Citrus Sinensis ID: 023154

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
ccHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHccccEEccHHHHHHHHcccccHHHcccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccEEEEEEEccccccEEEcccccHHHHHHHHHHHHHc
cHHHHHHHHHHHHcccccccEEEEEEcHHHHHHHHHHHHHHHHccEEEEEEccHHHHHccccccEEEEEEccEEEEEEEEccccEEEEEHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccEEEEEEccccccEEEcccccHHHHHHHHHHHHcc
MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLrgvsfiqipTTVMAQvdssvggktginhrLGKNligafyqpqcvlvdtdtlntlpdrELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENkaevvsldekesgLRATLNLghtfghaietgfgygqwlhgEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILqqaklptappdtmTVEMFKSIMAVDKKVADGLLRLILLkgplgncvftgdydrkalDDTLYAFCKS
MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILqqaklptappdtMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEavaagmvmavdmSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADgllrlillkgplgNCVFTGDYDRKALDDTLYAFCKS
*****KVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC**
MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
B8GPV3361 3-dehydroquinate synthase yes no 0.975 0.772 0.642 1e-105
Q31DP9358 3-dehydroquinate synthase yes no 0.986 0.787 0.632 1e-103
B1J2J5365 3-dehydroquinate synthase yes no 0.979 0.767 0.640 1e-98
A6VDF9368 3-dehydroquinate synthase yes no 0.972 0.755 0.630 5e-98
Q02EX9368 3-dehydroquinate synthase yes no 0.972 0.755 0.627 2e-97
A4XPQ2367 3-dehydroquinate synthase yes no 0.972 0.757 0.645 3e-97
Q88CV2365 3-dehydroquinate synthase yes no 0.979 0.767 0.637 3e-97
Q1IGA7365 3-dehydroquinate synthase yes no 0.979 0.767 0.633 4e-97
P34002368 3-dehydroquinate synthase yes no 0.972 0.755 0.627 5e-97
B7V3D1368 3-dehydroquinate synthase yes no 0.972 0.755 0.623 9e-97
>sp|B8GPV3|AROB_THISH 3-dehydroquinate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=aroB PE=3 SV=1 Back     alignment and function desciption
 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/280 (64%), Positives = 220/280 (78%), Gaps = 1/280 (0%)

Query: 1   MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDS 60
           M+TL +V+   +E+R DR+ T VALGGGVIGD+ G+AAASY RGV FIQ+PTT+++QVDS
Sbjct: 76  METLNQVYTALLEARFDRKATLVALGGGVIGDITGFAAASYQRGVDFIQVPTTLLSQVDS 135

Query: 61  SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF 120
           SVGGKTG+NH LGKN+IGAF+QP+CV++DTDTL+TLPDREL +G+AEVIKYGLI D  FF
Sbjct: 136 SVGGKTGVNHPLGKNMIGAFHQPRCVVIDTDTLDTLPDRELRAGIAEVIKYGLICDRPFF 195

Query: 121 EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGF 180
           +W E NM +L+ARDP A AYAI RSC +KA+VV+ DE+E G RA LNLGHTFGHAIETG 
Sbjct: 196 DWLEANMDRLLARDPEALAYAIHRSCHDKAQVVAEDEREGGRRAILNLGHTFGHAIETGM 255

Query: 181 GYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240
           GYG WLHGE VA GMVMA  MS RLGW+D   + R   ++ +A LP  PP  +T E F  
Sbjct: 256 GYGVWLHGEGVATGMVMAARMSRRLGWLDAEDLHRTEALIARAGLPVEPPPEITAERFAE 315

Query: 241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 280
           +M+VDKKV DG LRL+LL+G +G  V T D+D  ALD TL
Sbjct: 316 LMSVDKKVLDGQLRLVLLRG-IGEAVVTADFDPAALDATL 354

Thioalkalivibrio sp. (strain HL-EbGR7) (taxid: 396588)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4
>sp|Q31DP9|AROB_THICR 3-dehydroquinate synthase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|B1J2J5|AROB_PSEPW 3-dehydroquinate synthase OS=Pseudomonas putida (strain W619) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|A6VDF9|AROB_PSEA7 3-dehydroquinate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|Q02EX9|AROB_PSEAB 3-dehydroquinate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|A4XPQ2|AROB_PSEMY 3-dehydroquinate synthase OS=Pseudomonas mendocina (strain ymp) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|Q88CV2|AROB_PSEPK 3-dehydroquinate synthase OS=Pseudomonas putida (strain KT2440) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|Q1IGA7|AROB_PSEE4 3-dehydroquinate synthase OS=Pseudomonas entomophila (strain L48) GN=aroB PE=3 SV=1 Back     alignment and function description
>sp|P34002|AROB_PSEAE 3-dehydroquinate synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=aroB PE=3 SV=2 Back     alignment and function description
>sp|B7V3D1|AROB_PSEA8 3-dehydroquinate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=aroB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
76782192 459 putative 3-dehydroquinate synthase [Fagu 0.996 0.620 0.936 1e-159
224134046 443 3-dehydroquinate synthase [Populus trich 1.0 0.645 0.930 1e-156
118485624 443 unknown [Populus trichocarpa] 1.0 0.645 0.930 1e-156
222136863 456 3-dehydroquinate synthase [Vitis vinifer 1.0 0.627 0.916 1e-156
147858670 456 hypothetical protein VITISV_039705 [Viti 1.0 0.627 0.916 1e-156
225431071 456 PREDICTED: 3-dehydroquinate synthase [Vi 1.0 0.627 0.916 1e-156
449456829 452 PREDICTED: 3-dehydroquinate synthase-lik 1.0 0.632 0.923 1e-156
224134050375 3-dehydroquinate synthase [Populus trich 1.0 0.762 0.930 1e-155
356538307 437 PREDICTED: 3-dehydroquinate synthase-lik 1.0 0.654 0.909 1e-155
346229111 437 3-dehydroquinate synthase [Glycine max] 1.0 0.654 0.902 1e-153
>gi|76782192|gb|ABA54866.1| putative 3-dehydroquinate synthase [Fagus sylvatica] Back     alignment and taxonomy information
 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/285 (93%), Positives = 275/285 (96%)

Query: 1   MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDS 60
           MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG++FIQIPTTVMAQVDS
Sbjct: 174 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGINFIQIPTTVMAQVDS 233

Query: 61  SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF 120
           SVGGKTGINH LGKNLIGAFYQPQCVL+DTDTLNTLPDRELASGLAEVIKYGLIRDAEFF
Sbjct: 234 SVGGKTGINHHLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF 293

Query: 121 EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGF 180
           EWQE+N+  LMARDP A AYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGF
Sbjct: 294 EWQEKNIQALMARDPNALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGF 353

Query: 181 GYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240
           GYGQWLHGEAVA GMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPT PP+ MTVEMFKS
Sbjct: 354 GYGQWLHGEAVAVGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTFPPEIMTVEMFKS 413

Query: 241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 285
           +MAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALD+TL AF K
Sbjct: 414 VMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLRAFVK 458

Source: Fagus sylvatica

Species: Fagus sylvatica

Genus: Fagus

Family: Fagaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224134046|ref|XP_002327742.1| 3-dehydroquinate synthase [Populus trichocarpa] gi|222836827|gb|EEE75220.1| 3-dehydroquinate synthase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118485624|gb|ABK94662.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|222136863|gb|ACM45081.1| 3-dehydroquinate synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147858670|emb|CAN82907.1| hypothetical protein VITISV_039705 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431071|ref|XP_002263236.1| PREDICTED: 3-dehydroquinate synthase [Vitis vinifera] gi|297734973|emb|CBI17335.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449456829|ref|XP_004146151.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] gi|449495064|ref|XP_004159724.1| PREDICTED: 3-dehydroquinate synthase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224134050|ref|XP_002327743.1| 3-dehydroquinate synthase [Populus trichocarpa] gi|222836828|gb|EEE75221.1| 3-dehydroquinate synthase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356538307|ref|XP_003537645.1| PREDICTED: 3-dehydroquinate synthase-like [Glycine max] Back     alignment and taxonomy information
>gi|346229111|gb|AEO21429.1| 3-dehydroquinate synthase [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2156942442 AT5G66120 [Arabidopsis thalian 1.0 0.647 0.821 2.1e-123
TIGR_CMR|SO_0287359 SO_0287 "3-dehydroquinate synt 0.856 0.682 0.563 8.9e-70
UNIPROTKB|Q9KNV2361 aroB "3-dehydroquinate synthas 0.867 0.686 0.556 1.3e-68
TIGR_CMR|VC_2628361 VC_2628 "3-dehydroquinate synt 0.867 0.686 0.556 1.3e-68
UNIPROTKB|P07639362 aroB [Escherichia coli K-12 (t 0.846 0.668 0.566 2.7e-68
TIGR_CMR|GSU_2025362 GSU_2025 "3-dehydroquinate syn 0.863 0.682 0.512 1e-61
TIGR_CMR|CPS_0473354 CPS_0473 "3-dehydroquinate syn 0.804 0.649 0.504 1.3e-59
TIGR_CMR|CBU_1893360 CBU_1893 "3-dehydroquinate syn 0.814 0.647 0.504 4e-58
TIGR_CMR|SPO_1635370 SPO_1635 "3-dehydroquinate syn 0.958 0.740 0.452 1.9e-51
TIGR_CMR|CHY_0629529 CHY_0629 "shikimate kinase/3-d 0.825 0.446 0.469 1.5e-49
TAIR|locus:2156942 AT5G66120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 235/286 (82%), Positives = 249/286 (87%)

Query:     1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDS 60
             MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV+FIQIPTTVMAQVDS
Sbjct:   157 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDS 216

Query:    61 SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF 120
             SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRE+ASGLAEVIKYGLIRDAEFF
Sbjct:   217 SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDREMASGLAEVIKYGLIRDAEFF 276

Query:   121 EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGF 180
             EWQE+N+  L+ARDP A A+AIKRSCENKA+VVS DEKESGLRATLNLGHTFGHAIETGF
Sbjct:   277 EWQEKNIEALLARDPAALAFAIKRSCENKADVVSQDEKESGLRATLNLGHTFGHAIETGF 336

Query:   181 GYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240
             GYG+WLHGE            SYRLGWID+SIVKRV+ IL +AKLPT PP++MTV MFKS
Sbjct:   337 GYGEWLHGEAVAAGTVMAVDMSYRLGWIDESIVKRVNKILVRAKLPTTPPESMTVSMFKS 396

Query:   241 IMAVDKKVADXXXXXXXXXXXXXNCVFTGDYDRKALDDTLYAFCKS 286
             IMAVDKKVAD             NCVFTGDYDR+ALD TL AF KS
Sbjct:   397 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDREALDATLRAFSKS 442
GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006744 "ubiquinone biosynthetic process" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TIGR_CMR|SO_0287 SO_0287 "3-dehydroquinate synthase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNV2 aroB "3-dehydroquinate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2628 VC_2628 "3-dehydroquinate synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P07639 aroB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2025 GSU_2025 "3-dehydroquinate synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0473 CPS_0473 "3-dehydroquinate synthase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1893 CBU_1893 "3-dehydroquinate synthase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1635 SPO_1635 "3-dehydroquinate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0629 CHY_0629 "shikimate kinase/3-dehydroquinate synthase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q31DP9AROB_THICR4, ., 2, ., 3, ., 40.63250.98600.7877yesno
B7IAV6AROB_ACIB54, ., 2, ., 3, ., 40.57970.95800.7611yesno
A3P066AROB_BURP04, ., 2, ., 3, ., 40.59680.89860.7158yesno
B1YRS4AROB_BURA44, ., 2, ., 3, ., 40.57290.95800.7632yesno
Q1IGA7AROB_PSEE44, ., 2, ., 3, ., 40.63340.97900.7671yesno
B0VQ34AROB_ACIBS4, ., 2, ., 3, ., 40.57970.95800.7611yesno
A4XPQ2AROB_PSEMY4, ., 2, ., 3, ., 40.64510.97200.7574yesno
A3MPY1AROB_BURM74, ., 2, ., 3, ., 40.59680.89860.7158yesno
Q21H84AROB_SACD24, ., 2, ., 3, ., 40.60710.97550.7707yesno
Q4KJI8AROB_PSEF54, ., 2, ., 3, ., 40.62270.97900.7650yesno
A9ADP0AROB_BURM14, ., 2, ., 3, ., 40.57650.95800.7632yesno
Q60BY2AROB_METCA4, ., 2, ., 3, ., 40.61050.99300.7910yesno
Q62GB0AROB_BURMA4, ., 2, ., 3, ., 40.59680.89860.7158yesno
P34002AROB_PSEAE4, ., 2, ., 3, ., 40.62720.97200.7554yesno
B0V8M9AROB_ACIBY4, ., 2, ., 3, ., 40.57970.95800.7611yesno
Q0AJ12AROB_NITEC4, ., 2, ., 3, ., 40.61620.93000.7208yesno
B4E603AROB_BURCJ4, ., 2, ., 3, ., 40.56930.95800.7632yesno
Q39KC4AROB_BURS34, ., 2, ., 3, ., 40.57290.95800.7632yesno
Q0BJ01AROB_BURCM4, ., 2, ., 3, ., 40.56930.95800.7632yesno
A3NED2AROB_BURP64, ., 2, ., 3, ., 40.59680.89860.7158yesno
Q5P5P3AROB_AROAE4, ., 2, ., 3, ., 40.57590.97550.775yesno
Q82TB9AROB_NITEU4, ., 2, ., 3, ., 40.63810.89510.6937yesno
Q02EX9AROB_PSEAB4, ., 2, ., 3, ., 40.62720.97200.7554yesno
A1V8D7AROB_BURMS4, ., 2, ., 3, ., 40.59680.89860.7158yesno
Q3JEG3AROB_NITOC4, ., 2, ., 3, ., 40.60710.97550.7771yesno
A1KBQ4AROB_AZOSB4, ., 2, ., 3, ., 40.61560.93000.7388yesno
B7GVP5AROB_ACIB34, ., 2, ., 3, ., 40.57970.95800.7611yesno
C3KAI3AROB_PSEFS4, ., 2, ., 3, ., 40.62270.97900.7650yesno
Q3JMW1AROB_BURP14, ., 2, ., 3, ., 40.59680.89860.7158yesno
C5BRJ7AROB_TERTT4, ., 2, ., 3, ., 40.59500.98950.7839yesno
B2I0J2AROB_ACIBC4, ., 2, ., 3, ., 40.57970.95800.7611yesno
A2S718AROB_BURM94, ., 2, ., 3, ., 40.59680.89860.7158yesno
A6W2T3AROB_MARMS4, ., 2, ., 3, ., 40.57140.97550.7581yesno
Q48PH0AROB_PSE144, ., 2, ., 3, ., 40.61560.97900.7629yesno
Q4ZZE3AROB_PSEU24, ., 2, ., 3, ., 40.61200.97900.7629yesno
B1J2J5AROB_PSEPW4, ., 2, ., 3, ., 40.64050.97900.7671yesno
B8GPV3AROB_THISH4, ., 2, ., 3, ., 40.64280.97550.7728yesno
Q88CV2AROB_PSEPK4, ., 2, ., 3, ., 40.63700.97900.7671yesno
Q3SLY4AROB_THIDA4, ., 2, ., 3, ., 40.61420.92650.7381yesno
Q4FQI3AROB_PSYA24, ., 2, ., 3, ., 40.56110.96500.7113yesno
B7V3D1AROB_PSEA84, ., 2, ., 3, ., 40.62360.97200.7554yesno
B3R7B8AROB_CUPTR4, ., 2, ., 3, ., 40.57970.95100.7391yesno
A8GZ30AROB_SHEPA4, ., 2, ., 3, ., 40.57140.97550.7771yesno
A6VDF9AROB_PSEA74, ., 2, ., 3, ., 40.63080.97200.7554yesno
A4VH14AROB_PSEU54, ., 2, ., 3, ., 40.61560.97900.7629yesno
Q3KJA1AROB_PSEPF4, ., 2, ., 3, ., 40.62270.97900.7650yesno
Q87V15AROB_PSESM4, ., 2, ., 3, ., 40.61560.97900.7629yesno
A5WAB1AROB_PSEP14, ., 2, ., 3, ., 40.63340.97900.7671yesno
Q63Q57AROB_BURPS4, ., 2, ., 3, ., 40.59680.89860.7158yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.3.40.914
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
PLN02834433 PLN02834, PLN02834, 3-dehydroquinate synthase 0.0
PRK00002358 PRK00002, aroB, 3-dehydroquinate synthase; Reviewe 1e-166
cd08195345 cd08195, DHQS, Dehydroquinate synthase (DHQS) cata 1e-164
COG0337360 COG0337, AroB, 3-dehydroquinate synthetase [Amino 1e-146
pfam01761259 pfam01761, DHQ_synthase, 3-dehydroquinate synthase 1e-144
TIGR01357344 TIGR01357, aroB, 3-dehydroquinate synthase 1e-122
cd08169344 cd08169, DHQ-like, Dehydroquinate synthase-like wh 8e-84
cd08197355 cd08197, DOIS, 2-deoxy-scyllo-inosose synthase (DO 4e-65
cd08198369 cd08198, DHQS-like2, Dehydroquinate synthase (DHQS 2e-59
PRK14021542 PRK14021, PRK14021, bifunctional shikimate kinase/ 2e-57
PRK06203389 PRK06203, aroB, 3-dehydroquinate synthase; Reviewe 2e-56
cd08196346 cd08196, DHQS-like1, Dehydroquinate synthase (DHQS 2e-54
cd08199354 cd08199, EEVS, 2-epi-5-epi-valiolone synthase (EEV 2e-50
PRK13951488 PRK13951, PRK13951, bifunctional shikimate kinase/ 1e-39
cd07766332 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like 2e-22
COG0371360 COG0371, GldA, Glycerol dehydrogenase and related 6e-10
cd08175348 cd08175, G1PDH, Glycerol-1-phosphate dehydrogenase 9e-10
pfam13685247 pfam13685, Fe-ADH_2, Iron-containing alcohol dehyd 5e-09
cd08173339 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrog 7e-09
PRK00843350 PRK00843, egsA, NAD(P)-dependent glycerol-1-phosph 6e-07
cd08174331 cd08174, G1PDH-like, Glycerol-1-phosphate dehydrog 5e-06
cd08549332 cd08549, G1PDH_related, Glycerol-1-phosphate_dehyd 8e-05
>gnl|CDD|215448 PLN02834, PLN02834, 3-dehydroquinate synthase Back     alignment and domain information 
 Score =  604 bits (1558), Expect = 0.0
 Identities = 245/286 (85%), Positives = 268/286 (93%)

Query: 1   MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDS 60
           M+TLMKVFDKA+ESRLDRRCTFVALGGGVIGDMCG+AAASY RGV+F+QIPTTVMAQVDS
Sbjct: 146 METLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASYQRGVNFVQIPTTVMAQVDS 205

Query: 61  SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF 120
           SVGGKTG+NH LGKN+IGAFYQPQCVL+DTDTL TLPDRELASG+AEV+KYGLIRDAEFF
Sbjct: 206 SVGGKTGVNHPLGKNMIGAFYQPQCVLIDTDTLATLPDRELASGIAEVVKYGLIRDAEFF 265

Query: 121 EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGF 180
           EWQE NM KL+ARDP A AYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETG 
Sbjct: 266 EWQEANMEKLLARDPGALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGP 325

Query: 181 GYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240
           GYG+WLHGEAVAAG VMA DMSYRLGWID S+V R+  +L++AKLPT PP+ MTVEMFKS
Sbjct: 326 GYGEWLHGEAVAAGTVMAADMSYRLGWIDMSLVNRIFALLKRAKLPTNPPEKMTVEMFKS 385

Query: 241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS 286
           +MAVDKKVADGLLRLILLKG LGNCVFTGD+DR+AL++TL AFCKS
Sbjct: 386 LMAVDKKVADGLLRLILLKGELGNCVFTGDFDREALEETLRAFCKS 431

Length = 433
>gnl|CDD|234565 PRK00002, aroB, 3-dehydroquinate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|173954 cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis Back     alignment and domain information
>gnl|CDD|223414 COG0337, AroB, 3-dehydroquinate synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216685 pfam01761, DHQ_synthase, 3-dehydroquinate synthase Back     alignment and domain information
>gnl|CDD|233374 TIGR01357, aroB, 3-dehydroquinate synthase Back     alignment and domain information
>gnl|CDD|173928 cd08169, DHQ-like, Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase Back     alignment and domain information
>gnl|CDD|173956 cd08197, DOIS, 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics Back     alignment and domain information
>gnl|CDD|173957 cd08198, DHQS-like2, Dehydroquinate synthase (DHQS)-like Back     alignment and domain information
>gnl|CDD|184458 PRK14021, PRK14021, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>gnl|CDD|235740 PRK06203, aroB, 3-dehydroquinate synthase; Reviewed Back     alignment and domain information
>gnl|CDD|173955 cd08196, DHQS-like1, Dehydroquinate synthase (DHQS)-like Back     alignment and domain information
>gnl|CDD|173958 cd08199, EEVS, 2-epi-5-epi-valiolone synthase (EEVS) Back     alignment and domain information
>gnl|CDD|172457 PRK13951, PRK13951, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) Back     alignment and domain information
>gnl|CDD|223448 COG0371, GldA, Glycerol dehydrogenase and related enzymes [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|173934 cd08175, G1PDH, Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner Back     alignment and domain information
>gnl|CDD|222318 pfam13685, Fe-ADH_2, Iron-containing alcohol dehydrogenase Back     alignment and domain information
>gnl|CDD|173932 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme Back     alignment and domain information
>gnl|CDD|179139 PRK00843, egsA, NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|173933 cd08174, G1PDH-like, Glycerol-1-phosphate dehydrogenase-like Back     alignment and domain information
>gnl|CDD|173959 cd08549, G1PDH_related, Glycerol-1-phosphate_dehydrogenase and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
COG0337360 AroB 3-dehydroquinate synthetase [Amino acid trans 100.0
PF01761260 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF 100.0
cd08198369 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DH 100.0
PLN02834433 3-dehydroquinate synthase 100.0
cd08196346 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DH 100.0
cd08197355 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) cataly 100.0
PRK14021542 bifunctional shikimate kinase/3-dehydroquinate syn 100.0
cd08195345 DHQS Dehydroquinate synthase (DHQS) catalyzes the 100.0
cd08169344 DHQ-like Dehydroquinate synthase-like which includ 100.0
PRK13951488 bifunctional shikimate kinase/3-dehydroquinate syn 100.0
PRK00002358 aroB 3-dehydroquinate synthase; Reviewed 100.0
TIGR01357344 aroB 3-dehydroquinate synthase. This model represe 100.0
cd08199354 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi- 100.0
PRK06203389 aroB 3-dehydroquinate synthase; Reviewed 100.0
PRK00843350 egsA NAD(P)-dependent glycerol-1-phosphate dehydro 100.0
cd08549332 G1PDH_related Glycerol-1-phosphate_dehydrogenase a 100.0
cd08174331 G1PDH-like Glycerol-1-phosphate dehydrogenase-like 100.0
cd08173339 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro 100.0
cd07766332 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) 100.0
cd08175348 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) c 100.0
COG0371360 GldA Glycerol dehydrogenase and related enzymes [E 100.0
COG1979384 Uncharacterized oxidoreductases, Fe-dependent alco 100.0
cd08182367 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c 100.0
cd08178398 AAD_C C-terminal alcohol dehydrogenase domain of t 100.0
cd08172347 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol 99.98
cd08180332 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes 99.98
cd08177337 MAR Maleylacetate reductase is involved in many ar 99.98
cd08193376 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze 99.98
PRK09423366 gldA glycerol dehydrogenase; Provisional 99.97
PRK09860383 putative alcohol dehydrogenase; Provisional 99.97
cd08551370 Fe-ADH iron-containing alcohol dehydrogenases (Fe- 99.97
cd08189374 Fe-ADH5 Iron-containing alcohol dehydrogenases-lik 99.97
cd08170351 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox 99.97
cd08188377 Fe-ADH4 Iron-containing alcohol dehydrogenases-lik 99.97
cd08550349 GlyDH-like Glycerol_dehydrogenase-like. Families o 99.97
cd08176377 LPO Lactadehyde:propanediol oxidoreductase (LPO) c 99.97
cd08185380 Fe-ADH1 Iron-containing alcohol dehydrogenases-lik 99.97
cd08192370 Fe-ADH7 Iron-containing alcohol dehydrogenases-lik 99.97
cd08179375 NADPH_BDH NADPH-dependent butanol dehydrogenase in 99.97
TIGR02638379 lactal_redase lactaldehyde reductase. This clade o 99.97
PRK10624382 L-1,2-propanediol oxidoreductase; Provisional 99.97
PRK15454395 ethanol dehydrogenase EutG; Provisional 99.97
cd08191386 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz 99.97
TIGR03405355 Phn_Fe-ADH phosphonate metabolism-associated iron- 99.97
cd08190414 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv 99.97
COG1454377 EutG Alcohol dehydrogenase, class IV [Energy produ 99.97
cd08187382 BDH Butanol dehydrogenase catalyzes the conversion 99.97
cd08186383 Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ 99.97
cd08194375 Fe-ADH6 Iron-containing alcohol dehydrogenases-lik 99.97
cd08183374 Fe-ADH2 Iron-containing alcohol dehydrogenases-lik 99.97
PRK10586362 putative oxidoreductase; Provisional 99.96
PRK15138387 aldehyde reductase; Provisional 99.96
cd08181357 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 99.96
cd08171345 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol 99.96
PRK13805862 bifunctional acetaldehyde-CoA/alcohol dehydrogenas 99.96
PF00465366 Fe-ADH: Iron-containing alcohol dehydrogenase ; In 99.95
PF13685250 Fe-ADH_2: Iron-containing alcohol dehydrogenase; P 99.95
cd08184347 Fe-ADH3 Iron-containing alcohol dehydrogenases-lik 99.95
KOG3857465 consensus Alcohol dehydrogenase, class IV [Energy 99.79
KOG0692 595 consensus Pentafunctional AROM protein [Amino acid 97.36
PRK03202320 6-phosphofructokinase; Provisional 90.5
cd00363338 PFK Phosphofructokinase, a key regulatory enzyme i 90.42
cd00763317 Bacterial_PFK Phosphofructokinase, a key regulator 88.84
TIGR02482301 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokin 88.72
PF00365282 PFK: Phosphofructokinase; InterPro: IPR000023 The 88.54
TIGR02483324 PFK_mixed phosphofructokinase. Members of this fam 88.22
PRK14071360 6-phosphofructokinase; Provisional 87.19
TIGR01162156 purE phosphoribosylaminoimidazole carboxylase, Pur 85.24
PRK06555403 pyrophosphate--fructose-6-phosphate 1-phosphotrans 85.01
PRK14072416 6-phosphofructokinase; Provisional 84.51
PRK07085555 diphosphate--fructose-6-phosphate 1-phosphotransfe 84.06
PLN03028 610 pyrophosphate--fructose-6-phosphate 1-phosphotrans 83.58
TIGR02477539 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosp 82.76
PLN02884411 6-phosphofructokinase 81.77
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-79  Score=559.89  Aligned_cols=283  Identities=60%  Similarity=0.957  Sum_probs=270.7

Q ss_pred             ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023154            1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF   80 (286)
Q Consensus         1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~   80 (286)
                      ++++.++++.+.+.+++|+|.|||+|||+++|++||+||+|+||++||+||||+++|||||+||||+||++.+||++|+|
T Consensus        77 l~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~Aaty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF  156 (360)
T COG0337          77 LETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAAATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAF  156 (360)
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023154           81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES  160 (286)
Q Consensus        81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~  160 (286)
                      |+|++||+||+++.|||+|++++|++|++||+++.|.++|+|++++.+.+.+.+. .++++|.+||+.|+++|.+|++|+
T Consensus       157 ~qP~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~~f~~Le~~~~~l~~~~~-~l~~~I~rs~~~Ka~VV~~De~E~  235 (360)
T COG0337         157 YQPKAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPEFFDWLEENLDALLALDP-ALEELIARSCQIKAEVVAQDEKES  235 (360)
T ss_pred             cCCcEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhhHHhhcCccch
Confidence            9999999999999999999999999999999999999999999998655554444 489999999999999999999999


Q ss_pred             hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 023154          161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS  240 (286)
Q Consensus       161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~  240 (286)
                      |+|++||||||||||+|+.++|..++||||||+||.+.+++|+++|+++.++++|+.++++++|+|+++++..+.+.+++
T Consensus       236 G~R~~LN~GHT~GHAiE~~~~y~~~~HGeAVaiGmv~aa~ls~~lG~~~~~~~~r~~~~L~~~gLP~~~~~~~~~~~l~~  315 (360)
T COG0337         236 GLRAILNLGHTFGHAIEALTGYGKWLHGEAVAIGMVMAARLSERLGLLDKADAERILNLLKRYGLPTSLPDELDAEKLLE  315 (360)
T ss_pred             hhHHHHhcchHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCccCCCcCCHHHHHH
Confidence            99999999999999999999885699999999999999999999999999999999999999999999986678999999


Q ss_pred             HHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHhh
Q 023154          241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK  285 (286)
Q Consensus       241 ~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~~  285 (286)
                      .|..|||+++|+++||++++ ||++.+.++++++++.++++.++.
T Consensus       316 ~m~~DKK~~~g~i~~vl~~~-iG~~~~~~~v~~~~l~~~l~~~~~  359 (360)
T COG0337         316 AMARDKKVLGGKIRFVLLKE-IGKAEIAEGVDEELLLDALEEVHA  359 (360)
T ss_pred             HHhhcccccCCceEEEeehh-cCceEeecCCCHHHHHHHHHHHhc
Confidence            99999999999999999997 999999878999999999998874

>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C Back     alignment and domain information
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like Back     alignment and domain information
>PLN02834 3-dehydroquinate synthase Back     alignment and domain information
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like Back     alignment and domain information
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics Back     alignment and domain information
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis Back     alignment and domain information
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase Back     alignment and domain information
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed Back     alignment and domain information
>TIGR01357 aroB 3-dehydroquinate synthase Back     alignment and domain information
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS) Back     alignment and domain information
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed Back     alignment and domain information
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins Back     alignment and domain information
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like Back     alignment and domain information
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme Back     alignment and domain information
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) Back     alignment and domain information
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner Back     alignment and domain information
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion] Back     alignment and domain information
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion] Back     alignment and domain information
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) Back     alignment and domain information
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD) Back     alignment and domain information
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like Back     alignment and domain information
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism Back     alignment and domain information
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes Back     alignment and domain information
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor Back     alignment and domain information
>PRK09423 gldA glycerol dehydrogenase; Provisional Back     alignment and domain information
>PRK09860 putative alcohol dehydrogenase; Provisional Back     alignment and domain information
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like Back     alignment and domain information
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation Back     alignment and domain information
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08550 GlyDH-like Glycerol_dehydrogenase-like Back     alignment and domain information
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria Back     alignment and domain information
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway Back     alignment and domain information
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria Back     alignment and domain information
>TIGR02638 lactal_redase lactaldehyde reductase Back     alignment and domain information
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional Back     alignment and domain information
>PRK15454 ethanol dehydrogenase EutG; Provisional Back     alignment and domain information
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate Back     alignment and domain information
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase Back     alignment and domain information
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism Back     alignment and domain information
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process Back     alignment and domain information
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase Back     alignment and domain information
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>PRK10586 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK15138 aldehyde reductase; Provisional Back     alignment and domain information
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD) Back     alignment and domain information
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like Back     alignment and domain information
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional Back     alignment and domain information
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1 Back     alignment and domain information
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C Back     alignment and domain information
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK03202 6-phosphofructokinase; Provisional Back     alignment and domain information
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate Back     alignment and domain information
>TIGR02482 PFKA_ATP 6-phosphofructokinase Back     alignment and domain information
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes [] Back     alignment and domain information
>TIGR02483 PFK_mixed phosphofructokinase Back     alignment and domain information
>PRK14071 6-phosphofructokinase; Provisional Back     alignment and domain information
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein Back     alignment and domain information
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated Back     alignment and domain information
>PRK14072 6-phosphofructokinase; Provisional Back     alignment and domain information
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional Back     alignment and domain information
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase Back     alignment and domain information
>PLN02884 6-phosphofructokinase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
3okf_A390 2.5 Angstrom Resolution Crystal Structure Of 3-Dehy 2e-76
3clh_A343 Crystal Structure Of 3-Dehydroquinate Synthase (Dhq 5e-46
3qbd_A368 3-Dehydroquinate Synthase (Arob) From Mycobacterium 4e-45
1dqs_A393 Crystal Structure Of Dehydroquinate Synthase (Dhqs) 1e-41
1xag_A354 Crystal Structure Of Staphlyococcus Aureus 3-Dehydr 7e-38
1ujn_A348 Crystal Structure Of Dehydroquinate Synthase From T 1e-27
2d2x_A368 Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthas 6e-26
3ce9_A354 Crystal Structure Of Glycerol Dehydrogenase (Np_348 6e-04
>pdb|3OKF|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of 3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/248 (55%), Positives = 167/248 (67%)
Query: 1   MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDS 60
           ++T   V    +E    R    +ALGGGVIGD+ G+AAA Y RGV FIQIPTT+++QVDS
Sbjct: 106 LETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDS 165
Query: 61  SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF 120
           SVGGKT +NH LGKN+IGAFYQP+ V++DTD L TLP RE A+G+AEVIKYG+I D+ FF
Sbjct: 166 SVGGKTAVNHPLGKNMIGAFYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFF 225
Query: 121 EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGF 180
           +W E  M  L A D +A  YAI R C+ KAEVV+ DEKESG+RA LNLGHTFGHAIE   
Sbjct: 226 DWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKESGIRALLNLGHTFGHAIEAHM 285
Query: 181 GYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240
           GYG WLHGE            +   G ID S  +R+  IL++A LP   P+ MT   F  
Sbjct: 286 GYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFMQ 345
Query: 241 IMAVDKKV 248
            M  DKKV
Sbjct: 346 HMMRDKKV 353
>pdb|3CLH|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs)from Helicobacter Pylori Length = 343 Back     alignment and structure
>pdb|3QBD|A Chain A, 3-Dehydroquinate Synthase (Arob) From Mycobacterium Tuberculosis In Complex With Nad Length = 368 Back     alignment and structure
>pdb|1DQS|A Chain A, Crystal Structure Of Dehydroquinate Synthase (Dhqs) Complexed With Carbaphosphonate, Nad+ And Zn2+ Length = 393 Back     alignment and structure
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus 3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+, Nad+ And Carbaphosphonate Length = 354 Back     alignment and structure
>pdb|1UJN|A Chain A, Crystal Structure Of Dehydroquinate Synthase From Thermus Thermophilus Hb8 Length = 348 Back     alignment and structure
>pdb|2D2X|A Chain A, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase Length = 368 Back     alignment and structure
>pdb|3CE9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1) From Clostridium Acetobutylicum At 2.37 A Resolution Length = 354 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
3okf_A390 3-dehydroquinate synthase; structural genomics, ce 1e-178
3clh_A343 3-dehydroquinate synthase; shikimate pathway, arom 1e-168
3qbe_A368 3-dehydroquinate synthase; shikimate pathway, myco 1e-167
2gru_A368 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2 1e-167
1xah_A354 Sadhqs, 3-dehydroquinate synthase; shikimate pathw 1e-164
1sg6_A393 Pentafunctional AROM polypeptide; shikimate pathwa 1e-161
1ujn_A348 Dehydroquinate synthase; riken structu genomics/pr 1e-158
3ce9_A354 Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin 4e-28
1ta9_A450 Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa 1e-20
1jq5_A370 Glycerol dehydrogenase; oxidoreductase, NAD, glyce 2e-10
3uhj_A387 Probable glycerol dehydrogenase; structural genomi 3e-10
1kq3_A376 Glycerol dehydrogenase; structural genomics, joint 7e-08
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor} Length = 390 Back     alignment and structure
 Score =  495 bits (1277), Expect = e-178
 Identities = 152/286 (53%), Positives = 189/286 (66%), Gaps = 2/286 (0%)

Query: 1   MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDS 60
           ++T   V    +E    R    +ALGGGVIGD+ G+AAA Y RGV FIQIPTT+++QVDS
Sbjct: 106 LETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDS 165

Query: 61  SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF 120
           SVGGKT +NH LGKN+IGAFYQP+ V++DTD L TLP RE A+G+AEVIKYG+I D+ FF
Sbjct: 166 SVGGKTAVNHPLGKNMIGAFYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFF 225

Query: 121 EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGF 180
           +W E  M  L A D +A  YAI R C+ KAEVV+ DEKESG+RA LNLGHTFGHAIE   
Sbjct: 226 DWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKESGIRALLNLGHTFGHAIEAHM 285

Query: 181 GYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240
           GYG WLHGEAV+AG VMA   +   G ID S  +R+  IL++A LP   P+ MT   F  
Sbjct: 286 GYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFMQ 345

Query: 241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS 286
            M  DKKV  G LRL+L    +G            +   +  +C++
Sbjct: 346 HMMRDKKVLAGELRLVLPTS-IGTSAVVKGVPEAVIAQAI-EYCRT 389
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori} Length = 343 Back     alignment and structure
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A Length = 368 Back     alignment and structure
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* Length = 368 Back     alignment and structure
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* Length = 354 Back     alignment and structure
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A* Length = 393 Back     alignment and structure
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1 Length = 348 Back     alignment and structure
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Length = 354 Back     alignment and structure
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe} Length = 450 Back     alignment and structure
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Length = 370 Back     alignment and structure
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} Length = 387 Back     alignment and structure
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2 Length = 376 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
3okf_A390 3-dehydroquinate synthase; structural genomics, ce 100.0
3qbe_A368 3-dehydroquinate synthase; shikimate pathway, myco 100.0
3clh_A343 3-dehydroquinate synthase; shikimate pathway, arom 100.0
2gru_A368 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2 100.0
1ujn_A348 Dehydroquinate synthase; riken structu genomics/pr 100.0
1sg6_A393 Pentafunctional AROM polypeptide; shikimate pathwa 100.0
1xah_A354 Sadhqs, 3-dehydroquinate synthase; shikimate pathw 100.0
3ce9_A354 Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin 100.0
1jq5_A370 Glycerol dehydrogenase; oxidoreductase, NAD, glyce 100.0
3bfj_A387 1,3-propanediol oxidoreductase; opportunistic path 100.0
1rrm_A386 Lactaldehyde reductase; structural genomics, dehyd 100.0
1vlj_A407 NADH-dependent butanol dehydrogenase; TM0820, stru 100.0
1oj7_A408 Hypothetical oxidoreductase YQHD; structural genom 100.0
1kq3_A376 Glycerol dehydrogenase; structural genomics, joint 100.0
1o2d_A371 Alcohol dehydrogenase, iron-containing; TM0920, st 100.0
1ta9_A450 Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosa 100.0
3ox4_A383 Alcohol dehydrogenase 2; iron, NAD, oxidoreductase 100.0
3jzd_A358 Iron-containing alcohol dehydrogenase; YP_298327.1 100.0
3uhj_A387 Probable glycerol dehydrogenase; structural genomi 100.0
3hl0_A353 Maleylacetate reductase; structur genomics, PSI-2, 100.0
3iv7_A364 Alcohol dehydrogenase IV; NP_602249.1, iron-contai 100.0
3rf7_A375 Iron-containing alcohol dehydrogenase; structural 100.0
3lp6_A174 Phosphoribosylaminoimidazole carboxylase catalyti; 88.92
1pfk_A320 Phosphofructokinase; transferase(phosphotransferas 88.62
1zxx_A319 6-phosphofructokinase; allosteric regulation, lact 87.34
4a3s_A319 6-phosphofructokinase; transferase, glycolysis, de 86.94
3oow_A166 Phosphoribosylaminoimidazole carboxylase,catalyic; 86.63
3hno_A419 Pyrophosphate-dependent phosphofructokinase; struc 84.71
2f48_A 555 Diphosphate--fructose-6-phosphate 1-phosphotransf; 82.88
2i2c_A272 Probable inorganic polyphosphate/ATP-NAD kinase 1; 81.81
3o8l_A762 6-phosphofructokinase, muscle type; transferase; H 80.68
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
Probab=100.00  E-value=2.2e-72  Score=525.83  Aligned_cols=282  Identities=54%  Similarity=0.862  Sum_probs=269.4

Q ss_pred             hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023154            2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY   81 (286)
Q Consensus         2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~   81 (286)
                      +++.++++.+++++++|.|+|||+|||+++|+|||+|++|+||+||++||||+++|+||++|+|++||.+.+||.+|.|+
T Consensus       107 ~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rgip~I~IPTTlla~vDssvggkt~I~~~~~Kn~ig~f~  186 (390)
T 3okf_A          107 ETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFY  186 (390)
T ss_dssp             HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHHTSSSCEEEEEETTEEEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCCCCEEEeCCCCccccccCcCCeEEEEcCCCceEEeecc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhhh
Q 023154           82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESG  161 (286)
Q Consensus        82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g  161 (286)
                      +|.+||+||+++.|+|++++++|++|++||+++.||++|+|++++.+.+.+.+.+.+.+++.++|..|.++|.+|++|.|
T Consensus       187 ~P~~ViiD~~~l~tlP~r~~~aG~~D~lkha~i~D~~~~~~l~~~~~~l~~~~~~~l~~~i~~s~~~K~~vV~~D~~E~g  266 (390)
T 3okf_A          187 QPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFFDWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKESG  266 (390)
T ss_dssp             CCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred             CCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHHHHHHhcCCchhhc
Confidence            99999999999999999999999999999999999999999999887888888889999999999999999999999999


Q ss_pred             hHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Q 023154          162 LRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSI  241 (286)
Q Consensus       162 ~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~~  241 (286)
                      +|++||||||||||||..++|..++|||+||+||.++++++.++|++++++.+++.++|+++|+|+++++.+++++++++
T Consensus       267 ~R~~Ln~GHT~gHAiE~~~~~~~~~HGeaVaiGm~~~a~ls~~~g~~~~~~~~ri~~~l~~~glp~~~~~~~~~~~~~~~  346 (390)
T 3okf_A          267 IRALLNLGHTFGHAIEAHMGYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFMQH  346 (390)
T ss_dssp             GGGGGGTTHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCCSCCTTCCHHHHHHH
T ss_pred             ccchhccchHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999877766899999999999999999999999999999999999999999998765789999999


Q ss_pred             HHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHh
Q 023154          242 MAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC  284 (286)
Q Consensus       242 l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~  284 (286)
                      |.+|||+++|+++|+||++ ||++++..+++++++.+++++++
T Consensus       347 m~~DKK~~~g~i~~vL~~~-iG~~~~~~~v~~~~l~~~l~~~~  388 (390)
T 3okf_A          347 MMRDKKVLAGELRLVLPTS-IGTSAVVKGVPEAVIAQAIEYCR  388 (390)
T ss_dssp             HTGGGTCCTTCCEEEEEEE-TTEEEEEECCCHHHHHHHHHHTT
T ss_pred             HHhhhcccCCEEEEEEECC-CCcEEEECCCCHHHHHHHHHHhc
Confidence            9999999999999999997 99999988899999999998764
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A Back     alignment and structure
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori} Back     alignment and structure
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* Back     alignment and structure
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1 Back     alignment and structure
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A* Back     alignment and structure
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* Back     alignment and structure
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Back     alignment and structure
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Back     alignment and structure
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Back     alignment and structure
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2 Back     alignment and structure
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2 Back     alignment and structure
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2 Back     alignment and structure
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Back     alignment and structure
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe} Back     alignment and structure
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* Back     alignment and structure
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha} Back     alignment and structure
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} Back     alignment and structure
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} Back     alignment and structure
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} Back     alignment and structure
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans} Back     alignment and structure
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0 Back     alignment and structure
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Back     alignment and structure
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A* Back     alignment and structure
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A* Back     alignment and structure
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A Back     alignment and structure
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A* Back     alignment and structure
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A* Back     alignment and structure
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d1sg6a_389 e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Asper 1e-48
d1ujna_347 e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Therm 2e-37
d1kq3a_364 e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga m 7e-12
>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} Length = 389 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Dehydroquinate synthase, DHQS
domain: Dehydroquinate synthase, DHQS
species: Aspergillus nidulans [TaxId: 162425]

 Score =  164 bits (414), Expect = 1e-48
 Identities = 111/298 (37%), Positives = 151/298 (50%), Gaps = 28/298 (9%)

Query: 1   MDTLMKVFDKAIESR--LDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQV 58
             T   + D  +       R    +ALGGGVIGD+ G+ A++Y+RGV ++Q+PTT++A V
Sbjct: 83  RQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMV 142

Query: 59  DSSVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAE 118
           DSS+GGKT I+  LGKNLIGA +QP  + +D + L TLP RE  +G+AEVIK   I   E
Sbjct: 143 DSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEE 202

Query: 119 FFEWQEQNMHKLMA--------------RDPRAFAYAIKRSCENKAEVVSLDEKESGLRA 164
            F   E+N   ++                        I  S  +KA VVS DE+E GLR 
Sbjct: 203 EFTALEENAETILKAVRREVTPGEHRFEGTEEILKARILASARHKAYVVSADEREGGLRN 262

Query: 165 TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAK 224
            LN GH+ GHAIE      Q LHGE VA GMV   +++  LG +    V R+   L    
Sbjct: 263 LLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYG 321

Query: 225 LPTAPPDT----------MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYD 272
           LPT+  D            +V+     MA+DKK      +++LL   +G    T    
Sbjct: 322 LPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKKIVLLSA-IGTPYETRASV 378
>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]} Length = 347 Back     information, alignment and structure
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 364 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d1ujna_347 Dehydroquinate synthase, DHQS {Thermus thermophilu 100.0
d1sg6a_389 Dehydroquinate synthase, DHQS {Aspergillus nidulan 100.0
d1jq5a_366 Glycerol dehydrogenase {Bacillus stearothermophilu 100.0
d1kq3a_364 Glycerol dehydrogenase {Thermotoga maritima [TaxId 100.0
d1o2da_359 Alcohol dehydrogenase TM0920 {Thermotoga maritima 99.97
d1oj7a_390 Hypothetical oxidoreductase yqhD {Escherichia coli 99.97
d1vlja_398 NADH-dependent butanol dehydrogenase A (TM0820) {T 99.96
d1rrma_385 Lactaldehyde reductase FucO {Escherichia coli [Tax 99.96
d4pfka_319 ATP-dependent phosphofructokinase {Bacillus stearo 87.15
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 86.57
d1pfka_320 ATP-dependent phosphofructokinase {Escherichia col 81.94
d2f48a1550 Pyrophosphate-dependent phosphofructokinase {Lyme 81.6
>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Dehydroquinate synthase, DHQS
domain: Dehydroquinate synthase, DHQS
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.9e-64  Score=463.93  Aligned_cols=273  Identities=35%  Similarity=0.490  Sum_probs=242.2

Q ss_pred             ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023154            1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF   80 (286)
Q Consensus         1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~   80 (286)
                      ++++.++++.+.+.+++|.|+|||+|||+++|+|||+|++|+||+||++||||+++|+||++|+|+++|+..+||.+|+|
T Consensus        67 l~~~~~i~~~l~~~~~~r~~~iiaiGGG~v~D~agf~A~~y~rgi~~i~vPTtlla~vDs~~g~k~~in~~~~kn~~g~f  146 (347)
T d1ujna_          67 LEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATYLRGVAYLAFPTTTLAIVDASVGGKTGINLPEGKNLVGAF  146 (347)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhhcccccceeEeechhhhhHHHHHhhhhcCCcceeeccchhhhcccccccccccccccccccccccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023154           81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES  160 (286)
Q Consensus        81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~  160 (286)
                      ++|..|++||+++.|+|+|++++|++|++||+++.|+++|.+++...     ...+.+.+++.+++..|..++..|++|.
T Consensus       147 ~~P~~v~~D~~~l~tlp~r~~~sG~~Eiik~~~i~~~~~~~~~~~~~-----~~~~~~~~~i~~s~~~k~~~v~~d~~E~  221 (347)
T d1ujna_         147 HFPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEALLKVEDLT-----PQSPRLEAFLARAVAVKVRVTEEDPLEK  221 (347)
T ss_dssp             CCCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHHTCGGGGCCTTCC-----TTCTTHHHHHHHHHHHHHHHHHHCTTSS
T ss_pred             cCCCeeeccHHHHHhhhHHHHHHHHHHHHHHhhccCHHHHHhhhhhc-----ccchHHHHHHHHHHHHhhhhhhhchhhc
Confidence            99999999999999999999999999999999999988887765432     1223456789999999999999999999


Q ss_pred             hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 023154          161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS  240 (286)
Q Consensus       161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~  240 (286)
                      |.|+++|||||+|||+|+.+++ .++||++||+||.++++++.++|..+  ..+++..+++.+++|...  .++.+++++
T Consensus       222 g~R~~ln~GHt~gHAlE~~~~~-~l~HGeaVaiGm~~~~~ls~~lg~~~--~~~~~~~l~~~~~~~~~~--~~~~~~l~~  296 (347)
T d1ujna_         222 GKRRLLNLGHTLGHALEAQTRH-ALPHGMAVAYGLLYAALLGRALGGED--LLPPVRRLLLWLSPPPLP--PLAFEDLLP  296 (347)
T ss_dssp             SGGGGGGTTHHHHHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHCCCCCC--CCCHHHHGG
T ss_pred             cchhhccccchhHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhCCch--hHHHHHHHHHhcCCCCCC--CCCHHHHHH
Confidence            9999999999999999998776 69999999999999999999998643  467888999999988754  368899999


Q ss_pred             HHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHhh
Q 023154          241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK  285 (286)
Q Consensus       241 ~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~~  285 (286)
                      .|..|||+++|+++|+||++ +|++.+. +|+++++++++++|++
T Consensus       297 ~m~~DKK~~~~~i~~vL~~~-iG~~~i~-~v~~~~l~~~l~~~~e  339 (347)
T d1ujna_         297 YLLRDKKKVSESLHWVVPLA-PGRLVVR-PLPEGLLREAFAAWRE  339 (347)
T ss_dssp             GC---------CCCEEEEEE-TTEEEEE-CCCHHHHHHHHHHHHH
T ss_pred             HHHhCcCcCCCceEEEEECC-CCCeEEe-cCCHHHHHHHHHHHHH
Confidence            99999999999999999997 9999874 9999999999999976
>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent phosphofructokinase {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure