEGGGGBCCHHH---HHHHHHHTTTCGGGSSS
T ss_pred CEEEEeECCCCCCHHHHHHHHHHHHHHH---hC--------CCcceEeeccCCCCCCHHH---HHHHhhhccccccceec
Confidence 3589999999999999999887665310 00 0122778899998765321 111211 11235
Q ss_pred CCCCCchHHHHHHHHHHhccCC------CCCCCCCC----cccCCchhhhhhhccCccEEEEcCcccCCCh---------
Q 023126 155 GAPWTFNPLLLLNCLKNLRNQG------SVYAPSFD----HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--------- 215 (287)
Q Consensus 155 ~~~~~~~~~~~~~~l~~l~~~~------~~~~~~lS----gG~~qrv~ia~al~~~a~~li~d~~~lllDe--------- 215 (287)
|.|.++|.+.+.+.|..+.... ...+|.|+ .|...|+.-...+..+++++|+||++++..+
T Consensus 93 G~PgThD~~ll~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p~~~~~~~~~ 172 (286)
T d1odfa_ 93 GLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIENND 172 (286)
T ss_dssp CSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCCSCTTTCS
T ss_pred CCCcchhHHHHHHHHHHHHhhccccccccccCCchHHHhhccccccCcccceecCCCCEEEEechhhcccchhhhhhccc
Confidence 7899999999999999886432 24566666 4566676654455667899999999999865
Q ss_pred -------h---hHHHHHHhh-------cCceEE-EeCHHHHHHHHh---hc---cccCCChHHHHHHHHHhcCcchHH-H
Q 023126 216 -------G---VWKDVSSMF-------DEKWFI-EVDLDTAMQRVL---KR---HISTGKPPDVAKWRIEYNDRPNAE-L 270 (287)
Q Consensus 216 -------~---~~~~l~~~~-------~~~i~v-tHd~~~~~~rv~---gr---~v~~G~~~ev~~~~~~~~~~~~~~-~ 270 (287)
. .+..-.++. +..|++ .-|.+.+..+.. .+ -...|..++.+.++.... .+..+ +
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~Lka~~f~~V~~WR~~QE~~L~~~~g~gMs~eqv~~FV~~y-~~~~~~~ 251 (286)
T d1odfa_ 173 LLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRY-MPSYKLY 251 (286)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTT-HHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhccccccccCCchhHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHHHHHH
Confidence 0 111111211 111333 457777777333 11 123466777666666543 33333 3
Q ss_pred Hh------hcCCCccEEec
Q 023126 271 IM------KSKKNADLVIK 283 (287)
Q Consensus 271 i~------~~~~~aD~i~~ 283 (287)
+. +....||+++.
T Consensus 252 l~~~~~~~~lp~~adlvl~ 270 (286)
T d1odfa_ 252 LNDFVRSESLGSIATLTLG 270 (286)
T ss_dssp HHHHHHHTCSSSSEEEEEE
T ss_pred HHhhhhccCCCCcceEEEE
Confidence 31 23678999874
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=98.01 E-value=1.1e-05 Score=63.53 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+|++||||||+.+.|+-.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999886
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=3.4e-06 Score=65.70 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999998875
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=97.85 E-value=4.1e-05 Score=62.21 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=44.7
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccE
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~ 280 (287)
.+.++.|.++++=- .+...++.+|+|..+.+....|+..| +|...+.+...+..- .+..+. ...||+
T Consensus 105 ~~~vv~e~~ll~e~-----~~~~~~d~ii~v~~~~~~r~~R~~~R---~~~s~e~~~~~~~~Q-~~~~~k----~~~aD~ 171 (205)
T d1jjva_ 105 APYTLFVVPLLIEN-----KLTALCDRILVVDVSPQTQLARSAQR---DNNNFEQIQRIMNSQ-VSQQER----LKWADD 171 (205)
T ss_dssp SSEEEEECTTTTTT-----TCGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHHS-CCHHHH----HHHCSE
T ss_pred CCeEEEEecccccc-----chhhhhhheeeecchHHHHHHHHHhc---CCchHHHHHHHHHhC-CCHHHH----HHhCCE
Confidence 56777887766522 34456677889999999988887654 366666666655432 333322 457999
Q ss_pred EeccC
Q 023126 281 VIKSI 285 (287)
Q Consensus 281 i~~~~ 285 (287)
||++.
T Consensus 172 vI~N~ 176 (205)
T d1jjva_ 172 VINND 176 (205)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99875
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=5.6e-06 Score=66.06 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=23.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|.++.|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.78 E-value=7.8e-06 Score=63.89 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=26.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|.+|.|+|++||||||+.+.|+-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999998885
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=9e-06 Score=63.41 Aligned_cols=28 Identities=39% Similarity=0.639 Sum_probs=25.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.++.|.|++||||||+++.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678999999999999999999999886
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.74 E-value=5.9e-06 Score=64.65 Aligned_cols=27 Identities=37% Similarity=0.562 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.|+++.|.|++||||||+++.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999987654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.69 E-value=1e-05 Score=63.30 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+|.+|||||||++.|...+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998886
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=9e-06 Score=63.66 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
.+.|.||+|+|||||++.++..+. ...+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~---~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK---SSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH---HTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH---HCCCEE
Confidence 578999999999999999999997 554443
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.63 E-value=1.6e-05 Score=61.83 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+|.|.|++||||||+++.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999999885
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.62 E-value=1.3e-05 Score=62.69 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..++|.|+.|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999875
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.54 E-value=3e-05 Score=60.78 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=23.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|.|++||||||+++.|+..+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999886
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.53 E-value=2.8e-05 Score=60.57 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=24.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|-.+.|.|++||||||+++.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3566889999999999999999998774
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=2.5e-05 Score=59.69 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+||+||||||+.+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999999886
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.50 E-value=2.9e-05 Score=60.00 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.|.||+||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4788999999999999999998875
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.50 E-value=2.8e-05 Score=59.39 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=19.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+++.|.|++|||||||++.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999987653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.47 E-value=9.7e-05 Score=60.30 Aligned_cols=58 Identities=21% Similarity=0.168 Sum_probs=40.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~ 156 (287)
++.+++++||+|+||||++-.|+-.+. ..| ..++++.-|.|- .-..|.+.......+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~----~~g----------~kV~lit~Dt~R-----~gA~eQL~~~a~~l~i 62 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ----NLG----------KKVMFCAGDTFR-----AAGGTQLSEWGKRLSI 62 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH----TTT----------CCEEEECCCCSS-----TTHHHHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----HCC----------CcEEEEEecccc-----ccchhhHhhcccccCc
Confidence 467999999999999999988887765 112 348888888651 2344666555554443
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=2e-05 Score=62.66 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.++.|+|++||||||+++.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999998875
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.45 E-value=6.7e-05 Score=61.61 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|+|+.|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999987654
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=4.1e-05 Score=62.48 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.++.|+||||||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999987653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=2.8e-05 Score=64.39 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=26.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 116 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~ 116 (287)
-+|...+++|+||+|||||++.|.+... ...|+|.
T Consensus 93 l~~kt~~~~G~SGVGKSTLiN~L~~~~~---~~T~~vs 127 (225)
T d1u0la2 93 LKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVS 127 (225)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-----
T ss_pred hcCCeEEEECCCCCCHHHHHHhhcchhh---hhccCcc
Confidence 4689999999999999999999988665 5556654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.40 E-value=4.2e-05 Score=59.29 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|+|++||||||+++.|+-.+.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 56999999999999999998775
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.39 E-value=3.8e-05 Score=65.65 Aligned_cols=61 Identities=11% Similarity=-0.111 Sum_probs=40.9
Q ss_pred CCCCCcccCCchhhhhh----hccCccEEEEcCcccCCChhhHHHHHH----hhc--CceEEEeCHHHHHH
Q 023126 180 APSFDHGVGDPVEDDIL----VGLQHKVVIVDGNYLFLDGGVWKDVSS----MFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 180 ~~~lSgG~~qrv~ia~a----l~~~a~~li~d~~~lllDe~~~~~l~~----~~~--~~i~vtHd~~~~~~ 240 (287)
+..+|.|+++...++.. ....+.+++.|++=.-|++...+.+.+ ... ..|++||.+..+..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~ 287 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA 287 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh
Confidence 45789999988766444 345567888888877778744444333 332 24789999887643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.37 E-value=5.6e-05 Score=60.40 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+..++.|+||.||||||+++.|+..+.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 446899999999999999999998875
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.31 E-value=2.7e-05 Score=63.47 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.||+||||||.++.|+..+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999887
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.23 E-value=8e-05 Score=59.59 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=26.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+..+.++.|+||.||||||+++.|+..+.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45778999999999999999999998775
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.22 E-value=0.00011 Score=58.42 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|-.+.|+||.||||||.++.|+..+.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~g 28 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNFC 28 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 577788999999999999999998775
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.21 E-value=0.00019 Score=58.56 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=33.2
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCC
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 134 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~ 134 (287)
.+...++.++||+|+||||++-.|+-.+. ..| ..++++.-|.+
T Consensus 7 ~~~~~vi~lvGp~GvGKTTTiaKLA~~~~----~~g----------~kV~lit~Dt~ 49 (207)
T d1ls1a2 7 LKDRNLWFLVGLQGSGKTTTAAKLALYYK----GKG----------RRPLLVAADTQ 49 (207)
T ss_dssp CCSSEEEEEECCTTTTHHHHHHHHHHHHH----HTT----------CCEEEEECCSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH----HCC----------CcEEEEecccc
Confidence 45667899999999999999988988775 112 34788888855
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.20 E-value=0.00012 Score=58.61 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+-.++.|+||.||||||+++.|+..+.
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999999876
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.20 E-value=9.4e-05 Score=58.04 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.|.|++||||||+++.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.20 E-value=9.9e-05 Score=57.44 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|+|++||||||+.+.|+..+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999999999999886
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.19 E-value=0.00017 Score=59.01 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=32.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 134 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~ 134 (287)
.+..+++++||+|+||||++-.|+-.+.. ....++++..|.|
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~--------------~~~kV~lit~Dt~ 50 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD--------------EGKSVVLAAADTF 50 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH--------------TTCCEEEEEECTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCceEEEeeccc
Confidence 45568999999999999999888876641 1234888888865
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=3.3e-05 Score=61.03 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=24.2
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+.+| ++.|+|+|||||||++.+|.-.+.
T Consensus 20 i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 20 FDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp ECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444 678899999999999999997765
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00011 Score=59.44 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=27.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
+++|.||.||||||+.+.|+..+...+-++|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 899999999999999999999987433455654
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.17 E-value=0.00013 Score=60.82 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=27.2
Q ss_pred ccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 74 EIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 74 ~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+....+....+.|.||+|||||||++.|++.+.
T Consensus 25 ~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 25 GKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp TCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred cccCCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 334455566788999999999999999999875
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.17 E-value=0.0001 Score=58.78 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999988763
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00026 Score=57.85 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=38.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~ 156 (287)
..+++++||+|+||||++-.|+-.+. - . ...++++.-|.|- .-..|.+.......+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~---~-~----------g~kV~lit~Dt~R-----~gA~eQL~~~a~~l~v 65 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE---Q-Q----------GKSVMLAAGDTFR-----AAAVEQLQVWGQRNNI 65 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH---T-T----------TCCEEEECCCTTC-----HHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---H-C----------CCcEEEEeccccc-----ccchhhhhhhhhhcCC
Confidence 36899999999999999988887765 1 1 2348888888651 2234555444444443
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00012 Score=58.22 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|+||.||||||.++.|+..+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998876
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.13 E-value=0.00012 Score=58.52 Aligned_cols=23 Identities=48% Similarity=0.716 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|+||||||||||++.|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 56999999999999999988764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.10 E-value=0.00022 Score=58.29 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=35.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~ 156 (287)
+...++.++||+|+||||++-.|+-.+.. ....++++.-|.+- .-..|.+.......+.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~--------------~g~kV~lit~Dt~R-----~ga~eQL~~~a~~l~v 68 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK--------------KGFKVGLVGADVYR-----PAALEQLQQLGQQIGV 68 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHH--------------TTCCEEEEECCCSS-----HHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH--------------CCCceEEEEeeccc-----cchhHHHHHhccccCc
Confidence 45678999999999999999888876651 12348888888651 2334555554444443
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.09 E-value=0.00016 Score=56.78 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+||.||||||+++.|+..+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 367999999999999999999886
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.09 E-value=0.00014 Score=64.43 Aligned_cols=60 Identities=10% Similarity=-0.032 Sum_probs=42.7
Q ss_pred CCCCcccCCchhhhhhh----ccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 181 PSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al----~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
..+||||+.++++|..+ ..++.++++|++..-||+. +.+.|.++.. ..|++||+..++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ 401 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK 401 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh
Confidence 46799999987775443 4556789999999999984 3344444322 35799999997754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00016 Score=57.43 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.|+||||||||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4688999999999999999887653
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.08 E-value=0.00012 Score=58.32 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|+||.||||||+++.|+-.+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467999999999999999998876
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.08 E-value=2.9e-05 Score=64.51 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 116 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~ 116 (287)
+|.+..++|+||+|||||++.|.|-.. -..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~---~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH---hhhcccc
Confidence 678889999999999999999998766 5566664
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.07 E-value=0.0001 Score=58.79 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|||||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999984
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.05 E-value=0.00016 Score=56.17 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|+|+.||||||+.+.|+..+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999999886
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.04 E-value=0.00018 Score=57.51 Aligned_cols=25 Identities=24% Similarity=0.566 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.++|.+|||||||++.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998775
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.01 E-value=0.00021 Score=56.39 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|+||.||||||+++.|+..+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467999999999999999999886
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00016 Score=55.53 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
|-.++|+|+.++|||||++.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578999999999999999999854
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.97 E-value=0.00017 Score=57.39 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=46.4
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccE
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~ 280 (287)
...++.|.+.++-. .+...++.+|+|..+.+...+|++.| +|...+.+..... ...+..+. ...||+
T Consensus 101 ~~~vi~e~~~~~~~-----~~~~~~d~vI~v~a~~e~r~~Rl~~R---~~~~~~~~~~~~~-~q~~~~~~----~~~aD~ 167 (191)
T d1uf9a_ 101 APLVFLEIPLLFEK-----GWEGRLHGTLLVAAPLEERVRRVMAR---SGLSREEVLARER-AQMPEEEK----RKRATW 167 (191)
T ss_dssp CSEEEEECTTTTTT-----TCGGGSSEEEEECCCHHHHHHHHHTT---TCCTTHHHHHHHT-TSCCHHHH----HHHCSE
T ss_pred cceEEEEeeccccc-----cccccceeEEEEecchhhHHHHHHhc---ccchHHHHHHHHH-hCCCHHHH----HHhCCE
Confidence 55667777655433 34555667889999999988888765 4656665555443 22333332 467999
Q ss_pred EeccC
Q 023126 281 VIKSI 285 (287)
Q Consensus 281 i~~~~ 285 (287)
||+|.
T Consensus 168 vI~N~ 172 (191)
T d1uf9a_ 168 VLENT 172 (191)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 99865
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.96 E-value=0.0002 Score=56.51 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=22.4
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.+.+++.++|++||||||+++.++..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 355678999999999999999987643
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0029 Score=52.50 Aligned_cols=28 Identities=39% Similarity=0.545 Sum_probs=24.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+-+|+++.|.|+.|+|||||+-.|+-.+
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4469999999999999999998887654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.00024 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3579999999999999999984
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.93 E-value=0.00024 Score=55.95 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=22.9
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+..+-.|||+|+.|+|||||++.|.|.
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 344557899999999999999999874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.93 E-value=0.00025 Score=53.82 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+.|+|++|||||||++.+.+-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46799999999999999998754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.92 E-value=0.00015 Score=57.73 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++-+++|-|+.||||||+++.|+..+.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445899999999999999999988764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.00019 Score=55.86 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.|+|+|+.|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.00028 Score=55.94 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=26.1
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-+.+|+++-|.||+|||||||+..++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999998888654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.90 E-value=0.0003 Score=55.34 Aligned_cols=24 Identities=46% Similarity=0.739 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+||.||||||+++.|+..+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467999999999999999998875
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.00029 Score=57.29 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=25.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++|.+++|-|+.||||||+++.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999999875
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.88 E-value=0.00023 Score=55.86 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+|+|+|+.|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00023 Score=55.51 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+|+|+|..++|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.87 E-value=0.00017 Score=56.60 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-|+|+|+.|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999884
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.87 E-value=0.0003 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|.+|||||||++.+.+--
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00036 Score=60.77 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.-++||.|+.|||||||+..|...+.
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999998775
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.0003 Score=56.21 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.|+|+|+.|||||||++.|.|--
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999853
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00033 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+||.||||||.++.|+-.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999998775
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00036 Score=56.29 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.+++|-|+.||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999875
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.80 E-value=0.00012 Score=57.73 Aligned_cols=22 Identities=50% Similarity=0.622 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l 105 (287)
|||+|+.++|||||++.|.|.-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998743
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.79 E-value=0.00039 Score=55.48 Aligned_cols=24 Identities=25% Similarity=0.666 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+||.||||||+++.|+..+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHC
Confidence 678999999999999999998775
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.00044 Score=54.41 Aligned_cols=24 Identities=46% Similarity=0.725 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+||.||||||+++.|+..+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999999876
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.77 E-value=0.00049 Score=55.90 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=25.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.-++|.++-|.|.+||||||+.+.|.-.+
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45788899999999999999999998765
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00022 Score=58.43 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998774
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.68 E-value=0.00025 Score=55.11 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.-.++|+|++|||||||++.|.+-.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999987743
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.65 E-value=0.0002 Score=56.30 Aligned_cols=22 Identities=55% Similarity=0.761 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l 105 (287)
|||+|..++|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.60 E-value=0.00062 Score=55.36 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.+++|-|+.||||||+++.|+..+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 688999999999999999999998875
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.56 E-value=0.00046 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|||||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999988743
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.0007 Score=54.68 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=42.5
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccE
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~ 280 (287)
.+.++.+.++++-- .+...++..|+|..+.+...+|+..| +|...+.+...... ..+..+. ...||+
T Consensus 106 ~~~~~~e~~ll~e~-----~~~~~~~~iI~V~a~~e~r~~R~~~R---~~~~~~~~~~~~~~-Q~~~~~k----~~~aD~ 172 (208)
T d1vhta_ 106 SPYVLWVVPLLVEN-----SLYKKANRVLVVDVSPETQLKRTMQR---DDVTREHVEQILAA-QATREAR----LAVADD 172 (208)
T ss_dssp SSEEEEECTTTTTT-----TGGGGCSEEEEEECCHHHHHHHHHHH---HTCCHHHHHHHHHH-SCCHHHH----HHHCSE
T ss_pred cCCcceeeeecccc-----cccccCCEEEEEeCCHHHHHHHHHHh---hhhhHHHHHHHHHh-CCCHHHH----HHhCCE
Confidence 45666666654421 23445566789999999988888755 23344444333322 1222222 567899
Q ss_pred EeccCC
Q 023126 281 VIKSID 286 (287)
Q Consensus 281 i~~~~~ 286 (287)
||+|..
T Consensus 173 vI~N~~ 178 (208)
T d1vhta_ 173 VIDNNG 178 (208)
T ss_dssp EEECSS
T ss_pred EEECCC
Confidence 997753
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.50 E-value=0.00077 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999885
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.49 E-value=0.00075 Score=54.99 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.||+|+|||||+++|+..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 477999999999999999998764
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.48 E-value=0.00036 Score=60.69 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.+.-+.|.|+.|||||||++.|++.++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 55666688999999999999999999886
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.47 E-value=0.00091 Score=55.02 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.|.||+|+||||++++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999875
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.43 E-value=0.00079 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-|+|+|+.|||||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.41 E-value=0.00083 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
++.-.++|+|.+|||||||++.|.+.
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence 34457899999999999999999874
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.41 E-value=0.00097 Score=51.34 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|++|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999988763
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.40 E-value=0.0013 Score=51.03 Aligned_cols=29 Identities=38% Similarity=0.505 Sum_probs=26.8
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|.+++|-|+=|||||||.|.++.-+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 47999999999999999999999998875
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.34 E-value=0.00026 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..++|||||++.|.|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.33 E-value=0.0013 Score=56.95 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..-++||.|+.|||||||+..|...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.33 E-value=0.0011 Score=54.23 Aligned_cols=24 Identities=50% Similarity=0.750 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+-+.||.|+||||++++|+..+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 367899999999999999999886
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.31 E-value=0.001 Score=57.24 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.-+.+.||+|+|||+|+|.|+..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc
Confidence 445567899999999999999999875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=0.0012 Score=51.20 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4789999999999999998763
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.0012 Score=54.59 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=22.2
Q ss_pred eecC-CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEA-RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~-GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.+ +.++.|.|||.+||||++|.++=.
T Consensus 36 ~l~~~~~~~iiTGpN~~GKSt~lk~i~l~ 64 (234)
T d1wb9a2 36 NLSPQRRMLIITGPNMGGKSTYMRQTALI 64 (234)
T ss_dssp EECSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred EECCCceEEEEeccCchhhHHHHHHHHHH
Confidence 3443 467889999999999999988643
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.29 E-value=0.0012 Score=51.06 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++++|..|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4789999999999999988764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.27 E-value=0.00079 Score=56.36 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..|+|||||++.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999964
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.27 E-value=0.0012 Score=54.06 Aligned_cols=24 Identities=42% Similarity=0.681 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+-+.||.|+||||+++++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999875
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.24 E-value=0.00091 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-+||+|+..||||||++.|.+.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHHHHHHh
Confidence 4899999999999999999874
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0012 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|++|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988874
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.00046 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.-.|+|+|+.++|||||++.|.+.-
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998743
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.23 E-value=0.0013 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|.||+|+||||+++.++..+.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHHc
Confidence 67999999999999999998763
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0014 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988763
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.0011 Score=53.79 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=24.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
-+.+|+++-|.|+.|||||||+..++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 388999999999999999999877653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.21 E-value=0.0013 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++||+|+..||||||++.|.+...
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~ 30 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAV 30 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhcc
Confidence 589999999999999999998653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.15 E-value=0.0016 Score=50.04 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++++|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988775
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.13 E-value=0.0015 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
++++.|.|||.+||||++|.++=.
T Consensus 35 ~~~~iiTGpN~~GKSt~lk~i~l~ 58 (224)
T d1ewqa2 35 HELVLITGPNMAGKSTFLRQTALI 58 (224)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCccccchhhhhhHHH
Confidence 357889999999999999977643
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.0018 Score=52.68 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=25.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-+.+|.++.|.|++|||||||+..++..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999999888754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.0012 Score=56.23 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=31.5
Q ss_pred cCccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 72 RREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 72 ~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.|..+.+-+|+..+|+|++|+|||||+..|+....
T Consensus 34 ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 34 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred eeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 37778999999999999999999999999988664
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.04 E-value=0.0019 Score=52.73 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
-+.+|+++.|.|++|||||||+--++-
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 388999999999999999999876654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0017 Score=49.84 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++++|.+|+|||||++.+.+-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.02 E-value=0.0018 Score=52.05 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=22.5
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHH
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVV 102 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~ 102 (287)
+++|+++-|.|++|+|||||+.-++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999986544
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0019 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G 103 (287)
-.++|+|+.|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3688999999999999999876
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.99 E-value=0.0021 Score=50.30 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.99 E-value=0.0018 Score=53.26 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.++.|.||.|+|||||++.++..+.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 456889999999999999998877654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.99 E-value=0.002 Score=52.49 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+.+|.++.|.|++|||||||+.-++-..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999997776654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.98 E-value=0.002 Score=53.52 Aligned_cols=26 Identities=42% Similarity=0.595 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..-+.|.||.|||||+|++.|+..+.
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECcCCCCHHHHHHHHhhccc
Confidence 34577999999999999999999875
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.0021 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.|+|++|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999987764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0024 Score=53.34 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=24.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+....-+.|.||+|+|||+|++.|+..+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 33445677999999999999999999886
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.96 E-value=0.0021 Score=51.88 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=25.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+.+|+++-|.|++|+|||||+--++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999998777554
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.96 E-value=0.0022 Score=53.56 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=25.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-+.+|+++.|.|++|+|||||+.-|+-.
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 4889999999999999999999888753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0024 Score=49.09 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.|+|..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988864
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.92 E-value=0.0032 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.|.||.|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999886
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0021 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998863
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0022 Score=49.56 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998776
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.90 E-value=0.0012 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999998865
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0022 Score=49.06 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|..|+|||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998863
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0021 Score=49.60 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++|+|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999988775
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0025 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.|+|.+|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999888764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0019 Score=50.58 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 478999999999999998875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.86 E-value=0.0027 Score=48.85 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++|+|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.86 E-value=0.0017 Score=50.70 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=23.0
Q ss_pred cceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 75 IPVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 75 ~~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.-++--.++|+|++|+|||||++.+.+-
T Consensus 11 l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 11 LWGSNKELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp GTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HhCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 334444457889999999999999987643
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.85 E-value=0.0024 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+-|.||+|+||||++++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 56899999999999999998765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.84 E-value=0.0027 Score=53.18 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=24.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+..-+-|.||+|+|||+|++.|++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44455677999999999999999999875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.84 E-value=0.0028 Score=48.49 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.|+|..|+|||||++.+.+-
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.78 E-value=0.0018 Score=57.74 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.|+|+|..|+|||||++.|.|.-
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999954
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.78 E-value=0.0036 Score=49.16 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
.+.|+|.+|+|||||++.+. ......|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCCCCCeee
Confidence 57899999999999999994 3332236666
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.003 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0029 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++++|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998873
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.76 E-value=0.0031 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++||.|+-||||||.++.|...+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 479999999999999999997654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0031 Score=48.84 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++|+|++|+|||||++.+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999988776
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.74 E-value=0.0029 Score=52.54 Aligned_cols=25 Identities=44% Similarity=0.626 Sum_probs=22.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.-+.+.||.|+|||+|++.|+..+.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEecCCCCChhHHHHHHHHHcC
Confidence 3478999999999999999999775
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0026 Score=49.04 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999988753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.72 E-value=0.0043 Score=48.29 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=24.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
.+.|+|..|+|||||++.+..... |+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~---~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE---AGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS---CCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC---CCccE
Confidence 478999999999999998877655 77774
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0034 Score=48.33 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|..|+|||||++.+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999987764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0031 Score=48.98 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999887764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.0031 Score=48.74 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.0032 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 4789999999999999988763
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.60 E-value=0.0045 Score=50.12 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HhcccCCCCcc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKAS 114 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G-~l~~~~p~~G~ 114 (287)
.+.|+|.+|+|||||++.+.. ... |+-|-
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~---pTiG~ 37 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVV---LTSGI 37 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC---CCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC---CCCCe
Confidence 578999999999999988743 333 77773
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0035 Score=48.56 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.|+|..|+|||||++.+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998775
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.0039 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.++|..|+|||||++.+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988853
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.0037 Score=50.46 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+-|.||.|+||||++++|+..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 66899999999999999998764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.55 E-value=0.0042 Score=48.84 Aligned_cols=26 Identities=35% Similarity=0.288 Sum_probs=21.1
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
.-.|.=+.|.|++|+|||||+-.|..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44677789999999999999876553
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0043 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.|+|+.|+|||||++.+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988863
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0042 Score=48.49 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++|+|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988776
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0041 Score=50.61 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|-|.-||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 5789999999999999999998874
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.0035 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|.||+|+||||+++.++..+.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~ 58 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIF 58 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 67999999999999999998763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.43 E-value=0.0043 Score=48.84 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=20.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVV 102 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~ 102 (287)
-.|.=+.|.|++|+|||||+-.|.
T Consensus 13 ~~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 13 VFGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHH
Confidence 367788999999999999986654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0036 Score=48.48 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 47899999999999999988753
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.42 E-value=0.0031 Score=51.98 Aligned_cols=24 Identities=46% Similarity=0.653 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 456679999999999999998875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.40 E-value=0.005 Score=47.48 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998876
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.36 E-value=0.0059 Score=50.76 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=22.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.-+-|.||.|+|||+|++.++....
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceeEEecCCCCCchHHHHHHHHHhC
Confidence 3467899999999999999999775
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.0051 Score=47.30 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.0056 Score=47.71 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++++|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999987764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0058 Score=46.84 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.|+|..|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.25 E-value=0.0058 Score=47.01 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998765
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.21 E-value=0.0032 Score=48.75 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=8.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987775
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0058 Score=47.81 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 479999999999999988765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.15 E-value=0.0047 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-+||+|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 37999999999999999999855
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.0029 Score=55.52 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=22.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
.+..+.+.+|+|+|||||||++.+|.=
T Consensus 21 ~f~~~~l~~i~G~NGsGKS~ileAi~~ 47 (427)
T d1w1wa_ 21 GFGESNFTSIIGPNGSGKSNMMDAISF 47 (427)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred eCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 455455889999999999999999963
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.14 E-value=0.0032 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
--+-|.|+.|+|||||++.++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCC
Confidence 3578999999999999999999985
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.11 E-value=0.0072 Score=52.95 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=27.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.++..+.+.||.|+||||+++.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 456778999999999999999999999986
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.10 E-value=0.0065 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+||+|+-+||||||+..|.....
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~g 28 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVAA 28 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Confidence 379999999999999999976543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.003 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.++|+|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999987654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.04 E-value=0.0062 Score=54.86 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
=+.++||+|||||-|++.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999885
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.0083 Score=51.41 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.-.+.++||+|+|||.|++.|+..+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 344788999999999999999999885
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.02 E-value=0.0066 Score=47.29 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.|+|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987665
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.00 E-value=0.0071 Score=47.19 Aligned_cols=28 Identities=32% Similarity=0.288 Sum_probs=21.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
+..-.|.=|.|.|++|+|||||+-.+..
T Consensus 10 ~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 10 LVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3445677889999999999999855543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.00 E-value=0.0099 Score=52.70 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=23.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.=++.|.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 4455778999999999999999998875
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.95 E-value=0.0055 Score=51.64 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=28.9
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
|..+.+-+|+.++|+|+.|+|||||+..|+-..
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 666889999999999999999999988777553
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.0043 Score=52.38 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|+|+||-++|||||++.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999998553
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0076 Score=50.42 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=25.9
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+..|.++-|.||+|||||||+-.++....
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 478899999999999999999977776654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.91 E-value=0.0053 Score=47.35 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.|+|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.86 E-value=0.011 Score=45.90 Aligned_cols=31 Identities=23% Similarity=0.160 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
.+.|+|..|+|||||++.+..-.....|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 4689999999999999988765432235544
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.0082 Score=47.11 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|..|+|||||++.+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999877653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.73 E-value=0.0079 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-++|+|+.|+|||||+..|...-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Confidence 47999999999999999996543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.62 E-value=0.011 Score=49.53 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
...+++|.|..|.|||||++.+....
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999987643
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.57 E-value=0.0082 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-+||+|+.|||||||+..|.-.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~ 29 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYY 29 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5899999999999999998643
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.54 E-value=0.01 Score=49.72 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=25.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+..|.++-|.||+|+|||||+-.++....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q 85 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 85 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh
Confidence 488999999999999999999866666554
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.46 E-value=0.01 Score=49.69 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=26.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-++.|.++-|.||+|||||||+-.++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 378899999999999999999988887665
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.43 E-value=0.0079 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++++|.-+||||||++.|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999953
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.34 E-value=0.028 Score=47.38 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+-.+||+|..-||||||++.|++.-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999999853
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.28 E-value=0.0082 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l 105 (287)
++++|.-.||||||++.|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 6799999999999999999953
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=94.27 E-value=0.014 Score=46.43 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+||+|+-.+|||||++.|.+.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~ 28 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILA 28 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHH
Confidence 489999999999999999988764
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=94.00 E-value=0.01 Score=49.89 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=28.6
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
|..+.+-+|+.++|+|++|+|||+|+..+.-..
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred eccccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence 777899999999999999999999998755433
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.94 E-value=0.011 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-|||+|..-+|||||++.|+|.-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 38999999999999999998864
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.018 Score=45.98 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+-+.||.|+||||+++.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 477899999999999999999874
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.74 E-value=0.02 Score=47.91 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+||+|-.-+|||||++.|++.-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999754
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.56 E-value=0.025 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+-|.||+|+||||++++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 466889999999999999998875
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.016 Score=46.91 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G 103 (287)
++.|.|.=|||||||++.+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 678899999999999988765
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.30 E-value=0.029 Score=47.91 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|.-++.++||+|+|||.|++.|+-.+-
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHhc
Confidence 334678999999999999999999873
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=93.28 E-value=0.023 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.|-|+-||||||+++.|+..+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 578899999999999999998875
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.24 E-value=0.025 Score=44.85 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=22.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|-=-+||+|+-.+|||||++.|.|...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 3334689999999999999999988553
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.08 E-value=0.023 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-+|++|+-++|||||+..|....
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~~~ 27 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLMDR 27 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHc
Confidence 37999999999999999886543
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.87 E-value=0.033 Score=47.67 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-++.+.||.|+|||.|++.|++.+.
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHHhc
Confidence 3555689999999999999999875
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.70 E-value=0.017 Score=48.70 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=27.5
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
|..+.+-+|+.++|+|+.|+|||||+..++..
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence 66688999999999999999999998655543
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.063 Score=39.10 Aligned_cols=28 Identities=7% Similarity=0.106 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++|-.+-+-|-+||||||+.+.|.--+.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~ 31 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFL 31 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999976664
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=92.60 E-value=0.026 Score=48.60 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.|.|-|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 578999999999999999987654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.45 E-value=0.029 Score=49.32 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=19.0
Q ss_pred eEEEEECCCCCCHHHHHHHHH-HHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVV-RRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~-G~l 105 (287)
..+.|+|++|||||++++.|. ..+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~ 75 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGL 75 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHH
Confidence 457999999999999997554 444
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=92.41 E-value=0.042 Score=44.40 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++++|+-.+|||||+..|.....
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~g 34 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDSK 34 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 69999999999999999976553
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=92.17 E-value=0.029 Score=48.34 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.|-|+-||||||+++.|+..+.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999998775
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.04 E-value=0.048 Score=43.69 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+-|.||+|+|||-|+++++....
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 57999999999999999998765
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.95 E-value=0.047 Score=47.55 Aligned_cols=28 Identities=29% Similarity=0.625 Sum_probs=22.8
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.++.+ -++||+|+|||-|+|.|+.++.
T Consensus 66 ~p~~ni-LfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 66 LSKSNI-LLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCCCCE-EEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCcce-eeeCCCCccHHHHHHHHHhhcc
Confidence 445555 5779999999999999998764
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.86 E-value=0.055 Score=42.87 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..-+.|+|+.|.|||+++.-|+-.+.
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHHHHH
Confidence 34567999999999999999998764
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.72 E-value=0.055 Score=45.07 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.-+.|+||.|+|||++++-++-.+.
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHHH
Confidence 4567999999999999999998764
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.49 E-value=0.047 Score=44.61 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-++|+|+-++|||||+..|+-..
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll~~~ 30 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLIYKC 30 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Confidence 47999999999999999887544
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=90.87 E-value=0.051 Score=51.32 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=31.1
Q ss_pred hhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 68 LCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 68 v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
...++.....-.+.+.+.|.|+||||||+-.|.|...+-
T Consensus 73 A~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 111 (684)
T d1lkxa_ 73 ANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLT 111 (684)
T ss_dssp HHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 334445555567889999999999999999999988764
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=90.67 E-value=0.061 Score=45.64 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.6
Q ss_pred cCCeEEEEECCCCCCHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLA 98 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLl 98 (287)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46788899999999999975
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.14 E-value=0.054 Score=44.39 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l 105 (287)
++|+|+-++|||||+..|....
T Consensus 27 i~iiGHVD~GKSTL~~~Ll~~~ 48 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNILFLT 48 (245)
T ss_dssp EEEEECGGGTHHHHHHHHHHHT
T ss_pred EEEEeeCCCCHHHHHHHHHHHc
Confidence 8999999999999999986433
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=90.05 E-value=0.067 Score=45.53 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.3
Q ss_pred cCCeEEEEECCCCCCHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLA 98 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLl 98 (287)
+.|++..+.|.||+|||||.
T Consensus 12 ~~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 12 KEGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TTCCEEEEEECTTSCHHHHT
T ss_pred CCCCEEEEEccCCCCccccc
Confidence 35788899999999999964
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.03 E-value=0.06 Score=46.43 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q 023126 84 VGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~ 104 (287)
+||+|+-++|||||+..|.-.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~ 40 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQR 40 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 899999999999999999643
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.01 E-value=0.11 Score=49.27 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=27.9
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
...+.-.+.+.+.|.|+||||||+-.|.|...+-
T Consensus 117 ~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 117 RSMLDDRQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3333446789999999999999999999988774
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=89.97 E-value=0.1 Score=43.28 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=24.9
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+--.+.|.||.++|||||+++|..++.
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34456888999999999999999999884
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.89 E-value=0.11 Score=41.02 Aligned_cols=27 Identities=7% Similarity=0.019 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.-+.+.||+|+||||+++.++..+.
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~ 40 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVE 40 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 456788999999999999999998775
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=89.66 E-value=0.12 Score=48.97 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.1
Q ss_pred hhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 70 SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 70 ~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+|...+.-.+.+.+.|.|+||||||+-.|.|...+
T Consensus 80 ~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 80 TAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp HHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344444455678999999999999999999998887
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=89.63 E-value=0.065 Score=44.33 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHH-HHHHHHh
Q 023126 84 VGLAGPPGAGKSTLA-AEVVRRI 105 (287)
Q Consensus 84 vgIiG~nGsGKSTLl-k~L~G~l 105 (287)
+.|+|+.||||||++ ..++-++
T Consensus 17 ~lI~g~aGTGKTt~l~~rv~~ll 39 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNKIAHLI 39 (306)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEEeeCCccHHHHHHHHHHHHH
Confidence 578999999999754 5555554
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.52 E-value=0.087 Score=44.85 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=17.7
Q ss_pred cCCeEEEEECCCCCCHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLA 98 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLl 98 (287)
+.|++..+.|-||+|||||.
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46788889999999999987
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=88.95 E-value=0.079 Score=44.27 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHH-HHHHHHh
Q 023126 84 VGLAGPPGAGKSTLA-AEVVRRI 105 (287)
Q Consensus 84 vgIiG~nGsGKSTLl-k~L~G~l 105 (287)
+.|.|+.||||||.+ ..++-++
T Consensus 27 ~lV~g~aGSGKTt~l~~ri~~ll 49 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLTHRIAYLM 49 (318)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHHH
Confidence 568899999999765 4455544
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=88.79 E-value=0.05 Score=39.25 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=20.7
Q ss_pred ecCCeEEEEECCCCCCHHHHH-HHHHHH
Q 023126 78 VEARHIVGLAGPPGAGKSTLA-AEVVRR 104 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLl-k~L~G~ 104 (287)
+++|+.+.|.+|.|||||+.+ ..+...
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~ 31 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAE 31 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHH
Confidence 678999999999999999554 343333
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=88.68 E-value=0.14 Score=49.08 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=29.0
Q ss_pred hcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 71 QRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 71 ~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++...+.-...+.+.|.|+||||||+-.|.|...+-
T Consensus 113 Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 113 AYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp HHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 344444456788999999999999999999998874
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.32 E-value=0.17 Score=43.78 Aligned_cols=23 Identities=39% Similarity=0.712 Sum_probs=18.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVV 102 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~ 102 (287)
.+.++.|.||.|+||||++..+.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~~l 184 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAKLL 184 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHHHH
Confidence 46689999999999999885543
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=88.18 E-value=0.15 Score=48.67 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=28.7
Q ss_pred hcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 71 QRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 71 ~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++...+.-...+.+.|.|+||||||.-.|.|...+-
T Consensus 111 Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 111 AYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp HHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 334444456789999999999999999999988874
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=87.98 E-value=0.15 Score=40.36 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=26.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.+--.+.|.||.++|||+++..|+.++.
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 356667889999999999999999999986
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.64 E-value=0.16 Score=42.01 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+-.++|+|-.-+|||||++.|.|.-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEEecCccchhhhhhhhhccce
Confidence 455799999999999999999998543
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=87.61 E-value=0.12 Score=48.98 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=30.3
Q ss_pred hhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 69 CSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 69 ~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..++...+.-...+.+.|.|+||||||+-.|.+...+-
T Consensus 82 ~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l~ 119 (730)
T d1w7ja2 82 EEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFA 119 (730)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34444445556788999999999999999999998874
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=87.30 E-value=0.16 Score=41.46 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.-|.|.|+.|+||+++++.|...-.
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~ 48 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKLSD 48 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 344578999999999999999987543
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=87.14 E-value=0.37 Score=39.07 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|.|.-|+||||+.-.|+..+.
T Consensus 2 r~Iai~gKGGvGKTT~a~nLA~~LA 26 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQNLTSGLH 26 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHH
Confidence 3688999999999999999998885
|
| >d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF species: Escherichia coli [TaxId: 562]
Probab=87.01 E-value=0.24 Score=38.34 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|+.++||.|-| ||||...+|..++.
T Consensus 1 p~kvI~VTGTn--GKTTt~~mi~~iL~ 25 (214)
T d1gg4a4 1 PARVVALTGSS--GKTSVKEMTAAILS 25 (214)
T ss_dssp CCEEEEEECSS--CHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC--cHHHHHHHHHHHHH
Confidence 67899999999 59999999999996
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=86.33 E-value=0.14 Score=42.15 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=21.4
Q ss_pred ecCCeEEEEECCCCCCHHH--HHHHHHHHh
Q 023126 78 VEARHIVGLAGPPGAGKST--LAAEVVRRI 105 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKST--Llk~L~G~l 105 (287)
+.+|+.+.|.+|.|||||+ |..++....
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~ 35 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI 35 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999997 335554444
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.13 E-value=0.3 Score=38.41 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=22.8
Q ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLA-GPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIi-G~nGsGKSTLlk~L~G~l~ 106 (287)
|.++++. +.-|+||||+.-.|+..+.
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la 28 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALG 28 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 6788888 7789999999999998885
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.71 E-value=0.16 Score=44.37 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|+|++|+|||+++.-|+-.+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~ 68 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIV 68 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999988876543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=85.50 E-value=0.21 Score=36.19 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=15.4
Q ss_pred CeEEEEECCCCCCHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAA 99 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk 99 (287)
-++..|.+|.|||||+++-
T Consensus 8 ~~~~ll~apTGsGKT~~~~ 26 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVP 26 (136)
T ss_dssp CEEEEEECCTTSCTTTHHH
T ss_pred CCEEEEEeCCCCCHHHHHH
Confidence 4566779999999998763
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=85.25 E-value=0.3 Score=37.80 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=22.0
Q ss_pred eEEEEECCC-CCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPP-GAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~n-GsGKSTLlk~L~G~l~ 106 (287)
+.+-|.|-+ |+||||+.-.|+..+.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa 27 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAK 27 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHH
Confidence 467889997 9999999999999885
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=84.11 E-value=0.53 Score=38.29 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.+.|.-|.||||+.-.|+-.+.
T Consensus 9 ~~i~~sGKGGVGKTTvaa~lA~~lA 33 (296)
T d1ihua1 9 PYLFFTGKGGVGKTSISCATAIRLA 33 (296)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCcChHHHHHHHHHHHHH
Confidence 4677899999999999999998885
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.06 E-value=0.63 Score=36.35 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLA-GPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIi-G~nGsGKSTLlk~L~G~l~ 106 (287)
+++|. |.-|+||||+.-.|+..+.
T Consensus 3 vIav~s~KGGvGKTtia~nlA~~la 27 (232)
T d1hyqa_ 3 TITVASGKGGTGKTTITANLGVALA 27 (232)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHHHH
Confidence 56666 8899999999999998885
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=84.05 E-value=0.46 Score=35.05 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=19.9
Q ss_pred CeEEEEECCCCCCHHH-HHHHHHHHh
Q 023126 81 RHIVGLAGPPGAGKST-LAAEVVRRI 105 (287)
Q Consensus 81 GeivgIiG~nGsGKST-Llk~L~G~l 105 (287)
|.+-.|+||=.||||| |++.+....
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~ 27 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLE 27 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHH
Confidence 6778899999999999 666665543
|