Citrus Sinensis ID: 023185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MAASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAVSSFSYSSIPEILKYIEELILS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccHcHHcHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MAASKLVIFSLFFALILTAadvsiqgedvppltasdavdssplkIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIEthwnahgkpAMDVAIQKALEKKAqagkwvqphVETIKAVSSFSYSSIPEILKYIEELILS
Flexible Loop (DISEMBL)
MAASKLVIFSLFFALILTAADVSIQGEDVPPltasdavdssplKIELDQLKSKIRSLEshidektqelkgkdevvAQKEkaiqdkserIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLeklqkindeqkskirkteraLKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQagkwvqphVETIKavssfsyssipEILKYIEELILS
Low Complexity Region (SEG)
MAASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNlkkesekqqkekealeaRAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAVSSFSYSSIPEILKYIEELILS
Disordered region (IsUnstruct)
****KLVIFSLFFALILTAADVSIQ*********************************************************************************************************************************************************************************TEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAVSSFSYSSIPEILKYIEELI**
Disordered Region (DISOPRED)
****KLV*FSLFFALILTAADV**************************************************************************************************************************************************************************************VHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMD***************WVQPHVETIKAVSSFSYSSIPEILKYIEELILS
Disordered Region (DISEMBL)
MAASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK************LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA*************VHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALE*********QPHVETIKAVSSFSYSSIPEILKYIEELILS
Disordered Region (DISPRO)
**ASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAVSSFSYSSIPEILKYIEELILS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIExxxxxxxxxxxxxxxxxxxxxLKGKDEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAVSSFSYSSIPEILKYIEELILS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
255574131	440	conserved hypothetical protein [Ricinus	0.888	0.577	0.652	2e-88
224121216	446	predicted protein [Populus trichocarpa]	0.916	0.587	0.679	6e-87
225429824	449	PREDICTED: uncharacterized protein LOC10	0.923	0.587	0.617	3e-84
224115694	447	predicted protein [Populus trichocarpa]	0.919	0.588	0.652	8e-84
363806748	446	uncharacterized protein LOC100781922 pre	0.895	0.573	0.606	5e-82
217074086	404	unknown [Medicago truncatula]	0.881	0.623	0.606	3e-80
357466595	439	hypothetical protein MTR_3g109330 [Medic	0.881	0.574	0.606	6e-80
388521969	435	unknown [Lotus japonicus]	0.874	0.574	0.588	1e-78
449509133	448	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.919	0.587	0.588	7e-74
449437044	448	PREDICTED: uncharacterized protein LOC10	0.919	0.587	0.584	1e-73

>gi|255574131|ref|XP_002527981.1| conserved hypothetical protein [Ricinus communis] gi|223532607|gb|EEF34393.1| conserved hypothetical protein [Ricinus communis]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/262 (65%), Positives = 214/262 (81%), Gaps = 8/262 (3%)

Query: 4   SKLVIFSLFFALILTA--ADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHI 61
           + L IFS F ALI +A  AD+S++ +D   L +S AV SS  KI+LDQL SKI +LES I
Sbjct: 3   ANLAIFSFFLALIFSAVRADISLESDD--QLISSHAVHSSAFKIQLDQLNSKIHALESQI 60

Query: 62  DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121
           DE+T+ELK KD +++Q +K I+D S+ I+SLQ E+SSLQKKE ++AAEQV KAHARA EL
Sbjct: 61  DERTRELKNKDAIISQNDKIIKDNSDSILSLQTEISSLQKKEKIDAAEQVGKAHARAGEL 120

Query: 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181
           EKQ++N+KKE E Q +EKEALEARA EAEKKI++L  KLE LQKINDEQKSK+RKTERAL
Sbjct: 121 EKQVENIKKEVETQNREKEALEARANEAEKKIAELHLKLENLQKINDEQKSKLRKTERAL 180

Query: 182 KVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAI 241
           KVAEEE+M+AKFEATS++KEL EVH AWLPPWLAV L++    I+THWN HG+PAM++ I
Sbjct: 181 KVAEEELMKAKFEATSKTKELMEVHGAWLPPWLAVELVR----IQTHWNEHGRPAMELVI 236

Query: 242 QKALEKKAQAGKWVQPHVETIK 263
           QKAL+KKA A KW +PH++T+K
Sbjct: 237 QKALDKKAHAEKWAKPHLDTVK 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121216|ref|XP_002330772.1| predicted protein [Populus trichocarpa] gi|118485922|gb|ABK94806.1| unknown [Populus trichocarpa] gi|222872574|gb|EEF09705.1| predicted protein [Populus trichocarpa]

 Score =  326 bits (836), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 180/265 (67%), Positives = 209/265 (78%), Gaps = 3/265 (1%)

Query: 1   MAASKLVIFSLFFALILT-AADVSIQGEDVPPLTAS-DAVDSSPLKIELDQLKSKIRSLE 58
           MAASKL   S+ F   LT  A VS++  D   +T S  AVDSS  KIELDQLKSKI +LE
Sbjct: 1   MAASKLASLSILFIFALTLTAVVSVRA-DYDDITGSVAAVDSSAFKIELDQLKSKIHALE 59

Query: 59  SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118
           SHIDEKT+ELKGKD+++A KEK IQ+K + I SLQ ELSSLQ     +A EQV KAHARA
Sbjct: 60  SHIDEKTKELKGKDDMIALKEKIIQEKVDSIGSLQSELSSLQNNGKTDAQEQVRKAHARA 119

Query: 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178
            ELEKQ+D L KE E QQK+KEALEARA EAEKKIS+L+ KL  L KIN+EQKSKIRKTE
Sbjct: 120 GELEKQVDKLAKELETQQKKKEALEARASEAEKKISELNLKLADLAKINEEQKSKIRKTE 179

Query: 179 RALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMD 238
           RALK+AEEE+++ K EATS++KEL EVH AWLPPWLAV L+  QSL +THWN HGKP M+
Sbjct: 180 RALKIAEEELLKTKSEATSKAKELMEVHGAWLPPWLAVQLVHWQSLAQTHWNEHGKPVME 239

Query: 239 VAIQKALEKKAQAGKWVQPHVETIK 263
           +AIQ+ALEKKAQA KW +PHVETIK
Sbjct: 240 LAIQRALEKKAQAEKWAKPHVETIK 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429824|ref|XP_002280828.1| PREDICTED: uncharacterized protein LOC100254151 [Vitis vinifera] gi|296081785|emb|CBI20790.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/267 (61%), Positives = 204/267 (76%), Gaps = 3/267 (1%)

Query: 1   MAASKLVIFSLFFALILTA--ADVSIQGEDVP-PLTASDAVDSSPLKIELDQLKSKIRSL 57
           M ASKL    +FFALI     AD SI   D P  +  S++ +S  LKIEL  L+ KI++L
Sbjct: 1   MGASKLATLFIFFALIFCKIRADASIDEVDQPQGVVLSESSESEALKIELALLQEKIQTL 60

Query: 58  ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHAR 117
           E+HIDE+++ELK KDE++AQKEK +Q+KS  I  LQ E+ SLQKK T +A EQ+ KA+AR
Sbjct: 61  ETHIDERSKELKSKDEIIAQKEKIVQEKSNSITQLQNEIVSLQKKGTSDAEEQLGKAYAR 120

Query: 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177
           A ELEKQ+D LKKE E QQKEK ALE+RA EAE+K  +L++K+E L+KI DEQK++IRKT
Sbjct: 121 ASELEKQVDKLKKEIETQQKEKAALESRANEAERKTRELNSKVESLKKITDEQKTRIRKT 180

Query: 178 ERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAM 237
           ERAL+VAEEEMM+AKF+A S++KEL EVH AWLPPW A HL+ CQS +E HWN HGKPA+
Sbjct: 181 ERALQVAEEEMMKAKFDANSKTKELMEVHGAWLPPWFANHLISCQSFMEVHWNKHGKPAL 240

Query: 238 DVAIQKALEKKAQAGKWVQPHVETIKA 264
           D   QKALEKKAQA KW +PHVET K 
Sbjct: 241 DTLTQKALEKKAQAQKWSEPHVETFKT 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115694|ref|XP_002332119.1| predicted protein [Populus trichocarpa] gi|118488228|gb|ABK95933.1| unknown [Populus trichocarpa] gi|222874939|gb|EEF12070.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (809), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 173/265 (65%), Positives = 206/265 (77%), Gaps = 2/265 (0%)

Query: 1   MAASKLVIFSLFF--ALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLE 58
           MAASKL   S+ F  ALI TA  V    +D     ++ AVD S LKIELDQLKSKI + E
Sbjct: 1   MAASKLAFLSILFVFALIFTAVGVRADVDDDNTAESAAAVDLSALKIELDQLKSKIHAHE 60

Query: 59  SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118
           SHIDEKT+EL GKD ++AQKE  IQ+K + I SLQ E+SSL+KK  ++A E V KAHARA
Sbjct: 61  SHIDEKTKELNGKDVMIAQKETIIQEKVDSIASLQSEISSLKKKGKIDAQELVGKAHARA 120

Query: 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178
            ELEKQ++ L KE E QQ+E EALEARA EAEKKIS+L+ KL  L+KIN EQKSKIRKTE
Sbjct: 121 GELEKQMEKLSKELETQQQENEALEARASEAEKKISELNFKLADLEKINVEQKSKIRKTE 180

Query: 179 RALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMD 238
           RALK+AEEE+++ K EA S++KEL EVH AWLPPWLAV L++ QSL +THW+ HGKP M+
Sbjct: 181 RALKIAEEELIKTKSEAISKAKELMEVHGAWLPPWLAVQLIRWQSLAQTHWSEHGKPTME 240

Query: 239 VAIQKALEKKAQAGKWVQPHVETIK 263
           +AIQKALEKKAQA KW +PHVETIK
Sbjct: 241 LAIQKALEKKAQAEKWAEPHVETIK 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806748|ref|NP_001242275.1| uncharacterized protein LOC100781922 precursor [Glycine max] gi|255642485|gb|ACU21506.1| unknown [Glycine max]

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 162/267 (60%), Positives = 203/267 (76%), Gaps = 11/267 (4%)

Query: 1   MAASKLVIF----SLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRS 56
           MA  KL +F    +L FA++   AD+SI+G    P       D+S ++I+LDQL SKI+ 
Sbjct: 1   MAPPKLFVFALSVTLIFAIVGAEADISIEGSTPEP-------DTSAIRIQLDQLNSKIQI 53

Query: 57  LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA 116
           LES I EK +E+K KDE++A+KEK+I+DKS  I SLQ E++SLQKK +L+A EQV KAHA
Sbjct: 54  LESQISEKLEEVKKKDEIIAEKEKSIEDKSITIQSLQNEIASLQKKGSLDAEEQVGKAHA 113

Query: 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176
           RA EL+KQ+D LK+E E Q KEK   E R  E EKKI DL++KLE LQKIN+EQK KI+K
Sbjct: 114 RAGELQKQVDKLKRELETQNKEKVNWETRVPELEKKIHDLNSKLEDLQKINEEQKKKIQK 173

Query: 177 TERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPA 236
           TERALKVAEEEM++AKFEAT+  KEL E H AWLPPWLAVH +  +S +++HWN HGKPA
Sbjct: 174 TERALKVAEEEMVKAKFEATAIEKELRETHGAWLPPWLAVHYIHSKSFVDSHWNKHGKPA 233

Query: 237 MDVAIQKALEKKAQAGKWVQPHVETIK 263
           +++  QKALEKKAQAGKW +PHVETIK
Sbjct: 234 LEMVTQKALEKKAQAGKWAEPHVETIK 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074086|gb|ACJ85403.1| unknown [Medicago truncatula]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 162/267 (60%), Positives = 201/267 (75%), Gaps = 15/267 (5%)

Query: 1   MAASKLVIFS----LFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRS 56
           MA  KL +F+    L F+ + + ADVSI+  D           SS LKI+LDQL SKI+S
Sbjct: 1   MAPPKLFVFAISVALIFSFVTSEADVSIEDSD-----------SSALKIQLDQLNSKIQS 49

Query: 57  LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA 116
           LES I EKTQELK KD+V+A+KEK  QDK   I SLQ E++SLQKK +L+A EQV KA+A
Sbjct: 50  LESQISEKTQELKKKDQVIAEKEKLFQDKLSSIQSLQNEVASLQKKGSLDAEEQVGKAYA 109

Query: 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176
           RA EL+KQ+D LK E E Q  EK   E+R  + EKKI DL++KLE +QKIN+EQK +IRK
Sbjct: 110 RAGELQKQVDKLKSELEAQNSEKVNWESRVAKLEKKIHDLNSKLEDVQKINEEQKKQIRK 169

Query: 177 TERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPA 236
           TERALKVAEEEM++AK EAT+++KEL+E H AWLPPWLAVH ++ +S+ E+HWN HGKP 
Sbjct: 170 TERALKVAEEEMLKAKLEATTKAKELSETHGAWLPPWLAVHYIRSKSVAESHWNEHGKPL 229

Query: 237 MDVAIQKALEKKAQAGKWVQPHVETIK 263
           ++V  QKALEKKAQAGKW +PHVETIK
Sbjct: 230 LEVISQKALEKKAQAGKWAEPHVETIK 256

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466595|ref|XP_003603582.1| hypothetical protein MTR_3g109330 [Medicago truncatula] gi|355492630|gb|AES73833.1| hypothetical protein MTR_3g109330 [Medicago truncatula] gi|388509130|gb|AFK42631.1| unknown [Medicago truncatula]

 Score =  303 bits (776), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 162/267 (60%), Positives = 201/267 (75%), Gaps = 15/267 (5%)

Query: 1   MAASKLVIFS----LFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRS 56
           MA  KL +F+    L F+ + + ADVSI+  D           SS LKI+LDQL SKI+S
Sbjct: 1   MAPPKLFVFAISVALIFSFVTSEADVSIEDSD-----------SSALKIQLDQLNSKIQS 49

Query: 57  LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA 116
           LES I EKTQELK KD+V+A+KEK  QDK   I SLQ E++SLQKK +L+A EQV KA+A
Sbjct: 50  LESQISEKTQELKKKDQVIAEKEKLFQDKLSSIQSLQNEVASLQKKGSLDAEEQVGKAYA 109

Query: 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176
           RA EL+KQ+D LK E E Q  EK   E+R  + EKKI DL++KLE +QKIN+EQK +IRK
Sbjct: 110 RAGELQKQVDKLKSELEAQNSEKVNWESRVAKLEKKIHDLNSKLEDVQKINEEQKKQIRK 169

Query: 177 TERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPA 236
           TERALKVAEEEM++AK EAT+++KEL+E H AWLPPWLAVH ++ +S+ E+HWN HGKP 
Sbjct: 170 TERALKVAEEEMLKAKLEATTKAKELSETHGAWLPPWLAVHYIRSKSVAESHWNEHGKPL 229

Query: 237 MDVAIQKALEKKAQAGKWVQPHVETIK 263
           ++V  QKALEKKAQAGKW +PHVETIK
Sbjct: 230 LEVISQKALEKKAQAGKWAEPHVETIK 256

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521969|gb|AFK49046.1| unknown [Lotus japonicus]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/265 (58%), Positives = 200/265 (75%), Gaps = 15/265 (5%)

Query: 1   MAASKLVIFSLFFALI--LTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLE 58
           MA  KL +F+L  ALI  ++AAD  +  +D              +KI+LDQL S+I +LE
Sbjct: 1   MAPPKLFLFTLSLALIFSISAADAGVSHDD-------------SVKIQLDQLNSRILTLE 47

Query: 59  SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118
           S I +K+QELK KDEV+A+KEK IQDKS  + SLQ E++SLQKK +L+A E+V KAHARA
Sbjct: 48  SQIKDKSQELKKKDEVIAEKEKFIQDKSSTVESLQNEVASLQKKGSLDAQEEVGKAHARA 107

Query: 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178
            EL+KQ++NLK+E EKQ KEK   E R  E EKKI DL++KLE +QK+N+EQK+KIRKTE
Sbjct: 108 GELQKQVENLKRELEKQNKEKVNWETRVAELEKKIHDLNSKLEDIQKVNEEQKTKIRKTE 167

Query: 179 RALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMD 238
           RALKVAEEEM++AK EA S+++EL E H  WLPPWLAVH ++ +SL+E HWN HGKP ++
Sbjct: 168 RALKVAEEEMVKAKLEANSKARELIEAHGNWLPPWLAVHYIRSKSLVEAHWNKHGKPVLE 227

Query: 239 VAIQKALEKKAQAGKWVQPHVETIK 263
           V  QKALEKKAQA KW +PH+ET+K
Sbjct: 228 VVTQKALEKKAQAEKWAEPHLETVK 252

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509133|ref|XP_004163503.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229984 [Cucumis sativus]

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 157/267 (58%), Positives = 198/267 (74%), Gaps = 4/267 (1%)

Query: 1   MAASKLVIFSLFFALILT--AAD--VSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRS 56
           MA SKL I SLF AL+LT   AD  + ++ + +  +  SD  + S LK+ELDQLK KI+ 
Sbjct: 1   MAISKLAILSLFLALVLTQLRADESLDVEAQHIVEVVRSDDSEFSDLKLELDQLKFKIQK 60

Query: 57  LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA 116
           LES +D KT ELK +DEV+AQKEK I  K + I  L+ E++SLQKK  L+A EQV KA++
Sbjct: 61  LESDLDVKTXELKRRDEVIAQKEKVISAKLDSISLLESEIASLQKKGKLDAEEQVGKAYS 120

Query: 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176
           RA ELE+Q+D+LK++ E    EKE+ E  A EAEKK  + S +LE LQKI++EQKSKIR 
Sbjct: 121 RAHELERQVDDLKRQLEILNGEKESWETLANEAEKKTLEASLRLESLQKIHEEQKSKIRV 180

Query: 177 TERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPA 236
           TERAL+V++EEM +AKFEA +R KELTEVH AWLPPWLA H  Q QSLI+THWN H KPA
Sbjct: 181 TERALEVSKEEMRKAKFEAATRIKELTEVHGAWLPPWLASHYDQFQSLIKTHWNKHAKPA 240

Query: 237 MDVAIQKALEKKAQAGKWVQPHVETIK 263
           +DV IQKA +K AQA KW +PHV+T+K
Sbjct: 241 IDVVIQKASDKTAQAAKWAEPHVKTVK 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437044|ref|XP_004136302.1| PREDICTED: uncharacterized protein LOC101216465 [Cucumis sativus]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/267 (58%), Positives = 197/267 (73%), Gaps = 4/267 (1%)

Query: 1   MAASKLVIFSLFFALILT--AAD--VSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRS 56
           MA SKL I SLF AL+ T   AD  + ++ + +  +  SD  + S LK+ELDQLK KI+ 
Sbjct: 1   MAISKLAILSLFLALVFTQLRADESLDVEAQHIVEVVRSDDSEFSDLKLELDQLKFKIQK 60

Query: 57  LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA 116
           LES +D K QELK +DEV+AQKEK I  K + I  L+ E++SLQKK  L+A EQV KA++
Sbjct: 61  LESDLDVKNQELKRRDEVIAQKEKVITAKLDSISLLESEIASLQKKGKLDAEEQVGKAYS 120

Query: 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176
           RA ELE+Q+D+LK++ E    EKE+ E  A EAEKK  + S +LE LQKI++EQKSKIR 
Sbjct: 121 RAHELERQVDDLKRQLEILNGEKESWETLANEAEKKTLEASLRLESLQKIHEEQKSKIRV 180

Query: 177 TERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPA 236
           TERAL+V++EEM +AKFEA +R KELTEVH AWLPPWLA H  Q QSLI+THWN H KPA
Sbjct: 181 TERALEVSKEEMRKAKFEAATRIKELTEVHGAWLPPWLASHYDQFQSLIKTHWNKHAKPA 240

Query: 237 MDVAIQKALEKKAQAGKWVQPHVETIK 263
           +DV IQKA +K AQA KW +PHV+T+K
Sbjct: 241 IDVVIQKASDKTAQAAKWAEPHVKTVK 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2128166	437	AT4G31340 "AT4G31340" [Arabido	0.905	0.592	0.524	6.5e-67
TAIR|locus:2061067	440	AT2G24420 [Arabidopsis thalian	0.898	0.584	0.485	1.6e-61
UNIPROTKB|F1PCW0	2240	GOLGA4 "Uncharacterized protei	0.545	0.069	0.25	1.7e-07
SGD|S000002764	944	SPC110 "Inner plaque spindle p	0.580	0.175	0.248	2.5e-06
TAIR|locus:2099114	318	PMD1 "peroxisomal and mitochon	0.727	0.654	0.235	8.3e-06
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.646	0.180	0.228	1e-05
WB|WBGene00002978	284	lev-11 [Caenorhabditis elegans	0.601	0.605	0.186	1.4e-05
UNIPROTKB|Q22866	284	lev-11 "Tropomyosin isoforms a	0.601	0.605	0.186	1.4e-05
ZFIN|ZDB-GENE-040625-114	284	tpm2 "tropomyosin 2 (beta)" [D	0.538	0.542	0.254	2.4e-05
UNIPROTKB|Q1HPQ0	285	Q1HPQ0 "Tropomyosin-2" [Bombyx	0.573	0.575	0.213	2.5e-05

TAIR|locus:2128166 AT4G31340 "AT4G31340" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 138/263 (52%), Positives = 185/263 (70%)

Query:     1 MAASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESH 60
             MAA+KLV   L  AL+ T +  +    D P ++ +   D S  KI LDQL +KIR+LES 
Sbjct:     1 MAAAKLVAL-LLLALLFTTSVFA--DADEPEVSEAAGSDGSS-KIHLDQLNAKIRALESQ 56

Query:    61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120
             IDEKT+E++GKDEVVA+KEK ++++ ++I SLQ E+SSLQKK + ++A+Q+ KA ARADE
Sbjct:    57 IDEKTREVQGKDEVVAEKEKLLKEREDKIASLQTEVSSLQKKGSSDSAKQLGKAQARADE 116

Query:   121 LEKQIDNXXXXXXXXXXXXXXXXXRAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180
             LEKQ++                  R  EAEKK+ +L++ L+KLQK N+EQK+KI K ERA
Sbjct:   117 LEKQVEVLKNFLEQKNKEKDSTEARTNEAEKKLRELNSSLDKLQKTNEEQKNKIGKLERA 176

Query:   181 LKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVA 240
             +K+AEEEM+R K EAT+++KEL E H +WLPPWLAVH  + Q+  ETHW AHGKPA++  
Sbjct:   177 IKIAEEEMLRTKLEATTKAKELLEAHGSWLPPWLAVHWFKFQTYTETHWEAHGKPAVETV 236

Query:   241 IQKALEKKAQAGKWVQPHVETIK 263
             I K  E KAQA KW +PHVE +K
Sbjct:   237 ILKVTEAKAQAEKWAEPHVENVK 259

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2061067 AT2G24420 [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 130/268 (48%), Positives = 178/268 (66%)

Query:     1 MAASKLVIFSLFFALILTA-----ADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIR 55
             MAA+KLV   L  AL+        AD  I G D P L  SD  D     IELDQL +KIR
Sbjct:     1 MAAAKLVALLLLLALVFNFTTCIFADAGIDGGDEPKLR-SDGGD-----IELDQLNAKIR 54

Query:    56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAH 115
             +LES ID+KT+ELKG++E+V +KEK +Q++ +++ SL+ E+SSL+KK + ++ E + KA 
Sbjct:    55 ALESQIDDKTKELKGREELVTEKEKLLQERQDKVASLETEVSSLRKKGSSDSVELLSKAQ 114

Query:   116 ARADELEKQIDNXXXXXXXXXXXXXXXXXRAIEAEKKISDLSAKLEKLQKINDEQKSKIR 175
             ARA ELEKQ++                  +  E EKK+++L++++EKL K N+EQK+KIR
Sbjct:   115 ARATELEKQVEVLKKFLEQKNKEKELIEAQTSETEKKLNELNSRVEKLHKTNEEQKNKIR 174

Query:   176 KTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKP 235
             K ERALK++EEEM+R K EAT+++KEL EVH AWLPPW AVH    Q++  THW+AHGKP
Sbjct:   175 KLERALKISEEEMLRTKHEATTKAKELMEVHGAWLPPWFAVHWSSFQTVAGTHWDAHGKP 234

Query:   236 AMDVAIQKALEKKAQAGKWVQPHVETIK 263
              M+   QK    K QA KW +PH+  +K
Sbjct:   235 VMEKVTQKVTLAKNQAEKWAKPHMANVK 262

GO:0005576 "extracellular region" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

UNIPROTKB|F1PCW0 GOLGA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 153 (58.9 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 41/164 (25%), Positives = 83/164 (50%)

Query:    49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL----SSLQKKET 104
             Q +S I+ L+  ++ KT+E   KDE +   ++ +  ++ER+V L+ E+    S L+KKE 
Sbjct:  1473 QYQSTIKELQMQLELKTKEASEKDEQIQLLKEDLDQQNERLVCLKGEMEDKKSKLEKKEC 1532

Query:   105 LNAAEQVDKAHARADELEKQIDNXXXXXXXXXXXXXXXXXRAIEAEKKISDLSAKLEKLQ 164
              N   ++    AR  ELE+ +                   +  + E+K  ++  KL+ +Q
Sbjct:  1533 -NLETELKTQTARIAELEEHLTQKTTEIKSLSEVLNSYNQQK-DTEQK--EMRQKLQHIQ 1588

Query:   165 KINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
             ++ DE+  ++++ E  +   E+++   K E  ++ KEL   +S+
Sbjct:  1589 ELGDEKDCRVKEAEEKVSRLEKQVSSMKSELETKKKELDHANSS 1632

GO:0000042 "protein targeting to Golgi" evidence=IEA

SGD|S000002764 SPC110 "Inner plaque spindle pole body (SPB) component" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 43/173 (24%), Positives = 83/173 (47%)

Query:    39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98
             +S  LK EL++L++K     S    K  ELK     +A+ E+ I  K+ ++++ + +L+S
Sbjct:   326 ESKRLKDELNELETKFSENGSQSSAKENELKMLKNKIAELEEEISTKNSQLIAKEGKLAS 385

Query:    99 LQKKETL--NAAEQVD-KAHARADELEKQIDNXXXXXXXXXXXXXXXXXRAIEAEKKISD 155
             L  + T   +   Q D +  +R +EL+K  D                  R I+ +KK+  
Sbjct:   386 LMAQLTQLESKLNQRDSQLGSREEELKKTNDKLQKDIRIAREETVSKDERIIDLQKKVKQ 445

Query:   156 LSAKLEKLQKINDEQKS----KIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
             L   L  ++K + E K+    ++   ++ +K+ E ++  A+ + +   KEL E
Sbjct:   446 LENDLFVIKKTHSESKTITDNELESKDKLIKILENDLKVAQEKYSKMEKELKE 498

GO:0005816 "spindle pole body" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000742 "karyogamy involved in conjugation with cellular fusion" evidence=IGI;IMP

GO:0005200 "structural constituent of cytoskeleton" evidence=IPI

GO:0005823 "central plaque of spindle pole body" evidence=IDA

GO:0005822 "inner plaque of spindle pole body" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007020 "microtubule nucleation" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2099114 PMD1 "peroxisomal and mitochondrial division factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 52/221 (23%), Positives = 102/221 (46%)

Query:    39 DSSPLKIELDQLKSKI---RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95
             ++  LK  L++L  +I   + +E+ ++++  E++ + E   +++KA++  S R V L+ E
Sbjct:    42 ENRELKERLERLTGEIEEMKDVEAEMNQRFGEMEKEIEEYEEEKKALEAISTRAVELETE 101

Query:    96 LSSLQKKETLNAAEQVDKAHARADELEKQIDNXXXXXXXXXXXXXXXXXRAIEAEKKISD 155
             +S+L   + + +   VDK      EL+K +                      E EK++ D
Sbjct:   102 VSNLHD-DLITSLNGVDKTAEEVAELKKALAEIVEKLEGCEKEAEGLRKDRAEVEKRVRD 160

Query:   156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA--KFEATSRSKELTEVHSAW-LPP 212
             L  K+  L+    E+KSK  ++E  ++  ++E  R   + + T     L  V +   L  
Sbjct:   161 LERKIGVLEVREMEEKSKKLRSEEEMREIDDEKKREIEELQKTVIVLNLELVKNVEELKK 220

Query:   213 WLAVHLLQCQSLIETHWNAHGKPAMDVAIQK-ALEKKAQAG 252
             W +   L  ++L ET      K   ++ ++K  L KK + G
Sbjct:   221 WKSKKKLTEEALSETQ-----KREKELELKKDELLKKVEEG 256

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0031966 "mitochondrial membrane" evidence=IDA

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 134 (52.2 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 45/197 (22%), Positives = 87/197 (44%)

Query:    17 LTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDE---KTQELKGKDE 73
             L++ D  +  +D    T   +++S    ++ DQL SK + L+S  D+   K QEL+   +
Sbjct:   699 LSSKDEQLSNKD----TQIKSIESDLQSVK-DQLSSKDQELQSTKDQLSSKDQELQSTKD 753

Query:    74 VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNXXXXXX 133
              ++ K++ +Q   +++         L  K+T       D+  ++  EL+   D       
Sbjct:   754 QLSTKDQELQSAKDQLSCQSSTTDQLSAKDT-ELQSTKDQLSSKDSELQSIKDQLSTKDS 812

Query:   134 XXXXXXXXXXXRAIEAEKKISDLSAKLEKLQKINDEQKSK---IRKTERALKVAEEEMMR 190
                        +  E +     LS+K   LQ + D+  SK   ++ T+  L   ++E+  
Sbjct:   813 ELQSSKDQLSSKDSELQSIKDQLSSKDSDLQSVKDQLSSKDSDLQSTKDQLSSKDQELQS 872

Query:   191 AKFEATSRSKELTEVHS 207
              K E TS+ +EL ++ S
Sbjct:   873 VKDELTSKDQELQQITS 889

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00002978 lev-11 [Caenorhabditis elegans (taxid:6239)]

 Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 33/177 (18%), Positives = 90/177 (50%)

Query:    32 LTASDAVDSSPLKI--ELDQLKSKIRSLESHIDEKTQEL-KGKDEVVAQKEKAIQDKSER 88
             L  +DA +    +I  +L++++ ++R  +  + +   +L K ++++ A   K +++K + 
Sbjct:    19 LDRADAAEEKVRQITEKLERVEEELRDTQKKMTQTGDDLDKAQEDLSAATSK-LEEKEKT 77

Query:    89 IVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNXXXXXXXXXXXXXXXXXRAIE 148
             +   + E++SL ++ TL   E++++A  R     ++++                  R+++
Sbjct:    78 VQEAEAEVASLNRRMTL-LEEELERAEERLKIATEKLEEATHNVDESERVRKVMENRSLQ 136

Query:   149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEV 205
              E++ + + A+L++ Q + +E   K  +  R L + E ++ RA+  A +   ++ E+
Sbjct:   137 DEERANTVEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVEL 193

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IDA

GO:0043393 "regulation of protein binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030835 "negative regulation of actin filament depolymerization" evidence=IDA

UNIPROTKB|Q22866 lev-11 "Tropomyosin isoforms a/b/d/f" [Caenorhabditis elegans (taxid:6239)]

 Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 33/177 (18%), Positives = 90/177 (50%)

Query:    32 LTASDAVDSSPLKI--ELDQLKSKIRSLESHIDEKTQEL-KGKDEVVAQKEKAIQDKSER 88
             L  +DA +    +I  +L++++ ++R  +  + +   +L K ++++ A   K +++K + 
Sbjct:    19 LDRADAAEEKVRQITEKLERVEEELRDTQKKMTQTGDDLDKAQEDLSAATSK-LEEKEKT 77

Query:    89 IVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNXXXXXXXXXXXXXXXXXRAIE 148
             +   + E++SL ++ TL   E++++A  R     ++++                  R+++
Sbjct:    78 VQEAEAEVASLNRRMTL-LEEELERAEERLKIATEKLEEATHNVDESERVRKVMENRSLQ 136

Query:   149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEV 205
              E++ + + A+L++ Q + +E   K  +  R L + E ++ RA+  A +   ++ E+
Sbjct:   137 DEERANTVEAQLKEAQLLAEEADRKYDEVARKLAMVEADLERAEERAEAGENKIVEL 193

GO:0009790 "embryo development" evidence=IMP

GO:0034609 "spicule insertion" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0040011 "locomotion" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0051015 "actin filament binding" evidence=IDA

ZFIN|ZDB-GENE-040625-114 tpm2 "tropomyosin 2 (beta)" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 42/165 (25%), Positives = 77/165 (46%)

Query:    43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
             L+ EL  L+ K++ +E  +D+ ++ LK   E + Q EK   D    + SL + +  L ++
Sbjct:    39 LEEELLALQKKLKGVEDELDKYSESLKDAQEKLEQAEKKAADAEAEVASLNRRIQ-LVEE 97

Query:   103 ETLNAAEQVDKAHARADELEKQIDNXXXXXXXXXXXXXXXXXRAIEAEKKISDLSAKLEK 162
             E   A E++  A  + +E EK  D                  RA + E+K+     +L++
Sbjct:    98 ELDRAQERLATALQKLEEAEKAADESERGMKVIEN-------RATKDEEKMEIQEMQLKE 150

Query:   163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT---SRSKELTE 204
              + I +E   K  +  R L + E E+ R++  A    ++S +L E
Sbjct:   151 AKHIAEEADRKYEEVARKLVILEGELERSEERAEVAEAKSGDLEE 195

GO:0005865 "striated muscle thin filament" evidence=IDA

UNIPROTKB|Q1HPQ0 Q1HPQ0 "Tropomyosin-2" [Bombyx mori (taxid:7091)]

 Score = 123 (48.4 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 37/173 (21%), Positives = 84/173 (48%)

Query:    34 ASDA-VDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSL 92
             A DA + +   + E  QL+ KI+++E+ +D+  + L   +  + +KEKA+Q+    + +L
Sbjct:    29 AKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNGKLEEKEKALQNAESEVAAL 88

Query:    93 QKELSSLQKKETLNAAEQVDKAHARADELEKQIDNXXXXXXXXXXXXXXXXXRAIEAEKK 152
              + +  L++ +   + E++  A A+  E  +  D                  R++  E++
Sbjct:    89 NRRIQLLEE-DLERSEERLATATAKLSEASQAADESERARKVLEN-------RSLADEER 140

Query:   153 ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEV 205
             +  L  +L++ + + +E   K  +  R L + E ++ RA+  A S   ++ E+
Sbjct:   141 MDALENQLKEARFLAEEADKKYDEVARKLAMVEADLERAEERAESGESKIVEL 193

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	4e-07
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	5e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	8e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
PRK00106	535	PRK00106, PRK00106, hypothetical protein; Provisio	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	6e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	8e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	2e-04
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-04
PRK11637	428	PRK11637, PRK11637, AmiB activator; Provisional	3e-04
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	3e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	4e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	8e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	8e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
pfam13166	713	pfam13166, AAA_13, AAA domain	0.001
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	0.002
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.002
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.002
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	0.002
TIGR01554	384	TIGR01554, major_cap_HK97, phage major capsid prot	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
pfam08614	194	pfam08614, ATG16, Autophagy protein 16 (ATG16)	0.003
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.004
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.004
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.004
COG1283	533	COG1283, NptA, Na+/phosphate symporter [Inorganic	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 46/166 (27%), Positives = 91/166 (54%), Gaps = 1/166 (0%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           LK E+++L+ K ++L+  ++E  +EL+  +  +   E+ ++   +R   L++E+  L++ 
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE- 835

Query: 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
           E     E++D+     +ELEK+++ LK+E E+ + EKE LE    E E++  +L  +L +
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895

Query: 163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
           L+    E K +I K    L+  E ++ R + E     +EL E +  
Sbjct: 896 LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYED 941

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 48/175 (27%), Positives = 100/175 (57%), Gaps = 6/175 (3%)

Query: 39  DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98
           + + L+ EL+QL+S++  LE  ++E  +EL+   E + + E+ ++   E +  L++E+  
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 99  L------QKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152
           L       ++E     E++++A  R D LE+++++L++  E+ ++E E LE    E E+K
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843

Query: 153 ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHS 207
           + +L  +LE+L+K  +E K ++ + E   +  E+E+   + E     +EL E+ S
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 40/168 (23%), Positives = 89/168 (52%), Gaps = 6/168 (3%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL-QK 101
           L+ EL++L+ +++  E  ++E T EL+  +E + +    + +  E I  LQKEL +L  +
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 102 KETLN-----AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156
              L        E++     + +ELE Q++ L+ + ++  +E   LE +  E ++++  L
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
            A+LE+L+   +E +S++ + E  L+    ++ + + +  S + E+  
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 42/185 (22%), Positives = 86/185 (46%), Gaps = 10/185 (5%)

Query: 34  ASDAVDSSPL--KIELDQLKSKIRSLESHIDEKTQELKGK-------DEVVAQKEKAIQD 84
            S   +SS L  + E+++L+ KI  LE  I E  + L          +E + Q  K +++
Sbjct: 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723

Query: 85  KSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEA 144
            S +I +L+K+L+ L+ +      E++ +      ELE +I+ L++  E+ ++E    EA
Sbjct: 724 LSRQISALRKDLARLEAEVE-QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782

Query: 145 RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
              E E +I  L  +L+ L++  DE ++++           E +   +    +  + L +
Sbjct: 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842

Query: 205 VHSAW 209
           +    
Sbjct: 843 LEEQI 847

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 40/161 (24%), Positives = 82/161 (50%), Gaps = 1/161 (0%)

Query: 44  KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103
           ++EL  L +K++ L   ++E  +EL   +E + + ++ +++  + I  L+ EL  L+++ 
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREEL 283

Query: 104 TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163
                E ++       ELE +I  L++  E+ + E E LE R  E ++KI  L  +LE+ 
Sbjct: 284 EELQEELLELKEEIE-ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342

Query: 164 QKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
           + + +E +  + + E A +  EE++     E     + L E
Sbjct: 343 ETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE 383

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 37/172 (21%), Positives = 84/172 (48%), Gaps = 6/172 (3%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           L+ EL++L+ ++  L   ++E ++++    + +A+ E  ++   ERI  L KEL+ L+ +
Sbjct: 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762

Query: 103 ETLNAAE------QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156
                        ++ +A A  +ELE QI+ LK+E +  ++  + L A      ++ ++L
Sbjct: 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822

Query: 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
             +LE L++     + ++   E  ++   E++     E     + + E+ S 
Sbjct: 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE 874

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 54.0 bits (131), Expect = 3e-08
 Identities = 43/144 (29%), Positives = 78/144 (54%), Gaps = 11/144 (7%)

Query: 64  KTQELKGKDEVVAQKEKAIQDKSERIVSLQK-ELSSLQKKETLN-AAEQVDKAHARADEL 121
           K   L+ K+E+   + +  ++  ER   LQK E   LQK+E L+   E ++K     ++ 
Sbjct: 56  KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKK 115

Query: 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS---AKLEKLQKINDEQKSKIRKTE 178
           EK+++  ++E EK+++E E L    ++  ++IS L+   AK   L+K+ +E + +     
Sbjct: 116 EKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVL- 174

Query: 179 RALKVAEEEMMRAKFEATSRSKEL 202
             +K  EEE   AK EA  ++KE+
Sbjct: 175 --IKEIEEE---AKEEADKKAKEI 193

Length = 520

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 41/177 (23%), Positives = 87/177 (49%), Gaps = 14/177 (7%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE--------RIVSLQKELS 97
           +L  L+ ++  L   I E  + L+  ++++ +  K I+D  E        +I  L+ E++
Sbjct: 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304

Query: 98  SLQKKETLN------AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151
           SL++           A E++ K  A  D+L  +I+ L++E E+++K ++ L     E ++
Sbjct: 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE 364

Query: 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
           ++ DL A+LE++ K   E + +++     L+  + E+   K E     +EL  +   
Sbjct: 365 ELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 38/169 (22%), Positives = 82/169 (48%), Gaps = 3/169 (1%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS---ERIVSLQKELSSL 99
           LK E+++L+ +I  L   ++E   EL+  +E + + ++ I+      E   +L +EL  L
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 100 QKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159
             +      E  +K  A  +ELE+  + L++E  + + E   +     E +++I  L  +
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER 412

Query: 160 LEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
           LE+L +  ++ K ++++ E  L+  + E+     E     ++L E+   
Sbjct: 413 LERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 6/170 (3%)

Query: 41  SPLKIELDQLKSKIRSLESH-----IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95
             L+ +L +L+  +  LE+      I E   EL   +E V++ E  +++  +++  L  E
Sbjct: 768 EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLE 827

Query: 96  LSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISD 155
              L+K E     EQ      +   +EK+I+NL  + E+ ++E E LEA   + E ++ D
Sbjct: 828 KEYLEK-EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886

Query: 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEV 205
           L  + ++L+    E + KI + E  ++   + +   K +  +  +EL+E+
Sbjct: 887 LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 35/159 (22%), Positives = 82/159 (51%), Gaps = 1/159 (0%)

Query: 44  KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103
           K EL +L+ ++  LE+ +++  +ELK     +   E  +++   ++  L+++L  L+++ 
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKREL 725

Query: 104 TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163
                E      +R +ELE++++ L++E E+ Q+  E LE      E+ ++ L  ++E+L
Sbjct: 726 AALEEELEQLQ-SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784

Query: 164 QKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202
           ++     + ++ + E  L+ AE  +   + E  S  +  
Sbjct: 785 EEKRQALQEELEELEEELEEAERRLDALERELESLEQRR 823

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 4/171 (2%)

Query: 39  DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98
           +   LK  L++L+  + SLE  I+    ELK  +  + + E+ +    E +  L+  LS 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 99  LQKKETLNAAEQVDKAH----ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKIS 154
            +  E      ++++      AR  E+E++++ L  E E  +KE + L+ + I+ +++I 
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850

Query: 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEV 205
            +  ++E L    +E + ++ + E AL+  E  +   K E      +L E+
Sbjct: 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 20/167 (11%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           LK EL  L+S++R +E+ +DE +QEL               D S +I  ++KE+  L+++
Sbjct: 686 LKRELSSLQSELRRIENRLDELSQEL--------------SDASRKIGEIEKEIEQLEQE 731

Query: 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL-- 160
           E        +        LE++I+N+K E ++ +   E LE    + E+ ++DL A+L  
Sbjct: 732 EEKLKERLEELE-EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 161 EKLQKINDE---QKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
            ++ +I  E    + ++ + E  L+  E+++ R   E     KE+ E
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE 837

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 5/147 (3%)

Query: 58  ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL--NAAEQVDKAH 115
           E+   +K   L+ K+EV   + +  ++  ER   LQ+    L ++E       E +DK  
Sbjct: 44  EAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKE 103

Query: 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIR 175
              ++ EK++ N +K  +++++E E L A   E  ++IS L+ + E  + + +E + + R
Sbjct: 104 ENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE-EAKEILLEEVEEEAR 162

Query: 176 KTERALKVAEEEMMRAKFEATSRSKEL 202
             E A  + E E   AK EA  ++KE+
Sbjct: 163 -HEAAKLIKEIE-EEAKEEADKKAKEI 187

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 1/157 (0%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105
            L + K+++ +L   ++    EL+  +  V+Q E  IQ+  ERI   +++LS+++ +  L
Sbjct: 32  ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL 91

Query: 106 NAAEQ-VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164
            A    +  A  R + LE ++  L +E EK +KE E L+ R    EK +++  A+LE+  
Sbjct: 92  RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV 151

Query: 165 KINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKE 201
               E+  ++      LK   +  + +++E   ++K+
Sbjct: 152 AEIREEGQELSSKREELKEKLDPELLSEYERIRKNKK 188

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 19/154 (12%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105
           EL++++  I  L+  IDEK Q+L+       ++E+   +K+ER  +L KE    +  E L
Sbjct: 178 ELEEVEENIERLDLIIDEKRQQLER-----LRRER---EKAERYQALLKEKREYEGYELL 229

Query: 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL-- 163
              E +++       +E+Q+ +L++E EK  +E   LE R  E E+ + +L+ K++ L  
Sbjct: 230 KEKEALERQKEA---IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286

Query: 164 ------QKINDEQKSKIRKTERALKVAEEEMMRA 191
                 ++   E +++I   ER++   E E+  A
Sbjct: 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 32/162 (19%), Positives = 83/162 (51%), Gaps = 1/162 (0%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           L  E+ +L+ + + L   +    ++L+  +  + + E  + + +E +  L+++L  L++ 
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE- 351

Query: 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
           E  +   ++++  A  +ELE +++ L+++ E  + +   LE +      +I  L A+LE+
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
           L+   +  + +I +  + L+ AE + ++A+ E      E  +
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ 453

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           +K ++ +L+++I SLE  I EK +EL+  +E +A+ E  I      I  L++E+   +K 
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK- 350

Query: 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
                         R D+L ++   LK+E E  + E E ++    E   ++ D   KLEK
Sbjct: 351 --------------RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396

Query: 163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
           L++  +E K ++ + +  L+   EE+            ++ E+   
Sbjct: 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 37/157 (23%), Positives = 81/157 (51%), Gaps = 14/157 (8%)

Query: 43  LKIELDQLKSKI------RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96
           L+ E+++++ ++         E  I+   +  +  +E++A++ + I++K ER   L++  
Sbjct: 487 LEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERA 546

Query: 97  SSL------QKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150
           + L      +++    A E+ ++A     EL  ++  LK+  E  ++ +  L A A +AE
Sbjct: 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIA-DAE 605

Query: 151 KKISDLSAKLEKLQKINDEQKSKIR-KTERALKVAEE 186
            +I  L  K E L ++NDE++ ++  K ER  ++  E
Sbjct: 606 DEIERLREKREALAELNDERRERLAEKRERKRELEAE 642

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 34/162 (20%), Positives = 81/162 (50%), Gaps = 1/162 (0%)

Query: 41  SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100
           S  K      K +++ LE  + E   +L+  +E +   +  ++   + +  L+++L  L+
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 101 KKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160
           ++       ++       ++L+ +++ L++E E+ ++E E L+ R  E E+++  L   L
Sbjct: 716 RQLEE-LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 161 EKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202
            KL++  +E + K +  +  L+  EEE+  A+    +  +EL
Sbjct: 775 AKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 43/170 (25%), Positives = 98/170 (57%), Gaps = 10/170 (5%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           L+  L++LK KI +L+  ++E+   L+  ++++A+ E+A ++  E++ +L +EL  L + 
Sbjct: 321 LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEA 380

Query: 103 ETLNAAE---QVDKAHARADELEKQIDNLKKE-------SEKQQKEKEALEARAIEAEKK 152
                AE   ++ +     +EL+++I++L++         E  ++E + LEA   E + +
Sbjct: 381 LREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE 440

Query: 153 ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202
           + +L+ +LE+L++  +E + ++++ ER L   +EE+ R + E +S    L
Sbjct: 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query: 48   DQLKSKIRSLESHIDE---KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104
            D+ K K    +   D    K +E K   E    + +A  D++E      +E +   +K+ 
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA----AEEKAEAAEKKK 1373

Query: 105  LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164
              A ++ D A  +A+E +K  D  KK++E+ +K+ + L+  A  A+KK  +   K E+ +
Sbjct: 1374 EEAKKKADAAKKKAEEKKKA-DEAKKKAEEDKKKADELKKAA-AAKKKADEAKKKAEEKK 1431

Query: 165  KINDEQK--SKIRKTERALKVAEE----EMMRAKFEATSRSKEL 202
            K ++ +K   + +K + A K AEE    E  + K E   ++ E 
Sbjct: 1432 KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475

Length = 2084

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 1/165 (0%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105
            +D L+  +R  +  I+   QEL+ ++E++AQ       + E+   LQ+E   L  KE  
Sbjct: 239 RIDLLQELLRDEQEEIESSKQELEKEEEILAQ-VLKENKEEEKEKKLQEEELKLLAKEEE 297

Query: 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165
               ++ K   R  + E+++   +KE +K +KE +  +    E EK++ +L  K E  ++
Sbjct: 298 ELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEE 357

Query: 166 INDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWL 210
             ++ +    K E+  +    +        +S +K   E      
Sbjct: 358 EEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKN 402

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 39/170 (22%), Positives = 89/170 (52%), Gaps = 15/170 (8%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           L+ EL+ L+  +  L+  I+E  ++ +   E + + E+ +++   R+ +L++EL SL+  
Sbjct: 763 LEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE-- 820

Query: 103 ETLNAAEQVDKAHARADELEKQI-------DNLKKESEKQQKEKEALEARAIEAEKKISD 155
                 ++ ++     +ELE++I       D L++E E+ +KE E L+    E E +  +
Sbjct: 821 ------QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEE 874

Query: 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEV 205
           L  +L++L++  +E + ++R+ E  L   +EE+ + +        +L  +
Sbjct: 875 LEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL 924

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 31/159 (19%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 37  AVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96
                 L  E  +LK ++  L + ++E  +E     + +    + ++     I  L++EL
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408

Query: 97  SSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156
             LQ        E++ +      +L   I  ++ +  + ++EKE       + E K+  L
Sbjct: 409 DRLQ--------EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460

Query: 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195
           +A L K ++   + K +  + E+ L   + E+  A+ +A
Sbjct: 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 34/136 (25%), Positives = 75/136 (55%), Gaps = 6/136 (4%)

Query: 40  SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99
            S L+ E+ ++++++R +E  ++  T E +  ++ + + ++   D  E+I S++KE+ +L
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859

Query: 100 QKK------ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153
             K      E       +    +R  +L+K+ D L+ +  + +++ E LEA+  +  K++
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919

Query: 154 SDLSAKLEKLQKINDE 169
           S+L AKLE L++   E
Sbjct: 920 SELKAKLEALEEELSE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 35/133 (26%), Positives = 76/133 (57%), Gaps = 1/133 (0%)

Query: 76  AQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ 135
            + E+ + +   ++  L++EL SL K E  +  + +++   + +ELE+Q++ LK+E    
Sbjct: 670 KELEEELAELEAQLEKLEEELKSL-KNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728

Query: 136 QKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195
           ++E E L++R  E E+++ +L  +LE+LQ+  +E + ++   E AL   +EE+   + + 
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788

Query: 196 TSRSKELTEVHSA 208
            +  +EL E+   
Sbjct: 789 QALQEELEELEEE 801

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 44   KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103
            K E  +++  ++  E     K +E K  +E    K KA + K       + E    ++ E
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEE---AKIKAEELKKAEEEKKKVEQLKKKEAE 1644

Query: 104  TLNAAEQVDKAH----ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159
                AE++ KA      +A E  K+ +  KK++E+ +K +E  E +A EA KK ++ + K
Sbjct: 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED-EKKAAEALKKEAEEAKK 1703

Query: 160  LEKLQKINDEQKSK---IRKTERALKVAEEEMMRAKFEATSRSKEL 202
             E+L+K   E+K K   ++K E   K+  EE  +   E   +++E 
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEA 1749

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 8/172 (4%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           L+  L  L+ ++  LE+ ++E   +L    E +A+ E+ +++  E + SL+ EL  L+ +
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366

Query: 103 ----ETLNAA--EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156
               E+      EQ++   ++  +LE QI +L  E E+ +   E LE R    +++I +L
Sbjct: 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426

Query: 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
             KLE+ +    E ++++ + E  L+  +EE+ R +       +EL E   A
Sbjct: 427 LKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 37/165 (22%), Positives = 81/165 (49%), Gaps = 1/165 (0%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           L+ +++QLK ++++L   +DE   EL   +E  A   + ++    RI + ++ L  L++ 
Sbjct: 787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE- 845

Query: 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
           +    +E ++   A  +ELE+ I+ L+ E E    E+ +LE        ++ +LS +L +
Sbjct: 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905

Query: 163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHS 207
           L+    E + ++ +    L   E  +   +    +  + L+E +S
Sbjct: 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL--QKKE 103
           EL Q++S++    + +D K + L  K++ +  KE+++ DKS+ I   ++++  L  QKK 
Sbjct: 98  ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKA 157

Query: 104 TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
            L     + +A AR   L +  + L  E          +  R  EAE+++ D S K+ K
Sbjct: 158 ELERVAALSQAEAREIILAETENKLTHE----------IATRIREAEREVKDRSDKMAK 206

Length = 535

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 34/168 (20%), Positives = 78/168 (46%), Gaps = 3/168 (1%)

Query: 42   PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101
             L+ +LD+L+ ++  LE  ++E  +EL+  +    + E  +++  E    L++EL  L+ 
Sbjct: 839  ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898

Query: 102  KETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE--ARAIEAEKKISDLSAK 159
            +      E+++K   R +ELE +++ L+ E  + ++E E         E E++I  L  +
Sbjct: 899  ELA-ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE 957

Query: 160  LEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHS 207
            +E L  +N     +  + E   +  + +    +       + + E+  
Sbjct: 958  IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 37/150 (24%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           L+ EL+ L+ +   LE  I+E  +E++  +E + + E+ +++  + +  L++EL  L+  
Sbjct: 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEA- 870

Query: 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
           E     +++ +     +ELE+++  L+ E  + ++E E L  R  E E K+  L  +L +
Sbjct: 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930

Query: 163 LQ-KINDEQKSKIRKT-ERALKVAEEEMMR 190
           L+ ++ +E +  +    ER ++  EEE+  
Sbjct: 931 LEEELEEEYEDTLETELEREIERLEEEIEA 960

Length = 1163

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 84  DKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE 143
           +    +  L++  S    K      E++DK    AD+ +++ D  +  ++KQ+ E    +
Sbjct: 195 NFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQ 254

Query: 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192
             A    K     S K +K  ++ + QK +I K +  +K  +EE ++AK
Sbjct: 255 QEAKNLPKPADTSSPKEDK--QVAENQKREIEKAQIEIKKNDEEALKAK 301

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 38/171 (22%), Positives = 90/171 (52%), Gaps = 12/171 (7%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER-----------IVSLQK 94
           +L++ +  +  LE  ++E  ++L+  +    + E+  + K+E            +  L+K
Sbjct: 180 KLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRK 239

Query: 95  ELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKIS 154
           EL  L+++ +    E++++     +E EK+I+ LK E E+ ++E E L+   +E +++I 
Sbjct: 240 ELEELEEELS-RLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIE 298

Query: 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEV 205
           +L  ++  L++  +E ++++ + E  L+  +E++   K E   R   L E+
Sbjct: 299 ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL 349

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 10/165 (6%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL--- 99
           LK +L +LK +I+SL+  + EK +ELK K   +   EK + +  E +  L KEL  L   
Sbjct: 530 LKEKLIKLKGEIKSLKKEL-EKLEELKKKLAEL---EKKLDELEEELAELLKELEELGFE 585

Query: 100 ---QKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156
              + +E L   E     +    + EK+++  +KE +K ++E +       E EK++ +L
Sbjct: 586 SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL 645

Query: 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKE 201
             +LE+L+K   E++ +  + E      E   +RA+ E   + +E
Sbjct: 646 RKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRRE 690

Length = 880

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 63   EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA-HARADEL 121
            +K +E +  +E+   +E  +   + R  +++ E    +K + L  AE+  KA  A+  E 
Sbjct: 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAE--EARKADELKKAEEKKKADEAKKAEE 1300

Query: 122  EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181
            +K+ D  KK++E+ +K  EA + +A EA+KK      K E+ +K  +  K++        
Sbjct: 1301 KKKADEAKKKAEEAKKADEA-KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359

Query: 182  KVAEEEMMRAKFEATSRSKELTEV 205
            + AEE+   A+ +     K+    
Sbjct: 1360 EAAEEKAEAAEKKKEEAKKKADAA 1383

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 16/160 (10%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ---KELSSLQKK 102
           EL++LK +I  LE  ++      +  +E + + E+ I++  + I  L+   KEL  L++K
Sbjct: 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK 291

Query: 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
                            +L +  +    E  + +K    LE      E++I +L  K E+
Sbjct: 292 AE------------EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339

Query: 163 LQKINDEQKSKIRKTERALKVAEE-EMMRAKFEATSRSKE 201
           L+++  + K   ++ E   +  E  E  +AK E   R K+
Sbjct: 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKK 379

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 35/176 (19%), Positives = 88/176 (50%), Gaps = 10/176 (5%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL--- 99
           L+ E+  L+ ++  LE+ ++E  + L+   E +   ++ ++++   +  L++ L+ L   
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359

Query: 100 --QKKETLNAAEQVDKAH-----ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152
             + +E L+A  +  +           ELE ++  ++ E E+ ++E E+LE R     ++
Sbjct: 360 KEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSER 419

Query: 153 ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
           + DL  +L++L+   +E ++++ +    L+  EE++   +       +EL E+   
Sbjct: 420 LEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 28/134 (20%), Positives = 61/134 (45%), Gaps = 12/134 (8%)

Query: 76  AQKEKAI--QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133
            Q EKA   ++    +  L+  L  L+ +E               +EL++++   ++E E
Sbjct: 207 RQAEKAERYKELKAELRELELALLVLRLEE----------LREELEELQEELKEAEEELE 256

Query: 134 KQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193
           +   E + LE +  E   ++S+L  ++E+LQK      ++I + E+  ++  E +   + 
Sbjct: 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316

Query: 194 EATSRSKELTEVHS 207
           +      +L E+ S
Sbjct: 317 QLEELEAQLEELES 330

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 68  LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ------KKETLNAAEQVDKAHARADEL 121
            +G       +   +Q   ER+  L++ELSSLQ      +      ++++  A  +  E+
Sbjct: 662 PRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI 721

Query: 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181
           EK+I+ L++E EK ++  E LE      E++I ++ ++L++L+   +E +  + K E AL
Sbjct: 722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781

Query: 182 KVAEEEMMRAKF-EATSRSKELTEVHSAW 209
              E  +  ++  E  +   +L E  S  
Sbjct: 782 NDLEARLSHSRIPEIQAELSKLEEEVSRI 810

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL--QKKE 103
           EL +L+ ++   E  +D K + L  K+E + +KEK + +K + +   ++EL  L  +++E
Sbjct: 77  ELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQRE 136

Query: 104 TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156
            L     + +  A+   LE+  +  + E+ K  KE E  EA+  EA+KK  ++
Sbjct: 137 ELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEE-EAKE-EADKKAKEI 187

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 35/142 (24%), Positives = 74/142 (52%), Gaps = 8/142 (5%)

Query: 48  DQLKSKIRSLESHIDEKTQELKGKDEV---VAQKEKAIQDKSERIVSLQKELSSLQKKET 104
             L   I+ ++  I+   + +K  + +   + +KEK +++    I  +  EL  L+++  
Sbjct: 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREE-- 222

Query: 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164
               E+++K     +EL+++I+ L+KE E  +  K  LE +  E E++I +L  ++E+L+
Sbjct: 223 ---LEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE 279

Query: 165 KINDEQKSKIRKTERALKVAEE 186
           +   E K    K E  +K++E 
Sbjct: 280 EKVKELKELKEKAEEYIKLSEF 301

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 38/164 (23%), Positives = 88/164 (53%), Gaps = 1/164 (0%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
               L++L+ +I  LE  ++     L+  +E++ +K K+++++ E++    ++L S  ++
Sbjct: 289 KIERLEELEREIEELEEELEGLRALLEELEELL-EKLKSLEERLEKLEEKLEKLESELEE 347

Query: 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
                 E       R  ELE++++ L+KE EK  +  + LE    E ++++++LSA LE+
Sbjct: 348 LAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEE 407

Query: 163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVH 206
           +Q+  +E + ++ + ER L+  EEE+ + + +      +   + 
Sbjct: 408 IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIA 451

Length = 908

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 27/97 (27%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 86  SERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE-- 143
            ER+  LQ+EL+ LQ+ E     EQ+ +      EL++++  L+ E E+ QKE   ++  
Sbjct: 65  RERLPELQQELAELQE-ELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQL 123

Query: 144 -ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179
            A AIE +++  +L  +L +L++ N+  +++  + + 
Sbjct: 124 SANAIELDEENRELREELAELKQENEALEAENERLQE 160

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 20/140 (14%)

Query: 65  TQELKGKDEVVAQ--------------KEKAIQDKSERIVSLQKELSSLQ------KKET 104
           ++E+ GKD  + +              + +  QD  + + +L+  LS+ +      +   
Sbjct: 45  SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALL 104

Query: 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164
              A     A  RA EL +++D+ K+ S +   + E L  +     ++++ L A L+  +
Sbjct: 105 AELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164

Query: 165 KINDEQKSKIRKTERALKVA 184
           K + E ++KI    R L VA
Sbjct: 165 KRDRESQAKIADLGRRLNVA 184

Length = 343

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 15/153 (9%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
            LK EL++L+++   LE  + E  +E +  +E + + E  + +  E I  L++ L  L+ K
Sbjct: 861  LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAK 920

Query: 103  ET---------------LNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAI 147
                                     +     + LE++I+ L   + +  +E E +E R  
Sbjct: 921  LERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYE 980

Query: 148  EAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180
            E + +  DL    EKL ++ +E   + R+  + 
Sbjct: 981  ELKSQREDLEEAKEKLLEVIEELDKEKRERFKE 1013

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%)

Query: 64   KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDK----AHARAD 119
            K +E +  DE+   +EK   D++++    +K   + +K E    A++  K    A  +AD
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332

Query: 120  ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSK---IRK 176
              +K+ +  KK +E  + E EA    A  AE+K      K E+ +K  D  K K    +K
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392

Query: 177  TERALKVAEEEMMRA 191
             + A K AEE+  +A
Sbjct: 1393 ADEAKKKAEEDKKKA 1407

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 15/169 (8%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105
           EL +++ K R L   + E  + LK + E++  KE A     E++  L+++L     +E  
Sbjct: 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLKELA-----EQLKELEEKLKKYNLEELE 521

Query: 106 NAAEQVDKAHARADELEKQIDNLKKESEKQQ---KEKEALEARAIEAEKKISDLSAKLEK 162
             AE+ +K   +  +L+ +I +LKKE EK +   K+   LE +  E E+++++L  +LE+
Sbjct: 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581

Query: 163 LQ-KINDEQKSKIRKTERA------LKVAEEEMMRAKFEATSRSKELTE 204
           L  +  +E + ++++ E        LK AE+E+ R + E     +EL +
Sbjct: 582 LGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDK 630

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 37/141 (26%), Positives = 76/141 (53%), Gaps = 7/141 (4%)

Query: 45  IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104
           I+L +   +       I+++   L+ +   + ++ K +++K ER+  L+K+L  L+K+  
Sbjct: 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKR-- 353

Query: 105 LNAAEQVDKAHARADELEKQIDNLKKES-----EKQQKEKEALEARAIEAEKKISDLSAK 159
           L   E+  + +  A   +++++ LKK       EK +KE E LE    E E++IS ++A+
Sbjct: 354 LEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITAR 413

Query: 160 LEKLQKINDEQKSKIRKTERA 180
           + +L+K   E K  I + ++A
Sbjct: 414 IGELKKEIKELKKAIEELKKA 434

Length = 880

>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 56  SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAH 115
           +  +H  +   +LK   + +A KEK+++ + ++  SL  +L   Q++    A+ ++ +  
Sbjct: 37  AFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKK-QEEAISQASRKLRETQ 95

Query: 116 ARADELEKQIDNLK---KESEKQQKEKEALEARAIEA 149
              ++L KQID L     + E+QQ  +E L A  ++A
Sbjct: 96  NTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132

Length = 428

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 33/143 (23%), Positives = 72/143 (50%), Gaps = 15/143 (10%)

Query: 44  KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103
           K +L++L + +  LE  +++K +E +   +   + ++ +++K E++   + +L    +KE
Sbjct: 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574

Query: 104 TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163
              A + + +A   ADE+ K++  L+K      K  E +EAR             +L K 
Sbjct: 575 ---AQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEAR------------KRLNKA 619

Query: 164 QKINDEQKSKIRKTERALKVAEE 186
            +  +++K K ++ +  LKV +E
Sbjct: 620 NEKKEKKKKKQKEKQEELKVGDE 642

Length = 782

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 25/104 (24%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 50  LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAE 109
            + ++  L+  + E  +EL    E +A+ ++  Q+  + + +L+ EL  LQK+       
Sbjct: 64  ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKE-----LA 118

Query: 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKI 153
           ++ +  A A EL+++   L++E  + ++E EALEA     ++  
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENE 162

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 41/170 (24%), Positives = 91/170 (53%), Gaps = 5/170 (2%)

Query: 43  LKIELDQLKSKIRSLESHID--EKTQELKGKDEVV--AQKEKAIQDKSERIVSLQKELSS 98
           L+  L++L+ ++  LE   +  E+ QELK +   +  A     +++  + +  L++ELS 
Sbjct: 191 LEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSR 250

Query: 99  LQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSA 158
           L++ E     E++++A    +EL+ +++ L++E E+ Q+E   L+    E E +IS L  
Sbjct: 251 LEE-ELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRE 309

Query: 159 KLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
           +LE+L+   +E + ++ + +  ++  +EE+   +       + L E+  A
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359

Length = 1163

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 18/105 (17%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 38  VDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97
            D+   +  L +L+ ++  L+  + E  ++L    +   + ++ +      +  LQKEL+
Sbjct: 59  SDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELA 118

Query: 98  SLQK--KETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140
            +++     +   E+  +      EL+++ + L+ E+E+ Q+ ++
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 49  QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK-ETLNA 107
           +LK+++R LE  +      L+   E + + ++ +++  E +  L  EL  L++K E L  
Sbjct: 217 ELKAELRELELAL--LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274

Query: 108 AEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIN 167
                       ELE++I+ L+KE      E   LE +     +++++L  +LE+L+   
Sbjct: 275 EVS---------ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325

Query: 168 DEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAW 209
           +E +SK+ +    L   EE++   K E  S   EL E+ +  
Sbjct: 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 11/146 (7%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK- 101
            L+ EL++L  ++R LES   E  +EL+   E +AQ E  ++    RI +LQ+ LS     
Sbjct: 892  LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951

Query: 102  ------KETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISD 155
                         +  ++A  R   LE +I  L   +    +E E L+ R      +  D
Sbjct: 952  TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKED 1011

Query: 156  LSAKLEKLQ----KINDEQKSKIRKT 177
            L+   E L+    +I+ E + + + T
Sbjct: 1012 LTEAKETLEEAIEEIDREARERFKDT 1037

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 30/145 (20%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 45  IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104
           + + +L  +   LE  I E  + LK     +    KA++     +  L+ ++S L+    
Sbjct: 10  LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLE---- 65

Query: 105 LNAAEQVDKAHARADELEKQIDNLKKESE--KQQKEKEALEARAIEAEKKISDLSAKLEK 162
                ++ +   R    E+++  +K E E      E +  + R    E ++++L  ++EK
Sbjct: 66  ----SEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEK 121

Query: 163 LQKINDEQKSKIRKTERALKVAEEE 187
           L+K  ++ K ++ + E+ L  AE  
Sbjct: 122 LEKEIEDLKERLERLEKNLAEAEAR 146

Length = 239

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 19/122 (15%)

Query: 93  QKELSSLQKKETLNAAEQVDK----AHARAD------ELEKQIDNLKKESEKQQKEKEAL 142
           Q+ LS +QK+E        +     A AR D      EL  Q   L+KE  + +KE E L
Sbjct: 516 QQWLSDVQKQENQTDEAPKENNANSAQARKDQKRREAELRTQTQPLRKEIARLEKEMEKL 575

Query: 143 EARAIEAEKKISDLS-------AKLEKLQKINDEQKSKIRKTERALKVAEE--EMMRAKF 193
            A+  +AE+K+ D         A+L    +     KS + + E A   A+E  E M  + 
Sbjct: 576 NAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQMLLEG 635

Query: 194 EA 195
           ++
Sbjct: 636 QS 637

Length = 638

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 34   ASDAVDSSPLKIELDQLK-SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSL 92
            A+D  +++  K E  + K  + +       +K +E K  DE    K+KA +DK +     
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA---KKKAEEDKKKADELK 1411

Query: 93   QKELSSLQKKETLNAAEQVDKAH--ARADELEKQIDNLKKESEKQQK----EKEALEARA 146
            +   +  +  E    AE+  KA    +  E  K+ D  KK++E+ +K    +K+A EA+ 
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471

Query: 147  IEAEKKISDLSAKLEKLQKINDEQKSK---IRKTERALKVAEE 186
             +  KK ++ + K ++ +K  +E K K    +K   A K A+E
Sbjct: 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514

Length = 2084

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 17/134 (12%)

Query: 39  DSSPLKIELDQLKSKIRSLESHIDEKTQELKGK-------------DEVVAQKEKAIQDK 85
           D   LK  L+ L+  +      ++EK ++                 ++++    + I++ 
Sbjct: 321 DVEELKALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREH 380

Query: 86  SERIVSLQKELSSLQKK----ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEA 141
           +E+I +L+KE +  +KK          E +D        LEK I++L+KE ++ + E +A
Sbjct: 381 NEKIDNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKA 440

Query: 142 LEARAIEAEKKISD 155
           LE    E EK++++
Sbjct: 441 LEKEIKELEKQLTN 454

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 22/149 (14%), Positives = 62/149 (41%), Gaps = 11/149 (7%)

Query: 20  ADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLE---SHIDEKTQELKGKDEVVA 76
           A ++ Q +D+     + A     L+ +   L++  + L+   + +  +  +LK +   + 
Sbjct: 140 ARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIE 199

Query: 77  QKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136
           Q+ + +  ++    +  +EL+         AA+Q  +A     + + QI    ++   + 
Sbjct: 200 QEAQNLATRANAAQARTEELARRAA-----AAQQTAQA---IQQRDAQISQKAQQIAARA 251

Query: 137 KEKEALEARAIEAEKKISDLSAKLEKLQK 165
           ++    E +    E   + L  ++ +L+ 
Sbjct: 252 EQIRERERQLQRLETAQARLEQEVAQLEA 280

Length = 499

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 22/116 (18%), Positives = 50/116 (43%), Gaps = 8/116 (6%)

Query: 54  IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDK 113
             ++E+  +E     +   + + +   A Q  +E   SL+++   L+        E+ ++
Sbjct: 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE--------ERAEE 360

Query: 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169
               A ELE +++  ++  E +++E E LE    E  ++  D    L   +   +E
Sbjct: 361 LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE 416

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 32/145 (22%), Positives = 65/145 (44%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           L  E ++LKS++  LE    +  ++LK  ++ + + EK ++ + E I  L+KEL  L+ K
Sbjct: 292 LAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIK 351

Query: 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
                 E+      +    + + + L K+  + ++   A + +  E E K  +       
Sbjct: 352 REAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLL 411

Query: 163 LQKINDEQKSKIRKTERALKVAEEE 187
           L+    E+     + +  LK+ EE 
Sbjct: 412 LELSEQEEDLLKEEKKEELKIVEEL 436

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 13/93 (13%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105
           EL +L+ ++  L+  + E  QE +   + ++  E  ++   + +  +++  ++  + +  
Sbjct: 74  ELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEE 133

Query: 106 NA--AEQVDKAHARADELEKQIDNLKKESEKQQ 136
           N    E++ +     + LE + + L++  +++ 
Sbjct: 134 NRELREELAELKQENEALEAENERLQENEQRRW 166

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 14/112 (12%)

Query: 111 VDKAHARADELEKQIDNLKKESEKQQK--EKEALEARAI--EAEKKISDLSAKLEKLQKI 166
           +++A     E +++++ L    E+ ++  E++A EA A+  EAEK   +L  K EKLQ+ 
Sbjct: 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563

Query: 167 NDEQKSKIRKT-ERALKVAEEE---------MMRAKFEATSRSKELTEVHSA 208
            D+   +  K  ++A+K A++E          ++    A+ ++ EL E    
Sbjct: 564 EDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKR 615

Length = 782

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 9/102 (8%)

Query: 91  SLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150
            +Q +L +L K++ L A +++ +       LE+ +  L K  ++Q++E E L+ +  +A 
Sbjct: 40  DVQAQLDALNKQKLLEAEDKLVQQD-----LEQTLALLDK-IDRQKEETEQLKQQLAQAP 93

Query: 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192
            K+    A+LE L+  NDE+    R+T   L + + E   A+
Sbjct: 94  AKLRQAQAELEALKDDNDEET---RETLSTLSLRQLESRLAQ 132

Length = 1113

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 19/161 (11%)

Query: 47  LDQLKSKIRSLESHIDE---KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103
               K K+  +E  + E        + K  V+                L + LS ++++E
Sbjct: 354 YLAYKPKLEKVERKLPELGIWKDVERIKALVIRGY------------PLAEALSKVKEEE 401

Query: 104 TLNAAEQVDKAHARADE--LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161
                ++  +   R +    EK+I  L++  E+ ++E   L+    E +++I  L ++LE
Sbjct: 402 -RPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE 460

Query: 162 KLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202
           + ++     K +  +  RA     E + +   E   R +EL
Sbjct: 461 RFRR-EVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500

Length = 652

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 100 QKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159
            +       ++V     + +   ++    +  +E QQ+E  ALE  A E E+K  +L A+
Sbjct: 140 PENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQ 199

Query: 160 LEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
           LE+LQ+    + S+ RK +R              +A  R  EL+E
Sbjct: 200 LEQLQE-KAAETSQERKQKR---------KEITDQAAKRL-ELSE 233

Length = 1123

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 30/167 (17%), Positives = 69/167 (41%), Gaps = 10/167 (5%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105
           ++  LK++  +L   I E   ++  K + + +K +A++  S +  +    +   + +E  
Sbjct: 272 DIANLKTQNDNLYEKIQE-AMKISQKIKTLREKWRALKSDSNKYENYVNAMKQ-KSQEWP 329

Query: 106 NAAEQ----VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161
              E+    ++        L+  ID L K+  KQ    E  E    E EK    L+ +L+
Sbjct: 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREK----LTRELD 385

Query: 162 KLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
           K+   +D+    ++  +   +   + + +   +  S  + +T   S 
Sbjct: 386 KINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQ 432

Length = 622

>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)

Query: 82  IQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEA 141
           +++  E +  L KEL  L + E L  AE   +  A  D L+++ID L  E ++ ++  + 
Sbjct: 1   LKELREALAELAKELRKLTEDEKLAEAE---EEKAEYDALKEEIDKLDAEIDRLEELLDE 57

Query: 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197
           LEA+   A  +      + E+ +    E ++ +R  +     A  E  +A    T 
Sbjct: 58  LEAKP-AASGEGGGGEEEEEEAKAEAAEFRAYLRGGDD----ALAEERKALSTGTD 108

This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease [Mobile and extrachromosomal element functions, Prophage functions]. Length = 384

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 2/131 (1%)

Query: 100 QKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159
           +++E     E++++   +  ELEK +  L+KE E+ ++E E L     E  ++IS L   
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 160 LEKLQKI--NDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVH 217
           L +L+      E++      E     AE E +  + E         E     L   +   
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 218 LLQCQSLIETH 228
             + ++L E  
Sbjct: 795 KEELKALREAL 805

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 10/120 (8%)

Query: 100 QKKETLNAAEQVDKAHARAD----ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKIS- 154
           ++KET    E+  +   R +    ELE+Q+ +L++++EK ++ KE L+A   E E  +  
Sbjct: 173 RRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE-LKAELRELELALLV 231

Query: 155 ----DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWL 210
               +L  +LE+LQ+   E + ++ +    L+  EE++   + E +   +E+ E+     
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           L+ +   LK +I+S+E  I+    + +  +E + + E A++D   R+  L+KE   L+  
Sbjct: 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA- 896

Query: 103 ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
                  Q+ +   + +ELE QI+  +K   + + + EALE    E E    +     E+
Sbjct: 897 -------QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949

Query: 163 LQKINDEQKSKIRKTERALKVAEEEMMRA 191
              + D Q  ++++ E  ++  E   M A
Sbjct: 950 ELSLEDVQA-ELQRVEEEIRALEPVNMLA 977

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16)

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
           L+ E+ QL+  I  L S I     E++   E + +KEK  +   + ++SL  EL++L++K
Sbjct: 107 LRREIQQLEKTIAELRSEITSLETEIRDLREELQEKEKDNETLQDELISLNIELNALEEK 166

Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. Length = 194

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 38.2 bits (90), Expect = 0.004
 Identities = 26/118 (22%), Positives = 64/118 (54%), Gaps = 15/118 (12%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105
           EL + +++++ LE  + +K + L  K E++ ++E+ ++ K + +   Q+EL   +++   
Sbjct: 76  ELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135

Query: 106 NAAEQVDK----AHARADELEKQI-DNLKKESEKQ------QKEKEALEARAIEAEKK 152
              EQ+ +    +   A+E ++ + + +++E+  +      + E+EA E    EA+KK
Sbjct: 136 LIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKE----EADKK 189

Length = 520

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 19/149 (12%)

Query: 40  SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99
               + +L++LK +I  L+  +D   +EL+   E +A    AI     +I  L++E    
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446

Query: 100 QKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159
             +  +   E          +LE+   +L K     ++E   L+      EK++S L  +
Sbjct: 447 ALE--IKKQEW---------KLEQLAADLSKY----EQELYDLKEEYDRVEKELSKLQRE 491

Query: 160 LEKLQKINDEQKSKIRKTERALKVAEEEM 188
           L + +     Q     +  R  +  EE +
Sbjct: 492 LAEAEA----QARASEERVRGGRAVEEVL 516

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 37/147 (25%), Positives = 75/147 (51%), Gaps = 9/147 (6%)

Query: 45  IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET 104
           +EL   + ++   E  + +  +EL    E +A+ EK +++  + +  L+K+ S  + +E 
Sbjct: 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEEL 664

Query: 105 LNAAEQVDKAHARAD----ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160
                ++ +  A       ELEK+ + +KK  EK ++E E  E    +A+K++  L   L
Sbjct: 665 REEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE----KAKKELEKLEKAL 720

Query: 161 EKLQKINDE-QKSKIRKTERALKVAEE 186
           E+++++ ++ +K K    ERAL    E
Sbjct: 721 ERVEELREKVKKYKALLKERALSKVGE 747

Length = 880

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 26  GEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85
           G  VPP    +      L+ E+  LK ++        +     + + + +   E    + 
Sbjct: 132 GPFVPPEDPENL--LHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAEL 189

Query: 86  SERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126
            E+   L+ +L  LQ+K    + E+  K     D+  K+++
Sbjct: 190 EEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQAAKRLE 230

Length = 1123

>gnl|CDD|224202 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 38/220 (17%), Positives = 81/220 (36%), Gaps = 44/220 (20%)

Query: 2   AASKLVIFSLFFALILT------------AADVSIQGEDVPPLTA----SDAVDS----- 40
            A+ +    L F ++L                  I G++   +        A+DS     
Sbjct: 274 PAALIAHAHLLFNIVLALAALPFTGLLARFVTRLIPGDEDDEIEPKHLDETALDSPVVAL 333

Query: 41  SPLKIEL-------DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93
           +    E+       +Q+  ++        +K +E++  ++ V +  + I+    R+    
Sbjct: 334 ANAAREVLRLGDSIEQMLERLYEYIEGDAKKVKEIRKLEDAVDRLYEEIKLYLARLSKE- 392

Query: 94  KELSSLQKKETLNAAEQVDKA--------HAR--ADELEKQIDNLKKESEKQQKEKEALE 143
                L ++E+   AE +D A              +  +K+I N +  SE   +E +AL 
Sbjct: 393 ----GLSEEESRRWAEIIDAAINLEHIGDIIERLLELADKKIANGRAFSEDGLEELDALF 448

Query: 144 ARAIEAEKKISDLSAKLEK-LQKINDEQKSKIRKTERALK 182
           A  +E  +    +    +  L +   E+K ++R+ ER   
Sbjct: 449 ALTLENLRLAISVLVTGDLELARRLVERKKRVRRLERRSS 488

Length = 533

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PRK11637	428	AmiB activator; Provisional	99.26
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	99.05
COG4942	420	Membrane-bound metallopeptidase [Cell division and	98.57
PRK11637	428	AmiB activator; Provisional	98.44
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	98.24
PRK09039	343	hypothetical protein; Validated	98.15
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.07
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.96
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.95
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.91
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.89
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.88
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.79
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.72
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.72
PRK02224	880	chromosome segregation protein; Provisional	97.32
PHA02562	562	46 endonuclease subunit; Provisional	97.31
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.31
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.28
PHA02562	562	46 endonuclease subunit; Provisional	97.27
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.25
PRK04778	569	septation ring formation regulator EzrA; Provision	97.24
PRK03918	880	chromosome segregation protein; Provisional	97.21
PRK03918	880	chromosome segregation protein; Provisional	97.19
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.15
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.14
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.1
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.08
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.02
PRK01156	895	chromosome segregation protein; Provisional	96.96
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.86
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.84
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.84
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.8
PRK09039	343	hypothetical protein; Validated	96.73
PRK04863	1486	mukB cell division protein MukB; Provisional	96.58
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.49
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.48
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.48
PRK04863	1486	mukB cell division protein MukB; Provisional	96.38
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.35
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.34
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.33
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.32
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	96.32
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.3
PRK11281	1113	hypothetical protein; Provisional	96.22
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.13
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.12
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.06
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.03
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.03
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	96.0
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.96
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.89
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.89
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.87
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.84
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.82
COG4372	499	Uncharacterized protein conserved in bacteria with	95.8
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	95.67
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.65
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.64
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	95.61
PRK04778	569	septation ring formation regulator EzrA; Provision	95.56
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.55
PRK01156	895	chromosome segregation protein; Provisional	95.53
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.51
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.48
COG4372	499	Uncharacterized protein conserved in bacteria with	95.45
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	95.44
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	95.43
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.13
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.12
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.93
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	94.72
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.7
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	94.66
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.63
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	94.52
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.45
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.44
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	94.44
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	94.4
KOG0018	1141	consensus Structural maintenance of chromosome pro	94.25
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.24
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.19
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.11
PRK11281	1113	hypothetical protein; Provisional	94.08
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.0
KOG0979	1072	consensus Structural maintenance of chromosome pro	93.91
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.79
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.74
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.73
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.73
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.72
KOG0964	1200	consensus Structural maintenance of chromosome pro	93.66
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.64
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	93.59
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	93.58
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	93.32
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	93.13
PRK10884	206	SH3 domain-containing protein; Provisional	93.12
PRK10884	206	SH3 domain-containing protein; Provisional	93.01
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.83
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	92.8
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	92.76
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.59
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	92.54
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.52
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	92.37
KOG4673	961	consensus Transcription factor TMF, TATA element m	92.27
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.21
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	92.17
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	92.1
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	91.99
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.71
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	91.7
KOG0971	1243	consensus Microtubule-associated protein dynactin	91.66
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	91.56
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	91.46
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	91.45
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	91.43
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.23
KOG0018	1141	consensus Structural maintenance of chromosome pro	91.15
KOG0964	1200	consensus Structural maintenance of chromosome pro	91.09
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	91.09
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.02
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	90.83
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	90.78
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.77
KOG0971	1243	consensus Microtubule-associated protein dynactin	90.7
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	90.33
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	90.29
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	90.26
COG2433	652	Uncharacterized conserved protein [Function unknow	90.16
PF14282	106	FlxA: FlxA-like protein	90.14
KOG0963	629	consensus Transcription factor/CCAAT displacement	90.11
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	89.82
PF13514	1111	AAA_27: AAA domain	89.75
COG2433	652	Uncharacterized conserved protein [Function unknow	89.69
PRK10803	263	tol-pal system protein YbgF; Provisional	89.63
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.44
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	89.39
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	89.33
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.31
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	89.29
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	89.26
COG5185	622	HEC1 Protein involved in chromosome segregation, i	89.18
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	89.16
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	89.12
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	88.9
PRK04406	75	hypothetical protein; Provisional	88.88
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	88.86
PRK15396	78	murein lipoprotein; Provisional	88.58
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	88.54
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	88.22
PRK10929	1109	putative mechanosensitive channel protein; Provisi	87.98
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	87.93
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.64
PRK00295	68	hypothetical protein; Provisional	87.57
PRK02793	72	phi X174 lysis protein; Provisional	87.53
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	87.38
PRK00736	68	hypothetical protein; Provisional	87.37
PRK02119	73	hypothetical protein; Provisional	87.31
PRK04325	74	hypothetical protein; Provisional	87.26
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	87.07
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	86.47
PHA03332	1328	membrane glycoprotein; Provisional	86.39
PRK03947	140	prefoldin subunit alpha; Reviewed	86.31
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	86.07
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	85.96
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	85.92
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	85.54
PRK00846	77	hypothetical protein; Provisional	85.51
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.42
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	85.38
KOG0979	1072	consensus Structural maintenance of chromosome pro	85.26
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	85.24
PRK02119	73	hypothetical protein; Provisional	85.06
PRK04406	75	hypothetical protein; Provisional	84.43
PRK03947	140	prefoldin subunit alpha; Reviewed	84.3
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	84.19
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	84.1
PF14282	106	FlxA: FlxA-like protein	83.99
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	83.96
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	83.86
PRK10929	1109	putative mechanosensitive channel protein; Provisi	83.51
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	83.26
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	83.06
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	82.74
PRK04325	74	hypothetical protein; Provisional	82.7
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	82.67
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	82.64
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	82.55
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	82.51
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	82.39
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	82.19
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	82.05
PRK09343	121	prefoldin subunit beta; Provisional	81.67
KOG0288	459	consensus WD40 repeat protein TipD [General functi	81.53
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	81.5
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	81.39
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	81.16
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	80.93
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	80.57
PRK10476	346	multidrug resistance protein MdtN; Provisional	80.4
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	80.38
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	80.16
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	80.04

>PRK11637 AmiB activator; Provisional

Probab=99.26  E-value=4.4e-09  Score=103.20  Aligned_cols=145  Identities=18%  Similarity=0.315  Sum_probs=80.4

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHH
Q 023185           41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-----TLNAAEQVDKAH  115 (286)
Q Consensus        41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-----~~~~~eqi~ka~  115 (286)
                      ..+++++++++.++..++++++++..+|..++.+|..++..|+.++.+|..++.+|+.++.++     .++..+..++  
T Consensus        50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~--  127 (428)
T PRK11637         50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA--  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            334555555555555555666666666666666666666666666666666666666666555     2222222222  


Q ss_pred             HHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          116 ARADELEK-----------------------------------QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL  160 (286)
Q Consensus       116 ~Ri~eLek-----------------------------------~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~  160 (286)
                      .|++.+.+                                   .|+.+......+...+..|+....+++..+.++....
T Consensus       128 ~rlra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k  207 (428)
T PRK11637        128 AQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQ  207 (428)
T ss_pred             HHHHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444211                                   5666666666666666666666666666555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          161 EKLQKINDEQKSKIRKTERALKVAEEE  187 (286)
Q Consensus       161 ~~Lek~~~Eqk~~i~~lE~~lq~~Eee  187 (286)
                      ..|+....+++..+..++...+..+.+
T Consensus       208 ~~L~~~k~e~~~~l~~L~~~~~~~~~~  234 (428)
T PRK11637        208 QKLEQARNERKKTLTGLESSLQKDQQQ  234 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555444444444444333333

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.05  E-value=1.9e-07  Score=86.34  Aligned_cols=143  Identities=17%  Similarity=0.280  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--
Q 023185           46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK--  123 (286)
Q Consensus        46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek--  123 (286)
                      +++++......++.+++.+..++.+...+++..+.+++....+|..++.+|+.+..  .+..+.++++  +|+|.++.  
T Consensus        39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~--~I~~r~~~l~--~raRAmq~nG  114 (265)
T COG3883          39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE--NIVERQELLK--KRARAMQVNG  114 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHcC
Confidence            33333333333333333333333333333333333333333344444444433332  3455667777  78888544  


Q ss_pred             ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          124 ----------------------------------QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE  169 (286)
Q Consensus       124 ----------------------------------~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~E  169 (286)
                                                        +|+..+.+...+..+...++.....+.....+++..+..|+..+.+
T Consensus       115 ~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e  194 (265)
T COG3883         115 TATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAE  194 (265)
T ss_pred             ChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                              6888888888888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 023185          170 QKSKIRKTERALKVAEEEMMRAK  192 (286)
Q Consensus       170 qk~~i~~lE~~lq~~Eeei~kle  192 (286)
                      ++..+..+......+..+...+.
T Consensus       195 ~~~l~~~~aa~~a~~~~e~a~l~  217 (265)
T COG3883         195 KNALIAALAAKEASALGEKAALE  217 (265)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999998888888877766

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=98.57  E-value=5.2e-05  Score=74.30  Aligned_cols=160  Identities=19%  Similarity=0.285  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH------
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHAR------  117 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~~~~~eqi~ka~~R------  117 (286)
                      +++++.+++|.++++.+....++...+...|...+++|..++.+|......++.+.+.+ ..+..-..+.-+.|      
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666666666666666666666666666666666666666655555554 11111111111111      


Q ss_pred             ---HHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          118 ---ADE-----------------------------------LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK  159 (286)
Q Consensus       118 ---i~e-----------------------------------Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k  159 (286)
                         +..                                   +...|+.|.++...+..-...+++.+.++...+.+....
T Consensus       118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q  197 (420)
T COG4942         118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ  197 (420)
T ss_pred             HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               111                                   112788888888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 023185          160 LEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE  204 (286)
Q Consensus       160 ~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~~  204 (286)
                      ...+.....|++....+++..+..-+..+..+......+...|..
T Consensus       198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias  242 (420)
T COG4942         198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIAS  242 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999999999999999999999888888888887777777666643

>PRK11637 AmiB activator; Provisional

Probab=98.44  E-value=0.00013  Score=71.80  Aligned_cols=152  Identities=14%  Similarity=0.208  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHH----------
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-----TLNA----------  107 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-----~~~~----------  107 (286)
                      ++.+++++..++..++.++..+..+|......|+..+.+|..++.+|..++.+|+..+..+     ....          
T Consensus        66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vL  145 (428)
T PRK11637         66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLI  145 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence            3455555666666666666666666666666777777777777777777777777666554     0000          


Q ss_pred             ---------H------HHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          108 ---------A------EQVDKAH-ARADELEK-------QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ  164 (286)
Q Consensus       108 ---------~------eqi~ka~-~Ri~eLek-------~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Le  164 (286)
                               .      ..+..+. .-+..+..       ....+..++........+++..+.+++....+.+..+..|.
T Consensus       146 l~a~~~~~~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~  225 (428)
T PRK11637        146 LSGEESQRGERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLE  225 (428)
T ss_pred             hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0      0000000 11222333       34444444455555556777777777777777777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          165 KINDEQKSKIRKTERALKVAEEEMMRAKFE  194 (286)
Q Consensus       165 k~~~Eqk~~i~~lE~~lq~~Eeei~kle~E  194 (286)
                      ....++...+.++++..+.+...|.++++.
T Consensus       226 ~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~  255 (428)
T PRK11637        226 SSLQKDQQQLSELRANESRLRDSIARAERE  255 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888876543

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.24  E-value=0.0013  Score=61.25  Aligned_cols=181  Identities=20%  Similarity=0.205  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023185           47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID  126 (286)
Q Consensus        47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie  126 (286)
                      +...++++.++++....+..+|..++..|....+.+.+...+|+.++.+|..++                      ..|+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~----------------------~eI~   90 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ----------------------KEIA   90 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHH
Confidence            666777777777777777777777777777766666666666666666666665                      3344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          127 NLKKESEKQQKEKEALEARAIEA----------------------EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA  184 (286)
Q Consensus       127 ~Lk~eie~~~~kk~eLEa~~~e~----------------------e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~  184 (286)
                      .++..|..+   .+.|..|++.+                      ..++..++..++...++...++.+-..++.....+
T Consensus        91 ~~~~~I~~r---~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l  167 (265)
T COG3883          91 ELKENIVER---QELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAAL  167 (265)
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            444444443   34444555444                      56788888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhhhhhHHH-----hhhhccCCchhHHHHHHHHHHHHhhhhhhhCcchhHHHHHHHHHhHHhhhhhchhhH
Q 023185          185 EEEMMRAKFEATSRSKEL-----TEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHV  259 (286)
Q Consensus       185 Eeei~kle~Ea~~~a~ql-----~~~~g~~l~Pwla~~~~~~~~~~~~~w~~hg~p~~~~~~~~~~~~~~~~~~~~~ph~  259 (286)
                      +..+..+..-......++     ......-+.--++...+.....+....           -++|.-.+  +.-|+.|--
T Consensus       168 ~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~-----------~qka~a~a--~a~~~a~~~  234 (265)
T COG3883         168 EDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE-----------EQKALAEA--AAAEAAKQE  234 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHH--HHHHHHHhh
Confidence            888777655555443333     122233444445555555555554444           44444332  345677777


Q ss_pred             Hhhhhh
Q 023185          260 ETIKAV  265 (286)
Q Consensus       260 ~~~~~~  265 (286)
                      .+.++.
T Consensus       235 ~~~~a~  240 (265)
T COG3883         235 AAAKAA  240 (265)
T ss_pred             hhhhhh
Confidence            666655

>PRK09039 hypothetical protein; Validated

Probab=98.15  E-value=0.0016  Score=62.69  Aligned_cols=162  Identities=23%  Similarity=0.287  Sum_probs=69.6

Q ss_pred             hhHHHHHHHHHHHHHhhhhhcccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 023185            3 ASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI   82 (286)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i   82 (286)
                      .+-||++++|++++|+-+..                   -+..++...+.++..|+++|.++..-+.--......++..+
T Consensus        23 ~~~ll~~~~f~l~~f~~~q~-------------------fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l   83 (343)
T PRK09039         23 LSTLLLVIMFLLTVFVVAQF-------------------FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSV   83 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            45667667776666654221                   12334444455555555555554444433334444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           83 QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK  162 (286)
Q Consensus        83 ~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~  162 (286)
                      ..+..++..++..-..++.... ........++.++..+...+...+....+.+.....|......+...+..++..++.
T Consensus        84 ~~l~~~l~~a~~~r~~Le~~~~-~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~  162 (343)
T PRK09039         84 ANLRASLSAAEAERSRLQALLA-ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA  162 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444332110 000101112234444444333333333333333333333333333334444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 023185          163 LQKINDEQKSKIRKTERALKVA  184 (286)
Q Consensus       163 Lek~~~Eqk~~i~~lE~~lq~~  184 (286)
                      .+....+++.+|+.+...+..+
T Consensus       163 ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        163 SEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555544444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.07  E-value=0.0018  Score=54.98  Aligned_cols=60  Identities=25%  Similarity=0.387  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK  102 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk  102 (286)
                      ++.+.+.+..+...++.++..+.++...++..|..++..+..++.++..++..+..++..
T Consensus         5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~   64 (143)
T PF12718_consen    5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK   64 (143)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666666666666666666666666666666666666666666666666555433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.96  E-value=0.0045  Score=52.57  Aligned_cols=133  Identities=23%  Similarity=0.304  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023185           47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID  126 (286)
Q Consensus        47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie  126 (286)
                      |+.++..........+....+++.++....+++.+|..++..+..|+.+|+.++..+        ..++..+.+..+   
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l--------~~~k~~lee~~~---   70 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL--------KEAKEKLEESEK---   70 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHH---
Confidence            455566666666666666666666666666666666666666666666666665333        111111111111   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                       .....+.+..+...||......+..+.+...++........+..++...++......+..+..+
T Consensus        71 -~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel  134 (143)
T PF12718_consen   71 -RKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL  134 (143)
T ss_pred             -HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             1111223333344444444444444445555554444444444555555554444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.95  E-value=0.0074  Score=64.97  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhhhhhhhCcchhHHHHHHHHHhHHh
Q 023185          216 VHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQ  250 (286)
Q Consensus       216 ~~~~~~~~~~~~~w~~hg~p~~~~~~~~~~~~~~~  250 (286)
                      .+...+....++..+..| |=|-.+++--.....+
T Consensus       457 ~~l~~lk~~k~dkvs~FG-~~m~~lL~~I~r~~~~  490 (1074)
T KOG0250|consen  457 EELKDLKKTKTDKVSAFG-PNMPQLLRAIERRKRR  490 (1074)
T ss_pred             HHHHHHHhcccchhhhcc-hhhHHHHHHHHHHHhc
Confidence            344556666777788888 7777777766655544

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.91  E-value=0.0028  Score=57.81  Aligned_cols=148  Identities=22%  Similarity=0.354  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023185           47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID  126 (286)
Q Consensus        47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie  126 (286)
                      +..++..+...+.........++.......+++..+..+...|..++.+++.++..+ ......+..+.++..+.++-..
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL-~~~~~kL~~~e~~~de~er~~k   81 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERL-EEATEKLEEAEKRADESERARK   81 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-CHHHHHHHHHHHHHHHHCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555666666666666666666666666666555444 3334445555555555444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185          127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA  195 (286)
Q Consensus       127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea  195 (286)
                      .|.........+...|+.....+.....+...++.............+...+.....++..+..++.+.
T Consensus        82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el  150 (237)
T PF00261_consen   82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL  150 (237)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence            444444444444444444444444444444444433333333333333333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.89  E-value=0.0057  Score=66.16  Aligned_cols=44  Identities=34%  Similarity=0.450  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE   87 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~   87 (286)
                      ..++..++.++..++..+.....++..+...+...+..+.....
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~  336 (1164)
T TIGR02169       293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA  336 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444443333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.88  E-value=0.014  Score=53.71  Aligned_cols=18  Identities=17%  Similarity=0.032  Sum_probs=11.2

Q ss_pred             ccCCchhHHHHHHHHHHH
Q 023185          207 SAWLPPWLAVHLLQCQSL  224 (286)
Q Consensus       207 g~~l~Pwla~~~~~~~~~  224 (286)
                      -.-+||-|...|.+....
T Consensus       169 ~~~l~~ell~~yeri~~~  186 (239)
T COG1579         169 KEKLDPELLSEYERIRKN  186 (239)
T ss_pred             HHhcCHHHHHHHHHHHhc
Confidence            345677777777765543

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.79  E-value=0.011  Score=63.75  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD   84 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e   84 (286)
                      ..++..++..+..++..+.....++......+..+...+..
T Consensus       676 ~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~  716 (1179)
T TIGR02168       676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ  716 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.72  E-value=0.026  Score=51.47  Aligned_cols=41  Identities=22%  Similarity=0.405  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK   85 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~   85 (286)
                      .++..++.++..++...+.....+......+..+++...+.
T Consensus        36 ~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~   76 (237)
T PF00261_consen   36 AEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADES   76 (237)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444443333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.72  E-value=0.016  Score=62.60  Aligned_cols=145  Identities=19%  Similarity=0.336  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh------hHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS-------SLQKKE------TLNAAEQ  110 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~-------~~qkkl------~~~~~eq  110 (286)
                      ..+++.+...+...+..++.+.+.+......+....+.+.+++++|..+-.+.+       ...+.+      -.+.+.+
T Consensus       280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~  359 (1074)
T KOG0250|consen  280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE  359 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555444444444444444444444444444444444444444444433333       332222      1222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          111 VDKAHARADELEKQIDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM  188 (286)
Q Consensus       111 i~ka~~Ri~eLek~Ie~Lk~eie~~~~kk-~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei  188 (286)
                      +..++.+++.+++.++.+.+++...+... ..+..++.+++.+.+.++..++.++.........++.+..+...-+++.
T Consensus       360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~  438 (1074)
T KOG0250|consen  360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK  438 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            33444444445555555555555554444 4455555555555555555555555555555544444444444444443

>PRK02224 chromosome segregation protein; Provisional

Probab=97.32  E-value=0.083  Score=56.32  Aligned_cols=26  Identities=19%  Similarity=0.525  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhh
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELK   69 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~   69 (286)
                      ...++.+...+..++..++++..++.
T Consensus       474 ~~~~~~~~~~~~~le~~l~~~~~~~e  499 (880)
T PRK02224        474 RERVEELEAELEDLEEEVEEVEERLE  499 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.31  E-value=0.12  Score=51.92  Aligned_cols=31  Identities=10%  Similarity=0.027  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          161 EKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       161 ~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      ..++.........+..+......++.++.++
T Consensus       340 ~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l  370 (562)
T PHA02562        340 LELKNKISTNKQSLITLVDKAKKVKAAIEEL  370 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333444444433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.31  E-value=0.24  Score=54.14  Aligned_cols=158  Identities=21%  Similarity=0.259  Sum_probs=112.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA  118 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri  118 (286)
                      -+..+.++-...+++-..++...+.+..-|..-|.....++.-|+.....|...+.-|+..+.+. ..++..+..|..|+
T Consensus      1543 ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t-~~aE~~~~~a~q~~ 1621 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEET-AAAEKLATSATQQL 1621 (1758)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            34566777778888888888888888888888888888899999999999998888888887666 66778888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185          119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS  197 (286)
Q Consensus       119 ~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~  197 (286)
                      ++|...++.|+.+..++-..-...+.-+..+...-..++...+.+++........+.+--.....+.+....+..++.+
T Consensus      1622 ~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~ 1700 (1758)
T KOG0994|consen 1622 GELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEK 1700 (1758)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            9999999999998887766665555555555544445555555555554444444444444444444444444444443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.28  E-value=0.13  Score=50.76  Aligned_cols=154  Identities=15%  Similarity=0.252  Sum_probs=85.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------h-----
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE---------T-----  104 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl---------~-----  104 (286)
                      +-..+++.+...+.+...|++++.+...++..++..|.+.+..+..++..|..+...|..++..-         -     
T Consensus        46 ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~  125 (420)
T COG4942          46 EIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQ  125 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555566666666666666666666666666666666666666666666666665554322         0     


Q ss_pred             ----------HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 023185          105 ----------LNAAEQVD--------------KAHARADELEKQIDNLKKESEKQQKEKEAL-------EARAIEAEKKI  153 (286)
Q Consensus       105 ----------~~~~eqi~--------------ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eL-------Ea~~~e~e~k~  153 (286)
                                +.-.++..              .-..+++.|......|......+..+..+|       -++...+...+
T Consensus       126 r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~  205 (420)
T COG4942         126 RSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLL  205 (420)
T ss_pred             hccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      00000000              011356666664444444444443334333       34444455556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          154 SDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK  192 (286)
Q Consensus       154 ~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle  192 (286)
                      .+-...+.+++......+..+.++..+-..+..+|.+++
T Consensus       206 ~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         206 EERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            666666667777777777777777776666666666665

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.27  E-value=0.07  Score=53.74  Aligned_cols=56  Identities=14%  Similarity=0.266  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      +.+++.+..+...++.+++.+..+|..+...++.....+..+..++..+...+..+
T Consensus       219 ~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~  274 (562)
T PHA02562        219 QNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF  274 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333332332333333333333333333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.25  E-value=0.12  Score=57.19  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR  190 (286)
Q Consensus       156 l~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k  190 (286)
                      ++..+...+....+....++.++..+..+...+..
T Consensus       875 l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  909 (1163)
T COG1196         875 LEDELKELEEEKEELEEELRELESELAELKEEIEK  909 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.24  E-value=0.31  Score=49.94  Aligned_cols=113  Identities=17%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185          118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS  197 (286)
Q Consensus       118 i~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~  197 (286)
                      ++.+++++..+.+..................+.....++...++.+++...+....+..+......+...+.++......
T Consensus       350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~  429 (569)
T PRK04778        350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE  429 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555554444444455666777778888888888888888888888888888888888888777776


Q ss_pred             hhHHHhhhhccCCchhHHHHHHHHHHHHhhhhh
Q 023185          198 RSKELTEVHSAWLPPWLAVHLLQCQSLIETHWN  230 (286)
Q Consensus       198 ~a~ql~~~~g~~l~Pwla~~~~~~~~~~~~~w~  230 (286)
                      ..+.+...+---+|..+-..+............
T Consensus       430 ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~  462 (569)
T PRK04778        430 IKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAE  462 (569)
T ss_pred             HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            666666655334666655555555444444443

>PRK03918 chromosome segregation protein; Provisional

Probab=97.21  E-value=0.16  Score=53.92  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           75 VAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        75 I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      +..+.+.+..++.++..+...+...
T Consensus       202 ~~~l~~ei~~l~~e~~~l~~~~~~~  226 (880)
T PRK03918        202 LEEVLREINEISSELPELREELEKL  226 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444433333

>PRK03918 chromosome segregation protein; Provisional

Probab=97.19  E-value=0.12  Score=54.86  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVA  184 (286)
Q Consensus       151 ~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~  184 (286)
                      ..+..++..+..+.......+..+..++..+..+
T Consensus       666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~  699 (880)
T PRK03918        666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKL  699 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444444444444443333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.15  E-value=0.35  Score=49.44  Aligned_cols=93  Identities=20%  Similarity=0.313  Sum_probs=54.4

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-----HHHHHHHHHH
Q 023185           41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-T-----LNAAEQVDKA  114 (286)
Q Consensus        41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~-----~~~~eqi~ka  114 (286)
                      ..++.+++.......+|......+.++...+...+..++..+.....+...|..+...+.... .     -....+..++
T Consensus       139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~  218 (546)
T PF07888_consen  139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA  218 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777777666666666666666666666666666666666665555443322 0     1111333444


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 023185          115 HARADELEKQIDNLKKESE  133 (286)
Q Consensus       115 ~~Ri~eLek~Ie~Lk~eie  133 (286)
                      ..||..|+..|..+.....
T Consensus       219 ~~ri~~LEedi~~l~qk~~  237 (546)
T PF07888_consen  219 RQRIRELEEDIKTLTQKEK  237 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5667777766666655543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.14  E-value=0.19  Score=46.24  Aligned_cols=52  Identities=27%  Similarity=0.387  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL   96 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI   96 (286)
                      ..+..++..+..+......+..++..++.++.+.+..|.+.+..+..++..+
T Consensus        31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.10  E-value=0.15  Score=52.80  Aligned_cols=58  Identities=28%  Similarity=0.377  Sum_probs=34.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      .-.+++++++.++.++...+..+..+++.+...+.+...++.+.......++.++...
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~  382 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK  382 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355666666666666666666666666666666666666666555555555555433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.08  E-value=0.29  Score=53.58  Aligned_cols=73  Identities=21%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185          124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT  196 (286)
Q Consensus       124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~  196 (286)
                      .+...+.++.--..+...|..+.....+++.++...+..+.....+.+..+..+...+.....++.+...+..
T Consensus       494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~  566 (1293)
T KOG0996|consen  494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP  566 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence            3333344444444444455555555555666666666666666666666666666555555555555443333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.02  E-value=0.21  Score=57.52  Aligned_cols=49  Identities=27%  Similarity=0.380  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK  176 (286)
Q Consensus       128 Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~  176 (286)
                      ++..++.........+.....+..++.+.+..+..+++.+.+....|+.
T Consensus      1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~e 1108 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKE 1108 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333

>PRK01156 chromosome segregation protein; Provisional

Probab=96.96  E-value=0.39  Score=51.51  Aligned_cols=31  Identities=13%  Similarity=0.271  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          152 KISDLSAKLEKLQKINDEQKSKIRKTERALK  182 (286)
Q Consensus       152 k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq  182 (286)
                      .+..+...+..+.....+...++..+...+.
T Consensus       689 ~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~  719 (895)
T PRK01156        689 ALDDAKANRARLESTIEILRTRINELSDRIN  719 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3333333333333333333333333333333

>TIGR00606 rad50 rad50

Probab=96.86  E-value=0.77  Score=51.61  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=13.2

Q ss_pred             hhhhccCcCchHHHHHHHHHh
Q 023185          263 KAVSSFSYSSIPEILKYIEEL  283 (286)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~  283 (286)
                      ++-..||..-+.+|-+.|.+|
T Consensus      1129 ~~~~~~~~~~~~~~n~~~~~~ 1149 (1311)
T TIGR00606      1129 QAIMKFHSMKMEEINKIIRDL 1149 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344566666666776666665

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=96.84  E-value=1.2  Score=50.03  Aligned_cols=17  Identities=0%  Similarity=-0.068  Sum_probs=8.9

Q ss_pred             hhhHHhhhhhhccCcCc
Q 023185          256 QPHVETIKAVSSFSYSS  272 (286)
Q Consensus       256 ~ph~~~~~~~~~~~~~~  272 (286)
                      ...+.+++..++-+...
T Consensus       997 ~~~i~~l~kel~~~~~~ 1013 (1311)
T TIGR00606       997 NEDMRLMRQDIDTQKIQ 1013 (1311)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44555555555544443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.84  E-value=0.71  Score=47.24  Aligned_cols=50  Identities=16%  Similarity=0.255  Sum_probs=22.5

Q ss_pred             HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      ++.++...+....++.+....+.....+++..+..++.++.....+...+
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L  190 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQL  190 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.80  E-value=0.39  Score=45.87  Aligned_cols=45  Identities=22%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        56 eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      .|+...+.+..+...+...+..+...+..+....+.|..++..++
T Consensus       153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk  197 (325)
T PF08317_consen  153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLK  197 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444443

>PRK09039 hypothetical protein; Validated

Probab=96.73  E-value=0.31  Score=47.03  Aligned_cols=50  Identities=22%  Similarity=0.246  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK   94 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~   94 (286)
                      .+|++++.+|.+|-...+--......++..|.++...+...+.....|++
T Consensus        53 ~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~  102 (343)
T PRK09039         53 SALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA  102 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444333333333333333333333333333333333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.58  E-value=1.6  Score=49.77  Aligned_cols=43  Identities=7%  Similarity=0.190  Sum_probs=23.0

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK  101 (286)
Q Consensus        59 s~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk  101 (286)
                      .++.+....|...+..+......+.++..++..|+.++.....
T Consensus       293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k  335 (1486)
T PRK04863        293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD  335 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555555555555555555555555555555543

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.49  E-value=0.53  Score=49.62  Aligned_cols=96  Identities=15%  Similarity=0.237  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023185           42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL  121 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eL  121 (286)
                      -++.++..++..+....+.=.++..+|..++..=..+..+|..++.+...|++++..+.... ..+...+...++|+++.
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR-q~DKq~l~~LEkrL~eE  500 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQAR-QQDKQSLQQLEKRLAEE  500 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            45667777777777776666666666666665555556666666666666666666664433 22333344445566665


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 023185          122 EKQIDNLKKESEKQQKE  138 (286)
Q Consensus       122 ek~Ie~Lk~eie~~~~k  138 (286)
                      .+.=..+++++.+.+..
T Consensus       501 ~~~R~~lEkQL~eErk~  517 (697)
T PF09726_consen  501 RRQRASLEKQLQEERKA  517 (697)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555444433

; GO: 0016021 integral to membrane

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.48  E-value=1.1  Score=47.34  Aligned_cols=106  Identities=24%  Similarity=0.387  Sum_probs=72.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----------
Q 023185           42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQV----------  111 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi----------  111 (286)
                      .++.+|.+++.+-.+|++++..+++....=...|..+|+.+.+-...-..++.++..-++.- ..+++..          
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r-~~ee~~aar~~~~~~~~  535 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKAR-KEEEEKAARALAQAQAT  535 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHhhhhccccchhc
Confidence            45667777777778888887777777777777788888888888888888888877766433 1110100          


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          112 -----DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE  148 (286)
Q Consensus       112 -----~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e  148 (286)
                           .--..|.++|+.++..|+.++..-......+|....+
T Consensus       536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~  577 (697)
T PF09726_consen  536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQE  577 (697)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1122577778888888888877777777777766543

; GO: 0016021 integral to membrane

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.88  Score=48.20  Aligned_cols=62  Identities=21%  Similarity=0.293  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      .++.++..|+.++.+|...+-++.-.+-...+.|+...+...-.-.+|..|+.+|.+.|.++
T Consensus       441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl  502 (1118)
T KOG1029|consen  441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKL  502 (1118)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677777777777777777777777777777777777777788888888888887777

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.38  E-value=2.6  Score=48.12  Aligned_cols=43  Identities=21%  Similarity=0.237  Sum_probs=22.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023185           42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD   84 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e   84 (286)
                      .++.+..+...++...+..+..+...+.++...+..++.++..
T Consensus       290 g~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEk  332 (1486)
T PRK04863        290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQA  332 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555544444433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.35  E-value=0.11  Score=45.95  Aligned_cols=100  Identities=23%  Similarity=0.304  Sum_probs=28.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023185           42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL  121 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eL  121 (286)
                      .+...+-.++..+.++.....+..++|..+...+..++..+......|..+..++..++.++        ..-...++++
T Consensus        71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~--------~~l~~~l~ek  142 (194)
T PF08614_consen   71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI--------KDLEEELKEK  142 (194)
T ss_dssp             -------------------------------------------HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            34555556666666666666666666666666666666666666666666666666665222        1111344455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          122 EKQIDNLKKESEKQQKEKEALEARAIEA  149 (286)
Q Consensus       122 ek~Ie~Lk~eie~~~~kk~eLEa~~~e~  149 (286)
                      .+.++.++.++...+-....++.+...+
T Consensus       143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l  170 (194)
T PF08614_consen  143 NKANEILQDELQALQLQLNMLEEKLRKL  170 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555544444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.34  E-value=1  Score=49.55  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHH
Q 023185          178 ERALKVAEEEMMRAKFEATSRSKEL  202 (286)
Q Consensus       178 E~~lq~~Eeei~kle~Ea~~~a~ql  202 (286)
                      ...+..+...+..+..+...+.+.+
T Consensus       541 ~~~l~~~k~~l~~~k~e~~~~~k~l  565 (1293)
T KOG0996|consen  541 KTELDDLKEELPSLKQELKEKEKEL  565 (1293)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhH
Confidence            3333444444444444444444444

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.33  E-value=2.1  Score=46.55  Aligned_cols=60  Identities=25%  Similarity=0.450  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD----KSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e----~~~eI~~Lq~eI~~~qkkl  103 (286)
                      ...+..+...+.+++++|.+...-++..+..|..+++.+.+    +...+..+..+|..+...+
T Consensus       740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~  803 (1174)
T KOG0933|consen  740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA  803 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH
Confidence            34556666666667777766666666666666666655543    4455566666666655444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.32  E-value=0.56  Score=43.88  Aligned_cols=34  Identities=15%  Similarity=0.145  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM  189 (286)
Q Consensus       156 l~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~  189 (286)
                      ++..+..+......+-..++.+-.-.-.++.+|.
T Consensus       267 le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa  300 (312)
T PF00038_consen  267 LEEELAELREEMARQLREYQELLDVKLALDAEIA  300 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3333333333333333333333333333333333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=96.32  E-value=1  Score=42.71  Aligned_cols=57  Identities=18%  Similarity=0.270  Sum_probs=32.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS   97 (286)
Q Consensus        41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~   97 (286)
                      +.++.+..++..++.++.++.+++++++..+...-++....+..+-..+..+-..++
T Consensus        44 deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~  100 (294)
T COG1340          44 DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN  100 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555555555566666666666666666555555555555555555555544444

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.30  E-value=0.98  Score=43.39  Aligned_cols=18  Identities=17%  Similarity=0.289  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 023185          174 IRKTERALKVAEEEMMRA  191 (286)
Q Consensus       174 i~~lE~~lq~~Eeei~kl  191 (286)
                      +..+..++..++..+..+
T Consensus       248 l~~~~~~l~~~~~~l~~~  265 (423)
T TIGR01843       248 LTEAQARLAELRERLNKA  265 (423)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK11281 hypothetical protein; Provisional

Probab=96.22  E-value=0.8  Score=50.72  Aligned_cols=48  Identities=13%  Similarity=0.049  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023185          155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL  202 (286)
Q Consensus       155 el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql  202 (286)
                      +.+..+.+.+....+.+.++..+......++..+.......+.+..++
T Consensus       132 q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L  179 (1113)
T PRK11281        132 QTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL  179 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444444444444444444444444443333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.13  E-value=1.9  Score=43.95  Aligned_cols=42  Identities=29%  Similarity=0.212  Sum_probs=18.8

Q ss_pred             HHHHHHHHHhHHhhhhhch---hhHHhhhhhhccCcCchHHHHHH
Q 023185          238 DVAIQKALEKKAQAGKWVQ---PHVETIKAVSSFSYSSIPEILKY  279 (286)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~---ph~~~~~~~~~~~~~~~~~~~~~  279 (286)
                      ..|..+|.+.-..|.+++-   -+|+.+|..=+.+-+-+-+..+-
T Consensus       466 ~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e  510 (522)
T PF05701_consen  466 ESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKE  510 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555445554432   34555554444333333333333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.12  E-value=2.7  Score=45.76  Aligned_cols=16  Identities=25%  Similarity=0.551  Sum_probs=9.0

Q ss_pred             HHHHHHhHHhhhhhch
Q 023185          241 IQKALEKKAQAGKWVQ  256 (286)
Q Consensus       241 ~~~~~~~~~~~~~~~~  256 (286)
                      ..+..++...=+.|.-
T Consensus       925 ~~k~v~~l~~k~~wi~  940 (1174)
T KOG0933|consen  925 ARKEVEKLLKKHEWIG  940 (1174)
T ss_pred             HHHHHHHHHHhccchh
Confidence            3445555555566765

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.06  E-value=2  Score=44.37  Aligned_cols=120  Identities=20%  Similarity=0.296  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh----hH-H------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 023185           78 KEKAIQDKSERIVSLQKELSSLQKKE----TL-N------------AAEQVDKAHARADELEKQIDNLKKESEKQQKEK-  139 (286)
Q Consensus        78 ~e~~i~e~~~eI~~Lq~eI~~~qkkl----~~-~------------~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk-  139 (286)
                      .+..+...+..|..++..|..+++++    +. +            .=.++..|+.||..+++.++.|..+....+... 
T Consensus       194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~  273 (629)
T KOG0963|consen  194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK  273 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            34445555555555555555555554    11 0            125677899999999999999999988877665 


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185          140 -----------EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS  197 (286)
Q Consensus       140 -----------~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~  197 (286)
                                 ..|-.+=+.+.....+++.....+.........+|..+++.+...-..+.++....+.
T Consensus       274 ~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~  342 (629)
T KOG0963|consen  274 LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS  342 (629)
T ss_pred             hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                       1222222233334445555566666777777888888888888777777776665553

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.03  E-value=0.21  Score=44.11  Aligned_cols=104  Identities=16%  Similarity=0.274  Sum_probs=37.6

Q ss_pred             CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023185           40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD  119 (286)
Q Consensus        40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~  119 (286)
                      ...++.++.++.....++...+...+.++..++..+......|..+...+..|+.+|..+...+        ..-++-+.
T Consensus        76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l--------~ek~k~~e  147 (194)
T PF08614_consen   76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEEL--------KEKNKANE  147 (194)
T ss_dssp             --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence            4445666666666666666666666677777777777777777777777777776666665333        22223444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEK  151 (286)
Q Consensus       120 eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~  151 (286)
                      .+.+++..|.-+......+...|+....++..
T Consensus       148 ~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~  179 (194)
T PF08614_consen  148 ILQDELQALQLQLNMLEEKLRKLEEENRELVE  179 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.03  E-value=2.2  Score=47.71  Aligned_cols=62  Identities=18%  Similarity=0.356  Sum_probs=36.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      +...++.+++.+...+..+....++..+.+......++.....+......+...+..+..++
T Consensus       601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (1201)
T PF12128_consen  601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK  662 (1201)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            44466777777777666666666666666555555555555555555555555544444444

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=96.00  E-value=0.66  Score=37.64  Aligned_cols=47  Identities=32%  Similarity=0.471  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK  162 (286)
Q Consensus       116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~  162 (286)
                      .|+.+|+..|.++...++..+.-+-+|+.+....++-.+.++-++..
T Consensus        58 qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e  104 (107)
T PF09304_consen   58 QRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence            58888888888888888886666667777777777777666665544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.96  E-value=2.9  Score=44.69  Aligned_cols=27  Identities=19%  Similarity=0.307  Sum_probs=10.2

Q ss_pred             HHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 023185           57 LESHIDEKTQELKGKDEVVAQKEKAIQ   83 (286)
Q Consensus        57 Les~i~e~~~eL~~~d~~I~q~e~~i~   83 (286)
                      +++.++...-+|..++.+|-.+++.+.
T Consensus       285 mK~k~d~~~~eL~rk~~E~~~~qt~l~  311 (775)
T PF10174_consen  285 MKSKMDRLKLELSRKKSELEALQTRLE  311 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444433333333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.89  E-value=0.94  Score=38.51  Aligned_cols=57  Identities=25%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      ..++...+.+.+.|+..+..+..+|.........+..........|..|+.+|..+.
T Consensus         9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt   65 (140)
T PF10473_consen    9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT   65 (140)
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555555555543

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.89  E-value=0.97  Score=39.35  Aligned_cols=20  Identities=35%  Similarity=0.536  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 023185          116 ARADELEKQIDNLKKESEKQ  135 (286)
Q Consensus       116 ~Ri~eLek~Ie~Lk~eie~~  135 (286)
                      .|+..+...+..+..+....
T Consensus       130 ~~l~~l~~~~~~~~~e~~~l  149 (191)
T PF04156_consen  130 ERLDSLDESIKELEKEIREL  149 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.87  E-value=1.8  Score=41.46  Aligned_cols=19  Identities=5%  Similarity=0.013  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHhhhhhhhC
Q 023185          215 AVHLLQCQSLIETHWNAHG  233 (286)
Q Consensus       215 a~~~~~~~~~~~~~w~~hg  233 (286)
                      ..+...+.......-..||
T Consensus       270 ~~Ei~~Lk~~~~~Le~l~g  288 (312)
T smart00787      270 FKEIEKLKEQLKLLQSLTG  288 (312)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            3333344433333333443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.84  E-value=1.6  Score=40.80  Aligned_cols=64  Identities=20%  Similarity=0.263  Sum_probs=43.0

Q ss_pred             CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      ...+..++.+++..|..+......+.-++..+...++.....+.........++.+|..+.+.+
T Consensus        49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~l  112 (312)
T PF00038_consen   49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDL  112 (312)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4456777777777777777777777777777777777766666666666666666666665444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.82  E-value=0.99  Score=43.14  Aligned_cols=44  Identities=16%  Similarity=0.190  Sum_probs=19.3

Q ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        56 eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      .|....+.+..+...+...+..+...+-.+....+.|..++..+
T Consensus       148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L  191 (312)
T smart00787      148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQL  191 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.80  E-value=2.2  Score=42.05  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEK  151 (286)
Q Consensus       119 ~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~  151 (286)
                      ..|+.++-+|+..-+.+...-..|..+++.++.
T Consensus       182 ~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~  214 (499)
T COG4372         182 TQLKSQVLDLKLRSAQIEQEAQNLATRANAAQA  214 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555555445444444433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=95.67  E-value=2  Score=40.71  Aligned_cols=67  Identities=22%  Similarity=0.233  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhh
Q 023185          140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVH  206 (286)
Q Consensus       140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~~~~  206 (286)
                      .+|-+....+.....++...+..+-...+++-..+-++-.....+-.+.+.+-.+.-....++...|
T Consensus       161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~  227 (294)
T COG1340         161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELH  227 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3344444444444444555555554444444444444444444444444444444444444443333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.65  E-value=3.3  Score=43.03  Aligned_cols=142  Identities=13%  Similarity=0.218  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA--EQVDKAHARADEL  121 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~--eqi~ka~~Ri~eL  121 (286)
                      ..+..+-...+.+|+.+++++..++..+..++..+...+..+..++.....+...++....+..+  .-+..+...+..|
T Consensus       320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL  399 (594)
T PF05667_consen  320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKL  399 (594)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            44456677788888888888888888777777777777777777777777777777655422211  1122233344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM  188 (286)
Q Consensus       122 ek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei  188 (286)
                      +..|+.-...+..+   ...++..+.-+...+..+......-......+...+..+....+.+..++
T Consensus       400 ~~~v~~s~~rl~~L---~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~  463 (594)
T PF05667_consen  400 QALVEASEQRLVEL---AQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEI  463 (594)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444443   24445555555555555444443333333333333334443333333333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.64  E-value=2.2  Score=40.79  Aligned_cols=28  Identities=18%  Similarity=0.203  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           71 KDEVVAQKEKAIQDKSERIVSLQKELSS   98 (286)
Q Consensus        71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~   98 (286)
                      +++-.+.++..+..+......|...+..
T Consensus       147 l~gl~~~L~~~~~~L~~D~~~L~~~~~~  174 (325)
T PF08317_consen  147 LEGLKEGLEENLELLQEDYAKLDKQLEQ  174 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444333333

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=95.61  E-value=1.7  Score=47.20  Aligned_cols=168  Identities=18%  Similarity=0.223  Sum_probs=83.3

Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHH
Q 023185           36 DAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKA  114 (286)
Q Consensus        36 ~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~~~~~eqi~ka  114 (286)
                      ......++.-++-+++.+|.-|+.++++....+..+..+|+.++.++..+..++.....+-.+...-. ++++-.+-.. 
T Consensus       168 ~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~ae-  246 (1195)
T KOG4643|consen  168 VVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAE-  246 (1195)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh-
Confidence            33456677777777777777777777776666666666666555555555555544444433332111 1110000000 


Q ss_pred             HHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          115 HARADE--LEK--QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL--EKLQKINDEQKSKIRKTERALKVAEEEM  188 (286)
Q Consensus       115 ~~Ri~e--Lek--~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~--~~Lek~~~Eqk~~i~~lE~~lq~~Eeei  188 (286)
                        |..-  -++  .++-++...+..+.....|.+...=++..+.-+...-  ..++..+-..+.+++.+.-....-..++
T Consensus       247 --r~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kt  324 (1195)
T KOG4643|consen  247 --RPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKT  324 (1195)
T ss_pred             --cCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence              0000  011  2333555555555444444444444444444444333  4555666666666666666666666666


Q ss_pred             HHHHHHhhhhhHHHhhhh
Q 023185          189 MRAKFEATSRSKELTEVH  206 (286)
Q Consensus       189 ~kle~Ea~~~a~ql~~~~  206 (286)
                      .++..|..++..+-...+
T Consensus       325 eeL~eEnstLq~q~eqL~  342 (1195)
T KOG4643|consen  325 EELHEENSTLQVQKEQLD  342 (1195)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            665555554433333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.56  E-value=3.1  Score=42.70  Aligned_cols=25  Identities=12%  Similarity=0.258  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           77 QKEKAIQDKSERIVSLQKELSSLQK  101 (286)
Q Consensus        77 q~e~~i~e~~~eI~~Lq~eI~~~qk  101 (286)
                      .+...+.....+...|..+|+.++.
T Consensus       314 ~l~~~l~~~~e~~~~l~~Ei~~l~~  338 (569)
T PRK04778        314 TLPDFLEHAKEQNKELKEEIDRVKQ  338 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444455555554443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=1.2  Score=47.24  Aligned_cols=59  Identities=7%  Similarity=0.120  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK  102 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk  102 (286)
                      +.+++--+.++.++..++..-...+-.+.....+++.++..+..++..|...|-++...
T Consensus       408 qRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~  466 (1118)
T KOG1029|consen  408 QRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD  466 (1118)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec
Confidence            34444455666677666666666666667777777777777777777777666655433

>PRK01156 chromosome segregation protein; Provisional

Probab=95.53  E-value=3.6  Score=44.25  Aligned_cols=18  Identities=33%  Similarity=0.447  Sum_probs=7.6

Q ss_pred             hhHHHHHHHHHHHHHHHh
Q 023185           42 PLKIELDQLKSKIRSLES   59 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes   59 (286)
                      .+..-.+.++..+..++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~  180 (895)
T PRK01156        163 SLERNYDKLKDVIDMLRA  180 (895)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333334444444444444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.51  E-value=1.1  Score=46.71  Aligned_cols=115  Identities=21%  Similarity=0.356  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHH
Q 023185           50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE---TLNAAEQVDKAHARADELEKQID  126 (286)
Q Consensus        50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl---~~~~~eqi~ka~~Ri~eLek~Ie  126 (286)
                      ++.....++..+..++.++..+..+.......+.+++..|..|.+++......-   .....+.  ..+.++..|.+.++
T Consensus        20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~--~Lq~E~~~L~kElE   97 (617)
T PF15070_consen   20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQ--QLQAEAEHLRKELE   97 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHH--HHHHHHHHHHHHHH
Confidence            344445555666666666666666666666666666666666665554332111   0111111  12245555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI  166 (286)
Q Consensus       127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~  166 (286)
                      .|..++..+......|-....+.+.++.+++..+..++..
T Consensus        98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~  137 (617)
T PF15070_consen   98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQ  137 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555544444333333333344444444444333333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.48  E-value=1.8  Score=38.77  Aligned_cols=101  Identities=26%  Similarity=0.345  Sum_probs=59.1

Q ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET-L-NAAEQVDKAHARADELEKQIDNLKKE  131 (286)
Q Consensus        54 i~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~-~-~~~eqi~ka~~Ri~eLek~Ie~Lk~e  131 (286)
                      |..|..++.++.......+..+.+...+...+..-+..++.++..+++.+. + .....+..+..|+..+++.+..|+-+
T Consensus        29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e  108 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE  108 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444555555555555555555555555555555441 1 12233445567888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 023185          132 SEKQQKEKEALEARAIEAEKKIS  154 (286)
Q Consensus       132 ie~~~~kk~eLEa~~~e~e~k~~  154 (286)
                      -+....+-..++..+.++..+..
T Consensus       109 ~evL~qr~~kle~ErdeL~~kf~  131 (201)
T PF13851_consen  109 HEVLEQRFEKLEQERDELYRKFE  131 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777777777777777655443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.45  E-value=2.9  Score=41.16  Aligned_cols=55  Identities=18%  Similarity=0.270  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      -++........+.+++-+....++...-.+-...+.+......++.+.+.++..+
T Consensus        88 tel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~  142 (499)
T COG4372          88 TELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARL  142 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=95.44  E-value=2.5  Score=48.77  Aligned_cols=57  Identities=21%  Similarity=0.263  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      ++.+.+-.-.++.++...++.+..++--++..+.++...++....++..|+.+.+.-
T Consensus      1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~w 1290 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRW 1290 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555555555555555555555444

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=95.43  E-value=3.6  Score=41.96  Aligned_cols=43  Identities=26%  Similarity=0.352  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       149 ~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      +..........+..+.......+..+..++..+..+..++...
T Consensus       384 Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaa  426 (522)
T PF05701_consen  384 AKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAA  426 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444455555555555555555555543

Several sequences in this family are described as being myosin heavy chain-like.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.13  E-value=3.3  Score=39.77  Aligned_cols=25  Identities=20%  Similarity=0.449  Sum_probs=16.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHH
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDE   63 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e   63 (286)
                      +...+..++..++.++..++.....
T Consensus        75 d~~~~~~~l~~l~~~~~~l~a~~~~   99 (423)
T TIGR01843        75 DATDVEADAAELESQVLRLEAEVAR   99 (423)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHH
Confidence            4455667777777777766655544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.12  E-value=5.4  Score=42.30  Aligned_cols=160  Identities=21%  Similarity=0.297  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHH---HH----------
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE---TLN---AA----------  108 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl---~~~---~~----------  108 (286)
                      .++..+++++.+.+.++..+...+......++..+..+.+....|..|-..++.+..--   +..   ..          
T Consensus       265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~  344 (717)
T PF09730_consen  265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDG  344 (717)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccccccccccc
Confidence            57788999999999999999999999999999999999999999999999998886510   000   00          


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          109 ---------EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA----EKKISDLSAKLEKLQKINDEQKSKIR  175 (286)
Q Consensus       109 ---------eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~----e~k~~el~~k~~~Lek~~~Eqk~~i~  175 (286)
                               -++++  .+.+....++..++.++..++.+...++.+....    ...+..+..++..+++...+-+..+.
T Consensus       345 ~~ye~Di~~~eiLe--~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~  422 (717)
T PF09730_consen  345 DYYEVDINGLEILE--CKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERIS  422 (717)
T ss_pred             chhhhccccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence                     01222  4555555578888888888877777666655444    44567777778888886666666777


Q ss_pred             HHHHHHHHHHHHHHH-------HHHHhhhhhHHH-hhhh
Q 023185          176 KTERALKVAEEEMMR-------AKFEATSRSKEL-TEVH  206 (286)
Q Consensus       176 ~lE~~lq~~Eeei~k-------le~Ea~~~a~ql-~~~~  206 (286)
                      .++.++..+-.....       ++-+....+..| +-||
T Consensus       423 ~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYH  461 (717)
T PF09730_consen  423 ELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYH  461 (717)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776665554444       444444555555 3355

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.93  E-value=3.6  Score=39.29  Aligned_cols=64  Identities=20%  Similarity=0.278  Sum_probs=35.2

Q ss_pred             CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK----EKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~----e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      ...-..+++.++.|+..|+.+-..+-.+...+..+....    +..+.+--.++.....+|..+..++
T Consensus       155 ~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseEL  222 (306)
T PF04849_consen  155 SSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEEL  222 (306)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence            344456677777777777766655555555555333322    3334444555555555555555433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=94.72  E-value=9.1  Score=42.89  Aligned_cols=61  Identities=13%  Similarity=0.285  Sum_probs=30.2

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      +...+........+++..+...+..+......+..++..+.....++..+.++-..++.+.
T Consensus       612 ~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  672 (1201)
T PF12128_consen  612 AEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEI  672 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3444444444455555555555555555555555555555555555555555544444433

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.70  E-value=4  Score=42.50  Aligned_cols=42  Identities=29%  Similarity=0.354  Sum_probs=18.2

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 023185           59 SHIDEKTQELKGKDEVVAQKEKAIQDK--SERIVSLQKELSSLQ  100 (286)
Q Consensus        59 s~i~e~~~eL~~~d~~I~q~e~~i~e~--~~eI~~Lq~eI~~~q  100 (286)
                      +.+.....++..+..+|+.+...|...  ...|..+..++..++
T Consensus       391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~  434 (650)
T TIGR03185       391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQ  434 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence            344444444444444444444444332  234444444444443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=94.66  E-value=3.1  Score=37.17  Aligned_cols=138  Identities=19%  Similarity=0.315  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEV-------VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA  116 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~-------I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~  116 (286)
                      .-++.+++..+.++...++++..+-+.+..-       |+..+..=+++..-|+.-.++|..++..+        -+++.
T Consensus        11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L--------R~~q~   82 (194)
T PF15619_consen   11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERL--------RKSQE   82 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence            3466777777777777777777666555433       44444444666666777777777776333        33334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          117 RADELEKQIDNLKKESEKQQKEKEALEARAI--EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR  190 (286)
Q Consensus       117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~--e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k  190 (286)
                      +.+++++.+.+...++...+.....|.....  .+. ...++..++..++....+....+..+++.+........+
T Consensus        83 ~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~-eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r  157 (194)
T PF15619_consen   83 QERELERKLKDKDEELLKTKDELKHLKKLSEDKNLA-EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR  157 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            4444444444444444443333322222111  011 124555566666666666666666666655444444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.63  E-value=1.2  Score=42.50  Aligned_cols=65  Identities=22%  Similarity=0.205  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      .++.+.+.+..+...++.....+.......-.....++-...+.....+.+..........++++
T Consensus        68 ~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L  132 (314)
T PF04111_consen   68 ELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL  132 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333344444444444444444555545555555544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=94.52  E-value=2.3  Score=35.18  Aligned_cols=27  Identities=11%  Similarity=0.164  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           72 DEVVAQKEKAIQDKSERIVSLQKELSS   98 (286)
Q Consensus        72 d~~I~q~e~~i~e~~~eI~~Lq~eI~~   98 (286)
                      +.++..++.++..+..+-+.+..+|-.
T Consensus        29 E~E~~~l~~el~~l~~~r~~l~~Eiv~   55 (120)
T PF12325_consen   29 EGELASLQEELARLEAERDELREEIVK   55 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333344444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.45  E-value=3.5  Score=36.88  Aligned_cols=48  Identities=19%  Similarity=0.258  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM  188 (286)
Q Consensus       141 eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei  188 (286)
                      ..+.-....+..+.+.+.....+...+.++..-...+...+..+++.+
T Consensus       141 ~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  141 EFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444445555555555555555555555554444444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.44  E-value=7.4  Score=40.66  Aligned_cols=97  Identities=19%  Similarity=0.351  Sum_probs=59.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhhh
Q 023185           41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ----------------DKSERIVSLQKELSSLQKKET  104 (286)
Q Consensus        41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~----------------e~~~eI~~Lq~eI~~~qkkl~  104 (286)
                      ..+++.+.++..++..|...++.....+.+++..|.++...+.                .++.++..|..+++.+..++.
T Consensus        25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq  104 (617)
T PF15070_consen   25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ  104 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457777888888888888888888888888888877776554                345555666666666654440


Q ss_pred             H--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          105 L--NAAE----QVDKAHARADELEKQIDNLKKESEKQQK  137 (286)
Q Consensus       105 ~--~~~e----qi~ka~~Ri~eLek~Ie~Lk~eie~~~~  137 (286)
                      -  ...+    ....-..|+.+|++.+..+.....+...
T Consensus       105 aqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~k  143 (617)
T PF15070_consen  105 AQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQK  143 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0  0001    1112235666677666666655554433

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=94.44  E-value=0.67  Score=35.05  Aligned_cols=68  Identities=38%  Similarity=0.470  Sum_probs=41.0

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE  143 (286)
Q Consensus        64 ~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLE  143 (286)
                      +...|.++|..|.++..+-..++.+...+.+-|..+.               +.+.++++.+..++..++....+...|+
T Consensus         3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr---------------~~~~e~e~~~~~l~~~~~~~e~~~~~l~   67 (74)
T PF12329_consen    3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLR---------------AKIKELEKQIKELKKKLEELEKELESLE   67 (74)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567777777777777777777666666665554               3444555555555555555555555555


Q ss_pred             HHH
Q 023185          144 ARA  146 (286)
Q Consensus       144 a~~  146 (286)
                      .++
T Consensus        68 ~~l   70 (74)
T PF12329_consen   68 ERL   70 (74)
T ss_pred             HHh
Confidence            443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=94.40  E-value=7  Score=40.18  Aligned_cols=139  Identities=21%  Similarity=0.286  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023185          121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK  200 (286)
Q Consensus       121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~  200 (286)
                      +.++|..+.+....+......-..-...+...+.+....+..+++...+....++.+..+...+...+.++.......-+
T Consensus       349 l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR  428 (560)
T PF06160_consen  349 LEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR  428 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555544444444445556677778888888888888888888889999989999999888888887777


Q ss_pred             HHhhhhccCCchhHHHHHHHHHHHHhhhhhhhC-cch-hHHHHHHHHHhHHhhhhhchhhHHhhhhhhc
Q 023185          201 ELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHG-KPA-MDVAIQKALEKKAQAGKWVQPHVETIKAVSS  267 (286)
Q Consensus       201 ql~~~~g~~l~Pwla~~~~~~~~~~~~~w~~hg-~p~-~~~~~~~~~~~~~~~~~~~~ph~~~~~~~~~  267 (286)
                      .+.+.+---+|.-.-..+..........-..-+ .|+ |+.+.+ -+..       +...|+++..++.
T Consensus       429 ~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~-~l~~-------a~~~v~~L~~~t~  489 (560)
T PF06160_consen  429 RLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNK-QLEE-------AEDDVETLEEKTE  489 (560)
T ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH-HHHH-------HHHHHHHHHHHHH
Confidence            776666323444333333333333333333333 333 222222 2222       4556777666653

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.25  E-value=5.5  Score=43.73  Aligned_cols=29  Identities=14%  Similarity=0.245  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185          169 EQKSKIRKTERALKVAEEEMMRAKFEATS  197 (286)
Q Consensus       169 Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~  197 (286)
                      .....+..+.+.+..++..+.+...+-..
T Consensus       867 ~~~~~~tkl~~~i~~~es~ie~~~~er~~  895 (1141)
T KOG0018|consen  867 RLVKELTKLDKEITSIESKIERKESERHN  895 (1141)
T ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence            33344444444555555555554444433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.24  E-value=3.9  Score=36.58  Aligned_cols=125  Identities=26%  Similarity=0.294  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK  129 (286)
Q Consensus        50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk  129 (286)
                      +-..|..|+..-..+..+-..+...|...+.--..+..+|..|...+.++|.-+            ...+.++..+++|+
T Consensus         6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal------------~~aK~l~eEledLk   73 (193)
T PF14662_consen    6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL------------QKAKALEEELEDLK   73 (193)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence            334444444444444444455555555555555556666666666666665332            23444555566666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE  186 (286)
Q Consensus       130 ~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Ee  186 (286)
                      .....++.....|-+..+.+++...-+...+..++..........+.+.++...+..
T Consensus        74 ~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~  130 (193)
T PF14662_consen   74 TLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT  130 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence            666666666666666666666666666666666666655555555555555444433

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.19  E-value=8.8  Score=40.52  Aligned_cols=21  Identities=5%  Similarity=0.014  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 023185          171 KSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       171 k~~i~~lE~~lq~~Eeei~kl  191 (286)
                      ...+..++++.+..+..+..+
T Consensus       375 ~~e~~~L~Re~~~~~~~Y~~l  395 (754)
T TIGR01005       375 QVDLDALQRDAAAKRQLYESY  395 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455556666655555555553

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.11  E-value=8  Score=39.77  Aligned_cols=79  Identities=27%  Similarity=0.321  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE  194 (286)
Q Consensus       116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~E  194 (286)
                      +....++..|..|+.+++..+.+....+..+......+..+...+..++....--+..+..++.++..+..+..++..+
T Consensus       106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~  184 (546)
T KOG0977|consen  106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREE  184 (546)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3333444455555555555555444444444444444444444444444444444444444444444444444443333

>PRK11281 hypothetical protein; Provisional

Probab=94.08  E-value=6.4  Score=43.83  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          160 LEKLQKINDEQKSKIRKTERALKVAEEEMMR  190 (286)
Q Consensus       160 ~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k  190 (286)
                      .+=.+...+.....++.++..++.+++.+..
T Consensus       222 ~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~  252 (1113)
T PRK11281        222 QDLLQKQRDYLTARIQRLEHQLQLLQEAINS  252 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444455555555555555555554

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.00  E-value=11  Score=40.81  Aligned_cols=34  Identities=15%  Similarity=0.210  Sum_probs=23.6

Q ss_pred             hhhhhhCcc-hhHHHHHHHHHhHHhhhh-hchhhHH
Q 023185          227 THWNAHGKP-AMDVAIQKALEKKAQAGK-WVQPHVE  260 (286)
Q Consensus       227 ~~w~~hg~p-~~~~~~~~~~~~~~~~~~-~~~ph~~  260 (286)
                      -||+--|-| .+-+....+|....+... |..|-+.
T Consensus       612 ~~~~~~~~p~~Llst~~~~s~n~~~~e~~~~~yla~  647 (980)
T KOG0980|consen  612 LHWRCLTSPDFLLSTAENASVNATQFETSFNNYLAD  647 (980)
T ss_pred             cccCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            345444444 667788889999888887 7776544

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.91  E-value=9.8  Score=41.63  Aligned_cols=60  Identities=28%  Similarity=0.431  Sum_probs=37.2

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      +=.+|-+++..-.+|+...+.-...|..+...++.+.+..+..... ....+.|+.+.++.
T Consensus       179 ~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer-~~~~~~Ie~l~~k~  238 (1072)
T KOG0979|consen  179 YHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER-ERKKSKIELLEKKK  238 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence            4456677777777777777666666666666666666666554433 33456666664443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.79  E-value=8  Score=38.59  Aligned_cols=59  Identities=8%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQEL--------KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK  101 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL--------~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk  101 (286)
                      ++.++.+++.++.+.+..+.....+-        ......|...+..+...+.++..++..++.++.
T Consensus       166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~  232 (498)
T TIGR03007       166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKR  232 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666666655543211        123344555555555555555555555555544

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.74  E-value=11  Score=40.28  Aligned_cols=163  Identities=20%  Similarity=0.265  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK  123 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek  123 (286)
                      ......+..++..+++.+..+.-.+......+......+.+.+..|..|+.++...++.                     
T Consensus       588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS---------------------  646 (769)
T PF05911_consen  588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKES---------------------  646 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            34444555555555555555544444444555555555555555555555555444321                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-
Q 023185          124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL-  202 (286)
Q Consensus       124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql-  202 (286)
                       =..+..++.........++.+...++.....+..++..|+.....-+..-..+...-..++.++.+...+.......- 
T Consensus       647 -~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~  725 (769)
T PF05911_consen  647 -NSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANE  725 (769)
T ss_pred             -HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcccc
Confidence             122223333444444555666666666666666666666666666555555555555566666666543322110000 


Q ss_pred             -hhhhccCCchhHHHHHHHHHHHHhhh
Q 023185          203 -TEVHSAWLPPWLAVHLLQCQSLIETH  228 (286)
Q Consensus       203 -~~~~g~~l~Pwla~~~~~~~~~~~~~  228 (286)
                       .+....|=.--.|...+-||++..++
T Consensus       726 ~~k~kqe~EiaaAA~KLAECQeTI~sL  752 (769)
T PF05911_consen  726 DKKIKQEKEIAAAAEKLAECQETIASL  752 (769)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence             00111122223556677777776654

The function of this family is unknown.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.73  E-value=8.1  Score=38.52  Aligned_cols=20  Identities=10%  Similarity=0.293  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 023185          171 KSKIRKTERALKVAEEEMMR  190 (286)
Q Consensus       171 k~~i~~lE~~lq~~Eeei~k  190 (286)
                      ...+..++++.+..+..+..
T Consensus       354 ~~el~~L~Re~~~~~~~Y~~  373 (498)
T TIGR03007       354 EAELTQLNRDYEVNKSNYEQ  373 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555444444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.73  E-value=7.1  Score=41.21  Aligned_cols=44  Identities=9%  Similarity=0.065  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       148 e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      .+...++.++.....+-....++.....+.+...+..+.-+.++
T Consensus       356 ~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~  399 (754)
T TIGR01005       356 QLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNY  399 (754)
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444445544445554444444444443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.72  E-value=8.1  Score=41.40  Aligned_cols=55  Identities=18%  Similarity=0.317  Sum_probs=31.5

Q ss_pred             CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK   94 (286)
Q Consensus        40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~   94 (286)
                      ...+..+++.++.....++.......+++......+.+.+..|.+++.++..+..
T Consensus       591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke  645 (769)
T PF05911_consen  591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE  645 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666655555555555555555555555555555554443

The function of this family is unknown.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.66  E-value=13  Score=40.69  Aligned_cols=73  Identities=23%  Similarity=0.327  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185          124 QIDNLKKESEKQQKEKEALEARAIEA-------EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT  196 (286)
Q Consensus       124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~-------e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~  196 (286)
                      .++.++.++.+...+..+|+...++.       .....++...++.+.....+.|..-.++...+..++..+.+.+....
T Consensus       419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~  498 (1200)
T KOG0964|consen  419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLR  498 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444333332       33444455666666677777777777777766666666666554444

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.64  E-value=5  Score=38.34  Aligned_cols=135  Identities=20%  Similarity=0.280  Sum_probs=67.9

Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023185           36 DAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEV----VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQV  111 (286)
Q Consensus        36 ~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~----I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi  111 (286)
                      ......+++.++..+...=..|.++...+..+-...+++    |..+-+.+.+...+|..|..+|..-...        .
T Consensus       158 ~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee--------~  229 (306)
T PF04849_consen  158 KCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEE--------N  229 (306)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH--------H
Confidence            345667778888777777766766666665444443333    3334456666666666666666555311        1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE  178 (286)
Q Consensus       112 ~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE  178 (286)
                      ..-+..|..|-.+|.+++......-.+.++|.............+...+.++++...+--..+.+..
T Consensus       230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ  296 (306)
T PF04849_consen  230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ  296 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112233334444444444444444444444444444444444444444444444444444443333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=93.59  E-value=5.6  Score=36.16  Aligned_cols=130  Identities=18%  Similarity=0.265  Sum_probs=72.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHAR  117 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~~~~~eqi~ka~~R  117 (286)
                      +...+++.+.+....+..++......+..+.........+...|.+....+..+...+......+ +.-........+.+
T Consensus        79 s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae  158 (240)
T PF12795_consen   79 SLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAE  158 (240)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHH
Confidence            55566677777777777777777776666666666666666666666666666666655432111 11112222222344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND  168 (286)
Q Consensus       118 i~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~  168 (286)
                      ..-+...+..+..++.......+-+..++.....++..+...+..|+....
T Consensus       159 ~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln  209 (240)
T PF12795_consen  159 LAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN  209 (240)
T ss_pred             HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555555555555555544443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.58  E-value=9.5  Score=39.29  Aligned_cols=14  Identities=14%  Similarity=0.095  Sum_probs=7.5

Q ss_pred             chhhHHhhhhhhcc
Q 023185          255 VQPHVETIKAVSSF  268 (286)
Q Consensus       255 ~~ph~~~~~~~~~~  268 (286)
                      .+-|+.+....+.=
T Consensus       444 Lq~~~~~~~~~i~E  457 (581)
T KOG0995|consen  444 LQEHFSNKASTIEE  457 (581)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34566666555443

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=93.32  E-value=0.81  Score=33.00  Aligned_cols=46  Identities=20%  Similarity=0.324  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023185           74 VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE  120 (286)
Q Consensus        74 ~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~e  120 (286)
                      +|+++...+..+..+|+.|.++|+.++... ..+..+...|+.||+.
T Consensus         4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v-~~ak~EAaRAN~RlDN   49 (56)
T PF04728_consen    4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV-QAAKEEAARANQRLDN   49 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            344444444455555555555555554444 4445666677777764

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.13  E-value=3.4  Score=39.44  Aligned_cols=68  Identities=25%  Similarity=0.326  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK  192 (286)
Q Consensus       125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle  192 (286)
                      +..++.+.+....+...|+....++...+..++.....+.....+.+.....+...+-..+++...+.
T Consensus        52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~  119 (314)
T PF04111_consen   52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK  119 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333344444444444444444444444444444444444444444444444443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.12  E-value=2.8  Score=37.81  Aligned_cols=48  Identities=15%  Similarity=0.279  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       144 a~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      .+..++..++...+.....|+....+.+.++..+......++.+.+.+
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~  165 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK  165 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444444444444444444444444444444443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.01  E-value=2.9  Score=37.70  Aligned_cols=21  Identities=10%  Similarity=0.449  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEK   64 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~   64 (286)
                      ...+..++.++.+++.+.+++
T Consensus        92 ~~rlp~le~el~~l~~~l~~~  112 (206)
T PRK10884         92 RTRVPDLENQVKTLTDKLNNI  112 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=92.83  E-value=5.4  Score=33.90  Aligned_cols=63  Identities=19%  Similarity=0.375  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE  178 (286)
Q Consensus       116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE  178 (286)
                      +-+..|+.+|..+-..+.........+-.....+.......+.++..|+.........|...+
T Consensus        52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E  114 (140)
T PF10473_consen   52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE  114 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            333334444444333333333333333333333333333333333333333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=92.80  E-value=24  Score=41.21  Aligned_cols=51  Identities=14%  Similarity=0.186  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      ++.........+.++...+..+...+.-++..+..+..+|.....++..++
T Consensus      1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~ 1284 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLE 1284 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=92.76  E-value=17  Score=39.38  Aligned_cols=17  Identities=18%  Similarity=0.519  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 023185          119 DELEKQIDNLKKESEKQ  135 (286)
Q Consensus       119 ~eLek~Ie~Lk~eie~~  135 (286)
                      ..|...|+.+.++....
T Consensus       469 ~~L~d~le~~~~~~~~~  485 (980)
T KOG0980|consen  469 TNLNDQLEELQRAAGRA  485 (980)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.59  E-value=5.2  Score=33.10  Aligned_cols=48  Identities=29%  Similarity=0.389  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      +-++.+.+.|..+++++..       +...+..++..-.....+|..+-.+.+.+
T Consensus        16 ~~ve~L~s~lr~~E~E~~~-------l~~el~~l~~~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELAS-------LQEELARLEAERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555533       33344444444444445555555554444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.54  E-value=14  Score=38.03  Aligned_cols=41  Identities=24%  Similarity=0.305  Sum_probs=20.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        63 e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      .+...-...+..+..+..+|..++.+|..++.+++++++.+
T Consensus       284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444445555555555555555555555554443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.52  E-value=5.4  Score=33.10  Aligned_cols=19  Identities=21%  Similarity=0.282  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 023185          162 KLQKINDEQKSKIRKTERA  180 (286)
Q Consensus       162 ~Lek~~~Eqk~~i~~lE~~  180 (286)
                      .+++.+.+.+..++.+...
T Consensus       102 ~le~e~~~~~~r~~dL~~Q  120 (132)
T PF07926_consen  102 QLEKELSELEQRIEDLNEQ  120 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=92.37  E-value=22  Score=39.81  Aligned_cols=38  Identities=26%  Similarity=0.337  Sum_probs=23.8

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        66 ~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      .+++..++.+.+.+..++.++..+.+++.++..+++++
T Consensus       494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~  531 (1317)
T KOG0612|consen  494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKN  531 (1317)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556666666666666666666666666665555

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=92.27  E-value=17  Score=38.41  Aligned_cols=60  Identities=22%  Similarity=0.263  Sum_probs=30.9

Q ss_pred             CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 023185           40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK--EKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~--e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      .+.+-+.+..+..|+..+-.+-+.+..+++++..++...  ..++.++...|+.|+.+=..+
T Consensus       404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkL  465 (961)
T KOG4673|consen  404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKL  465 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            344456666666666666666555555555444444332  123444555555555544444

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.21  E-value=9.1  Score=35.00  Aligned_cols=15  Identities=27%  Similarity=0.430  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHhhH
Q 023185           47 LDQLKSKIRSLESHI   61 (286)
Q Consensus        47 l~elk~ki~eLes~i   61 (286)
                      +..++..+..+....
T Consensus        22 L~~~~~~l~~~~~~~   36 (302)
T PF10186_consen   22 LLELRSELQQLKEEN   36 (302)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=92.17  E-value=8.9  Score=34.82  Aligned_cols=58  Identities=22%  Similarity=0.334  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHhhh--hccCCchhH
Q 023185          157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT-SRSKELTEV--HSAWLPPWL  214 (286)
Q Consensus       157 ~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~-~~a~ql~~~--~g~~l~Pwl  214 (286)
                      +...+=+....+.....++.++..+..++..+........ ....+....  ..+..||-+
T Consensus       177 ~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~~~a~~~~~~~~~~~pli  237 (240)
T PF12795_consen  177 NNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQAVEEAEQLQEESADLPPLI  237 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCChHh
Confidence            3333334444455556666666666666666665333322 222222111  156777754

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=92.10  E-value=16  Score=37.62  Aligned_cols=83  Identities=25%  Similarity=0.312  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 023185           46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI  125 (286)
Q Consensus        46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~I  125 (286)
                      -+++.......++..+..+..+++.+......+++....-..++.....-+..++.++      ...+  .|++.++..+
T Consensus       100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~------~~~k--rr~~~le~e~  171 (546)
T KOG0977|consen  100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI------NTLK--RRIKALEDEL  171 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH------HHHH--HHHHHHHHHH
Confidence            3333434444444444444444444444444443333333344443333333333222      2222  4555555544


Q ss_pred             HHHHHHHHHHH
Q 023185          126 DNLKKESEKQQ  136 (286)
Q Consensus       126 e~Lk~eie~~~  136 (286)
                      ..|+.+...+.
T Consensus       172 ~~Lk~en~rl~  182 (546)
T KOG0977|consen  172 KRLKAENSRLR  182 (546)
T ss_pred             HHHHHHhhhhH
Confidence            44444444443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=91.99  E-value=25  Score=39.50  Aligned_cols=46  Identities=22%  Similarity=0.266  Sum_probs=22.0

Q ss_pred             HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        58 es~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      -+.+....+.|...++.....|........++..|...++.++.+.
T Consensus      1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444455555555555555555555554433

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.71  E-value=15  Score=36.48  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=17.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHH
Q 023185           42 PLKIELDQLKSKIRSLESHIDEK   64 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~   64 (286)
                      .++.++..++.++..|+..++.+
T Consensus       101 ~~~~~~~~~~~~~~rL~a~~~~~  123 (457)
T TIGR01000       101 LLEQQLDNLKDQKKSLDTLKQSI  123 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            37888888888888887766543

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=91.70  E-value=0.43  Score=45.84  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          155 DLSAKLEKLQKINDEQKSKIRKTERAL  181 (286)
Q Consensus       155 el~~k~~~Lek~~~Eqk~~i~~lE~~l  181 (286)
                      .+...+..|+..+..+.-.|..+++.+
T Consensus       123 ~lsTdvsNLksdVSt~aL~ItdLe~RV  149 (326)
T PF04582_consen  123 ALSTDVSNLKSDVSTQALNITDLESRV  149 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhcchHhhHHHHH
Confidence            333333333344444444444444333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.66  E-value=23  Score=38.61  Aligned_cols=13  Identities=15%  Similarity=0.371  Sum_probs=7.5

Q ss_pred             hhhhhhhCcchhH
Q 023185          226 ETHWNAHGKPAMD  238 (286)
Q Consensus       226 ~~~w~~hg~p~~~  238 (286)
                      ++--..||.|-++
T Consensus       550 Sseees~q~~s~~  562 (1243)
T KOG0971|consen  550 SSEEESQQPPSVD  562 (1243)
T ss_pred             hhHHHhcCCCCCc
Confidence            4445567777444

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=91.56  E-value=11  Score=34.66  Aligned_cols=169  Identities=18%  Similarity=0.243  Sum_probs=79.6

Q ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE  133 (286)
Q Consensus        54 i~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie  133 (286)
                      +..+..........+......++..++.+..+..++..|+.+...+-..+ ............|..+|...|..+...+.
T Consensus        26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~-~~l~~~t~~t~~~a~~L~~~i~~l~~~i~  104 (264)
T PF06008_consen   26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKA-QQLNNNTERTLQRAQDLEQFIQNLQDNIQ  104 (264)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333344444444444444444444444444443322 22224444445677777777777777777


Q ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhcc
Q 023185          134 KQQKEKEALEA-----RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA  208 (286)
Q Consensus       134 ~~~~kk~eLEa-----~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~~~~g~  208 (286)
                      .+..+...+-.     .-.++...+.+....+..|.+..  -.......+..+..++.-+.+....-......... --.
T Consensus       105 ~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~-l~~  181 (264)
T PF06008_consen  105 ELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENES-LAE  181 (264)
T ss_pred             HHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHH-HHH
Confidence            77555544433     33344445555555555554442  34444444555555555555443332211111100 012


Q ss_pred             CCchhHHHHHHHHHHHHh
Q 023185          209 WLPPWLAVHLLQCQSLIE  226 (286)
Q Consensus       209 ~l~Pwla~~~~~~~~~~~  226 (286)
                      -+|.+|..|...++..-.
T Consensus       182 ~i~~~L~~~~~kL~Dl~~  199 (264)
T PF06008_consen  182 AIRDDLNDYNAKLQDLRD  199 (264)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            355566666666665443

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=91.46  E-value=23  Score=38.19  Aligned_cols=44  Identities=18%  Similarity=0.243  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ  164 (286)
Q Consensus       121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Le  164 (286)
                      +..++.+++-.+-+.+.+.+.+..++++++++...+..-+..++
T Consensus       328 ltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~  371 (1265)
T KOG0976|consen  328 LTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQ  371 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHH
Confidence            33344444444444444444444444444444433333333333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=91.45  E-value=11  Score=34.61  Aligned_cols=118  Identities=20%  Similarity=0.380  Sum_probs=54.4

Q ss_pred             HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQK  137 (286)
Q Consensus        58 es~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~  137 (286)
                      +....++...|....++....+..+......+..|..+....+.        .......+..+++..+..|..+......
T Consensus         4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aee--------ea~~Le~k~~eaee~~~rL~~~~~~~~e   75 (246)
T PF00769_consen    4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEE--------EAEELEQKRQEAEEEKQRLEEEAEMQEE   75 (246)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555666666666666666666666666666555541        1111113444444455555555444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          138 EKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR  190 (286)
Q Consensus       138 kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k  190 (286)
                      .+..|+.       .+.++...+..|...+......-..+...+..+.....+
T Consensus        76 Ek~~Le~-------e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~  121 (246)
T PF00769_consen   76 EKEQLEQ-------ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE  121 (246)
T ss_dssp             -----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444       444444555555555555555555555554444444333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=91.43  E-value=17  Score=36.55  Aligned_cols=47  Identities=19%  Similarity=0.204  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHhhHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           49 QLKSKIRSLESHIDEKTQ-ELKGKDEVVAQKEKAIQDKSERIVSLQKE   95 (286)
Q Consensus        49 elk~ki~eLes~i~e~~~-eL~~~d~~I~q~e~~i~e~~~eI~~Lq~e   95 (286)
                      ++.++..-.++.+.++++ +|.....+...+-++...++.+...+++.
T Consensus       329 qleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~  376 (493)
T KOG0804|consen  329 QLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAE  376 (493)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            444444444555555555 44444444444444444444443333333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.23  E-value=7.6  Score=32.18  Aligned_cols=14  Identities=29%  Similarity=0.548  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHHH
Q 023185          147 IEAEKKISDLSAKL  160 (286)
Q Consensus       147 ~e~e~k~~el~~k~  160 (286)
                      ..++..+.++...+
T Consensus       101 ~~le~e~~~~~~r~  114 (132)
T PF07926_consen  101 EQLEKELSELEQRI  114 (132)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.15  E-value=28  Score=38.52  Aligned_cols=39  Identities=15%  Similarity=0.187  Sum_probs=15.4

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS   97 (286)
Q Consensus        59 s~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~   97 (286)
                      +++..+...|.....++.+....+.....++..++++|+
T Consensus       683 ~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~  721 (1141)
T KOG0018|consen  683 SKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID  721 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444333333333333333333333333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.09  E-value=28  Score=38.35  Aligned_cols=193  Identities=18%  Similarity=0.200  Sum_probs=100.6

Q ss_pred             CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023185           40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD  119 (286)
Q Consensus        40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~  119 (286)
                      +..+...+++....+..+..++.+++..|..+..+..+++..-..+..+-..|+-+|.++|..+....+. ...+-.-+.
T Consensus       253 s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~-r~~~l~~l~  331 (1200)
T KOG0964|consen  253 SEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQ-RNLALHVLQ  331 (1200)
T ss_pred             hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhh-hhhHHHHHH
Confidence            3445566666666666667777777666666666666666665555555555555555555444111110 000011222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHH
Q 023185          120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK--------------------LQKINDEQKSKIRKTER  179 (286)
Q Consensus       120 eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~--------------------Lek~~~Eqk~~i~~lE~  179 (286)
                      .++..|...+.++..+.-+-..|.........++..+.+....                    +.........-|+.+..
T Consensus       332 ~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke  411 (1200)
T KOG0964|consen  332 KVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKE  411 (1200)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            2333444555555554444444444444444444444443222                    22334455566666666


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhhhh------ccC------CchhHHHHHHHHHHHHhhhhhhhC
Q 023185          180 ALKVAEEEMMRAKFEATSRSKELTEVH------SAW------LPPWLAVHLLQCQSLIETHWNAHG  233 (286)
Q Consensus       180 ~lq~~Eeei~kle~Ea~~~a~ql~~~~------g~~------l~Pwla~~~~~~~~~~~~~w~~hg  233 (286)
                      ....++.++..+..+..++..++.+..      +.-      ...-+--.++-++..-...|.+-.
T Consensus       412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~  477 (1200)
T KOG0964|consen  412 QENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEK  477 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777777776666553222      111      122244556666777778888743

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=91.09  E-value=9.6  Score=33.07  Aligned_cols=133  Identities=16%  Similarity=0.256  Sum_probs=66.3

Q ss_pred             HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHH
Q 023185           51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE--------------TLNAAEQVDKAHA  116 (286)
Q Consensus        51 k~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl--------------~~~~~eqi~ka~~  116 (286)
                      +.-|..+++.+.++..=-.....+...+.+++.++..++..+-.+++.++..-              ....+.++-.|..
T Consensus         5 ~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe   84 (159)
T PF05384_consen    5 KKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYE   84 (159)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHH
Confidence            34455555555555555555566666666666666666666666666665322              0001222222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR  190 (286)
Q Consensus       117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k  190 (286)
                      .       ...++-.+--.+.+...|..++.+++.++..+...++..+....+-...+.=+..++..+-..+..
T Consensus        85 ~-------A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~  151 (159)
T PF05384_consen   85 E-------AHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED  151 (159)
T ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3       333333444444444445555555555555555555555555555555555555555544444443

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.02  E-value=14  Score=39.32  Aligned_cols=16  Identities=25%  Similarity=0.140  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHhh
Q 023185          181 LKVAEEEMMRAKFEAT  196 (286)
Q Consensus       181 lq~~Eeei~kle~Ea~  196 (286)
                      +...-++|.++..+.+
T Consensus       694 L~~~~~~I~~~v~~ik  709 (717)
T PF10168_consen  694 LKQQGEEIDELVKQIK  709 (717)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333444333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=90.83  E-value=11  Score=33.46  Aligned_cols=54  Identities=9%  Similarity=0.150  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      +++-+.+++..+..++..+..+       -..-..++..+......+...+......-..+
T Consensus        28 l~q~ird~e~~l~~a~~~~a~~-------~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g   81 (221)
T PF04012_consen   28 LEQAIRDMEEQLRKARQALARV-------MANQKRLERKLDEAEEEAEKWEKQAELALAAG   81 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4445555555555554444444       44444444444444455555555544443333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=90.78  E-value=21  Score=36.48  Aligned_cols=68  Identities=26%  Similarity=0.306  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      .+..|-.+|.++++.+..+.-+++++............++......+++.       ..+....+..+++++..+
T Consensus       234 e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk-------yAE~m~~~~EaeeELk~l  301 (596)
T KOG4360|consen  234 ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK-------YAECMQMLHEAEEELKCL  301 (596)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence            34445556666666666666666666666555555555555555444444       444444444555555544

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.77  E-value=12  Score=33.51  Aligned_cols=45  Identities=22%  Similarity=0.302  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 023185           46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV   90 (286)
Q Consensus        46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~   90 (286)
                      ++.+++.+....+..+.++..+.+.+.+-+..++.+..++..++.
T Consensus        35 ei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~   79 (201)
T PF13851_consen   35 EIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK   79 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444433333333333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.70  E-value=29  Score=37.94  Aligned_cols=10  Identities=20%  Similarity=0.537  Sum_probs=4.2

Q ss_pred             HHHHHHHHHH
Q 023185          111 VDKAHARADE  120 (286)
Q Consensus       111 i~ka~~Ri~e  120 (286)
                      +..-+.|+++
T Consensus       373 lEqqN~rLKd  382 (1243)
T KOG0971|consen  373 LEQQNARLKD  382 (1243)
T ss_pred             HHHHHHHHHH
Confidence            3333444444

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=90.33  E-value=11  Score=36.84  Aligned_cols=44  Identities=14%  Similarity=0.260  Sum_probs=19.5

Q ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        56 eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      +..+.++.+.+-.......+......+..+..+|.....+|.+-
T Consensus       217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sR  260 (359)
T PF10498_consen  217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESR  260 (359)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=90.29  E-value=38  Score=38.64  Aligned_cols=20  Identities=20%  Similarity=0.351  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHH
Q 023185           46 ELDQLKSKIRSLESHIDEKT   65 (286)
Q Consensus        46 el~elk~ki~eLes~i~e~~   65 (286)
                      ++++++.++..++..+..+.
T Consensus       231 ~~~~~~~~le~l~~~~~~l~  250 (1353)
T TIGR02680       231 QLDEYRDELERLEALERALR  250 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555554443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=90.26  E-value=3.9  Score=35.17  Aligned_cols=62  Identities=19%  Similarity=0.354  Sum_probs=34.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVV--AQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I--~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      +...+..++.+++.++.+++.....+..++..+...+  .++...|..++.++..+++.+..++
T Consensus        73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666666666666655555555555544  3445555555555555555555554

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=90.16  E-value=11  Score=39.16  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          155 DLSAKLEKLQKINDEQKSKIRKTERALKVAE  185 (286)
Q Consensus       155 el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~E  185 (286)
                      .+...+..|+....+....++.|++.+..+.
T Consensus       478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         478 ARDRRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555554444

>PF14282 FlxA: FlxA-like protein

Probab=90.14  E-value=2.9  Score=33.61  Aligned_cols=57  Identities=28%  Similarity=0.412  Sum_probs=33.4

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      ......+..|+.+|..|+.++.++...-   +....+++..+..+..+|..|+..|..++
T Consensus        15 ~~~~~~I~~L~~Qi~~Lq~ql~~l~~~~---~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq   71 (106)
T PF14282_consen   15 GSSDSQIEQLQKQIKQLQEQLQELSQDS---DLDAEQKQQQIQLLQAQIQQLQAQIAQLQ   71 (106)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3347888888888888888888776631   11222334444444455555555554444

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=90.11  E-value=26  Score=36.50  Aligned_cols=12  Identities=25%  Similarity=0.462  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHH
Q 023185          124 QIDNLKKESEKQ  135 (286)
Q Consensus       124 ~Ie~Lk~eie~~  135 (286)
                      .|..|-.+++..
T Consensus       293 ~i~~L~~di~~~  304 (629)
T KOG0963|consen  293 EIAQLSNDIERL  304 (629)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444444

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=89.82  E-value=20  Score=34.60  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL--------------EKLQKINDEQKSKIRKTERALKVAEEEMM  189 (286)
Q Consensus       124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~--------------~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~  189 (286)
                      .+..|+.++...-.+++++...+..-..+...+|..+              +.+--.+.-.+..|..++.....+..-+.
T Consensus       141 q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~  220 (319)
T PF09789_consen  141 QIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTIN  220 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444333              33444444555555555555555555555


Q ss_pred             HHHHH
Q 023185          190 RAKFE  194 (286)
Q Consensus       190 kle~E  194 (286)
                      ++..-
T Consensus       221 KYK~~  225 (319)
T PF09789_consen  221 KYKSA  225 (319)
T ss_pred             HHHHH
Confidence            55443

>PF13514 AAA_27: AAA domain

Probab=89.75  E-value=37  Score=37.72  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT  177 (286)
Q Consensus       144 a~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~l  177 (286)
                      .....+...+..++..+..+.......+..+..+
T Consensus       896 ~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l  929 (1111)
T PF13514_consen  896 AELEELEEELEELEEELEELQEERAELEQELEAL  929 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444444444444433

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=89.69  E-value=11  Score=39.12  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          117 RADELEKQIDNLKKESEKQQKEKEALEARAIEA  149 (286)
Q Consensus       117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~  149 (286)
                      .++.+...|..|...+.......+.|+.+.+.+
T Consensus       475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l  507 (652)
T COG2433         475 EIRARDRRIERLEKELEEKKKRVEELERKLAEL  507 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555444444444444433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=89.63  E-value=5.9  Score=36.81  Aligned_cols=63  Identities=24%  Similarity=0.339  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNL  128 (286)
Q Consensus        51 k~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~L  128 (286)
                      ...+..|+..+...++-+-++.       ..|..++.+|..|.+.|+.++        .++...+.|-+++...|+.+
T Consensus        39 ~~r~~~le~~~~~~~~~~~~l~-------~ql~~lq~ev~~LrG~~E~~~--------~~l~~~~~rq~~~y~dld~r  101 (263)
T PRK10803         39 EDRVTQLERISNAHSQLLTQLQ-------QQLSDNQSDIDSLRGQIQENQ--------YQLNQVVERQKQIYLQIDSL  101 (263)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence            3555556655554444344444       444444444444555544444        22222234555555555553

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.44  E-value=30  Score=36.13  Aligned_cols=47  Identities=11%  Similarity=0.307  Sum_probs=32.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 023185           41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE   87 (286)
Q Consensus        41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~   87 (286)
                      ..+..++++++.++..++.+.+.+.+++..++..++.++..+..++.
T Consensus       205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~  251 (650)
T TIGR03185       205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK  251 (650)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777777777777777777777777777777777766665544

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=89.39  E-value=32  Score=36.49  Aligned_cols=82  Identities=23%  Similarity=0.178  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhccCCchhHHHHHH
Q 023185          140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLL  219 (286)
Q Consensus       140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~~~~g~~l~Pwla~~~~  219 (286)
                      .++......+...+...++.+.+++....+....+...-.....+++++.++........+   ..+|.--.|.|+.+..
T Consensus       562 ~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~---~~~~~s~d~~L~EElk  638 (698)
T KOG0978|consen  562 QEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK---EESGASADEVLAEELK  638 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccccccccHHHHHHHH
Confidence            3333333444444444445555555555555555555555555555555555433332211   1225556677888877


Q ss_pred             HHHHH
Q 023185          220 QCQSL  224 (286)
Q Consensus       220 ~~~~~  224 (286)
                      .|...
T Consensus       639 ~yK~~  643 (698)
T KOG0978|consen  639 EYKEL  643 (698)
T ss_pred             HHHhc
Confidence            77654

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=89.33  E-value=33  Score=36.46  Aligned_cols=154  Identities=22%  Similarity=0.266  Sum_probs=79.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023185           42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK-------EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA  114 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~-------e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka  114 (286)
                      ++..++.-..+-..+++.++..+..++.+.|.+==.+       ...++.+..+...|...|..+.        ......
T Consensus       451 ~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~--------~~~~~~  522 (698)
T KOG0978|consen  451 CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLK--------ASVDKL  522 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence            3444555555666666666666666666666543222       2233333333333333333332        222222


Q ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          115 HARADELEK-------QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE  187 (286)
Q Consensus       115 ~~Ri~eLek-------~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eee  187 (286)
                      ..+++.|++       .+..+.+++......++.+.....++......+...++..+..+.+-+..++.+...+...-..
T Consensus       523 ~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k  602 (698)
T KOG0978|consen  523 ELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK  602 (698)
T ss_pred             HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444       4444455555555555555555555566666666666666666666666666666555555555


Q ss_pred             HHHHHHHhhhhhHHHh
Q 023185          188 MMRAKFEATSRSKELT  203 (286)
Q Consensus       188 i~kle~Ea~~~a~ql~  203 (286)
                      ..+++.+......++.
T Consensus       603 ~~rleEE~e~L~~kle  618 (698)
T KOG0978|consen  603 RKRLEEELERLKRKLE  618 (698)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555555554443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.31  E-value=17  Score=33.19  Aligned_cols=17  Identities=35%  Similarity=0.644  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 023185          117 RADELEKQIDNLKKESE  133 (286)
Q Consensus       117 Ri~eLek~Ie~Lk~eie  133 (286)
                      |+..++..|+.++..++
T Consensus        71 r~~~l~~~i~~~~~~i~   87 (302)
T PF10186_consen   71 RLERLRERIERLRKRIE   87 (302)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=89.29  E-value=36  Score=36.88  Aligned_cols=60  Identities=17%  Similarity=0.295  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA  180 (286)
Q Consensus       121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~  180 (286)
                      +.+...+|.++.......-..+.......+..+..+....+..+..+++++..+-.++.-
T Consensus       349 fddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~  408 (1265)
T KOG0976|consen  349 FDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG  408 (1265)
T ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence            333333433333333333333333334444444444455555555555555555555444

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=89.26  E-value=15  Score=32.50  Aligned_cols=60  Identities=23%  Similarity=0.409  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHARADELEKQIDNLKKESE  133 (286)
Q Consensus        71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie  133 (286)
                      +...++.+++.+......|..++.+|....... .-..+..++.   ++..|++.+..|+.++.
T Consensus        67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~---~l~~l~~~~~~l~~el~  127 (188)
T PF03962_consen   67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLE---ELEELKKELKELKKELE  127 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555553222 1122232222   55555555555555555

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=89.18  E-value=21  Score=36.27  Aligned_cols=39  Identities=13%  Similarity=0.209  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL  181 (286)
Q Consensus       143 Ea~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~l  181 (286)
                      -+.+..+-..+...+.+.+.|.+.+.+++..++..-..+
T Consensus       374 n~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~sl  412 (622)
T COG5185         374 NQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSL  412 (622)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHH
Confidence            334444444444555556666666665555544443333

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=89.16  E-value=0.97  Score=43.46  Aligned_cols=48  Identities=29%  Similarity=0.392  Sum_probs=0.0

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        52 ~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      ..+..+.+.+.+++.+|..+...|.+....|+.++..|..++..|+.+
T Consensus        49 ~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~l   96 (326)
T PF04582_consen   49 DSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSL   96 (326)
T ss_dssp             ------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333334444444444444444444443333333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=89.12  E-value=24  Score=34.56  Aligned_cols=14  Identities=14%  Similarity=0.181  Sum_probs=5.0

Q ss_pred             HhhHHHHHHhhhhH
Q 023185           58 ESHIDEKTQELKGK   71 (286)
Q Consensus        58 es~i~e~~~eL~~~   71 (286)
                      +.++.++.+++...
T Consensus       177 ~~ql~~~~~~l~~a  190 (444)
T TIGR03017       177 VQQIAALREDLARA  190 (444)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=88.90  E-value=0.12  Score=55.51  Aligned_cols=161  Identities=21%  Similarity=0.328  Sum_probs=0.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA  118 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri  118 (286)
                      .-..+...++.++.++..|+.....+..++..+...++........+......+...+...+.+. -........++...
T Consensus       329 ~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~-~~~~~e~d~~q~e~  407 (859)
T PF01576_consen  329 KLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKV-EELQAERDAAQREA  407 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence            33444556666666666666666666666666655555555555555555555555555544333 11111122222222


Q ss_pred             HH-------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          119 DE-------LEKQ-------IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA  184 (286)
Q Consensus       119 ~e-------Lek~-------Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~  184 (286)
                      +.       |+..       ++.+.............|.....+....+.++...+..|+..+.+++..+..++.++...
T Consensus       408 r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~  487 (859)
T PF01576_consen  408 RELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE  487 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22       2222       333333333333333334444444455566677777777777777777777777777777


Q ss_pred             HHHHHHHHHHhhhhhH
Q 023185          185 EEEMMRAKFEATSRSK  200 (286)
Q Consensus       185 Eeei~kle~Ea~~~a~  200 (286)
                      +....+++.+....-.
T Consensus       488 E~~~lRl~~el~~~r~  503 (859)
T PF01576_consen  488 EQKKLRLQVELQQLRQ  503 (859)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777776666655433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK04406 hypothetical protein; Provisional

Probab=88.88  E-value=5.1  Score=30.39  Aligned_cols=51  Identities=22%  Similarity=0.241  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR  190 (286)
Q Consensus       140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k  190 (286)
                      ..++.|..+++.++.-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..
T Consensus         7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~   57 (75)
T PRK04406          7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN   57 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457888888888888999999999999999999999998887777555544

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=88.86  E-value=2.9  Score=31.00  Aligned_cols=51  Identities=27%  Similarity=0.400  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK  192 (286)
Q Consensus       142 LEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle  192 (286)
                      ++.+..+++.++.-.+..++.|.+.+.+|+..|+.+++.+..+...+..+.
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            577778888888888888889999999999999999988888877777664

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK15396 murein lipoprotein; Provisional

Probab=88.58  E-value=4.2  Score=31.23  Aligned_cols=15  Identities=27%  Similarity=0.388  Sum_probs=8.4

Q ss_pred             CchhHHHHHHHHHHH
Q 023185            1 MAASKLVIFSLFFAL   15 (286)
Q Consensus         1 ~~~~~~~~~~~~~~~   15 (286)
                      |...+|++.++.+++
T Consensus         1 m~~~kl~l~av~ls~   15 (78)
T PRK15396          1 MNRTKLVLGAVILGS   15 (78)
T ss_pred             CchhHHHHHHHHHHH
Confidence            555566666555433

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=88.54  E-value=8.3  Score=33.09  Aligned_cols=33  Identities=27%  Similarity=0.438  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q 023185           46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK   78 (286)
Q Consensus        46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~   78 (286)
                      ++..+..+|.+|+.++.++..+++.+..++..+
T Consensus        73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L  105 (169)
T PF07106_consen   73 ELAELDAEIKELREELAELKKEVKSLEAELASL  105 (169)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444433333333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.22  E-value=34  Score=35.32  Aligned_cols=39  Identities=26%  Similarity=0.350  Sum_probs=16.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        61 i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      |+...++.+.+.+.++.++..+.++....-.+++...++
T Consensus       333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassL  371 (654)
T KOG4809|consen  333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSL  371 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444443333

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=87.98  E-value=51  Score=36.99  Aligned_cols=36  Identities=8%  Similarity=0.118  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR  190 (286)
Q Consensus       155 el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k  190 (286)
                      ..+...+=.+...+....+++.++..++.++..+..
T Consensus       198 s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~  233 (1109)
T PRK10929        198 SANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS  233 (1109)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444455555666666666666666655

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=87.93  E-value=14  Score=30.92  Aligned_cols=54  Identities=13%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      -++|++.-..   |.+.+..++++|..+|..+++.....+.+.+++..+...++...
T Consensus        49 ~kql~~vs~~---l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~  102 (126)
T PF07889_consen   49 SKQLEQVSES---LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG  102 (126)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3445444443   44455555677777777777777777777777766666666664

The region featured in this family is approximately 100 amino acids long.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.64  E-value=26  Score=33.20  Aligned_cols=46  Identities=24%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023185          155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK  200 (286)
Q Consensus       155 el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~  200 (286)
                      --+..+.-++.....-+.+|..++..++....++++.+..+.....
T Consensus        92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~  137 (307)
T PF10481_consen   92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDV  137 (307)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence            3344455555555666778999999999999999998877765443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PRK00295 hypothetical protein; Provisional

Probab=87.57  E-value=6  Score=29.39  Aligned_cols=50  Identities=18%  Similarity=0.191  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       142 LEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      ++++..+++.++.-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~   52 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM   52 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56677788888888888888888889999999988888877776655554

>PRK02793 phi X174 lysis protein; Provisional

Probab=87.53  E-value=5.8  Score=29.81  Aligned_cols=51  Identities=22%  Similarity=0.308  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       141 eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      .+++|..+++.++.-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus         5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~   55 (72)
T PRK02793          5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS   55 (72)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            477888888888888888999999999999999998888877776655543

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=87.38  E-value=56  Score=36.82  Aligned_cols=83  Identities=16%  Similarity=0.205  Sum_probs=39.9

Q ss_pred             HhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           66 QELKGKDEVVAQKEKAIQDKS-ERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEA  144 (286)
Q Consensus        66 ~eL~~~d~~I~q~e~~i~e~~-~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa  144 (286)
                      ...+++++.|.++.....+++ .+++-+|.++...+.+. ...+.++.+...+++.++++++.+++.........+.+.+
T Consensus       465 ~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~-~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~  543 (1317)
T KOG0612|consen  465 EMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKL-SEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNS  543 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            445555555555555555555 35555666666555333 2222333333445555555555554444444333333333


Q ss_pred             HHHHH
Q 023185          145 RAIEA  149 (286)
Q Consensus       145 ~~~e~  149 (286)
                      .+..+
T Consensus       544 ~rk~l  548 (1317)
T KOG0612|consen  544 LRKQL  548 (1317)
T ss_pred             HHHHH
Confidence            33333

>PRK00736 hypothetical protein; Provisional

Probab=87.37  E-value=5.5  Score=29.58  Aligned_cols=50  Identities=20%  Similarity=0.299  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       142 LEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      ++.+..+++.++...+..++.|.+.+.+|+..|+.+.+.+..+-..+...
T Consensus         3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~   52 (68)
T PRK00736          3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL   52 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46677788888888888888999999999999999998887776666553

>PRK02119 hypothetical protein; Provisional

Probab=87.31  E-value=6.4  Score=29.65  Aligned_cols=52  Identities=29%  Similarity=0.260  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      ..+++|..+++.++.-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus         5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~   56 (73)
T PRK02119          5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM   56 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4577888888888888888888899999999999988888877776555443

>PRK04325 hypothetical protein; Provisional

Probab=87.26  E-value=6.4  Score=29.73  Aligned_cols=51  Identities=18%  Similarity=0.221  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       141 eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      .++.+..+++.++.-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus         6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325          6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            466777788888888888888888888899999988888877776655443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=87.07  E-value=0.84  Score=48.12  Aligned_cols=51  Identities=22%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE   95 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~e   95 (286)
                      ..+.+++..-..|..+...+..++..++..+..++.++.....++..+...
T Consensus       343 ~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~  393 (722)
T PF05557_consen  343 RALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEAS  393 (722)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444333333333333333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=86.47  E-value=0.21  Score=52.52  Aligned_cols=17  Identities=24%  Similarity=0.468  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhH
Q 023185           45 IELDQLKSKIRSLESHI   61 (286)
Q Consensus        45 ~el~elk~ki~eLes~i   61 (286)
                      .++..++.++..++...
T Consensus       246 ~ql~~L~~el~~~e~~~  262 (713)
T PF05622_consen  246 AQLRRLREELERLEEQR  262 (713)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PHA03332 membrane glycoprotein; Provisional

Probab=86.39  E-value=57  Score=36.29  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE   79 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e   79 (286)
                      +++=+.-..+..+.+.|...+..+..+...+.+.=
T Consensus       884 ~~llqnaaaia~mksaIg~tNaAV~~lsDai~klG  918 (1328)
T PHA03332        884 NQLLQATAATAEMASKIGGLNARVDKTSDVITKLG  918 (1328)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444455555555555554444444444444333

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=86.31  E-value=18  Score=30.00  Aligned_cols=38  Identities=21%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI   82 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i   82 (286)
                      .+++++......++..++.+...+..+...+.+...-+
T Consensus         6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~   43 (140)
T PRK03947          6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAK   43 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666555555555555554444333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=86.07  E-value=26  Score=31.65  Aligned_cols=43  Identities=28%  Similarity=0.421  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS   86 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~   86 (286)
                      +.++.+.+.+....+..+......+.++..++...+.++....
T Consensus        37 r~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~   79 (202)
T PF06818_consen   37 RAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK   79 (202)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh
Confidence            3334444444444444444444333333334443343333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=85.96  E-value=30  Score=32.35  Aligned_cols=36  Identities=17%  Similarity=0.167  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185          161 EKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT  196 (286)
Q Consensus       161 ~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~  196 (286)
                      ..+.+........|++++..+..+..++..+.....
T Consensus       189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~  224 (258)
T PF15397_consen  189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ  224 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345555555555555555555555555555544443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.92  E-value=28  Score=31.93  Aligned_cols=36  Identities=22%  Similarity=0.176  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023185          163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR  198 (286)
Q Consensus       163 Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~  198 (286)
                      |+.+..+.+..............+++..+..+.+..
T Consensus        65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~  100 (230)
T PF10146_consen   65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL  100 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333344444444444444444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=85.54  E-value=41  Score=33.44  Aligned_cols=33  Identities=9%  Similarity=0.085  Sum_probs=26.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhH
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGK   71 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~   71 (286)
                      +...+..+++.++.++..++.+...+..+++..
T Consensus        91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~  123 (457)
T TIGR01000        91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSI  123 (457)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778899999999999999888887777654

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK00846 hypothetical protein; Provisional

Probab=85.51  E-value=11  Score=28.86  Aligned_cols=54  Identities=20%  Similarity=0.286  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK  192 (286)
Q Consensus       139 k~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle  192 (286)
                      -+.+++|..+++.++.-.+..++.|.+.+..|+..|+.+...+..+-..+..++
T Consensus         8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846          8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356788888888888888888888888888899999888888777766665553

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.42  E-value=36  Score=32.70  Aligned_cols=30  Identities=17%  Similarity=0.182  Sum_probs=12.6

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHH
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKD   72 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d   72 (286)
                      ++++...++..+.-.......+..+++.+.
T Consensus        32 L~qen~~Lk~El~~ek~~~~~L~~e~~~lr   61 (310)
T PF09755_consen   32 LQQENRVLKRELETEKARCKHLQEENRALR   61 (310)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444433

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=85.38  E-value=33  Score=32.25  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE  122 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLe  122 (286)
                      +.+...+++..+.+.+....++..+   ++.+++++++...++....+.|-.+...++.+. -+..-+-+   ..+..|+
T Consensus        25 ykq~f~~~reEl~EFQegSrE~Eae---lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~-e~q~~q~y---~q~s~Le   97 (333)
T KOG1853|consen   25 YKQHFLQMREELNEFQEGSREIEAE---LESQLDQLETRNRDLETRNQRLTTEQERNKEKQ-EDQRVQFY---QQESQLE   97 (333)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHH
Confidence            4556677788888887777776654   577888888888888888888888888776544 11111111   2444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          123 KQIDNLKKESEKQQKEKEALEARAIEA  149 (286)
Q Consensus       123 k~Ie~Lk~eie~~~~kk~eLEa~~~e~  149 (286)
                      +.+...++..+.+.....+||..-.++
T Consensus        98 ddlsqt~aikeql~kyiReLEQaNDdL  124 (333)
T KOG1853|consen   98 DDLSQTHAIKEQLRKYIRELEQANDDL  124 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            555555555555555555555444444

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=85.26  E-value=65  Score=35.59  Aligned_cols=24  Identities=13%  Similarity=0.226  Sum_probs=15.0

Q ss_pred             HHHHhHHhhhhhchhhHHhhhhhh
Q 023185          243 KALEKKAQAGKWVQPHVETIKAVS  266 (286)
Q Consensus       243 ~~~~~~~~~~~~~~ph~~~~~~~~  266 (286)
                      .-+.-+-+|-.|..-|=..||..|
T Consensus       427 ~~~~d~~dAy~wlrenr~~FK~~v  450 (1072)
T KOG0979|consen  427 QGSSDAYDAYQWLRENRSEFKDEV  450 (1072)
T ss_pred             cCchHHHHHHHHHHHCHHHhcccc
Confidence            334445567777777776666654

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=85.24  E-value=20  Score=29.69  Aligned_cols=39  Identities=13%  Similarity=0.294  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023185           46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD   84 (286)
Q Consensus        46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e   84 (286)
                      ++...=.+..+|+++++.+.-+...++..|.+.++-+++
T Consensus         7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~E   45 (119)
T COG1382           7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEE   45 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555555555555555554444333

>PRK02119 hypothetical protein; Provisional

Probab=85.06  E-value=7  Score=29.47  Aligned_cols=50  Identities=16%  Similarity=0.270  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS   97 (286)
Q Consensus        48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~   97 (286)
                      ..+..+|..||..+.=...-|..++..+..-++.|..+..++..|-..+.
T Consensus         5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~   54 (73)
T PRK02119          5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK   54 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555554444444444444444444444444444444444443

>PRK04406 hypothetical protein; Provisional

Probab=84.43  E-value=9.2  Score=29.02  Aligned_cols=49  Identities=16%  Similarity=0.324  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS   97 (286)
Q Consensus        49 elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~   97 (286)
                      .+..+|.+||..+.=...-|..++..+.+-++.|..+..++..|-..+.
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~   56 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK   56 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444443

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=84.30  E-value=22  Score=29.40  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          116 ARADELEKQIDNLKKESEKQQKEKEALEARAIE  148 (286)
Q Consensus       116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e  148 (286)
                      +|+..+++.+..+..++...+...+.+......
T Consensus       101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~  133 (140)
T PRK03947        101 KRKEELEKALEKLEEALQKLASRIAQLAQELQQ  133 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555554444444444333

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=84.19  E-value=33  Score=31.32  Aligned_cols=10  Identities=20%  Similarity=0.195  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 023185          124 QIDNLKKESE  133 (286)
Q Consensus       124 ~Ie~Lk~eie  133 (286)
                      .+..++....
T Consensus       100 ~~~~~~~~~~  109 (225)
T COG1842         100 LAKALEAELQ  109 (225)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=84.10  E-value=30  Score=30.74  Aligned_cols=45  Identities=16%  Similarity=0.243  Sum_probs=22.7

Q ss_pred             HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK  101 (286)
Q Consensus        57 Les~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk  101 (286)
                      |+..|.++...+......+...-..-..++.++..+...+...+.
T Consensus        28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~   72 (221)
T PF04012_consen   28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK   72 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445555555555555555555555555555543

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF14282 FlxA: FlxA-like protein

Probab=83.99  E-value=5.3  Score=32.10  Aligned_cols=18  Identities=22%  Similarity=0.294  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 023185          118 ADELEKQIDNLKKESEKQ  135 (286)
Q Consensus       118 i~eLek~Ie~Lk~eie~~  135 (286)
                      +..|..+|..|..+|..+
T Consensus        53 ~q~Lq~QI~~LqaQI~ql   70 (106)
T PF14282_consen   53 IQLLQAQIQQLQAQIAQL   70 (106)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333444444444433

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=83.96  E-value=7  Score=28.96  Aligned_cols=48  Identities=19%  Similarity=0.376  Sum_probs=18.2

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        52 ~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      .+|.+||..+.=...-|..++..+..-+..|..+...+..|..++.+.
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~   51 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL   51 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444444433333333344444444444444444444444444333

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=83.86  E-value=87  Score=35.86  Aligned_cols=15  Identities=33%  Similarity=0.490  Sum_probs=6.2

Q ss_pred             hHHHHHHHHHHHHHH
Q 023185           43 LKIELDQLKSKIRSL   57 (286)
Q Consensus        43 l~~el~elk~ki~eL   57 (286)
                      ++..++.++..+..|
T Consensus       235 ~~~~le~l~~~~~~l  249 (1353)
T TIGR02680       235 YRDELERLEALERAL  249 (1353)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=83.51  E-value=83  Score=35.36  Aligned_cols=38  Identities=5%  Similarity=0.115  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023185          165 KINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL  202 (286)
Q Consensus       165 k~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql  202 (286)
                      +...++-..++.+-++...++..++++....+.+..++
T Consensus       272 ~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi  309 (1109)
T PRK10929        272 QALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS  309 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444443333333333

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=83.26  E-value=48  Score=32.42  Aligned_cols=20  Identities=10%  Similarity=0.408  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHH
Q 023185           44 KIELDQLKSKIRSLESHIDE   63 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e   63 (286)
                      ..++.+++.++...+.+..+
T Consensus       214 ~~~l~~l~~~l~~~~~~~~~  233 (444)
T TIGR03017       214 RARLNELSAQLVAAQAQVMD  233 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            35566666666655555433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=83.06  E-value=29  Score=29.78  Aligned_cols=49  Identities=20%  Similarity=0.283  Sum_probs=26.3

Q ss_pred             HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 023185           50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEK---AIQDKSERIVSLQKELSS   98 (286)
Q Consensus        50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~---~i~e~~~eI~~Lq~eI~~   98 (286)
                      .+.+...++.+.+.+..+|...+..|..+.+   ...+++.+|..|+.+...
T Consensus        18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~   69 (155)
T PF06810_consen   18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKT   69 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            4444444555555555555555555555554   555555555555555553

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=82.74  E-value=27  Score=29.25  Aligned_cols=59  Identities=12%  Similarity=0.162  Sum_probs=34.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      .+-+=+..+=.....--...+.+...+..++..+..++..+..+..++..++.++...+
T Consensus        35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~   93 (151)
T PF11559_consen   35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAE   93 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555566666666666666666666666666666666665554

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK04325 hypothetical protein; Provisional

Probab=82.70  E-value=10  Score=28.66  Aligned_cols=49  Identities=14%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        51 k~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      ..+|.+||.++.=...-|..++..+.+-++.|..+..++..|-.++.+.
T Consensus         8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325          8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444444444444445555555555555555555554444443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=82.67  E-value=73  Score=34.09  Aligned_cols=58  Identities=14%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      .+..++.+++..+.++....+....+...+.............++.+...|-.+|...
T Consensus        31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~   88 (717)
T PF09730_consen   31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEY   88 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555555555555555555555555555444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=82.64  E-value=51  Score=32.29  Aligned_cols=48  Identities=17%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023185           72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE  120 (286)
Q Consensus        72 d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~e  120 (286)
                      ...-++++..+.....+|..++..|..+++.+ .+...-+.-|+.|+..
T Consensus       257 ~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai-~~k~~~lkvaqTRL~~  304 (384)
T PF03148_consen  257 QEAKNELEWQLKKTLQEIAEMEKNIEDLEKAI-RDKEGPLKVAQTRLEN  304 (384)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHhh
Confidence            33334444444444455555555555554444 2222233333445444

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=82.55  E-value=66  Score=33.96  Aligned_cols=112  Identities=17%  Similarity=0.234  Sum_probs=65.9

Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHH
Q 023185           36 DAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE--TLNAAEQVDK  113 (286)
Q Consensus        36 ~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl--~~~~~eqi~k  113 (286)
                      .+++...++-.|-.+......|.=+.+-++.++..--++|..+|.-|.+++.+++..+.-+   |.++  ....+.+.+.
T Consensus       102 s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmL---QqellsrtsLETqKlD  178 (861)
T KOG1899|consen  102 SCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEML---QQELLSRTSLETQKLD  178 (861)
T ss_pred             cCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHH---HHHHHhhhhHHHHHhH
Confidence            3456667777787777777777777777888888888888888888888888776655443   3322  1112233333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS  157 (286)
Q Consensus       114 a~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~  157 (286)
                      ..+.       |..||=.+..++.+..+.|.+.+..+..+.+++
T Consensus       179 Lmae-------vSeLKLkltalEkeq~e~E~K~R~se~l~qevn  215 (861)
T KOG1899|consen  179 LMAE-------VSELKLKLTALEKEQNETEKKLRLSENLMQEVN  215 (861)
T ss_pred             HHHH-------HHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence            2223       444444444444444444555555555555544

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=82.51  E-value=32  Score=29.85  Aligned_cols=45  Identities=13%  Similarity=0.316  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER   88 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~e   88 (286)
                      +++.+.++..+.++...+..+-.+.+.+...-...-..+.+.+..
T Consensus        26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~   70 (159)
T PF05384_consen   26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRN   70 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444444444444444444444444444444444444444444433

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=82.39  E-value=31  Score=29.71  Aligned_cols=105  Identities=20%  Similarity=0.204  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---
Q 023185          124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK---  200 (286)
Q Consensus       124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~---  200 (286)
                      ....|...+++.+.+...|..........++-...++..+.......+..|......+..+..++..+..+-.....   
T Consensus        50 en~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~  129 (177)
T PF13870_consen   50 ENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNK  129 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666665565555555555555555555555555555556666666666666666555544443322   


Q ss_pred             HHhhhhccCCchhHHHHHHHHHHHHhhh
Q 023185          201 ELTEVHSAWLPPWLAVHLLQCQSLIETH  228 (286)
Q Consensus       201 ql~~~~g~~l~Pwla~~~~~~~~~~~~~  228 (286)
                      .+...+|.+-.|-|--.|+.+.......
T Consensus       130 ~l~~~~~~~~~P~ll~Dy~~~~~~~~~l  157 (177)
T PF13870_consen  130 KLRQQGGLLGVPALLRDYDKTKEEVEEL  157 (177)
T ss_pred             HHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence            3344457777777776677776655443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=82.19  E-value=61  Score=32.90  Aligned_cols=63  Identities=22%  Similarity=0.249  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE  186 (286)
Q Consensus       124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Ee  186 (286)
                      .|.+|+..++.+...+-..--.++++++.+.-+...++..++-..+-...-..+.=+++.+..
T Consensus       363 iinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~  425 (527)
T PF15066_consen  363 IINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKA  425 (527)
T ss_pred             HHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            566666666666555544444445555544444444444444444444443333333333333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=82.05  E-value=37  Score=30.28  Aligned_cols=51  Identities=29%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          109 EQVDKAHARADELEKQIDNL-KKESEKQQKEKEALEARAIEAEKKISDLSAK  159 (286)
Q Consensus       109 eqi~ka~~Ri~eLek~Ie~L-k~eie~~~~kk~eLEa~~~e~e~k~~el~~k  159 (286)
                      .++.+.+..+..|++++.+- =.+.+....+...++.+..+.+.++..+...
T Consensus        96 ~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~  147 (194)
T PF15619_consen   96 EELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ  147 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444433311 1223444444455555555555555554443

>PRK09343 prefoldin subunit beta; Provisional

Probab=81.67  E-value=28  Score=28.58  Aligned_cols=18  Identities=11%  Similarity=0.418  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHhhHHH
Q 023185           46 ELDQLKSKIRSLESHIDE   63 (286)
Q Consensus        46 el~elk~ki~eLes~i~e   63 (286)
                      ++.+.-.+...++.++..
T Consensus         8 ~~q~~~~~~q~lq~~l~~   25 (121)
T PRK09343          8 EVQAQLAQLQQLQQQLER   25 (121)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=81.53  E-value=61  Score=32.43  Aligned_cols=53  Identities=17%  Similarity=0.124  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL   96 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI   96 (286)
                      .+.+-+++.++++-++..+.+..++..+..+-...-..+..++..|+.|+.+.
T Consensus        12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~   64 (459)
T KOG0288|consen   12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEEN   64 (459)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555444444444444444444444444443

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=81.50  E-value=48  Score=31.20  Aligned_cols=20  Identities=25%  Similarity=0.307  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 023185          124 QIDNLKKESEKQQKEKEALE  143 (286)
Q Consensus       124 ~Ie~Lk~eie~~~~kk~eLE  143 (286)
                      ++..|..++-.....++.|.
T Consensus        92 q~s~Leddlsqt~aikeql~  111 (333)
T KOG1853|consen   92 QESQLEDDLSQTHAIKEQLR  111 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444433333333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=81.39  E-value=7.4  Score=37.42  Aligned_cols=8  Identities=13%  Similarity=0.297  Sum_probs=4.1

Q ss_pred             hhccCCch
Q 023185          205 VHSAWLPP  212 (286)
Q Consensus       205 ~~g~~l~P  212 (286)
                      |.|.|-++
T Consensus       323 Y~G~f~~~  330 (344)
T PF12777_consen  323 YLGPFTPE  330 (344)
T ss_dssp             CCCCTSHH
T ss_pred             HcCCCCHH
Confidence            44655444

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=81.16  E-value=57  Score=32.37  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          124 QIDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE  178 (286)
Q Consensus       124 ~Ie~Lk~eie~~~~kk-~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE  178 (286)
                      +|..||.++..+..+. .....+++++..-+.....++..|+....+|-.++.-++
T Consensus       277 Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~  332 (395)
T PF10267_consen  277 EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTE  332 (395)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence            6777777777665555 455678888888888888888888833333444444444

Its function is unknown.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=80.93  E-value=71  Score=32.84  Aligned_cols=81  Identities=21%  Similarity=0.287  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM  189 (286)
Q Consensus       110 qi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~  189 (286)
                      ++..+|..++-+.++|..+-.+.-.+..+.-.|.+...++.++...+.-.++.+......++..-+++...+...++.+.
T Consensus       206 elrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA  285 (596)
T KOG4360|consen  206 ELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA  285 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33444456666666677777777777667777777777777777776666666666666666666666666665555555


Q ss_pred             H
Q 023185          190 R  190 (286)
Q Consensus       190 k  190 (286)
                      +
T Consensus       286 E  286 (596)
T KOG4360|consen  286 E  286 (596)
T ss_pred             H
Confidence            4

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=80.57  E-value=22  Score=27.98  Aligned_cols=41  Identities=20%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185           62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK  102 (286)
Q Consensus        62 ~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk  102 (286)
                      .....+|..+|.+-.++...++.+..+.+.+..+|......
T Consensus        25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~   65 (108)
T PF02403_consen   25 EEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA   65 (108)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence            34556667777777777777777777777777777666543

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=80.40  E-value=54  Score=31.09  Aligned_cols=27  Identities=15%  Similarity=0.340  Sum_probs=15.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHH
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDEKT   65 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e~~   65 (286)
                      |...++.++++++.++...+.+++...
T Consensus        80 d~~~~~~~l~~a~a~l~~a~a~l~~~~  106 (346)
T PRK10476         80 DPRPYELTVAQAQADLALADAQIMTTQ  106 (346)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455566666666666665554443

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=80.38  E-value=19  Score=37.45  Aligned_cols=69  Identities=14%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185          128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT  196 (286)
Q Consensus       128 Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~  196 (286)
                      .+.-++....+.-+||.+++++...+++++.+++.+++..-..+..+..++..+.+++..+.++....+
T Consensus        84 ~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~  152 (907)
T KOG2264|consen   84 QKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN  152 (907)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence            333344555556778888888888888888888888888888888888888888888887777655444

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=80.16  E-value=76  Score=32.68  Aligned_cols=33  Identities=33%  Similarity=0.339  Sum_probs=20.0

Q ss_pred             HhhhhhchhhHHhhhhhhccCcCchHHHHHHHHH
Q 023185          249 AQAGKWVQPHVETIKAVSSFSYSSIPEILKYIEE  282 (286)
Q Consensus       249 ~~~~~~~~ph~~~~~~~~~~~~~~~~~~~~~~~~  282 (286)
                      .+..++...-.+.+... ...||.|-+.++.+.+
T Consensus       354 ~~l~~~~~~~~~~i~~~-~~~yS~i~~~l~~~~~  386 (560)
T PF06160_consen  354 KELEKRYEDLEERIEEQ-QVPYSEIQEELEEIEE  386 (560)
T ss_pred             HHHHHHHHHHHHHHHcC-CcCHHHHHHHHHHHHH
Confidence            34455555555555555 5678887777766543

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=80.04  E-value=0.55  Score=49.41  Aligned_cols=19  Identities=26%  Similarity=0.590  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhhHHHH
Q 023185           46 ELDQLKSKIRSLESHIDEK   64 (286)
Q Consensus        46 el~elk~ki~eLes~i~e~   64 (286)
                      ++..++.++..|+.+....
T Consensus       240 ~~~~l~~ql~~L~~el~~~  258 (713)
T PF05622_consen  240 ELADLRAQLRRLREELERL  258 (713)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-14
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-06
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	6e-06
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	4e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	6e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	1e-04
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	3e-04

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
             K     L++KI  L+  IDE+ +E K    ++ +        S     L+ ++  L+  
Sbjct: 919  YKKLHIGLENKIMQLQRKIDEQNKEYK---SLLEKMNNLEITYSTETEKLRSDVERLRMS 975

Query: 103  ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
            E     E+   A  R   L+++I  L+KE  + Q EK+ +E  A + + +   L ++L++
Sbjct: 976  E-----EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030

Query: 163  LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202
               +   +K ++ +          E M  K    ++  EL
Sbjct: 1031 QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLEL 1070

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 61.3 bits (149), Expect = 9e-11
 Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 12/141 (8%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK- 101
               E   L  K+ +LE     +T++L+   E +   E+  ++ + R++SLQ+E++ L+K 
Sbjct: 940  QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999

Query: 102  -----KETLNAAEQVDKAHARAD----ELEKQIDNLKKESEKQQKEKEALEARAIEAEKK 152
                  E     E  DK     +    EL++Q   LK E E+  +          E  +K
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK 1059

Query: 153  ISDLSAKLEKLQKINDEQKSK 173
               L  + ++L+   ++++ +
Sbjct: 1060 --KLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL 105
               ++    +L++ +       K +  +   K   IQ      ++      +L+    L
Sbjct: 834 RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893

Query: 106 NAAEQVDKAHARADEL---EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
               +   A     +L    + ++  KK     + +   L+ +  E  K+   L  K+  
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953

Query: 163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
           L+     +  K+R     L+++EEE       AT+R   L E
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEE----AKNATNRVLSLQE 991

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 29/171 (16%), Positives = 62/171 (36%), Gaps = 12/171 (7%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK-------EKAIQDKSERIVSLQKE 95
            ++     L++ +R      ++    L+    ++ QK               + IV LQ  
Sbjct: 838  MRDATIALQALLRGYLVR-NKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896

Query: 96   LSSLQKKETLN----AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151
               +  K  L      A  V++       LE +I  L+++ ++Q KE ++L  +    E 
Sbjct: 897  YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956

Query: 152  KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202
              S  + KL    +     + + +     +   +EE+ + + E      E 
Sbjct: 957  TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 22/168 (13%), Positives = 59/168 (35%), Gaps = 14/168 (8%)

Query: 44   KIELDQLKSKIRSLESHIDEKT-----QELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98
            ++   +    I  L+            ++LK +   V + +K       +I+ LQ+++  
Sbjct: 880  RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE 939

Query: 99   LQKKETLNAAEQVDKAHARADELEKQIDNLKKESE---KQQKEKEALEARAIEAEKKISD 155
              K+        ++K +        + + L+ + E     ++E +    R +  +++I+ 
Sbjct: 940  QNKE----YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995

Query: 156  LSAKLEKLQKINDEQKSKIRKTERAL--KVAEEEMMRAKFEATSRSKE 201
            L  +L + Q      +    K +      V+E +      +       
Sbjct: 996  LRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 74  VVAQKEKAIQDKSERIVSLQKELSSLQKKETL--NAAEQVDKAHARADELEKQIDNLKKE 131
           VV ++ + ++D +  + +L +      K + +       + + H R            K 
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889

Query: 132 SEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191
               Q     + A+     KK+   +  +E+ +K++   ++KI + +R  K+ E+     
Sbjct: 890 IVYLQCCYRRMMAK--RELKKLKIEARSVERYKKLHIGLENKIMQLQR--KIDEQNKEYK 945

Query: 192 KFEATSRSKELT 203
                  + E+T
Sbjct: 946 SLLEKMNNLEIT 957

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 29/162 (17%), Positives = 67/162 (41%), Gaps = 1/162 (0%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
            L+ E  +++ ++  LE  ++E+    +         +  I+   + I+ ++ + + L K 
Sbjct: 946  LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK- 1004

Query: 103  ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
            E     E+V        E E++  NL K   K +     LE R  + EK   +L     K
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064

Query: 163  LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
            L+  + +   +I + +  +   + ++ + + E  +    L +
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.5 bits (157), Expect = 7e-12
 Identities = 29/162 (17%), Positives = 74/162 (45%), Gaps = 1/162 (0%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
            L  +  +L+  +  +E+ I+E+ +  +       + ++ + D  E++   +     LQ  
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL- 976

Query: 103  ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
            E + A  ++ K       +E Q + L KE +  ++    L     E E+K  +L+    K
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 163  LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
             + +  E + +++K E++ +  E+   + + E++   +++ E
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.2 bits (151), Expect = 5e-11
 Identities = 36/172 (20%), Positives = 78/172 (45%), Gaps = 12/172 (6%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
            L  E   L+ ++  L +++ E+ ++ K   ++  + E  I +   R+   +K    L+K 
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061

Query: 103  ------ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156
                  E+ +  EQ+ +  A+  EL+ Q+   ++E +      E   ++   A KKI +L
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121

Query: 157  SAKLEKLQKINDEQKSKIRKTERALKVAEEEM------MRAKFEATSRSKEL 202
             + +  LQ+  + +K+   K E+  +   EE+      +    + T+  +EL
Sbjct: 1122 ESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.2 bits (151), Expect = 5e-11
 Identities = 31/162 (19%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 48   DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNA 107
            +++++K   L+   + + +      E+  +  +  ++K+     LQ E     + E +  
Sbjct: 857  EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV 916

Query: 108  AEQVDKAH--ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165
                 K        E+E +I+  ++ S++ Q EK+ ++ + ++ E+++ +  A  +KLQ 
Sbjct: 917  RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976

Query: 166  INDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHS 207
                   KI+K E  + + E++      + T   K L E  S
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNN----KLTKERKLLEERVS 1014

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.8 bits (150), Expect = 6e-11
 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 11/165 (6%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
            L  E + L+ K+++      E  +          + E+ + +   RI   ++    LQ +
Sbjct: 890  LCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949

Query: 103  ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
            +         K   +  +LE+Q++  +   +K Q EK   + +  + E  I  +  +  K
Sbjct: 950  K--------KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001

Query: 163  LQKINDEQKSKIRKTERALKVAEE---EMMRAKFEATSRSKELTE 204
            L K     + ++      L   EE    + + K +  S   EL  
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 25/146 (17%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
            L++ L + +   + LE    +   E     E +A+ +  I +   ++   ++EL +   +
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103

Query: 103  ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
                    ++   ++ +   K+I  L+      Q++ E+ +A   +AEK+  DLS +LE 
Sbjct: 1104 --------LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155

Query: 163  LQKINDEQKSKIRKTERALKVAEEEM 188
            L+   ++        +       ++ 
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 27/168 (16%), Positives = 70/168 (41%), Gaps = 6/168 (3%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ-- 100
               ++ +++  I  +E   ++ T+E K  +E V+     + ++ E+  +L K  +  +  
Sbjct: 981  ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040

Query: 101  ----KKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156
                +       +   +      +LE +  +L ++  + Q +   L+A+  + E+++   
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 157  SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
             A+LE      +    KIR+ E  +   +E++   K       K+  +
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 22/168 (13%), Positives = 61/168 (36%), Gaps = 6/168 (3%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ-- 100
            L   L + + K ++L    ++    +   +  + ++EK+ Q+  +    L+ E S L   
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

Query: 101  ----KKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156
                + +      Q+ K          ++++   +     K+   LE+   + ++ +   
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135

Query: 157  SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
             A   K +K   +   ++   +  L+   +     +    S  K+  +
Sbjct: 1136 KAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 31/162 (19%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102
             +    +L+ +  + +  I +   ++   ++   +  K  +   ER+  L   L+  ++K
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026

Query: 103  ETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162
               N  +  +K  +   ELE ++   +K  ++ +K K  L       E + SDL  ++ +
Sbjct: 1027 AK-NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL-------EGESSDLHEQIAE 1078

Query: 163  LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
            LQ    E K+++ K E  L+ A   +     +  +  K++ E
Sbjct: 1079 LQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 3e-07
 Identities = 48/290 (16%), Positives = 86/290 (29%), Gaps = 85/290 (29%)

Query: 40  SSPLKIELDQLKSKIRSLESHIDEKTQELKGK---------DEV---------------- 74
           SS +K+ +  +++++R L          LK K           V                
Sbjct: 220 SSNIKLRIHSIQAELRRL----------LKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 75  VAQKEKAIQD----KSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKK 130
           +  + K + D     +   +SL     +L   E                 L  +  + + 
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--------------SLLLKYLDCRP 315

Query: 131 ESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190
           +   ++         +I AE  I D  A  +  + +N ++ + I   E +L V E    R
Sbjct: 316 QDLPREVLTTNPRRLSIIAE-SIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYR 372

Query: 191 AKFEATSRSKELTEVHSAWLPP------WLA---------VHLLQCQSLIETHWNAHGKP 235
             F+  S         SA +P       W           V+ L   SL+E         
Sbjct: 373 KMFDRLSVFPP-----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 236 AMDVAIQKALEKKAQAGKWVQPH---VETIKAVSSFSYS--SIPEILKYI 280
              +     LE K +       H   V+      +F       P + +Y 
Sbjct: 428 IPSI----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 16/76 (21%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK-LQKINDEQKSKI 174
           A+AD L ++ ++++K  E+Q+K    L+     ++    +   K +K L++ N  Q  ++
Sbjct: 75  AQADRLTQEPESIRKWREEQRKR---LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131

Query: 175 RKTERALKVAEEEMMR 190
            K +   ++A++   +
Sbjct: 132 EKNKINNRIADKAFYQ 147

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 45.9 bits (108), Expect = 6e-06
 Identities = 36/160 (22%), Positives = 80/160 (50%), Gaps = 1/160 (0%)

Query: 43  LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK- 101
            + +LD+  +   +    I    +E       V++ E+ +QD + +I S+QK++S ++  
Sbjct: 30  KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSE 89

Query: 102 KETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161
           +E  +   + D A  R+++  ++I+NL+ E +++ +++E L+   +E EK   +L + +E
Sbjct: 90  RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149

Query: 162 KLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKE 201
              K   E +  I K +  L    E  + + +E   R  +
Sbjct: 150 NEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWAK 189

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 23/154 (14%), Positives = 72/154 (46%), Gaps = 3/154 (1%)

Query: 53  KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVD 112
           +I  L+  ID     ++ K + + +     + K++ I++L++E  +L K +     + + 
Sbjct: 12  EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLAL-KLQVSKNEQTLQ 70

Query: 113 KAHARADELEKQIDNLK--KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQ 170
             +A+   ++K++  +K  +E      E++  + R+ +A ++I +L  ++++  +  ++ 
Sbjct: 71  DTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDL 130

Query: 171 KSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204
           K ++ + E+     E  +           + + +
Sbjct: 131 KKEMLELEKLALELESLVENEVKNIKETQQIIFK 164

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 30/162 (18%), Positives = 64/162 (39%), Gaps = 7/162 (4%)

Query: 54  IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDK 113
           ++S+E         L+   ++  +     Q+ + +  + + E  +  + E     +Q + 
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699

Query: 114 AHARADELEKQIDNLKKESEKQQKE--KEALEARAIEAEKKISDLSAKLEKLQKINDEQK 171
             AR + LE +  ++  ES    K   +   EA  IE E  +     K + L    + + 
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAEL 759

Query: 172 SKIRKT-----ERALKVAEEEMMRAKFEATSRSKELTEVHSA 208
            +++K        A    E E+ +A+  A   +K+  E+  A
Sbjct: 760 ERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEA 801

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 16/137 (11%)

Query: 43   LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE------- 95
               ELD    +       + +  Q  + K +   + +  +  +++ I   + +       
Sbjct: 1946 KNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEK 2005

Query: 96   -LSSLQKKETLNAAEQVDKAHARAD--------ELEKQIDNLKKESEKQQKEKEALEARA 146
               +   +E +   E                   LEK I   K+E     +E E ++  +
Sbjct: 2006 AEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065

Query: 147  IEAEKKISDLSAKLEKL 163
             + + K+    A L+ L
Sbjct: 2066 SKVKNKVDRSIALLDNL 2082

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 27/169 (15%), Positives = 67/169 (39%), Gaps = 15/169 (8%)

Query: 47   LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK----- 101
            LD +   +  +     EK  +L+ +   +    K ++D   ++  LQ  L+   +     
Sbjct: 1898 LDFINQVVLLIN----EKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVK 1953

Query: 102  -KETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA---IEAEKKISDLS 157
             ++     +Q+ +    A+  +K    L+ + + + KE    + +A   +E  +    L 
Sbjct: 1954 NEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLR 2013

Query: 158  AKLEKLQKINDEQKSKIRKTERALKVAEE--EMMRAKFEATSRSKELTE 204
             ++E+L+   +E K K  +    +   E+     + ++    R  E  +
Sbjct: 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK 2062

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 16/156 (10%), Positives = 57/156 (36%), Gaps = 8/156 (5%)

Query: 46  ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK--EKAIQDKSERIVSLQKELSSLQKKE 103
           ++D      +     ++ +   +K K+ +V Q   E+        +  + +E+S   + +
Sbjct: 120 KIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYK 179

Query: 104 TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163
                E++ +   +  +   +    ++    + K  ++     +    + S       + 
Sbjct: 180 KEY--EELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRF 237

Query: 164 QKINDEQKSKIRKTERALKVAEEEM---MRAKFEAT 196
           + I + +  +++  E+ +     ++    +  FE T
Sbjct: 238 EVI-NNETEQLKAEEKKILNQFLKIKKKRKELFEKT 272

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 32/173 (18%), Positives = 72/173 (41%), Gaps = 36/173 (20%)

Query: 38  VDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97
           ++S+P   E+D L+ K   LE  I+   + LK        KEK    + ER+ +++ E++
Sbjct: 396 LESAP--EEIDALERKKLQLE--IER--EALK--------KEKDPDSQ-ERLKAIEAEIA 440

Query: 98  SLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157
            L ++                 +L  + +  ++   K ++ +  L+    E E       
Sbjct: 441 KLTEE---------------IAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ-- 483

Query: 158 AKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS-RSKELTEVHSAW 209
             L +  ++   +  ++ K E  ++   E++  A+F       +++ E+ S W
Sbjct: 484 YDLNRAAEL---RYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRW 533

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.43
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.31
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.26
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.94
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	97.29
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.24
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.21
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.12
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.94
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.59
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.47
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.26
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.23
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.22
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	96.1
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.02
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.79
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.75
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	95.61
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	95.35
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.21
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	95.16
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	94.94
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	94.86
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	94.78
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.77
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	94.62
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.23
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	94.21
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	94.05
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.63
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	93.58
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	92.97
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	91.88
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	91.5
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	91.48
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	91.08
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	90.92
1jcd_A	52	Major outer membrane lipoprotein; protein folding,	90.76
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	90.37
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	90.0
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	89.97
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	89.35
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	89.14
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	88.75
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	88.2
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	88.04
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	87.68
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	87.25
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	86.93
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	85.48
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	84.94
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	84.67
3htk_A	60	Structural maintenance of chromosomes protein 5; S	84.49
1zxa_A	67	CGMP-dependent protein kinase 1, alpha isozyme; pa	83.26
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	82.14
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	81.88
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	80.53
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	80.11

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.43  E-value=0.00024  Score=64.10  Aligned_cols=17  Identities=6%  Similarity=-0.071  Sum_probs=10.3

Q ss_pred             ccCCchhHHHHHHHHHH
Q 023185          207 SAWLPPWLAVHLLQCQS  223 (286)
Q Consensus       207 g~~l~Pwla~~~~~~~~  223 (286)
                      ..-+||-|-..|.++..
T Consensus       170 ~~~i~~~lL~~Yerir~  186 (256)
T 3na7_A          170 VEKTEPKIYSFYERIRR  186 (256)
T ss_dssp             HHTSCHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHH
Confidence            33556666666666554

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.31  E-value=0.00093  Score=57.48  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhH
Q 023185           46 ELDQLKSKIRSLESHIDEKTQELKGK   71 (286)
Q Consensus        46 el~elk~ki~eLes~i~e~~~eL~~~   71 (286)
                      ++..++..+..+...++.+..++..+
T Consensus         7 ~~~~l~~~~~~~~~~~~~l~~~l~~l   32 (284)
T 1c1g_A            7 KMQMLKLDKENALDRADEAEADKKAA   32 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.26  E-value=0.0014  Score=56.39  Aligned_cols=7  Identities=0%  Similarity=-0.045  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 023185           51 KSKIRSL   57 (286)
Q Consensus        51 k~ki~eL   57 (286)
                      ...+..+
T Consensus        19 ~~~~~~l   25 (284)
T 1c1g_A           19 LDRADEA   25 (284)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.94  E-value=0.0021  Score=57.81  Aligned_cols=54  Identities=9%  Similarity=0.178  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK  101 (286)
Q Consensus        48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk  101 (286)
                      ..+...+..++..+..+...+..+...+..++..+..++.+|..+...|...+.
T Consensus        28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~   81 (256)
T 3na7_A           28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK   81 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444444444433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=97.29  E-value=0.01  Score=63.66  Aligned_cols=131  Identities=24%  Similarity=0.274  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ  124 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~  124 (286)
                      ....++..++.+|+..+++..++...+...+...+   .....++..|+.+++.++..     +.+...++.++..|+++
T Consensus       921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~-----~~e~~~~~~~v~~L~~e  992 (1080)
T 2dfs_A          921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMS-----EEEAKNATNRVLSLQEE  992 (1080)
T ss_dssp             ------------------------------CHHHH---HHHHHHHHHHHHTHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence            33455555555555555554444444444444333   23445566666666655432     23444555788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE  186 (286)
Q Consensus       125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Ee  186 (286)
                      ++.+..++.....++..++.+...+.   .+++.++..|++.+...+.++++++..+...++
T Consensus       993 ~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A          993 IAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888877777777665554   356677777777777777777777755544443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.24  E-value=0.00084  Score=72.36  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=24.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE   87 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~   87 (286)
                      +-..++.++.+++.++..++..+.++..++..+..++..++..+.....
T Consensus       858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~  906 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETE  906 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555554444444444433333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.21  E-value=0.0016  Score=70.28  Aligned_cols=53  Identities=11%  Similarity=0.095  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL   96 (286)
Q Consensus        44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI   96 (286)
                      ..++.+++.++..++..+..+...+..+...+..++.++.....++......+
T Consensus       856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l  908 (1184)
T 1i84_S          856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY  908 (1184)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555566665555555555555555555555555555554444444433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.12  E-value=0.11  Score=44.93  Aligned_cols=118  Identities=14%  Similarity=0.168  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL---NAAEQVDKAHARADEL  121 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~---~~~eqi~ka~~Ri~eL  121 (286)
                      +++.+++....+......++..   .++..|.++++.+..+...+..|..++++.+.++..   .....+...+..+..|
T Consensus        24 q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l  100 (189)
T 2v71_A           24 QSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT  100 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444443   346778888888888888888888888888766611   1112233333344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK  165 (286)
Q Consensus       122 ek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek  165 (286)
                      ....+.++..+..+......|+...+.....+..+..+++..-.
T Consensus       101 ~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiE  144 (189)
T 2v71_A          101 RAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIE  144 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.94  E-value=0.14  Score=60.45  Aligned_cols=30  Identities=13%  Similarity=-0.026  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHHHHhhhhhhhCcchhHHHHH
Q 023185          213 WLAVHLLQCQSLIETHWNAHGKPAMDVAIQ  242 (286)
Q Consensus       213 wla~~~~~~~~~~~~~w~~hg~p~~~~~~~  242 (286)
                      -|+.+..|+.+....+-.....-+-+.++-
T Consensus      2081 gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLa 2110 (3245)
T 3vkg_A         2081 NLNSERGRWEQQSENFNTQMSTVVGDVVLA 2110 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccHHHHHHHHHHHHHhccHHHHHH
Confidence            367777777666666555544444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.59  E-value=0.22  Score=40.28  Aligned_cols=111  Identities=23%  Similarity=0.293  Sum_probs=54.1

Q ss_pred             hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEK  139 (286)
Q Consensus        60 ~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk  139 (286)
                      .+.....++..+...+...+....++......|..+.+.++..+        ..-...+.+.+.....|......+..+.
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL--------~~E~~~l~e~EE~~~~L~~~k~eLe~~l   85 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQV--------QAEQDNLADAEERCDQLIKNKIQLEAKV   85 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555555555555555555555555555554322        1111222233333444444444444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE  178 (286)
Q Consensus       140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE  178 (286)
                      ..+..+..+.+.....+......++....+.+.+|+.++
T Consensus        86 ~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           86 KEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555555544

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.54  E-value=0.16  Score=39.43  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS   97 (286)
Q Consensus        47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~   97 (286)
                      ++-++.++..|+...+............+..++........+|.+|+..|.
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~   54 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR   54 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            444555555555555555444444444444444444444444444443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.47  E-value=0.14  Score=50.28  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       156 l~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      ++.....++...++++..+.++.++...+..++.++
T Consensus       542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.26  E-value=0.58  Score=55.34  Aligned_cols=34  Identities=21%  Similarity=0.482  Sum_probs=22.4

Q ss_pred             hhhhhhhCcchhHHHHHHHH------------HhHHhhhhhchhhH
Q 023185          226 ETHWNAHGKPAMDVAIQKAL------------EKKAQAGKWVQPHV  259 (286)
Q Consensus       226 ~~~w~~hg~p~~~~~~~~~~------------~~~~~~~~~~~ph~  259 (286)
                      ...|+.+|=|.=+--++-|.            .+..||-+|.+-+-
T Consensus      2159 i~~W~~~GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~ 2204 (3245)
T 3vkg_A         2159 RLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQY 2204 (3245)
T ss_dssp             HHHHHHTTCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHT
T ss_pred             HHHHHhCCCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHh
Confidence            45788888886444444333            24578999988664

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.23  E-value=0.47  Score=40.26  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL  156 (286)
Q Consensus       116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el  156 (286)
                      .++.+|+.-|..|..+++..+.....++...+.+..++..+
T Consensus        90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l  130 (168)
T 3o0z_A           90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS  130 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.22  E-value=0.29  Score=52.43  Aligned_cols=27  Identities=19%  Similarity=0.236  Sum_probs=0.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhh
Q 023185           42 PLKIELDQLKSKIRSLESHIDEKTQEL   68 (286)
Q Consensus        42 ~l~~el~elk~ki~eLes~i~e~~~eL   68 (286)
                      .++.++.+++.++.+.+.....+..++
T Consensus       925 ~LE~kl~eLq~rL~~~e~~n~~L~~~~  951 (1080)
T 2dfs_A          925 GLENKIMQLQRKIDEQNKEYKSLLEKM  951 (1080)
T ss_dssp             --------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666655555554444444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=96.10  E-value=0.33  Score=37.57  Aligned_cols=53  Identities=19%  Similarity=0.249  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      ++-++.++..|+...+........+...+..++........+|.+|+..|..+
T Consensus         4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l   56 (101)
T 3u59_A            4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT   56 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            44455555555555555554444444444444444444444444444444333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.02  E-value=0.66  Score=40.10  Aligned_cols=55  Identities=15%  Similarity=0.122  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      ......++..+..+++...++-...-+.++.++   ++.|...+..+..|++.+..+.
T Consensus        15 wk~~~~~~~q~~~~le~El~EFqesSrELE~EL---E~eL~~~Ek~~~~L~~~~~~L~   69 (189)
T 2v71_A           15 WKELSMKYKQSFQEARDELVEFQEGSRELEAEL---EAQLVQAEQRNRDLQADNQRLK   69 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            345555556666666666555555555554433   3555566666666666665555

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.79  E-value=0.48  Score=36.71  Aligned_cols=61  Identities=13%  Similarity=0.164  Sum_probs=43.4

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK  101 (286)
Q Consensus        41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk  101 (286)
                      +++...+..++..........+....+++.......+++.++..++..|..++.+++.++.
T Consensus         5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee   65 (101)
T 3u1c_A            5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE   65 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777777777777777777777777777777777777777776653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.75  E-value=0.18  Score=49.33  Aligned_cols=73  Identities=11%  Similarity=0.061  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023185          126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR  198 (286)
Q Consensus       126 e~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~  198 (286)
                      +.+++....+..+.+.++.+.........+.+...+.+++...+.+..++...+....+.++......+.+..
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444555555555555555555555555555555555555555555555555544444333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=95.61  E-value=0.4  Score=38.73  Aligned_cols=95  Identities=17%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ  124 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~  124 (286)
                      .++.+++.....-...+.....+|.++...|..++.+|..+......|+..|..++...    ..++..++..+..|+..
T Consensus        17 ~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~----~~~l~~~q~~i~~lE~e   92 (131)
T 3tnu_A           17 TKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY----CMQLAQIQEMIGSVEEQ   92 (131)
T ss_dssp             ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333444444444444444444444444555554444222    12333444555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 023185          125 IDNLKKESEKQQKEKEALE  143 (286)
Q Consensus       125 Ie~Lk~eie~~~~kk~eLE  143 (286)
                      +..++.+...+..+-..|-
T Consensus        93 L~~~r~em~~ql~EYq~Ll  111 (131)
T 3tnu_A           93 LAQLRCEMEQQNQEYKILL  111 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555533333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=95.35  E-value=0.43  Score=38.38  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 023185          113 KAHARADELEKQIDNLKKESEKQ  135 (286)
Q Consensus       113 ka~~Ri~eLek~Ie~Lk~eie~~  135 (286)
                      .++..+..|+..+..++.+...+
T Consensus        79 ~~q~~i~~lE~eL~~~r~e~~~q  101 (129)
T 3tnu_B           79 DARNKLAELEEALQKAKQDMARL  101 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHH
Confidence            33445555555555555555544

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.21  E-value=1.2  Score=37.68  Aligned_cols=49  Identities=20%  Similarity=0.321  Sum_probs=22.7

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        52 ~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      .++..|+.++.+++..++.=-+.-..+.+...+.+..+..++..+..++
T Consensus         6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq   54 (168)
T 3o0z_A            6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQ   54 (168)
T ss_dssp             ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555444444444555555555555554444444

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=95.16  E-value=0.4  Score=35.62  Aligned_cols=58  Identities=16%  Similarity=0.220  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      +...+..++..........+....+++.......+.+.++..+...|..++.+++.++
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e   61 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS   61 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444444444444444444444444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=94.94  E-value=0.97  Score=35.01  Aligned_cols=61  Identities=23%  Similarity=0.324  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      +.++++.++.++..|+++.+.+..++..+...+..-...-...+.....++.+++.+...+
T Consensus         3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL   63 (97)
T 2eqb_B            3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   63 (97)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888899999999988888888888888888888888888888888888888887666

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=94.86  E-value=1.5  Score=36.72  Aligned_cols=116  Identities=18%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA  149 (286)
Q Consensus        71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~  149 (286)
                      +...+...+........+|..|+.++..+-..+ ++....  .++..|-       +.+..++.....+..+.+.++..+
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~se--ekasqrE-------d~yEeqIk~L~~kLKEAE~RAE~A   96 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQA--EKYSQKE-------DKYEEEIKVLSDKLKEAETRAEFA   96 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh--hHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555443333 222111  2222343       444555555555566678888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185          150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA  195 (286)
Q Consensus       150 e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea  195 (286)
                      +..+..++..++.+++.....+..+..+...+..+-..+..+...-
T Consensus        97 ERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~  142 (155)
T 2efr_A           97 ERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKN  142 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            8888888888888888888888888888888887777776654433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=94.78  E-value=0.38  Score=35.69  Aligned_cols=53  Identities=19%  Similarity=0.291  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      +.++.++..|+...+............+...+........+|..|+..|..++
T Consensus         2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE   54 (81)
T 1ic2_A            2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE   54 (81)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34667777777777777666666666666666666666666666666665555

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.77  E-value=1.1  Score=34.62  Aligned_cols=60  Identities=13%  Similarity=0.198  Sum_probs=41.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      +++...+..++..........+....+++.......+++..+..++..|..++.+++.++
T Consensus         5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~   64 (101)
T 3u59_A            5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS   64 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666666777766666666666666677777777777777777777777777766665

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=94.62  E-value=0.1  Score=38.37  Aligned_cols=47  Identities=32%  Similarity=0.519  Sum_probs=41.0

Q ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        54 i~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      +.+|+..+.....+|..+|..|..+++.|.++...|..|+++++..+
T Consensus        21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr   67 (72)
T 3nmd_A           21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR   67 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            67777778788888899999999999999999999999999988764

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=94.21  E-value=2.1  Score=35.76  Aligned_cols=21  Identities=14%  Similarity=0.417  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 023185          114 AHARADELEKQIDNLKKESEK  134 (286)
Q Consensus       114 a~~Ri~eLek~Ie~Lk~eie~  134 (286)
                      +..++.+|+..+...-+.+..
T Consensus        40 aE~k~~eLEeeL~~v~~nlKs   60 (155)
T 2efr_A           40 SEGKSAELEEELKTVTNNLKS   60 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcc
Confidence            334555555544444333333

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=94.05  E-value=0.23  Score=37.21  Aligned_cols=59  Identities=31%  Similarity=0.354  Sum_probs=53.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS   97 (286)
Q Consensus        39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~   97 (286)
                      ++..+-+++++++-++.+++++.-.....|++-.++|..++..+..+..+|.-|++++.
T Consensus        20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~   78 (81)
T 3qh9_A           20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            55678899999999999999999999999999999999999999999999988888764

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.63  E-value=0.47  Score=38.91  Aligned_cols=56  Identities=21%  Similarity=0.242  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ  100 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q  100 (286)
                      .+.+.+..++..+..++..+..++.+.+.+++.+.+++.++..++..|+.++..++
T Consensus        75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444443

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=93.58  E-value=1.9  Score=33.16  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=16.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK  101 (286)
Q Consensus        69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk  101 (286)
                      ..+...|..+...+..+..+|..+...+..+..
T Consensus        13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~   45 (112)
T 1l8d_A           13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKK   45 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            334444444444444555555555555555543

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=92.97  E-value=2  Score=33.89  Aligned_cols=18  Identities=17%  Similarity=0.444  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHhhHHH
Q 023185           46 ELDQLKSKIRSLESHIDE   63 (286)
Q Consensus        46 el~elk~ki~eLes~i~e   63 (286)
                      +++.++.++...+..+..
T Consensus        25 ei~~L~~~L~~AEeaL~~   42 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVA   42 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455555554444444433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.88  E-value=4.1  Score=32.63  Aligned_cols=25  Identities=8%  Similarity=0.259  Sum_probs=0.4

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHH
Q 023185           52 SKIRSLESHIDEKTQELKGKDEVVA   76 (286)
Q Consensus        52 ~ki~eLes~i~e~~~eL~~~d~~I~   76 (286)
                      .|+.++......-...+.....+|.
T Consensus        17 ~K~eel~~~~~~~~~~l~~~k~Ei~   41 (131)
T 3tnu_A           17 TKTEELNREVATNSELVQSGKSEIS   41 (131)
T ss_dssp             ------------------------C
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4444444444433333333333333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=91.50  E-value=5.9  Score=38.59  Aligned_cols=15  Identities=27%  Similarity=0.399  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 023185          154 SDLSAKLEKLQKIND  168 (286)
Q Consensus       154 ~el~~k~~~Lek~~~  168 (286)
                      ..+..++..|+..+.
T Consensus       178 ~~l~~ki~~l~~~~~  192 (464)
T 1m1j_B          178 DSLHKKIQKLENAIA  192 (464)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=91.48  E-value=3.7  Score=40.53  Aligned_cols=38  Identities=16%  Similarity=0.245  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS  157 (286)
Q Consensus       120 eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~  157 (286)
                      +|++.|..|+..+..+-..+..|+.-.+++..++..|+
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE  151 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE  151 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666665554444444444444443333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=90.92  E-value=3.8  Score=30.70  Aligned_cols=52  Identities=13%  Similarity=0.182  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      .+++.+|..+......+.-+++.....++.......+=-..-..++++|..+
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L   54 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF   54 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444333333333333444444444

>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A

Probab=90.76  E-value=1.5  Score=30.14  Aligned_cols=13  Identities=38%  Similarity=0.598  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHH
Q 023185          107 AAEQVDKAHARAD  119 (286)
Q Consensus       107 ~~eqi~ka~~Ri~  119 (286)
                      +..+...|+.|++
T Consensus        37 ak~eA~RAN~RlD   49 (52)
T 1jcd_A           37 AKDDAARANQRAD   49 (52)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh
Confidence            3466667777775

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=90.37  E-value=6.9  Score=32.52  Aligned_cols=61  Identities=26%  Similarity=0.292  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE  103 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl  103 (286)
                      +-+..+.....|..|++.......+|+.++..|....+.+..+.+++..|+-+.+.++.++
T Consensus        59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl  119 (152)
T 3a7p_A           59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL  119 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666777888888888888888888888888888877777777777777777776433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=90.00  E-value=4.3  Score=40.07  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV  183 (286)
Q Consensus       140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~  183 (286)
                      .+|+.+...++.++...-+.+..|+..+.+|-.+|++||-++..
T Consensus       113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi  156 (562)
T 3ghg_A          113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI  156 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666677778888888888888888877654

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=89.97  E-value=13  Score=35.24  Aligned_cols=72  Identities=17%  Similarity=0.170  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      ..+.|+++|+++++-.-+.+.+-...   -..+......+..++.+-++.+.|++..|..+++.++.+..++.++
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (471)
T 3mq9_A          398 VTHLLQQELTEAQKGFQDVEAQAATA---NHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL  469 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33345555555555444443222111   1122334444444444444455555555555555555555555443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=89.35  E-value=6.7  Score=30.88  Aligned_cols=31  Identities=26%  Similarity=0.268  Sum_probs=14.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      +.+...+..++..+..+..+|+.+..+|...
T Consensus        27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~   57 (110)
T 2v4h_A           27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQH   57 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444445555555444443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=89.14  E-value=4.2  Score=31.20  Aligned_cols=63  Identities=24%  Similarity=0.256  Sum_probs=31.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEAL  142 (286)
Q Consensus        68 L~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eL  142 (286)
                      +..+...+..++.-+..++..|+.|..+|...+..+            .+|..|+-+++-++.+-..-+...+.+
T Consensus         4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~------------E~i~vLk~Qv~IY~~DF~aERadREkl   66 (94)
T 3jsv_C            4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM------------ETVPVLKAQADIYKADFQAERHAREKL   66 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555666666655555444222            355555555555555444443333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=88.75  E-value=7.5  Score=30.66  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAE  150 (286)
Q Consensus       116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e  150 (286)
                      .++|+|+-.=++|...-.....-...++.+.+.+.
T Consensus        56 ~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai   90 (111)
T 2v66_B           56 KYVRELEQANDDLERAKRATIVSLEDFEQRLNQAI   90 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35555554444444444444333344444444433

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.20  E-value=2  Score=35.15  Aligned_cols=28  Identities=11%  Similarity=0.328  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           72 DEVVAQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        72 d~~I~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      ...++++.+.+.....++..|...+..-
T Consensus        31 ~~~l~~l~~~l~~~~~e~~~L~~~l~eE   58 (135)
T 2e7s_A           31 KEDYNTLKRELSDRDDEVKRLREDIAKE   58 (135)
T ss_dssp             HHHHHHHHHHTTTHHHHHHTHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3345555555555555555555555444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.04  E-value=11  Score=31.49  Aligned_cols=22  Identities=32%  Similarity=0.290  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          125 IDNLKKESEKQQKEKEALEARAIEA  149 (286)
Q Consensus       125 Ie~Lk~eie~~~~kk~eLEa~~~e~  149 (286)
                      ...+..+++.+   ...|-..++.+
T Consensus        81 ~~~ie~ElEeL---TasLFeEAN~M  102 (154)
T 2ocy_A           81 ADKLNKEVEDL---TASLFDEANNM  102 (154)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHH
Confidence            33344444444   44455555444

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=87.68  E-value=22  Score=34.79  Aligned_cols=99  Identities=19%  Similarity=0.206  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           86 SERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK  165 (286)
Q Consensus        86 ~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek  165 (286)
                      +.+++.-|.++.+.|+.. .+++..   -++.+.+.+..=..++++.+.++++-+..   ...-+..+...+..++..++
T Consensus         8 q~~la~yq~elarvqkan-a~aka~---Ye~~~ae~~a~n~~i~aeNeaikkrNa~a---ka~Ye~~l~kY~~dlakY~~   80 (497)
T 3iox_A            8 QAKLTAYQTELARVQKAN-ADAKAA---YEAAVAANNAANAALTAENTAIKKRNADA---KADYEAKLAKYQADLAKYQK   80 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666544 111110   11233333333334444444443333222   12223345556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          166 INDEQKSKIRKTERALKVAEEEMMRA  191 (286)
Q Consensus       166 ~~~Eqk~~i~~lE~~lq~~Eeei~kl  191 (286)
                      ..++++..+...+..+......+.++
T Consensus        81 ~~AeY~~kl~aYe~~~~~~~k~lae~  106 (497)
T 3iox_A           81 DLADYPVKLKAYEDEQTSIKAALAEL  106 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666555555544

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=87.25  E-value=2.1  Score=31.65  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK  192 (286)
Q Consensus       140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle  192 (286)
                      ..++.|..+++.+++-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..+.
T Consensus        10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46788888888889999999999999999999999999988877766665543

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=86.93  E-value=12  Score=30.82  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=7.8

Q ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHH
Q 023185           56 SLESHIDEKTQELKGKDEVVAQKEK   80 (286)
Q Consensus        56 eLes~i~e~~~eL~~~d~~I~q~e~   80 (286)
                      -++...+.....+......+..+++
T Consensus         7 llEeeLer~eerl~~a~~kLeeaek   31 (147)
T 2b9c_A            7 LVEEELDRAQERLATALQKLEEAEK   31 (147)
T ss_dssp             ----CCGGGGTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=85.48  E-value=13  Score=30.12  Aligned_cols=11  Identities=18%  Similarity=0.407  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q 023185           48 DQLKSKIRSLE   58 (286)
Q Consensus        48 ~elk~ki~eLe   58 (286)
                      ..+..++.++.
T Consensus        35 ~~vd~km~ei~   45 (138)
T 3hnw_A           35 SYINNKITEFN   45 (138)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            33344443333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=84.94  E-value=16  Score=30.40  Aligned_cols=59  Identities=24%  Similarity=0.241  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK  101 (286)
Q Consensus        43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk  101 (286)
                      ..+.+..++..+..++..+.....++..+...+..+..++..+.-+.+.++.++..++.
T Consensus        66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~  124 (152)
T 3a7p_A           66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK  124 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555543

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.67  E-value=16  Score=30.36  Aligned_cols=46  Identities=4%  Similarity=0.033  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185          152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS  197 (286)
Q Consensus       152 k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~  197 (286)
                      ...++|.-+..........+.....++..+...+..+..++.+...
T Consensus        95 LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~  140 (154)
T 2ocy_A           95 LFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKN  140 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555556666655555555544443

>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=84.49  E-value=5.7  Score=27.18  Aligned_cols=54  Identities=11%  Similarity=0.164  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS   98 (286)
Q Consensus        45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~   98 (286)
                      ..+..+...+.......+.....+......+++....++.....|..++.+|..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~   58 (60)
T 3htk_A            5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455666666666666666666666666666666666666666666666666543

>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}

Probab=83.26  E-value=1.8  Score=31.33  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=31.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK  101 (286)
Q Consensus        61 i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk  101 (286)
                      .++..+.|+.++..|.+++..++.+...|..|.++++..+.
T Consensus        13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs   53 (67)
T 1zxa_A           13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS   53 (67)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677888999999999999999999999999888763

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=82.14  E-value=17  Score=28.66  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK  162 (286)
Q Consensus       127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~  162 (286)
                      .++..+..+......||-..+.....+..+++++..
T Consensus        53 ~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~   88 (111)
T 2v66_B           53 QLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ   88 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence            344444444444444554444444455555554443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=81.88  E-value=35  Score=32.13  Aligned_cols=16  Identities=38%  Similarity=0.221  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHhh
Q 023185           88 RIVSLQKELSSLQKKE  103 (286)
Q Consensus        88 eI~~Lq~eI~~~qkkl  103 (286)
                      --..||.+|+++|+.+
T Consensus       398 ~~~~~~~~~~~~~~~~  413 (471)
T 3mq9_A          398 VTHLLQQELTEAQKGF  413 (471)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhH
Confidence            3344566666665444

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=80.53  E-value=6  Score=28.90  Aligned_cols=28  Identities=14%  Similarity=0.156  Sum_probs=10.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           69 KGKDEVVAQKEKAIQDKSERIVSLQKEL   96 (286)
Q Consensus        69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI   96 (286)
                      ..++++|.+.+..|.+++..|.....+|
T Consensus        29 ~~K~eELr~kd~~I~eLEk~L~ekd~eI   56 (72)
T 3nmd_A           29 QEKIEELRQRDALIDELELELDQKDELI   56 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=80.11  E-value=41  Score=31.80  Aligned_cols=56  Identities=14%  Similarity=0.033  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE  194 (286)
Q Consensus       139 k~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~E  194 (286)
                      ..+++..+..+....+......+.+.+..+.++..+.++...+..+.+.+..+...
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (487)
T 3oja_A          423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR  478 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence            44445555555555555555666666666666666666666666665555554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	90.92
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	88.38
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	84.45
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	83.41
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	83.15

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.92  E-value=1.8  Score=32.37  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185          116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEA  149 (286)
Q Consensus       116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~  149 (286)
                      .|++.+++.++.+..++...+.....++....++
T Consensus        95 ~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l  128 (133)
T d1fxkc_          95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEEL  128 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777777777777777766665555554443

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.38  E-value=3.4  Score=29.95  Aligned_cols=24  Identities=13%  Similarity=0.127  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 023185           76 AQKEKAIQDKSERIVSLQKELSSL   99 (286)
Q Consensus        76 ~q~e~~i~e~~~eI~~Lq~eI~~~   99 (286)
                      ..++..+..+..++..+..++..+
T Consensus        11 q~lq~el~~~~~q~~~le~q~~E~   34 (107)
T d1fxka_          11 QQLQQQAQAISVQKQTVEMQINET   34 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444333

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.45  E-value=6.2  Score=29.17  Aligned_cols=11  Identities=9%  Similarity=0.441  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 023185          125 IDNLKKESEKQ  135 (286)
Q Consensus       125 Ie~Lk~eie~~  135 (286)
                      ++-+.+.++.+
T Consensus        90 ~~~l~~ri~~l  100 (133)
T d1fxkc_          90 MESIKSQKNEL  100 (133)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=83.41  E-value=3.5  Score=29.87  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 023185          117 RADELEKQIDNLKKESEKQQK  137 (286)
Q Consensus       117 Ri~eLek~Ie~Lk~eie~~~~  137 (286)
                      +++.|...|..+..+......
T Consensus        72 ~~k~lk~~i~~le~~~~~~~~   92 (110)
T d1seta1          72 RGKALGEEAKRLEEALREKEA   92 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444433

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.15  E-value=6.5  Score=28.39  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhh
Q 023185           46 ELDQLKSKIRSLESHIDEKTQEL   68 (286)
Q Consensus        46 el~elk~ki~eLes~i~e~~~eL   68 (286)
                      .+.+...++..++........++
T Consensus        23 ~~~~~~~k~~~~e~~~~~~~~~~   45 (185)
T d2ap3a1          23 PIKTVGKKIAELDEKKKKLTEDV   45 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555544444333