Citrus Sinensis ID: 023176

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccccccccEccccccccccEEEEEEccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccHHHccccccccccccccccHHHHccccEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEHHHHHccccHHHcccccccccccHHHHHHHHHHHHcccccccccccEEcccccccccccEEEccEEEEccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSKRVLCKFfahgaclkgehcefshdwkdppnnictyyqkgfcsygsrcryehvkpsrsesaasssssvshpsratssgitkvpgvmpelsalsrpflppnktawnpesvcndslendevdeprnlkpadrsicsfaaagncprgekcphihgdtcptcgkqclhpfrpeereEHMKSCEKKQKHLEALRRSQEIECSVcldrvlskptaaerkfgllsecdhpfciscirnwrsssptsgmdvntalracpicrklsyfvipsviwyytpeeKQEIIDSYKSKLK
Flexible Loop (DISEMBL)
MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSrsesaasssssvshpsratssgitkvpgVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNwrsssptsgMDVNTALRACPICRKLSYFVIPSVIWyytpeekqeiidsyksklk
Low Complexity Region (SEG)
MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPsrsesaasssssvshpsratssGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK
Disordered region (IsUnstruct)
****VLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYE********************************************************************************ICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLH****************************EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS*TSGMDVNTALRACPICRKLSYFVIPSVIWYYTP***************
Disordered Region (DISOPRED)
*SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEERE*********************IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN****************RACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKL*
Disordered Region (DISEMBL)
MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRY****************************ITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRP*******************LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK
Disordered Region (DISPRO)
*SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHV***********************************************************************LKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
E0X9N4	350	Zinc finger CCCH domain-c	yes	no	0.989	0.808	0.686	1e-109
Q5ZA07	368	E3 ubiquitin-protein liga	yes	no	0.996	0.774	0.620	1e-103
Q6IDS6	323	E3 ubiquitin-protein liga	yes	no	0.905	0.801	0.608	2e-99
Q9H000	416	Probable E3 ubiquitin-pro	yes	no	0.968	0.665	0.351	3e-50
Q9UHC7	482	E3 ubiquitin-protein liga	no	no	0.979	0.580	0.343	8e-50
Q9ERV1	416	Probable E3 ubiquitin-pro	yes	no	0.968	0.665	0.351	2e-49
Q8JFF3	435	Probable E3 ubiquitin-pro	N/A	no	0.968	0.636	0.372	2e-49
Q9TT91	478	E3 ubiquitin-protein liga	N/A	no	0.979	0.585	0.343	6e-49
Q9QXP6	481	E3 ubiquitin-protein liga	no	no	0.979	0.582	0.334	2e-48
Q4VBT5	439	Probable E3 ubiquitin-pro	yes	no	0.979	0.637	0.352	2e-47

>sp|E0X9N4|C3H69_ARATH Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis thaliana GN=At3g63550 PE=3 SV=1

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/290 (68%), Positives = 231/290 (79%), Gaps = 7/290 (2%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MSKR+LCKFFAHGACLKGEHCEFSHDWKDP NNICTYYQKG CSYGSRCRYEHVK SR  
Sbjct: 1   MSKRILCKFFAHGACLKGEHCEFSHDWKDPTNNICTYYQKGICSYGSRCRYEHVKASRPH 60

Query: 61  SAASSSSSVSHPSRATSSGITK---VPGVMP-ELSALSRPFLPPNKTAWNPESVCNDSLE 116
            +ASSSS+V  PS A++S       +PGV   +LS +    L P    WN +S+  DS++
Sbjct: 61  PSASSSSAVPRPSPASASNTLACAFLPGVAERDLSPVPSSSLKPT---WNLDSLHQDSVD 117

Query: 117 NDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHM 176
             +   P  +KP +  ICSFAAAG+CPRG +CPHIHG  CPTCGK CLHPFRP+EREEH 
Sbjct: 118 EVKTSNPGTVKPEELPICSFAAAGDCPRGNECPHIHGTICPTCGKCCLHPFRPDEREEHK 177

Query: 177 KSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSS 236
           K CEKK K LEAL+ SQEIEC VCL+RVLSK T AERKFGLL+ECDH FCI+CIRNWRSS
Sbjct: 178 KVCEKKHKQLEALKLSQEIECCVCLERVLSKATPAERKFGLLTECDHAFCIACIRNWRSS 237

Query: 237 SPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
           SP++GMDVN+ LRACPICRKLSYFV+PSVIW+  PEEK+EI+D+Y+ KL+
Sbjct: 238 SPSTGMDVNSTLRACPICRKLSYFVVPSVIWFSAPEEKKEIMDNYREKLR 287

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZA07|C3H41_ORYSJ E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica GN=MKRN PE=2 SV=1

 Score =  376 bits (965), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/303 (62%), Positives = 218/303 (71%), Gaps = 18/303 (5%)

Query: 2   SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSES 61
           +KRVLCKFF HGACLKGE+CEFSHDW D PNN+CT+YQKG CSYGSRCRY+HVK SR+ +
Sbjct: 3   TKRVLCKFFMHGACLKGEYCEFSHDWNDQPNNVCTFYQKGSCSYGSRCRYDHVKVSRNPT 62

Query: 62  AAS--------------SSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPN-KTAWN 106
            A                  S   P        +  P     +  L+     P  +  + 
Sbjct: 63  VAPPPSSSTTTRASSSLQPLSFGRPHHVGYQADSSNPRQQISMDVLAHSGSKPVWRNDFQ 122

Query: 107 PESVCNDSLE---NDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQC 163
            ESV  D ++   +  V     L PAD  ICSFAA GNCP GE+CP +HGD C TCGK C
Sbjct: 123 HESVLEDGIDWSISPTVQNQTTLSPADLPICSFAAGGNCPYGEECPQMHGDLCTTCGKMC 182

Query: 164 LHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDH 223
           LHP+RP+EREEH K CEK  K LE+L+RSQEIECSVCLDRVLSKPTAAERKFGLLSECDH
Sbjct: 183 LHPYRPDEREEHTKLCEKNHKRLESLKRSQEIECSVCLDRVLSKPTAAERKFGLLSECDH 242

Query: 224 PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKS 283
           PFCISCIRNWR++SPTSGMDVN+ALRACPICRKLSY+VIPSV+WY++ EEK EIID+YK+
Sbjct: 243 PFCISCIRNWRNNSPTSGMDVNSALRACPICRKLSYYVIPSVLWYFSKEEKLEIIDNYKA 302

Query: 284 KLK 286
           KLK
Sbjct: 303 KLK 305

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6IDS6|C3H35_ARATH E3 ubiquitin-protein ligase makorin OS=Arabidopsis thaliana GN=MKRN PE=2 SV=1

 Score =  362 bits (929), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/286 (60%), Positives = 209/286 (73%), Gaps = 27/286 (9%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MS R+LCKFF HG+CLKGE+CEFSHD KDPPNN+CT+YQK  C YGSRCRY+HV+ + + 
Sbjct: 1   MSDRILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVRAASNL 60

Query: 61  SAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEV 120
             +S S S+      T S   +  G                           D+ + D+ 
Sbjct: 61  PLSSDSESLDRSISTTPSRHLQQQG---------------------------DNNDGDKS 93

Query: 121 DEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCE 180
                + P +  ICSFAAAG+CPRG +CPH+HGD C TCGK+CLHPFRPEEREEH K CE
Sbjct: 94  SNVYCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEEREEHTKECE 153

Query: 181 KKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTS 240
           KKQKH+EAL++SQ+IECSVCLDR+LSK T  ERKFGLL+ECDHPFCI CIRNWRSS+P S
Sbjct: 154 KKQKHIEALKQSQDIECSVCLDRILSKATPGERKFGLLTECDHPFCIQCIRNWRSSAPVS 213

Query: 241 GMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
           GMDVN+ LRACPICRKLSYFV+PSV+WY +PEEK+EIID YK+KL+
Sbjct: 214 GMDVNSTLRACPICRKLSYFVVPSVVWYSSPEEKKEIIDIYKAKLR 259

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens GN=MKRN2 PE=2 SV=2

 Score =  199 bits (505), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 176/327 (53%), Gaps = 50/327 (15%)

Query: 2   SKRVLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           +K++ C++F HG C +G  C FSHD  +  P+ IC YYQKG+C+YG+RCRY+H +PS + 
Sbjct: 3   TKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAA 62

Query: 61  SAASSSSSVS---------HPSRATSSGITKVPGVMP-------------ELSALSRPFL 98
             A  + + S         HP    ++ I K     P              LS ++    
Sbjct: 63  GGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKT 122

Query: 99  PPNKTAWNPESVCNDSLENDEVDEPRNLKPADRS----------------ICSFAAAGNC 142
            P+  + NP S C+D   + E+ +P +   A RS                +C +AAAG C
Sbjct: 123 QPSMVS-NPGS-CSDPQPSPEM-KPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGEC 179

Query: 143 PRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSC----EKKQKHLEALRRSQEIECS 198
             G+ C ++HG+ C  C  Q LHPF PE+R+ H K C    E + +   A + SQ+  CS
Sbjct: 180 RFGDACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCS 239

Query: 199 VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258
           +C++ +L K +A+ER+FG+LS C+H +C+SCIR WR +        N  +++CP CR +S
Sbjct: 240 ICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFE----NPIIKSCPECRVIS 295

Query: 259 YFVIPSVIWYYTPEEKQEIIDSYKSKL 285
            FVIPSV W     +K E+I+++K  +
Sbjct: 296 EFVIPSVYWVEDQNKKNELIEAFKQGM 322

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1 SV=3

 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 172/314 (54%), Gaps = 34/314 (10%)

Query: 2   SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNI-CTYYQKGFCSYGSRCRYEHVKPSRSE 60
           +K+V C++F HG C +G++C +SHD  D P ++ C Y+Q+G+C YG RCRYEH KP + E
Sbjct: 56  TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115

Query: 61  SAASSSSS-------------VSHPSRATSSGITK-------VPGVMPELSALSRPFLPP 100
            A ++  +             +  P    ++G  +         G   E    +  F+P 
Sbjct: 116 EATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPG 175

Query: 101 N----KTAWN-PESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT 155
                +TA +  E+    S+  +E ++ +      + +C +AA G C  GE C ++HGD+
Sbjct: 176 QPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDS 235

Query: 156 CPTCGKQCLHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAA 211
           C  CG Q LHP    +R +H+KSC E  +K +E   A++RS+++ C +C++ V  K   +
Sbjct: 236 CDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPS 295

Query: 212 ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271
           ER+FG+LS C+H +C+ CIR WRS+        +  +++CP CR  S FVIPS  W    
Sbjct: 296 ERRFGILSNCNHTYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEK 351

Query: 272 EEKQEIIDSYKSKL 285
           EEKQ++I  YK  +
Sbjct: 352 EEKQKLILKYKEAM 365

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. These substrates include FILIP1, p53/TP53, CDKN1A and TERT. Keeps cells alive by suppressing p53/TP53 under normal conditions, but stimulates apoptosis by repressing CDKN1A under stress conditions. Acts as a negative regulator of telomerase. Has negative and positive effects on RNA polymerase II-dependent transcription.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ERV1|MKRN2_MOUSE Probable E3 ubiquitin-protein ligase makorin-2 OS=Mus musculus GN=Mkrn2 PE=2 SV=2

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 173/327 (52%), Gaps = 50/327 (15%)

Query: 2   SKRVLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           +K+V C++F HG C +G  C FSHD  +  P+ IC YYQKG+C+YG+RCRY+H KP  + 
Sbjct: 3   TKQVTCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGARCRYDHTKPPAAA 62

Query: 61  S---------AASSSSSVSHPSRATSSGITKVPGVMP-------------ELSALSRPFL 98
                     + SS     HPS   ++ + +     P              L+ L+    
Sbjct: 63  GGAVGPAPNPSPSSGLHSPHPSPDIATSVMRTHSNEPGKREKKTLVLRDRNLTGLAEDKT 122

Query: 99  PPNKTAWNPESVCNDSLENDEVDEPRNLKPADRS----------------ICSFAAAGNC 142
           PP+K   N    C+D   + E+ +P +   A R+                +C +AAAG C
Sbjct: 123 PPSKV--NNPGGCSDPQTSPEM-KPHSYLDAIRTGLDDLEASSSYSNEPQLCPYAAAGEC 179

Query: 143 PRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSC----EKKQKHLEALRRSQEIECS 198
             G+ C ++HGD C  C  Q LHPF PE+R+ H K C    E + +   A + SQ+  CS
Sbjct: 180 RFGDACVYLHGDMCEICRLQVLHPFDPEQRKAHEKMCMSTFEHEMEKAFAFQASQDKVCS 239

Query: 199 VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258
           +C++ +L K +A+ER+FG+LS C H +C+SCIR WR +        N  +++CP CR +S
Sbjct: 240 ICMEVILEKASASERRFGILSNCSHTYCLSCIRQWRCAKQFE----NPIIKSCPECRVIS 295

Query: 259 YFVIPSVIWYYTPEEKQEIIDSYKSKL 285
            FVIPSV W     +K E+I+++K  +
Sbjct: 296 EFVIPSVYWVEDQNKKNELIEAFKQGM 322

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola quinqueradiata GN=mkrn1 PE=2 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 166/301 (55%), Gaps = 24/301 (7%)

Query: 2   SKRVLCKFFAHGACLKGEHCEFSHDWKD--PPNNICTYYQKGFCSYGSRCRYEHVKPSRS 59
           +K V C++F HG C +G++C +SHD  +  P   IC ++QKG C +G RCR+EH KP+++
Sbjct: 19  TKHVTCRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGDRCRFEHCKPAKN 78

Query: 60  ESAASS------SSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCND 113
           E   +       S+S++ PS    SG T VPG    ++A    F+P        E    +
Sbjct: 79  EELPAPQMLPLPSASLAGPSDPEPSGPTPVPGAQDWVNAAE--FVPGQPYCGRAEQAKVE 136

Query: 114 SL-----ENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFR 168
           S      E D    P N K   + +C +AA G C  G  C ++HGD C  CG Q LHP  
Sbjct: 137 SSVPLIEEFDSYPAPDN-KQLRKQLCPYAAVGECRYGINCAYLHGDVCYMCGLQVLHPTD 195

Query: 169 PEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP 224
             +R EH K+C E  +K +E   A++RS+++ C VC++ V  K   +ER+FG+LS C H 
Sbjct: 196 NNQRSEHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCSHC 255

Query: 225 FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSK 284
           +C+ CIR WRS+        +  +++CP CR  S FVIPS  W    ++KQ++I  YK  
Sbjct: 256 YCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEDKDDKQKLIQKYKDG 311

Query: 285 L 285
           +
Sbjct: 312 M 312

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.

Seriola quinqueradiata (taxid: 8161)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1 PE=2 SV=1

 Score =  194 bits (493), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 166/314 (52%), Gaps = 34/314 (10%)

Query: 2   SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNN-ICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           +K+V C++F HG C KG +C +SHD     +  +C YYQ+G C+YG RCRYEH KP + E
Sbjct: 52  TKQVTCRYFMHGVCKKGNNCRYSHDLSTSQSAMVCRYYQRGCCAYGDRCRYEHTKPLKRE 111

Query: 61  S-------------AASSSSSVSHPSRATSSGITK-------VPGVMPELSALSRPFLPP 100
                         A+SS  ++  P    S+G  +         G   E    +  F+P 
Sbjct: 112 EVTAANLAAKSDLPASSSLPALVEPLAEVSTGEAESVNSNFAAAGAGGEDWVNAIEFVPG 171

Query: 101 NKTAWNPESVCNDS-----LENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT 155
                     C ++     +  +E+++ +      + +C +AA G C  GE C ++HGD 
Sbjct: 172 QPYCGRAAPSCTEAPLQGMVIEEELEKQQTNVEMKKQLCPYAAVGECRYGENCVYLHGDA 231

Query: 156 CPTCGKQCLHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAA 211
           C  CG Q LHP    +R +H+KSC E  +K +E   A++RS+++ C +C++ V  K   +
Sbjct: 232 CDMCGLQVLHPVDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPS 291

Query: 212 ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271
           ER+FG+LS C+H +C+ CIR WRS+        +  +++CP CR  S FVIPS  W    
Sbjct: 292 ERRFGILSNCNHTYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEK 347

Query: 272 EEKQEIIDSYKSKL 285
           EEKQ++I  YK  +
Sbjct: 348 EEKQKLIQKYKEAM 361

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. These substrates include FILIP1, p53/TP53, CDKN1A and TERT. Keeps cells alive by suppressing p53/TP53 under normal conditions, but stimulates apoptosis by repressing CDKN1A under stress conditions. Acts as a negative regulator of telomerase. Has negative and positive effects on RNA polymerase II-dependent transcription.

Macropus eugenii (taxid: 9315)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2 SV=1

 Score =  192 bits (488), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 162/314 (51%), Gaps = 34/314 (10%)

Query: 2   SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNI-CTYYQKGFCSYGSRCRYEHVKPSRSE 60
           +K+V C++F HG C +G++C +SHD  D P  + C Y+Q+G+C YG RCRYEH KP + E
Sbjct: 56  TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYGVVCKYFQRGYCVYGDRCRYEHSKPLKQE 115

Query: 61  SAASSSSSV--------------SHPSRATSSGITKVPGVMPELSALSRP------FLPP 100
              ++  S                  +   S          P + A S        F+P 
Sbjct: 116 EVTATDLSAKPSLAASSSLSSGVGSLAEMNSGEAESRNPSFPTVGAGSEDWVNAIEFVPG 175

Query: 101 NKTAWNPESVCND-----SLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT 155
                     C +     S+  +E ++        + +C +AA G C  GE C ++HGD+
Sbjct: 176 QPYCGRTAPSCTEVPPQGSVTKEESEKEPTTVETKKQLCPYAAVGECRYGENCVYLHGDS 235

Query: 156 CPTCGKQCLHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAA 211
           C  CG Q LHP    +R +H+KSC E  +K +E   A++R++++ C +C++ V  K   +
Sbjct: 236 CDMCGLQVLHPVDAAQRSQHIKSCIEAHEKDMELSFAVQRTKDMVCGICMEVVYEKANPS 295

Query: 212 ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271
           ER+FG+LS C+H +C+ CIR WRS+        +  +++CP CR  S FVIPS  W    
Sbjct: 296 ERRFGILSNCNHTYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEK 351

Query: 272 EEKQEIIDSYKSKL 285
           EEKQ++I  YK  +
Sbjct: 352 EEKQKLIQKYKEAM 365

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. These substrates include FILIP1, p53/TP53, CDKN1A and TERT. Keeps cells alive by suppressing p53/TP53 under normal conditions, but stimulates apoptosis by repressing CDKN1A under stress conditions. Acts as a negative regulator of telomerase (By similarity). Has negative and positive effects on RNA polymerase II-dependent transcription.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio GN=mkrn1 PE=2 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/306 (35%), Positives = 165/306 (53%), Gaps = 26/306 (8%)

Query: 2   SKRVLCKFFAHGACLKGEHCEFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           +K V C++F HG C +GE+C +SHD        IC ++QKG C++G RCRYEH KPS+ +
Sbjct: 19  TKHVTCRYFMHGLCKEGENCRYSHDLSSCKQTMICKFFQKGCCAFGDRCRYEHTKPSKQD 78

Query: 61  SAASSSSSV---SHPSRATSSGITKVPGVM------PELSAL-----SRPFLPPNKTAWN 106
              SS  S+   + P   T   ++  PG        P+ S       +  F+P       
Sbjct: 79  EVPSSKPSMPLTAAPLAGTPEPVSDGPGGTTGAQEKPQGSGAVDWVNAAEFVPGQPYCGR 138

Query: 107 PESVCNDS---LENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQC 163
            + V  +    L  +E ++ +  K   + +C +AA G C  G  C ++HGD C  CG Q 
Sbjct: 139 ADPVLCEGPGPLIEEEYEKEQANKEMKKQLCPYAAVGECRYGLNCAYLHGDVCDMCGLQV 198

Query: 164 LHPFRPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLS 219
           LHP    +R +H+++C E  +K +E   A++RS+++ C VC++ V  K   +ER+FG+LS
Sbjct: 199 LHPSDTSQRSQHIRACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKTNPSERRFGILS 258

Query: 220 ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIID 279
            C H +C+ CIR WRS+        +  +++CP CR  S FVIPS  W    EEKQ++I 
Sbjct: 259 NCCHCYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEDKEEKQQLIQ 314

Query: 280 SYKSKL 285
            YK  +
Sbjct: 315 KYKDGM 320

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
255571640	361	Makorin-1, putative [Ricinus communis] g	0.996	0.789	0.773	1e-129
224106063	391	predicted protein [Populus trichocarpa]	1.0	0.731	0.753	1e-127
225450157	361	PREDICTED: E3 ubiquitin-protein ligase m	0.996	0.789	0.744	1e-125
357457691	420	E3 ubiquitin-protein ligase makorin [Med	0.986	0.671	0.707	1e-122
224055241	320	predicted protein [Populus trichocarpa]	0.895	0.8	0.741	1e-117
356557144	363	PREDICTED: E3 ubiquitin-protein ligase m	0.982	0.774	0.710	1e-117
356525651	363	PREDICTED: E3 ubiquitin-protein ligase m	0.986	0.776	0.696	1e-116
449489044	357	PREDICTED: zinc finger CCCH domain-conta	1.0	0.801	0.675	1e-108
449436285	398	PREDICTED: zinc finger CCCH domain-conta	1.0	0.718	0.675	1e-108
374110480	350	RecName: Full=Zinc finger CCCH domain-co	0.989	0.808	0.686	1e-107

>gi|255571640|ref|XP_002526765.1| Makorin-1, putative [Ricinus communis] gi|223533892|gb|EEF35619.1| Makorin-1, putative [Ricinus communis]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/296 (77%), Positives = 249/296 (84%), Gaps = 11/296 (3%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKG CSYGSRCRYEHVKP RS+
Sbjct: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGICSYGSRCRYEHVKPLRSD 60

Query: 61  SA-----------ASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPES 109
           SA           AS+S  + H  R  SS +T V     ELSA   PF PP+  AWN +S
Sbjct: 61  SASSSSTVSYQSLASTSIPLVHSVRTGSSRLTSVHNASGELSASRNPFFPPSNPAWNLDS 120

Query: 110 VCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRP 169
             N+ LEN E+ EPRN+KP D  +CSFAAAGNCPRG+KCPH+HGD CPTCGK CLHPFRP
Sbjct: 121 GPNNLLENGEIIEPRNVKPEDHPLCSFAAAGNCPRGDKCPHVHGDLCPTCGKNCLHPFRP 180

Query: 170 EEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISC 229
           EEREEH+++CEKKQKHLEAL+ SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISC
Sbjct: 181 EEREEHLRTCEKKQKHLEALKHSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISC 240

Query: 230 IRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKL 285
           IRNWRSSSPTSGMDVNTALRACPICRKLSYFV+PSVIWY + EEKQEI+DSYK+KL
Sbjct: 241 IRNWRSSSPTSGMDVNTALRACPICRKLSYFVVPSVIWYSSKEEKQEIVDSYKAKL 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106063|ref|XP_002314030.1| predicted protein [Populus trichocarpa] gi|222850438|gb|EEE87985.1| predicted protein [Populus trichocarpa]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/296 (75%), Positives = 251/296 (84%), Gaps = 10/296 (3%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MSKR+LCKFFAHGACLKGEHCEFSHDWKDPPNNICT+YQKG C YGSRCRY+HVKPSR E
Sbjct: 1   MSKRLLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGICVYGSRCRYDHVKPSRPE 60

Query: 61  SAASSSSSV--------SHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCN 112
           S ASSS +V        + P+R  SSG+  V  V PELSA SRPF+ P+  AW+ ESV  
Sbjct: 61  STASSSLTVLASTSVSLALPARTVSSGVRTVLAVPPELSASSRPFIAPSTPAWDLESVQL 120

Query: 113 DSLEND--EVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPE 170
           D LE+   EV +PRN+KPADRS+CSFAAAG+CPRG+KCPHIHGD C  CGK CLHPFRP+
Sbjct: 121 DFLEDGDGEVIQPRNVKPADRSLCSFAAAGSCPRGDKCPHIHGDLCAYCGKHCLHPFRPD 180

Query: 171 EREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCI 230
           ER EH+K+CEKKQK+L+ L+ SQEIECSVCLDRVLSK TAAERKFGLLSEC+HPFCISCI
Sbjct: 181 ERNEHLKACEKKQKNLDLLKYSQEIECSVCLDRVLSKLTAAERKFGLLSECNHPFCISCI 240

Query: 231 RNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
           RNWR SSPTSGMDVN++LRACPICRKLSYFVIPSVIWY T EEKQEI+D+YK KL+
Sbjct: 241 RNWRGSSPTSGMDVNSSLRACPICRKLSYFVIPSVIWYSTKEEKQEIVDTYKEKLR 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450157|ref|XP_002279882.1| PREDICTED: E3 ubiquitin-protein ligase makorin-like [Vitis vinifera]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/298 (74%), Positives = 245/298 (82%), Gaps = 13/298 (4%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVK----- 55
           MSKRV CKFFAHGACLKG+HCEFSHDWK  PNNICT+YQKG CSYG RCRYEHVK     
Sbjct: 1   MSKRVQCKFFAHGACLKGDHCEFSHDWKASPNNICTFYQKGVCSYGGRCRYEHVKVSHSQ 60

Query: 56  -------PSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPE 108
                   S  +     S+S++HPSR  ++G+   PGV PE SA SRP  PP + AWN E
Sbjct: 61  PSAPSSSTSSHQLLVPDSASLTHPSRTVTNGLIPAPGVPPEPSASSRPLFPPTQPAWNQE 120

Query: 109 SVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFR 168
           S   D LEN+ + EPR  +PAD+SICSFAAAG+CPRGEKCPHIHGD CPTCGK CLHPFR
Sbjct: 121 SGDQDFLENN-IGEPRTDRPADQSICSFAAAGSCPRGEKCPHIHGDLCPTCGKHCLHPFR 179

Query: 169 PEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCIS 228
           PEE EEH+++CEKKQKHLEAL+ SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCIS
Sbjct: 180 PEEIEEHLRTCEKKQKHLEALKHSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCIS 239

Query: 229 CIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
           CIRNWRSSSP SGMD+NTALRACPICRKLSYFVIPSVIWY T EEKQEI+DSYK+KL+
Sbjct: 240 CIRNWRSSSPASGMDINTALRACPICRKLSYFVIPSVIWYSTKEEKQEIVDSYKAKLR 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357457691|ref|XP_003599126.1| E3 ubiquitin-protein ligase makorin [Medicago truncatula] gi|355488174|gb|AES69377.1| E3 ubiquitin-protein ligase makorin [Medicago truncatula]

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/297 (70%), Positives = 238/297 (80%), Gaps = 15/297 (5%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MSKRVLCKFFAHGACLKGEHCEFSHDWK PPNNICT+YQKG C+YGSRCRY+HVK SR++
Sbjct: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKAPPNNICTFYQKGVCAYGSRCRYDHVKASRAQ 60

Query: 61  SAASSSSSVSHP-----------SRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPES 109
           S+  SSS   H            +R TS+G+        E S  S PF+ P++ AWN ES
Sbjct: 61  SSTPSSSITEHQPLVSESAVLGNTRVTSNGV----ATAAEFSLFSTPFVLPSEQAWNQES 116

Query: 110 VCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRP 169
              D L  D+V +     P++  ICSFAAAGNCPRGE+CPH+HGD CP+CG+QCLHPFRP
Sbjct: 117 AQLDFLREDDVVQSVITSPSELPICSFAAAGNCPRGEQCPHVHGDLCPSCGRQCLHPFRP 176

Query: 170 EEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISC 229
           EEREEHM SC  KQKHLEAL+RSQEIECSVCL+RVLSKPTAAERKFGLLSECDHPFC+SC
Sbjct: 177 EEREEHMMSCRNKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCVSC 236

Query: 230 IRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
           IRNWRSS+PT GMDVN+ LRACPICRKLSYFV+PSVIWY T EEK EIID+YK+KLK
Sbjct: 237 IRNWRSSNPTLGMDVNSTLRACPICRKLSYFVVPSVIWYATSEEKMEIIDTYKAKLK 293

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055241|ref|XP_002298439.1| predicted protein [Populus trichocarpa] gi|222845697|gb|EEE83244.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/286 (74%), Positives = 233/286 (81%), Gaps = 30/286 (10%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICT+YQKG CSYGSRCRYEHVKPSR E
Sbjct: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGICSYGSRCRYEHVKPSRPE 60

Query: 61  SAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEV 120
           S ASSS +V                              P +   +  S  +D LE+ EV
Sbjct: 61  STASSSLTV------------------------------PCQPLGSNSSAQHDFLEDGEV 90

Query: 121 DEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCE 180
            EPRN+KPADRSICSFAAAG+CPRG+KCPHIHGD C  CGK CLHPFRPEER+EH+K+CE
Sbjct: 91  IEPRNVKPADRSICSFAAAGSCPRGDKCPHIHGDLCAYCGKHCLHPFRPEERDEHLKACE 150

Query: 181 KKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTS 240
           KKQK+L+ L+ SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTS
Sbjct: 151 KKQKNLDLLKYSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTS 210

Query: 241 GMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
           GMDVNT+LRACPICRKLSYFVIPSVIWY + EEKQEI+D+YK+KL+
Sbjct: 211 GMDVNTSLRACPICRKLSYFVIPSVIWYSSKEEKQEIVDTYKAKLR 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557144|ref|XP_003546878.1| PREDICTED: E3 ubiquitin-protein ligase makorin-like [Glycine max]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/304 (71%), Positives = 239/304 (78%), Gaps = 23/304 (7%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICT+YQKG C+YGSRCRY+HVK SR +
Sbjct: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASREQ 60

Query: 61  SAASSSSSVSHP------------SRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPE 108
           S+A SSS V+ P            +RAT +G+        E S    P+  P++ AWN E
Sbjct: 61  SSAPSSS-VTEPQTPVSDTVAFGNTRATFNGV----ATAAEFSLSRSPYFLPSEPAWNQE 115

Query: 109 SVCN------DSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQ 162
            V N      + L  D V +     P++ SICSFAAAGNCPRGEKCPHIHGD CPTCGK 
Sbjct: 116 PVWNQEFGYNEPLGEDNVGQTIITSPSELSICSFAAAGNCPRGEKCPHIHGDLCPTCGKH 175

Query: 163 CLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECD 222
           CLHPFRPEEREEHMKSCE K KHL+AL+RSQEIECSVCL+ VLSKPTAAE KFGLLSECD
Sbjct: 176 CLHPFRPEEREEHMKSCENKHKHLDALKRSQEIECSVCLELVLSKPTAAECKFGLLSECD 235

Query: 223 HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYK 282
           HPFCISCIRNWRSS+PT GMDVN+ LRACPICRKLSYFVIPSVIWY T EEKQEIID+YK
Sbjct: 236 HPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDNYK 295

Query: 283 SKLK 286
           +KLK
Sbjct: 296 AKLK 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525651|ref|XP_003531437.1| PREDICTED: E3 ubiquitin-protein ligase makorin-like [Glycine max]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/303 (69%), Positives = 238/303 (78%), Gaps = 21/303 (6%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MSKR LCKFFAHGACLKGEHCEFSHDWKDPPNN+CT+YQKG C+YGSRCRY+HVK SR +
Sbjct: 1   MSKRFLCKFFAHGACLKGEHCEFSHDWKDPPNNVCTFYQKGVCAYGSRCRYDHVKASREQ 60

Query: 61  SAASSSSSVS-----------HPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPES 109
           S+A SSS +              +RA S+G+        E S  S P+L P++ AWN E 
Sbjct: 61  SSAPSSSVIEPQTLVSDTVAFGNTRAASNGV----ATGAEFSLSSSPYLLPSEPAWNREL 116

Query: 110 VCN------DSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQC 163
           V N      + L  D V +     P++ SICSFA AGNCPRGEKCPHIHGD CPTCGK C
Sbjct: 117 VWNQEFGYHEPLWEDNVGQSIITSPSELSICSFAGAGNCPRGEKCPHIHGDLCPTCGKHC 176

Query: 164 LHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDH 223
           LHPFRPEEREEHMK+CE K+KHLEAL++SQEIECSVCL+ VLSKPTAAE KFGLLSECDH
Sbjct: 177 LHPFRPEEREEHMKTCENKRKHLEALKQSQEIECSVCLEHVLSKPTAAECKFGLLSECDH 236

Query: 224 PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKS 283
           PFCISCIRNWRSS+PT GMDVN+ LRACPICRKLSYFVIPSVIWY T EEKQEII++YK+
Sbjct: 237 PFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIINNYKA 296

Query: 284 KLK 286
           KLK
Sbjct: 297 KLK 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489044|ref|XP_004158198.1| PREDICTED: zinc finger CCCH domain-containing protein 69-like [Cucumis sativus]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/293 (67%), Positives = 233/293 (79%), Gaps = 7/293 (2%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MSKRVLCK+FAHGACLKGE+CEFSHDW  PP+N+CTYYQKG C++GSRCRY+HVK S +E
Sbjct: 1   MSKRVLCKYFAHGACLKGEYCEFSHDWTAPPSNVCTYYQKGRCAFGSRCRYDHVKVSHAE 60

Query: 61  SAAS-----SSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPP-NKTAWNPESVCNDS 114
           S ++      S SVS      S  ++   G   EL++   P LP   + AW+ E V  D 
Sbjct: 61  SCSNVQQSHGSESVSVAHSQLSRPLSPFSGSTSELASSEIPSLPLREEAAWSGEFVRPDG 120

Query: 115 LENDEVDEPRNLKPADRSICSFAAAG-NCPRGEKCPHIHGDTCPTCGKQCLHPFRPEERE 173
           L++    E R + PAD  ICSFAAAG +CPRGE CPHIHGD CPTCGKQCLHPFR +ERE
Sbjct: 121 LDDWVNGEARVVGPADIPICSFAAAGGDCPRGENCPHIHGDLCPTCGKQCLHPFRTDERE 180

Query: 174 EHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNW 233
           EH+K+CEKKQKHLE+L+ SQ+IECSVCL+RVLSK   AERKFG+LSECDHPFCISCIRNW
Sbjct: 181 EHLKACEKKQKHLESLKHSQDIECSVCLERVLSKTETAERKFGILSECDHPFCISCIRNW 240

Query: 234 RSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
           R+SS TSGMD+N+ALRACPICRKLSYFVIPSVIWY + EEKQEI+DSYKS+L+
Sbjct: 241 RNSSSTSGMDINSALRACPICRKLSYFVIPSVIWYSSKEEKQEIVDSYKSRLR 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436285|ref|XP_004135923.1| PREDICTED: zinc finger CCCH domain-containing protein 69-like [Cucumis sativus]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/293 (67%), Positives = 233/293 (79%), Gaps = 7/293 (2%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MSKRVLCK+FAHGACLKGE+CEFSHDW  PP+N+CTYYQKG C++GSRCRY+HVK S +E
Sbjct: 1   MSKRVLCKYFAHGACLKGEYCEFSHDWTAPPSNVCTYYQKGRCAFGSRCRYDHVKVSHAE 60

Query: 61  SAAS-----SSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPP-NKTAWNPESVCNDS 114
           S ++      S SVS      S  ++   G   EL++   P LP   + AW+ E V  D 
Sbjct: 61  SCSNVQQSHGSESVSVAHSQLSRPLSPFSGSTSELASSEIPSLPLREEAAWSGEFVRPDG 120

Query: 115 LENDEVDEPRNLKPADRSICSFAAAG-NCPRGEKCPHIHGDTCPTCGKQCLHPFRPEERE 173
           L++    E R + PAD  ICSFAAAG +CPRGE CPHIHGD CPTCGKQCLHPFR +ERE
Sbjct: 121 LDDWVNGEARVVGPADIPICSFAAAGGDCPRGENCPHIHGDLCPTCGKQCLHPFRTDERE 180

Query: 174 EHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNW 233
           EH+K+CEKKQKHLE+L+ SQ+IECSVCL+RVLSK   AERKFG+LSECDHPFCISCIRNW
Sbjct: 181 EHLKACEKKQKHLESLKHSQDIECSVCLERVLSKTETAERKFGILSECDHPFCISCIRNW 240

Query: 234 RSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
           R+SS TSGMD+N+ALRACPICRKLSYFVIPSVIWY + EEKQEI+DSYKS+L+
Sbjct: 241 RNSSSTSGMDINSALRACPICRKLSYFVIPSVIWYSSKEEKQEIVDSYKSRLR 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374110480|sp|E0X9N4.1|C3H69_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 69; Short=AtC3H69 gi|304557030|gb|ADM35936.1| CCCH-type zinc finger protein C3H69 [Arabidopsis thaliana] gi|304557036|gb|ADM35941.1| CCCH-type zinc finger protein C3H69 [Arabidopsis thaliana]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/290 (68%), Positives = 231/290 (79%), Gaps = 7/290 (2%)

Query: 1   MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSE 60
           MSKR+LCKFFAHGACLKGEHCEFSHDWKDP NNICTYYQKG CSYGSRCRYEHVK SR  
Sbjct: 1   MSKRILCKFFAHGACLKGEHCEFSHDWKDPTNNICTYYQKGICSYGSRCRYEHVKASRPH 60

Query: 61  SAASSSSSVSHPSRATSSGITK---VPGVMP-ELSALSRPFLPPNKTAWNPESVCNDSLE 116
            +ASSSS+V  PS A++S       +PGV   +LS +    L P    WN +S+  DS++
Sbjct: 61  PSASSSSAVPRPSPASASNTLACAFLPGVAERDLSPVPSSSLKPT---WNLDSLHQDSVD 117

Query: 117 NDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHM 176
             +   P  +KP +  ICSFAAAG+CPRG +CPHIHG  CPTCGK CLHPFRP+EREEH 
Sbjct: 118 EVKTSNPGTVKPEELPICSFAAAGDCPRGNECPHIHGTICPTCGKCCLHPFRPDEREEHK 177

Query: 177 KSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSS 236
           K CEKK K LEAL+ SQEIEC VCL+RVLSK T AERKFGLL+ECDH FCI+CIRNWRSS
Sbjct: 178 KVCEKKHKQLEALKLSQEIECCVCLERVLSKATPAERKFGLLTECDHAFCIACIRNWRSS 237

Query: 237 SPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
           SP++GMDVN+ LRACPICRKLSYFV+PSVIW+  PEEK+EI+D+Y+ KL+
Sbjct: 238 SPSTGMDVNSTLRACPICRKLSYFVVPSVIWFSAPEEKKEIMDNYREKLR 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2831040	323	AT3G08505 [Arabidopsis thalian	0.597	0.529	0.729	4.7e-99
UNIPROTKB|G3V789	481	Mkrn1 "Protein Mkrn1" [Rattus	0.583	0.347	0.395	2.9e-54
RGD|1310618	417	Mkrn2 "makorin, ring finger pr	0.520	0.357	0.426	3.7e-54
UNIPROTKB|Q9UHC7	482	MKRN1 "E3 ubiquitin-protein li	0.608	0.360	0.379	4.8e-54
UNIPROTKB|F1SRP7	482	MKRN1 "Uncharacterized protein	0.608	0.360	0.379	6.1e-54
MGI|MGI:1914277	416	Mkrn2 "makorin, ring finger pr	0.510	0.350	0.435	7.8e-54
MGI|MGI:1859353	481	Mkrn1 "makorin, ring finger pr	0.583	0.347	0.389	1.6e-53
UNIPROTKB|E2REH2	416	MKRN2 "Uncharacterized protein	0.618	0.425	0.385	1.6e-53
UNIPROTKB|E2RRA5	487	MKRN1 "Uncharacterized protein	0.587	0.344	0.386	2e-53
UNIPROTKB|Q9H000	416	MKRN2 "Probable E3 ubiquitin-p	0.520	0.358	0.420	3.3e-53

TAIR|locus:2831040 AT3G08505 [Arabidopsis thaliana (taxid:3702)]

 Score = 739 (265.2 bits), Expect = 4.7e-99, Sum P(2) = 4.7e-99
 Identities = 127/174 (72%), Positives = 151/174 (86%)

Query:   116 ENDEVDEPRN---LKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEER 172
             +N++ D+  N   + P +  ICSFAAAG+CPRG +CPH+HGD C TCGK+CLHPFRPEER
Sbjct:    86 DNNDGDKSSNVYCIHPREYPICSFAAAGDCPRGNQCPHMHGDLCNTCGKKCLHPFRPEER 145

Query:   173 EEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN 232
             EEH K CEKKQKH+EAL++SQ+IECSVCLDR+LSK T  ERKFGLL+ECDHPFCI CIRN
Sbjct:   146 EEHTKECEKKQKHIEALKQSQDIECSVCLDRILSKATPGERKFGLLTECDHPFCIQCIRN 205

Query:   233 WRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLK 286
             WRSS+P SGMDVN+ LRACPICRKLSYFV+PSV+WY +PEEK+EIID YK+KL+
Sbjct:   206 WRSSAPVSGMDVNSTLRACPICRKLSYFVVPSVVWYSSPEEKKEIIDIYKAKLR 259

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

UNIPROTKB|G3V789 Mkrn1 "Protein Mkrn1" [Rattus norvegicus (taxid:10116)]

 Score = 383 (139.9 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
 Identities = 70/177 (39%), Positives = 109/177 (61%)

Query:   114 SLENDEVD-EPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEER 172
             S+  +E + EP  ++  ++ +C +AA G C  GE C ++HGD+C  CG Q LHP    +R
Sbjct:   194 SVTKEESEKEPTTVE-TEKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQR 252

Query:   173 EEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCIS 228
              +H+KSC E  +K +E   A++RS+++ C +C++ V  K   +ER+FG+LS C+H +C+ 
Sbjct:   253 SQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLK 312

Query:   229 CIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKL 285
             CIR WRS+        +  +++CP CR  S FVIPS  W    EEKQ++I  YK  +
Sbjct:   313 CIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLIQKYKEAM 365

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1310618 Mkrn2 "makorin, ring finger protein, 2" [Rattus norvegicus (taxid:10116)]

 Score = 377 (137.8 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
 Identities = 67/157 (42%), Positives = 100/157 (63%)

Query:   130 DRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKH-LE- 187
             ++ +C +AAAG C  G+ C ++HGD C  C  Q LHPF PE+R+ H K C    +H +E 
Sbjct:   168 EQQLCPYAAAGECRFGDACVYLHGDMCEICRLQVLHPFDPEQRKAHEKMCMSTFEHEMEK 227

Query:   188 --ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVN 245
               A + SQ+  CS+C++ +L K +A+ER+FG+LS C H +C+SCIR WR +        N
Sbjct:   228 AFAFQASQDKVCSICMEVILEKASASERRFGILSNCSHTYCLSCIRQWRCAKQFE----N 283

Query:   246 TALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYK 282
               +++CP CR +S FVIPSV W     +K E+I+++K
Sbjct:   284 PIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFK 320

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9UHC7 MKRN1 "E3 ubiquitin-protein ligase makorin-1" [Homo sapiens (taxid:9606)]

 Score = 380 (138.8 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
 Identities = 69/182 (37%), Positives = 108/182 (59%)

Query:   108 ESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPF 167
             E+    S+  +E ++ +      + +C +AA G C  GE C ++HGD+C  CG Q LHP 
Sbjct:   188 EAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPM 247

Query:   168 RPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDH 223
                +R +H+KSC E  +K +E   A++RS+++ C +C++ V  K   +ER+FG+LS C+H
Sbjct:   248 DAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNH 307

Query:   224 PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKS 283
              +C+ CIR WRS+        +  +++CP CR  S FVIPS  W    EEKQ++I  YK 
Sbjct:   308 TYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILKYKE 363

Query:   284 KL 285
              +
Sbjct:   364 AM 365

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1SRP7 MKRN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 380 (138.8 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 69/182 (37%), Positives = 106/182 (58%)

Query:   108 ESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPF 167
             E+    S+   E ++ +      + +C +AA G C  GE C ++HGD C  CG Q LHP 
Sbjct:   188 EAPLQSSVTKQESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDPCDMCGLQVLHPV 247

Query:   168 RPEEREEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDH 223
                +R +H+KSC E  +K +E   A++RS+++ C +C++ V  K   +ER+FG+LS C+H
Sbjct:   248 DAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNH 307

Query:   224 PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKS 283
              +C+ CIR WRS+        +  +++CP CR  S FVIPS  W    EEKQ++I  YK 
Sbjct:   308 TYCLKCIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLIQKYKE 363

Query:   284 KL 285
              +
Sbjct:   364 AM 365

GO:0003682 "chromatin binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1914277 Mkrn2 "makorin, ring finger protein, 2" [Mus musculus (taxid:10090)]

 Score = 374 (136.7 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
 Identities = 67/154 (43%), Positives = 98/154 (63%)

Query:   133 ICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKH-LE---A 188
             +C +AAAG C  G+ C ++HGD C  C  Q LHPF PE+R+ H K C    +H +E   A
Sbjct:   170 LCPYAAAGECRFGDACVYLHGDMCEICRLQVLHPFDPEQRKAHEKMCMSTFEHEMEKAFA 229

Query:   189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTAL 248
              + SQ+  CS+C++ +L K +A+ER+FG+LS C H +C+SCIR WR +        N  +
Sbjct:   230 FQASQDKVCSICMEVILEKASASERRFGILSNCSHTYCLSCIRQWRCAKQFE----NPII 285

Query:   249 RACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYK 282
             ++CP CR +S FVIPSV W     +K E+I+++K
Sbjct:   286 KSCPECRVISEFVIPSVYWVEDQNKKNELIEAFK 319

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1859353 Mkrn1 "makorin, ring finger protein, 1" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 69/177 (38%), Positives = 108/177 (61%)

Query:   114 SLENDEVD-EPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEER 172
             S+  +E + EP  ++   + +C +AA G C  GE C ++HGD+C  CG Q LHP    +R
Sbjct:   194 SVTKEESEKEPTTVE-TKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPVDAAQR 252

Query:   173 EEHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCIS 228
              +H+KSC E  +K +E   A++R++++ C +C++ V  K   +ER+FG+LS C+H +C+ 
Sbjct:   253 SQHIKSCIEAHEKDMELSFAVQRTKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLK 312

Query:   229 CIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKL 285
             CIR WRS+        +  +++CP CR  S FVIPS  W    EEKQ++I  YK  +
Sbjct:   313 CIRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLIQKYKEAM 365

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2REH2 MKRN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 374 (136.7 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 72/187 (38%), Positives = 112/187 (59%)

Query:   101 NKTAWNPESVCNDSLENDEVD-EPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTC 159
             N     P S   D++ +   D E  +   +++ +C +AAAG C  G+ C ++HG+ C  C
Sbjct:   138 NSPEMKPHSYL-DAIRSGLDDLEASSSYSSEQQLCPYAAAGECRFGDACVYLHGEVCEIC 196

Query:   160 GKQCLHPFRPEEREEHMKSCEKKQKH-LE---ALRRSQEIECSVCLDRVLSKPTAAERKF 215
               + LHPF PE+R+ H K C    +H +E   A + SQ+  CS+C++ VL K +A+ER+F
Sbjct:   197 RLRVLHPFDPEQRKAHEKICMSTFEHEMEKAFAFQASQDKVCSICMEVVLEKASASERRF 256

Query:   216 GLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQ 275
             G+LS C+H +C+SCIR WR +        N  +++CP CR +S FVIPSV W     +K 
Sbjct:   257 GILSNCNHTYCLSCIRQWRCAKQFE----NPIIKSCPECRVISEFVIPSVYWVEDQNKKN 312

Query:   276 EIIDSYK 282
             E+I+++K
Sbjct:   313 ELIEAFK 319

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RRA5 MKRN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 382 (139.5 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
 Identities = 68/176 (38%), Positives = 106/176 (60%)

Query:   114 SLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEERE 173
             S+  +E ++ +      + +C +AA G C  GE C ++HGD+C  CG Q LHP    +R 
Sbjct:   199 SVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRS 258

Query:   174 EHMKSC-EKKQKHLE---ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISC 229
             +H+KSC E  +K +E   A++RS+++ C +C++ V  K   +ER+FG+LS C+H +C+ C
Sbjct:   259 QHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKC 318

Query:   230 IRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKL 285
             IR WRS+        +  +++CP CR  S FVIPS  W    EEKQ++I  YK  +
Sbjct:   319 IRKWRSAKQFE----SKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLIQKYKEAM 370

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9H000 MKRN2 "Probable E3 ubiquitin-protein ligase makorin-2" [Homo sapiens (taxid:9606)]

 Score = 372 (136.0 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
 Identities = 66/157 (42%), Positives = 101/157 (64%)

Query:   130 DRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKH-LE- 187
             ++ +C +AAAG C  G+ C ++HG+ C  C  Q LHPF PE+R+ H K C    +H +E 
Sbjct:   167 EQQLCPYAAAGECRFGDACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEK 226

Query:   188 --ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVN 245
               A + SQ+  CS+C++ +L K +A+ER+FG+LS C+H +C+SCIR WR +        N
Sbjct:   227 AFAFQASQDKVCSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFE----N 282

Query:   246 TALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYK 282
               +++CP CR +S FVIPSV W     +K E+I+++K
Sbjct:   283 PIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFK 319

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6IDS6	C3H35_ARATH	6, ., 3, ., 2, ., -	0.6083	0.9055	0.8018	yes	no
E0X9N4	C3H69_ARATH	No assigned EC number	0.6862	0.9895	0.8085	yes	no
Q5ZA07	C3H41_ORYSJ	6, ., 3, ., 2, ., -	0.6204	0.9965	0.7744	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
PHA03096	284	PHA03096, PHA03096, p28-like protein; Provisional	5e-13
PHA02926	242	PHA02926, PHA02926, zinc finger-like protein; Prov	1e-11
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	2e-11
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.002
COG5084	285	COG5084, YTH1, Cleavage and polyadenylation specif	0.002
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.004
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	0.004

>gnl|CDD|222981 PHA03096, PHA03096, p28-like protein; Provisional

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 27/155 (17%)

Query: 141 NCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVC 200
           NC +G+ C ++HGD C  C K  LHP   ++R    K+C   Q  L   +      C +C
Sbjct: 130 NCYKGKYCEYLHGDICDICEKYLLHPTDIKQRYNEQKTCLSYQLRLLLSKI-----CGIC 184

Query: 201 LDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260
           L+ + +K    ++ +G+LSE  H F I CI+ W        M  +      P  R+L+  
Sbjct: 185 LENIKAKYI-IKKYYGILSEIKHEFNIFCIKIW--------MTESLYKETEPENRRLNTV 235

Query: 261 V-------------IPSVIWYYTPEEKQEIIDSYK 282
           +             IPS  W     +K  +   YK
Sbjct: 236 IVFIEKINEDLKNNIPSRYWIDDKYDKNLLSFRYK 270

Length = 284

>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional

 Score = 62.8 bits (152), Expect = 1e-11
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 184 KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMD 243
           K+ +  R S+E EC +C + V SK    +R FGLL  C+H FCI+CI  W  +   +G  
Sbjct: 160 KYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGAS 219

Query: 244 VNTALRACPICR 255
            N     CPICR
Sbjct: 220 DN-----CPICR 226

Length = 242

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 29/111 (26%)

Query: 171 EREEHM--KSCEKKQKHLEAL---------------RRSQEIECSVCLDRVLSKPTAAER 213
            +EE M      KK K+ +                  RS++ EC++C+++V  K      
Sbjct: 134 RKEEDMFYAIINKKGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKN-M 192

Query: 214 KFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264
            FG+LS C+H FCI CI  W+    T           CP+CR     VI S
Sbjct: 193 YFGILSNCNHVFCIECIDIWKKEKNT-----------CPVCRTPFISVIKS 232

Length = 238

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 7/22 (31%), Positives = 15/22 (68%)

Query: 34 ICTYYQKGFCSYGSRCRYEHVK 55
          +C ++++G+C  G RC++ H  
Sbjct: 6  LCKFFKRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|227416 COG5084, YTH1, Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 5   VLCKFFAHGACLKGEHCEFSH--DWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKPSRSES 61
           V+CKFF  G C  G  CEF H  D +      C  +  KG CS G  C Y H+ P     
Sbjct: 105 VVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPDSFAG 164

Query: 62  -----AASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKT 103
                + ++       +    S   K             P   P  T
Sbjct: 165 NCDQYSGATYGFCPLGASCKFSHTLKRVSYGSSPCGNYTPPFSPPGT 211

Length = 285

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 2  SKRVLCKFFAHGACLKGEHCEFSHD 26
           K  LCKFF  G C +G+ C+F+H 
Sbjct: 2  YKTELCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 18/61 (29%)

Query: 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255
           EC +CL+    +P        +L  C H FC SCI  W  S   +          CP+CR
Sbjct: 1   ECPICLEE-FREPV-------VLLPCGHVFCRSCIDKWLKSGKNT----------CPLCR 42

Query: 256 K 256
            
Sbjct: 43  T 43

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
PHA03096	284	p28-like protein; Provisional	99.96
PHA02926	242	zinc finger-like protein; Provisional	99.81
PHA02929	238	N1R/p28-like protein; Provisional	99.48
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.25
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.19
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.13
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.98
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.95
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.93
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.93
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	98.88
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.86
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.84
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.79
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.79
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.78
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.76
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.73
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.72
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.71
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.7
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	98.7
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.67
COG5152	259	Uncharacterized conserved protein, contains RING a	98.62
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.6
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.58
PF14634	44	zf-RING_5: zinc-RING finger domain	98.54
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.49
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.47
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.44
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.41
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.36
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.35
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.33
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.33
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.32
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.26
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.26
KOG1040	325	consensus Polyadenylation factor I complex, subuni	98.25
KOG1763	343	consensus Uncharacterized conserved protein, conta	98.24
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.22
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.11
smart00356	27	ZnF_C3H1 zinc finger.	98.09
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.08
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	98.04
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.03
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	97.96
KOG4791	667	consensus Uncharacterized conserved protein [Funct	97.88
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.82
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	97.8
smart00356	27	ZnF_C3H1 zinc finger.	97.78
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.77
KOG4791	667	consensus Uncharacterized conserved protein [Funct	97.76
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.73
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	97.55
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.47
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.41
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.38
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.38
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.35
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	97.34
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	97.29
KOG2660	331	consensus Locus-specific chromosome binding protei	97.13
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.03
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.98
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	96.97
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	96.95
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	96.94
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	96.87
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	96.8
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	96.72
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.68
COG5219	1525	Uncharacterized conserved protein, contains RING Z	96.64
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	96.61
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	96.58
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.56
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.53
KOG2333	614	consensus Uncharacterized conserved protein [Gener	96.52
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.49
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	96.47
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	96.39
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.23
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.09
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.95
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.79
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.78
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.57
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.42
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.78
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.43
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.26
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	94.08
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	93.95
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	93.81
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	93.66
PF04641	260	Rtf2: Rtf2 RING-finger	93.58
KOG3799	169	consensus Rab3 effector RIM1 and related proteins,	93.53
KOG2333	614	consensus Uncharacterized conserved protein [Gener	93.12
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.07
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	93.06
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	93.0
COG5152	259	Uncharacterized conserved protein, contains RING a	92.95
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	92.85
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	92.85
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	92.8
KOG4739	233	consensus Uncharacterized protein involved in syna	92.74
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	92.6
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	92.07
KOG4367	699	consensus Predicted Zn-finger protein [Function un	91.99
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	91.77
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	91.55
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	90.99
KOG3039	303	consensus Uncharacterized conserved protein [Funct	90.99
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	90.92
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	90.34
KOG3053	293	consensus Uncharacterized conserved protein [Funct	89.92
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	89.84
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	89.58
KOG1763	343	consensus Uncharacterized conserved protein, conta	89.53
KOG1001	674	consensus Helicase-like transcription factor HLTF/	89.47
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	89.1
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	87.21
PHA02825	162	LAP/PHD finger-like protein; Provisional	86.34
KOG1815	444	consensus Predicted E3 ubiquitin ligase [Posttrans	85.86
KOG0153	377	consensus Predicted RNA-binding protein (RRM super	85.76
COG5175	480	MOT2 Transcriptional repressor [Transcription]	85.75
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	84.46
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	84.35
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	83.72
KOG3002	299	consensus Zn finger protein [General function pred	81.25
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	80.93

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-37  Score=287.68  Aligned_cols=242  Identities=29%  Similarity=0.593  Sum_probs=176.6

Q ss_pred             cCCCCCCCcccccccCCCCCCCCCcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC-CCCCCccccCCCCCCCCCCC
Q 023176           25 HDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKV-PGVMPELSALSRPFLPPNKT  103 (286)
Q Consensus        25 H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~pe~s~~~~p~~~~~~~  103 (286)
                      ||+......+|+||++|.|.||+.|+|.|+.+.........+..+.+..+.   +.... -+...+           +.+
T Consensus         1 ~d~~~~~~tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~~---~~~~~~~~~~~~-----------~~~   66 (344)
T KOG1039|consen    1 HDLSLSQETICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAST---GLSQSLIWANAV-----------ADA   66 (344)
T ss_pred             CccccccchhhhhcccccccccceeeeeccCchhhcccccccccccccccc---ccchhhcccchh-----------hcc
Confidence            676665558999999999999999999999985211111111100000000   00000 000000           001


Q ss_pred             CCCCCCcCCCCCCccccCCCCCCCCCCccCChhhhcCCCCCCCCCcccCCCCCCCCCCccccCCChHHHHHHHHHHH-HH
Q 023176          104 AWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCE-KK  182 (286)
Q Consensus       104 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~c~~c~~~~l~p~~~~~~~e~~~~~~-~~  182 (286)
                      .+...........+.....+.. .+...++|+|...|.|.+|..|.++|++.|++|+...+||.+..+++.|++.|. ..
T Consensus        67 s~~~s~~~~~~~~~~~~s~~~~-~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~  145 (344)
T KOG1039|consen   67 SATMSVSSRPVLTAIRASSSIS-EPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCA  145 (344)
T ss_pred             ccccchhcccchhhhhhhhccc-cccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhccccccc
Confidence            0000000000011111111111 344568899999999999999999999999999999999999999999999993 32


Q ss_pred             H----HHHHHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          183 Q----KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       183 ~----~~~~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      +    +..++.+.+++.+|+||||.|++++ +++++|||||||.|.||+.||++|++..++    +.++++.||+||+.+
T Consensus       146 ~~~~~e~~~a~~~s~~k~CGICme~i~ek~-~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~----~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  146 LSSAMERSFALQKSSEKECGICMETINEKA-ASERRFGILPNCNHSFCLNCIRKWRQATQF----ESKTSKSCPFCRVPS  220 (344)
T ss_pred             chHhhhhccCcCccccccceehhhhccccc-hhhhhcccCCCcchhhhhcHhHhhhhhhcc----ccccccCCCcccCcc
Confidence            2    4567889999999999999999998 899999999999999999999999988775    567889999999999


Q ss_pred             cccccCceeeCCcHHHHHHHHHHHhhcC
Q 023176          259 YFVIPSVIWYYTPEEKQEIIDSYKSKLK  286 (286)
Q Consensus       259 ~~~~p~~~~~~~~~~k~~li~~yk~~~~  286 (286)
                      .+|+|+.+||...++|+++|+.|++.++
T Consensus       221 ~~v~pS~~Wv~t~~~k~~li~e~~~~~s  248 (344)
T KOG1039|consen  221 SFVNPSSFWVETKEEKQKLIEEYEAEMS  248 (344)
T ss_pred             ccccccceeeeecccccccHHHHHHHhh
Confidence            9999999999999999999999999864

>PHA03096 p28-like protein; Provisional

Probab=99.96  E-value=5e-30  Score=234.15  Aligned_cols=135  Identities=30%  Similarity=0.538  Sum_probs=121.4

Q ss_pred             CCCCCCCCcccCCCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHHHHhccCcccccccccccccCccccccceeecCC
Q 023176          141 NCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSE  220 (286)
Q Consensus       141 ~C~~Gd~C~y~Hg~~c~~c~~~~l~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~  220 (286)
                      .|.+|++|.|+||+.|++||+++|||.|++|+.+|.+.|+..+..+...     .+|+||||.+++++ ..+++||+|++
T Consensus       130 ~c~~g~~c~~lHg~lC~~C~k~~Lhp~d~eqr~~h~k~c~~~~~~~~~~-----k~c~ic~e~~~~k~-~~~~~fgil~~  203 (284)
T PHA03096        130 NCYKGKYCEYLHGDICDICEKYLLHPTDIKQRYNEQKTCLSYQLRLLLS-----KICGICLENIKAKY-IIKKYYGILSE  203 (284)
T ss_pred             hcccccCcHHHHHHHHHhhcchhcCCcCHHHHHHHHHHHHHHHHHHHHH-----hhcccchhhhhhhc-ccccccccccc
Confidence            6899999999999999999999999999999999999999888644332     88999999999998 79999999999


Q ss_pred             CCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc----------ccCceeeCCcHHHHHHHHHHHhhcC
Q 023176          221 CDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV----------IPSVIWYYTPEEKQEIIDSYKSKLK  286 (286)
Q Consensus       221 C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~----------~p~~~~~~~~~~k~~li~~yk~~~~  286 (286)
                      |.|.||+.||+.|+..+.     ...+.+.||.||..+.||          +|+.+|+.++++|+.|+.+||+.++
T Consensus       204 c~h~fc~~ci~~wr~~~~-----~~e~~~~c~~~~~~~~~v~~~~~~~~~~ips~~w~~~~~~K~~l~~~yk~~~~  274 (284)
T PHA03096        204 IKHEFNIFCIKIWMTESL-----YKETEPENRRLNTVIVFIEKINEDLKNNIPSRYWIDDKYDKNLLSFRYKKMHI  274 (284)
T ss_pred             CCcHHHHHHHHHHHHhhh-----hcccCccccchhhHHHHHhhcchhhhccCCchhhhcChHHHHHHHHHHHHhhc
Confidence            999999999999999865     245567777777777788          9999999999999999999998763

>PHA02926 zinc finger-like protein; Provisional

Probab=99.81  E-value=1.3e-20  Score=163.88  Aligned_cols=77  Identities=38%  Similarity=0.764  Sum_probs=68.0

Q ss_pred             HHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCce
Q 023176          187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI  266 (286)
Q Consensus       187 ~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~  266 (286)
                      ...++++|.+|+||||.+++|+.+++|+||+|++|+|.||+.||++|++.++.     .++.++||+||+.+.+|+|+.+
T Consensus       163 ~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~-----~~~~rsCPiCR~~f~~I~pSrf  237 (242)
T PHA02926        163 DVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRE-----TGASDNCPICRTRFRNITMSKF  237 (242)
T ss_pred             HHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccc-----cCcCCcCCCCcceeeeeccccc
Confidence            35678999999999999999977899999999999999999999999987542     3456899999999999999998


Q ss_pred             ee
Q 023176          267 WY  268 (286)
Q Consensus       267 ~~  268 (286)
                      +.
T Consensus       238 ~~  239 (242)
T PHA02926        238 YK  239 (242)
T ss_pred             ee
Confidence            64

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.48  E-value=3.1e-14  Score=127.30  Aligned_cols=68  Identities=38%  Similarity=0.907  Sum_probs=57.4

Q ss_pred             HhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceee
Q 023176          189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY  268 (286)
Q Consensus       189 ~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~  268 (286)
                      .+.+++.+|+||||.+.+++ ...++++++++|+|.||..||.+|++.+           .+||+||..+.+|+++.+|.
T Consensus       169 ~~~~~~~eC~ICle~~~~~~-~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-----------~tCPlCR~~~~~v~~~r~~~  236 (238)
T PHA02929        169 YNRSKDKECAICMEKVYDKE-IKNMYFGILSNCNHVFCIECIDIWKKEK-----------NTCPVCRTPFISVIKSRFFT  236 (238)
T ss_pred             hcCCCCCCCccCCcccccCc-cccccceecCCCCCcccHHHHHHHHhcC-----------CCCCCCCCEeeEEeeeeeee
Confidence            35677899999999766543 3456688999999999999999999754           38999999999999999985

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.25  E-value=4.1e-12  Score=83.98  Aligned_cols=42  Identities=38%  Similarity=0.935  Sum_probs=30.8

Q ss_pred             ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176          197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC  254 (286)
Q Consensus       197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C  254 (286)
                      |+||++ ++.+|       ++| .|||+||.+||.+|++..+..       ...||+|
T Consensus         1 CpiC~~-~~~~P-------v~l-~CGH~FC~~Cl~~~~~~~~~~-------~~~CP~C   42 (42)
T PF15227_consen    1 CPICLD-LFKDP-------VSL-PCGHSFCRSCLERLWKEPSGS-------GFSCPEC   42 (42)
T ss_dssp             ETTTTS-B-SSE-------EE--SSSSEEEHHHHHHHHCCSSSS-------T---SSS
T ss_pred             CCccch-hhCCc-------ccc-CCcCHHHHHHHHHHHHccCCc-------CCCCcCC
Confidence            899999 78888       788 599999999999999765431       1589998

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.19  E-value=8.1e-12  Score=116.26  Aligned_cols=54  Identities=35%  Similarity=0.882  Sum_probs=50.0

Q ss_pred             CCccccccccccCCCCCCCCCccCCCCCCCccccccc-CCCCCCCCCcccCCCCC
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKP   56 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~-~G~C~~G~~C~y~H~~~   56 (286)
                      ++++|+||++|.|++||.|.|+|+++..+.+.|.||. .|.|.+|..|.|.|..+
T Consensus        76 ~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dp  130 (325)
T KOG1040|consen   76 GKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDP  130 (325)
T ss_pred             CceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccCCcccCCCh
Confidence            5789999999999999999999999777888898877 79999999999999997

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.13  E-value=2.2e-11  Score=81.09  Aligned_cols=44  Identities=39%  Similarity=0.952  Sum_probs=34.1

Q ss_pred             ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCC
Q 023176          195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR  255 (286)
Q Consensus       195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR  255 (286)
                      .+|+||++.+...     ..+..++ |+|.||.+||.+|.+.+           .+||+||
T Consensus         1 d~C~IC~~~~~~~-----~~~~~l~-C~H~fh~~Ci~~~~~~~-----------~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDG-----EKVVKLP-CGHVFHRSCIKEWLKRN-----------NSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTT-----SCEEEET-TSEEEEHHHHHHHHHHS-----------SB-TTTH
T ss_pred             CCCcCCChhhcCC-----CeEEEcc-CCCeeCHHHHHHHHHhC-----------CcCCccC
Confidence            3699999975432     3456775 99999999999999874           3999998

...

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.98  E-value=4.4e-10  Score=97.13  Aligned_cols=64  Identities=28%  Similarity=0.722  Sum_probs=45.4

Q ss_pred             HHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCC-----CCcCCCcCcccCCCcccc
Q 023176          187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSG-----MDVNTALRACPICRKLSY  259 (286)
Q Consensus       187 ~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~-----~~~~~~~~~CP~CR~~~~  259 (286)
                      .+++..++.+|+||+| .+.+|       +++ .|||.||..||.+|........     .+..+....||+||..+.
T Consensus        11 ~~~~~~~~~~CpICld-~~~dP-------VvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         11 TLVDSGGDFDCNICLD-QVRDP-------VVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             eeccCCCccCCccCCC-cCCCc-------EEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            3456667899999999 56776       455 6999999999999986432100     001223469999999875

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.95  E-value=4.7e-10  Score=76.71  Aligned_cols=49  Identities=33%  Similarity=0.788  Sum_probs=36.5

Q ss_pred             CcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV  261 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~  261 (286)
                      ++..|.||++. ..+       ..++ .|||. ||..|+.+|++..           ..||+||+.+..|
T Consensus         1 ~~~~C~iC~~~-~~~-------~~~~-pCgH~~~C~~C~~~~~~~~-----------~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    1 EDEECPICFEN-PRD-------VVLL-PCGHLCFCEECAERLLKRK-----------KKCPICRQPIESV   50 (50)
T ss_dssp             -HSB-TTTSSS-BSS-------EEEE-TTCEEEEEHHHHHHHHHTT-----------SBBTTTTBB-SEE
T ss_pred             CcCCCccCCcc-CCc-------eEEe-CCCChHHHHHHhHHhcccC-----------CCCCcCChhhcCC
Confidence            46789999995 333       2566 59999 9999999999833           5999999987643

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.93  E-value=5.5e-10  Score=72.47  Aligned_cols=39  Identities=38%  Similarity=1.157  Sum_probs=30.5

Q ss_pred             ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176          197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC  254 (286)
Q Consensus       197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C  254 (286)
                      |+||++. +.+|       .++..|||.||.+||.+|.+.+           ..||+|
T Consensus         1 C~iC~~~-~~~~-------~~~~~CGH~fC~~C~~~~~~~~-----------~~CP~C   39 (39)
T PF13923_consen    1 CPICLDE-LRDP-------VVVTPCGHSFCKECIEKYLEKN-----------PKCPVC   39 (39)
T ss_dssp             ETTTTSB--SSE-------EEECTTSEEEEHHHHHHHHHCT-----------SB-TTT
T ss_pred             CCCCCCc-ccCc-------CEECCCCCchhHHHHHHHHHCc-----------CCCcCC
Confidence            8999995 5555       4556799999999999999763           489998

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.93  E-value=2.3e-09  Score=98.50  Aligned_cols=53  Identities=32%  Similarity=0.661  Sum_probs=46.1

Q ss_pred             ccccccccccCCCCCC-CCCccCCCC-----CCCcccccccCCCCCCCCCcccCCCCCCC
Q 023176            5 VLCKFFAHGACLKGEH-CEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPSR   58 (286)
Q Consensus         5 ~~C~~f~~G~C~~G~~-C~f~H~~~~-----~~~~~C~~f~~G~C~~G~~C~y~H~~~~~   58 (286)
                      .+||-|++|.|++||. |+|.|....     -+...|.+|++|.|. +++|+|.|...+.
T Consensus        38 eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCs-R~nCkylHpp~hl   96 (331)
T KOG2494|consen   38 EVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQKGRCS-RENCKYLHPPQHL   96 (331)
T ss_pred             HHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccccCccC-cccceecCCChhh
Confidence            5899999999999998 999997553     345579999999999 8999999998764

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.88  E-value=2.3e-09  Score=100.72  Aligned_cols=95  Identities=24%  Similarity=0.582  Sum_probs=71.0

Q ss_pred             ccccccc-cccCCCCCCCCCccCC-CC----------------CCCccccccc-CCCCCC-CCCcccCCCCCCCCCcccC
Q 023176            5 VLCKFFA-HGACLKGEHCEFSHDW-KD----------------PPNNICTYYQ-KGFCSY-GSRCRYEHVKPSRSESAAS   64 (286)
Q Consensus         5 ~~C~~f~-~G~C~~G~~C~f~H~~-~~----------------~~~~~C~~f~-~G~C~~-G~~C~y~H~~~~~~~~~~~   64 (286)
                      ..|.+++ .|.|..|+.|+|.|.. ..                .++.+|++|. .|.|+| |++|+|.|.......... 
T Consensus        87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~-  165 (332)
T KOG1677|consen   87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSS-  165 (332)
T ss_pred             cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccccccc-
Confidence            5788777 4999999999999985 11                2467899999 799999 999999999865442210 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCcCCCCCCccccCCCCCCCCCCccCChhh-hcCCCC
Q 023176           65 SSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFA-AAGNCP  143 (286)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lC~y~-~~G~C~  143 (286)
                                                                             ..........++.+|.+| .+|.|+
T Consensus       166 -------------------------------------------------------~~~~~~~~~~kt~lC~~f~~tG~C~  190 (332)
T KOG1677|consen  166 -------------------------------------------------------ENQVGNPPKYKTKLCPKFQKTGLCK  190 (332)
T ss_pred             -------------------------------------------------------chhhcCCCCCCCcCCCccccCCCCC
Confidence                                                                   000011134578999766 669999


Q ss_pred             CCCCCcccCCCC
Q 023176          144 RGEKCPHIHGDT  155 (286)
Q Consensus       144 ~Gd~C~y~Hg~~  155 (286)
                      ||.+|+|+|+..
T Consensus       191 yG~rC~F~H~~~  202 (332)
T KOG1677|consen  191 YGSRCRFIHGEP  202 (332)
T ss_pred             CCCcCeecCCCc
Confidence            999999999987

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.86  E-value=1.7e-09  Score=70.67  Aligned_cols=41  Identities=39%  Similarity=1.134  Sum_probs=32.6

Q ss_pred             ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176          197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC  254 (286)
Q Consensus       197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C  254 (286)
                      |+||++ ++.++       .++..|+|.||..||.+|++...         ...||+|
T Consensus         1 C~iC~~-~~~~~-------~~~~~C~H~fC~~C~~~~~~~~~---------~~~CP~C   41 (41)
T PF00097_consen    1 CPICLE-PFEDP-------VILLPCGHSFCRDCLRKWLENSG---------SVKCPLC   41 (41)
T ss_dssp             ETTTSS-BCSSE-------EEETTTSEEEEHHHHHHHHHHTS---------SSBTTTT
T ss_pred             CCcCCc-cccCC-------CEEecCCCcchHHHHHHHHHhcC---------CccCCcC
Confidence            899999 56665       43557999999999999998622         2589998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.84  E-value=1.1e-09  Score=95.95  Aligned_cols=49  Identities=31%  Similarity=0.811  Sum_probs=25.4

Q ss_pred             ccccccc-cccCCCCCCCCCccCCCCCCCcccccccCCCCCCCCCcccCCCC
Q 023176            5 VLCKFFA-HGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVK   55 (286)
Q Consensus         5 ~~C~~f~-~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~   55 (286)
                      +.||||. +|.|-+|..|+|.|+...  ..+|.-|++|.|.....|..+|..
T Consensus       207 vycryynangicgkgaacrfvheptr--kticpkflngrcnkaedcnlshel  256 (377)
T KOG1492|consen  207 VYCRYYNANGICGKGAACRFVHEPTR--KTICPKFLNGRCNKAEDCNLSHEL  256 (377)
T ss_pred             eEEEEecCCCcccCCceeeeeccccc--cccChHHhcCccCchhcCCccccc
Confidence            3455444 455555555555554333  445555555555555555555544

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.79  E-value=4.3e-09  Score=77.80  Aligned_cols=51  Identities=25%  Similarity=0.683  Sum_probs=35.1

Q ss_pred             CcccccccccccccCc-----cccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCC
Q 023176          193 QEIECSVCLDRVLSKP-----TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR  255 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~-----~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR  255 (286)
                      .+..|+||++.+.+..     +..+..+.+. .|||.|+..||.+|.+.+           .+||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQN-----------NTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTTS-----------SB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhcC-----------CcCCCCC
Confidence            3556999999763321     0123444444 699999999999999764           3999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.79  E-value=5.4e-09  Score=68.31  Aligned_cols=44  Identities=43%  Similarity=1.111  Sum_probs=34.7

Q ss_pred             cccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176          196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL  257 (286)
Q Consensus       196 ~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~  257 (286)
                      +|+||++.+ .++       .+++.|+|.||..|+..|.+...          ..||+||..
T Consensus         1 ~C~iC~~~~-~~~-------~~~~~C~H~~c~~C~~~~~~~~~----------~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEF-REP-------VVLLPCGHVFCRSCIDKWLKSGK----------NTCPLCRTP   44 (45)
T ss_pred             CCCcCchhh-hCc-------eEecCCCChhcHHHHHHHHHhCc----------CCCCCCCCc
Confidence            599999964 443       45556999999999999997622          489999975

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.78  E-value=6.8e-09  Score=99.33  Aligned_cols=69  Identities=30%  Similarity=0.621  Sum_probs=53.1

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT  270 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~  270 (286)
                      ....+.|+||++ ++..|       +++ .|+|.||..||+.|+...           ..||+||..+...     -+..
T Consensus        23 Le~~l~C~IC~d-~~~~P-------vit-pCgH~FCs~CI~~~l~~~-----------~~CP~Cr~~~~~~-----~Lr~   77 (397)
T TIGR00599        23 LDTSLRCHICKD-FFDVP-------VLT-SCSHTFCSLCIRRCLSNQ-----------PKCPLCRAEDQES-----KLRS   77 (397)
T ss_pred             cccccCCCcCch-hhhCc-------cCC-CCCCchhHHHHHHHHhCC-----------CCCCCCCCccccc-----cCcc
Confidence            445789999999 67777       555 699999999999998642           3799999986421     2345


Q ss_pred             cHHHHHHHHHHHhh
Q 023176          271 PEEKQEIIDSYKSK  284 (286)
Q Consensus       271 ~~~k~~li~~yk~~  284 (286)
                      +...++||+.|+..
T Consensus        78 N~~L~~iVe~~~~~   91 (397)
T TIGR00599        78 NWLVSEIVESFKNL   91 (397)
T ss_pred             chHHHHHHHHHHHh
Confidence            56688899999853

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=3.6e-09  Score=95.80  Aligned_cols=47  Identities=40%  Similarity=0.962  Sum_probs=38.8

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      ..+-.|.||||. .++|       .-+ .|||+||.+||.+|-+.++           .||+||..+
T Consensus       237 ~a~~kC~LCLe~-~~~p-------SaT-pCGHiFCWsCI~~w~~ek~-----------eCPlCR~~~  283 (293)
T KOG0317|consen  237 EATRKCSLCLEN-RSNP-------SAT-PCGHIFCWSCILEWCSEKA-----------ECPLCREKF  283 (293)
T ss_pred             CCCCceEEEecC-CCCC-------CcC-cCcchHHHHHHHHHHcccc-----------CCCcccccC
Confidence            446889999995 5566       344 5999999999999998764           699999986

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=6.1e-09  Score=91.71  Aligned_cols=56  Identities=30%  Similarity=0.902  Sum_probs=44.8

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc--cccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIP  263 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~--~~~p  263 (286)
                      ...+.+|.||||. -++|        |++.|||.||..||-+|......        .+.||+|+..+.  .|||
T Consensus        44 ~~~~FdCNICLd~-akdP--------VvTlCGHLFCWpClyqWl~~~~~--------~~~cPVCK~~Vs~~~vvP  101 (230)
T KOG0823|consen   44 DGGFFDCNICLDL-AKDP--------VVTLCGHLFCWPCLYQWLQTRPN--------SKECPVCKAEVSIDTVVP  101 (230)
T ss_pred             CCCceeeeeeccc-cCCC--------EEeecccceehHHHHHHHhhcCC--------CeeCCccccccccceEEe
Confidence            4567899999994 6665        55579999999999999987654        368999998875  5555

>smart00504 Ubox Modified RING finger domain

Probab=98.72  E-value=1.5e-08  Score=71.99  Aligned_cols=46  Identities=22%  Similarity=0.439  Sum_probs=38.6

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ++.|+||++ ++++|       +++ .|||+||..||.+|.+..           ..||+|+....
T Consensus         1 ~~~Cpi~~~-~~~~P-------v~~-~~G~v~~~~~i~~~~~~~-----------~~cP~~~~~~~   46 (63)
T smart00504        1 EFLCPISLE-VMKDP-------VIL-PSGQTYERRAIEKWLLSH-----------GTDPVTGQPLT   46 (63)
T ss_pred             CcCCcCCCC-cCCCC-------EEC-CCCCEEeHHHHHHHHHHC-----------CCCCCCcCCCC
Confidence            467999999 67777       677 599999999999999762           48999998863

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1.3e-08  Score=98.54  Aligned_cols=72  Identities=26%  Similarity=0.634  Sum_probs=48.9

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc--cccCceeeCC
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYYT  270 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~--~~p~~~~~~~  270 (286)
                      .+..|+|||+. .        .++.+.+|||+||..||.+.+....      ...-+.||+||..+..  |-| .+|..+
T Consensus       185 t~~~CPICL~~-~--------~~p~~t~CGHiFC~~CiLqy~~~s~------~~~~~~CPiC~s~I~~kdl~p-v~~e~~  248 (513)
T KOG2164|consen  185 TDMQCPICLEP-P--------SVPVRTNCGHIFCGPCILQYWNYSA------IKGPCSCPICRSTITLKDLLP-VFIEDD  248 (513)
T ss_pred             cCCcCCcccCC-C--------CcccccccCceeeHHHHHHHHhhhc------ccCCccCCchhhhccccceee-eeeccc
Confidence            38999999995 2        2356668999999999987665431      2334799999999875  554 455544


Q ss_pred             cHHHHHHHHHHH
Q 023176          271 PEEKQEIIDSYK  282 (286)
Q Consensus       271 ~~~k~~li~~yk  282 (286)
                       ..|++ ++.+-
T Consensus       249 -qkke~-l~~~~  258 (513)
T KOG2164|consen  249 -QKKEE-LKLHQ  258 (513)
T ss_pred             -cccHH-HHHHh
Confidence             23333 55443

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.70  E-value=7.8e-09  Score=90.76  Aligned_cols=85  Identities=33%  Similarity=0.759  Sum_probs=74.1

Q ss_pred             CCccccccccccCCCCCCCCCccCCCCCCCcccccccCCCCCCCCCcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITK   82 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (286)
                      ...+|.-|++|+|.+.++|.++|+++.++.+.|+||+-|.|. ..+|+|.|..-.                         
T Consensus       232 rkticpkflngrcnkaedcnlsheldprripacryfllgkcn-npncryvhihys-------------------------  285 (377)
T KOG1492|consen  232 RKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCN-NPNCRYVHIHYS-------------------------  285 (377)
T ss_pred             ccccChHHhcCccCchhcCCcccccCccccchhhhhhhccCC-CCCceEEEEeec-------------------------
Confidence            567999999999999999999999999999999999999998 899999998622                         


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCCCCCcCCCCCCccccCCCCCCCCCCccCC-hhhhcCCCCCCCCCcccCCCCCCCC
Q 023176           83 VPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSIC-SFAAAGNCPRGEKCPHIHGDTCPTC  159 (286)
Q Consensus        83 ~~g~~pe~s~~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lC-~y~~~G~C~~Gd~C~y~Hg~~c~~c  159 (286)
                                                                    ...++| -|+.-|+|..|..|.-.|-..|...
T Consensus       286 ----------------------------------------------enapicfefakygfcelgtscknqhilqctdy  317 (377)
T KOG1492|consen  286 ----------------------------------------------ENAPICFEFAKYGFCELGTSCKNQHILQCTDY  317 (377)
T ss_pred             ----------------------------------------------CCCceeeeehhcceeccccccccceeeeecch
Confidence                                                          012567 6889999999999999998887643

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.70  E-value=7.5e-08  Score=90.43  Aligned_cols=59  Identities=42%  Similarity=0.973  Sum_probs=49.9

Q ss_pred             CCccccccc-cccCCC-CCCCCCccCCCC---------------CCCcccccccC-CCCCCCCCcccCCCCCCCCCc
Q 023176            3 KRVLCKFFA-HGACLK-GEHCEFSHDWKD---------------PPNNICTYYQK-GFCSYGSRCRYEHVKPSRSES   61 (286)
Q Consensus         3 k~~~C~~f~-~G~C~~-G~~C~f~H~~~~---------------~~~~~C~~f~~-G~C~~G~~C~y~H~~~~~~~~   61 (286)
                      |+.+|++|. .|.|++ |++|+|.|....               .++.+|.+|++ |.|.||.+|+|.|........
T Consensus       131 kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~  207 (332)
T KOG1677|consen  131 KTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRAS  207 (332)
T ss_pred             cCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccccc
Confidence            789999888 599999 999999997542               24779999995 999999999999998765443

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1e-08  Score=86.85  Aligned_cols=49  Identities=35%  Similarity=0.830  Sum_probs=38.7

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      +.-..|+|||+.+-++-       .+-.+|||+||..||+..++..           ..||+||++.
T Consensus       129 ~~~~~CPiCl~~~sek~-------~vsTkCGHvFC~~Cik~alk~~-----------~~CP~C~kkI  177 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKV-------PVSTKCGHVFCSQCIKDALKNT-----------NKCPTCRKKI  177 (187)
T ss_pred             ccccCCCceecchhhcc-------ccccccchhHHHHHHHHHHHhC-----------CCCCCccccc
Confidence            33478999999765542       3546899999999999999765           4899999754

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=98.62  E-value=1.4e-08  Score=87.25  Aligned_cols=111  Identities=22%  Similarity=0.611  Sum_probs=67.0

Q ss_pred             ccCC-hhhhcCCCCCCCCCcccCCCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHHHHh---ccCccccccccccccc
Q 023176          131 RSIC-SFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALR---RSQEIECSVCLDRVLS  206 (286)
Q Consensus       131 ~~lC-~y~~~G~C~~Gd~C~y~Hg~~c~~c~~~~l~p~~~~~~~e~~~~~~~~~~~~~~~~---~~~~~~C~IC~e~i~~  206 (286)
                      ..+| .|-++|.|-|||.|.|+|.-.==.-| |   -+|.+=..+        .|+..++.   ...-..|+||-+. |+
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D~KtG-W---kLn~EWnA~--------~Ee~~v~~~~~e~IPF~C~iCKkd-y~  207 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSDFKTG-W---KLNQEWNAE--------YEEAPVISGPGEKIPFLCGICKKD-YE  207 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhhhhcc-c---ccchhhcch--------hhhcccccCCCCCCceeehhchhh-cc
Confidence            4679 57799999999999999965300000 0   011111110        01111111   1123579999995 77


Q ss_pred             CccccccceeecCCCCCcCcHHHH-HHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcHHHHHHHHH
Q 023176          207 KPTAAERKFGLLSECDHPFCISCI-RNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDS  280 (286)
Q Consensus       207 ~~~~~~~~~~~l~~C~H~fC~~Ci-~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~~k~~li~~  280 (286)
                      .|        |..+|||.||..|. +.+++.            ..|-+|-+..    -..+||..+  -++++.+
T Consensus       208 sp--------vvt~CGH~FC~~Cai~~y~kg------------~~C~~Cgk~t----~G~f~V~~d--~~kmL~~  256 (259)
T COG5152         208 SP--------VVTECGHSFCSLCAIRKYQKG------------DECGVCGKAT----YGRFWVVSD--LQKMLNK  256 (259)
T ss_pred             ch--------hhhhcchhHHHHHHHHHhccC------------Ccceecchhh----ccceeHHhh--HHHHHhh
Confidence            66        55589999999995 555532            3899998874    456788665  4445543

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.60  E-value=3.2e-08  Score=74.66  Aligned_cols=59  Identities=25%  Similarity=0.722  Sum_probs=41.1

Q ss_pred             cCcccccccccccccC--cc---cccc-ceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          192 SQEIECSVCLDRVLSK--PT---AAER-KFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~--~~---~~~~-~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      .+|..|+||... |+-  |+   |++. .+ ++-.|+|.|.+-||.+|.++...        ...||+||+...|
T Consensus        19 ~~dd~CgICr~~-fdg~Cp~Ck~Pgd~Cpl-v~g~C~H~FH~hCI~kWl~~~~~--------~~~CPmCR~~w~~   83 (85)
T PF12861_consen   19 ANDDVCGICRMP-FDGCCPDCKFPGDDCPL-VWGKCSHNFHMHCILKWLSTQSS--------KGQCPMCRQPWKF   83 (85)
T ss_pred             CCCCceeeEecc-cccCCCCccCCCCCCce-eeccCccHHHHHHHHHHHccccC--------CCCCCCcCCeeee
Confidence            348899999985 551  11   1222 33 34469999999999999986432        2599999998754

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.58  E-value=6.7e-08  Score=88.44  Aligned_cols=55  Identities=40%  Similarity=0.915  Sum_probs=50.5

Q ss_pred             CCccccccccccCCCCCCCCCccCCCCCC--Ccccccc-cCCCCCCCCCcccCCCCCC
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHDWKDPP--NNICTYY-QKGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~--~~~C~~f-~~G~C~~G~~C~y~H~~~~   57 (286)
                      ..++|++|+.|.|+.|..|.|+|+.+..+  ...|++| +.|.|..|..|.|.|.+|.
T Consensus       103 s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~  160 (285)
T COG5084         103 SSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPD  160 (285)
T ss_pred             CCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccCcc
Confidence            46899999999999999999999988777  8899999 6999999999999999844

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.54  E-value=6.2e-08  Score=64.48  Aligned_cols=44  Identities=39%  Similarity=1.025  Sum_probs=33.3

Q ss_pred             cccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCc
Q 023176          196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK  256 (286)
Q Consensus       196 ~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~  256 (286)
                      .|+||++.+ ++    ++++.++ .|||+||..||.++. ..          ...||+||+
T Consensus         1 ~C~~C~~~~-~~----~~~~~l~-~CgH~~C~~C~~~~~-~~----------~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKY-SE----ERRPRLT-SCGHIFCEKCLKKLK-GK----------SVKCPICRK   44 (44)
T ss_pred             CCcCcCccc-cC----CCCeEEc-ccCCHHHHHHHHhhc-CC----------CCCCcCCCC
Confidence            499999964 21    3455666 699999999999998 22          259999985

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.49  E-value=6.8e-08  Score=89.13  Aligned_cols=65  Identities=28%  Similarity=0.604  Sum_probs=49.9

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcHH
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEE  273 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~~  273 (286)
                      -+-|+||+| .|.-|       .|.| |+|+||.-|||+....+.           .||.|++.+.--     -+..+.-
T Consensus        23 lLRC~IC~e-yf~ip-------~itp-CsHtfCSlCIR~~L~~~p-----------~CP~C~~~~~Es-----~Lr~n~i   77 (442)
T KOG0287|consen   23 LLRCGICFE-YFNIP-------MITP-CSHTFCSLCIRKFLSYKP-----------QCPTCCVTVTES-----DLRNNRI   77 (442)
T ss_pred             HHHHhHHHH-HhcCc-------eecc-ccchHHHHHHHHHhccCC-----------CCCceecccchh-----hhhhhhH
Confidence            366999999 57766       5665 999999999999997653           899999987521     1334555


Q ss_pred             HHHHHHHHHh
Q 023176          274 KQEIIDSYKS  283 (286)
Q Consensus       274 k~~li~~yk~  283 (286)
                      .++||+.|+-
T Consensus        78 l~Eiv~S~~~   87 (442)
T KOG0287|consen   78 LDEIVKSLNF   87 (442)
T ss_pred             HHHHHHHHHH
Confidence            7889988864

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.47  E-value=1.7e-07  Score=69.21  Aligned_cols=68  Identities=18%  Similarity=0.316  Sum_probs=48.1

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcH
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPE  272 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~  272 (286)
                      +++.|+|+.+ |+.+|       ++++ +||+|+.++|.+|.....          .+||+++.....   . - +..+.
T Consensus         3 ~~f~CpIt~~-lM~dP-------Vi~~-~G~tyer~~I~~~l~~~~----------~~~P~t~~~l~~---~-~-l~pn~   58 (73)
T PF04564_consen    3 DEFLCPITGE-LMRDP-------VILP-SGHTYERSAIERWLEQNG----------GTDPFTRQPLSE---S-D-LIPNR   58 (73)
T ss_dssp             GGGB-TTTSS-B-SSE-------EEET-TSEEEEHHHHHHHHCTTS----------SB-TTT-SB-SG---G-G-SEE-H
T ss_pred             cccCCcCcCc-HhhCc-------eeCC-cCCEEcHHHHHHHHHcCC----------CCCCCCCCcCCc---c-c-ceECH
Confidence            5789999999 79998       7885 889999999999998632          599999887652   1 1 22345


Q ss_pred             HHHHHHHHHHhh
Q 023176          273 EKQEIIDSYKSK  284 (286)
Q Consensus       273 ~k~~li~~yk~~  284 (286)
                      .....|+.|.++
T Consensus        59 ~Lk~~I~~~~~~   70 (73)
T PF04564_consen   59 ALKSAIEEWCAE   70 (73)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            677888888764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>smart00184 RING Ring finger

Probab=98.44  E-value=1.8e-07  Score=58.86  Aligned_cols=39  Identities=51%  Similarity=1.297  Sum_probs=30.1

Q ss_pred             ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176          197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC  254 (286)
Q Consensus       197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C  254 (286)
                      |+||++. ...+       .++ .|+|.||..||..|.+..          ...||+|
T Consensus         1 C~iC~~~-~~~~-------~~~-~C~H~~c~~C~~~~~~~~----------~~~CP~C   39 (39)
T smart00184        1 CPICLEE-LKDP-------VVL-PCGHTFCRSCIRKWLKSG----------NNTCPIC   39 (39)
T ss_pred             CCcCccC-CCCc-------EEe-cCCChHHHHHHHHHHHhC----------cCCCCCC
Confidence            7899995 3333       566 599999999999999722          1479987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.7e-07  Score=87.51  Aligned_cols=58  Identities=26%  Similarity=0.762  Sum_probs=43.8

Q ss_pred             ccCcccccccccccccCcc-c----cccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          191 RSQEIECSVCLDRVLSKPT-A----AERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~-~----~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      .+.|-.|.||||.++..+. +    .+.+=--|| |||+|.+.|++.|...+|           +||+||.+..|
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQ-----------TCPICr~p~if  346 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQ-----------TCPICRRPVIF  346 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhcc-----------CCCcccCcccc
Confidence            5778999999998776541 0    011113465 999999999999998776           89999998544

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.36  E-value=2.2e-07  Score=61.55  Aligned_cols=35  Identities=31%  Similarity=0.781  Sum_probs=20.0

Q ss_pred             ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhC
Q 023176          197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS  237 (286)
Q Consensus       197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~  237 (286)
                      |+||.| . ..+   +..=.+|+ |||+||.+||.+|.+..
T Consensus         1 CpIc~e-~-~~~---~n~P~~L~-CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-F-STE---ENPPMVLP-CGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT------TT---SS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-c-cCC---CCCCEEEe-CccHHHHHHHHHHHhcC
Confidence            899999 4 331   11115675 99999999999999865

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=4e-07  Score=81.68  Aligned_cols=68  Identities=24%  Similarity=0.596  Sum_probs=51.5

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY  269 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~  269 (286)
                      ...++++|+||++ .+..|       .+| .|+|+||..||..|+. .          ...||.||. ...      ++.
T Consensus         9 ~~~~~~~C~iC~~-~~~~p-------~~l-~C~H~~c~~C~~~~~~-~----------~~~Cp~cr~-~~~------~~~   61 (386)
T KOG2177|consen    9 VLQEELTCPICLE-YFREP-------VLL-PCGHNFCRACLTRSWE-G----------PLSCPVCRP-PSR------NLR   61 (386)
T ss_pred             hccccccChhhHH-HhhcC-------ccc-cccchHhHHHHHHhcC-C----------CcCCcccCC-chh------ccC
Confidence            4567899999999 57776       677 4999999999999887 1          259999994 211      455


Q ss_pred             CcHHHHHHHHHHHhh
Q 023176          270 TPEEKQEIIDSYKSK  284 (286)
Q Consensus       270 ~~~~k~~li~~yk~~  284 (286)
                      .+.....|++.|+..
T Consensus        62 ~n~~l~~~~~~~~~~   76 (386)
T KOG2177|consen   62 PNVLLANLVERLRQL   76 (386)
T ss_pred             ccHHHHHHHHHHHhc
Confidence            667777788887653

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.9e-07  Score=86.34  Aligned_cols=52  Identities=29%  Similarity=0.772  Sum_probs=41.6

Q ss_pred             ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      .+|.||||. |++-    .+..+|| |+|.|...||..|.....          ..||+|+.......
T Consensus       230 ~~CaIClEd-Y~~G----dklRiLP-C~H~FH~~CIDpWL~~~r----------~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  230 DTCAICLED-YEKG----DKLRILP-CSHKFHVNCIDPWLTQTR----------TFCPVCKRDIRTDS  281 (348)
T ss_pred             ceEEEeecc-cccC----CeeeEec-CCCchhhccchhhHhhcC----------ccCCCCCCcCCCCC
Confidence            499999996 6653    4668896 999999999999997642          47999999765433

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.5e-07  Score=83.01  Aligned_cols=48  Identities=31%  Similarity=0.853  Sum_probs=37.7

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHH-HHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~-w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      ..|-.|.||+|. .++|       ..+ .|||+||..||.. |-+.+-          --||+||..+
T Consensus       213 ~~d~kC~lC~e~-~~~p-------s~t-~CgHlFC~~Cl~~~~t~~k~----------~~CplCRak~  261 (271)
T COG5574         213 LADYKCFLCLEE-PEVP-------SCT-PCGHLFCLSCLLISWTKKKY----------EFCPLCRAKV  261 (271)
T ss_pred             ccccceeeeecc-cCCc-------ccc-cccchhhHHHHHHHHHhhcc----------ccCchhhhhc
Confidence            446779999994 6666       556 4999999999998 876542          3699999975

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=4e-07  Score=83.04  Aligned_cols=55  Identities=29%  Similarity=0.877  Sum_probs=44.4

Q ss_pred             HHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          188 ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       188 ~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      +.+.....+|.|||+.+. |.    .++.+|| |+|.|...||.+|+-.-          ...||.||...
T Consensus       317 ~~ea~~GveCaICms~fi-K~----d~~~vlP-C~H~FH~~Cv~kW~~~y----------~~~CPvCrt~i  371 (374)
T COG5540         317 AVEADKGVECAICMSNFI-KN----DRLRVLP-CDHRFHVGCVDKWLLGY----------SNKCPVCRTAI  371 (374)
T ss_pred             HHhcCCCceEEEEhhhhc-cc----ceEEEec-cCceechhHHHHHHhhh----------cccCCccCCCC
Confidence            456677899999999754 43    4588996 99999999999999742          14899999874

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.26  E-value=2.7e-07  Score=65.79  Aligned_cols=44  Identities=41%  Similarity=1.053  Sum_probs=22.6

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      -+.|+||.+ ++.+|       +.|.+|.|+||..||+.-..             ..||+|+++.
T Consensus         7 lLrCs~C~~-~l~~p-------v~l~~CeH~fCs~Ci~~~~~-------------~~CPvC~~Pa   50 (65)
T PF14835_consen    7 LLRCSICFD-ILKEP-------VCLGGCEHIFCSSCIRDCIG-------------SECPVCHTPA   50 (65)
T ss_dssp             TTS-SSS-S---SS--------B---SSS--B-TTTGGGGTT-------------TB-SSS--B-
T ss_pred             hcCCcHHHH-HhcCC-------ceeccCccHHHHHHhHHhcC-------------CCCCCcCChH
Confidence            356999999 78888       78889999999999965321             2599999874

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.26  E-value=1.3e-06  Score=80.89  Aligned_cols=53  Identities=23%  Similarity=0.519  Sum_probs=39.7

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ++..|+||....+-.|   .-+|.+. .|||.||.+||...+....          ..||+|+..+.
T Consensus         2 d~~~CP~Ck~~~y~np---~~kl~i~-~CGH~~C~sCv~~l~~~~~----------~~CP~C~~~lr   54 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNP---SLKLMVN-VCGHTLCESCVDLLFVRGS----------GSCPECDTPLR   54 (309)
T ss_pred             CCCCCCcCCCCCccCc---ccccccC-CCCCcccHHHHHHHhcCCC----------CCCCCCCCccc
Confidence            4578999999877766   2344444 6999999999998553321          38999999875

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=98.25  E-value=6.7e-07  Score=83.59  Aligned_cols=51  Identities=25%  Similarity=0.642  Sum_probs=44.5

Q ss_pred             cccccccc--ccCCCCCCCCCccCCC--CCCCcccccccCCCCCCCCCcccCCCC
Q 023176            5 VLCKFFAH--GACLKGEHCEFSHDWK--DPPNNICTYYQKGFCSYGSRCRYEHVK   55 (286)
Q Consensus         5 ~~C~~f~~--G~C~~G~~C~f~H~~~--~~~~~~C~~f~~G~C~~G~~C~y~H~~   55 (286)
                      ..|.++..  -.|.+|..|...|...  ..+..+|+||+.|.|..||.|-|+|..
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vcK~~l~glC~kgD~C~Flhe~  100 (325)
T KOG1040|consen   46 ATCEFNESREKPCERGPICPKSHNDVSDSRGKVVCKHWLRGLCKKGDQCEFLHEY  100 (325)
T ss_pred             chhcccccCCCCccCCCCCccccCCccccCCceeehhhhhhhhhccCcCcchhhh
Confidence            56776665  6799999999999863  677899999999999999999999987

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=98.24  E-value=1.7e-07  Score=85.05  Aligned_cols=57  Identities=39%  Similarity=0.966  Sum_probs=47.1

Q ss_pred             CCccccccccccCCCCCCCCCccCCCC------------CCC------------------------cccccccC----C-
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHDWKD------------PPN------------------------NICTYYQK----G-   41 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~~~~------------~~~------------------------~~C~~f~~----G-   41 (286)
                      |+++|-||.+|.|..|+.|+|+|++..            .+.                        .||+||+.    | 
T Consensus        91 KSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~k  170 (343)
T KOG1763|consen   91 KSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENGK  170 (343)
T ss_pred             hHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCC
Confidence            789999999999999999999999762            112                        28999983    2 


Q ss_pred             -----CCCCCC-CcccCCCCCCCC
Q 023176           42 -----FCSYGS-RCRYEHVKPSRS   59 (286)
Q Consensus        42 -----~C~~G~-~C~y~H~~~~~~   59 (286)
                           .|++|. .|.|.|..|+..
T Consensus       171 YGWfW~CPnGg~~C~YrHaLP~Gy  194 (343)
T KOG1763|consen  171 YGWFWECPNGGDKCIYRHALPEGY  194 (343)
T ss_pred             ccceeECCCCCCeeeeeecCCcch
Confidence                 499986 799999998754

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.22  E-value=2.6e-07  Score=55.15  Aligned_cols=24  Identities=46%  Similarity=1.144  Sum_probs=16.7

Q ss_pred             CCcccccccc-ccCCCCCCCCCccC
Q 023176            3 KRVLCKFFAH-GACLKGEHCEFSHD   26 (286)
Q Consensus         3 k~~~C~~f~~-G~C~~G~~C~f~H~   26 (286)
                      |+.+|++|++ |.|++|++|+|+|+
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             ccccChhhccCCccCCCCCcCccCC
Confidence            5678887776 88888888888886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=5.3e-07  Score=61.94  Aligned_cols=51  Identities=31%  Similarity=0.675  Sum_probs=36.3

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCc-CcHHHH-HHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCI-RNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci-~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      +-+.+|.||+|...+.         +|-.|||. .|++|- +.|+..+           ..||+||.+..-||
T Consensus         5 ~~~dECTICye~pvds---------VlYtCGHMCmCy~Cg~rl~~~~~-----------g~CPiCRapi~dvI   57 (62)
T KOG4172|consen    5 QWSDECTICYEHPVDS---------VLYTCGHMCMCYACGLRLKKALH-----------GCCPICRAPIKDVI   57 (62)
T ss_pred             ccccceeeeccCcchH---------HHHHcchHHhHHHHHHHHHHccC-----------CcCcchhhHHHHHH
Confidence            3458899999976552         44469996 699995 5666432           48999999865443

>smart00356 ZnF_C3H1 zinc finger

Probab=98.09  E-value=2e-06  Score=50.78  Aligned_cols=24  Identities=50%  Similarity=1.131  Sum_probs=19.0

Q ss_pred             CCccccccccccCCCCCCCCCccC
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHD   26 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~   26 (286)
                      |..+|++|++|.|.+|++|+|+|+
T Consensus         3 k~~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        3 KTELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCcCcCccCCCCCCCCCcCCCCc
Confidence            556788888888888888888886

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.6e-06  Score=86.84  Aligned_cols=52  Identities=31%  Similarity=0.674  Sum_probs=39.2

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK  256 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~  256 (286)
                      ....+..|.||+|.+..-+   +..-..|+ |+|+|+..||++|....+           +||+||.
T Consensus       287 ~~~~~~~C~IC~e~l~~~~---~~~~~rL~-C~Hifh~~CL~~W~er~q-----------tCP~CR~  338 (543)
T KOG0802|consen  287 LALSDELCIICLEELHSGH---NITPKRLP-CGHIFHDSCLRSWFERQQ-----------TCPTCRT  338 (543)
T ss_pred             hhhcCCeeeeechhhcccc---ccccceee-cccchHHHHHHHHHHHhC-----------cCCcchh
Confidence            4455889999999654421   00014675 999999999999998754           9999999

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=1.4e-06  Score=79.33  Aligned_cols=102  Identities=21%  Similarity=0.502  Sum_probs=62.3

Q ss_pred             ccCCh-hhhcCCCCCCCCCcccCCCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHHHHhccCc---cccccccccccc
Q 023176          131 RSICS-FAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQE---IECSVCLDRVLS  206 (286)
Q Consensus       131 ~~lC~-y~~~G~C~~Gd~C~y~Hg~~c~~c~~~~l~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~---~~C~IC~e~i~~  206 (286)
                      ..+|. |-.+|.|.|||.|.|+|--.+=--|=+ |+   .+ +.+..       +.-.......+   ..|.||-+. |.
T Consensus       186 pDicKdykeTgycg~gdSckFlh~r~DyK~GWq-i~---~e-~d~~k-------e~~~~~~~D~~~~Pf~c~icr~~-f~  252 (313)
T KOG1813|consen  186 PDICKDYKETGYCGYGDSCKFLHDRSDYKAGWQ-IE---FE-WDSAK-------EKKRVKIEDIELLPFKCFICRKY-FY  252 (313)
T ss_pred             chhhhhhHhhCcccccchhhhhhhhhhccccce-ee---hh-hhccc-------cccceecCCcccCCccccccccc-cc
Confidence            46795 669999999999999997764222211 11   11 11010       11111111222   459999996 55


Q ss_pred             CccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceee
Q 023176          207 KPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY  268 (286)
Q Consensus       207 ~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~  268 (286)
                      .|        |.+.|+|.||..|-.+-.+..           ..|++|-+...    +.+|+
T Consensus       253 ~p--------Vvt~c~h~fc~~ca~~~~qk~-----------~~c~vC~~~t~----g~~~~  291 (313)
T KOG1813|consen  253 RP--------VVTKCGHYFCEVCALKPYQKG-----------EKCYVCSQQTH----GSFNV  291 (313)
T ss_pred             cc--------hhhcCCceeehhhhccccccC-----------Ccceecccccc----cccch
Confidence            55        555799999999976655432           38999988754    45555

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.03  E-value=3.3e-06  Score=76.72  Aligned_cols=65  Identities=31%  Similarity=0.631  Sum_probs=48.1

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcHH
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEE  273 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~~  273 (286)
                      -+-|-||-+. +.-|        ++..|||.||.-||+.....+.           -||+||..+.++.     +....-
T Consensus        25 ~lrC~IC~~~-i~ip--------~~TtCgHtFCslCIR~hL~~qp-----------~CP~Cr~~~~esr-----lr~~s~   79 (391)
T COG5432          25 MLRCRICDCR-ISIP--------CETTCGHTFCSLCIRRHLGTQP-----------FCPVCREDPCESR-----LRGSSG   79 (391)
T ss_pred             HHHhhhhhhe-eecc--------eecccccchhHHHHHHHhcCCC-----------CCccccccHHhhh-----cccchh
Confidence            3669999995 4444        5556999999999999997653           7999999887543     223344


Q ss_pred             HHHHHHHHHh
Q 023176          274 KQEIIDSYKS  283 (286)
Q Consensus       274 k~~li~~yk~  283 (286)
                      -++||+.|+.
T Consensus        80 ~~ei~es~~~   89 (391)
T COG5432          80 SREINESHAR   89 (391)
T ss_pred             HHHHHHhhhh
Confidence            6678888764

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.96  E-value=3e-06  Score=50.48  Aligned_cols=25  Identities=40%  Similarity=1.062  Sum_probs=18.1

Q ss_pred             CccCChhh-hcCCCCCCCCCcccCCC
Q 023176          130 DRSICSFA-AAGNCPRGEKCPHIHGD  154 (286)
Q Consensus       130 ~~~lC~y~-~~G~C~~Gd~C~y~Hg~  154 (286)
                      ++.+|++| +.|.|++|++|+|+|+.
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             ccccChhhccCCccCCCCCcCccCCC
Confidence            46789866 66999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=1.1e-05  Score=77.55  Aligned_cols=25  Identities=8%  Similarity=-0.130  Sum_probs=22.3

Q ss_pred             cCChhhhcCCCCCCCCCcccCCCCC
Q 023176          132 SICSFAAAGNCPRGEKCPHIHGDTC  156 (286)
Q Consensus       132 ~lC~y~~~G~C~~Gd~C~y~Hg~~c  156 (286)
                      ..|-++++|.|-.||-|-|+|+-..
T Consensus       119 ~P~l~~~K~~e~~~D~~s~Lh~P~A  143 (667)
T KOG4791|consen  119 SPQLRSVKKVESSEDVPSPLHPPVA  143 (667)
T ss_pred             chHHHHhhhhhhhccccccCCCCcc
Confidence            4589999999999999999999864

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.82  E-value=1.2e-05  Score=59.56  Aligned_cols=55  Identities=22%  Similarity=0.525  Sum_probs=38.6

Q ss_pred             ccccccccccccCc--------cccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176          195 IECSVCLDRVLSKP--------TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV  261 (286)
Q Consensus       195 ~~C~IC~e~i~~~~--------~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~  261 (286)
                      ..|+||...|++.=        +..|-..+.- -|+|.|..-||.+|.+++           ..||++|+.+.+-
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG-~CnHaFH~HCI~rWL~Tk-----------~~CPld~q~w~~~   83 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWG-VCNHAFHDHCIYRWLDTK-----------GVCPLDRQTWVLA   83 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEE-ecchHHHHHHHHHHHhhC-----------CCCCCCCceeEEe
Confidence            56888887665421        1122232333 499999999999999875           3899999987653

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=97.80  E-value=7.2e-06  Score=75.72  Aligned_cols=25  Identities=28%  Similarity=0.800  Sum_probs=22.9

Q ss_pred             CcccccccCCCCCCCCC-cccCCCCC
Q 023176           32 NNICTYYQKGFCSYGSR-CRYEHVKP   56 (286)
Q Consensus        32 ~~~C~~f~~G~C~~G~~-C~y~H~~~   56 (286)
                      ..|||.||+|.|..||+ |+|.|...
T Consensus        37 ~eVCReF~rn~C~R~d~~CkfaHP~~   62 (331)
T KOG2494|consen   37 LEVCREFLRNTCSRGDRECKFAHPPK   62 (331)
T ss_pred             HHHHHHHHhccccCCCccccccCCCC
Confidence            46899999999999999 99999874

>smart00356 ZnF_C3H1 zinc finger

Probab=97.78  E-value=1.8e-05  Score=46.65  Aligned_cols=25  Identities=32%  Similarity=1.254  Sum_probs=22.5

Q ss_pred             CCcccccccCCCCCCCCCcccCCCC
Q 023176           31 PNNICTYYQKGFCSYGSRCRYEHVK   55 (286)
Q Consensus        31 ~~~~C~~f~~G~C~~G~~C~y~H~~   55 (286)
                      +..+|++|++|.|.+|++|+|+|..
T Consensus         3 k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        3 KTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCcCcCccCCCCCCCCCcCCCCcC
Confidence            4678999999999999999999973

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.77  E-value=6.3e-06  Score=60.41  Aligned_cols=65  Identities=22%  Similarity=0.464  Sum_probs=27.1

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      +.+|+||++.+++... .....=--+.|+..|...||.+|..........-..+...||.|+.+..
T Consensus         2 ~~~C~IC~~~~~~~~~-~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGE-IPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCC-cCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            6789999997663211 1111112247999999999999988632211112234468999998764

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=6.3e-06  Score=79.30  Aligned_cols=52  Identities=35%  Similarity=0.743  Sum_probs=43.4

Q ss_pred             ccccccccccCCCCCCCCCccCCCC-CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176            5 VLCKFFAHGACLKGEHCEFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus         5 ~~C~~f~~G~C~~G~~C~f~H~~~~-~~~~~C~~f~~G~C~~G~~C~y~H~~~~   57 (286)
                      ..|.||+.-.|++|+.|.|+|..+. .+..+|++|+.+.|- .+.|+|.|+.-.
T Consensus         4 ~dcyff~ys~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C-~k~C~YRHSe~~   56 (667)
T KOG4791|consen    4 EDCYFFFYSTCKKGDSCPFRHCEAALGNETVCTLWQEGRCC-RKVCRYRHSEID   56 (667)
T ss_pred             ccchhhhhhhhhccCcCcchhhHHHhcCcchhhhhhhcCcc-cccccchhhHHh
Confidence            4689999999999999999998654 457889999987655 459999999844

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=5.1e-06  Score=77.41  Aligned_cols=50  Identities=36%  Similarity=0.763  Sum_probs=39.4

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      -.++.|+|||+ |+.+.       .+...|.|-||.+||.+-.....          ..||.||+...
T Consensus        41 ~~~v~c~icl~-llk~t-------mttkeClhrfc~~ci~~a~r~gn----------~ecptcRk~l~   90 (381)
T KOG0311|consen   41 DIQVICPICLS-LLKKT-------MTTKECLHRFCFDCIWKALRSGN----------NECPTCRKKLV   90 (381)
T ss_pred             hhhhccHHHHH-HHHhh-------cccHHHHHHHHHHHHHHHHHhcC----------CCCchHHhhcc
Confidence            34788999999 66665       56668999999999987665443          59999999753

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=97.55  E-value=0.0001  Score=67.54  Aligned_cols=55  Identities=33%  Similarity=0.838  Sum_probs=46.6

Q ss_pred             ccccccc-cccCCC---CCCCCCc---cCCCC---------CCCccccccc-CCCCCCCCCcccCCCCCCCC
Q 023176            5 VLCKFFA-HGACLK---GEHCEFS---HDWKD---------PPNNICTYYQ-KGFCSYGSRCRYEHVKPSRS   59 (286)
Q Consensus         5 ~~C~~f~-~G~C~~---G~~C~f~---H~~~~---------~~~~~C~~f~-~G~C~~G~~C~y~H~~~~~~   59 (286)
                      .+|.-|. .|.|..   |+.|.|+   |.+..         .++..|.-|+ -|.|.||.+|.|.|......
T Consensus       231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~i  302 (351)
T COG5063         231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDI  302 (351)
T ss_pred             HHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhc
Confidence            7898666 699999   9999999   98764         3578899999 59999999999999986543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=3.7e-05  Score=77.99  Aligned_cols=47  Identities=30%  Similarity=0.752  Sum_probs=38.7

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      -+.|+.|-+..-+         ++++.|+|.||..||+.-..+++          +.||.|-..|.
T Consensus       643 ~LkCs~Cn~R~Kd---------~vI~kC~H~FC~~Cvq~r~etRq----------RKCP~Cn~aFg  689 (698)
T KOG0978|consen  643 LLKCSVCNTRWKD---------AVITKCGHVFCEECVQTRYETRQ----------RKCPKCNAAFG  689 (698)
T ss_pred             ceeCCCccCchhh---------HHHHhcchHHHHHHHHHHHHHhc----------CCCCCCCCCCC
Confidence            4789999985333         56778999999999999887776          69999988864

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.41  E-value=5.2e-05  Score=72.71  Aligned_cols=51  Identities=31%  Similarity=0.817  Sum_probs=36.6

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..+--+|+||||. ++..+  .-...+  -|+|.|...|+.+|+.             .+||+||-...
T Consensus       172 ~tELPTCpVCLER-MD~s~--~gi~t~--~c~Hsfh~~cl~~w~~-------------~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLER-MDSST--TGILTI--LCNHSFHCSCLMKWWD-------------SSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhh-cCccc--cceeee--ecccccchHHHhhccc-------------CcChhhhhhcC
Confidence            3455789999997 44321  112233  4999999999999985             38999997654

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00011  Score=70.75  Aligned_cols=73  Identities=23%  Similarity=0.513  Sum_probs=50.9

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC-
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT-  270 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~-  270 (286)
                      ..+..|.||+. ++.+|       +++ +|||.||..||.+-....           .-||.||..+.... ...-+.. 
T Consensus        82 ~sef~c~vc~~-~l~~p-------v~t-pcghs~c~~Cl~r~ld~~-----------~~cp~Cr~~l~e~~-~~~~~~~~  140 (398)
T KOG4159|consen   82 RSEFECCVCSR-ALYPP-------VVT-PCGHSFCLECLDRSLDQE-----------TECPLCRDELVELP-ALEQALSL  140 (398)
T ss_pred             cchhhhhhhHh-hcCCC-------ccc-cccccccHHHHHHHhccC-----------CCCcccccccccch-HHHHHHHH
Confidence            56899999999 46566       566 699999999998854421           48999999876411 1111222 


Q ss_pred             cHHHHHHHHHHHhhc
Q 023176          271 PEEKQEIIDSYKSKL  285 (286)
Q Consensus       271 ~~~k~~li~~yk~~~  285 (286)
                      +-.+.++|.+|.+..
T Consensus       141 ~r~~~~li~~F~~~~  155 (398)
T KOG4159|consen  141 NRLLCKLITKFLEGS  155 (398)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            556668888887653

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=8.6e-05  Score=68.01  Aligned_cols=50  Identities=30%  Similarity=0.655  Sum_probs=37.6

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      +....+|.||+.+ ..-|       +.| .|+|.||+-||.--....          .++|++||.++.
T Consensus         4 ~~~~~eC~IC~nt-~n~P-------v~l-~C~HkFCyiCiKGsy~nd----------k~~CavCR~pid   53 (324)
T KOG0824|consen    4 RTKKKECLICYNT-GNCP-------VNL-YCFHKFCYICIKGSYKND----------KKTCAVCRFPID   53 (324)
T ss_pred             cccCCcceeeecc-CCcC-------ccc-cccchhhhhhhcchhhcC----------CCCCceecCCCC
Confidence            4567899999996 4444       677 599999999997532221          258999999875

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.35  E-value=2.8e-05  Score=68.83  Aligned_cols=56  Identities=34%  Similarity=0.913  Sum_probs=46.1

Q ss_pred             CCccccccccccCCCCCCCCCccCCCC----------------------------CCCcccccccC----C------CCC
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHDWKD----------------------------PPNNICTYYQK----G------FCS   44 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~~~~----------------------------~~~~~C~~f~~----G------~C~   44 (286)
                      |+++|-.|+++.|..|+.|+|+|+...                            ....+|+||+.    |      .|+
T Consensus        84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~CP  163 (299)
T COG5252          84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTCP  163 (299)
T ss_pred             hhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeCC
Confidence            788999999999999999999998541                            02358999973    3      499


Q ss_pred             CC-CCcccCCCCCCC
Q 023176           45 YG-SRCRYEHVKPSR   58 (286)
Q Consensus        45 ~G-~~C~y~H~~~~~   58 (286)
                      +| ++|.|.|..|..
T Consensus       164 ng~~~C~y~H~Lp~G  178 (299)
T COG5252         164 NGNMRCSYIHKLPDG  178 (299)
T ss_pred             CCCceeeeeeccCcc
Confidence            98 679999999874

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=97.34  E-value=0.00048  Score=63.34  Aligned_cols=54  Identities=31%  Similarity=0.741  Sum_probs=49.2

Q ss_pred             Ccccccc-ccccCCCCCCCCCccCCCCCCCccccccc---CCCCCCCCCcccCCCCCC
Q 023176            4 RVLCKFF-AHGACLKGEHCEFSHDWKDPPNNICTYYQ---KGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus         4 ~~~C~~f-~~G~C~~G~~C~f~H~~~~~~~~~C~~f~---~G~C~~G~~C~y~H~~~~   57 (286)
                      ...|++| +.|.|..|..|.|.|...+.....|.+|.   .|+|.+|..|++.|....
T Consensus       134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~  191 (285)
T COG5084         134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLGASCKFSHTLKR  191 (285)
T ss_pred             CCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCCCcccccccccc
Confidence            5689999 79999999999999987777889999999   699999999999999853

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.29  E-value=0.00091  Score=65.68  Aligned_cols=57  Identities=23%  Similarity=0.563  Sum_probs=48.4

Q ss_pred             CccccccccccCCCCCCCCCccCCCC-------CCCcccccccCCCCCCCCCcccCCCCCCCCCccc
Q 023176            4 RVLCKFFAHGACLKGEHCEFSHDWKD-------PPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAA   63 (286)
Q Consensus         4 ~~~C~~f~~G~C~~G~~C~f~H~~~~-------~~~~~C~~f~~G~C~~G~~C~y~H~~~~~~~~~~   63 (286)
                      -++|.-|.+|.|++||.|.|.|..-.       ++++.|++=  |.|.. .-|.|+|....+....+
T Consensus       236 ~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg--~~C~R-rvCfFAH~~eqLR~l~~  299 (528)
T KOG1595|consen  236 STPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDG--GYCPR-RVCFFAHSPEQLRPLPP  299 (528)
T ss_pred             CccCcccccCCCCCCCccccccceehhhcCHHHhccccccCC--CCCcc-ceEeeecChHHhcccCC
Confidence            57899999999999999999998553       688999986  99994 88999999988765554

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.13  E-value=0.0002  Score=66.42  Aligned_cols=59  Identities=27%  Similarity=0.580  Sum_probs=45.8

Q ss_pred             HhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCce
Q 023176          189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI  266 (286)
Q Consensus       189 ~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~  266 (286)
                      .+.....+|.+|-..+ .++       .+++.|-|+||.+||.+.....           +.||.|........|..+
T Consensus        10 ~~~n~~itC~LC~GYl-iDA-------TTI~eCLHTFCkSCivk~l~~~-----------~~CP~C~i~ih~t~pl~n   68 (331)
T KOG2660|consen   10 TELNPHITCRLCGGYL-IDA-------TTITECLHTFCKSCIVKYLEES-----------KYCPTCDIVIHKTHPLLN   68 (331)
T ss_pred             hhcccceehhhcccee-ecc-------hhHHHHHHHHHHHHHHHHHHHh-----------ccCCccceeccCcccccc
Confidence            3556689999999964 455       3566899999999999888653           599999998876655544

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.03  E-value=0.00025  Score=72.08  Aligned_cols=70  Identities=23%  Similarity=0.390  Sum_probs=48.7

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCce-----ee
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI-----WY  268 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~-----~~  268 (286)
                      ...|+||+-...+.-      -+.-..|+|.||..||..|-...+           +||+||..|..|++..+     ||
T Consensus       123 ~~~CP~Ci~s~~DqL------~~~~k~c~H~FC~~Ci~sWsR~aq-----------TCPiDR~EF~~v~V~eS~~~~~~v  185 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQL------EESEKHTAHYFCEECVGSWSRCAQ-----------TCPVDRGEFGEVKVLESTGIEANV  185 (1134)
T ss_pred             hhhhhHHHHHHHHHh------hccccccccccHHHHhhhhhhhcc-----------cCchhhhhhheeeeecccccccee
Confidence            345999998644422      133336999999999999987654           99999999998887654     22


Q ss_pred             --CCcHHHHHHHHH
Q 023176          269 --YTPEEKQEIIDS  280 (286)
Q Consensus       269 --~~~~~k~~li~~  280 (286)
                        ..-+|++.+++.
T Consensus       186 R~lP~EEs~~~~e~  199 (1134)
T KOG0825|consen  186 RCLPSEESENILEK  199 (1134)
T ss_pred             Eecchhhhhhhhhh
Confidence              223566665553

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.98  E-value=0.00046  Score=48.52  Aligned_cols=47  Identities=19%  Similarity=0.494  Sum_probs=31.2

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccC
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI  253 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~  253 (286)
                      ....+..|+|-+. ++++|       +.-..|+|+|-.+-|.+|.+.+.         ...||+
T Consensus         7 ~~~~~~~CPiT~~-~~~~P-------V~s~~C~H~fek~aI~~~i~~~~---------~~~CPv   53 (57)
T PF11789_consen    7 GGTISLKCPITLQ-PFEDP-------VKSKKCGHTFEKEAILQYIQRNG---------SKRCPV   53 (57)
T ss_dssp             SSB--SB-TTTSS-B-SSE-------EEESSS--EEEHHHHHHHCTTTS----------EE-SC
T ss_pred             ccEeccCCCCcCC-hhhCC-------cCcCCCCCeecHHHHHHHHHhcC---------CCCCCC
Confidence            3456789999999 68888       66668999999999999994332         368998

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=96.97  E-value=0.00061  Score=66.87  Aligned_cols=52  Identities=27%  Similarity=0.495  Sum_probs=40.8

Q ss_pred             CCccccccccccCCCCCCCCCccC-CCC---------CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHD-WKD---------PPNNICTYYQKGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~-~~~---------~~~~~C~~f~~G~C~~G~~C~y~H~~~~   57 (286)
                      |+..|.   ++.|.-+-.|+|.|. .++         +....|.-|.+|.|..||.|-|.|...+
T Consensus       200 Kir~C~---R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfE  261 (528)
T KOG1595|consen  200 KIRRCS---RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFE  261 (528)
T ss_pred             eecccC---CccCCCcccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceeh
Confidence            555554   347888899999994 332         2356899999999999999999999854

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.00045  Score=53.71  Aligned_cols=31  Identities=32%  Similarity=0.808  Sum_probs=26.4

Q ss_pred             CCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          219 SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       219 ~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      -.|+|.|.+-||.+|.++++           .||+|.+.-.|
T Consensus        79 G~CNHaFH~hCisrWlktr~-----------vCPLdn~eW~~  109 (114)
T KOG2930|consen   79 GVCNHAFHFHCISRWLKTRN-----------VCPLDNKEWVF  109 (114)
T ss_pred             eecchHHHHHHHHHHHhhcC-----------cCCCcCcceeE
Confidence            36999999999999999875           89999876543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.0004  Score=65.67  Aligned_cols=51  Identities=31%  Similarity=0.878  Sum_probs=38.6

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL  257 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~  257 (286)
                      ...|.||-| .+.    ..+-.+-+..|||+|...|+.+|......        .+.||+||..
T Consensus         4 ~A~C~Ic~d-~~p----~~~~l~~i~~cGhifh~~cl~qwfe~~Ps--------~R~cpic~ik   54 (465)
T KOG0827|consen    4 MAECHICID-GRP----NDHELGPIGTCGHIFHTTCLTQWFEGDPS--------NRGCPICQIK   54 (465)
T ss_pred             cceeeEecc-CCc----cccccccccchhhHHHHHHHHHHHccCCc--------cCCCCceeec
Confidence            467999966 442    34566777679999999999999976432        2799999943

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.00021  Score=52.58  Aligned_cols=57  Identities=23%  Similarity=0.630  Sum_probs=37.4

Q ss_pred             cccccccccccccCcc-----cc-ccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          194 EIECSVCLDRVLSKPT-----AA-ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~-----~~-~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      +.+|+||.-. |+-.=     |+ +-.+ ++--|.|.|..-||.+|...+...        ..||+||+.+.+
T Consensus        20 ~e~CGiCRm~-Fdg~Cp~Ck~PgDdCPL-v~G~C~h~fh~hCI~~wl~~~tsq--------~~CPmcRq~~~~   82 (84)
T KOG1493|consen   20 DETCGICRMP-FDGCCPDCKLPGDDCPL-VWGYCLHAFHAHCILKWLNTPTSQ--------GQCPMCRQTWQF   82 (84)
T ss_pred             CCccceEecc-cCCcCCCCcCCCCCCcc-HHHHHHHHHHHHHHHHHhcCcccc--------ccCCcchheeEe
Confidence            3478888763 43110     11 1122 333599999999999999875432        499999998764

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=96.80  E-value=0.00078  Score=36.74  Aligned_cols=19  Identities=47%  Similarity=1.099  Sum_probs=13.8

Q ss_pred             cccccccccCCCCCCCCCccC
Q 023176            6 LCKFFAHGACLKGEHCEFSHD   26 (286)
Q Consensus         6 ~C~~f~~G~C~~G~~C~f~H~   26 (286)
                      +|+||.+  |++|++|.|+|.
T Consensus         1 ~Ck~~~~--C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC--CCCCCcCccCCc
Confidence            4777766  887778888773

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.001  Score=62.49  Aligned_cols=49  Identities=31%  Similarity=0.725  Sum_probs=38.5

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      ....+|.|||...-+-        .+|| |.|. .|.+|-...|-..           ..||+||..+..
T Consensus       288 ~~gkeCVIClse~rdt--------~vLP-CRHLCLCs~Ca~~Lr~q~-----------n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDT--------VVLP-CRHLCLCSGCAKSLRYQT-----------NNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcce--------EEec-chhhehhHhHHHHHHHhh-----------cCCCccccchHh
Confidence            3368999999974432        7886 9995 7999999998433           489999998763

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.68  E-value=0.00079  Score=65.00  Aligned_cols=49  Identities=31%  Similarity=0.863  Sum_probs=39.9

Q ss_pred             ccCcccccccccccccCccccccceeec-CCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLL-SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l-~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..+++.|+||+. ++.+|        +. ..|||.||..||.+|....           -.||.||....
T Consensus        18 ~~~~l~C~~C~~-vl~~p--------~~~~~cgh~fC~~C~~~~~~~~-----------~~cp~~~~~~~   67 (391)
T KOG0297|consen   18 LDENLLCPICMS-VLRDP--------VQTTTCGHRFCAGCLLESLSNH-----------QKCPVCRQELT   67 (391)
T ss_pred             CcccccCccccc-cccCC--------CCCCCCCCcccccccchhhccC-----------cCCcccccccc
Confidence            456799999999 56666        33 3799999999999999763           38999988764

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.64  E-value=0.0014  Score=68.13  Aligned_cols=60  Identities=28%  Similarity=0.666  Sum_probs=43.5

Q ss_pred             HHhccCccccccccccccc---CccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176          188 ALRRSQEIECSVCLDRVLS---KPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV  261 (286)
Q Consensus       188 ~~~~~~~~~C~IC~e~i~~---~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~  261 (286)
                      ..+-+...+|+||... +.   ..-|+.    .-+.|.|.|..+||-+|..+...         .+||+||..+.|+
T Consensus      1463 ~~~fsG~eECaICYsv-L~~vdr~lPsk----rC~TCknKFH~~CLyKWf~Ss~~---------s~CPlCRseitfv 1525 (1525)
T COG5219        1463 DEKFSGHEECAICYSV-LDMVDRSLPSK----RCATCKNKFHTRCLYKWFASSAR---------SNCPLCRSEITFV 1525 (1525)
T ss_pred             hhhcCCcchhhHHHHH-HHHHhccCCcc----ccchhhhhhhHHHHHHHHHhcCC---------CCCCccccccccC
Confidence            4466778999999984 44   111222    22359999999999999987653         5999999887664

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=96.61  E-value=0.0021  Score=43.73  Aligned_cols=44  Identities=23%  Similarity=0.644  Sum_probs=31.1

Q ss_pred             cccccccccccCccccccceeecCCCC-----CcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCC
Q 023176          196 ECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICR  255 (286)
Q Consensus       196 ~C~IC~e~i~~~~~~~~~~~~~l~~C~-----H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR  255 (286)
                      .|-||++. .+.    +.. -+.| |.     |.+..+|+.+|...+..         .+||+|+
T Consensus         1 ~CrIC~~~-~~~----~~~-l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~---------~~C~iC~   49 (49)
T smart00744        1 ICRICHDE-GDE----GDP-LVSP-CRCKGSLKYVHQECLERWINESGN---------KTCEICK   49 (49)
T ss_pred             CccCCCCC-CCC----CCe-eEec-cccCCchhHHHHHHHHHHHHHcCC---------CcCCCCC
Confidence            48899981 221    122 3554 85     99999999999987642         5999995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.00091  Score=65.04  Aligned_cols=54  Identities=26%  Similarity=0.685  Sum_probs=37.5

Q ss_pred             cccccccccccccCcccc---------ccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          194 EIECSVCLDRVLSKPTAA---------ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~---------~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      ...|+|||..|--.-+.+         .|.|.+. .|.|+|...|+.+|+..-          ...||.||.+.
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~t-PC~HifH~~CL~~WMd~y----------kl~CPvCR~pL  633 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLT-PCHHIFHRQCLLQWMDTY----------KLICPVCRCPL  633 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhcccccc-chHHHHHHHHHHHHHhhh----------cccCCccCCCC
Confidence            467999998653211111         1235444 599999999999999743          24899999874

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.0022  Score=61.10  Aligned_cols=53  Identities=30%  Similarity=0.753  Sum_probs=42.7

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..+|+||||. ++  ++.+.+.++| -|||.|=.+||+.|.- +        ..++.||+|..+..
T Consensus         4 g~tcpiclds-~~--~~g~hr~vsl-~cghlFgs~cie~wl~-k--------~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    4 GTTCPICLDS-YT--TAGNHRIVSL-QCGHLFGSQCIEKWLG-K--------KTKMQCPLCSGKAT   56 (463)
T ss_pred             cccCceeeee-ee--ecCceEEeee-cccccccHHHHHHHHh-h--------hhhhhCcccCChhH
Confidence            4689999996 44  3578888888 5999999999999994 2        23579999987764

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.53  E-value=0.00093  Score=63.53  Aligned_cols=26  Identities=46%  Similarity=0.893  Sum_probs=23.3

Q ss_pred             CccccccccccCCCCCCCCCccCCCC
Q 023176            4 RVLCKFFAHGACLKGEHCEFSHDWKD   29 (286)
Q Consensus         4 ~~~C~~f~~G~C~~G~~C~f~H~~~~   29 (286)
                      ..+|.||+.|.|++|.+|+|+|.+..
T Consensus       140 MkpC~ffLeg~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  140 MKPCKFFLEGRCRFGENCRFSHGLDV  165 (486)
T ss_pred             hccchHhhccccccCcccccccCccc
Confidence            46999999999999999999998664

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=96.52  E-value=0.0011  Score=64.56  Aligned_cols=56  Identities=32%  Similarity=0.813  Sum_probs=44.3

Q ss_pred             Cccccccccc---cCCCCCCCCCccCCCCC---C----Cccccccc-CCCCCCCCCcccC--CCCCCCC
Q 023176            4 RVLCKFFAHG---ACLKGEHCEFSHDWKDP---P----NNICTYYQ-KGFCSYGSRCRYE--HVKPSRS   59 (286)
Q Consensus         4 ~~~C~~f~~G---~C~~G~~C~f~H~~~~~---~----~~~C~~f~-~G~C~~G~~C~y~--H~~~~~~   59 (286)
                      ..+|.-..+|   .|.+|++|+|.||++..   +    .+-|.+|- .|+|++|-.|||+  |......
T Consensus        76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~  144 (614)
T KOG2333|consen   76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLDIEGN  144 (614)
T ss_pred             hccChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhhcccCcccc
Confidence            5689877776   69999999999997641   1    36799998 7999999999996  5554433

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.49  E-value=0.0043  Score=57.02  Aligned_cols=45  Identities=31%  Similarity=0.703  Sum_probs=37.2

Q ss_pred             ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176          195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL  257 (286)
Q Consensus       195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~  257 (286)
                      +.|+.|-. ++..|       .-.+.|+|.||-.||..-.-..+          ..||.|...
T Consensus       275 LkCplc~~-Llrnp-------~kT~cC~~~fc~eci~~al~dsD----------f~CpnC~rk  319 (427)
T COG5222         275 LKCPLCHC-LLRNP-------MKTPCCGHTFCDECIGTALLDSD----------FKCPNCSRK  319 (427)
T ss_pred             ccCcchhh-hhhCc-------ccCccccchHHHHHHhhhhhhcc----------ccCCCcccc
Confidence            89999999 67776       55579999999999998776555          489999874

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=96.47  E-value=0.0015  Score=35.61  Aligned_cols=19  Identities=37%  Similarity=1.053  Sum_probs=16.3

Q ss_pred             CChhhhcCCCCCCCCCcccCC
Q 023176          133 ICSFAAAGNCPRGEKCPHIHG  153 (286)
Q Consensus       133 lC~y~~~G~C~~Gd~C~y~Hg  153 (286)
                      .|+|+..  |.+|++|.|.||
T Consensus         1 ~Ck~~~~--C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC--CCCCCcCccCCc
Confidence            3787766  999999999997

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=96.39  E-value=0.0049  Score=56.76  Aligned_cols=29  Identities=31%  Similarity=0.726  Sum_probs=23.9

Q ss_pred             CCCccCC-hhhhcCCCCCCCCCcccCCCCC
Q 023176          128 PADRSIC-SFAAAGNCPRGEKCPHIHGDTC  156 (286)
Q Consensus       128 ~~~~~lC-~y~~~G~C~~Gd~C~y~Hg~~c  156 (286)
                      +.++..| -|-.-|.|+||.+|.|.||+.-
T Consensus       271 ~frTePcinwe~sGyc~yg~Rc~F~hgd~~  300 (351)
T COG5063         271 NFRTEPCINWEKSGYCPYGLRCCFKHGDDS  300 (351)
T ss_pred             ccccCCccchhhcccCccccccccccCChh
Confidence            3456778 5669999999999999999863

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.23  E-value=0.0023  Score=60.96  Aligned_cols=25  Identities=28%  Similarity=0.876  Sum_probs=23.0

Q ss_pred             CcccccccCCCCCCCCCcccCCCCC
Q 023176           32 NNICTYYQKGFCSYGSRCRYEHVKP   56 (286)
Q Consensus        32 ~~~C~~f~~G~C~~G~~C~y~H~~~   56 (286)
                      ..+|.||+.|.|+||.+|||+|...
T Consensus       140 MkpC~ffLeg~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen  140 MKPCKFFLEGRCRFGENCRFSHGLD  164 (486)
T ss_pred             hccchHhhccccccCcccccccCcc
Confidence            5689999999999999999999874

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.09  E-value=0.0053  Score=58.34  Aligned_cols=53  Identities=30%  Similarity=0.718  Sum_probs=41.3

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      ..++-|+.|=|.|=.|+    .++--|| |.|+|...|+.+....+.         .++||.||+.-
T Consensus       363 e~~L~Cg~CGe~~Glk~----e~LqALp-CsHIfH~rCl~e~L~~n~---------~rsCP~Crklr  415 (518)
T KOG1941|consen  363 ETELYCGLCGESIGLKN----ERLQALP-CSHIFHLRCLQEILENNG---------TRSCPNCRKLR  415 (518)
T ss_pred             HHhhhhhhhhhhhcCCc----ccccccc-hhHHHHHHHHHHHHHhCC---------CCCCccHHHHH
Confidence            44678999999877776    3455675 999999999999886543         37999999543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.006  Score=55.49  Aligned_cols=55  Identities=25%  Similarity=0.552  Sum_probs=39.6

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      .+.+.+|++|-+. -.-|      +.+. .|+|+||.-||.+-+....         -.+||.|-....-+.
T Consensus       236 ~t~~~~C~~Cg~~-PtiP------~~~~-~C~HiyCY~Ci~ts~~~~a---------sf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  236 GTSDTECPVCGEP-PTIP------HVIG-KCGHIYCYYCIATSRLWDA---------SFTCPLCGENVEPLQ  290 (298)
T ss_pred             ccCCceeeccCCC-CCCC------eeec-cccceeehhhhhhhhcchh---------hcccCccCCCCcchh
Confidence            4568999999995 3334      3555 5999999999988664322         259999988765443

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.79  E-value=0.0029  Score=68.19  Aligned_cols=84  Identities=23%  Similarity=0.509  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcC
Q 023176          170 EEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALR  249 (286)
Q Consensus       170 ~~~~e~~~~~~~~~~~~~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~  249 (286)
                      -..++|--.|+--  .-++..+..|..|-||+..-+..+.      .|-.+|+|+|.+.|.+.-..++.. |....-.-.
T Consensus      3464 vkNEE~CLPCl~C--dks~tkQD~DDmCmICFTE~L~AAP------~IqL~C~HiFHlqC~R~vLE~RW~-GPRItF~Fi 3534 (3738)
T KOG1428|consen 3464 VKNEEHCLPCLHC--DKSATKQDADDMCMICFTEALSAAP------AIQLDCSHIFHLQCCRRVLENRWL-GPRITFGFI 3534 (3738)
T ss_pred             ccchhhccccccc--ChhhhhcccCceEEEEehhhhCCCc------ceecCCccchhHHHHHHHHHhccc-CCeeEEeee
Confidence            3455555555431  1233456678999999986665432      566689999999998764443321 110111125


Q ss_pred             cccCCCccccccc
Q 023176          250 ACPICRKLSYFVI  262 (286)
Q Consensus       250 ~CP~CR~~~~~~~  262 (286)
                      +||+|..+..-++
T Consensus      3535 sCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3535 SCPICKNKINHIV 3547 (3738)
T ss_pred             ecccccchhhhHH
Confidence            9999999876444

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.78  E-value=0.0041  Score=59.24  Aligned_cols=47  Identities=30%  Similarity=0.798  Sum_probs=35.4

Q ss_pred             ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..|-||-|.  +|.       +-+..|||..|..|+..|......         -+||.||-...
T Consensus       370 eLCKICaen--dKd-------vkIEPCGHLlCt~CLa~WQ~sd~g---------q~CPFCRcEIK  416 (563)
T KOG1785|consen  370 ELCKICAEN--DKD-------VKIEPCGHLLCTSCLAAWQDSDEG---------QTCPFCRCEIK  416 (563)
T ss_pred             HHHHHhhcc--CCC-------cccccccchHHHHHHHhhcccCCC---------CCCCceeeEec
Confidence            449999994  443       344469999999999999854321         48999998775

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.57  E-value=0.013  Score=60.53  Aligned_cols=63  Identities=29%  Similarity=0.679  Sum_probs=45.2

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV  261 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~  261 (286)
                      ....-.+|.||+|.|-..    ...|.-- +|-|+|.+.||++|..+.+..+    ...-.||.|+..+..+
T Consensus       187 l~~~~yeCmIC~e~I~~t----~~~WSC~-sCYhVFHl~CI~~WArs~ek~~----~~~WrCP~Cqsv~~~~  249 (950)
T KOG1952|consen  187 LSNRKYECMICTERIKRT----APVWSCK-SCYHVFHLNCIKKWARSSEKTG----QDGWRCPACQSVSKTV  249 (950)
T ss_pred             HhcCceEEEEeeeecccc----CCceecc-hhhhhhhHHHHHHHHHHhhhcc----CccccCCcccchhccC
Confidence            334568999999987553    2455556 4999999999999998743322    2346899999766543

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.42  E-value=0.0063  Score=59.87  Aligned_cols=54  Identities=31%  Similarity=0.645  Sum_probs=40.1

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...+.+|++|-| .-++        .+.+.|-|.||..||.++...--.    ..  -.+||.|-....
T Consensus       533 nk~~~~C~lc~d-~aed--------~i~s~ChH~FCrlCi~eyv~~f~~----~~--nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  533 NKGEVECGLCHD-PAED--------YIESSCHHKFCRLCIKEYVESFME----NN--NVTCPVCHIGLS  586 (791)
T ss_pred             ccCceeecccCC-hhhh--------hHhhhhhHHHHHHHHHHHHHhhhc----cc--CCCCcccccccc
Confidence            355789999999 4655        366689999999999998865211    11  269999987654

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.78  E-value=0.028  Score=38.01  Aligned_cols=47  Identities=23%  Similarity=0.647  Sum_probs=23.0

Q ss_pred             ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      |++|++.+ +.   .++.|.-= .|++-.|+.|...-+...+          ..||-||+.+
T Consensus         1 cp~C~e~~-d~---~d~~~~PC-~Cgf~IC~~C~~~i~~~~~----------g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEEL-DE---TDKDFYPC-ECGFQICRFCYHDILENEG----------GRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B---C---CCTT--SS-TTS----HHHHHHHTTSS-----------SB-TTT--B-
T ss_pred             CCCccccc-cc---CCCccccC-cCCCcHHHHHHHHHHhccC----------CCCCCCCCCC
Confidence            78999975 32   34555455 5999999999877765322          4999999875

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.43  E-value=0.016  Score=54.65  Aligned_cols=49  Identities=33%  Similarity=0.635  Sum_probs=36.4

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP  263 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p  263 (286)
                      +....|.||++..++        +..+| |||+-|  |+.....-            ..||+||.....+++
T Consensus       303 ~~p~lcVVcl~e~~~--------~~fvp-cGh~cc--ct~cs~~l------------~~CPvCR~rI~~~~k  351 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKS--------AVFVP-CGHVCC--CTLCSKHL------------PQCPVCRQRIRLVRK  351 (355)
T ss_pred             CCCCceEEecCCccc--------eeeec-CCcEEE--chHHHhhC------------CCCchhHHHHHHHHH
Confidence            456789999997554        36775 999977  88766542            369999998765543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.26  E-value=0.024  Score=53.18  Aligned_cols=59  Identities=20%  Similarity=0.561  Sum_probs=42.6

Q ss_pred             HHHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          186 LEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       186 ~~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      +.+.+++++..|-||.+.+.         |..+..|+|-.|.-|-...|.-=.         .+.||+||+...-|+
T Consensus        53 SaddtDEen~~C~ICA~~~T---------Ys~~~PC~H~~CH~Ca~RlRALY~---------~K~C~~CrTE~e~V~  111 (493)
T COG5236          53 SADDTDEENMNCQICAGSTT---------YSARYPCGHQICHACAVRLRALYM---------QKGCPLCRTETEAVV  111 (493)
T ss_pred             cccccccccceeEEecCCce---------EEEeccCCchHHHHHHHHHHHHHh---------ccCCCccccccceEE
Confidence            34457778899999999643         344445999999999866654311         269999999887544

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.08  E-value=0.0074  Score=55.34  Aligned_cols=44  Identities=34%  Similarity=0.763  Sum_probs=31.1

Q ss_pred             cccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV  261 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~  261 (286)
                      +-.|.||||...+-        .+| .|||. -|..|-...               ..||+||+....|
T Consensus       300 ~~LC~ICmDaP~DC--------vfL-eCGHmVtCt~CGkrm---------------~eCPICRqyi~rv  344 (350)
T KOG4275|consen  300 RRLCAICMDAPRDC--------VFL-ECGHMVTCTKCGKRM---------------NECPICRQYIVRV  344 (350)
T ss_pred             HHHHHHHhcCCcce--------EEe-ecCcEEeehhhcccc---------------ccCchHHHHHHHH
Confidence            56799999965442        567 59995 477775432               3799999875443

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.95  E-value=0.019  Score=52.14  Aligned_cols=57  Identities=26%  Similarity=0.615  Sum_probs=39.9

Q ss_pred             cCcccccccccccccCcc---ccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          192 SQEIECSVCLDRVLSKPT---AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~---~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      .+|-.|.||-..+...-+   --|..| .| .|+|+|...||+-|---..         .-+||-|+++++
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty-~L-sCnHvFHEfCIrGWcivGK---------kqtCPYCKekVd  281 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTY-KL-SCNHVFHEFCIRGWCIVGK---------KQTCPYCKEKVD  281 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhhe-ee-ecccchHHHhhhhheeecC---------CCCCchHHHHhh
Confidence            557889999886554321   111233 45 4999999999999975421         249999999876

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=0.034  Score=53.35  Aligned_cols=58  Identities=26%  Similarity=0.651  Sum_probs=40.5

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      .-..|.||++.-+     +...|..|| |+|+||.+|+..+....-..+. .  ....||.+.-.+.
T Consensus       183 slf~C~ICf~e~~-----G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~-v--~~l~Cp~~~C~~~  240 (445)
T KOG1814|consen  183 SLFDCCICFEEQM-----GQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQ-V--SCLKCPDPKCGSV  240 (445)
T ss_pred             hcccceeeehhhc-----Ccceeeecc-cchHHHHHHHHHHHHHhhhcce-e--eeecCCCCCCccc
Confidence            3578999999533     235677886 9999999999998765433221 1  1358999876653

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.66  E-value=0.047  Score=52.70  Aligned_cols=59  Identities=25%  Similarity=0.578  Sum_probs=39.0

Q ss_pred             cccccccc-cccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176          194 EIECSVCL-DRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP  263 (286)
Q Consensus       194 ~~~C~IC~-e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p  263 (286)
                      ..+|+||+ +.+.     .+..|-++ .|+|-||..|..+....+..     .+....||.=+=.+.+...
T Consensus       146 ~~~C~iC~~e~~~-----~~~~f~~~-~C~H~fC~~C~k~~iev~~~-----~~~~~~C~~~~C~~~l~~~  205 (384)
T KOG1812|consen  146 KEECGICFVEDPE-----AEDMFSVL-KCGHRFCKDCVKQHIEVKLL-----SGTVIRCPHDGCESRLTLE  205 (384)
T ss_pred             cccCccCcccccc-----HhhhHHHh-cccchhhhHHhHHHhhhhhc-----cCCCccCCCCCCCccCCHH
Confidence            57899999 5322     23455555 79999999999999887643     2345688754444443333

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.58  E-value=0.13  Score=46.95  Aligned_cols=52  Identities=21%  Similarity=0.491  Sum_probs=41.5

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ......|||.... ++.    ..+|+.|-.|||+|+..+|.+-.  ..          ..||+|-++|.
T Consensus       110 ~~~~~~CPvt~~~-~~~----~~~fv~l~~cG~V~s~~alke~k--~~----------~~Cp~c~~~f~  161 (260)
T PF04641_consen  110 SEGRFICPVTGKE-FNG----KHKFVYLRPCGCVFSEKALKELK--KS----------KKCPVCGKPFT  161 (260)
T ss_pred             CCceeECCCCCcc-cCC----ceeEEEEcCCCCEeeHHHHHhhc--cc----------ccccccCCccc
Confidence            4556899999985 432    35889998999999999999985  11          37999999986

>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.53  E-value=0.063  Score=43.98  Aligned_cols=65  Identities=22%  Similarity=0.646  Sum_probs=42.3

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhh-CCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSS-SPTSGMDVNTALRACPICRKLSYFVIPSVIWYY  269 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~-~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~  269 (286)
                      ..+.+|.||+..-|.            .+|||+ |..|-...-.. .....+.++++.-.|-+||.....+..+.-|+.
T Consensus        63 ~ddatC~IC~KTKFA------------DG~GH~-C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~  128 (169)
T KOG3799|consen   63 GDDATCGICHKTKFA------------DGCGHN-CSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFY  128 (169)
T ss_pred             CcCcchhhhhhcccc------------cccCcc-cchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHH
Confidence            568999999997443            368884 45553222111 111112245667899999999988888888875

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=93.12  E-value=0.031  Score=54.78  Aligned_cols=25  Identities=36%  Similarity=0.874  Sum_probs=21.0

Q ss_pred             CcccccccCC---CCCCCCCcccCCCCC
Q 023176           32 NNICTYYQKG---FCSYGSRCRYEHVKP   56 (286)
Q Consensus        32 ~~~C~~f~~G---~C~~G~~C~y~H~~~   56 (286)
                      ..+|.-...|   .|.||++|+|.|...
T Consensus        76 n~LCPsli~g~~~~C~f~d~Crf~HDi~  103 (614)
T KOG2333|consen   76 NRLCPSLIQGDISKCSFGDNCRFVHDIE  103 (614)
T ss_pred             hccChHhhcCCCccCcccccccccccHH
Confidence            4679877766   699999999999873

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.07  E-value=0.099  Score=49.33  Aligned_cols=54  Identities=22%  Similarity=0.521  Sum_probs=41.2

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP  263 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p  263 (286)
                      ..++|..|+||.-...+.        ++. .|+|--|.+||.+..-+.           +.|=.|++....++-
T Consensus       418 p~sEd~lCpICyA~pi~A--------vf~-PC~H~SC~~CI~qHlmN~-----------k~CFfCktTv~~~~l  471 (489)
T KOG4692|consen  418 PDSEDNLCPICYAGPINA--------VFA-PCSHRSCYGCITQHLMNC-----------KRCFFCKTTVIDVIL  471 (489)
T ss_pred             CCcccccCcceecccchh--------hcc-CCCCchHHHHHHHHHhcC-----------CeeeEecceeeehhc
Confidence            458899999999864431        445 599999999999887544           479999988765443

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=93.06  E-value=0.054  Score=30.89  Aligned_cols=19  Identities=42%  Similarity=1.025  Sum_probs=9.3

Q ss_pred             cccccccc-cCCCCCCCCCcc
Q 023176            6 LCKFFAHG-ACLKGEHCEFSH   25 (286)
Q Consensus         6 ~C~~f~~G-~C~~G~~C~f~H   25 (286)
                      +|.|.+.| .|.. ++|.|.|
T Consensus         2 lC~yEl~Gg~Cnd-~~C~~QH   21 (23)
T PF10650_consen    2 LCPYELTGGVCND-PDCEFQH   21 (23)
T ss_pred             CCccccCCCeeCC-CCCCccc
Confidence            45555544 5542 4555554

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=93.00  E-value=0.03  Score=51.82  Aligned_cols=34  Identities=29%  Similarity=0.783  Sum_probs=26.2

Q ss_pred             ceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          214 KFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       214 ~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      .||.+..|.|+||++|.+.-.             .+.||.|-.++..
T Consensus       102 IYGRmIPCkHvFCl~CAr~~~-------------dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen  102 IYGRMIPCKHVFCLECARSDS-------------DKICPLCDDRVQR  135 (389)
T ss_pred             eeecccccchhhhhhhhhcCc-------------cccCcCcccHHHH
Confidence            567777899999999976432             2699999877653

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=92.95  E-value=0.035  Score=48.35  Aligned_cols=26  Identities=31%  Similarity=1.077  Sum_probs=22.7

Q ss_pred             Cccccccc-CCCCCCCCCcccCCCCCC
Q 023176           32 NNICTYYQ-KGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus        32 ~~~C~~f~-~G~C~~G~~C~y~H~~~~   57 (286)
                      ..+|+.|. +|+|-|||.|+|+|.+.+
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D  167 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSD  167 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhh
Confidence            35799887 899999999999999864

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=92.85  E-value=0.071  Score=30.41  Aligned_cols=22  Identities=27%  Similarity=0.967  Sum_probs=18.8

Q ss_pred             cccccccCC-CCCCCCCcccCCCC
Q 023176           33 NICTYYQKG-FCSYGSRCRYEHVK   55 (286)
Q Consensus        33 ~~C~~f~~G-~C~~G~~C~y~H~~   55 (286)
                      ++|.|-++| .|. .+.|.|+|.+
T Consensus         1 ~lC~yEl~Gg~Cn-d~~C~~QHfr   23 (23)
T PF10650_consen    1 PLCPYELTGGVCN-DPDCEFQHFR   23 (23)
T ss_pred             CCCccccCCCeeC-CCCCCccccC
Confidence            479999988 897 8899999963

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=92.85  E-value=0.057  Score=44.33  Aligned_cols=39  Identities=26%  Similarity=0.744  Sum_probs=27.5

Q ss_pred             cCccccccccccccc-CccccccceeecC-----CCCCcCcHHHHHHHHhh
Q 023176          192 SQEIECSVCLDRVLS-KPTAAERKFGLLS-----ECDHPFCISCIRNWRSS  236 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~-~~~~~~~~~~~l~-----~C~H~fC~~Ci~~w~~~  236 (286)
                      +...+|.||++.|.+ +-     + +.++     |=-|.||.+|+.+|...
T Consensus        24 ~~~~EC~IC~~~I~~~~G-----v-V~vt~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   24 RCTVECQICFDRIDNNDG-----V-VYVTDGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             ccCeeehhhhhhhhcCCC-----E-EEEecCCeehHHHHHHHHHHHHHHhh
Confidence            348999999999877 21     1 2232     22389999999999643

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=92.80  E-value=0.16  Score=42.76  Aligned_cols=13  Identities=38%  Similarity=0.738  Sum_probs=10.9

Q ss_pred             CcCcccCCCcccc
Q 023176          247 ALRACPICRKLSY  259 (286)
Q Consensus       247 ~~~~CP~CR~~~~  259 (286)
                      ....||+||-.+.
T Consensus        79 ~~L~CPLCRG~V~   91 (162)
T PF07800_consen   79 PELACPLCRGEVK   91 (162)
T ss_pred             ccccCccccCcee
Confidence            4679999999875

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.74  E-value=0.035  Score=49.72  Aligned_cols=46  Identities=30%  Similarity=0.853  Sum_probs=32.3

Q ss_pred             ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      +.|.-|.-.    |  +...|-++ .|.|+||..|...-..             ..||+||+....
T Consensus         4 VhCn~C~~~----~--~~~~f~LT-aC~HvfC~~C~k~~~~-------------~~C~lCkk~ir~   49 (233)
T KOG4739|consen    4 VHCNKCFRF----P--SQDPFFLT-ACRHVFCEPCLKASSP-------------DVCPLCKKSIRI   49 (233)
T ss_pred             EEecccccc----C--CCCceeee-echhhhhhhhcccCCc-------------cccccccceeee
Confidence            457777763    2  24567666 7999999999764321             289999998653

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=92.60  E-value=0.045  Score=48.89  Aligned_cols=28  Identities=25%  Similarity=0.755  Sum_probs=24.9

Q ss_pred             CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176           30 PPNNICTYYQKGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus        30 ~~~~~C~~f~~G~C~~G~~C~y~H~~~~   57 (286)
                      .++.+|..|+.+.|..|+.|.|+|....
T Consensus        83 pK~~vcalF~~~~c~kg~~ckF~h~~ee  110 (299)
T COG5252          83 PKTVVCALFLNKTCAKGDACKFAHGKEE  110 (299)
T ss_pred             chhHHHHHhccCccccCchhhhhcchHH
Confidence            4578999999999999999999999644

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=92.07  E-value=0.073  Score=36.94  Aligned_cols=46  Identities=30%  Similarity=0.593  Sum_probs=33.2

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      .+..|-.|... -.+.       .++ .|+|..|..|-.-|+.+             .||.|-+++.+
T Consensus         6 ~~~~~~~~~~~-~~~~-------~~~-pCgH~I~~~~f~~~rYn-------------gCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFV-GTKG-------TVL-PCGHLICDNCFPGERYN-------------GCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEcccc-cccc-------ccc-cccceeeccccChhhcc-------------CCCCCCCcccC
Confidence            34567777663 2332       455 59999999998888753             79999998764

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=91.99  E-value=0.071  Score=51.55  Aligned_cols=34  Identities=35%  Similarity=0.870  Sum_probs=29.1

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHH
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR  234 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~  234 (286)
                      ++++.|+||-. +|++|       .||+ |+|..|..|.+...
T Consensus         2 eeelkc~vc~~-f~~ep-------iil~-c~h~lc~~ca~~~~   35 (699)
T KOG4367|consen    2 EEELKCPVCGS-FYREP-------IILP-CSHNLCQACARNIL   35 (699)
T ss_pred             cccccCceehh-hccCc-------eEee-cccHHHHHHHHhhc
Confidence            56899999999 79998       6885 99999999987643

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.77  E-value=0.061  Score=51.04  Aligned_cols=24  Identities=33%  Similarity=0.960  Sum_probs=22.9

Q ss_pred             ccccccccccCCCCCCCCCccCCC
Q 023176            5 VLCKFFAHGACLKGEHCEFSHDWK   28 (286)
Q Consensus         5 ~~C~~f~~G~C~~G~~C~f~H~~~   28 (286)
                      .||+||..|.|++|+.|+|+|+..
T Consensus         9 tic~~~~~g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQKGNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhcccccccccceeeeeccCc
Confidence            799999999999999999999876

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=91.55  E-value=0.32  Score=46.47  Aligned_cols=96  Identities=16%  Similarity=0.315  Sum_probs=50.6

Q ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHH-hccCccccccccccccc----C----ccccccceeecCCCCCcC-----cHHH
Q 023176          164 LHPFRPEEREEHMKSCEKKQKHLEAL-RRSQEIECSVCLDRVLS----K----PTAAERKFGLLSECDHPF-----CISC  229 (286)
Q Consensus       164 l~p~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~C~IC~e~i~~----~----~~~~~~~~~~l~~C~H~f-----C~~C  229 (286)
                      +|.+-.|...+..++-+++....... ..++...|-=||...-+    |    .+..+..+.-.+.|...|     |++|
T Consensus       240 i~~tl~drF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~C  319 (358)
T PF10272_consen  240 IHQTLSDRFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLEC  319 (358)
T ss_pred             ECCCHHHHHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHH
Confidence            34444444444444433333222222 44667888889974211    0    000111112233566666     6999


Q ss_pred             HHHHHhhCCCCCCCc--CCCcCcccCCCcccc
Q 023176          230 IRNWRSSSPTSGMDV--NTALRACPICRKLSY  259 (286)
Q Consensus       230 i~~w~~~~~~~~~~~--~~~~~~CP~CR~~~~  259 (286)
                      +-+|..++|+..-.+  -...-.||+||+.|-
T Consensus       320 m~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  320 MGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             HHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            999999887533111  123469999999874

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.99  E-value=0.21  Score=46.06  Aligned_cols=54  Identities=26%  Similarity=0.624  Sum_probs=37.7

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      -..|.||-+. |+.-+. ++.=.+| .|||+||..|+........          ..||.||.....
T Consensus         3 ~~~c~~c~~~-~s~~~~-~~~p~~l-~c~h~~c~~c~~~l~~~~~----------i~cpfcR~~~~~   56 (296)
T KOG4185|consen    3 FPECEICNED-YSSEDG-DHIPRVL-KCGHTICQNCASKLLGNSR----------ILCPFCRETTEI   56 (296)
T ss_pred             CCceeecCcc-ccccCc-ccCCccc-ccCceehHhHHHHHhcCce----------eeccCCCCcccC
Confidence            3679999995 443322 2222355 4999999999998876532          478999998743

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.99  E-value=0.19  Score=45.29  Aligned_cols=55  Identities=18%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             HhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       189 ~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      +..++-..|+||.+.+.+ .+    ..++|..|||+||.+|..+.+.. +          +.||+|-.+..
T Consensus       216 ~a~s~ryiCpvtrd~LtN-t~----~ca~Lr~sg~Vv~~ecvEklir~-D----------~v~pv~d~plk  270 (303)
T KOG3039|consen  216 IAASKRYICPVTRDTLTN-TT----PCAVLRPSGHVVTKECVEKLIRK-D----------MVDPVTDKPLK  270 (303)
T ss_pred             hhhccceecccchhhhcC-cc----ceEEeccCCcEeeHHHHHHhccc-c----------ccccCCCCcCc
Confidence            345567899999996554 32    55888899999999999998853 2          58999988764

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=90.92  E-value=0.3  Score=44.98  Aligned_cols=50  Identities=28%  Similarity=0.626  Sum_probs=39.8

Q ss_pred             cccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       196 ~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      .|++|-..+|-.|.    .+.++..|+|..|-+|........+          ..||.|-+...
T Consensus         2 ~Cp~CKt~~Y~np~----lk~~in~C~H~lCEsCvd~iF~~g~----------~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPD----LKLMINECGHRLCESCVDRIFSLGP----------AQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCcc----ceeeeccccchHHHHHHHHHHhcCC----------CCCCcccchhh
Confidence            59999988888772    4455557999999999999887654          48999987653

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.34  E-value=0.78  Score=40.93  Aligned_cols=75  Identities=21%  Similarity=0.460  Sum_probs=47.0

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP  271 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~  271 (286)
                      .-+-.|..|-..+-+-.+      .-| .|-|.|..+|+.+|..+-..   ...-.-..||-|-+.+   .|..-.|.. 
T Consensus        48 DY~pNC~LC~t~La~gdt------~RL-vCyhlfHW~ClneraA~lPa---nTAPaGyqCP~Cs~ei---FPp~NlvsP-  113 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLASGDT------TRL-VCYHLFHWKCLNERAANLPA---NTAPAGYQCPCCSQEI---FPPINLVSP-  113 (299)
T ss_pred             CCCCCCceeCCccccCcc------eee-hhhhhHHHHHhhHHHhhCCC---cCCCCcccCCCCCCcc---CCCccccch-
Confidence            346789999886554331      345 79999999999999875221   1122337999998764   444443433 


Q ss_pred             HHHHHHHHHHHhhc
Q 023176          272 EEKQEIIDSYKSKL  285 (286)
Q Consensus       272 ~~k~~li~~yk~~~  285 (286)
                           ++++.|+.|
T Consensus       114 -----va~aLre~L  122 (299)
T KOG3970|consen  114 -----VAEALREQL  122 (299)
T ss_pred             -----hHHHHHHHH
Confidence                 444444444

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.92  E-value=0.18  Score=45.59  Aligned_cols=76  Identities=20%  Similarity=0.387  Sum_probs=51.3

Q ss_pred             ccCcccccccccccccCccccccceeecCCCC-----CcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSV  265 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~-----H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~  265 (286)
                      .+.|..|=||+.. -++    .++-.-...|.     |--..+||..|.+.++. +  ......+||+|++....+.|..
T Consensus        17 ~e~eR~CWiCF~T-deD----n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~-~--n~~q~V~C~QCqTEYiiv~P~l   88 (293)
T KOG3053|consen   17 QELERCCWICFAT-DED----NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR-G--NPLQTVSCPQCQTEYIIVFPQL   88 (293)
T ss_pred             cccceeEEEEecc-Ccc----cchhhhcccccccCccHHHHHHHHHHHHhHHhc-C--CCCceeechhhcchheeecccc
Confidence            4557889999995 222    12222222363     55678999999998764 1  2234579999999999999998


Q ss_pred             eeeCCcHHH
Q 023176          266 IWYYTPEEK  274 (286)
Q Consensus       266 ~~~~~~~~k  274 (286)
                      -|+....|+
T Consensus        89 ~~~~~~Le~   97 (293)
T KOG3053|consen   89 GPFDRVLER   97 (293)
T ss_pred             ChHHHHHHH
Confidence            887654333

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=89.84  E-value=0.41  Score=35.59  Aligned_cols=68  Identities=22%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT  270 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~  270 (286)
                      ......|-||-|.|=-..  ....|+.-..|+-..|..|..-=++...          ..||+|++.+....-+.. |..
T Consensus         6 ~~~~qiCqiCGD~VGl~~--~Ge~FVAC~eC~fPvCr~CyEYErkeg~----------q~CpqCkt~ykr~kgsp~-V~g   72 (80)
T PF14569_consen    6 NLNGQICQICGDDVGLTE--NGEVFVACHECAFPVCRPCYEYERKEGN----------QVCPQCKTRYKRHKGSPR-VEG   72 (80)
T ss_dssp             --SS-B-SSS--B--B-S--SSSB--S-SSS-----HHHHHHHHHTS-----------SB-TTT--B----TT-----TT
T ss_pred             hcCCcccccccCccccCC--CCCEEEEEcccCCccchhHHHHHhhcCc----------ccccccCCCcccccCCCC-CCC
Confidence            345678999999876544  4668888889999999999986665532          499999998876655544 443


Q ss_pred             c
Q 023176          271 P  271 (286)
Q Consensus       271 ~  271 (286)
                      +
T Consensus        73 D   73 (80)
T PF14569_consen   73 D   73 (80)
T ss_dssp             S
T ss_pred             C
Confidence            3

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=89.58  E-value=0.15  Score=39.41  Aligned_cols=33  Identities=30%  Similarity=0.674  Sum_probs=27.8

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHH
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIR  231 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~  231 (286)
                      +.+..|+||-..|.++      .|++.| |||+|+..|++
T Consensus        76 ~~~~~C~vC~k~l~~~------~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNS------VFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCCc------eEEEeC-CCeEEeccccc
Confidence            6678899999987664      588886 89999999985

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=89.53  E-value=0.097  Score=48.20  Aligned_cols=28  Identities=25%  Similarity=0.940  Sum_probs=25.2

Q ss_pred             CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176           30 PPNNICTYYQKGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus        30 ~~~~~C~~f~~G~C~~G~~C~y~H~~~~   57 (286)
                      .++.+|.||.+|.|..|+.|.|+|....
T Consensus        90 PKSvvCafFk~g~C~KG~kCKFsHdl~~  117 (343)
T KOG1763|consen   90 PKSVVCAFFKQGTCTKGDKCKFSHDLAV  117 (343)
T ss_pred             chHHHHHHHhccCCCCCCcccccchHHH
Confidence            5678999999999999999999998754

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=89.47  E-value=0.16  Score=52.53  Aligned_cols=46  Identities=30%  Similarity=0.867  Sum_probs=34.4

Q ss_pred             ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..|.||++  .+.+        ++..|+|.||.+|+..-......         ..||+||....
T Consensus       455 ~~c~ic~~--~~~~--------~it~c~h~~c~~c~~~~i~~~~~---------~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD--LDSF--------FITRCGHDFCVECLKKSIQQSEN---------APCPLCRNVLK  500 (674)
T ss_pred             cccccccc--cccc--------eeecccchHHHHHHHhccccccC---------CCCcHHHHHHH
Confidence            89999999  4443        44469999999999876654321         27999998764

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=89.10  E-value=0.78  Score=46.61  Aligned_cols=23  Identities=30%  Similarity=0.892  Sum_probs=13.4

Q ss_pred             cCChhhhcCCCCCCCCCcccCCCCCC
Q 023176          132 SICSFAAAGNCPRGEKCPHIHGDTCP  157 (286)
Q Consensus       132 ~lC~y~~~G~C~~Gd~C~y~Hg~~c~  157 (286)
                      .+|+|+-  .|++ -.|+|.|+..|-
T Consensus       626 ~~CrY~p--nCrn-m~C~F~HPk~cR  648 (681)
T KOG3702|consen  626 GLCRYRP--NCRN-MQCKFYHPKTCR  648 (681)
T ss_pred             ccceecc--CcCC-ccccccCCcccc
Confidence            4566653  3333 457777777764

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=87.21  E-value=0.2  Score=45.02  Aligned_cols=57  Identities=30%  Similarity=0.628  Sum_probs=45.7

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCccc--CCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACP--ICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP--~CR~~~~  259 (286)
                      ++.+|..|+||-...|-.|   +-+|-|-|.|-|-.|-+|.....+..+          ..||  -|-+...
T Consensus         6 ~~~~d~~CPvCksDrYLnP---dik~linPECyHrmCESCvdRIFs~Gp----------AqCP~~gC~kILR   64 (314)
T COG5220           6 EEMEDRRCPVCKSDRYLNP---DIKILINPECYHRMCESCVDRIFSRGP----------AQCPYKGCGKILR   64 (314)
T ss_pred             hhhhcccCCccccccccCC---CeEEEECHHHHHHHHHHHHHHHhcCCC----------CCCCCccHHHHHH
Confidence            3455678999999899888   467778888999999999999887654          3899  8876543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=86.34  E-value=0.95  Score=38.26  Aligned_cols=61  Identities=18%  Similarity=0.433  Sum_probs=39.8

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcC---cHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc---ccCc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPF---CISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV---IPSV  265 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~f---C~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~---~p~~  265 (286)
                      ..+..|=||.+. .+ +   +   ...=.|....   ..+|+++|...+.         ..+|++|+.++.+.   .|-.
T Consensus         6 ~~~~~CRIC~~~-~~-~---~---~~PC~CkGs~k~VH~sCL~rWi~~s~---------~~~CeiC~~~Y~i~~~~kpl~   68 (162)
T PHA02825          6 LMDKCCWICKDE-YD-V---V---TNYCNCKNENKIVHKECLEEWINTSK---------NKSCKICNGPYNIKKNYKKCT   68 (162)
T ss_pred             CCCCeeEecCCC-CC-C---c---cCCcccCCCchHHHHHHHHHHHhcCC---------CCcccccCCeEEEEEecCCCc
Confidence            457789999985 21 1   1   1111355533   7999999998654         36999999998743   4445


Q ss_pred             eeeC
Q 023176          266 IWYY  269 (286)
Q Consensus       266 ~~~~  269 (286)
                      .|.-
T Consensus        69 ~W~~   72 (162)
T PHA02825         69 KWRC   72 (162)
T ss_pred             cccc
Confidence            5643

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.86  E-value=1.1  Score=43.95  Aligned_cols=61  Identities=21%  Similarity=0.558  Sum_probs=39.4

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCccc--CCCccccccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACP--ICRKLSYFVI  262 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP--~CR~~~~~~~  262 (286)
                      ...+.+|+||++.+-.       . .+...|+|.||..|++.....+-..+....   .+||  -|+....-.+
T Consensus        67 ~~~~~~c~ic~~~~~~-------~-~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~---i~cp~~~C~a~v~~~~  129 (444)
T KOG1815|consen   67 KKGDVQCGICVESYDG-------E-IIGLGCGHPFCPPCWTGYLGTKIHEGEEAK---IKCPAHGCPALVGEDT  129 (444)
T ss_pred             CCccccCCcccCCCcc-------h-hhhcCCCcHHHHHHHHHHhhheeecccccc---ccCCCCCccccCCCce
Confidence            3556899999995321       1 344479999999999999987654432111   3444  5776655333

>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=85.76  E-value=0.42  Score=45.05  Aligned_cols=29  Identities=41%  Similarity=0.849  Sum_probs=25.5

Q ss_pred             CCCCccCChhhhcCCCCCCCCCcccCCCC
Q 023176          127 KPADRSICSFAAAGNCPRGEKCPHIHGDT  155 (286)
Q Consensus       127 ~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~  155 (286)
                      ......+|+||..|.|++|+.|.|.|...
T Consensus       157 krn~p~Icsf~v~geckRG~ec~yrhEkp  185 (377)
T KOG0153|consen  157 KRNRPHICSFFVKGECKRGAECPYRHEKP  185 (377)
T ss_pred             cCCCCccccceeeccccccccccccccCC
Confidence            45556789999999999999999999876

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=85.75  E-value=0.87  Score=42.94  Aligned_cols=60  Identities=23%  Similarity=0.531  Sum_probs=42.4

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY  269 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~  269 (286)
                      +|..|+.|||. ++-   .++.|---+ ||--.|.-|....++.-+          ..||.||....  --+..|+.
T Consensus        13 eed~cplcie~-mdi---tdknf~pc~-cgy~ic~fc~~~irq~ln----------grcpacrr~y~--denv~~~~   72 (480)
T COG5175          13 EEDYCPLCIEP-MDI---TDKNFFPCP-CGYQICQFCYNNIRQNLN----------GRCPACRRKYD--DENVRYVT   72 (480)
T ss_pred             ccccCcccccc-ccc---ccCCcccCC-cccHHHHHHHHHHHhhcc----------CCChHhhhhcc--ccceeEEe
Confidence            34559999995 432   345665564 999999999887776532          48999999865  44556665

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=84.46  E-value=0.56  Score=48.12  Aligned_cols=50  Identities=28%  Similarity=0.646  Sum_probs=36.4

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      -++++|+||++.++++         ++..|.|.||..|+..-......        -..||+|+...
T Consensus        19 ~k~lEc~ic~~~~~~p---------~~~kc~~~~l~~~~n~~f~~~~~--------~~~~~lc~~~~   68 (684)
T KOG4362|consen   19 QKILECPICLEHVKEP---------SLLKCDHIFLKFCLNKLFESKKG--------PKQCALCKSDI   68 (684)
T ss_pred             hhhccCCceeEEeecc---------chhhhhHHHHhhhhhceeeccCc--------cccchhhhhhh
Confidence            4578899999988774         44479999999998763332221        26899999544

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.35  E-value=0.31  Score=44.98  Aligned_cols=26  Identities=35%  Similarity=1.088  Sum_probs=22.8

Q ss_pred             Cccccccc-CCCCCCCCCcccCCCCCC
Q 023176           32 NNICTYYQ-KGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus        32 ~~~C~~f~-~G~C~~G~~C~y~H~~~~   57 (286)
                      .-+|+.|. +|+|.||+.|+|+|...+
T Consensus       186 pDicKdykeTgycg~gdSckFlh~r~D  212 (313)
T KOG1813|consen  186 PDICKDYKETGYCGYGDSCKFLHDRSD  212 (313)
T ss_pred             chhhhhhHhhCcccccchhhhhhhhhh
Confidence            34799998 899999999999999854

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=83.72  E-value=0.78  Score=30.71  Aligned_cols=42  Identities=33%  Similarity=0.751  Sum_probs=24.0

Q ss_pred             ccccccccccCccccccceeecCCCCC-----cCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176          197 CSVCLDRVLSKPTAAERKFGLLSECDH-----PFCISCIRNWRSSSPTSGMDVNTALRACPIC  254 (286)
Q Consensus       197 C~IC~e~i~~~~~~~~~~~~~l~~C~H-----~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C  254 (286)
                      |=||++.-.+.+       .++..|+=     .-..+|+++|...+.         ..+|++|
T Consensus         1 CrIC~~~~~~~~-------~li~pC~C~Gs~~~vH~~CL~~W~~~~~---------~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-------PLISPCRCKGSMKYVHRSCLERWIRESG---------NRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--------EE-SSS-SSCCGSEECCHHHHHHHHHT----------SB-TTT
T ss_pred             CeEeCCcCCCCC-------ceecccccCCCcchhHHHHHHHHHHhcC---------CCcCCCC
Confidence            679999633321       23334652     335789999998743         2579887

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=81.25  E-value=1.6  Score=40.84  Aligned_cols=58  Identities=26%  Similarity=0.635  Sum_probs=40.2

Q ss_pred             ccCcccccccccccccCccccccceeecCCC--CCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceee
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSEC--DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY  268 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C--~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~  268 (286)
                      ..+-++|+||.+. +..|        |.- |  ||.-|.+|-.+-.              ..||.||.....+       
T Consensus        45 ~~~lleCPvC~~~-l~~P--------i~Q-C~nGHlaCssC~~~~~--------------~~CP~Cr~~~g~~-------   93 (299)
T KOG3002|consen   45 DLDLLDCPVCFNP-LSPP--------IFQ-CDNGHLACSSCRTKVS--------------NKCPTCRLPIGNI-------   93 (299)
T ss_pred             chhhccCchhhcc-Cccc--------cee-cCCCcEehhhhhhhhc--------------ccCCccccccccH-------
Confidence            3445789999995 5555        553 7  7999999977443              4899999987633       


Q ss_pred             CCcHHHHHHHHH
Q 023176          269 YTPEEKQEIIDS  280 (286)
Q Consensus       269 ~~~~~k~~li~~  280 (286)
                       ..-..|+|++.
T Consensus        94 -R~~amEkV~e~  104 (299)
T KOG3002|consen   94 -RCRAMEKVAEA  104 (299)
T ss_pred             -HHHHHHHHHHh
Confidence             23456666664

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=80.93  E-value=0.98  Score=42.39  Aligned_cols=44  Identities=27%  Similarity=0.656  Sum_probs=33.2

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC  254 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C  254 (286)
                      .+...|+||+..+-+ |       .++.-=|-+||..||-+...+.           ..||+=
T Consensus       298 ~~~~~CpvClk~r~N-p-------tvl~vSGyVfCY~Ci~~Yv~~~-----------~~CPVT  341 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQN-P-------TVLEVSGYVFCYPCIFSYVVNY-----------GHCPVT  341 (357)
T ss_pred             CccccChhHHhccCC-C-------ceEEecceEEeHHHHHHHHHhc-----------CCCCcc
Confidence            445789999998655 4       3444469999999999999753           489863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	2e-13
2rhk_C	72	Cleavage and polyadenylation specificity factor su	1e-12
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	4e-11
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-06
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	7e-06
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-05
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-05
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-05
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	9e-05
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-04
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-04
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	5e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	6e-04

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 3  KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSR 58
          K V+CK +  G C KG+ CEF H++       C +Y K        C + H+ P  
Sbjct: 9  KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPES 64

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 61.4 bits (149), Expect = 1e-12
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 3  KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPS 57
          K V+CK +  G C KG+ CEF H++     + C +Y K        C + H+ P 
Sbjct: 15 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSNKECPFLHIDPE 69

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 57.8 bits (139), Expect = 4e-11
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 3  KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYY-QKGFCSYGSRCRYEHVKPS 57
          KR LCKF+  G C + E+C + H      +  C  Y   G C  G  C + H   +
Sbjct: 12 KRELCKFYITGFCARAENCPYMHG-----DFPCKLYHTTGNCINGDDCMFSHDPLT 62

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 3  KRVLCKFFA-HGACLKGEHCEFSHDWKDPPN---------NICTYYQK-GFCSYGSRCRY 51
          K  LC+ ++  G C  G  C+F+H   +             +C  ++  G C YGSRC +
Sbjct: 11 KTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHF 70

Query: 52 EH 53
           H
Sbjct: 71 IH 72

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 42.2 bits (99), Expect = 7e-06
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNT 246
             LR S  + C +C+D           +  + +EC H FC  C+R+   ++ T       
Sbjct: 8   TGLRPSGTVSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT------- 58

Query: 247 ALRACPICRK 256
               CP CRK
Sbjct: 59  ----CPTCRK 64

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 1/79 (1%)

Query: 178 SCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS 237
             +           ++E+ C++C    L               C       C+  W  + 
Sbjct: 292 MPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAK-CVLKCHAVCLEEWFKTL 350

Query: 238 PTSGMDVNTALRACPICRK 256
                 +  +   CP C+ 
Sbjct: 351 MDGKTFLEVSFGQCPFCKA 369

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 13/68 (19%)

Query: 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTAL 248
           LR S  + C +C+D           +  + +EC H FC  C+R+   ++ T         
Sbjct: 5   LRPSGTVSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT--------- 53

Query: 249 RACPICRK 256
             CP CRK
Sbjct: 54  --CPTCRK 59

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACP 252
             + C +C+D           +  + +EC H FC  C+R+   ++ T           CP
Sbjct: 2   AMVSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-----------CP 48

Query: 253 ICRK 256
            CRK
Sbjct: 49  TCRK 52

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 21/87 (24%)

Query: 170 EEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISC 229
           EE+E+     E+   H+  +  + E++C +C +    +             C H FC  C
Sbjct: 41  EEKEKMQAQKEEVLSHMNDVLEN-ELQCIICSE-YFIEAV--------TLNCAHSFCSYC 90

Query: 230 IRNWRSSSPTSGMDVNTALRACPICRK 256
           I  W                 CPICRK
Sbjct: 91  INEWMKRKIE-----------CPICRK 106

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 33/237 (13%), Positives = 67/237 (28%), Gaps = 69/237 (29%)

Query: 96  PFLPPNKTAWNPESVCND-SLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKC------ 148
            FL    +    E      S+      E R+          FA   N  R +        
Sbjct: 92  KFL---MSPIKTE--QRQPSMMTRMYIEQRD--RLYNDNQVFAK-YNVSRLQPYLKLRQA 143

Query: 149 -----PH----IHGDTCPTCGKQCL--HPFRPEEREEHM---------KSCEKKQKHLEA 188
                P     I G      GK  +        + +  M         K+C   +  LE 
Sbjct: 144 LLELRPAKNVLIDGV--LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 189 LRR-SQEIECSVC--LDRVLSKP----TAAERKFGLLSECDHPFCISCIRNWRSSSPTSG 241
           L++   +I+ +     D   +      +       LL    +  C+  + N +++   + 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 242 MDVNTALRACPICRKL-----------------SYFVIPSVIWYYTPEEKQEIIDSY 281
            +++        C+ L                 ++  +       TP+E + ++  Y
Sbjct: 262 FNLS--------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 19/88 (21%)

Query: 169 PEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCIS 228
            E   +      ++Q  L     S    C +C +               +  C H  C S
Sbjct: 307 CEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAEN-DKDVK--------IEPCGHLMCTS 357

Query: 229 CIRNWRSSSPTSGMDVNTALRACPICRK 256
           C+ +W+ S            + CP CR 
Sbjct: 358 CLTSWQESEG----------QGCPFCRC 375

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 19/61 (31%)

Query: 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255
            C +CL+   +              C H FC  CI  W   +PT           CP+C+
Sbjct: 7   RCPICLEDPSNYSM--------ALPCLHAFCYVCITRWIRQNPT-----------CPLCK 47

Query: 256 K 256
            
Sbjct: 48  V 48

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 15/83 (18%)

Query: 183 QKHLEALRRSQEIECSVCLDR---------VLSKPTAAERKFGLLSECDHPFCISCIRNW 233
           +K+ E L+ + E +C +C+++         +           G L++C H F + C+   
Sbjct: 14  RKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAM 73

Query: 234 RSSSPTSGMDVNTALRACPICRK 256
             +    G         CP C+ 
Sbjct: 74  YCNGNKDG------SLQCPSCKT 90

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 19/63 (30%)

Query: 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI 253
            I CS+C    L   T        ++EC H FC SCI      S             CP 
Sbjct: 15  YILCSICKG-YLIDAT-------TITECLHTFCKSCIVRHFYYSNR-----------CPK 55

Query: 254 CRK 256
           C  
Sbjct: 56  CNI 58

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 20/84 (23%)

Query: 173 EEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN 232
             H       ++ +E++  ++   C +C++  L           L   C    C SCIR 
Sbjct: 3   HHHHHHSHMDEQSVESI--AEVFRCFICME-KLRDAR-------LCPHCSKLCCFSCIRR 52

Query: 233 WRSSSPTSGMDVNTALRACPICRK 256
           W +               CP CR 
Sbjct: 53  WLTEQRAQ----------CPHCRA 66

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 19/63 (30%)

Query: 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI 253
            + C +C +   +          ++ +C H +C  CIR + S               CP 
Sbjct: 22  LLRCGICFE-YFNIAM-------IIPQCSHNYCSLCIRKFLSYKTQ-----------CPT 62

Query: 254 CRK 256
           C  
Sbjct: 63  CCV 65

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 19/64 (29%)

Query: 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACP 252
             + C +C        T        + EC H FC +CI  +  +S             CP
Sbjct: 14  PHLMCVLCGG-YFIDAT-------TIIECLHSFCKTCIVRYLETSKY-----------CP 54

Query: 253 ICRK 256
           IC  
Sbjct: 55  ICDV 58

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 29/67 (43%)

Query: 194 EIECSVCLD----RVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALR 249
           E EC +C+D     +L               C H FC  CI  W                
Sbjct: 15  EEECCICMDGRADLILP--------------CAHSFCQKCIDKWSDRHRN---------- 50

Query: 250 ACPICRK 256
            CPICR 
Sbjct: 51  -CPICRL 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.58
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.56
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.44
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.38
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.37
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.36
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.35
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.33
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.32
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.3
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.3
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.3
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.29
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.28
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.27
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.27
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.26
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.24
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.23
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.23
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.23
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.22
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.22
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.21
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.2
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.2
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.2
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.2
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	99.19
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.18
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.18
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.18
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.17
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.17
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.16
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.16
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.16
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.16
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.15
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.14
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.14
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.14
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.13
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.13
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.12
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.12
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.11
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.11
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.1
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.1
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.09
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.09
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.09
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	99.06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.04
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.03
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.03
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.99
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.99
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.98
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.97
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.93
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.91
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.91
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.88
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.86
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.84
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.82
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.82
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.81
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.8
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.79
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.79
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.78
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.77
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.74
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.69
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.68
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.54
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.54
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.41
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.34
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.33
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.25
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.07
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.96
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.36
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.16
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	96.9
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	95.78
3nw0_A	238	Non-structural maintenance of chromosomes element	96.58
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.37
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.35
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.87
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	95.02
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	94.4
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	88.54
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	88.19
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	83.69

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=7.9e-16  Score=113.99  Aligned_cols=56  Identities=38%  Similarity=0.902  Sum_probs=52.3

Q ss_pred             CCccccccccccCCCCCCCCCccCCCCCCCcccccccC-CCCCCCCCcccCCCCCCCC
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPSRS   59 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~-G~C~~G~~C~y~H~~~~~~   59 (286)
                      |+++|+||++|.|++|++|+|+|+.+..+.++|+||++ |.|. |++|+|.|..+...
T Consensus         9 k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~   65 (77)
T 2d9n_A            9 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPESK   65 (77)
T ss_dssp             TTSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred             cceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence            78999999999999999999999998888899999998 9999 99999999997644

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.56  E-value=5.8e-16  Score=113.21  Aligned_cols=55  Identities=38%  Similarity=0.918  Sum_probs=51.3

Q ss_pred             CCccccccccccCCCCCCCCCccCCCCCCCcccccccC-CCCCCCCCcccCCCCCCC
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPSR   58 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~-G~C~~G~~C~y~H~~~~~   58 (286)
                      ++++|+||++|.|++|++|+|+|+++..+.++|+||++ |.|.+ ++|+|.|..++.
T Consensus        15 k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           15 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             CCSBCHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             cCeeCHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence            78899999999999999999999998888999999998 99998 999999998764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.44  E-value=1.2e-13  Score=104.72  Aligned_cols=74  Identities=20%  Similarity=0.547  Sum_probs=55.0

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY  269 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~  269 (286)
                      ...++++|+||++ ++.+|       ++++.|||+||..||..|+....         ...||+||+.+..  +..  +.
T Consensus         9 ~~~~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~~~--~~~--~~   67 (92)
T 3ztg_A            9 PIPDELLCLICKD-IMTDA-------VVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQNDVS--PDA--LI   67 (92)
T ss_dssp             CCCTTTEETTTTE-ECSSC-------EECTTTCCEECHHHHHHHHHHCT---------TCCCTTTCCSSCC--TTS--CE
T ss_pred             cCCcCCCCCCCCh-hhcCc-------eECCCCCCHHHHHHHHHHHHhcC---------CCcCcCCCCcCCC--ccc--cC
Confidence            3456899999999 67777       67766999999999999997543         2599999998621  111  22


Q ss_pred             CcHHHHHHHHHHHhh
Q 023176          270 TPEEKQEIIDSYKSK  284 (286)
Q Consensus       270 ~~~~k~~li~~yk~~  284 (286)
                      .+...+++|+.|+..
T Consensus        68 ~n~~l~~~i~~~~~~   82 (92)
T 3ztg_A           68 ANKFLRQAVNNFKNE   82 (92)
T ss_dssp             ECHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            356677888888763

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.38  E-value=2.2e-13  Score=105.23  Aligned_cols=49  Identities=37%  Similarity=0.885  Sum_probs=46.0

Q ss_pred             CCccccccccccCCCCCCCCCccCCCCCCCccccccc-CCCCCCCCCcccCCCCC
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKP   56 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~-~G~C~~G~~C~y~H~~~   56 (286)
                      |+.+|+||++|.|++|++|+|+|+     ..+|+||+ +|.|.+|++|+|.|...
T Consensus        12 k~~lC~~f~~G~C~~G~~C~f~H~-----~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           12 KRELCKFYITGFCARAENCPYMHG-----DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSS-----SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCccCcccccCcCCCCCCCCCCCC-----CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            788999999999999999999998     68899996 99999999999999964

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.37  E-value=3.4e-13  Score=99.08  Aligned_cols=69  Identities=14%  Similarity=0.386  Sum_probs=53.5

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc--ccccCcee
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVIW  267 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~--~~~p~~~~  267 (286)
                      +..+++.|+||++ ++.+|       +++ .|||+||..||.+|+....          .+||+||..+.  .++|    
T Consensus         4 ~~~~~~~C~IC~~-~~~~P-------v~~-~CgH~fc~~Ci~~~~~~~~----------~~CP~C~~~~~~~~l~~----   60 (78)
T 1t1h_A            4 EFPEYFRCPISLE-LMKDP-------VIV-STGQTYERSSIQKWLDAGH----------KTCPKSQETLLHAGLTP----   60 (78)
T ss_dssp             CCSSSSSCTTTSC-CCSSE-------EEE-TTTEEEEHHHHHHHHTTTC----------CBCTTTCCBCSSCCCEE----
T ss_pred             CCcccCCCCCccc-cccCC-------EEc-CCCCeecHHHHHHHHHHCc----------CCCCCCcCCCChhhCcc----
Confidence            3456899999999 68887       677 4999999999999997422          58999999875  2333    


Q ss_pred             eCCcHHHHHHHHHHHhh
Q 023176          268 YYTPEEKQEIIDSYKSK  284 (286)
Q Consensus       268 ~~~~~~k~~li~~yk~~  284 (286)
                         +...+++|+.|+++
T Consensus        61 ---n~~l~~~i~~~~~~   74 (78)
T 1t1h_A           61 ---NYVLKSLIALWCES   74 (78)
T ss_dssp             ---CTTTHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHH
Confidence               34467789999865

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.36  E-value=1.8e-13  Score=100.84  Aligned_cols=54  Identities=33%  Similarity=0.893  Sum_probs=25.0

Q ss_pred             CCccccccc-cccCCCCCCCCCccCCCCC---------CCccccccc-CCCCCCCCCcccCCCCC
Q 023176            3 KRVLCKFFA-HGACLKGEHCEFSHDWKDP---------PNNICTYYQ-KGFCSYGSRCRYEHVKP   56 (286)
Q Consensus         3 k~~~C~~f~-~G~C~~G~~C~f~H~~~~~---------~~~~C~~f~-~G~C~~G~~C~y~H~~~   56 (286)
                      |+.+|++|+ +|.|++|++|+|+|+....         ++.+|++|. .|.|.+|++|+|+|...
T Consensus        11 kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A           11 KTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             CSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred             cchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            789999996 8999999999999997642         267998665 89999999999999874

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.35  E-value=1.1e-13  Score=100.63  Aligned_cols=54  Identities=33%  Similarity=0.790  Sum_probs=47.2

Q ss_pred             CCccccccccccCCCCC-CCCCccCCC-------CCCCcccccccCCCCCCCCCcccCCCCCC
Q 023176            3 KRVLCKFFAHGACLKGE-HCEFSHDWK-------DPPNNICTYYQKGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~-~C~f~H~~~-------~~~~~~C~~f~~G~C~~G~~C~y~H~~~~   57 (286)
                      +..+|++|++|.|++|+ .|+|+|+.+       ..+.++|.+|++|.|.+| +|+|.|..+.
T Consensus         5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~   66 (70)
T 3d2q_A            5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSRE-KCKYFHPPAH   66 (70)
T ss_dssp             EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCT-TCCSBCCCHH
T ss_pred             cchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCC-CcCeeCCHHH
Confidence            56799999999999999 599999764       345789999999999988 9999998754

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.33  E-value=8e-13  Score=96.47  Aligned_cols=52  Identities=25%  Similarity=0.666  Sum_probs=42.5

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      ...++++|+||++ ++.+|       +++++|||+||..||.+|+....         ...||+||+.+
T Consensus        11 ~~~~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~   62 (74)
T 2yur_A           11 PIPDELLCLICKD-IMTDA-------VVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQND   62 (74)
T ss_dssp             CSCGGGSCSSSCC-CCTTC-------EECSSSCCEECTTHHHHHHHHSS---------SSCCSSSCCSS
T ss_pred             cCCCCCCCcCCCh-HHhCC-------eEcCCCCCHHHHHHHHHHHHhcC---------CCcCCCCCCcC
Confidence            3456789999999 57777       67766999999999999998643         25899999964

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.32  E-value=5.6e-13  Score=104.17  Aligned_cols=73  Identities=23%  Similarity=0.483  Sum_probs=52.4

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT  270 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~  270 (286)
                      ..+++.|+||++ ++.+|       +++..|||+||..||.+|....           ..||+||..+....|... +..
T Consensus        12 ~~~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~~~-l~~   71 (108)
T 2ckl_A           12 LNPHLMCVLCGG-YFIDA-------TTIIECLHSFCKTCIVRYLETS-----------KYCPICDVQVHKTRPLLN-IRS   71 (108)
T ss_dssp             HGGGTBCTTTSS-BCSSE-------EEETTTCCEEEHHHHHHHHTSC-----------SBCTTTCCBSCSSCGGGG-EEE
T ss_pred             cCCcCCCccCCh-HHhCc-------CEeCCCCChhhHHHHHHHHHhC-----------CcCcCCCccccccCcccc-cCc
Confidence            355899999999 56666       5664699999999999999653           489999999765433222 223


Q ss_pred             cHHHHHHHHHHHh
Q 023176          271 PEEKQEIIDSYKS  283 (286)
Q Consensus       271 ~~~k~~li~~yk~  283 (286)
                      +...+.||+.|..
T Consensus        72 n~~l~~~i~~~~~   84 (108)
T 2ckl_A           72 DKTLQDIVYKLVP   84 (108)
T ss_dssp             CHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHhh
Confidence            4456666666654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.30  E-value=1.4e-12  Score=100.24  Aligned_cols=68  Identities=22%  Similarity=0.566  Sum_probs=51.3

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcH
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPE  272 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~  272 (286)
                      ++..|+||++ ++.+|       .++..|||.||..||..|...+           ..||+||..+..  + .  +..+.
T Consensus        21 ~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~--~-~--l~~n~   76 (99)
T 2y43_A           21 DLLRCGICFE-YFNIA-------MIIPQCSHNYCSLCIRKFLSYK-----------TQCPTCCVTVTE--P-D--LKNNR   76 (99)
T ss_dssp             HHTBCTTTCS-BCSSE-------EECTTTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCG--G-G--CEECH
T ss_pred             CCCCcccCCh-hhCCc-------CEECCCCCHhhHHHHHHHHHCC-----------CCCCCCCCcCCh--h-h--CCcCH
Confidence            4678999999 56666       5665699999999999999743           489999998763  1 1  22345


Q ss_pred             HHHHHHHHHHhh
Q 023176          273 EKQEIIDSYKSK  284 (286)
Q Consensus       273 ~k~~li~~yk~~  284 (286)
                      .-++||+.|++.
T Consensus        77 ~l~~~i~~~~~~   88 (99)
T 2y43_A           77 ILDELVKSLNFA   88 (99)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            577788888753

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.1e-13  Score=106.93  Aligned_cols=55  Identities=33%  Similarity=0.741  Sum_probs=48.6

Q ss_pred             CCccccccccccCCCCC-CCCCccCCCC-------CCCcccccccCCCCCCCCCcccCCCCCCC
Q 023176            3 KRVLCKFFAHGACLKGE-HCEFSHDWKD-------PPNNICTYYQKGFCSYGSRCRYEHVKPSR   58 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~-~C~f~H~~~~-------~~~~~C~~f~~G~C~~G~~C~y~H~~~~~   58 (286)
                      +..+|++|++|.|++|+ .|+|+|+.+.       .+.++|.+|++|.|.+| +|+|.|..+..
T Consensus        19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l   81 (98)
T 2e5s_A           19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMRE-KCKYFHPPAHL   81 (98)
T ss_dssp             EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCT-TCCSBCCCHHH
T ss_pred             hhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCC-CcCccCChHHH
Confidence            45799999999999999 8999999753       46789999999999988 99999998654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.30  E-value=3.5e-12  Score=104.06  Aligned_cols=49  Identities=35%  Similarity=0.842  Sum_probs=40.3

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV  261 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~  261 (286)
                      ++++|+||++ ++.+|       +++ .|||+||..||..|+..+           .+||+||+.+...
T Consensus        52 ~~~~C~iC~~-~~~~~-------~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           52 NELQCIICSE-YFIEA-------VTL-NCAHSFCSYCINEWMKRK-----------IECPICRKDIKSK  100 (138)
T ss_dssp             HHSBCTTTCS-BCSSE-------EEE-TTSCEEEHHHHHHHTTTC-----------SBCTTTCCBCCCE
T ss_pred             ccCCCcccCc-ccCCc-------eEC-CCCCCccHHHHHHHHHcC-----------CcCCCCCCcCCCC
Confidence            4678999999 56676       677 499999999999998653           4899999987643

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.1e-12  Score=95.59  Aligned_cols=50  Identities=24%  Similarity=0.594  Sum_probs=40.9

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      +...+..|+||++. +.+|       .++ .|||+||..||.+|....           ..||+||+.+.
T Consensus        11 ~~~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~   60 (81)
T 2csy_A           11 EEEIPFRCFICRQA-FQNP-------VVT-KCRHYFCESCALEHFRAT-----------PRCYICDQPTG   60 (81)
T ss_dssp             CCCCCSBCSSSCSB-CCSE-------EEC-TTSCEEEHHHHHHHHHHC-----------SBCSSSCCBCC
T ss_pred             cCCCCCCCcCCCch-hcCe-------eEc-cCCCHhHHHHHHHHHHCC-----------CcCCCcCcccc
Confidence            34557899999994 6666       566 599999999999999753           48999999975

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.28  E-value=2.5e-12  Score=99.28  Aligned_cols=51  Identities=29%  Similarity=0.767  Sum_probs=41.4

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..+++.|+||++ ++.+|       +++..|||+||..||.+|+....          ..||+||..+.
T Consensus        19 l~~~~~C~IC~~-~~~~p-------~~~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~   69 (100)
T 3lrq_A           19 IAEVFRCFICME-KLRDA-------RLCPHCSKLCCFSCIRRWLTEQR----------AQCPHCRAPLQ   69 (100)
T ss_dssp             HHHHTBCTTTCS-BCSSE-------EECTTTCCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred             CCCCCCCccCCc-cccCc-------cccCCCCChhhHHHHHHHHHHCc----------CCCCCCCCcCC
Confidence            345788999999 56666       56247999999999999998752          48999999975

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.5e-12  Score=93.18  Aligned_cols=51  Identities=33%  Similarity=0.615  Sum_probs=41.9

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      ..++.+|+||++ ++.+|       .++..|+|+||..||.+|.+..           ..||+||+.+..
T Consensus        12 ~~~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~   62 (72)
T 2djb_A           12 LTPYILCSICKG-YLIDA-------TTITECLHTFCKSCIVRHFYYS-----------NRCPKCNIVVHQ   62 (72)
T ss_dssp             CCGGGSCTTTSS-CCSSC-------EECSSSCCEECHHHHHHHHHHC-----------SSCTTTCCCCCS
T ss_pred             cCCCCCCCCCCh-HHHCc-------CEECCCCCHHHHHHHHHHHHcC-----------CcCCCcCcccCc
Confidence            355789999999 56666       5665799999999999999763           489999998764

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.27  E-value=4.4e-12  Score=101.42  Aligned_cols=70  Identities=17%  Similarity=0.369  Sum_probs=52.0

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP  271 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~  271 (286)
                      .++.+|+||++ ++.+|       +++ .|||+||..||..|+....          ..||+||..+...  .  .+..+
T Consensus        50 ~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~--~--~~~~n  106 (124)
T 3fl2_A           50 EETFQCICCQE-LVFRP-------ITT-VCQHNVCKDCLDRSFRAQV----------FSCPACRYDLGRS--Y--AMQVN  106 (124)
T ss_dssp             HHHTBCTTTSS-BCSSE-------EEC-TTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT--C--CCCCC
T ss_pred             ccCCCCCcCCh-HHcCc-------EEe-eCCCcccHHHHHHHHhHCc----------CCCCCCCccCCCC--C--CCCCC
Confidence            45688999999 57777       667 5999999999999997432          4999999987531  1  13445


Q ss_pred             HHHHHHHHHHHhh
Q 023176          272 EEKQEIIDSYKSK  284 (286)
Q Consensus       272 ~~k~~li~~yk~~  284 (286)
                      .....||+.|-..
T Consensus       107 ~~l~~~i~~~~p~  119 (124)
T 3fl2_A          107 QPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccc
Confidence            6677788877543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.26  E-value=2.3e-12  Score=92.60  Aligned_cols=58  Identities=34%  Similarity=0.742  Sum_probs=43.1

Q ss_pred             HhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       189 ~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...+++.+|+||++. +.+|...++...++ .|||.||..||.+|.+.+           .+||+||+.+.
T Consensus         5 ~~~~~~~~C~IC~~~-~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~   62 (71)
T 3ng2_A            5 LRPSGTVSCPICMDG-YSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN   62 (71)
T ss_dssp             -CCTTCCBCTTTCCB-HHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCC
T ss_pred             CCCCCCCCCcccChh-hhccccccCCeEeC-CCCChHhHHHHHHHHHcC-----------CCCCCCCCccC
Confidence            455678999999995 54432223333455 699999999999999764           48999999875

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=3.5e-12  Score=90.93  Aligned_cols=56  Identities=32%  Similarity=0.717  Sum_probs=42.0

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..++.+|+||++. +.++....+.+.++ .|||.||..||.+|....           .+||+||+.+.
T Consensus        12 ~~~~~~C~IC~~~-~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~   67 (69)
T 2ea6_A           12 PSGTVSCPICMDG-YSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN   67 (69)
T ss_dssp             TTCCCCCTTTCCC-HHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHHC-----------SSCTTTCCCCC
T ss_pred             CCCCCCCcccCcc-ccccccccCCeEeC-CCCChhcHHHHHHHHHcC-----------CCCCCCCCccC
Confidence            3567899999995 55442223444555 699999999999999763           48999999764

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.23  E-value=3.8e-12  Score=87.04  Aligned_cols=51  Identities=31%  Similarity=0.811  Sum_probs=39.6

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      .++.+|+||++.+.+.     ....+++.|+|.||..||.+|.+.+           .+||+||..+
T Consensus         3 ~~~~~C~IC~~~~~~~-----~~~~~~~~C~H~f~~~Ci~~w~~~~-----------~~CP~Cr~~~   53 (55)
T 1iym_A            3 DDGVECAVCLAELEDG-----EEARFLPRCGHGFHAECVDMWLGSH-----------STCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTT-----SCCEECSSSCCEECTTHHHHTTTTC-----------CSCSSSCCCS
T ss_pred             CCCCcCccCCccccCC-----CceEECCCCCCcccHHHHHHHHHcC-----------CcCcCCCCEe
Confidence            4678999999964332     1235676799999999999998653           4899999875

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.23  E-value=1e-11  Score=93.33  Aligned_cols=69  Identities=17%  Similarity=0.132  Sum_probs=53.9

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT  270 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~  270 (286)
                      ..++..|+||++ ++.+|       ++++ |||+||..||..|+...           .+||+||..+..   . . +..
T Consensus        11 ~p~~~~CpI~~~-~m~dP-------V~~~-cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~---~-~-l~p   65 (85)
T 2kr4_A           11 APDEFRDPLMDT-LMTDP-------VRLP-SGTVMDRSIILRHLLNS-----------PTDPFNRQMLTE---S-M-LEP   65 (85)
T ss_dssp             CCTTTBCTTTCS-BCSSE-------EECT-TSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCG---G-G-CEE
T ss_pred             CchheECcccCc-hhcCC-------eECC-CCCEECHHHHHHHHhcC-----------CCCCCCcCCCCh---H-h-cch
Confidence            356899999999 79998       7886 99999999999999753           489999998652   1 1 233


Q ss_pred             cHHHHHHHHHHHhh
Q 023176          271 PEEKQEIIDSYKSK  284 (286)
Q Consensus       271 ~~~k~~li~~yk~~  284 (286)
                      +..-..+|+.|++.
T Consensus        66 n~~L~~~i~~~~~~   79 (85)
T 2kr4_A           66 VPELKEQIQAWMRE   79 (85)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            45577788888753

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.23  E-value=1.1e-11  Score=95.78  Aligned_cols=33  Identities=24%  Similarity=0.620  Sum_probs=30.1

Q ss_pred             CCccCCCC-CCCcccccccCCCCCCCCCcccCCC
Q 023176           22 EFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHV   54 (286)
Q Consensus        22 ~f~H~~~~-~~~~~C~~f~~G~C~~G~~C~y~H~   54 (286)
                      .|+|+... .++.+|+||++|.|.+|++|+|+|.
T Consensus         2 ~~sH~~~~~~k~~lC~~f~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A            2 SSGSSGELPKKRELCKFYITGFCARAENCPYMHG   35 (98)
T ss_dssp             CCCCCCCCSCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             CccccCCCCCCCccCcccccCcCCCCCCCCCCCC
Confidence            37899775 6889999999999999999999998

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.22  E-value=4.1e-12  Score=89.26  Aligned_cols=54  Identities=31%  Similarity=0.729  Sum_probs=41.4

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ++.+|+||++. +.++....+...++ .|||.||..||.+|.+.+           .+||+||+.+.
T Consensus         2 ~~~~C~IC~~~-~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~   55 (64)
T 2xeu_A            2 AMVSCPICMDG-YSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN   55 (64)
T ss_dssp             CCCBCTTTCCB-HHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCT
T ss_pred             CCCCCCccChh-hhCccccCCCEEeC-CCCCchhHHHHHHHHHcC-----------CCCCCCCccCC
Confidence            57899999995 55442233444556 699999999999999763           48999999875

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.22  E-value=1e-11  Score=88.94  Aligned_cols=58  Identities=29%  Similarity=0.663  Sum_probs=44.1

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccC
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS  264 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~  264 (286)
                      ....+..|+||++.+.+.     ....++ .|+|.||..||.+|....           .+||+||..+....|.
T Consensus        10 ~~~~~~~C~IC~~~~~~~-----~~~~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~   67 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEG-----EDVRRL-PCMHLFHQVCVDQWLITN-----------KKCPICRVDIEAQLPS   67 (69)
T ss_dssp             STTCCCSBTTTTBCCCSS-----SCEEEC-TTSCEEEHHHHHHHHHHC-----------SBCTTTCSBSCSCCCC
T ss_pred             cCCCCCCCeeCCccccCC-----CcEEEe-CCCCHHHHHHHHHHHHcC-----------CCCcCcCccccCcCCC
Confidence            345678999999964332     123556 599999999999999864           3799999998876654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.21  E-value=9.6e-12  Score=88.19  Aligned_cols=53  Identities=23%  Similarity=0.505  Sum_probs=40.0

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ++.+|+||++.++.+|   ...+.++ .|||+||..||.+|+....          ..||+||+.+.
T Consensus         2 ~~~~C~IC~~~~~~~~---~~~~~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~   54 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNP---SLKLMVN-VCGHTLCESCVDLLFVRGA----------GNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCS---SCCEEEC-TTCCCEEHHHHHHHHHTTS----------SSCTTTCCCCS
T ss_pred             CCCcCCcCCCCccCCC---ccCeecC-CCCCHhHHHHHHHHHHcCC----------CcCCCCCCccc
Confidence            5788999999445555   2333445 6999999999999976432          48999999875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.20  E-value=1e-11  Score=97.10  Aligned_cols=51  Identities=27%  Similarity=0.755  Sum_probs=40.6

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      .++..|+||++ ++.+|       .++ .|||.||..||..|......        ...||+||..+.
T Consensus        19 ~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~   69 (112)
T 1jm7_A           19 QKILECPICLE-LIKEP-------VST-KCDHIFCKFCMLKLLNQKKG--------PSQCPLCKNDIT   69 (112)
T ss_dssp             HHHTSCSSSCC-CCSSC-------CBC-TTSCCCCSHHHHHHHHSSSS--------SCCCTTTSCCCC
T ss_pred             cCCCCCcccCh-hhcCe-------EEC-CCCCHHHHHHHHHHHHhCCC--------CCCCcCCCCcCC
Confidence            34678999999 56666       566 59999999999999975421        258999999876

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1e-11  Score=88.37  Aligned_cols=51  Identities=33%  Similarity=0.648  Sum_probs=40.5

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...++.+|+||++ ++.+|       .++ .|||+||..||.+|....          ...||+||+.+.
T Consensus        11 ~~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~   61 (66)
T 2ecy_A           11 TVEDKYKCEKCHL-VLCSP-------KQT-ECGHRFCESCMAALLSSS----------SPKCTACQESIV   61 (66)
T ss_dssp             SCCCCEECTTTCC-EESSC-------CCC-SSSCCCCHHHHHHHHTTS----------SCCCTTTCCCCC
T ss_pred             cCCcCCCCCCCCh-HhcCe-------eEC-CCCCHHHHHHHHHHHHhC----------cCCCCCCCcCCC
Confidence            3456789999999 56666       455 699999999999999632          258999999864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=9.8e-12  Score=89.85  Aligned_cols=53  Identities=34%  Similarity=0.898  Sum_probs=41.5

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...++..|+||++ .+.+|       .++ .|||.||..||.+|.....        ....||+||+.+.
T Consensus        16 ~~~~~~~C~IC~~-~~~~~-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           16 KLQEEVICPICLD-ILQKP-------VTI-DCGHNFCLKCITQIGETSC--------GFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCCCBCTTTCS-BCSSE-------EEC-TTCCEEEHHHHHHHCSSSC--------SCCCCSSSCCCCC
T ss_pred             hCccCCEeccCCc-ccCCe-------EEc-CCCChhhHHHHHHHHHcCC--------CCCCCCCCCCcCC
Confidence            3456789999999 56666       566 6999999999999996321        1359999999864

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.1e-11  Score=89.91  Aligned_cols=56  Identities=23%  Similarity=0.677  Sum_probs=42.9

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      +...+.+|+||++. +..+    ....+++ |+|.||..||.+|...+           .+||+||+.+..+.
T Consensus        11 ~~~~~~~C~IC~~~-~~~~----~~~~~~~-C~H~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           11 ELNLHELCAVCLED-FKPR----DELGICP-CKHAFHRKCLIKWLEVR-----------KVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCCCSCBCSSSCCB-CCSS----SCEEEET-TTEEEEHHHHHHHHHHC-----------SBCTTTCCBCSSCC
T ss_pred             cCCCCCCCcCCCcc-cCCC----CcEEEcC-CCCEecHHHHHHHHHcC-----------CcCCCcCccccccc
Confidence            34567899999996 5443    2345665 99999999999999764           38999999876443

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=99.19  E-value=4.7e-12  Score=94.77  Aligned_cols=54  Identities=31%  Similarity=0.653  Sum_probs=47.3

Q ss_pred             CCccccccccccCCCCC-CCCCccCCCC-----CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176            3 KRVLCKFFAHGACLKGE-HCEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~-~C~f~H~~~~-----~~~~~C~~f~~G~C~~G~~C~y~H~~~~   57 (286)
                      +..+|++|++|.|.+|+ .|+|+|+...     .+.++|.+|++|.|..+ .|+|.|..+.
T Consensus         8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~~   67 (83)
T 3d2n_A            8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPPH   67 (83)
T ss_dssp             EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCS-SCSSCCCCHH
T ss_pred             cchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCC-CcceeCChHH
Confidence            45799999999999997 9999999753     45789999999999977 9999999764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=6.6e-12  Score=90.66  Aligned_cols=50  Identities=28%  Similarity=0.661  Sum_probs=40.8

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...++.+|+||++. +.+|       +++ .|+|.||..||.+|....           ..||+||..+.
T Consensus        11 ~~~~~~~C~IC~~~-~~~~-------~~~-~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~   60 (71)
T 2d8t_A           11 PSLTVPECAICLQT-CVHP-------VSL-PCKHVFCYLCVKGASWLG-----------KRCALCRQEIP   60 (71)
T ss_dssp             SSSSCCBCSSSSSB-CSSE-------EEE-TTTEEEEHHHHHHCTTCS-----------SBCSSSCCBCC
T ss_pred             cCCCCCCCccCCcc-cCCC-------EEc-cCCCHHHHHHHHHHHHCC-----------CcCcCcCchhC
Confidence            34567899999995 6665       667 499999999999998643           48999999875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.7e-11  Score=93.65  Aligned_cols=74  Identities=20%  Similarity=0.315  Sum_probs=54.9

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccC--CCcc---ccccccCce
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKL---SYFVIPSVI  266 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~--CR~~---~~~~~p~~~  266 (286)
                      .+++.|+||++ +|.+|       ++++.|||+||..||.+|+.....     .+...+||+  |+..   ...++|   
T Consensus         5 ~~~~~CPI~~~-~~~dP-------V~~~~cGh~f~r~cI~~~l~~~~~-----~~~~~~CP~tgc~~~~l~~~~L~p---   68 (94)
T 2yu4_A            5 SSGFTCPITKE-EMKKP-------VKNKVCGHTYEEDAIVRMIESRQK-----RKKKAYCPQIGCSHTDIRKSDLIQ---   68 (94)
T ss_dssp             SSCCBCTTTCS-BCSSE-------EEESSSCCEEEHHHHHHHHHHHHT-----TTCCBCCCSTTCCCCCBCGGGEEE---
T ss_pred             CcEeECcCcCc-hhcCC-------EEcCCCCCeecHHHHHHHHHHccC-----cCCCCCCCcCcCcccccCHhhCcC---
Confidence            46799999999 78888       788669999999999999976310     011358999  9865   223333   


Q ss_pred             eeCCcHHHHHHHHHHHhhc
Q 023176          267 WYYTPEEKQEIIDSYKSKL  285 (286)
Q Consensus       267 ~~~~~~~k~~li~~yk~~~  285 (286)
                          +...+.+|+.|++..
T Consensus        69 ----n~~L~~~I~~~~~~~   83 (94)
T 2yu4_A           69 ----DEALRRAIENHNKKR   83 (94)
T ss_dssp             ----CHHHHHHHHHHHTTC
T ss_pred             ----CHHHHHHHHHHHHHh
Confidence                456788999998753

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.18  E-value=1.6e-11  Score=101.80  Aligned_cols=71  Identities=23%  Similarity=0.420  Sum_probs=53.8

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP  271 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~  271 (286)
                      .+++.|+||++ ++.+|       +++ .|||+||..||..|.....          ..||+||..+..-   . -+..+
T Consensus        76 ~~~~~C~IC~~-~~~~p-------v~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~---~-~l~~n  132 (150)
T 1z6u_A           76 EQSFMCVCCQE-LVYQP-------VTT-ECFHNVCKDCLQRSFKAQV----------FSCPACRHDLGQN---Y-IMIPN  132 (150)
T ss_dssp             HHHTBCTTTSS-BCSSE-------EEC-TTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT---C-CCCBC
T ss_pred             ccCCEeecCCh-hhcCC-------EEc-CCCCchhHHHHHHHHHhCC----------CcCCCCCccCCCC---C-CCCCC
Confidence            35689999999 57777       566 5999999999999997532          4899999987532   1 13345


Q ss_pred             HHHHHHHHHHHhhc
Q 023176          272 EEKQEIIDSYKSKL  285 (286)
Q Consensus       272 ~~k~~li~~yk~~~  285 (286)
                      ...+.||+.|...+
T Consensus       133 ~~l~~lv~~~~p~~  146 (150)
T 1z6u_A          133 EILQTLLDLFFPGY  146 (150)
T ss_dssp             HHHHHHHHHHSTTT
T ss_pred             HHHHHHHHHHhhHh
Confidence            66788998887654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.17  E-value=2.4e-11  Score=93.78  Aligned_cols=69  Identities=16%  Similarity=0.127  Sum_probs=53.8

Q ss_pred             ccCcccccccccccccCccccccceeecCCCC-CcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECD-HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY  269 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~-H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~  269 (286)
                      ..++..|+||++ ++.+|       ++++ || |+||..||..|+...           .+||+||..+..   . . +.
T Consensus        19 ~p~~~~CpI~~~-~m~dP-------V~~~-cG~htf~r~cI~~~l~~~-----------~~cP~~~~~l~~---~-~-L~   73 (98)
T 1wgm_A           19 ACDEFLDPIMST-LMCDP-------VVLP-SSRVTVDRSTIARHLLSD-----------QTDPFNRSPLTM---D-Q-IR   73 (98)
T ss_dssp             CCTTTBCTTTCS-BCSSE-------EECT-TTCCEEEHHHHHHHTTTS-----------CBCTTTCSBCCT---T-T-SE
T ss_pred             CcHhcCCcCccc-cccCC-------eECC-CCCeEECHHHHHHHHHhC-----------CCCCCCCCCCCh---h-h-ce
Confidence            356899999999 79998       7875 99 999999999999742           489999998752   1 1 22


Q ss_pred             CcHHHHHHHHHHHhh
Q 023176          270 TPEEKQEIIDSYKSK  284 (286)
Q Consensus       270 ~~~~k~~li~~yk~~  284 (286)
                      .+...+.+|+.|++.
T Consensus        74 pn~~Lk~~I~~~~~~   88 (98)
T 1wgm_A           74 PNTELKEKIQRWLAE   88 (98)
T ss_dssp             ECHHHHHHHHHHHHH
T ss_pred             EcHHHHHHHHHHHHH
Confidence            355677888888764

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.17  E-value=1.7e-11  Score=83.64  Aligned_cols=51  Identities=24%  Similarity=0.570  Sum_probs=39.6

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      +.+.+|+||++.+.+.    +....++ .|+|.||..||.+|....           .+||+||..+
T Consensus         3 ~~~~~C~IC~~~~~~~----~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~   53 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTS----RVVAHVL-PCGHLLHRTCYEEMLKEG-----------YRCPLCSGPS   53 (55)
T ss_dssp             SCCCSCTTTCCCCCTT----TSCEEEC-TTSCEEETTHHHHHHHHT-----------CCCTTSCCSS
T ss_pred             CCCCcCcccChhhcCC----CcCeEec-CCCCcccHHHHHHHHHcC-----------CcCCCCCCcC
Confidence            4578899999965432    2233566 599999999999999865           3899999875

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.5e-11  Score=91.41  Aligned_cols=58  Identities=22%  Similarity=0.579  Sum_probs=40.7

Q ss_pred             cCcccccccccccccC------ccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          192 SQEIECSVCLDRVLSK------PTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~------~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      .++.+|+||++.+.+.      +...+....+++.|+|.|+..||.+|...+           .+||+||+.+.+
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~~   76 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-----------NRCPLCQQDWVV   76 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-----------CBCTTTCCBCCE
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-----------CCCCCcCCCcch
Confidence            3577899999964331      000122234565799999999999999754           389999998753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.16  E-value=2e-11  Score=94.54  Aligned_cols=69  Identities=17%  Similarity=0.108  Sum_probs=54.1

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT  270 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~  270 (286)
                      ..++..|+||++ ++.+|       ++++ |||+||..||..|+...           .+||+||..+..   . . +..
T Consensus        26 ~p~~~~CpI~~~-~m~dP-------V~~~-cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~---~-~-L~p   80 (100)
T 2kre_A           26 APDEFRDPLMDT-LMTDP-------VRLP-SGTIMDRSIILRHLLNS-----------PTDPFNRQTLTE---S-M-LEP   80 (100)
T ss_dssp             CSTTTBCTTTCS-BCSSE-------EEET-TTEEEEHHHHHHHTTSC-----------SBCSSSCCBCCT---T-S-SEE
T ss_pred             CcHhhCCcCccC-cccCC-------eECC-CCCEEchHHHHHHHHcC-----------CCCCCCCCCCCh---h-h-ceE
Confidence            356899999999 79998       8886 99999999999999732           489999998652   1 1 223


Q ss_pred             cHHHHHHHHHHHhh
Q 023176          271 PEEKQEIIDSYKSK  284 (286)
Q Consensus       271 ~~~k~~li~~yk~~  284 (286)
                      +.....+|+.|++.
T Consensus        81 n~~Lk~~I~~~~~~   94 (100)
T 2kre_A           81 VPELKEQIQAWMRE   94 (100)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH
Confidence            45677888888764

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.1e-11  Score=85.75  Aligned_cols=48  Identities=38%  Similarity=0.995  Sum_probs=38.1

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC  254 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C  254 (286)
                      ...++.+|+||++ ++.+|       .++ .|||+||..||.+|+.....        ...||+|
T Consensus        16 ~~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~--------~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLD-ILQKP-------VTI-DCGHNFCLKCITQIGETSCG--------FFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCS-BCSSC-------EEC-TTSSEECHHHHHHHHHHCSS--------CCCCSCC
T ss_pred             hCccCCCCCcCCc-hhCCe-------EEe-CCCCcchHHHHHHHHHcCCC--------CCcCcCC
Confidence            3456789999999 57777       677 69999999999999985321        3589998

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.16  E-value=1.7e-11  Score=87.44  Aligned_cols=54  Identities=30%  Similarity=0.738  Sum_probs=42.0

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccC
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS  264 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~  264 (286)
                      ..+.+|+||++. +.++.      .++ .|||.||..||.+|...+           .+||+||+.+..++..
T Consensus         3 ~~~~~C~IC~~~-~~~~~------~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~   56 (68)
T 1chc_A            3 TVAERCPICLED-PSNYS------MAL-PCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVVHT   56 (68)
T ss_dssp             CCCCCCSSCCSC-CCSCE------EET-TTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEECC
T ss_pred             CCCCCCeeCCcc-ccCCc------Eec-CCCCeeHHHHHHHHHhCc-----------CcCcCCChhhHhhhhc
Confidence            457889999996 54431      455 599999999999999754           3899999998765543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.15  E-value=9.5e-12  Score=91.20  Aligned_cols=57  Identities=28%  Similarity=0.692  Sum_probs=43.1

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...++.+|+||++ ++.+|       .++ .|||+||..||.+|+.....    .......||+||..+.
T Consensus         8 ~~~~~~~C~IC~~-~~~~p-------~~l-~CgH~fC~~Ci~~~~~~~~~----~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A            8 NVQEEVTCPICLE-LLTEP-------LSL-DCGHSLCRACITVSNKEAVT----SMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCCCCEETTTTE-ECSSC-------CCC-SSSCCCCHHHHSCCCCCCSS----SCCCCCCCSSSCCCCC
T ss_pred             hcccCCCCcCCCc-ccCCe-------eEC-CCCCHHHHHHHHHHHHhccc----CCCCCCcCCCCCCcCC
Confidence            3456899999999 57776       566 59999999999999975321    1122469999999975

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.14  E-value=1.4e-11  Score=90.58  Aligned_cols=64  Identities=28%  Similarity=0.721  Sum_probs=26.0

Q ss_pred             CCCccccccc-CCCCCCCCCcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 023176           30 PPNNICTYYQ-KGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPE  108 (286)
Q Consensus        30 ~~~~~C~~f~-~G~C~~G~~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p~~~~~~~~~~~~  108 (286)
                      .++.+|++|+ +|.|.+|++|+|+|..........                                             
T Consensus        10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~---------------------------------------------   44 (77)
T 1m9o_A           10 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR---------------------------------------------   44 (77)
T ss_dssp             CCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------------
T ss_pred             ccchhCHHhhhCCCcCCCCCccCCCCChhhccccc---------------------------------------------
Confidence            5689999997 899999999999999854321100                                             


Q ss_pred             CcCCCCCCccccCCCCCCCCCCccCCh-hhhcCCCCCCCCCcccCCCC
Q 023176          109 SVCNDSLENDEVDEPRNLKPADRSICS-FAAAGNCPRGEKCPHIHGDT  155 (286)
Q Consensus       109 ~~~~s~~~~~~~~~~~~~~~~~~~lC~-y~~~G~C~~Gd~C~y~Hg~~  155 (286)
                                       ....+..+|+ |++.|.|++|++|+|+|+..
T Consensus        45 -----------------~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A           45 -----------------HPKYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             ------------------------------------------------
T ss_pred             -----------------cccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence                             0122357897 66899999999999999863

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=3e-11  Score=90.26  Aligned_cols=57  Identities=26%  Similarity=0.696  Sum_probs=42.3

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...++.+|+||++. +.+.   ++...++ .|||.||..||.+|......        ...||+||+.+.
T Consensus        11 ~~~~~~~C~IC~~~-~~~~---~~~~~~~-~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~   67 (88)
T 2ct2_A           11 ALREVLECPICMES-FTEE---QLRPKLL-HCGHTICRQCLEKLLASSIN--------GVRCPFCSKITR   67 (88)
T ss_dssp             CCCSCCBCTTTCCB-CCTT---SSCEEEC-SSSCEEEHHHHHHHHHHCSS--------CBCCTTTCCCBC
T ss_pred             hccCCCCCccCCcc-cccc---CCCeEEC-CCCChhhHHHHHHHHHcCCC--------CcCCCCCCCccc
Confidence            34567899999995 5541   1222667 59999999999999986521        259999999864

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.14  E-value=2e-11  Score=89.51  Aligned_cols=52  Identities=33%  Similarity=0.723  Sum_probs=40.2

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...+.+|+||++. +..+    ....++ .|+|.||..||.+|...+           .+||+||..+.
T Consensus        12 ~~~~~~C~IC~~~-~~~~----~~~~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~   63 (78)
T 2ect_A           12 VGSGLECPVCKED-YALG----ESVRQL-PCNHLFHDSCIVPWLEQH-----------DSCPVCRKSLT   63 (78)
T ss_dssp             SSSSCCCTTTTSC-CCTT----SCEEEC-TTSCEEETTTTHHHHTTT-----------CSCTTTCCCCC
T ss_pred             CCCCCCCeeCCcc-ccCC----CCEEEe-CCCCeecHHHHHHHHHcC-----------CcCcCcCCccC
Confidence            4567899999995 5433    233456 499999999999999643           48999999875

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.13  E-value=2.7e-11  Score=101.48  Aligned_cols=70  Identities=29%  Similarity=0.523  Sum_probs=48.2

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP  271 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~  271 (286)
                      .++..|+||++ ++.+|       +++..|||+||..||.+|+....          ..||+||..+....    .+..+
T Consensus        52 ~~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~~----~l~~~  109 (165)
T 2ckl_B           52 HSELMCPICLD-MLKNT-------MTTKECLHRFCADCIITALRSGN----------KECPTCRKKLVSKR----SLRPD  109 (165)
T ss_dssp             HHHHBCTTTSS-BCSSE-------EEETTTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCCSGG----GEEEC
T ss_pred             CCCCCCcccCh-HhhCc-------CEeCCCCChhHHHHHHHHHHhCc----------CCCCCCCCcCCCcc----cCCcC
Confidence            34678999999 56666       56656999999999999997532          58999999864211    12223


Q ss_pred             HHHHHHHHHHHh
Q 023176          272 EEKQEIIDSYKS  283 (286)
Q Consensus       272 ~~k~~li~~yk~  283 (286)
                      ..-+.||+.++.
T Consensus       110 ~~l~~~i~~~~~  121 (165)
T 2ckl_B          110 PNFDALISKIYP  121 (165)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHc
Confidence            445556666543

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.13  E-value=2.7e-11  Score=88.30  Aligned_cols=27  Identities=22%  Similarity=0.715  Sum_probs=24.7

Q ss_pred             CCCCcccccccCCCCCCCCCcccCCCC
Q 023176           29 DPPNNICTYYQKGFCSYGSRCRYEHVK   55 (286)
Q Consensus        29 ~~~~~~C~~f~~G~C~~G~~C~y~H~~   55 (286)
                      ..+..+|+||++|.|.+|++|+|+|..
T Consensus        13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~   39 (72)
T 2rhk_C           13 GEKTVVCKHWLRGLCKKGDQCEFLHEY   39 (72)
T ss_dssp             CCCCSBCHHHHTTCCCCGGGSSSBCSC
T ss_pred             CCcCeeCHHHhcCCCCCCCCCCCcccc
Confidence            356889999999999999999999986

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=6.8e-11  Score=87.26  Aligned_cols=27  Identities=22%  Similarity=0.715  Sum_probs=24.7

Q ss_pred             CCCCcccccccCCCCCCCCCcccCCCC
Q 023176           29 DPPNNICTYYQKGFCSYGSRCRYEHVK   55 (286)
Q Consensus        29 ~~~~~~C~~f~~G~C~~G~~C~y~H~~   55 (286)
                      ..+..+|+||++|.|.+|++|+|+|..
T Consensus         7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~   33 (77)
T 2d9n_A            7 GEKTVVCKHWLRGLCKKGDQCEFLHEY   33 (77)
T ss_dssp             CCTTSBCHHHHTTCCSCTTSSSSBCSC
T ss_pred             CCcceeCHhHccCcCCCCCCCCCcccc
Confidence            356789999999999999999999987

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.6e-11  Score=88.32  Aligned_cols=52  Identities=33%  Similarity=0.821  Sum_probs=40.4

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..++.+|+||++. ++.+    ....+++ |+|.||..||.+|...+           .+||+||..+.
T Consensus        20 ~~~~~~C~IC~~~-~~~~----~~~~~l~-C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~   71 (75)
T 1x4j_A           20 QSEQTLCVVCMCD-FESR----QLLRVLP-CNHEFHAKCVDKWLKAN-----------RTCPICRADSG   71 (75)
T ss_dssp             SSSCCEETTTTEE-CCBT----CEEEEET-TTEEEETTHHHHHHHHC-----------SSCTTTCCCCC
T ss_pred             cCCCCCCeECCcc-cCCC----CeEEEEC-CCCHhHHHHHHHHHHcC-----------CcCcCcCCcCC
Confidence            3567899999996 4433    2445675 99999999999999764           38999998753

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.11  E-value=9.9e-12  Score=98.01  Aligned_cols=50  Identities=28%  Similarity=0.802  Sum_probs=40.9

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      .++++|+||++ ++.+|       +++ .|||+||..||.+|.....          ..||+||+.+..
T Consensus        13 ~~~~~C~iC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICME-ILVEP-------VTL-PCNHTLCKPCFQSTVEKAS----------LCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCS-BCSSC-------EEC-TTSCEECHHHHCCCCCTTT----------SBCTTTCCBCHH
T ss_pred             CCCCCCccCCc-ccCce-------eEc-CCCCHHhHHHHHHHHhHCc----------CCCCCCCcccCc
Confidence            44688999999 56777       677 5999999999999986432          589999999763

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.11  E-value=5e-11  Score=93.64  Aligned_cols=65  Identities=20%  Similarity=0.527  Sum_probs=43.1

Q ss_pred             hccCcccccccccccccCcc----------ccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPT----------AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~----------~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ....+..|+|||+. +..+.          ......+.+..|+|.||..||.+|+.....      ....+||+||..+.
T Consensus        21 ~~~~~~~C~ICl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~------~~~~~CP~CR~~~~   93 (114)
T 1v87_A           21 KVAPEEDCIICMEK-LAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK------DGSLQCPSCKTIYG   93 (114)
T ss_dssp             SSCCSCEETTTTEE-TTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC------SSCCBCTTTCCBSS
T ss_pred             cCCCCCcCccCChh-hcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC------CCCCcCCCCCCccC
Confidence            34556799999996 43331          011122334469999999999999964321      12369999999876


Q ss_pred             cc
Q 023176          260 FV  261 (286)
Q Consensus       260 ~~  261 (286)
                      ..
T Consensus        94 ~~   95 (114)
T 1v87_A           94 EK   95 (114)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.10  E-value=3.9e-11  Score=91.01  Aligned_cols=52  Identities=29%  Similarity=0.660  Sum_probs=39.9

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..++..|+|||+.+.+.     ....+|+ |+|.||..||.+|...+           .+||+||..+.
T Consensus        37 ~~~~~~C~IC~~~~~~~-----~~~~~l~-C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~   88 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKG-----DVATELP-CHHYFHKPCVSIWLQKS-----------GTCPVCRCMFP   88 (91)
T ss_dssp             SSSCSEETTTTEECCTT-----CEEEEET-TTEEEEHHHHHHHHTTT-----------CBCTTTCCBSS
T ss_pred             cCCCCCCcccChhhcCC-----CcEEecC-CCChHHHHHHHHHHHcC-----------CcCcCcCccCC
Confidence            34678899999964432     2346675 99999999999999643           48999998753

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.10  E-value=6e-11  Score=87.68  Aligned_cols=55  Identities=31%  Similarity=0.752  Sum_probs=42.5

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..++..|+||++ .+.+|       .++ .|+|.||..||..|+.....     ......||+||..+.
T Consensus        16 ~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           16 IKEEVTCPICLE-LLKEP-------VSA-DCNHSFCRACITLNYESNRN-----TDGKGNCPVCRVPYP   70 (85)
T ss_dssp             CCTTTSCTTTCS-CCSSC-------EEC-TTSCCBCHHHHHHHHHHSBC-----TTSCBCCTTTCCCCC
T ss_pred             CccCCCCcCCCh-hhCcc-------eeC-CCCCHHHHHHHHHHHHhccC-----CCCCCCCCCCCCcCC
Confidence            356789999999 46666       566 59999999999999987421     112369999999876

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=6e-11  Score=81.70  Aligned_cols=47  Identities=40%  Similarity=0.986  Sum_probs=36.6

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC  254 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C  254 (286)
                      ..++..|+||++ .+.+|       .++ .|+|+||..||.+|+....        ....||+|
T Consensus        12 ~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLE-YLKEP-------VII-ECGHNFCKACITRWWEDLE--------RDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCC-BCSSC-------CCC-SSCCCCCHHHHHHHTTSSC--------CSCCCSCC
T ss_pred             cccCCCCccCCc-ccCcc-------EeC-CCCCccCHHHHHHHHHhcC--------CCCCCCCC
Confidence            456789999999 46666       566 5999999999999986421        13689998

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.09  E-value=3.9e-11  Score=95.07  Aligned_cols=66  Identities=23%  Similarity=0.621  Sum_probs=50.0

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP  271 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~  271 (286)
                      .+++.|+||++ ++.+|       +++..|||+||..||..|+.             ..||+||..+..  +   -+..+
T Consensus        20 ~~~~~C~IC~~-~~~~p-------v~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~~--~---~~~~n   73 (117)
T 1jm7_B           20 EKLLRCSRCTN-ILREP-------VCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAWI--Q---DLKIN   73 (117)
T ss_dssp             HHTTSCSSSCS-CCSSC-------BCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCSC--S---SCCCC
T ss_pred             hhCCCCCCCCh-HhhCc-------cEeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCcc--c---ccccc
Confidence            44789999999 67777       66646999999999999985             289999998742  1   12345


Q ss_pred             HHHHHHHHHHHh
Q 023176          272 EEKQEIIDSYKS  283 (286)
Q Consensus       272 ~~k~~li~~yk~  283 (286)
                      ..-..||+.|++
T Consensus        74 ~~l~~l~~~~~~   85 (117)
T 1jm7_B           74 RQLDSMIQLCSK   85 (117)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            566778887765

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=6.2e-11  Score=87.60  Aligned_cols=55  Identities=31%  Similarity=0.805  Sum_probs=41.7

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..++.+|+||++ ++.+|       .++ .|||.||..||.+|......     ......||+||+.+.
T Consensus        16 ~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           16 VKEEVTCPICLE-LLTQP-------LSL-DCGHSFCQACLTANHKKSML-----DKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCCTTTCS-CCSSC-------BCC-SSSCCBCTTHHHHHHHHHHH-----TTSCCCCTTTCCSSC
T ss_pred             ccCCCCCCCCCc-ccCCc-------eeC-CCCCHHHHHHHHHHHHHhhc-----CCCCCcCCCCCCccC
Confidence            456789999999 46666       566 59999999999999876210     011369999999876

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=99.06  E-value=2.4e-11  Score=92.02  Aligned_cols=53  Identities=30%  Similarity=0.627  Sum_probs=47.0

Q ss_pred             CccccccccccCCCCC-CCCCccCCCC-----CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176            4 RVLCKFFAHGACLKGE-HCEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus         4 ~~~C~~f~~G~C~~G~-~C~f~H~~~~-----~~~~~C~~f~~G~C~~G~~C~y~H~~~~   57 (286)
                      ..+|++|++|.|.+|+ .|+|+|+.+.     .+.++|.+|++|.|..+ .|+|.|..+.
T Consensus        17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~-~Cky~H~~~h   75 (89)
T 2rpp_A           17 LEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPTH   75 (89)
T ss_dssp             ECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred             hhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCC-CcceecCHHH
Confidence            5699999999999998 9999998763     35789999999999965 9999999764

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.05  E-value=6.4e-11  Score=93.94  Aligned_cols=51  Identities=25%  Similarity=0.596  Sum_probs=41.7

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...++..|+||++ ++.+|       .++ .|||+||..||.+|.....          ..||+||..+.
T Consensus        14 ~~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~   64 (118)
T 3hct_A           14 PLESKYECPICLM-ALREA-------VQT-PCGHRFCKACIIKSIRDAG----------HKCPVDNEILL   64 (118)
T ss_dssp             CCCGGGBCTTTCS-BCSSE-------EEC-TTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCC
T ss_pred             CCCCCCCCCcCCh-hhcCe-------EEC-CcCChhhHHHHHHHHhhCC----------CCCCCCCCCcC
Confidence            3456789999999 57666       566 5999999999999997643          38999999865

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.04  E-value=1.1e-10  Score=86.23  Aligned_cols=54  Identities=24%  Similarity=0.559  Sum_probs=39.7

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..++.+|+||+|.+..++    ..|..+ .|||.||..||..|+...          ...||+||+.+.
T Consensus         8 ~~~~~~CpICle~~~~~d----~~~~p~-~CGH~fC~~Cl~~~~~~~----------~~~CP~CR~~~~   61 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDD----INFFPC-TCGYQICRFCWHRIRTDE----------NGLCPACRKPYP   61 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTT----TTCCSS-TTSCCCCHHHHHHHTTSS----------CSBCTTTCCBCS
T ss_pred             cccCCcCCccCccCcccc----cccccc-CCCCCcCHHHHHHHHhcC----------CCCCCCCCCccC
Confidence            456789999999543221    233334 499999999999987542          259999999886

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.04  E-value=7.7e-11  Score=94.15  Aligned_cols=55  Identities=33%  Similarity=0.736  Sum_probs=41.6

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      +++++|+||++. +.+|..+++...++ .|||+||..||.+|++.+           .+||+||+.+.
T Consensus         5 ~~~~~C~IC~~~-~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~   59 (133)
T 4ap4_A            5 SGTVSCPICMDG-YSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN   59 (133)
T ss_dssp             CCSCBCTTTCCB-HHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTC-----------SBCTTTCCBCT
T ss_pred             CCCCCCcccChh-hhCccccccCeEec-CCCChhhHHHHHHHHHhC-----------CCCCCCCCcCc
Confidence            567899999995 55442122333455 699999999999999754           48999999986

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.03  E-value=1.3e-10  Score=91.69  Aligned_cols=47  Identities=32%  Similarity=0.750  Sum_probs=39.5

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      +..|+||++ ++.+|       .++ .|||+||..||.+|.....          ..||+||..+.
T Consensus        23 ~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~   69 (116)
T 1rmd_A           23 SISCQICEH-ILADP-------VET-SCKHLFCRICILRCLKVMG----------SYCPSCRYPCF   69 (116)
T ss_dssp             HTBCTTTCS-BCSSE-------EEC-TTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred             CCCCCCCCc-HhcCc-------EEc-CCCCcccHHHHHHHHhHCc----------CcCCCCCCCCC
Confidence            678999999 57776       566 6999999999999998642          48999999875

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.03  E-value=2.9e-11  Score=83.55  Aligned_cols=46  Identities=30%  Similarity=0.648  Sum_probs=38.0

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..++++|+||++ ++.+|       .+|+ |||+||..||.+|.              ..||+||+.+.
T Consensus         3 e~~~~~C~IC~~-~~~~p-------~~l~-CgH~fC~~Ci~~~~--------------~~CP~Cr~~~~   48 (56)
T 1bor_A            3 EFQFLRCQQCQA-EAKCP-------KLLP-CLHTLCSGCLEASG--------------MQCPICQAPWP   48 (56)
T ss_dssp             SCCCSSCSSSCS-SCBCC-------SCST-TSCCSBTTTCSSSS--------------SSCSSCCSSSS
T ss_pred             cccCCCceEeCC-ccCCe-------EEcC-CCCcccHHHHccCC--------------CCCCcCCcEee
Confidence            456789999999 57777       6775 99999999998841              48999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.99  E-value=2.7e-10  Score=102.01  Aligned_cols=69  Identities=12%  Similarity=0.155  Sum_probs=53.9

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP  271 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~  271 (286)
                      ..+..|+||++ ++.+|       ++++ |||+||..||..|+....          .+||+||..+..   ..  +..+
T Consensus       206 ~~~~~c~i~~~-~~~dP-------v~~~-~gh~f~~~~i~~~~~~~~----------~~cP~~~~~~~~---~~--l~~n  261 (281)
T 2c2l_A          206 PDYLCGKISFE-LMREP-------CITP-SGITYDRKDIEEHLQRVG----------HFNPVTRSPLTQ---EQ--LIPN  261 (281)
T ss_dssp             CSTTBCTTTCS-BCSSE-------EECS-SCCEEETTHHHHHHHHTC----------SSCTTTCCCCCG---GG--CEEC
T ss_pred             CcccCCcCcCC-HhcCC-------eECC-CCCEECHHHHHHHHHHCC----------CCCcCCCCCCch---hc--Cccc
Confidence            46899999999 78888       7886 999999999999997643          259999998751   11  2235


Q ss_pred             HHHHHHHHHHHhh
Q 023176          272 EEKQEIIDSYKSK  284 (286)
Q Consensus       272 ~~k~~li~~yk~~  284 (286)
                      ..-..+|+.|.+.
T Consensus       262 ~~l~~~i~~~~~~  274 (281)
T 2c2l_A          262 LAMKEVIDAFISE  274 (281)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            5678899998764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=6.6e-11  Score=84.90  Aligned_cols=50  Identities=38%  Similarity=0.907  Sum_probs=39.3

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      +..++..|+||++. +.+        .++ .|+|.||..||.+|....           ..||+||..+..
T Consensus        11 ~~~~~~~C~IC~~~-~~~--------~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~   60 (70)
T 2ecn_A           11 QLTDEEECCICMDG-RAD--------LIL-PCAHSFCQKCIDKWSDRH-----------RNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCCCCSSSCCS-CCS--------EEE-TTTEEECHHHHHHSSCCC-----------SSCHHHHHCTTC
T ss_pred             cCCCCCCCeeCCcC-ccC--------ccc-CCCCcccHHHHHHHHHCc-----------CcCCCcCCcccC
Confidence            34567899999995 332        566 499999999999998632           589999998763

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.98  E-value=1.4e-10  Score=95.11  Aligned_cols=50  Identities=30%  Similarity=0.709  Sum_probs=41.0

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      ...++.+|+||++ ++.+|       +.+ .|||.||..||.+|+....          ..||+||...
T Consensus        27 ~l~~~~~C~IC~~-~~~~p-------v~~-~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~   76 (141)
T 3knv_A           27 KLEAKYLCSACRN-VLRRP-------FQA-QCGHRYCSFCLASILSSGP----------QNCAACVHEG   76 (141)
T ss_dssp             GCCGGGBCTTTCS-BCSSE-------EEC-TTSCEEEHHHHHHHGGGSC----------EECHHHHHTT
T ss_pred             cCCcCcCCCCCCh-hhcCc-------EEC-CCCCccCHHHHHHHHhcCC----------CCCCCCCCcc
Confidence            4567899999999 67776       555 6999999999999997532          4899999975

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.97  E-value=3.6e-10  Score=88.41  Aligned_cols=56  Identities=23%  Similarity=0.568  Sum_probs=40.1

Q ss_pred             cCcccccccccccccCc-----------cccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          192 SQEIECSVCLDRVLSKP-----------TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~-----------~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      .++.+|+||++.+ +.+           ...+....++ .|+|.|+..||..|...+           .+||+||+.+.+
T Consensus        35 ~~~d~CaIC~~~~-~~~c~~C~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~~-----------~~CP~Cr~~~~~  101 (106)
T 3dpl_R           35 IVVDNCAICRNHI-MDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTR-----------QVCPLDNREWEF  101 (106)
T ss_dssp             SCSCCCSSSCSCT-TSCCTTHHHHTTCC---CCCEEEE-TTSCEEEHHHHHHHHTTC-----------SBCSSSCSBCCE
T ss_pred             CCCCCCccCChhH-hCcCchhhccccccCCccceEeec-ccCcEECHHHHHHHHHcC-----------CcCcCCCCccee
Confidence            3578899999964 433           1112233445 599999999999999753           489999998653

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.93  E-value=2.3e-09  Score=91.29  Aligned_cols=69  Identities=10%  Similarity=0.138  Sum_probs=53.4

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP  271 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~  271 (286)
                      .++..|+||++ ++.+|       ++++ |||+||..||..|+....          .+||+||..+..   . . +..+
T Consensus       104 p~~f~CPI~~e-lm~DP-------V~~~-~Ghtfer~~I~~~l~~~~----------~tcP~t~~~l~~---~-~-L~pN  159 (179)
T 2f42_A          104 PDYLCGKISFE-LMREP-------CITP-SGITYDRKDIEEHLQRVG----------HFDPVTRSPLTQ---D-Q-LIPN  159 (179)
T ss_dssp             CGGGBCTTTCS-BCSSE-------EECT-TSCEEEHHHHHHHHHHTC----------SBCTTTCCBCCG---G-G-CEEC
T ss_pred             cHhhcccCccc-cCCCC-------eECC-CCCEECHHHHHHHHHhCC----------CCCCCCcCCCCh---h-h-Ccch
Confidence            56799999999 79998       7885 999999999999997642          279999998752   1 1 2234


Q ss_pred             HHHHHHHHHHHhh
Q 023176          272 EEKQEIIDSYKSK  284 (286)
Q Consensus       272 ~~k~~li~~yk~~  284 (286)
                      ..-..+|+.|++.
T Consensus       160 ~~Lk~~Ie~~~~~  172 (179)
T 2f42_A          160 LAMKEVIDAFIQE  172 (179)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5577788888754

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.91  E-value=6.2e-10  Score=80.58  Aligned_cols=59  Identities=29%  Similarity=0.610  Sum_probs=46.5

Q ss_pred             CCcccccccCCCCCCCC-CcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 023176           31 PNNICTYYQKGFCSYGS-RCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPES  109 (286)
Q Consensus        31 ~~~~C~~f~~G~C~~G~-~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p~~~~~~~~~~~~~  109 (286)
                      +..+|++|++|.|.+|+ .|+|+|........                                                
T Consensus         5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~------------------------------------------------   36 (70)
T 3d2q_A            5 RLEVCREYQRGNCNRGENDCRFAHPADSTMID------------------------------------------------   36 (70)
T ss_dssp             EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCB------------------------------------------------
T ss_pred             cchhCHHHhcCCCCCCCCCCCCccCccccccc------------------------------------------------
Confidence            35799999999999999 59999987431100                                                


Q ss_pred             cCCCCCCccccCCCCCCCCCCccCChhhhcCCCCCCCCCcccCCC
Q 023176          110 VCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGD  154 (286)
Q Consensus       110 ~~~s~~~~~~~~~~~~~~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~  154 (286)
                                      ..+...++|.+|++|.|.+| +|+|+|+.
T Consensus        37 ----------------~~~~~~~vC~~flkG~C~r~-~C~y~H~~   64 (70)
T 3d2q_A           37 ----------------TNDNTVTVCMDYIKGRCSRE-KCKYFHPP   64 (70)
T ss_dssp             ----------------TTTTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred             ----------------ccCCcceeccccCcCCCCCC-CcCeeCCH
Confidence                            01234688999999999999 99999976

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.91  E-value=3.8e-10  Score=80.12  Aligned_cols=56  Identities=18%  Similarity=0.479  Sum_probs=40.9

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP  263 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p  263 (286)
                      .++++.+|.|||+. ..++     .|..++ |||. ||..|+.+|+...           ..||+||+.+..+++
T Consensus         4 ~~~~~~~C~IC~~~-~~~~-----~~~~~p-CgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~   60 (64)
T 2vje_A            4 PLNAIEPCVICQGR-PKNG-----CIVHGK-TGHLMACFTCAKKLKKRN-----------KPCPVCRQPIQMIVL   60 (64)
T ss_dssp             -CGGGSCCTTTSSS-CSCE-----EEEETT-EEEEEECHHHHHHHHHTT-----------CCCTTTCCCCCEEEE
T ss_pred             CCCCcCCCCcCCCC-CCCE-----EEECCC-CCChhhHHHHHHHHHHcC-----------CcCCCcCcchhceEe
Confidence            45677899999995 3332     122225 9999 8999999999643           489999999876653

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.88  E-value=3.8e-10  Score=82.26  Aligned_cols=47  Identities=28%  Similarity=0.669  Sum_probs=37.9

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      .++..|+||++. +.++       +++ .|||. ||..||..|               ..||+||+.+..++
T Consensus        22 ~~~~~C~iC~~~-~~~~-------~~~-pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~   69 (74)
T 4ic3_A           22 QEEKLCKICMDR-NIAI-------VFV-PCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQ   69 (74)
T ss_dssp             HHHTBCTTTSSS-BCCE-------EEE-TTCCBCCCHHHHTTC---------------SBCTTTCCBCSEEE
T ss_pred             ccCCCCCCCCCC-CCCE-------EEc-CCCChhHHHHhhhcC---------------ccCCCcCcCccCcE
Confidence            346789999995 5555       667 59999 999999998               18999999987554

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=5.7e-10  Score=86.02  Aligned_cols=60  Identities=27%  Similarity=0.572  Sum_probs=47.8

Q ss_pred             CCcccccccCCCCCCCC-CcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 023176           31 PNNICTYYQKGFCSYGS-RCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPES  109 (286)
Q Consensus        31 ~~~~C~~f~~G~C~~G~-~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p~~~~~~~~~~~~~  109 (286)
                      +..+|++|++|.|..|+ .|+|+|........                                                
T Consensus        19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~------------------------------------------------   50 (98)
T 2e5s_A           19 KLEVCREFQRGNCARGETDCRFAHPADSTMID------------------------------------------------   50 (98)
T ss_dssp             EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCC------------------------------------------------
T ss_pred             hhhhhHHHhcCcCCCCCCCCCCcCCchhcccc------------------------------------------------
Confidence            46899999999999999 79999997432100                                                


Q ss_pred             cCCCCCCccccCCCCCCCCCCccCChhhhcCCCCCCCCCcccCCCC
Q 023176          110 VCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT  155 (286)
Q Consensus       110 ~~~s~~~~~~~~~~~~~~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~  155 (286)
                                      ......++|.+|++|.|.+| +|+|.|+..
T Consensus        51 ----------------~~~~~~~vC~~flkG~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           51 ----------------TSDNTVTVCMDYIKGRCMRE-KCKYFHPPA   79 (98)
T ss_dssp             ----------------TTTCEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred             ----------------ccCCccccchhhccCCCCCC-CcCccCChH
Confidence                            01234688999999999999 999999763

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.84  E-value=1.1e-09  Score=87.38  Aligned_cols=56  Identities=32%  Similarity=0.717  Sum_probs=42.1

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ..++..|+||++. ++++....+...++ .|||.||..||.+|.+..           ++||+||..+.
T Consensus        69 ~~~~~~C~iC~~~-~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~  124 (133)
T 4ap4_A           69 GSGTVSCPICMDG-YSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN  124 (133)
T ss_dssp             SSSSCBCTTTCCB-HHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHHC-----------SBCTTTCCBCC
T ss_pred             CCCCCCCCCCCCc-cccccccCcceEeC-CCCChhhHHHHHHHHHcC-----------CCCCCCCCcCC
Confidence            3567899999995 55442223333455 699999999999999764           49999999865

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.82  E-value=2e-09  Score=96.27  Aligned_cols=73  Identities=19%  Similarity=0.296  Sum_probs=52.9

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccC--CCccccccccCcee
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKLSYFVIPSVIW  267 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~--CR~~~~~~~p~~~~  267 (286)
                      ....++.|+||++ ++.+|       +++..|||+||..||.+|+....         ...||+  ||+.+.   .... 
T Consensus       177 ~~~~el~CPIcl~-~f~DP-------Vts~~CGHsFcR~cI~~~~~~~~---------~~~CPvtGCr~~l~---~~dL-  235 (267)
T 3htk_C          177 GGKIELTCPITCK-PYEAP-------LISRKCNHVFDRDGIQNYLQGYT---------TRDCPQAACSQVVS---MRDF-  235 (267)
T ss_dssp             SSBCCSBCTTTSS-BCSSE-------EEESSSCCEEEHHHHHHHSTTCS---------CEECSGGGCSCEEC---GGGE-
T ss_pred             CCceeeECcCccC-cccCC-------eeeCCCCCcccHHHHHHHHHhCC---------CCCCCcccccCcCc---hhhC-
Confidence            3466899999999 68888       66547999999999999997532         258999  999754   2222 


Q ss_pred             eCCcHHHHHHHHHHHhh
Q 023176          268 YYTPEEKQEIIDSYKSK  284 (286)
Q Consensus       268 ~~~~~~k~~li~~yk~~  284 (286)
                      + .+..-..+|+.++.+
T Consensus       236 ~-pN~~L~~lve~~k~r  251 (267)
T 3htk_C          236 V-RDPIMELRCKIAKMK  251 (267)
T ss_dssp             E-ECHHHHHHHHHHHHH
T ss_pred             C-cCHHHHHHHHHHHHH
Confidence            2 234566677777654

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.82  E-value=2.7e-09  Score=100.72  Aligned_cols=53  Identities=26%  Similarity=0.613  Sum_probs=41.6

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV  261 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~  261 (286)
                      ..+.+.+|+||++. +.+|       +++ .|||.||..||..|.....          ..||+||..+...
T Consensus       328 ~~~~~~~C~ICle~-~~~p-------v~l-pCGH~FC~~Ci~~wl~~~~----------~~CP~CR~~i~~~  380 (389)
T 2y1n_A          328 MGSTFQLCKICAEN-DKDV-------KIE-PCGHLMCTSCLTSWQESEG----------QGCPFCRCEIKGT  380 (389)
T ss_dssp             TTTSSSBCTTTSSS-BCCE-------EEE-TTCCEECHHHHHHHHHHTC----------SBCTTTCCBCCEE
T ss_pred             hcCCCCCCCccCcC-CCCe-------EEe-CCCChhhHHHHHHHHhcCC----------CCCCCCCCccCCc
Confidence            44456899999995 5555       566 5999999999999997422          5899999988643

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.81  E-value=5.7e-10  Score=88.72  Aligned_cols=56  Identities=21%  Similarity=0.564  Sum_probs=1.0

Q ss_pred             CcccccccccccccCccc----------cccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          193 QEIECSVCLDRVLSKPTA----------AERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~----------~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      .+.+|+||++.+.+ +-.          .+..-.++..|+|.|+..||..|...+           .+||+||..+.+
T Consensus        47 ~~d~CaICl~~~~~-~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-----------~~CP~Cr~~~~~  112 (117)
T 4a0k_B           47 VVDNCAICRNHIMD-LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREWEF  112 (117)
T ss_dssp             CC----------------------------------------------------------------------------
T ss_pred             CCCcCeECChhhcC-cChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-----------CcCCCCCCeeee
Confidence            45789999996543 210          111113334699999999999999764           489999998653

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.80  E-value=1.5e-09  Score=76.78  Aligned_cols=54  Identities=28%  Similarity=0.552  Sum_probs=39.7

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      .+.+..|.||||.. .++     .+.++| |||. ||..|+.+|+...           ..||+||+.+..++
T Consensus         4 ~~~~~~C~IC~~~~-~~~-----~~~~~p-CgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i   58 (63)
T 2vje_B            4 QNLLKPCSLCEKRP-RDG-----NIIHGR-TGHLVTCFHCARRLKKAG-----------ASCPICKKEIQLVI   58 (63)
T ss_dssp             GGGGSBCTTTSSSB-SCE-----EEEETT-EEEEEECHHHHHHHHHTT-----------CBCTTTCCBCCEEE
T ss_pred             CCcCCCCcccCCcC-CCe-----EEEecC-CCCHhHHHHHHHHHHHhC-----------CcCCCcCchhhceE
Confidence            34567899999953 222     222235 9998 9999999998643           48999999987655

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.79  E-value=1.2e-09  Score=82.98  Aligned_cols=57  Identities=23%  Similarity=0.583  Sum_probs=39.1

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccC--CCcc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKL  257 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~--CR~~  257 (286)
                      ++..+|+||++. +..+     .+..|..|||.||.+||++++..+-..+   ......||.  ||..
T Consensus         3 ~~~~~C~IC~~~-~~~~-----~~~~l~~CgH~FC~~Cl~~~~~~~i~~g---~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            3 SGSSGCKLCLGE-YPVE-----QMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPKQ   61 (94)
T ss_dssp             CSBCCCSSSCCC-CBGG-----GEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSSC
T ss_pred             CCCcCCcccCcc-cccc-----cceEcCCCCCcccHHHHHHHHHHHhhcC---CcccccCccccCCCC
Confidence            467899999995 4433     2233446999999999999887532111   011359999  9987

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.79  E-value=2.3e-09  Score=89.95  Aligned_cols=51  Identities=25%  Similarity=0.596  Sum_probs=41.7

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...+++.|+||++ ++.+|       .++ .|||+||..||.+|+..+.          ..||+||..+.
T Consensus        14 ~~~~~~~C~IC~~-~~~~p-------v~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~   64 (170)
T 3hcs_A           14 PLESKYECPICLM-ALREA-------VQT-PCGHRFCKACIIKSIRDAG----------HKCPVDNEILL   64 (170)
T ss_dssp             CCCGGGBCTTTCS-BCSSE-------EEC-TTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCC
T ss_pred             CCCCCCCCCCCCh-hhcCc-------EEC-CCCCHHHHHHHHHHHHhCC----------CCCCCCccCcc
Confidence            3456799999999 57776       566 5999999999999997643          38999999865

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.78  E-value=3.6e-09  Score=79.06  Aligned_cols=58  Identities=24%  Similarity=0.549  Sum_probs=46.5

Q ss_pred             CCcccccccCCCCCCCC-CcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 023176           31 PNNICTYYQKGFCSYGS-RCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPES  109 (286)
Q Consensus        31 ~~~~C~~f~~G~C~~G~-~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p~~~~~~~~~~~~~  109 (286)
                      +..+|++|++|.|..|+ .|+|+|.......                                                 
T Consensus         8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~-------------------------------------------------   38 (83)
T 3d2n_A            8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQV-------------------------------------------------   38 (83)
T ss_dssp             EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE-------------------------------------------------
T ss_pred             cchhcHHHhcCCCCCCCCCCCCcCCCccccc-------------------------------------------------
Confidence            45799999999999997 9999999743110                                                 


Q ss_pred             cCCCCCCccccCCCCCCCCCCccCChhhhcCCCCCCCCCcccCCCC
Q 023176          110 VCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT  155 (286)
Q Consensus       110 ~~~s~~~~~~~~~~~~~~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~  155 (286)
                                       .....++|.+|++|.|.++ +|+|.|+..
T Consensus        39 -----------------~~~~~~vC~dflkG~C~r~-~C~y~H~~~   66 (83)
T 3d2n_A           39 -----------------ENGRVIACFDSLKGRCSRE-NCKYLHPPP   66 (83)
T ss_dssp             -----------------ETTEEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred             -----------------cCCceeehhHhhhccccCC-CcceeCChH
Confidence                             0123578999999999998 899999874

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=1.7e-09  Score=78.90  Aligned_cols=46  Identities=28%  Similarity=0.682  Sum_probs=35.7

Q ss_pred             CcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      ++.+|+||++. +.++       +++ .|||. ||..||..+               ..||+||..+..++
T Consensus        24 ~~~~C~IC~~~-~~~~-------~~~-pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~   70 (75)
T 2ecg_A           24 EEKLCKICMDR-NIAI-------VFV-PCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQ   70 (75)
T ss_dssp             HHHSCSSSCSS-CCCB-------CCS-SSCCCCBCHHHHHHC---------------SBCTTTCCBCCCCC
T ss_pred             CCCCCCcCCCC-CCCE-------EEe-cCCCHHHHHHHhhCC---------------CCCccCCceecCcE
Confidence            35679999995 5555       566 59999 999999532               38999999987544

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.74  E-value=6e-09  Score=78.75  Aligned_cols=70  Identities=23%  Similarity=0.455  Sum_probs=52.9

Q ss_pred             CCCCCCccCCCCCCCcccccccCCCCCCCC-CcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q 023176           18 GEHCEFSHDWKDPPNNICTYYQKGFCSYGS-RCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRP   96 (286)
Q Consensus        18 G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~-~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p   96 (286)
                      |..+.+.++.. .+..+|++|++|.|..|+ .|+|+|.......                                    
T Consensus         4 ~~~~~~~~~~~-~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v------------------------------------   46 (89)
T 2rpp_A            4 GSSGPVRDTKW-LTLEVCRQFQRGTCSRSDEECKFAHPPKSCQV------------------------------------   46 (89)
T ss_dssp             CCCSCCCSCSS-SEECBCHHHHHTCCCCCTTTSSSBCCCSSSCC------------------------------------
T ss_pred             cccccccCCCc-chhhhchHHhcCCCCCCCCCCCCcCCCccccc------------------------------------
Confidence            55666666532 246799999999999998 9999999743110                                    


Q ss_pred             CCCCCCCCCCCCCcCCCCCCccccCCCCCCCCCCccCChhhhcCCCCCCCCCcccCCCC
Q 023176           97 FLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT  155 (286)
Q Consensus        97 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~  155 (286)
                                                    .....++|.+|++|.|.++ .|+|.|+..
T Consensus        47 ------------------------------~~~~~~vC~dflkG~C~r~-~Cky~H~~~   74 (89)
T 2rpp_A           47 ------------------------------ENGRVIACFDSLKGRCSRE-NCKYLHPPT   74 (89)
T ss_dssp             ------------------------------BTTBEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred             ------------------------------cCCceeeehhhhhCcCCCC-CcceecCHH
Confidence                                          0123577999999999997 899999864

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.69  E-value=2.7e-09  Score=78.85  Aligned_cols=46  Identities=28%  Similarity=0.717  Sum_probs=36.7

Q ss_pred             CcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      ++..|.||++. ..++       ++++ |||. ||..|+..|+               .||+||..+..++
T Consensus        17 ~~~~C~IC~~~-~~~~-------v~~p-CgH~~~C~~C~~~~~---------------~CP~Cr~~i~~~~   63 (79)
T 2yho_A           17 EAMLCMVCCEE-EINS-------TFCP-CGHTVCCESCAAQLQ---------------SCPVCRSRVEHVQ   63 (79)
T ss_dssp             HHTBCTTTSSS-BCCE-------EEET-TCBCCBCHHHHTTCS---------------BCTTTCCBCCEEE
T ss_pred             CCCEeEEeCcc-cCcE-------EEEC-CCCHHHHHHHHHhcC---------------cCCCCCchhhCeE
Confidence            35689999995 4444       6674 9999 9999998763               7999999988554

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=1e-08  Score=76.02  Aligned_cols=55  Identities=22%  Similarity=0.484  Sum_probs=40.6

Q ss_pred             hccCcccccccccccccCccccccceeecCCCC-----CcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~-----H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      ..+++..|.||++. ++..    .. .++| |+     |.|+..||.+|...+.         ..+||+||..+.+
T Consensus        11 ~~~~~~~C~IC~~~-~~~~----~~-l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~~~   70 (80)
T 2d8s_A           11 TPSSQDICRICHCE-GDDE----SP-LITP-CHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEFIM   70 (80)
T ss_dssp             CCTTSCCCSSSCCC-CCSS----SC-EECS-SSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBCCC
T ss_pred             CCCCCCCCeEcCcc-ccCC----Ce-eEec-cccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCeeec
Confidence            34567899999985 4321    12 3565 86     9999999999998753         2599999998753

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=2.9e-08  Score=71.24  Aligned_cols=49  Identities=27%  Similarity=0.731  Sum_probs=37.3

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      .+.++..|.|||+. ..++       +++ .|+|. ||..|+...               ..||+||..+..++
T Consensus        11 ~~~~~~~C~IC~~~-~~~~-------v~~-pCgH~~~C~~C~~~~---------------~~CP~CR~~i~~~~   60 (68)
T 2ea5_A           11 SEENSKDCVVCQNG-TVNW-------VLL-PCRHTCLCDGCVKYF---------------QQCPMCRQFVQESF   60 (68)
T ss_dssp             SCCCSSCCSSSSSS-CCCC-------EET-TTTBCCSCTTHHHHC---------------SSCTTTCCCCCCEE
T ss_pred             cCCCCCCCCCcCcC-CCCE-------EEE-CCCChhhhHHHHhcC---------------CCCCCCCcchhceE
Confidence            34567899999995 3333       566 59999 999999831               48999999987554

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=7.8e-08  Score=70.21  Aligned_cols=54  Identities=19%  Similarity=0.483  Sum_probs=41.0

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccC
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS  264 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~  264 (286)
                      ..+|.||.+.|+..        ..-+.|+|.|...||.+|+++++.         .+||+||....+-+|.
T Consensus        15 i~~C~IC~~~i~~g--------~~C~~C~h~fH~~Ci~kWl~~~~~---------~~CP~Cr~~w~~~~~~   68 (74)
T 2ct0_A           15 VKICNICHSLLIQG--------QSCETCGIRMHLPCVAKYFQSNAE---------PRCPHCNDYWPHEIPK   68 (74)
T ss_dssp             SCBCSSSCCBCSSS--------EECSSSCCEECHHHHHHHSTTCSS---------CCCTTTCSCCCSCCCC
T ss_pred             CCcCcchhhHcccC--------CccCCCCchhhHHHHHHHHHhcCC---------CCCCCCcCcCCCCCCC
Confidence            47899999966532        122269999999999999976532         4899999988766554

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.41  E-value=2.9e-07  Score=80.14  Aligned_cols=49  Identities=35%  Similarity=0.733  Sum_probs=37.3

Q ss_pred             ccccccccccCC----CCCCCCCccCCCC-------------------------CC-----CcccccccCC-----CCCC
Q 023176            5 VLCKFFAHGACL----KGEHCEFSHDWKD-------------------------PP-----NNICTYYQKG-----FCSY   45 (286)
Q Consensus         5 ~~C~~f~~G~C~----~G~~C~f~H~~~~-------------------------~~-----~~~C~~f~~G-----~C~~   45 (286)
                      .+||||+-|.|+    .+..|+|+|++.+                         ++     ..+|.+| +|     .|.+
T Consensus        90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~~  168 (229)
T 3u9g_A           90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCGQ  168 (229)
T ss_dssp             CCCHHHHTTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCSS
T ss_pred             eechhhhcCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCCC
Confidence            589999999993    4578999999864                         11     4689999 75     7887


Q ss_pred             CCCcccCCC
Q 023176           46 GSRCRYEHV   54 (286)
Q Consensus        46 G~~C~y~H~   54 (286)
                      ++.|...|.
T Consensus       169 ~~~C~kLHI  177 (229)
T 3u9g_A          169 PQPCERLHI  177 (229)
T ss_dssp             SSCCCSBCS
T ss_pred             CCCCcceec
Confidence            777776665

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.34  E-value=7.9e-08  Score=89.74  Aligned_cols=47  Identities=32%  Similarity=0.778  Sum_probs=38.4

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI  262 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~  262 (286)
                      .++..|+||++. +.+|       +++ .|||. ||..||..|               ..||+||..+..++
T Consensus       293 ~~~~~C~IC~~~-~~~~-------v~l-pCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~~  340 (345)
T 3t6p_A          293 QEERTCKVCMDK-EVSV-------VFI-PCGHLVVCQECAPSL---------------RKCPICRGIIKGTV  340 (345)
T ss_dssp             HTTCBCTTTSSS-BCCE-------EEE-TTCCEEECTTTGGGC---------------SBCTTTCCBCCEEE
T ss_pred             cCCCCCCccCCc-CCce-------EEc-CCCChhHhHHHHhcC---------------CcCCCCCCCccCeE
Confidence            457899999995 5555       677 49999 999999988               17999999987554

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.33  E-value=2.7e-07  Score=70.52  Aligned_cols=47  Identities=23%  Similarity=0.604  Sum_probs=35.8

Q ss_pred             ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176          197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV  261 (286)
Q Consensus       197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~  261 (286)
                      |.+|-=.|..        ||.+..|.|+||++|+..|.+.++          ++||+||..+..|
T Consensus         4 C~~C~~Pi~i--------ygRmIPCkHvFCydCa~~~~~~~~----------k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            4 CDKCGLPIKV--------YGRMIPCKHVFCYDCAILHEKKGD----------KMCPGCSDPVQRI   50 (101)
T ss_dssp             CTTTCSBCSE--------EEEEETTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCSEE
T ss_pred             cCccCCCeEE--------EeeeccccccHHHHHHHHHHhccC----------CCCcCcCCeeeee
Confidence            6667654433        344446999999999999997654          5999999998754

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.25  E-value=4.4e-07  Score=63.67  Aligned_cols=52  Identities=15%  Similarity=0.212  Sum_probs=41.8

Q ss_pred             cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc--ccccC
Q 023176          194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS  264 (286)
Q Consensus       194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~--~~~p~  264 (286)
                      ...|+|+++ ++++|       ++++.+||+|+..||.+|....           .+||+.++...  -++|.
T Consensus         3 ~~~CpIs~~-~m~dP-------V~~~~sG~~yer~~I~~~l~~~-----------~~cP~t~~~L~~~~Lip~   56 (61)
T 2bay_A            3 HMLCAISGK-VPRRP-------VLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEI   56 (61)
T ss_dssp             -CCCTTTCS-CCSSE-------EEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEEC
T ss_pred             eEEecCCCC-CCCCC-------EEeCCCCcEEcHHHHHHHHHhC-----------CCCcCCcCCCChhhcEEC
Confidence            467999999 78888       7774699999999999999753           26999999874  44444

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.07  E-value=3.1e-06  Score=59.10  Aligned_cols=52  Identities=23%  Similarity=0.525  Sum_probs=38.0

Q ss_pred             ccCcccccccccccccCccccccceeecC-CCCC---cCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLS-ECDH---PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~-~C~H---~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      .+++..|.||++. .+.+       .++| +|.|   .|..+||.+|...+..         .+||+||..+.
T Consensus         3 ~~~~~~CrIC~~~-~~~~-------l~~PC~C~gs~~~~H~~Cl~~W~~~~~~---------~~C~~C~~~~~   58 (60)
T 1vyx_A            3 DEDVPVCWICNEE-LGNE-------RFRACGCTGELENVHRSCLSTWLTISRN---------TACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEE-CSCC-------CCCSCCCSSGGGSCCHHHHHHHHHHHTC---------SBCTTTCCBCC
T ss_pred             CCCCCEeEEeecC-CCCc-------eecCcCCCCchhhhHHHHHHHHHHhCCC---------CccCCCCCeee
Confidence            4567899999995 2222       2555 2444   8999999999986432         59999999875

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.96  E-value=2.1e-06  Score=79.46  Aligned_cols=66  Identities=15%  Similarity=0.394  Sum_probs=41.0

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ...+|+||++.+.+...--+..- -.+.|+|.|...||.+|..+.......-..+...||.||....
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C-~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSC-DNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCC-SCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CCccCcccceeecCCCCCccccc-cCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            34689999997655221000111 1236999999999999997532111112334579999999754

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.36  E-value=0.00019  Score=51.12  Aligned_cols=26  Identities=38%  Similarity=0.838  Sum_probs=23.2

Q ss_pred             CccCChhhhcCCCCCCCCCcccCCCC
Q 023176          130 DRSICSFAAAGNCPRGEKCPHIHGDT  155 (286)
Q Consensus       130 ~~~lC~y~~~G~C~~Gd~C~y~Hg~~  155 (286)
                      +..||..|.+|.|+||++|+|+||..
T Consensus        19 k~~LC~~~~~G~C~~G~~C~FAHG~~   44 (69)
T 2d9m_A           19 YFSICDRYMNGTCPEGNSCKFAHGNA   44 (69)
T ss_dssp             CCSBCHHHHHSCCSSCSSCSSBSSHH
T ss_pred             CcccCcccCcCCCCCCCccCCcCCHH
Confidence            34899888999999999999999984

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.16  E-value=0.00013  Score=52.02  Aligned_cols=35  Identities=23%  Similarity=0.529  Sum_probs=21.6

Q ss_pred             CCCccCCCCCCCcccccccCCCCCCCCCcccCCCCCC
Q 023176           21 CEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus        21 C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~   57 (286)
                      -.|......  ..+|+.|++|.|.||++|.|+|....
T Consensus        11 W~~R~P~~k--~~LC~~~~~G~C~~G~~C~FAHG~~E   45 (69)
T 2d9m_A           11 WQHRFPTGY--FSICDRYMNGTCPEGNSCKFAHGNAE   45 (69)
T ss_dssp             CCCCCCCSC--CSBCHHHHHSCCSSCSSCSSBSSHHH
T ss_pred             ccccCCCCC--cccCcccCcCCCCCCCccCCcCCHHH
Confidence            334444443  46777777777777777777776644

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=96.90  E-value=0.00043  Score=60.20  Aligned_cols=44  Identities=32%  Similarity=0.699  Sum_probs=39.1

Q ss_pred             Ccccccccc-----ccCCCCCCCCCccCCCCCCCcccccccCCCCCCCCCcccCCCCCC
Q 023176            4 RVLCKFFAH-----GACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPS   57 (286)
Q Consensus         4 ~~~C~~f~~-----G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~   57 (286)
                      ..+|.+| +     |.|++++.|...|        +|++|++|.|.| .+|+-+|...+
T Consensus       151 PeiC~~Y-kG~g~~g~C~~~~~C~kLH--------IC~~Fl~G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          151 PEICKSY-KGEGRKQTCGQPQPCERLH--------ICEHFTRGNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             CCBCTTC-CCSSSCCSCSSSSCCCSBC--------SCHHHHTTCCCC-SSCSSCCCTTS
T ss_pred             chHHHHh-CCCCCCCcCCCCCCCccee--------ccchhhcCCcCC-CCccCccCccC
Confidence            4689999 6     4899999999998        699999999999 89999999744

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=95.78  E-value=0.00023  Score=52.39  Aligned_cols=42  Identities=26%  Similarity=0.644  Sum_probs=33.1

Q ss_pred             CccccccccccCCCCCCCCCccCCCCCCCcccccccCCCCCCCCCcccCCC
Q 023176            4 RVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHV   54 (286)
Q Consensus         4 ~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~   54 (286)
                      ...|+||.+  |++ ++|+|.|...   ...|+|+.  .|.+ ..|.|.|.
T Consensus         9 ~e~CKf~~~--Ctn-~~C~f~Hp~~---~~~Cr~g~--~C~~-~~C~f~HP   50 (80)
T 2lhn_A            9 LEQCKFGTH--CTN-KRCKYRHARS---HIMCREGA--NCTR-IDCLFGHP   50 (80)
Confidence            468999996  998 9999999643   35788874  7874 77999994

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=96.58  E-value=0.0041  Score=54.83  Aligned_cols=57  Identities=19%  Similarity=0.466  Sum_probs=43.0

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCce
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI  266 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~  266 (286)
                      .-..|.||.+.|...        ..=++|+|.|...|+.+|+++..         ...||.|+.....-+|..+
T Consensus       179 ~i~~C~iC~~iv~~g--------~~C~~C~~~~H~~C~~~~~~~~~---------~~~CP~C~~~W~~~~~~~~  235 (238)
T 3nw0_A          179 AVKICNICHSLLIQG--------QSCETCGIRMHLPCVAKYFQSNA---------EPRCPHCNDYWPHEIPKVF  235 (238)
T ss_dssp             TCCBCTTTCSBCSSC--------EECSSSCCEECHHHHHHHTTTCS---------SCBCTTTCCBCCSCCCCCC
T ss_pred             CCCcCcchhhHHhCC--------cccCccChHHHHHHHHHHHHhCC---------CCCCCCCCCCCCCCCCCCC
Confidence            467899999966531        22335999999999999987643         2599999998877776644

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.37  E-value=0.001  Score=50.33  Aligned_cols=34  Identities=15%  Similarity=0.569  Sum_probs=26.7

Q ss_pred             CcccccccccccccCccccccceee--cCCCCCcCcHHHHHH-HH
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGL--LSECDHPFCISCIRN-WR  234 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~--l~~C~H~fC~~Ci~~-w~  234 (286)
                      +++.|+||++.++.++       +.  + .|+|.||..||+. |.
T Consensus         2 ee~~C~~C~~~~~~~a-------v~~C~-~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDA-------VKTCV-TCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBC-------CEEET-TTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCc-------eEECC-cCChHHhHHHCHHHhc
Confidence            5789999998545554       33  5 6999999999998 54

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.35  E-value=0.0053  Score=40.57  Aligned_cols=31  Identities=45%  Similarity=0.964  Sum_probs=26.2

Q ss_pred             CCCccCC-hhhhcCCCCCCCCCcccCCCCCCC
Q 023176          128 PADRSIC-SFAAAGNCPRGEKCPHIHGDTCPT  158 (286)
Q Consensus       128 ~~~~~lC-~y~~~G~C~~Gd~C~y~Hg~~c~~  158 (286)
                      .....+| +|.+.|+|++|.+|++.|-...+.
T Consensus        17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~   48 (50)
T 2fc6_A           17 PHPTSICDNFSAYGWCPLGPQCPQSHDISGPS   48 (50)
T ss_dssp             CCCSCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred             ccccchhhhccccccCCCCCCCCccccCCCCC
Confidence            3457889 799999999999999999876653

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.87  E-value=0.0024  Score=42.19  Aligned_cols=24  Identities=29%  Similarity=0.825  Sum_probs=12.3

Q ss_pred             Cccccccc-CCCCCCCCCcccCCCC
Q 023176           32 NNICTYYQ-KGFCSYGSRCRYEHVK   55 (286)
Q Consensus        32 ~~~C~~f~-~G~C~~G~~C~y~H~~   55 (286)
                      +.+|.-|. -|+|++|.+|.++|..
T Consensus        20 ~~iC~~FSayGwCp~G~~Cp~SHDi   44 (50)
T 2fc6_A           20 TSICDNFSAYGWCPLGPQCPQSHDI   44 (50)
T ss_dssp             SCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             cchhhhccccccCCCCCCCCccccC
Confidence            34555444 3555555555555544

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=95.02  E-value=0.0077  Score=53.16  Aligned_cols=25  Identities=36%  Similarity=0.594  Sum_probs=22.5

Q ss_pred             ccCChhhhcCCCCCCCCCcccCCCC
Q 023176          131 RSICSFAAAGNCPRGEKCPHIHGDT  155 (286)
Q Consensus       131 ~~lC~y~~~G~C~~Gd~C~y~Hg~~  155 (286)
                      ..+|.||++|.|.+|++|+|.|...
T Consensus        70 ~~~C~ffakG~C~~G~~C~y~H~lP   94 (240)
T 3u1l_A           70 LFFCLFFAKGMCCLGPKCEYLHHIP   94 (240)
T ss_dssp             CSBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred             CeEcCccccCCCCCCCCCCccCCCC
Confidence            4689999999999999999999753

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=94.40  E-value=0.0087  Score=52.82  Aligned_cols=27  Identities=33%  Similarity=0.926  Sum_probs=24.4

Q ss_pred             CcccccccCCCCCCCCCcccCCCCCCC
Q 023176           32 NNICTYYQKGFCSYGSRCRYEHVKPSR   58 (286)
Q Consensus        32 ~~~C~~f~~G~C~~G~~C~y~H~~~~~   58 (286)
                      ..+|.||.+|.|.+|+.|.|.|..|..
T Consensus        70 ~~~C~ffakG~C~~G~~C~y~H~lPt~   96 (240)
T 3u1l_A           70 LFFCLFFAKGMCCLGPKCEYLHHIPDE   96 (240)
T ss_dssp             CSBCHHHHTTCCSCGGGCSSBBSCCCH
T ss_pred             CeEcCccccCCCCCCCCCCccCCCCCc
Confidence            469999999999999999999998764

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=88.54  E-value=0.079  Score=38.73  Aligned_cols=41  Identities=27%  Similarity=0.638  Sum_probs=29.7

Q ss_pred             ccccccccccCCCCCCCCCccCCCCCCCcccccccCCCCCCCCCcccCCCC
Q 023176            5 VLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVK   55 (286)
Q Consensus         5 ~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~   55 (286)
                      +.|+|+..  |++ .+|.|.|..    ...|+|+.  .|.+ ..|.|.|..
T Consensus        32 ~~Cr~g~~--C~~-~~C~f~HP~----~~~Crf~~--~C~n-~~C~F~Hp~   72 (80)
T 2lhn_A           32 IMCREGAN--CTR-IDCLFGHPI----NEDCRFGV--NCKN-IYCLFRHPP   72 (80)
Confidence            36777653  776 679999962    35688865  5774 789999965

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=88.19  E-value=0.8  Score=33.92  Aligned_cols=59  Identities=22%  Similarity=0.452  Sum_probs=45.9

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV  261 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~  261 (286)
                      ......|.||=|.|=-..  ....|+--..|+-..|..|..-=|+...          ..||+|++++...
T Consensus        13 ~~~~qiCqiCGD~VG~~~--~Ge~FVAC~eC~FPvCrpCyEYErkeG~----------q~CpqCktrYkr~   71 (93)
T 1weo_A           13 NLDGQFCEICGDQIGLTV--EGDLFVACNECGFPACRPCYEYERREGT----------QNCPQCKTRYKRL   71 (93)
T ss_dssp             CCSSCBCSSSCCBCCBCS--SSSBCCSCSSSCCCCCHHHHHHHHHTSC----------SSCTTTCCCCCCC
T ss_pred             ccCCCccccccCccccCC--CCCEEEeeeccCChhhHHHHHHHHhccC----------ccccccCCccccc
Confidence            345578999999876554  3557888889999999999987666543          4999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	0.001
d2cqea2	29	g.66.1.1 (A:429-457) Zinc finger CCCH domain-conta	0.003

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 16/63 (25%)

Query: 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI 253
            +EC+VCL  +         +   L  C H F   C+  W  S  T           CP+
Sbjct: 5   GVECAVCLAEL-----EDGEEARFLPRCGHGFHAECVDMWLGSHST-----------CPL 48

Query: 254 CRK 256
           CR 
Sbjct: 49  CRL 51

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 19/61 (31%)

Query: 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255
            C +CL+   +              C H FC  CI  W   +PT           CP+C+
Sbjct: 7   RCPICLEDPSNYSM--------ALPCLHAFCYVCITRWIRQNPT-----------CPLCK 47

Query: 256 K 256
            
Sbjct: 48  V 48

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.5 bits (74), Expect = 0.003
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 3  KRVLCKFFAHGACLKGEHCEFSHD 26
          KR LCKF+  G C + E+C + H 
Sbjct: 5  KRELCKFYITGFCARAENCPYMHG 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.36
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.33
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.33
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.32
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.31
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.31
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.3
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.28
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.27
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.24
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.2
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.14
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.12
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.04
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.84
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.63
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	98.2
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.11
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	98.06
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.92
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.92
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	97.9
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.88
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.86
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	97.13
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	96.01
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	91.04
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	88.07
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	87.45

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-13  Score=96.43  Aligned_cols=53  Identities=23%  Similarity=0.505  Sum_probs=40.8

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ++.+|+||++.++..+   +..+.++ .|||.||..||.+|.+...          .+||+||+.+.
T Consensus         2 dd~~CpIC~~~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~~~~----------~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNP---SLKLMVN-VCGHTLCESCVDLLFVRGA----------GNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCS---SCCEEEC-TTCCCEEHHHHHHHHHTTS----------SSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCC---ceEEEeC-ccChHhhHHHHHHHhCcCc----------CCCCCCCcCcc
Confidence            5789999999766543   2333444 6999999999999996542          47999999864

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=4e-13  Score=97.56  Aligned_cols=68  Identities=15%  Similarity=0.398  Sum_probs=54.1

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc--ccccCceee
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVIWY  268 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~--~~~p~~~~~  268 (286)
                      -.+++.|+||++ ++.+|       +++ .|||+||..||.+|.....          ..||.||....  .++|+    
T Consensus         5 iP~~l~CpIc~~-~m~dP-------V~~-~cgh~fc~~ci~~~~~~~~----------~~cP~~~~~l~~~~l~pN----   61 (78)
T d1t1ha_           5 FPEYFRCPISLE-LMKDP-------VIV-STGQTYERSSIQKWLDAGH----------KTCPKSQETLLHAGLTPN----   61 (78)
T ss_dssp             CSSSSSCTTTSC-CCSSE-------EEE-TTTEEEEHHHHHHHHTTTC----------CBCTTTCCBCSSCCCEEC----
T ss_pred             CCccCCCcCcCc-hhhCc-------eEc-cCCCcchHHHHHHHHHHCC----------CCCCcccccCCcccccch----
Confidence            457899999999 78888       778 4999999999999997543          48999999864  24443    


Q ss_pred             CCcHHHHHHHHHHHhh
Q 023176          269 YTPEEKQEIIDSYKSK  284 (286)
Q Consensus       269 ~~~~~k~~li~~yk~~  284 (286)
                         ...+++|+.|+++
T Consensus        62 ---~~L~~~I~~~~~~   74 (78)
T d1t1ha_          62 ---YVLKSLIALWCES   74 (78)
T ss_dssp             ---TTTHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHH
Confidence               4477789999764

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.33  E-value=2.4e-13  Score=92.45  Aligned_cols=51  Identities=33%  Similarity=0.832  Sum_probs=39.3

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      .++.+|+|||+.+.+.    + ....++.|+|.||..||.+|.+.+           .+||+||...
T Consensus         3 ed~~~C~ICl~~~~~~----~-~~~~l~~C~H~Fh~~Ci~~Wl~~~-----------~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDG----E-EARFLPRCGHGFHAECVDMWLGSH-----------STCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTT----S-CCEECSSSCCEECTTHHHHTTTTC-----------CSCSSSCCCS
T ss_pred             CCCCCCeEECccccCC----C-EEEEeCCCCCcccHHHHHHHHHhC-----------CcCCCCCCEe
Confidence            4567899999964432    2 224566799999999999999764           3899999864

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=6.1e-13  Score=97.08  Aligned_cols=70  Identities=11%  Similarity=0.137  Sum_probs=54.5

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT  270 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~  270 (286)
                      ..+++.|+||++ ++.+|       +++ .|||+||.+||.+|.....          .+||+||.....   ..  +..
T Consensus         4 iP~~l~CpIc~~-l~~dP-------v~~-~cGhtfc~~ci~~~l~~~~----------~~cP~c~~~l~~---~~--l~p   59 (80)
T d2c2la2           4 IPDYLCGKISFE-LMREP-------CIT-PSGITYDRKDIEEHLQRVG----------HFNPVTRSPLTQ---EQ--LIP   59 (80)
T ss_dssp             CCSTTBCTTTCS-BCSSE-------EEC-SSCCEEETTHHHHHHHHTC----------SSCTTTCCCCCG---GG--CEE
T ss_pred             CCccccCcCcCc-hhhhh-------ccc-CCcCeecHHHHHHHHhcCC----------ccCCCccccccc---cc--ccc
Confidence            457899999999 78888       777 5999999999999997643          489999987642   11  123


Q ss_pred             cHHHHHHHHHHHhh
Q 023176          271 PEEKQEIIDSYKSK  284 (286)
Q Consensus       271 ~~~k~~li~~yk~~  284 (286)
                      +..-+++|+.|.++
T Consensus        60 N~~L~~~I~~~l~~   73 (80)
T d2c2la2          60 NLAMKEVIDAFISE   73 (80)
T ss_dssp             CHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH
Confidence            46688899999764

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.31  E-value=1e-13  Score=98.24  Aligned_cols=52  Identities=27%  Similarity=0.717  Sum_probs=40.5

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP  263 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p  263 (286)
                      ....|+||++.+. ++       .++..|||.||..||.+|++.+           .+||+||..+..+..
T Consensus         4 ~~d~C~IC~~~~~-~~-------~~~~~C~H~Fc~~Ci~~w~~~~-----------~~CP~CR~~i~~~~~   55 (68)
T d1chca_           4 VAERCPICLEDPS-NY-------SMALPCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCCCSSCCSCCC-SC-------EEETTTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEEC
T ss_pred             CCCCCccCCcCcc-CC-------cEEeCCCCcCcHHHHHHHHHhC-----------CcCCCCCcchHhhcc
Confidence            3466999999644 33       3444699999999999999864           489999998876554

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.2e-13  Score=102.02  Aligned_cols=50  Identities=28%  Similarity=0.761  Sum_probs=40.7

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ++++|+||++ ++.+|       .+++ |||+||..||.+|+.....        ...||+||..+.
T Consensus        20 ~~l~CpIC~~-~~~~p-------v~~~-CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~   69 (103)
T d1jm7a_          20 KILECPICLE-LIKEP-------VSTK-CDHIFCKFCMLKLLNQKKG--------PSQCPLCKNDIT   69 (103)
T ss_dssp             HHTSCSSSCC-CCSSC-------CBCT-TSCCCCSHHHHHHHHSSSS--------SCCCTTTSCCCC
T ss_pred             cCcCCCccCc-hhCCe-------EEcC-CCCchhhHHHHHHHHHCCC--------CCcCcCCCCcCC
Confidence            4678999999 67777       6674 9999999999999976432        258999999874

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=4.5e-13  Score=99.26  Aligned_cols=48  Identities=31%  Similarity=0.745  Sum_probs=39.9

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ++++|+||+| ++.+|       +++ .|||+||..||.+|++.+.          ..||+||..+.
T Consensus        22 ~~l~C~IC~~-~~~~p-------v~~-~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~p~~   69 (86)
T d1rmda2          22 KSISCQICEH-ILADP-------VET-SCKHLFCRICILRCLKVMG----------SYCPSCRYPCF   69 (86)
T ss_dssp             HHTBCTTTCS-BCSSE-------EEC-TTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred             cCcCCccCCc-chhcc-------eec-CCCChhhHHHHHHHHhhCC----------CcCcccCCCCC
Confidence            3578999999 67777       666 5999999999999997653          48999999764

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.9e-12  Score=94.29  Aligned_cols=51  Identities=27%  Similarity=0.648  Sum_probs=40.5

Q ss_pred             ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      .+....|+||+|. +.++       .++ .|||.||..||.+|...+.          .+||+||..+..
T Consensus        20 ~~~~~~C~IC~~~-~~~~-------~~~-~CgH~fC~~Ci~~wl~~~~----------~~CP~Cr~~i~~   70 (79)
T d1fbva4          20 GSTFQLCKICAEN-DKDV-------KIE-PCGHLMCTSCLTSWQESEG----------QGCPFCRCEIKG   70 (79)
T ss_dssp             SCCTTBCTTTSSS-BCCE-------ECS-SSCCEECHHHHHHHHHTTC----------CSCTTTCCCCCC
T ss_pred             CCCCCCCccCCCc-CCCe-------EEe-CCCCeeeHHHHHHHHHHCc----------CcCCCCCcCccC
Confidence            4455679999994 6665       566 5999999999999997542          479999998763

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.4e-13  Score=99.76  Aligned_cols=65  Identities=23%  Similarity=0.643  Sum_probs=49.2

Q ss_pred             CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcH
Q 023176          193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPE  272 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~  272 (286)
                      ++++|+||++ ++.+|       ++++.|||+||..||.+|..             ..||+||..+..   ..  +..+.
T Consensus        21 ~~l~C~IC~~-~~~~p-------v~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~~---~~--l~~n~   74 (97)
T d1jm7b_          21 KLLRCSRCTN-ILREP-------VCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAWI---QD--LKINR   74 (97)
T ss_dssp             HTTSCSSSCS-CCSSC-------BCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCSC---SS--CCCCH
T ss_pred             hcCCCccCCc-hhhcC-------ceeCCCCCchhHHHHHHHHh-------------ccccccCCcCch---hh--CcccH
Confidence            4678999999 67777       66667999999999999983             269999987541   11  23456


Q ss_pred             HHHHHHHHHHh
Q 023176          273 EKQEIIDSYKS  283 (286)
Q Consensus       273 ~k~~li~~yk~  283 (286)
                      ..++||+.|+.
T Consensus        75 ~l~~lv~~~~~   85 (97)
T d1jm7b_          75 QLDSMIQLCSK   85 (97)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            67788888764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-12  Score=88.09  Aligned_cols=50  Identities=28%  Similarity=0.643  Sum_probs=37.6

Q ss_pred             ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      ++|+||||. ++..   +..+.++ .|||.||..||.+|.+...          .+||+||+.+.
T Consensus         1 leCpICl~~-~~~~---~~~~~~~-~CgH~~c~~C~~~w~~~~~----------~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEP-LEID---DINFFPC-TCGYQICRFCWHRIRTDEN----------GLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEE-CCGG---GTTCCSS-SSSCCCCHHHHHHHTTTSC----------CBCTTTCCBCS
T ss_pred             CCCcCCChh-hhCC---CceEEec-CCCCccchHHHHHHHhhcC----------CCCCccCCcCC
Confidence            479999996 4322   2344455 5999999999999997542          47999999864

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=1.1e-12  Score=89.34  Aligned_cols=46  Identities=17%  Similarity=0.236  Sum_probs=40.2

Q ss_pred             ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      +.|+||++ ++++|       ++++.|||+||.+||.+|...+           .+||+||+...
T Consensus         1 l~C~Ic~~-~~~~P-------v~~~~cGh~fc~~cI~~~l~~~-----------~~CP~c~~~l~   46 (56)
T d2baya1           1 MLCAISGK-VPRRP-------VLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLS   46 (56)
T ss_dssp             CCCTTTCS-CCSSE-------EEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCC
T ss_pred             CCCccCCc-hHHhc-------CccCCCCCcccHHHHHHHHhhc-----------cCCCccCCcCC
Confidence            47999999 68888       7887899999999999999864           38999999865

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=2.9e-12  Score=99.29  Aligned_cols=66  Identities=21%  Similarity=0.567  Sum_probs=45.7

Q ss_pred             HHhccCcccccccccccccCcc---------ccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          188 ALRRSQEIECSVCLDRVLSKPT---------AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       188 ~~~~~~~~~C~IC~e~i~~~~~---------~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      .++...+..|+||++.+.....         ..+..+..+..|+|.||..||.+|+..++..+      ..+||+||..+
T Consensus        19 ~~~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~------~~~CP~CR~~~   92 (114)
T d1v87a_          19 ELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDG------SLQCPSCKTIY   92 (114)
T ss_dssp             ECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSS------CCBCTTTCCBS
T ss_pred             HhcccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCC------CCccccccchh
Confidence            3456667899999997643211         11223345557999999999999998754321      35899999876


Q ss_pred             c
Q 023176          259 Y  259 (286)
Q Consensus       259 ~  259 (286)
                      .
T Consensus        93 ~   93 (114)
T d1v87a_          93 G   93 (114)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.1e-11  Score=92.24  Aligned_cols=71  Identities=15%  Similarity=0.121  Sum_probs=55.9

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY  269 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~  269 (286)
                      +..+++.|+||++ |+.+|       ++++.|+|+||..||++|+..+           ..||+||.....   +.  +.
T Consensus        18 ~~P~~f~CPI~~~-lm~dP-------V~~~~~~~ty~r~~I~~~l~~~-----------~~~P~~~~~l~~---~~--L~   73 (98)
T d1wgma_          18 DACDEFLDPIMST-LMCDP-------VVLPSSRVTVDRSTIARHLLSD-----------QTDPFNRSPLTM---DQ--IR   73 (98)
T ss_dssp             SCCTTTBCTTTCS-BCSSE-------EECTTTCCEEEHHHHHHHTTTS-----------CBCTTTCSBCCT---TT--SE
T ss_pred             CCcHHhCCcCchh-HHHHH-------HhcccccchhhHHHHHHHHHhc-----------CCcccccccccc---hh--hc
Confidence            3456899999999 79998       8998777899999999999654           389999998642   21  22


Q ss_pred             CcHHHHHHHHHHHhh
Q 023176          270 TPEEKQEIIDSYKSK  284 (286)
Q Consensus       270 ~~~~k~~li~~yk~~  284 (286)
                      .+.....+|+.|+++
T Consensus        74 pN~~Lr~~I~~~~~~   88 (98)
T d1wgma_          74 PNTELKEKIQRWLAE   88 (98)
T ss_dssp             ECHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH
Confidence            356678899999875

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.4e-12  Score=86.93  Aligned_cols=45  Identities=31%  Similarity=0.659  Sum_probs=36.4

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      .+.++|+||++ .+.+|       .+++ |||+||..||++|.              ..||+||..+.
T Consensus         4 ~~~l~C~IC~~-~~~~p-------~~lp-CgH~fC~~Ci~~~~--------------~~CP~Cr~~~~   48 (56)
T d1bora_           4 FQFLRCQQCQA-EAKCP-------KLLP-CLHTLCSGCLEASG--------------MQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCS-SCBCC-------SCST-TSCCSBTTTCSSSS--------------SSCSSCCSSSS
T ss_pred             cCCCCCcccCc-ccCCC-------EEec-CCCHHhHHHHHcCC--------------CcCcCCCCccc
Confidence            45679999999 56666       6775 99999999997652              48999999874

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.9e-11  Score=87.90  Aligned_cols=56  Identities=21%  Similarity=0.558  Sum_probs=39.4

Q ss_pred             CcccccccccccccCcccc----------ccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176          193 QEIECSVCLDRVLSKPTAA----------ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF  260 (286)
Q Consensus       193 ~~~~C~IC~e~i~~~~~~~----------~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~  260 (286)
                      .+..|+||++.+.+ +...          .....++..|+|.||..||.+|++.+           .+||+||..+.+
T Consensus        20 ~~d~C~IC~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~~   85 (88)
T d3dplr1          20 VVDNCAICRNHIMD-LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREWEF   85 (88)
T ss_dssp             CSCCCSSSCSCTTS-CCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-----------SBCSSSCSBCCE
T ss_pred             CCCcCEEccchhhC-ccccccccccccccccCCeEEccccCcccHHHHHHHHHHC-----------CcCCCCCCcccc
Confidence            46679999996433 2210          11113444699999999999999764           389999999764

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.84  E-value=7.4e-10  Score=75.91  Aligned_cols=57  Identities=21%  Similarity=0.356  Sum_probs=39.2

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY  259 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~  259 (286)
                      +..+..+|.||++. ++++.  ...- .-.+|+|.||..||.+|+..+..         .+||+||+.+.
T Consensus         2 eded~~~C~IC~~~-~~~~~--~~~c-~c~~c~h~~H~~Cl~~W~~~~~~---------~~CP~Cr~~~~   58 (60)
T d1vyxa_           2 EDEDVPVCWICNEE-LGNER--FRAC-GCTGELENVHRSCLSTWLTISRN---------TACQICGVVYN   58 (60)
T ss_dssp             TTCSCCEETTTTEE-CSCCC--CCSC-CCSSGGGSCCHHHHHHHHHHHTC---------SBCTTTCCBCC
T ss_pred             CCCCCCCCccCCcc-CCCce--eEec-ccCCCCCEEcHHHHHHHHhhCCC---------CCCcccCCeee
Confidence            34567899999996 44331  0000 11235699999999999976432         58999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.2e-09  Score=79.75  Aligned_cols=58  Identities=21%  Similarity=0.462  Sum_probs=38.2

Q ss_pred             cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176          192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS  258 (286)
Q Consensus       192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~  258 (286)
                      +....|+||++.+..     +.. ..+++|+|.||.+||.+|...+-..+   ......||.|+-..
T Consensus         3 ~~~~~C~IC~~~~~~-----~~~-~~~~~C~H~fC~~Cl~~~~~~~i~~~---~~~~i~CP~~~C~~   60 (94)
T d1wima_           3 SGSSGCKLCLGEYPV-----EQM-TTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPK   60 (94)
T ss_dssp             CSBCCCSSSCCCCBG-----GGE-EEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSS
T ss_pred             CCCCcCccCCCcccC-----Cce-EEECCCCCEeCCcCHHHHHHHHHhcC---CccccCCcCCCCCC
Confidence            456789999996432     122 34557999999999999998642111   11124899866443

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.7e-07  Score=51.44  Aligned_cols=27  Identities=48%  Similarity=1.149  Sum_probs=24.1

Q ss_pred             CCCccCChhhhcCCCCCCCCCcccCCC
Q 023176          128 PADRSICSFAAAGNCPRGEKCPHIHGD  154 (286)
Q Consensus       128 ~~~~~lC~y~~~G~C~~Gd~C~y~Hg~  154 (286)
                      +.+..+|.||..|.|.+|+.|.|+|.+
T Consensus         3 ~kkkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           3 PKKRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             chhhhhhhhheeeeecCCcCcccccCC
Confidence            446789999999999999999999964

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=6.5e-07  Score=55.88  Aligned_cols=26  Identities=35%  Similarity=0.885  Sum_probs=13.3

Q ss_pred             CCccccccc-cccCCCCCCCCCccCCC
Q 023176            3 KRVLCKFFA-HGACLKGEHCEFSHDWK   28 (286)
Q Consensus         3 k~~~C~~f~-~G~C~~G~~C~f~H~~~   28 (286)
                      |+.+|++|. .|.|.+|++|.|+|..+
T Consensus         8 KT~lC~~~~~~g~C~~G~~C~FAHg~~   34 (40)
T d1m9oa_           8 KTELCRTYSESGRCRYGAKCQFAHGLG   34 (40)
T ss_dssp             CSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred             ccccChhhhcCCcCCCCCCCCCCCCHH
Confidence            455555444 25555555555555443

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9.6e-07  Score=49.71  Aligned_cols=24  Identities=46%  Similarity=1.097  Sum_probs=14.5

Q ss_pred             CCccccccccccCCCCCCCCCccC
Q 023176            3 KRVLCKFFAHGACLKGEHCEFSHD   26 (286)
Q Consensus         3 k~~~C~~f~~G~C~~G~~C~f~H~   26 (286)
                      |+.+|+||++|-|.+|++|.|.|+
T Consensus         5 kkelCKfYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             hhhhhhhheeeeecCCcCcccccC
Confidence            445666666666666666666664

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=7.9e-07  Score=54.18  Aligned_cols=27  Identities=41%  Similarity=1.010  Sum_probs=19.1

Q ss_pred             CCccccccc-cccCCCCCCCCCccCCCC
Q 023176            3 KRVLCKFFA-HGACLKGEHCEFSHDWKD   29 (286)
Q Consensus         3 k~~~C~~f~-~G~C~~G~~C~f~H~~~~   29 (286)
                      |+.+|++|. .|.|.+|++|.|+|..++
T Consensus         5 KT~lC~~~~~~g~C~~G~~C~FAHg~~E   32 (36)
T d1rgoa1           5 KTELCRPFEESGTCKYGEKCQFAHGFHE   32 (36)
T ss_dssp             TSSBCHHHHHHSCCTTGGGCSSBSSGGG
T ss_pred             chhhCcchhcCCcCCCCCcCCCcCCHHH
Confidence            677777665 477777777777776544

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=9.8e-07  Score=53.02  Aligned_cols=26  Identities=38%  Similarity=0.787  Sum_probs=18.9

Q ss_pred             CCccccccc-cccCCCCCCCCCccCCC
Q 023176            3 KRVLCKFFA-HGACLKGEHCEFSHDWK   28 (286)
Q Consensus         3 k~~~C~~f~-~G~C~~G~~C~f~H~~~   28 (286)
                      |+.+|+.|. .|.|.+|++|.|+|+.+
T Consensus         7 KT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           7 KTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             cchhccccCCCCcCCCCCcccCcCCCC
Confidence            677787776 37788888888877653

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=3e-06  Score=52.74  Aligned_cols=32  Identities=25%  Similarity=0.683  Sum_probs=27.5

Q ss_pred             CCCCCccccccc-CCCCCCCCCcccCCCCCCCC
Q 023176           28 KDPPNNICTYYQ-KGFCSYGSRCRYEHVKPSRS   59 (286)
Q Consensus        28 ~~~~~~~C~~f~-~G~C~~G~~C~y~H~~~~~~   59 (286)
                      ...++.+|++|+ .|.|++|++|.|+|...+++
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            346789999998 69999999999999987654

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2e-06  Score=51.65  Aligned_cols=27  Identities=30%  Similarity=0.712  Sum_probs=23.2

Q ss_pred             CCccCChhh-hcCCCCCCCCCcccCCCC
Q 023176          129 ADRSICSFA-AAGNCPRGEKCPHIHGDT  155 (286)
Q Consensus       129 ~~~~lC~y~-~~G~C~~Gd~C~y~Hg~~  155 (286)
                      .++.+|+.| ..|.|+||++|.|+||..
T Consensus         6 yKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           6 YKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             ccchhccccCCCCcCCCCCcccCcCCCC
Confidence            468999655 779999999999999973

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.2e-06  Score=52.14  Aligned_cols=28  Identities=32%  Similarity=0.647  Sum_probs=23.9

Q ss_pred             CCCccCChhh-hcCCCCCCCCCcccCCCC
Q 023176          128 PADRSICSFA-AAGNCPRGEKCPHIHGDT  155 (286)
Q Consensus       128 ~~~~~lC~y~-~~G~C~~Gd~C~y~Hg~~  155 (286)
                      ..++.+|++| ..|.|++|++|+|+||..
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~   31 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFH   31 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGG
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHH
Confidence            3578999766 689999999999999975

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=6.3e-05  Score=49.25  Aligned_cols=21  Identities=43%  Similarity=1.129  Sum_probs=13.2

Q ss_pred             cccccccc-cCCCCCCCCCccC
Q 023176            6 LCKFFAHG-ACLKGEHCEFSHD   26 (286)
Q Consensus         6 ~C~~f~~G-~C~~G~~C~f~H~   26 (286)
                      +|+||..| .|..|++|+|||+
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            56666643 6666666666665

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.00081  Score=43.82  Aligned_cols=22  Identities=27%  Similarity=0.706  Sum_probs=19.1

Q ss_pred             ccccccCC-CCCCCCCcccCCCC
Q 023176           34 ICTYYQKG-FCSYGSRCRYEHVK   55 (286)
Q Consensus        34 ~C~~f~~G-~C~~G~~C~y~H~~   55 (286)
                      .|+||..| .|..|++|+|+|.+
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            59999965 89999999999954

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.077  Score=30.93  Aligned_cols=26  Identities=50%  Similarity=1.087  Sum_probs=22.1

Q ss_pred             CCCccCC-hhhhcCCCCCCCCCcccCC
Q 023176          128 PADRSIC-SFAAAGNCPRGEKCPHIHG  153 (286)
Q Consensus       128 ~~~~~lC-~y~~~G~C~~Gd~C~y~Hg  153 (286)
                      ...+.+| .|.+-|.|+.|..|+-.|.
T Consensus        10 ~~~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          10 PHPTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CCCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CCccchhhhhhhccccCCCCCCcccCc
Confidence            4456889 7889999999999998884

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.07  E-value=0.38  Score=33.59  Aligned_cols=65  Identities=22%  Similarity=0.394  Sum_probs=49.3

Q ss_pred             hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCce
Q 023176          190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI  266 (286)
Q Consensus       190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~  266 (286)
                      .......|-||-|.|--..  ....|+--..|+-..|..|..-=++...          ..||+|++++....-+..
T Consensus        12 ~~~~~q~CqiCGd~VG~~~--~Ge~FVAC~eC~FPvCrpCyEYErkeG~----------q~CpqCkt~Ykr~kgspr   76 (93)
T d1weoa_          12 KNLDGQFCEICGDQIGLTV--EGDLFVACNECGFPACRPCYEYERREGT----------QNCPQCKTRYKRLRGSPR   76 (93)
T ss_dssp             SCCSSCBCSSSCCBCCBCS--SSSBCCSCSSSCCCCCHHHHHHHHHTSC----------SSCTTTCCCCCCCTTCCC
T ss_pred             hhcccchhhhcccccccCC--CCCEEEEecccCCccchHHHHHHHhccC----------ccCcccCChhhhhcCCCC
Confidence            3455688999999876654  4568888888999999999986665432          499999999986554443

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.1  Score=30.43  Aligned_cols=24  Identities=33%  Similarity=0.959  Sum_probs=20.2

Q ss_pred             CCccccccc-CCCCCCCCCcccCCC
Q 023176           31 PNNICTYYQ-KGFCSYGSRCRYEHV   54 (286)
Q Consensus        31 ~~~~C~~f~-~G~C~~G~~C~y~H~   54 (286)
                      .+.+|.-|. -|+|.+|.+|..+|.
T Consensus        12 ~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          12 PTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             ccchhhhhhhccccCCCCCCcccCc
Confidence            477898887 699999999999886