Citrus Sinensis ID: 023191
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 286 | 2.2.26 [Sep-21-2011] | |||||||
| P50433 | 518 | Serine hydroxymethyltrans | N/A | no | 0.993 | 0.548 | 0.950 | 1e-164 | |
| P49357 | 517 | Serine hydroxymethyltrans | N/A | no | 0.993 | 0.549 | 0.943 | 1e-161 | |
| Q9SZJ5 | 517 | Serine hydroxymethyltrans | yes | no | 0.993 | 0.549 | 0.940 | 1e-161 | |
| P34899 | 518 | Serine hydroxymethyltrans | N/A | no | 0.989 | 0.546 | 0.929 | 1e-159 | |
| P49358 | 517 | Serine hydroxymethyltrans | N/A | no | 0.993 | 0.549 | 0.933 | 1e-158 | |
| Q10104 | 488 | Serine hydroxymethyltrans | yes | no | 0.923 | 0.540 | 0.693 | 1e-108 | |
| O13972 | 467 | Probable serine hydroxyme | no | no | 0.905 | 0.554 | 0.683 | 1e-107 | |
| O13426 | 470 | Serine hydroxymethyltrans | N/A | no | 0.902 | 0.548 | 0.679 | 1e-106 | |
| Q60V73 | 511 | Serine hydroxymethyltrans | N/A | no | 0.902 | 0.504 | 0.674 | 1e-106 | |
| O13425 | 493 | Serine hydroxymethyltrans | N/A | no | 0.891 | 0.517 | 0.686 | 1e-105 |
| >sp|P50433|GLYM_SOLTU Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 270/284 (95%), Positives = 281/284 (98%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLPNEAVY+KEK+GV WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV
Sbjct: 30 MSSLPNEAVYDKEKSGVAWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 89
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LS
Sbjct: 90 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLS 149
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NFQVYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTG
Sbjct: 150 GSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTG 209
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY+RIRKVCNKQKAI+LADMAHISGLVAAG
Sbjct: 210 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAG 269
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPF+YADVVTTTTHKSLRGPRGAMIF+RKGVKE+NKQGKEV
Sbjct: 270 VIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKEV 313
|
Interconversion of serine and glycine. Solanum tuberosum (taxid: 4113) EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1 |
| >sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1 | Back alignment and function description |
|---|
Score = 568 bits (1464), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/284 (94%), Positives = 277/284 (97%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLP+EAVYEKE+ GVTWPKQLNAPLEVVDPEIADIIE EKARQWKGLELIPSENFTS+
Sbjct: 30 MSSLPSEAVYEKERPGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSL 89
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LS
Sbjct: 90 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLS 149
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NF VYTALLK HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG
Sbjct: 150 GSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 209
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAIMLADMAHISGLVAAG
Sbjct: 210 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAG 269
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEV
Sbjct: 270 VIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEV 313
|
Interconversion of serine and glycine. Flaveria pringlei (taxid: 4226) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 567 bits (1460), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/284 (94%), Positives = 277/284 (97%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLP+EAV EKE++ VTWPKQLNAPLE VDPEIADIIEHEKARQWKGLELIPSENFTSV
Sbjct: 29 MSSLPSEAVDEKERSRVTWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSV 88
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDPEKWGVNVQ LS
Sbjct: 89 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLS 148
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NF VYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTG
Sbjct: 149 GSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTG 208
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQ+EKSATLFRPKLIVAGASAYARLYDY RIRKVCNKQKA+MLADMAHISGLVAA
Sbjct: 209 YIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAN 268
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV
Sbjct: 269 VIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 312
|
Interconversion of serine and glycine. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 561 bits (1447), Expect = e-159, Method: Compositional matrix adjust.
Identities = 263/283 (92%), Positives = 276/283 (97%)
Query: 2 SSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVS 61
SSLP+EAVY+KE VTWPKQLN+PLEV+DPEIADIIE EKARQWKGLELIPSENFTS+S
Sbjct: 31 SSLPDEAVYDKENPRVTWPKQLNSPLEVIDPEIADIIELEKARQWKGLELIPSENFTSLS 90
Query: 62 VMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121
VMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LSG
Sbjct: 91 VMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSG 150
Query: 122 SPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY 181
SPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTGY
Sbjct: 151 SPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGY 210
Query: 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 241
IDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKA++LADMAHISGLVAAGV
Sbjct: 211 IDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGV 270
Query: 242 IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
IPSPF+YADVVTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEV
Sbjct: 271 IPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEV 313
|
Interconversion of serine and glycine. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1 | Back alignment and function description |
|---|
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 265/284 (93%), Positives = 274/284 (96%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLP+EAVYEKE+ GVTWPKQLNAPLEV DPEIADIIE EKARQWKGLELI SENFTS+
Sbjct: 30 MSSLPSEAVYEKERPGVTWPKQLNAPLEVGDPEIADIIELEKARQWKGLELILSENFTSL 89
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLD KWGVNVQ LS
Sbjct: 90 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLS 149
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NF VYTALLK HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG
Sbjct: 150 GSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 209
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAI+LADMAHISGLVAAG
Sbjct: 210 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAG 269
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKGVKE+NKQGKEV
Sbjct: 270 VIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKEV 313
|
Interconversion of serine and glycine. Flaveria pringlei (taxid: 4226) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|Q10104|GLYM_SCHPO Serine hydroxymethyltransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=shm2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/264 (69%), Positives = 212/264 (80%)
Query: 21 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPG 80
K L APL DP + I+E EK+RQ + + LI SENFTS +VM A+GS+M NKYSEGYPG
Sbjct: 28 KLLKAPLAECDPTVYKILESEKSRQKESIALIASENFTSRAVMDALGSIMQNKYSEGYPG 87
Query: 81 ARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIM 140
ARYYGGNE+ID AE LCQ RALEAF LD EKWGVNVQ SGSP+N Q Y A++KPHDR+M
Sbjct: 88 ARYYGGNEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLM 147
Query: 141 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200
LDLPHGGHLSHG+ T K ISAVS +F TMPY +N+ TG IDYD LEK+A FRPK+IV
Sbjct: 148 GLDLPHGGHLSHGFSTPQKAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIV 207
Query: 201 AGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL 260
AGASAYARL DY+R+RK+ A +L DMAHISGLVAAGVIPSPFEYAD+VTTTTHKSL
Sbjct: 208 AGASAYARLVDYKRMRKITEMCNAYLLCDMAHISGLVAAGVIPSPFEYADIVTTTTHKSL 267
Query: 261 RGPRGAMIFFRKGVKEINKQGKEV 284
RGPRGAMIF+RKG + +K+G +
Sbjct: 268 RGPRGAMIFYRKGTRSHDKRGNPI 291
|
Interconversion of serine and glycine. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|O13972|GLYD_SCHPO Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24C9.12c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 177/259 (68%), Positives = 214/259 (82%)
Query: 26 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYG 85
PL+ DP +A+I+ HE RQ + LI SENFTS +VM A+GSVM+NKYSEGYPGARYYG
Sbjct: 11 PLKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYG 70
Query: 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLP 145
GN++ID E+LCQ+RAL AF LDP KWGVNVQ LSGSP+N QVY A++ PH R+M LDLP
Sbjct: 71 GNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLP 130
Query: 146 HGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA 205
GGHLSHGYQTDTKKISAVS +FE+MPYR++ +TG IDYD LE A LFRPK++VAG SA
Sbjct: 131 SGGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSA 190
Query: 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG 265
Y RL DY R+R++ + A ++ DMAHISGLV+AGVIPSPFEYADVVTTTTHKSLRGPRG
Sbjct: 191 YCRLIDYARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRG 250
Query: 266 AMIFFRKGVKEINKQGKEV 284
AMIFFR+G+++ +K+G +
Sbjct: 251 AMIFFRRGLRKHDKKGNPI 269
|
Interconversion of serine and glycine. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|O13426|GLYC_CANAL Serine hydroxymethyltransferase, cytosolic OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SHM2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/259 (67%), Positives = 217/259 (83%), Gaps = 1/259 (0%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
L+ DPE+ II+ E RQ + LI SENFT+ +V A+G+ M NKYSEGYPGARYYGG
Sbjct: 18 LKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYGG 77
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
NE+ID E LCQ+RAL+AF L P+KWGVNVQ+LSGSP+N QVY A++KPH+R+M LDLPH
Sbjct: 78 NEHIDRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPH 137
Query: 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 206
GGHLSHGYQTD++KISAVS +FETMPYR++ TG IDYD LEK+A L+RPK++VAG SAY
Sbjct: 138 GGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAY 197
Query: 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266
RL DY+R+R++ +K A ++ DMAHISGL+AAGVIPSPFEYAD+VTTTTHKSLRGPRGA
Sbjct: 198 CRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGA 257
Query: 267 MIFFRKGVKEIN-KQGKEV 284
MIFFR+GV+ +N K G+E+
Sbjct: 258 MIFFRRGVRSVNPKTGQEI 276
|
Interconversion of serine and glycine. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|Q60V73|GLYC_CAEBR Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 174/258 (67%), Positives = 215/258 (83%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
+E +DPE+ +I+++EK+RQ +GLELI SENFTS +VM A+GS M NKYSEGYPGARYYGG
Sbjct: 56 VEKIDPEVFNIMKNEKSRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGG 115
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
NE+ID E LCQKRALE F LDP KWGVNVQSLSGSP+NF VYTAL+ + RIM LDLP
Sbjct: 116 NEFIDQMEILCQKRALEVFGLDPAKWGVNVQSLSGSPANFAVYTALVGANGRIMGLDLPD 175
Query: 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 206
GGHL+HG+ T +K+SA S FF++MPY+++ +G IDYD+LE++A LFRPK+++AG S Y
Sbjct: 176 GGHLTHGFFTPARKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIAGVSCY 235
Query: 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266
AR DYER RK+ K A +++DMAHISGLVAAG+IPSPFEY+DVVTTTTHKSLRGPRGA
Sbjct: 236 ARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGA 295
Query: 267 MIFFRKGVKEINKQGKEV 284
MIF+RKGV+ +N +G E
Sbjct: 296 MIFYRKGVRSVNAKGVET 313
|
Interconversion of serine and glycine. Caenorhabditis briggsae (taxid: 6238) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
| >sp|O13425|GLYM_CANAX Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/255 (68%), Positives = 211/255 (82%)
Query: 30 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEY 89
VDPE+ADI+ E+ RQ + LIPSENFTS +VM +GS M NKYSEGYPG RYYGGNE
Sbjct: 42 VDPEMADILNQERTRQKNSITLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNEI 101
Query: 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGH 149
ID AE+LCQKRALEAF LDP +WGVNVQ LSG+P+N Y+A+L+ DRIM LDLPHGGH
Sbjct: 102 IDKAEALCQKRALEAFGLDPSQWGVNVQPLSGAPANLYAYSAILEVGDRIMGLDLPHGGH 161
Query: 150 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARL 209
LSHGYQT T KIS +S +F+TMPYRLNE TG IDYD LEK+A LFRPK+IVAGASAY+R+
Sbjct: 162 LSHGYQTKTTKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKVIVAGASAYSRV 221
Query: 210 YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF 269
DY+R+R++ + A +L+DMAHISGLV+A V SPF Y+D+VTTTTHKSLRGPRGAMIF
Sbjct: 222 IDYKRMRQLSIRLGAYLLSDMAHISGLVSAVVTDSPFPYSDIVTTTTHKSLRGPRGAMIF 281
Query: 270 FRKGVKEINKQGKEV 284
FRKG++++ +GKE+
Sbjct: 282 FRKGIRKVTTKGKEI 296
|
Interconversion of serine and glycine. Candida albicans (taxid: 5476) EC: 2 EC: . EC: 1 EC: . EC: 2 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 286 | ||||||
| 255572585 | 515 | serine hydroxymethyltransferase, putativ | 0.993 | 0.551 | 0.961 | 1e-162 | |
| 1707998 | 518 | RecName: Full=Serine hydroxymethyltransf | 0.993 | 0.548 | 0.950 | 1e-162 | |
| 118489111 | 520 | unknown [Populus trichocarpa x Populus d | 0.993 | 0.546 | 0.957 | 1e-162 | |
| 134142067 | 520 | mitochondrial serine hydroxymethyltransf | 0.993 | 0.546 | 0.957 | 1e-162 | |
| 224097398 | 518 | precursor of transferase serine hydroxym | 0.993 | 0.548 | 0.957 | 1e-162 | |
| 224109940 | 520 | precursor of transferase serine hydroxym | 0.993 | 0.546 | 0.943 | 1e-160 | |
| 359495798 | 518 | PREDICTED: serine hydroxymethyltransfera | 0.993 | 0.548 | 0.947 | 1e-160 | |
| 312281845 | 518 | unnamed protein product [Thellungiella h | 0.993 | 0.548 | 0.943 | 1e-160 | |
| 134142077 | 520 | mitochondrial serine hydroxymethyltransf | 0.993 | 0.546 | 0.940 | 1e-160 | |
| 1346155 | 517 | RecName: Full=Serine hydroxymethyltransf | 0.993 | 0.549 | 0.943 | 1e-160 |
| >gi|255572585|ref|XP_002527226.1| serine hydroxymethyltransferase, putative [Ricinus communis] gi|223533402|gb|EEF35152.1| serine hydroxymethyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 273/284 (96%), Positives = 280/284 (98%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLPNEAVYEKEK+G TWPKQLNAPLEVVDPEIADIIE EKARQWKGLELIPSENFTSV
Sbjct: 30 MSSLPNEAVYEKEKSGATWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSV 89
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDP KWGVNVQSLS
Sbjct: 90 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQSLS 149
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG
Sbjct: 150 GSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 209
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSA LFRPKLIVAGASAYARLYDYERIRKVC+KQKAI+LADMAHISGLVAAG
Sbjct: 210 YIDYDQLEKSAVLFRPKLIVAGASAYARLYDYERIRKVCDKQKAILLADMAHISGLVAAG 269
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPF+YADVVTTTTHKSLRGPRGAMIF+RKGVKE+NKQGKEV
Sbjct: 270 VIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKEV 313
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1707998|sp|P50433.1|GLYM_SOLTU RecName: Full=Serine hydroxymethyltransferase, mitochondrial; Short=SHMT; AltName: Full=Glycine hydroxymethyltransferase; AltName: Full=Serine methylase; Flags: Precursor gi|438247|emb|CAA81082.1| glycine hydroxymethyltransferase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/284 (95%), Positives = 281/284 (98%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLPNEAVY+KEK+GV WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV
Sbjct: 30 MSSLPNEAVYDKEKSGVAWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 89
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LS
Sbjct: 90 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLS 149
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NFQVYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTG
Sbjct: 150 GSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTG 209
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY+RIRKVCNKQKAI+LADMAHISGLVAAG
Sbjct: 210 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAG 269
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPF+YADVVTTTTHKSLRGPRGAMIF+RKGVKE+NKQGKEV
Sbjct: 270 VIPSPFDYADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKEV 313
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118489111|gb|ABK96362.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust.
Identities = 272/284 (95%), Positives = 280/284 (98%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLP+EAVYEKEK GVTWPKQLNAPLEVVDP+IADIIE EKARQWKGLELIPSENFTSV
Sbjct: 33 MSSLPDEAVYEKEKPGVTWPKQLNAPLEVVDPQIADIIELEKARQWKGLELIPSENFTSV 92
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNE+IDMAESLCQKRALEAFRLDP KWGVNVQSLS
Sbjct: 93 SVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFRLDPAKWGVNVQSLS 152
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSPSNFQVYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG
Sbjct: 153 GSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 212
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAI+LADMAHISGLVAAG
Sbjct: 213 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAG 272
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEV
Sbjct: 273 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEV 316
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|134142067|gb|ABO61377.1| mitochondrial serine hydroxymethyltransferase [Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust.
Identities = 272/284 (95%), Positives = 280/284 (98%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLP+EAVYEKEK GVTWPKQLNAPLEVVDP+IADIIE EKARQWKGLELIPSENFTSV
Sbjct: 33 MSSLPDEAVYEKEKPGVTWPKQLNAPLEVVDPQIADIIELEKARQWKGLELIPSENFTSV 92
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNE+IDMAESLCQKRALEAFRLDP KWGVNVQSLS
Sbjct: 93 SVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFRLDPAKWGVNVQSLS 152
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSPSNFQVYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG
Sbjct: 153 GSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 212
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAI+LADMAHISGLVAAG
Sbjct: 213 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAG 272
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEV
Sbjct: 273 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEV 316
|
Source: Populus tremuloides Species: Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097398|ref|XP_002310916.1| precursor of transferase serine hydroxymethyltransferase 2 [Populus trichocarpa] gi|222850736|gb|EEE88283.1| precursor of transferase serine hydroxymethyltransferase 2 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1481), Expect = e-162, Method: Compositional matrix adjust.
Identities = 272/284 (95%), Positives = 280/284 (98%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLP+EAVYEKEK GVTWPKQLNAPLEVVDP+IADIIE EKARQWKGLELIPSENFTSV
Sbjct: 31 MSSLPDEAVYEKEKPGVTWPKQLNAPLEVVDPQIADIIELEKARQWKGLELIPSENFTSV 90
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNE+IDMAESLCQKRALEAFRLDP KWGVNVQSLS
Sbjct: 91 SVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFRLDPAKWGVNVQSLS 150
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSPSNFQVYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG
Sbjct: 151 GSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 210
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAI+LADMAHISGLVAAG
Sbjct: 211 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAG 270
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEV
Sbjct: 271 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEV 314
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109940|ref|XP_002315363.1| precursor of transferase serine hydroxymethyltransferase 7 [Populus trichocarpa] gi|222864403|gb|EEF01534.1| precursor of transferase serine hydroxymethyltransferase 7 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/284 (94%), Positives = 278/284 (97%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLPNEAVYEKEK GV+WPKQLNAPLE VDP++ADIIE EKARQWKGLELIPSENFTSV
Sbjct: 33 MSSLPNEAVYEKEKPGVSWPKQLNAPLEAVDPQVADIIELEKARQWKGLELIPSENFTSV 92
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDP KWGVNVQSLS
Sbjct: 93 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQSLS 152
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NFQVYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG
Sbjct: 153 GSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 212
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAI+LADMAHISGLVAA
Sbjct: 213 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAD 272
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPFEYAD+VTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEV
Sbjct: 273 VIPSPFEYADIVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEV 316
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495798|ref|XP_002262872.2| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Vitis vinifera] gi|297736687|emb|CBI25704.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust.
Identities = 269/284 (94%), Positives = 278/284 (97%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
M+SLPNEAVYEKEK+ VTWPKQLNAPL VVDPEIADIIE EKARQWKGLELIPSENFTSV
Sbjct: 30 MASLPNEAVYEKEKSRVTWPKQLNAPLGVVDPEIADIIELEKARQWKGLELIPSENFTSV 89
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGS+MTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDP KWGVNVQSLS
Sbjct: 90 SVMQAVGSIMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQSLS 149
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NFQVYTALLK H+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG
Sbjct: 150 GSPANFQVYTALLKAHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 209
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAI+LADMAHISGLVAAG
Sbjct: 210 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAG 269
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPFEYAD+VTTTTHKSLRGPRGAMIFFRKGVKE+NKQGKEV
Sbjct: 270 VIPSPFEYADIVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKEV 313
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312281845|dbj|BAJ33788.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/284 (94%), Positives = 278/284 (97%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLP+EAV +KEK+ VTWPKQLNAPLE VDPEIADIIEHEKARQWKGLELIPSENFTSV
Sbjct: 30 MSSLPSEAVDDKEKSRVTWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSV 89
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDPEKWGVNVQ LS
Sbjct: 90 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLS 149
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NF VYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTG
Sbjct: 150 GSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTG 209
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQ+EKSATLFRPKLIVAGASAYARLYDY RIRKVCNKQKA+MLADMAHISGLVAAG
Sbjct: 210 YIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAG 269
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV
Sbjct: 270 VIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 313
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|134142077|gb|ABO61382.1| mitochondrial serine hydroxymethyltransferase [Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust.
Identities = 267/284 (94%), Positives = 278/284 (97%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLPNEAVYEKEK GV+WPKQLNAPLE VDP++ADIIE EKARQWKGLELIPSENFTSV
Sbjct: 33 MSSLPNEAVYEKEKPGVSWPKQLNAPLEAVDPQVADIIELEKARQWKGLELIPSENFTSV 92
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDP +WGVNVQSLS
Sbjct: 93 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPAQWGVNVQSLS 152
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NFQVYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG
Sbjct: 153 GSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 212
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAI+LADMAHISGLVAA
Sbjct: 213 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAILLADMAHISGLVAAD 272
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPFEYAD+VTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEV
Sbjct: 273 VIPSPFEYADIVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEV 316
|
Source: Populus tremuloides Species: Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1346155|sp|P49357.1|GLYM_FLAPR RecName: Full=Serine hydroxymethyltransferase 1, mitochondrial; Short=SHMT; AltName: Full=Glycine hydroxymethyltransferase; AltName: Full=Serine methylase; Flags: Precursor gi|437995|emb|CAA81078.1| glycine hydroxymethyltransferase [Flaveria pringlei] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/284 (94%), Positives = 277/284 (97%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLP+EAVYEKE+ GVTWPKQLNAPLEVVDPEIADIIE EKARQWKGLELIPSENFTS+
Sbjct: 30 MSSLPSEAVYEKERPGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSL 89
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDP KWGVNVQ LS
Sbjct: 90 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLS 149
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NF VYTALLK HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG
Sbjct: 150 GSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 209
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSATLFRPKLIVAGASAYARLYDY RIRKVC+KQKAIMLADMAHISGLVAAG
Sbjct: 210 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAG 269
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKG+KE+NKQGKEV
Sbjct: 270 VIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKEV 313
|
Source: Flaveria pringlei Species: Flaveria pringlei Genus: Flaveria Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 286 | ||||||
| TAIR|locus:2005518 | 517 | SHM1 "serine transhydroxymethy | 0.993 | 0.549 | 0.940 | 8.6e-143 | |
| TAIR|locus:2148463 | 533 | SHM2 "serine hydroxymethyltran | 0.993 | 0.532 | 0.894 | 1.8e-135 | |
| POMBASE|SPAC18G6.04c | 488 | shm2 "serine hydroxymethyltran | 0.923 | 0.540 | 0.693 | 2.5e-97 | |
| ASPGD|ASPL0000008876 | 600 | AN10745 [Emericella nidulans ( | 0.912 | 0.435 | 0.685 | 4.1e-97 | |
| CGD|CAL0003822 | 493 | SHM1 [Candida albicans (taxid: | 0.916 | 0.531 | 0.679 | 8.4e-97 | |
| UNIPROTKB|Q59PP7 | 493 | SHM1 "Putative uncharacterized | 0.916 | 0.531 | 0.679 | 8.4e-97 | |
| UNIPROTKB|G4MRB4 | 516 | MGG_13781 "Serine hydroxymethy | 0.909 | 0.503 | 0.684 | 2.9e-96 | |
| POMBASE|SPAC24C9.12c | 467 | SPAC24C9.12c "glycine hydroxym | 0.905 | 0.554 | 0.683 | 4.7e-96 | |
| CGD|CAL0001464 | 470 | SHM2 [Candida albicans (taxid: | 0.902 | 0.548 | 0.679 | 7.6e-96 | |
| UNIPROTKB|O13426 | 470 | SHM2 "Serine hydroxymethyltran | 0.902 | 0.548 | 0.679 | 7.6e-96 |
| TAIR|locus:2005518 SHM1 "serine transhydroxymethyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1396 (496.5 bits), Expect = 8.6e-143, P = 8.6e-143
Identities = 267/284 (94%), Positives = 277/284 (97%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSLP+EAV EKE++ VTWPKQLNAPLE VDPEIADIIEHEKARQWKGLELIPSENFTSV
Sbjct: 29 MSSLPSEAVDEKERSRVTWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSV 88
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAFRLDPEKWGVNVQ LS
Sbjct: 89 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLS 148
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NF VYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+ESTG
Sbjct: 149 GSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTG 208
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQ+EKSATLFRPKLIVAGASAYARLYDY RIRKVCNKQKA+MLADMAHISGLVAA
Sbjct: 209 YIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAN 268
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPF+YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV
Sbjct: 269 VIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 312
|
|
| TAIR|locus:2148463 SHM2 "serine hydroxymethyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1327 (472.2 bits), Expect = 1.8e-135, P = 1.8e-135
Identities = 254/284 (89%), Positives = 269/284 (94%)
Query: 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSV 60
MSSL A+ E EK+ +W KQLNA L+ +DPE+ADIIE EKARQWKG ELIPSENFTS+
Sbjct: 29 MSSLSTAAMAESEKSRSSWIKQLNASLDEIDPEVADIIELEKARQWKGFELIPSENFTSL 88
Query: 61 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120
SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LCQKRALEAF+LDP KWGVNVQSLS
Sbjct: 89 SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLS 148
Query: 121 GSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180
GSP+NFQVYTALLKPH+RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL+E+TG
Sbjct: 149 GSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDENTG 208
Query: 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240
YIDYDQLEKSA LFRPKLIVAGASAYARLYDY RIRKVCNKQKA+MLADMAHISGLVAAG
Sbjct: 209 YIDYDQLEKSAVLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAG 268
Query: 241 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG+KEINKQGKEV
Sbjct: 269 VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGKEV 312
|
|
| POMBASE|SPAC18G6.04c shm2 "serine hydroxymethyltransferase Shm2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 183/264 (69%), Positives = 212/264 (80%)
Query: 21 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPG 80
K L APL DP + I+E EK+RQ + + LI SENFTS +VM A+GS+M NKYSEGYPG
Sbjct: 28 KLLKAPLAECDPTVYKILESEKSRQKESIALIASENFTSRAVMDALGSIMQNKYSEGYPG 87
Query: 81 ARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIM 140
ARYYGGNE+ID AE LCQ RALEAF LD EKWGVNVQ SGSP+N Q Y A++KPHDR+M
Sbjct: 88 ARYYGGNEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLM 147
Query: 141 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200
LDLPHGGHLSHG+ T K ISAVS +F TMPY +N+ TG IDYD LEK+A FRPK+IV
Sbjct: 148 GLDLPHGGHLSHGFSTPQKAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIV 207
Query: 201 AGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL 260
AGASAYARL DY+R+RK+ A +L DMAHISGLVAAGVIPSPFEYAD+VTTTTHKSL
Sbjct: 208 AGASAYARLVDYKRMRKITEMCNAYLLCDMAHISGLVAAGVIPSPFEYADIVTTTTHKSL 267
Query: 261 RGPRGAMIFFRKGVKEINKQGKEV 284
RGPRGAMIF+RKG + +K+G +
Sbjct: 268 RGPRGAMIFYRKGTRSHDKRGNPI 291
|
|
| ASPGD|ASPL0000008876 AN10745 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 179/261 (68%), Positives = 216/261 (82%)
Query: 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGAR 82
L APLE DP + +I++ EK RQ + LIPSENFTS +V+ A+GSVM NKYSEGYPGAR
Sbjct: 126 LTAPLEQADPSVYNILQKEKKRQQHFINLIPSENFTSQAVLDALGSVMQNKYSEGYPGAR 185
Query: 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 142
YYGGNE+ID AE LCQ+RALE FRL PE+WGVNVQ LSGSP+N +ALL HDR+M L
Sbjct: 186 YYGGNEHIDEAERLCQQRALETFRLSPEEWGVNVQPLSGSPANLYAISALLNTHDRLMGL 245
Query: 143 DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202
DLPHGGHLSHGYQT TKKIS +S +FET+PYRL+ESTG IDY+ LEK A L+RPKLI+AG
Sbjct: 246 DLPHGGHLSHGYQTPTKKISFISKYFETLPYRLDESTGLIDYESLEKQALLYRPKLIIAG 305
Query: 203 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 262
SAY+RL DY R+R++ + A +++DMAHISGLVAAGVIPSPF ++DVVTTTTHKSLRG
Sbjct: 306 TSAYSRLIDYPRMRQIADNAGAYLMSDMAHISGLVAAGVIPSPFAHSDVVTTTTHKSLRG 365
Query: 263 PRGAMIFFRKGVKEINKQGKE 283
PRGAMIF+RKG++ +K+G +
Sbjct: 366 PRGAMIFYRKGIRRTDKKGNQ 386
|
|
| CGD|CAL0003822 SHM1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 178/262 (67%), Positives = 219/262 (83%)
Query: 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGAR 82
++ ++ VDPE+ADI+ E+ RQ + LIPSENFTS +VM +GS M NKYSEGYPG R
Sbjct: 35 ISKSVQDVDPEMADILNQERTRQKNSITLIPSENFTSKAVMDLLGSEMQNKYSEGYPGER 94
Query: 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 142
YYGGNE ID AE+LCQKRALEAF LDP +WGVNVQ LSG+P+N Y+A+L+ DRIM L
Sbjct: 95 YYGGNEIIDKAEALCQKRALEAFGLDPSQWGVNVQPLSGAPANLYAYSAILEVGDRIMGL 154
Query: 143 DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202
DLPHGGHLSHGYQT+T KIS +S +F+TMPYRLNE TG IDYD LEK+A LFRPK+IVAG
Sbjct: 155 DLPHGGHLSHGYQTNTTKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKVIVAG 214
Query: 203 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 262
ASAY+R+ DY+R+R++ +K A +L+DMAHISGLV+AGV SPF Y+D+VTTTTHKSLRG
Sbjct: 215 ASAYSRVIDYKRMRQIADKVGAYLLSDMAHISGLVSAGVTDSPFPYSDIVTTTTHKSLRG 274
Query: 263 PRGAMIFFRKGVKEINKQGKEV 284
PRGAMIFFRKG++++ K+GKE+
Sbjct: 275 PRGAMIFFRKGIRKVTKKGKEI 296
|
|
| UNIPROTKB|Q59PP7 SHM1 "Putative uncharacterized protein SHM1" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
Identities = 178/262 (67%), Positives = 219/262 (83%)
Query: 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGAR 82
++ ++ VDPE+ADI+ E+ RQ + LIPSENFTS +VM +GS M NKYSEGYPG R
Sbjct: 35 ISKSVQDVDPEMADILNQERTRQKNSITLIPSENFTSKAVMDLLGSEMQNKYSEGYPGER 94
Query: 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 142
YYGGNE ID AE+LCQKRALEAF LDP +WGVNVQ LSG+P+N Y+A+L+ DRIM L
Sbjct: 95 YYGGNEIIDKAEALCQKRALEAFGLDPSQWGVNVQPLSGAPANLYAYSAILEVGDRIMGL 154
Query: 143 DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202
DLPHGGHLSHGYQT+T KIS +S +F+TMPYRLNE TG IDYD LEK+A LFRPK+IVAG
Sbjct: 155 DLPHGGHLSHGYQTNTTKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKVIVAG 214
Query: 203 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 262
ASAY+R+ DY+R+R++ +K A +L+DMAHISGLV+AGV SPF Y+D+VTTTTHKSLRG
Sbjct: 215 ASAYSRVIDYKRMRQIADKVGAYLLSDMAHISGLVSAGVTDSPFPYSDIVTTTTHKSLRG 274
Query: 263 PRGAMIFFRKGVKEINKQGKEV 284
PRGAMIFFRKG++++ K+GKE+
Sbjct: 275 PRGAMIFFRKGIRKVTKKGKEI 296
|
|
| UNIPROTKB|G4MRB4 MGG_13781 "Serine hydroxymethyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 178/260 (68%), Positives = 217/260 (83%)
Query: 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGAR 82
L++ L+ DP + DI+E EK RQ + LIPSENFTS +V+ A+GS M NKYSEGYPGAR
Sbjct: 39 LSSHLQTADPAMYDIVEKEKQRQKHYINLIPSENFTSQAVLDALGSPMQNKYSEGYPGAR 98
Query: 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 142
YYGGNE+ID +E LCQ+RALE F LD ++WGVNVQ+LSG+P+N VY+AL+ HDR+M L
Sbjct: 99 YYGGNEFIDQSERLCQQRALETFGLDDKQWGVNVQALSGAPANLYVYSALMGVHDRMMGL 158
Query: 143 DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202
DLPHGGHLSHGYQT TKKIS +S +FET+PYRL+ESTGYIDYD+LE+ A ++RPK+IVAG
Sbjct: 159 DLPHGGHLSHGYQTPTKKISFISKYFETVPYRLDESTGYIDYDKLEELAHIYRPKIIVAG 218
Query: 203 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 262
SAY+R DY+R+R++C+K A MLADMAHISG+VAA VIP PF YAD+VTTTTHKSLRG
Sbjct: 219 TSAYSRFIDYKRMREICDKVNAYMLADMAHISGMVAAKVIPGPFGYADIVTTTTHKSLRG 278
Query: 263 PRGAMIFFRKGVKEINKQGK 282
PRGAMIFFRKGV+ N + K
Sbjct: 279 PRGAMIFFRKGVRSTNPKTK 298
|
|
| POMBASE|SPAC24C9.12c SPAC24C9.12c "glycine hydroxymethyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 177/259 (68%), Positives = 214/259 (82%)
Query: 26 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYG 85
PL+ DP +A+I+ HE RQ + LI SENFTS +VM A+GSVM+NKYSEGYPGARYYG
Sbjct: 11 PLKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYG 70
Query: 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLP 145
GN++ID E+LCQ+RAL AF LDP KWGVNVQ LSGSP+N QVY A++ PH R+M LDLP
Sbjct: 71 GNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLP 130
Query: 146 HGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA 205
GGHLSHGYQTDTKKISAVS +FE+MPYR++ +TG IDYD LE A LFRPK++VAG SA
Sbjct: 131 SGGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSA 190
Query: 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG 265
Y RL DY R+R++ + A ++ DMAHISGLV+AGVIPSPFEYADVVTTTTHKSLRGPRG
Sbjct: 191 YCRLIDYARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRG 250
Query: 266 AMIFFRKGVKEINKQGKEV 284
AMIFFR+G+++ +K+G +
Sbjct: 251 AMIFFRRGLRKHDKKGNPI 269
|
|
| CGD|CAL0001464 SHM2 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 176/259 (67%), Positives = 217/259 (83%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
L+ DPE+ II+ E RQ + LI SENFT+ +V A+G+ M NKYSEGYPGARYYGG
Sbjct: 18 LKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYGG 77
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
NE+ID E LCQ+RAL+AF L P+KWGVNVQ+LSGSP+N QVY A++KPH+R+M LDLPH
Sbjct: 78 NEHIDRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPH 137
Query: 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 206
GGHLSHGYQTD++KISAVS +FETMPYR++ TG IDYD LEK+A L+RPK++VAG SAY
Sbjct: 138 GGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAY 197
Query: 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266
RL DY+R+R++ +K A ++ DMAHISGL+AAGVIPSPFEYAD+VTTTTHKSLRGPRGA
Sbjct: 198 CRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGA 257
Query: 267 MIFFRKGVKEIN-KQGKEV 284
MIFFR+GV+ +N K G+E+
Sbjct: 258 MIFFRRGVRSVNPKTGQEI 276
|
|
| UNIPROTKB|O13426 SHM2 "Serine hydroxymethyltransferase, cytosolic" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 176/259 (67%), Positives = 217/259 (83%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
L+ DPE+ II+ E RQ + LI SENFT+ +V A+G+ M NKYSEGYPGARYYGG
Sbjct: 18 LKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYGG 77
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
NE+ID E LCQ+RAL+AF L P+KWGVNVQ+LSGSP+N QVY A++KPH+R+M LDLPH
Sbjct: 78 NEHIDRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPH 137
Query: 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 206
GGHLSHGYQTD++KISAVS +FETMPYR++ TG IDYD LEK+A L+RPK++VAG SAY
Sbjct: 138 GGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAY 197
Query: 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266
RL DY+R+R++ +K A ++ DMAHISGL+AAGVIPSPFEYAD+VTTTTHKSLRGPRGA
Sbjct: 198 CRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGA 257
Query: 267 MIFFRKGVKEIN-KQGKEV 284
MIFFR+GV+ +N K G+E+
Sbjct: 258 MIFFRRGVRSVNPKTGQEI 276
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P34899 | GLYM_PEA | 2, ., 1, ., 2, ., 1 | 0.9293 | 0.9895 | 0.5463 | N/A | no |
| Q9SZJ5 | GLYM_ARATH | 2, ., 1, ., 2, ., 1 | 0.9401 | 0.9930 | 0.5493 | yes | no |
| P50433 | GLYM_SOLTU | 2, ., 1, ., 2, ., 1 | 0.9507 | 0.9930 | 0.5482 | N/A | no |
| P49357 | GLYM_FLAPR | 2, ., 1, ., 2, ., 1 | 0.9436 | 0.9930 | 0.5493 | N/A | no |
| P49358 | GLYN_FLAPR | 2, ., 1, ., 2, ., 1 | 0.9330 | 0.9930 | 0.5493 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.2 | 0.963 |
| 4th Layer | 2.1.2.1 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 286 | |||
| PLN03226 | 475 | PLN03226, PLN03226, serine hydroxymethyltransferas | 0.0 | |
| PTZ00094 | 452 | PTZ00094, PTZ00094, serine hydroxymethyltransferas | 1e-174 | |
| pfam00464 | 380 | pfam00464, SHMT, Serine hydroxymethyltransferase | 1e-160 | |
| cd00378 | 402 | cd00378, SHMT, Serine-glycine hydroxymethyltransfe | 1e-145 | |
| PLN02271 | 586 | PLN02271, PLN02271, serine hydroxymethyltransferas | 1e-132 | |
| COG0112 | 413 | COG0112, GlyA, Glycine/serine hydroxymethyltransfe | 1e-126 | |
| PRK00011 | 416 | PRK00011, glyA, serine hydroxymethyltransferase; R | 1e-123 | |
| PRK13034 | 416 | PRK13034, PRK13034, serine hydroxymethyltransferas | 1e-104 | |
| PRK13580 | 493 | PRK13580, PRK13580, serine hydroxymethyltransferas | 3e-60 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-28 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 2e-04 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 6e-04 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 0.003 |
| >gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 600 bits (1549), Expect = 0.0
Identities = 209/272 (76%), Positives = 231/272 (84%)
Query: 13 EKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTN 72
EK+ V+ PK NAPLE VDPEIADIIE EK RQWKGLELI SENFTS +VM+A+GS +TN
Sbjct: 1 EKSMVSVPKWGNAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTN 60
Query: 73 KYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL 132
KYSEG PGARYYGGNEYID E+LCQKRALEAFRLDPEKWGVNVQ LSGSP+NF VYTAL
Sbjct: 61 KYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTAL 120
Query: 133 LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT 192
L+PHDRIM LDLPHGGHLSHGYQTD KKISA SI+FE+MPYRL+ESTG IDYD+LEK A
Sbjct: 121 LQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAM 180
Query: 193 LFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVV 252
LFRPKLI+AGASAY R +DY R+RK+ +K A+++ DMAHISGLVAA SPFEY DVV
Sbjct: 181 LFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVV 240
Query: 253 TTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV 284
TTTTHKSLRGPRG MIFFRKG K QG+
Sbjct: 241 TTTTHKSLRGPRGGMIFFRKGPKPPKGQGEGA 272
|
Length = 475 |
| >gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 489 bits (1261), Expect = e-174
Identities = 170/254 (66%), Positives = 206/254 (81%), Gaps = 1/254 (0%)
Query: 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGAR 82
LN L+ DPE+ ++IE EK RQ +GLELI SENFTS +V++ +GS TNKY+EG PG R
Sbjct: 11 LNQSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNR 70
Query: 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 142
YYGGNE +D E+LCQKRALEAF LDPE+WGVNVQ SGSP+NF VYTALL+PHDRIM L
Sbjct: 71 YYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGL 130
Query: 143 DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202
DLP GGHL+HG+ T KK+SA SI+FE++PY++NE G IDYD+LE+ A FRPKLI+AG
Sbjct: 131 DLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE-KGLIDYDKLEELAKAFRPKLIIAG 189
Query: 203 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 262
ASAY R DY+R R++C+ A ++AD+AH SGLVAAGV+PSPF YADVVTTTTHKSLRG
Sbjct: 190 ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRG 249
Query: 263 PRGAMIFFRKGVKE 276
PR +IF+RK VK
Sbjct: 250 PRSGLIFYRKKVKP 263
|
Length = 452 |
| >gnl|CDD|189558 pfam00464, SHMT, Serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 449 bits (1156), Expect = e-160
Identities = 163/253 (64%), Positives = 193/253 (76%), Gaps = 9/253 (3%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
L DPEI DII+ EK RQ +G+ELI SENFTS +VM+A+GSV+TNKY+EGYPG RYYGG
Sbjct: 1 LSDSDPEIFDIIKKEKERQREGIELIASENFTSRAVMEALGSVLTNKYAEGYPGKRYYGG 60
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
EY+D E+L Q RA E F LD GVNVQ LSGS +N VYTALL P DRIM LDLPH
Sbjct: 61 CEYVDEVETLAQDRAKELFGLD----GVNVQPLSGSQANLAVYTALLNPGDRIMGLDLPH 116
Query: 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 206
GGHL+HGY + FFE+MPY ++ TG IDYDQLEK+A LF+PKLIVAG SAY
Sbjct: 117 GGHLTHGYPVNF-----SGKFFESMPYGVDPDTGLIDYDQLEKNAKLFKPKLIVAGTSAY 171
Query: 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266
+RL DY R R++ ++ A ++ DMAHI+GLVAAGVIPSPF YA VVTTTTHK+LRGPRG
Sbjct: 172 SRLIDYARFREIADEVGAYLMVDMAHIAGLVAAGVIPSPFPYAHVVTTTTHKTLRGPRGG 231
Query: 267 MIFFRKGVKEINK 279
MIFFR+ + E+ K
Sbjct: 232 MIFFREILYELEK 244
|
Length = 380 |
| >gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Score = 413 bits (1064), Expect = e-145
Identities = 145/252 (57%), Positives = 179/252 (71%), Gaps = 9/252 (3%)
Query: 30 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEY 89
VDPEIA+II+ E RQ + LELI SENFTS +VM+A+GS +TNKY+EGYPG RYYGG EY
Sbjct: 3 VDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEY 62
Query: 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGH 149
+D E L +RA + F + NVQ SGS +N VY ALL+P D IM LDL HGGH
Sbjct: 63 VDEIEDLAIERAKKLFGAE----YANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGH 118
Query: 150 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARL 209
L+HG T K+SA FE++PY ++ TG IDYD LEK A F+PKLIVAGASAY R
Sbjct: 119 LTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRP 175
Query: 210 YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF 269
D++R R++ ++ A +L DMAH++GLVA GV P+P ADVVTTTTHK+LRGPRG +I
Sbjct: 176 IDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLIL 235
Query: 270 FRKG--VKEINK 279
RKG K+IN
Sbjct: 236 TRKGELAKKINS 247
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. Length = 402 |
| >gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Score = 386 bits (993), Expect = e-132
Identities = 158/263 (60%), Positives = 199/263 (75%), Gaps = 2/263 (0%)
Query: 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 83
N PL DP+I +++E EK RQ+KG+ELI SENF +VM+A+GS +TNKYSEG PGARY
Sbjct: 126 NQPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARY 185
Query: 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 143
Y GN+YID E LC +RAL AF LD EKWGVNVQ S + +NF VYT LL P DRIM LD
Sbjct: 186 YTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLD 245
Query: 144 LPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202
P GGH+SHGY T KK+S SIFFE++PY++N TGYIDYD+LE+ A FRPK+++ G
Sbjct: 246 SPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICG 305
Query: 203 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG 262
S+Y R +DY R R++ +K A+++ DMAHISGLVAA +PF+Y D+VT+TTHKSLRG
Sbjct: 306 GSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRG 365
Query: 263 PRGAMIFFRKGVKEINKQGKEVS 285
PRG +IF+RKG K + KQG +S
Sbjct: 366 PRGGIIFYRKGPK-LRKQGMLLS 387
|
Length = 586 |
| >gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 364 bits (936), Expect = e-126
Identities = 127/256 (49%), Positives = 170/256 (66%), Gaps = 11/256 (4%)
Query: 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYY 84
A L DPEI + I+ E RQ + +ELI SENFTS +VM+A GS +TNKY+EGYPG RYY
Sbjct: 5 ASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYY 64
Query: 85 GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDL 144
GG EY+D E L +RA + F + NVQ SGS +N VY ALL+P D IM LDL
Sbjct: 65 GGCEYVDEVEELAIERAKKLFGAE----YANVQPHSGSQANQAVYLALLQPGDTIMGLDL 120
Query: 145 PHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS 204
HGGHL+HG ++ F + Y ++ TG IDYD++EK A +PKLI+AG S
Sbjct: 121 SHGGHLTHGS-----PVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGS 175
Query: 205 AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPR 264
AY+R D++R R++ ++ A ++ DMAH++GL+A GV P+P +ADVVTTTTHK+LRGPR
Sbjct: 176 AYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPR 235
Query: 265 GAMIFFRKGVKEINKQ 280
G +I +E+ K+
Sbjct: 236 GGIILTND--EELAKK 249
|
Length = 413 |
| >gnl|CDD|234571 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 356 bits (917), Expect = e-123
Identities = 134/259 (51%), Positives = 173/259 (66%), Gaps = 11/259 (4%)
Query: 22 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGA 81
L DPEIAD IE E RQ + +ELI SENF S +VM+A GSV+TNKY+EGYPG
Sbjct: 1 FFMDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGK 60
Query: 82 RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMA 141
RYYGG EY+D+ E L RA E F + NVQ SGS +N VY ALLKP D I+
Sbjct: 61 RYYGGCEYVDVVEQLAIDRAKELFGAE----YANVQPHSGSQANAAVYFALLKPGDTILG 116
Query: 142 LDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201
+DL HGGHL+HG ++ + + Y ++E TG IDYD++EK A +PKLI+A
Sbjct: 117 MDLAHGGHLTHG-----SPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIA 171
Query: 202 GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLR 261
GASAY+R D++R R++ ++ A ++ DMAHI+GLVAAGV PSP +ADVVTTTTHK+LR
Sbjct: 172 GASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLR 231
Query: 262 GPRGAMIFFRKGVKEINKQ 280
GPRG +I +E+ K+
Sbjct: 232 GPRGGLILTND--EELAKK 248
|
Length = 416 |
| >gnl|CDD|237280 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = e-104
Identities = 126/245 (51%), Positives = 164/245 (66%), Gaps = 9/245 (3%)
Query: 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 83
+ LE D E+ I E RQ LELI SENFTS +VM+A GSV+TNKY+EGYPG RY
Sbjct: 6 SDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRY 65
Query: 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 143
YGG E++D E+L +RA + F D NVQ SGS +N VY ALLKP D I+ +
Sbjct: 66 YGGCEFVDEVEALAIERAKQLFGCD----YANVQPHSGSQANGAVYLALLKPGDTILGMS 121
Query: 144 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA 203
L HGGHL+HG K+S ++ + Y ++ TG IDYD++E+ A +PKLI+AG
Sbjct: 122 LSHGGHLTHG-----AKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGF 176
Query: 204 SAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 263
SAY R D+ R R++ ++ A+++ DMAHI+GLVAAG P+PF +A VVTTTTHK+LRGP
Sbjct: 177 SAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGP 236
Query: 264 RGAMI 268
RG MI
Sbjct: 237 RGGMI 241
|
Length = 416 |
| >gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 3e-60
Identities = 96/288 (33%), Positives = 155/288 (53%), Gaps = 44/288 (15%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
+ V+P IA+ I E A Q L+LI SEN++S++V A+G+++T+KY+EG PG R+Y G
Sbjct: 30 ILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAG 89
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPH---------- 136
+ +D E + A E F + VQ SG+ +N + A+L
Sbjct: 90 CQNVDTVEWEAAEHAKELFGAE----HAYVQPHSGADANLVAFWAILAHKVESPALEKLG 145
Query: 137 ---------------------DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175
R++ + L GGHL+HG++ + IS F Y +
Sbjct: 146 AKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPN---IS--GKMFHQRSYGV 200
Query: 176 NESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISG 235
+ TG +DYD++ A F+P ++VAG SAY R ++ ++R++ ++ A+++ DMAH +G
Sbjct: 201 DPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAG 260
Query: 236 LVAAGVIP---SPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKE-INK 279
LVA V P +AD+VTTTTHK+LRGPRG ++ +K + ++K
Sbjct: 261 LVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDK 308
|
Length = 493 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-28
Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 15/178 (8%)
Query: 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQT 156
+++ + P SG+ +N ALL P D ++ HG
Sbjct: 5 LEEKLARLLQ--PGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRYWV---- 57
Query: 157 DTKKISAVSIFFETMPYRLNESTGY-IDYDQLEKSATLFRPKLIVAGASAYAR--LYDYE 213
+A + +P ++++ +D LE+ LIV + + L +
Sbjct: 58 -----AAELAGAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLK 112
Query: 214 RIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR 271
IRK+ + ++L D A G A + P ADVVT + HK+L G G ++ +
Sbjct: 113 EIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 30/189 (15%)
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWG----VNVQSLSGSPSNFQVYTALLK--PHDRIM 140
N Y + AL F V SG+ +N + LL+ P D I+
Sbjct: 35 NLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAIL 94
Query: 141 ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY-IDYDQLE---KSATLFRP 196
+ + E + Y L S + +D+D LE K AT
Sbjct: 95 VPAPTYPSY----------IRIFRLAGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNK 144
Query: 197 KLIVAGAS----AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF-----E 247
++ A L + E++ + + ++L D A+ G V + E
Sbjct: 145 VVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYA-GFVFGSLDAVATRALLAE 203
Query: 248 YADVVTTTT 256
+++ +
Sbjct: 204 GPNLLVVGS 212
|
Length = 357 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLRGPRG 265
+ I ++ ++ A++L D A AAG +P + D + + HK L GP G
Sbjct: 180 PVKEIAELAHEHGALVLVDAAQ-----AAGHLPIDVQELGCDFLAFSGHKWLLGPTG 231
|
Length = 405 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 26/169 (15%)
Query: 120 SGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS-IFFETMPYRLNES 178
SG+ +N A + D ++ G +H Y +T + + +P
Sbjct: 55 SGTMANQLALMAHCRRGDEVIC------GEPAHIYFDETGGHAELGGAQPVPLP---GAE 105
Query: 179 TGYIDYDQLEKSATLF------RPKLIV-------AGASAYARLYDYERIRKVCNKQKAI 225
G +D + LE + LI AG + L + IR + +
Sbjct: 106 AGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVS-LEELREIRAIAREHGIP 164
Query: 226 MLADMAHIS-GLVAAGVIPSP-FEYADVVTTTTHKSLRGPRGAMIFFRK 272
+ D A ++ VA GVI YAD V+ + K L P G+++
Sbjct: 165 LHLDGARLANAAVALGVIVKEITSYADSVSMSLSKGLGAPVGSVLAGSD 213
|
Length = 288 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 286 | |||
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 100.0 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 100.0 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 100.0 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 100.0 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 100.0 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 100.0 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.97 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.96 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.95 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.93 | |
| PLN02651 | 364 | cysteine desulfurase | 99.93 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.93 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.92 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.92 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.92 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.92 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.92 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.92 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.91 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.91 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.91 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.91 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.91 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.91 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.91 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.9 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.9 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.9 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.9 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.9 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.9 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.89 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.89 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.89 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.89 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.89 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.89 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.89 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.89 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.89 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.88 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.88 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.88 | |
| PLN02368 | 407 | alanine transaminase | 99.88 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.88 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.88 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.88 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.88 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.88 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.88 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.88 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.88 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.88 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.88 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.88 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.88 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.88 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.87 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.87 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.87 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.87 | |
| PRK07324 | 373 | transaminase; Validated | 99.87 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.87 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.87 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.87 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.87 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.86 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.86 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.86 | |
| PLN02231 | 534 | alanine transaminase | 99.86 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.86 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.86 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.86 | |
| PLN02187 | 462 | rooty/superroot1 | 99.86 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.85 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.85 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.85 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.85 | |
| PLN02656 | 409 | tyrosine transaminase | 99.85 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.85 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.85 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.85 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.85 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.85 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.84 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.84 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.84 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.84 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.84 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.83 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.83 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.83 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.83 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.83 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.83 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.82 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.82 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.82 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.82 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.82 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.82 | |
| PLN02721 | 353 | threonine aldolase | 99.82 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.82 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.82 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.81 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.81 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.81 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.81 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.81 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.81 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.81 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.8 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.8 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.8 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.8 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.8 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.8 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.8 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.8 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.8 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.8 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.8 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.79 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.79 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.79 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.79 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.79 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.79 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.79 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.79 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.78 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.78 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.78 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.78 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.78 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.78 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.78 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.78 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.78 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.78 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.78 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.78 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.78 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.78 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.78 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.78 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.78 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.78 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.78 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.77 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.77 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.77 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.77 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.77 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.77 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.77 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.77 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.77 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.77 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.77 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.77 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.77 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.77 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.77 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.77 | |
| PLN02263 | 470 | serine decarboxylase | 99.77 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.77 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.76 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.76 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.76 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.76 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.75 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.75 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.75 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.75 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.75 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.75 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.75 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.75 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.74 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.74 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.74 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.74 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.74 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.74 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.74 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.74 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.74 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.74 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.74 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.74 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.73 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.73 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.73 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.73 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.73 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.73 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.73 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.73 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.72 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.72 | |
| PLN02397 | 423 | aspartate transaminase | 99.72 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.72 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.72 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.72 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.71 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.71 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.71 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.7 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.7 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.7 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.69 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.69 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.69 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.68 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.68 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.67 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.67 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.67 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.67 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.67 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.67 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.66 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.65 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.64 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.64 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.63 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.63 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.63 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.63 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.62 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.61 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.61 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.61 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.61 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.6 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.6 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.59 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.58 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.57 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.57 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.57 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.56 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.56 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.56 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.55 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.51 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.51 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.5 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.49 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.48 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.45 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.45 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.45 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.44 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.44 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.43 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.42 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.42 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.41 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.41 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.39 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.39 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.38 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.36 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.36 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 99.34 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.34 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.32 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.3 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.26 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.26 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.23 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.23 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.22 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.19 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.17 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.11 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.1 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.09 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.04 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 99.01 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.97 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.97 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 98.96 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 98.95 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 98.94 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 98.92 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 98.92 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.89 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.88 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 98.88 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.85 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 98.85 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 98.77 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 98.76 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 98.76 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.73 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 98.72 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.7 | |
| PRK07046 | 453 | aminotransferase; Validated | 98.7 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.68 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 98.68 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.67 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 98.66 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 98.66 | |
| PLN00144 | 382 | acetylornithine transaminase | 98.64 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.62 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 98.59 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 98.59 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 98.59 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.58 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 98.54 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 98.52 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.52 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 98.51 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 98.51 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 98.5 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 98.5 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 98.5 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 98.5 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 98.49 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.47 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 98.46 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 98.46 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.44 | |
| PRK06105 | 460 | aminotransferase; Provisional | 98.42 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 98.4 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.4 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.39 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.38 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 98.37 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 98.32 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 98.31 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 98.3 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.29 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 98.28 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 98.26 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.25 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 98.25 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 98.24 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 98.24 | |
| PRK07678 | 451 | aminotransferase; Validated | 98.2 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.2 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 98.17 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.17 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.17 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 98.15 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 98.12 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 98.1 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 98.09 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.08 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 98.07 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 98.07 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.06 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.02 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 98.01 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 97.94 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 97.77 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 97.66 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 97.52 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 97.41 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 97.25 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 96.95 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 96.63 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 96.61 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 96.59 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 96.51 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.48 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 96.46 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 95.79 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 95.4 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 95.25 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 95.09 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 94.22 |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=316.53 Aligned_cols=242 Identities=52% Similarity=0.833 Sum_probs=229.4
Q ss_pred ccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 023191 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (286)
..+...+++++..+.++..++.+.|+|+++||++|+.|++++.+.+.++|.+|||+.+||+++++++++|+.+.++.+++
T Consensus 5 ~~l~~~d~~i~~~i~~e~~rq~~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~L 84 (413)
T COG0112 5 ASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKL 84 (413)
T ss_pred hhHHhcCHHHHHHHHHHHHHHhhceeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCH
Q 023191 105 FRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184 (286)
Q Consensus 105 ~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~ 184 (286)
||++. ++|+..||+.||++++.++++|||+|+-.+..|++|++.+. .+.+.|..++.++++++++++.+|+
T Consensus 85 Fga~~----anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~-----~v~~sG~~~~~v~Y~vd~et~~IDy 155 (413)
T COG0112 85 FGAEY----ANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGS-----PVNFSGKLFNVVSYGVDPETGLIDY 155 (413)
T ss_pred hCCCc----cccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCC-----CCCccceeEEeEecccccccCccCH
Confidence 99998 57999999999999999999999999999999999999885 4567788889999999988999999
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCC
Q 023191 185 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPR 264 (286)
Q Consensus 185 e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~ 264 (286)
|++++.+.+++||+|+...|.++...|++++.+||++.|+++++|.||.+|++..+.+++|+.++|++++|+||+|.||+
T Consensus 156 D~~~k~a~e~kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPr 235 (413)
T COG0112 156 DEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPR 235 (413)
T ss_pred HHHHHHHHHhCCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCC
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEec-chh
Q 023191 265 GAMIFFRK-GVK 275 (286)
Q Consensus 265 gG~l~~~~-~~~ 275 (286)
||+|++++ ++.
T Consensus 236 GG~Il~~~eel~ 247 (413)
T COG0112 236 GGIILTNDEELA 247 (413)
T ss_pred ceEEEeccHHHH
Confidence 99999997 444
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=325.01 Aligned_cols=257 Identities=54% Similarity=0.934 Sum_probs=208.3
Q ss_pred cccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC
Q 023191 28 EVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL 107 (286)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~ 107 (286)
+..+|++++.+.++..++.+.|+|+++||++|+.+++++...+.++|.+|||+.++|++++.++++|+.+.++++++||+
T Consensus 2 ~~~d~ei~~li~~e~~rq~~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~ 81 (399)
T PF00464_consen 2 KEFDPEIYELIEKEEERQRSTLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGA 81 (399)
T ss_dssp HHHTHHHHHHHHHHHHHHHHSEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCHHHHHHHHHHHHHHhcCccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHH
Q 023191 108 DPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQL 187 (286)
Q Consensus 108 ~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l 187 (286)
+++.|.++|.+.||+.|+++++.++++|||+|+..+..+++|++.++....+.+...+..+..++++++++++.+|++++
T Consensus 82 ~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l 161 (399)
T PF00464_consen 82 EPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDEL 161 (399)
T ss_dssp STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHH
T ss_pred CcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHH
Confidence 99999999999999999999999999999999999999999998887654434445666678888889988899999999
Q ss_pred HHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceE
Q 023191 188 EKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAM 267 (286)
Q Consensus 188 ~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~ 267 (286)
++.+.+++||+|+++.|+++...|++++.+||++.|+++++|.+|.+|++..+..++|++++|++++|+||+|.||+||+
T Consensus 162 ~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrggi 241 (399)
T PF00464_consen 162 EKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGGI 241 (399)
T ss_dssp HHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-EE
T ss_pred HHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhhhhccCCcc
Q 023191 268 IFFRKGVKEINKQGKEV 284 (286)
Q Consensus 268 l~~~~~~~~~~~~~~~~ 284 (286)
|++|+..++.+|+++.+
T Consensus 242 I~~~~~~~~~~~~~~~~ 258 (399)
T PF00464_consen 242 ILTNKGSKNVDKKGKEI 258 (399)
T ss_dssp EEES-SEEEE-TTS-EE
T ss_pred EEEcCCccccCCccccc
Confidence 99998777777777653
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=304.33 Aligned_cols=268 Identities=76% Similarity=1.202 Sum_probs=253.6
Q ss_pred CCchhhccccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHH
Q 023191 17 VTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESL 96 (286)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (286)
.+..++++..+...+|+++..+..|..|+...|.|+++||+++..|.+|+...+.|.|.+|||+.+||+++++++++|..
T Consensus 11 ~~~~~~~~~~l~~~DPev~~ii~~Ek~RQ~~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~L 90 (477)
T KOG2467|consen 11 AAVIKLGNTPLEEVDPEVHDIIEKEKERQKRGIELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELL 90 (477)
T ss_pred hhhhhhhcCchhhcChHHHHHHHHHHHhhhcceeEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
++++..+.|+++++.||++|+..||+.||+++..+++.|+|+|+=.+..+++|++.+|..-.+.+.....-++..|+.++
T Consensus 91 Cq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~ 170 (477)
T KOG2467|consen 91 CQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVD 170 (477)
T ss_pred HHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeC
Confidence 99999999999999999999999999999999999999999999999999999999998777667667777888999999
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCC
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTT 256 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~ 256 (286)
+.++.+|+|.||+....++||+|+...|.+.+.++.+++.+||.+.|++++.|.||..|++..++.++||+++|+|++++
T Consensus 171 ~~TG~IDYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTT 250 (477)
T KOG2467|consen 171 PSTGYIDYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTT 250 (477)
T ss_pred CCCCceehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccc
Confidence 99999999999999998999999877888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEecchhhhh-ccCCcc
Q 023191 257 HKSLRGPRGAMIFFRKGVKEIN-KQGKEV 284 (286)
Q Consensus 257 ~K~l~gp~gG~l~~~~~~~~~~-~~~~~~ 284 (286)
||+|.||+||+|++|+.++... |+|+.|
T Consensus 251 HKsLRGPRg~mIFyRkGvk~~~~k~g~~i 279 (477)
T KOG2467|consen 251 HKSLRGPRGAMIFYRKGVKSIKPKQGKEI 279 (477)
T ss_pred cccccCCcceeEEEeccCCcCCCCCCCcc
Confidence 9999999999999999999988 567765
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=320.54 Aligned_cols=256 Identities=60% Similarity=1.018 Sum_probs=233.5
Q ss_pred hhhccccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 20 PKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
.++.++.++..+|++++.+.+|..++.+.|+|+++||++++.|++++...+.++|.+||++.+||++++.++++|..+.+
T Consensus 122 ~~~~~~~l~~~Dpei~~li~~E~~rQ~~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~e 201 (586)
T PLN02271 122 RAWGNQPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCE 201 (586)
T ss_pred HHHHhccHhhhCHHHHHHHHHHHHHHhcCeeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHH
Confidence 33445567888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccc-cccccceeeeEEEecccCCC
Q 023191 100 RALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNES 178 (286)
Q Consensus 100 ~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 178 (286)
+.+++||++++.|+++|+..||+.|+++++.++++|||+|+..+.+|++|+++++.... ..+...|..++.++++++.+
T Consensus 202 ra~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~ 281 (586)
T PLN02271 202 RALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQ 281 (586)
T ss_pred HHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccc
Confidence 99999999998898999999999999999999999999999999999999988764321 23556777788899888877
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCC
Q 023191 179 TGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHK 258 (286)
Q Consensus 179 ~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K 258 (286)
++.+|++++++.+..++||+|+++.+.++...|+++|.++|+++|+++++|+||.+|.+..+.++.++.++|++++++||
T Consensus 282 ~g~IDyd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHK 361 (586)
T PLN02271 282 TGYIDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHK 361 (586)
T ss_pred cCccCHHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcc
Confidence 89999999999666669999999877788889999999999999999999999999999999999998899999999999
Q ss_pred CCCCCCceEEEEecchh
Q 023191 259 SLRGPRGAMIFFRKGVK 275 (286)
Q Consensus 259 ~l~gp~gG~l~~~~~~~ 275 (286)
||.||+||+|++++++.
T Consensus 362 tLrGPrGG~I~~r~~~~ 378 (586)
T PLN02271 362 SLRGPRGGIIFYRKGPK 378 (586)
T ss_pred cCCCCCceEEEeccccc
Confidence 99999999999987655
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=294.47 Aligned_cols=262 Identities=79% Similarity=1.219 Sum_probs=229.2
Q ss_pred ccCCCchhhccccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHH
Q 023191 14 KNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 93 (286)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 93 (286)
++-+.++++....++..+|++++.+.++..++.+.|+|+++||++|+.+++++...+.++|.+|+++.++|+++...+++
T Consensus 2 ~~~~~~~~~~~~~~~~~d~~~~~~i~~e~~~q~~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~l 81 (475)
T PLN03226 2 KSMVSVPKWGNAPLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQI 81 (475)
T ss_pred cchhhhhhcchhhhhhcCHHHHHHHHHHHHHHHcCeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHH
Confidence 45667888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 94 ESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 94 ~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
|+.++++.+++|+.+.+.|.+++.+.||+.++++++.++++|||+|+..+..+++|++..+......+...+..+..+++
T Consensus 82 E~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y 161 (475)
T PLN03226 82 ETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPY 161 (475)
T ss_pred HHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeee
Confidence 99999999999999887766677789999999999999999999999988888888776543222223344444555677
Q ss_pred ccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEE
Q 023191 174 RLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (286)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (286)
..+.+++.+|+++|++++.++++|+|+++.++++...|+++|.++|+++|+++++|+||.+|.+..+..+.++.++|+++
T Consensus 162 ~~~~~~g~iD~d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~ 241 (475)
T PLN03226 162 RLDESTGLIDYDKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVT 241 (475)
T ss_pred eecCCCCCcCHHHHHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEE
Confidence 77767889999999999986688988776778898999999999999999999999999999999888777777899999
Q ss_pred eCCCCCCCCCCceEEEEecchh
Q 023191 254 TTTHKSLRGPRGAMIFFRKGVK 275 (286)
Q Consensus 254 ~s~~K~l~gp~gG~l~~~~~~~ 275 (286)
+++||||+||+||++++++++.
T Consensus 242 ~t~hK~L~GP~Gg~I~~~~~~~ 263 (475)
T PLN03226 242 TTTHKSLRGPRGGMIFFRKGPK 263 (475)
T ss_pred ecCcccccCCCceEEEEchhhc
Confidence 9999999999999999988655
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=289.79 Aligned_cols=247 Identities=37% Similarity=0.645 Sum_probs=220.4
Q ss_pred ccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 023191 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (286)
+.+...+|++++.+.+|..|+.+.|+|+++||++|+.+++++...+.++|.+|||+.++|++++.++++|..+.++.+++
T Consensus 28 ~~l~~~d~~~~~~~~~e~~rq~~~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~l 107 (493)
T PRK13580 28 DVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKEL 107 (493)
T ss_pred HHHHhhCHHHHHHHHHHHHHHhcCceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHH
Confidence 44677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeEEeCCChHHHHHHHHHhcCC-------------------------------CCeEEeccCCCCcccCcc
Q 023191 105 FRLDPEKWGVNVQSLSGSPSNFQVYTALLKP-------------------------------HDRIMALDLPHGGHLSHG 153 (286)
Q Consensus 105 ~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~-------------------------------Gd~Vl~~~~~~~~~~~~~ 153 (286)
||++. ++|...||+.|+++++.++++| ||+|+..+..+++|++.+
T Consensus 108 f~a~~----anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg 183 (493)
T PRK13580 108 FGAEH----AYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHG 183 (493)
T ss_pred hCCCc----ccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecC
Confidence 99988 5799999999999999999987 899999999999999887
Q ss_pred ccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCCCccCHHHHHHHHHhcCCEEEEeccc
Q 023191 154 YQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAH 232 (286)
Q Consensus 154 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n~g~~~~l~~I~~ia~~~~~~vivD~a~ 232 (286)
+ ...+.+..+...+++++.+++.+|++++++++++ +++.|+++ .+|++...|+++|.++|+++|+++++|+||
T Consensus 184 ~-----~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~-~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH 257 (493)
T PRK13580 184 F-----RPNISGKMFHQRSYGVDPDTGLLDYDEIAALARE-FKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAH 257 (493)
T ss_pred c-----ccchhhheeeeEecccCcccCccCHHHHHHHHhh-cCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECch
Confidence 5 3345565567777788867789999999999998 55555555 888888889999999999999999999999
Q ss_pred cccccccCCCC---CCCCcceEEEeCCCCCCCCCCceEEEEecchhhhhccC
Q 023191 233 ISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQG 281 (286)
Q Consensus 233 ~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~~ 281 (286)
++|.+..+... .++.++|++++|+||||+||+||++++++++.+.+.++
T Consensus 258 ~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~~a 309 (493)
T PRK13580 258 FAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDKG 309 (493)
T ss_pred hhceeccccchhhcCCCCCCcEEEeCChhhccCCCeEEEEecHHHHHHHhhC
Confidence 99999866643 44557999999999999999999999999988777544
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=277.74 Aligned_cols=252 Identities=67% Similarity=1.112 Sum_probs=212.3
Q ss_pred cccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (286)
+..++..++++++.+.++..++.+.|+|.++||++|+.+++++...+.++|.+|+|+.+++.+....+.+|+.+++.+++
T Consensus 12 ~~~~~~~d~~~~~~~~~~~~~~~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~ 91 (452)
T PTZ00094 12 NQSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALE 91 (452)
T ss_pred hhhHhhhCHHHHHHHHHHHHHHHcCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHH
Confidence 34467789999999999888888999999999999999999999999999999999999999999999999889999999
Q ss_pred HCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCC
Q 023191 104 AFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 183 (286)
Q Consensus 104 ~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d 183 (286)
+||+++++|..++.+++|+.++.+++.+++++||+|++.+.+|+++.+++...........+..+...+++++ .++.+|
T Consensus 92 lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~id 170 (452)
T PTZ00094 92 AFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN-EKGLID 170 (452)
T ss_pred HhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC-CCCCcC
Confidence 9999876543444455676699878999999999999999999999887653322222233333444555555 358999
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCC
Q 023191 184 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 263 (286)
Q Consensus 184 ~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp 263 (286)
++++++++++.+++++++..+++|...|+++|.++|+++|+++++|++|++|.+..+..+.++.++|++++|+||||+||
T Consensus 171 ~~~L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP 250 (452)
T PTZ00094 171 YDKLEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGP 250 (452)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCC
Confidence 99999999766788888766679999999999999999999999999999999988877666668999999999999999
Q ss_pred CceEEEEecchhh
Q 023191 264 RGAMIFFRKGVKE 276 (286)
Q Consensus 264 ~gG~l~~~~~~~~ 276 (286)
+||++++++++.+
T Consensus 251 ~Gg~l~~~~~~~~ 263 (452)
T PTZ00094 251 RSGLIFYRKKVKP 263 (452)
T ss_pred CceEEEEecccch
Confidence 9999999876544
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=246.16 Aligned_cols=246 Identities=54% Similarity=0.825 Sum_probs=197.5
Q ss_pred ccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 023191 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (286)
..++..+|++++.++.+..+++..++|.++++++|+.|++++..++.++|..++++.+++.+.+....+++.+++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~ 83 (416)
T PRK00011 4 DNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKEL 83 (416)
T ss_pred hhhhhcCHHHHHHHHHHHHHHhcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHH
Confidence 45688999999999988778889999999999999999999988887777777777777777777788888788999999
Q ss_pred CCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCH
Q 023191 105 FRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184 (286)
Q Consensus 105 ~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~ 184 (286)
+|++.. .|++++|+.++..++.++++|||+|++++++|++++....... ....|.++ +.++.+.+++.+|+
T Consensus 84 ~g~~~~----~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~---~~~~g~~~--~~~~~~~~~~~~d~ 154 (416)
T PRK00011 84 FGAEYA----NVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVN---FSGKLYNV--VSYGVDEETGLIDY 154 (416)
T ss_pred hCCCce----eeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccc---cccceeeE--eecCcCcccCCcCH
Confidence 999763 4878888777777889999999999999999988765433111 11223333 34445544688999
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCC
Q 023191 185 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPR 264 (286)
Q Consensus 185 e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~ 264 (286)
+++++++++++|++|+++.+++|...|+++|.++|+++|+++|+|++|+.|.+..+..+..+.++|++++|+||+|+||+
T Consensus 155 ~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~ 234 (416)
T PRK00011 155 DEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPR 234 (416)
T ss_pred HHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCC
Confidence 99999997658999999767788778999999999999999999999998876544333344468999999999999999
Q ss_pred ceEEEEec-chhhhhc
Q 023191 265 GAMIFFRK-GVKEINK 279 (286)
Q Consensus 265 gG~l~~~~-~~~~~~~ 279 (286)
||++++++ ++.+..+
T Consensus 235 gg~i~~~~~~~~~~l~ 250 (416)
T PRK00011 235 GGLILTNDEELAKKIN 250 (416)
T ss_pred ceEEEeCCHHHHHHHH
Confidence 99999964 6665544
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=244.21 Aligned_cols=243 Identities=58% Similarity=0.901 Sum_probs=199.8
Q ss_pred ccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC
Q 023191 29 VVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD 108 (286)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~ 108 (286)
+++++++..+.++...+++.++|.++++++++.|++++.+.+..+|..++++.++|++....+++++.+++++++++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~ 81 (402)
T cd00378 2 DVDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE 81 (402)
T ss_pred CcCHHHHHHHHHHHHHHHhCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC
Confidence 56889999999987778889999999999999999999998877787788888888888899999998999999999997
Q ss_pred CCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHH
Q 023191 109 PEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLE 188 (286)
Q Consensus 109 ~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~ 188 (286)
.. .|++++|+.++.+++.++++|||+|+++++.|+++...+... .+...|.+++.++++.+.+++.+|+++++
T Consensus 82 ~~----~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~id~~~l~ 154 (402)
T cd00378 82 YA----NVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFT---KVSASGKLFESVPYGVDPETGLIDYDALE 154 (402)
T ss_pred ce----eeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccc---cccccceeEEEecCCcCcccCCcCHHHHH
Confidence 63 477788877888899999999999999999988876543310 13345655666665544336899999999
Q ss_pred HHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEE
Q 023191 189 KSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 268 (286)
Q Consensus 189 ~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l 268 (286)
+.+.++++++|+++.+++|...++++|+++|++||+++|+|++|+.|.+..+..+.++.++|++++|+||||+||+||++
T Consensus 155 ~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i 234 (402)
T cd00378 155 KMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLI 234 (402)
T ss_pred HHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceEE
Confidence 99975589999988667888889999999999999999999999888765443333334689999999999999999999
Q ss_pred EEec-chhhhh
Q 023191 269 FFRK-GVKEIN 278 (286)
Q Consensus 269 ~~~~-~~~~~~ 278 (286)
++++ ++.+..
T Consensus 235 ~~~~~~~~~~l 245 (402)
T cd00378 235 LTRKGELAKKI 245 (402)
T ss_pred EeccHHHHHHH
Confidence 9987 665544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=244.04 Aligned_cols=244 Identities=51% Similarity=0.803 Sum_probs=201.3
Q ss_pred hccccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHH
Q 023191 22 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (286)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (286)
|+++.++..++++++.+.++..++.+.+||.++||+++|.+++++...+.++|..|+++.+.+++.+...+||+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~l 83 (416)
T PRK13034 4 FFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERA 83 (416)
T ss_pred hhhhhHhhhCHHHHHHHHHHHHHHhcCeeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHH
Confidence 55777889999999999999888889999999999999999999999987778888999999988888999998888899
Q ss_pred HHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCC
Q 023191 102 LEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY 181 (286)
Q Consensus 102 ~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 181 (286)
++++|.+. +.+.+.||+.|+.+++.++++|||+|++++..|.++...+.. ....+.....+.++.+..++.
T Consensus 84 a~l~g~~~----alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~ 154 (416)
T PRK13034 84 KQLFGCDY----ANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAK-----VSLSGKWYNAVQYGVDRLTGL 154 (416)
T ss_pred HHHhCCCc----eEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCc-----ceeccceeeeEEcccccccCC
Confidence 99999876 235567888899989999999999999999888774322210 011122222234455545678
Q ss_pred CCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCC
Q 023191 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLR 261 (286)
Q Consensus 182 ~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~ 261 (286)
+|++++++.+...++|+|++..+.+|...|+++|.++|++||+++++|+||+.|.+..+....++.++|++++|+||+++
T Consensus 155 ~d~~~le~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~ 234 (416)
T PRK13034 155 IDYDEVEELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLR 234 (416)
T ss_pred cCHHHHHHHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCC
Confidence 99999999986657899888656678888999999999999999999999999998877666565679999999999999
Q ss_pred CCCceEEEEecch
Q 023191 262 GPRGAMIFFRKGV 274 (286)
Q Consensus 262 gp~gG~l~~~~~~ 274 (286)
||.||+++++++.
T Consensus 235 g~~GG~v~~~~~~ 247 (416)
T PRK13034 235 GPRGGMILTNDEE 247 (416)
T ss_pred CCCCeEEEECcHH
Confidence 9999999987754
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=228.35 Aligned_cols=214 Identities=21% Similarity=0.245 Sum_probs=173.7
Q ss_pred ceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 49 LELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 49 i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
+-|+..-. ..|..|.+++.++....+ .+.+...+.......+..++.|+.+++++|+++. .+|++|.|+| ++.
T Consensus 24 vylD~aa~~~~p~~V~~a~~~~~~~~~--an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~---~eIvft~~tT~aln 98 (405)
T COG0520 24 VYLDNAATSQKPQAVLDAVAEYYRRYN--ANVHRGAHTLAEEATDLYEAAREAVARFLNADSS---DEIVFTRGTTEALN 98 (405)
T ss_pred EEecCcccccCCHHHHHHHHHHHHhhc--CCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC---CeEEEeCChhHHHH
Confidence 44443333 469999999998875522 2222212333455667888899999999999852 2599999999 666
Q ss_pred HHHHHh---cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 127 QVYTAL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 127 ~~l~a~---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
.+..++ +.+||+|++.+.+|+++..|+....+ ..|.+++.+| ++ +++.+|++++++.+++ +||+|.++
T Consensus 99 ~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~----~~Ga~v~~i~--~~-~~g~~~~~~~~~~i~~-~Tklvais~ 170 (405)
T COG0520 99 LVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAK----RTGAKVRVIP--LD-DDGLLDLDALEKLITP-KTKLVALSH 170 (405)
T ss_pred HHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHH----hcCcEEEEEe--cC-CCCCcCHHHHHHhcCC-CceEEEEEC
Confidence 577777 69999999999999999988874433 3465677776 44 6789999999999988 99999998
Q ss_pred CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
-|| +|.+.|+++|+++||++|++|++|++|++|+.+.++.... +|++++|+||||+||.| |++++|+++.+.+
T Consensus 171 vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~---~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l 245 (405)
T COG0520 171 VSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELG---CDFLAFSGHKWLLGPTGIGVLYVRKELLEEL 245 (405)
T ss_pred ccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcC---CCEEEEcccccccCCCceEEEEEchHHHhhc
Confidence 777 8899999999999999999999999999999999987777 99999999999999999 9999999877654
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=217.00 Aligned_cols=215 Identities=18% Similarity=0.217 Sum_probs=169.9
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.|+|..|++ ++|+.+++++.+++.+... .|+...+..+||+++.+++.+.+|++.+. ..+|++|+|++
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~-------~Y~~~~G~~~LReaia~~~~~~~~~~~~~-~~eiivt~Ga~~ 100 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGT-------HYTPSAGIPELREAIAEKYKRRYGLDVDP-EEEIIVTAGAKE 100 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhcccC-------CCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CCeEEEeCCHHH
Confidence 4899999988 6799999999998876211 23466899999999999999999864332 02599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.+++.++++|||+|++++ |.|+.|...+.+.|+++..+++....++|.+|+++|++++++ +||+|+++
T Consensus 101 al~~~~~a~~~pGDeVlip~--------P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~ 171 (393)
T COG0436 101 ALFLAFLALLNPGDEVLIPD--------PGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILNS 171 (393)
T ss_pred HHHHHHHHhcCCCCEEEEeC--------CCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEeC
Confidence 98889999999999999999 777777777889998887777533214799999999999999 99999998
Q ss_pred CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccC-CCCCCCC--c---ceEEEeCCCCCC--CCCCceEEEE
Q 023191 203 ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSPFE--Y---ADVVTTTTHKSL--RGPRGAMIFF 270 (286)
Q Consensus 203 ~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~~~~--~---~D~v~~s~~K~l--~gp~gG~l~~ 270 (286)
|+| ||.+. .+++|+++|++||++||+|++ +.+.+..+ .+.+.+. . .-+.+.|++|++ .|+|.|++++
T Consensus 172 P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEi-Y~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~ 250 (393)
T COG0436 172 PNNPTGAVYSKEELKAIVELAREHDIIIISDEI-YEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVG 250 (393)
T ss_pred CCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehh-hhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeec
Confidence 666 77444 588999999999999999999 45555544 2333332 1 237788999975 7888899999
Q ss_pred e-cchhhhhc
Q 023191 271 R-KGVKEINK 279 (286)
Q Consensus 271 ~-~~~~~~~~ 279 (286)
+ .++.+..+
T Consensus 251 ~~~~l~~~~~ 260 (393)
T COG0436 251 PPEELIAALR 260 (393)
T ss_pred ChHHHHHHHH
Confidence 9 66665544
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=204.40 Aligned_cols=238 Identities=16% Similarity=0.111 Sum_probs=181.5
Q ss_pred cccccccChHHHHHHHHHHHHHHcCce-ecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQWKGLE-LIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (286)
++.+....++++..+...... ....+ |.+|.+ ++|+.|.+++.+++.... ...|+...+.++|++++++.
T Consensus 9 ~~~l~~~~~~vw~e~~~la~e-~~~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~------~~qYt~~~G~p~L~~aL~k~ 81 (420)
T KOG0257|consen 9 NRNLSTSKPYVWTEINRLAAE-HKVPNPLGQGFPDFPPPKFVTEAAKNAAKEPS------TNQYTRGYGLPQLRKALAKA 81 (420)
T ss_pred cccccccCCcHHHHHHHHHHh-cCCCCcccCCCCCCCCcHHHHHHHHHHhccch------hccccccCCchHHHHHHHHH
Confidence 556677778889888876433 34555 888877 578899999988876632 22234445778899999999
Q ss_pred HHHHCCC--CCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc---
Q 023191 101 ALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR--- 174 (286)
Q Consensus 101 ~~~~~g~--~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--- 174 (286)
++.++|. +++ .+|++|+|+. ++..++++++++||+|++.+ |.|..|...+.++|...+.++..
T Consensus 82 ~se~~~~~~~~~---~eVlVT~GA~~ai~~~~~~l~~~GDeVii~e--------P~fd~Y~~~~~maG~tpv~v~~~~~~ 150 (420)
T KOG0257|consen 82 YSEFYGGLLDPD---DEVLVTAGANEAISSALLGLLNPGDEVIVFE--------PFFDCYIPQVVMAGGTPVFVPLKPKE 150 (420)
T ss_pred HHHHhccccCCc---ccEEEecCchHHHHHHHHHHcCCCCEEEEec--------CcchhhhhHHhhcCCcceeecccccc
Confidence 9998887 443 3699999999 88889999999999999999 66666666788999888888755
Q ss_pred --cCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCC---ccCHHHHHHHHHhcCCEEEEeccccccccccCCCC----
Q 023191 175 --LNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YAR---LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP---- 243 (286)
Q Consensus 175 --~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~---~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~---- 243 (286)
...++|.+|.++++.++++ +||+|++| |+| +|. ...+++|++||++||++||+|+++-.-..+...+.
T Consensus 151 g~~~s~~~~~D~~~le~~~t~-kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~as 229 (420)
T KOG0257|consen 151 GNVSSSDWTLDPEELESKITE-KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIAS 229 (420)
T ss_pred ccccCccccCChHHHHhhccC-CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeec
Confidence 1235799999999999999 99999998 777 774 45699999999999999999999654333322121
Q ss_pred CCCC-cceEEEeCCCCCC--CCCCceEEEEecchhhhhcc
Q 023191 244 SPFE-YADVVTTTTHKSL--RGPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 244 ~~~~-~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~~~~ 280 (286)
.|-. ...+-++|+.|+| .||+-|++++.+.+....++
T Consensus 230 lPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~ 269 (420)
T KOG0257|consen 230 LPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFP 269 (420)
T ss_pred CCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHH
Confidence 1111 2668899999987 67888999997766665553
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=197.61 Aligned_cols=199 Identities=20% Similarity=0.311 Sum_probs=161.4
Q ss_pred CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh--c
Q 023191 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--L 133 (286)
Q Consensus 57 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~--~ 133 (286)
++.++++++|..++...| |+|.+.+.-+ ....++-+..|+.+++++|++++ +|++|||++ ++.+++.+. .
T Consensus 12 p~~~~v~~~m~~~~~~~f--gNPsS~H~~G-~~A~~~ve~AR~~iA~llga~~~----eIiFTSG~TEsnNlaI~g~~~a 84 (386)
T COG1104 12 PVDPEVLEAMLPYLTEVF--GNPSSLHSFG-REARKAVEEAREQIAKLLGADPE----EIIFTSGATESNNLAIKGAALA 84 (386)
T ss_pred CCCHHHHHHHHHHHHhhc--CCccchhHhH-HHHHHHHHHHHHHHHHHhCCCCC----eEEEecCCcHHHHHHHHhhHHh
Confidence 678999999999998766 5555422222 33456667889999999999885 599999999 666566652 2
Q ss_pred ----CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CC
Q 023191 134 ----KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YA 207 (286)
Q Consensus 134 ----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g 207 (286)
..|.+|+++..+|+++..+...+.. .|.++..+| ++ .++.+|+++|++++++ +|.+|.+- .+| +|
T Consensus 85 ~~~~~~~~HIIts~iEH~aVl~~~~~Le~-----~g~~Vtyl~--V~-~~G~v~~e~L~~al~~-~T~LVSim~aNnE~G 155 (386)
T COG1104 85 YRNAQKGKHIITSAIEHPAVLNTCRYLER-----QGFEVTYLP--VD-SNGLVDLEQLEEALRP-DTILVSIMHANNETG 155 (386)
T ss_pred hhcccCCCeEEEcccccHHHHHHHHHHHh-----cCCeEEEeC--CC-CCCeEcHHHHHHhcCC-CceEEEEEecccCee
Confidence 2588999999999999887764422 344455565 55 5799999999999998 89888886 444 89
Q ss_pred CccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchh
Q 023191 208 RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (286)
Q Consensus 208 ~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (286)
+++|+++|.++|+++++++++|++|++|.++.++.... +|++.+|.|| |+||+| |++++++...
T Consensus 156 ~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~---vD~ls~SaHK-~~GpkGiGaLyv~~~~~ 220 (386)
T COG1104 156 TIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELG---VDLLSFSAHK-FGGPKGIGALYVRPGVR 220 (386)
T ss_pred ecccHHHHHHHHHHcCCeEEEehhhhcCceeccccccC---cceEEeehhh-ccCCCceEEEEECCCCc
Confidence 99999999999999999999999999999998887776 9999999999 999999 9999977543
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=199.15 Aligned_cols=205 Identities=18% Similarity=0.265 Sum_probs=154.6
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHH
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a 131 (286)
++..++|+.+++++.+++.+.+ +++....+.......++.+.+++.+++++|++++ +|++++|++ ++..++.+
T Consensus 6 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~----~v~~t~~~t~a~~~~l~~ 79 (364)
T PLN02651 6 QATTPIDPRVLDAMLPFLIEHF--GNPHSRTHLYGWESEDAVEKARAQVAALIGADPK----EIIFTSGATESNNLAIKG 79 (364)
T ss_pred cCCCCCCHHHHHHHHHHHHhCC--CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC----eEEEeCCHHHHHHHHHHH
Confidence 3445789999999988875533 2332100111122345566788999999999764 499999888 65545544
Q ss_pred h----cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 132 L----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 132 ~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
+ .++||+|++++.+|+++..++.. ....|.+++.++ .+ +++.+|++++++++++ ++++++++ ++|
T Consensus 80 ~~~~~~~~g~~vl~~~~~h~s~~~~~~~-----~~~~g~~v~~v~--~~-~~~~~d~~~l~~~i~~-~t~lv~v~~~~n~ 150 (364)
T PLN02651 80 VMHFYKDKKKHVITTQTEHKCVLDSCRH-----LQQEGFEVTYLP--VK-SDGLVDLDELAAAIRP-DTALVSVMAVNNE 150 (364)
T ss_pred HHHhccCCCCEEEEcccccHHHHHHHHH-----HHhcCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CcEEEEEECCCCC
Confidence 3 57899999999888886544331 123455565565 34 4678999999999987 89999987 555
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhh
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (286)
+|...|+++|.++||++|+++++|++|++|.++.++..++ +|++++|+||| +||.| |++++++++..
T Consensus 151 tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~---~D~~~~s~hK~-~gp~G~g~l~v~~~~~~ 218 (364)
T PLN02651 151 IGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLG---VDLMSISGHKI-YGPKGVGALYVRRRPRV 218 (364)
T ss_pred ceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCC---CCEEEechhhh-CCCCceEEEEEcCCCCC
Confidence 7889999999999999999999999999999887776665 99999999996 79999 99999987554
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=193.90 Aligned_cols=205 Identities=20% Similarity=0.304 Sum_probs=162.9
Q ss_pred cCceecCCC-CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 47 KGLELIPSE-NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 47 ~~i~L~~~e-~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
+.+.|+.+- .++++.|.++|.+++...+ ++|..+.| +.+..+. -++.|+.+++++|+++. +|+||+|+| +
T Consensus 43 ~~vyld~~at~p~~~~Vldam~~~~~~~~--~nPh~~~y-~w~~~~~-~E~aR~~VAklInAd~~----dIiFts~ATEs 114 (428)
T KOG1549|consen 43 RPVYLDNQATGPMDPRVLDAMLPYLLEYL--GNPHSRSY-GWKAEDA-VEAAREQVAKLINADPS----DIVFTSGATES 114 (428)
T ss_pred ccEEEecCcCCCCCHHHHHHHHHHHHHhh--cCCCcccc-chhhhHH-HHHHHHHHHHHhCCCCC----cEEEeCCchHH
Confidence 456666544 3789999999999887755 55655422 2222222 34678999999999986 499999999 6
Q ss_pred HHHHHHHh-cCCCC----eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEE
Q 023191 125 NFQVYTAL-LKPHD----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (286)
Q Consensus 125 ~~~~l~a~-~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v 199 (286)
+-+++..+ ...+| +|++.+.+|+.....+..+.. .|..++.+| ++ +++.+|++.+++.|++ +|++|
T Consensus 115 ~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~-----~g~~Vt~lp--v~-~~~~~d~~~~~~~i~~-~T~lv 185 (428)
T KOG1549|consen 115 NNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQE-----EGLEVTYLP--VE-DSGLVDISKLREAIRS-KTRLV 185 (428)
T ss_pred HHHHHHHhhccccccccceEEEecccCcchhHHHHHHHh-----cCeEEEEec--cC-ccccccHHHHHHhcCC-CceEE
Confidence 66688888 56777 999999999998766554333 333455555 54 6789999999999999 99999
Q ss_pred EEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEec
Q 023191 200 VAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRK 272 (286)
Q Consensus 200 ~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~ 272 (286)
.+. -+| .|...|+++|.++|++.++.+++|+||+.|.++.|+.... +|++++++|||+ ||+| |+|+++.
T Consensus 186 ~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln---~D~~s~s~HK~y-gp~~iGaLYvr~ 257 (428)
T KOG1549|consen 186 SIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELN---ADFLSISAHKIY-GPPGIGALYVRR 257 (428)
T ss_pred EEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcC---chheeeeccccc-CCCcceEEEEcc
Confidence 997 444 7799999999999999999999999999999999998888 999999999966 6777 9999996
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=196.00 Aligned_cols=211 Identities=19% Similarity=0.240 Sum_probs=162.9
Q ss_pred cCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHH
Q 023191 52 IPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYT 130 (286)
Q Consensus 52 ~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~ 130 (286)
+++..++|+.|++++.+.+.+.+ +++....+.......++.+.+++.+++++|+++++ +|++++|++ ++..++.
T Consensus 5 ~~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~---~v~~~~~~t~a~~~~~~ 79 (371)
T PF00266_consen 5 NAGTGPMPKSVLEAISDYLRNFY--ANPHSGVSHRSREFAEILEEAREALAKLLGAPPDE---EVVFTSNGTEALNAVAS 79 (371)
T ss_dssp TSSS-B-BHHHHHHHHHHHHHSG--SSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTE---EEEEESSHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhh--hcCcccccchhhhhhHHHHHHHHHHHHhcCCcccc---ccccccccchhhhhhhh
Confidence 34556789999999998876544 22211112223445677778999999999998732 589989988 7777888
Q ss_pred Hh---cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-C-CC
Q 023191 131 AL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A-SA 205 (286)
Q Consensus 131 a~---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~-~n 205 (286)
++ +++||+|++.+.+|++...++.... ...|.+++.++.+ .++.+|++++++.+++ +|++|.++ . +.
T Consensus 80 ~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~----~~~g~~v~~i~~~---~~~~~~~~~~~~~l~~-~~~lv~~~~~~~~ 151 (371)
T PF00266_consen 80 SLLNPLKPGDEVLVTSNEHPSNRYPWEEIA----KRKGAEVRVIPAD---PGGSLDLEDLEEALNP-DTRLVSISHVENS 151 (371)
T ss_dssp HHHHHGTTTCEEEEEESSHHHHHHHHHHHH----HHTTEEEEEEEEG---TTSSCSHHHHHHHHHT-TESEEEEESBETT
T ss_pred cccccccccccccccccccccccccccccc----ccchhhhcccccc---ccchhhhhhhhhhhcc-ccceEEeeccccc
Confidence 88 8999999999999988865544222 2446666667643 4578999999999987 99999997 3 34
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+|...|+++|.++||++++++++|++|++|..+.++.... +|++++|+|| |+||+| |++++++++.+-.+
T Consensus 152 tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~---~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~ 222 (371)
T PF00266_consen 152 TGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELG---ADFLVFSSHK-LGGPPGLGFLYVRPEAIERLR 222 (371)
T ss_dssp TTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTT---ESEEEEESTS-TTSSSTEEEEEEEHHHHHHHH
T ss_pred ccEEeeeceehhhhhccCCceeEechhccccccccccccc---cceeeecccc-cCCCCchhhheehhhhhhccc
Confidence 8899999999999999999999999999999998887776 9999999999 999999 99999998765553
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=197.17 Aligned_cols=213 Identities=18% Similarity=0.218 Sum_probs=159.9
Q ss_pred CceecC-CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC-CCCCcceeEEeCCChH-H
Q 023191 48 GLELIP-SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~-~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~v~~~sG~~-a 124 (286)
.+.|+. +..++|+.+.+++.+++.+.+ +++....+.......+..+.+|+.+++++|+ +++ +|++++|++ +
T Consensus 20 ~~yld~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~----~i~~~~~~t~~ 93 (401)
T PRK10874 20 GVYLDSAATALKPQAVIEATQQFYSLSA--GNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAK----NIVWTRGTTES 93 (401)
T ss_pred eEEEeCCcccCCCHHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCC----EEEEECCHHHH
Confidence 456654 344789999999998886533 2222111111233455666788999999999 553 599999999 7
Q ss_pred HHHHHHHh----cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 125 NFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 125 ~~~~l~a~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
+.+++.++ +++||+|++++++|++.+.++.. .+...|.+++.++. + +++.+|++++++.+++ +|++|+
T Consensus 94 i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~----~~~~~g~~v~~v~~--~-~~~~~d~~~l~~~i~~-~t~lv~ 165 (401)
T PRK10874 94 INLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLM----VAQQTGAKVVKLPL--G-ADRLPDVDLLPELITP-RTRILA 165 (401)
T ss_pred HHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHH----HHHHhCCEEEEEec--C-CCCcCCHHHHHHhcCc-CcEEEE
Confidence 76677777 47999999999888875443321 22345666666664 3 4578999999999987 999999
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
++ ++| +|...|+++|.++|+++|+++++|++|+.|.++.++.... +|++++|+|| +.||.| |++++++++.+.
T Consensus 166 i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~---~d~~~~s~~K-~~gp~G~G~l~~~~~~~~~ 241 (401)
T PRK10874 166 LGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALD---IDFYAFSGHK-LYGPTGIGVLYGKSELLEA 241 (401)
T ss_pred EeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcC---CCEEEEeccc-ccCCCccEEEEEchHHHhc
Confidence 98 666 8889999999999999999999999999888776554443 9999999999 558988 999999876554
Q ss_pred h
Q 023191 278 N 278 (286)
Q Consensus 278 ~ 278 (286)
.
T Consensus 242 ~ 242 (401)
T PRK10874 242 M 242 (401)
T ss_pred C
Confidence 3
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=194.34 Aligned_cols=202 Identities=18% Similarity=0.258 Sum_probs=150.9
Q ss_pred CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCC
Q 023191 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKP 135 (286)
Q Consensus 57 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~ 135 (286)
++|+.+++++.+.+.+.. +.++...|..........+.+++.+++++|++..+ +|++++|++ ++..++.+++++
T Consensus 11 ~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---~v~~~~g~t~al~~~~~~~~~~ 85 (376)
T TIGR01977 11 PKPDEVYEAMADFYKNYG--GSPGRGRYRLALRASREVEETRQLLAKLFNAPSSA---HVVFTNNATTALNIALKGLLKE 85 (376)
T ss_pred CCCHHHHHHHHHHHHhcC--CCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCC---eEEEeCCHHHHHHHHHHhccCC
Confidence 468899999988776521 11111111111122344556778999999986532 599998888 777788889999
Q ss_pred CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHH
Q 023191 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYE 213 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~ 213 (286)
||+|+++.++|+++..+... .+...|.+++.++ .+ .++.+|++++++.+++ +|++|+++ ++| +|...|++
T Consensus 86 gd~vl~~~~~~~~~~~~~~~----~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~~ 157 (376)
T TIGR01977 86 GDHVITTPMEHNSVARPLEC----LKEQIGVEITIVK--CD-NEGLISPERIKRAIKT-NTKLIVVSHASNVTGTILPIE 157 (376)
T ss_pred CCEEEECcchhhHHHHHHHH----HHHHcCcEEEEEe--cC-CCCCcCHHHHHHhcCC-CCeEEEEECCCCCccccCCHH
Confidence 99999999888776543221 1223355555554 44 4578999999999987 89999997 666 78999999
Q ss_pred HHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 214 RIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 214 ~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
+|.++|+++|+++|+|++|++|..+.++.... +|++++|+|||++||.| |+++++++.
T Consensus 158 ~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~---~D~~~~s~~K~l~~p~g~g~l~~~~~~ 216 (376)
T TIGR01977 158 EIGELAQENGIFFILDAAQTAGVIPIDMTELA---IDMLAFTGHKGLLGPQGTGGLYIREGI 216 (376)
T ss_pred HHHHHHHHcCCEEEEEhhhccCccCCCchhcC---CCEEEecccccccCCCCceEEEEcCCc
Confidence 99999999999999999999998877765554 99999999999999999 988888764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=197.18 Aligned_cols=212 Identities=16% Similarity=0.154 Sum_probs=158.4
Q ss_pred CceecC-CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC-CCCCcceeEEeCCChH-H
Q 023191 48 GLELIP-SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~-~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~v~~~sG~~-a 124 (286)
.+-|+. +..++|+.+++++.+++...+ +++....+.......+..+.+|+.+++++|. +++ +|++|+|++ +
T Consensus 24 ~iYld~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~----~v~~t~g~t~~ 97 (406)
T PRK09295 24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKMENVRKQAALFINARSAE----ELVFVRGTTEG 97 (406)
T ss_pred eEEEeCcccccCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCC----eEEEeCCHHHH
Confidence 356653 444789999999988876433 1211111111122345555688999999998 443 599999999 6
Q ss_pred HHHHHHH----hcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 125 NFQVYTA----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 125 ~~~~l~a----~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
+..++.+ ++++||+|++++++|++...++... +...|.+++.++ .+ .++.+|++++++++++ +|++|+
T Consensus 98 l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~----~~~~g~~v~~v~--~~-~~~~~d~~~l~~~i~~-~t~lv~ 169 (406)
T PRK09295 98 INLVANSWGNSNVRAGDNIIISEMEHHANIVPWQML----CARVGAELRVIP--LN-PDGTLQLETLPALFDE-RTRLLA 169 (406)
T ss_pred HHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHH----HHHcCcEEEEEe--cC-CCCCCCHHHHHHhcCC-CcEEEE
Confidence 6656665 4689999999999988775554322 234566666665 34 4578999999999987 899999
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
++ ++| +|...|+++|.++|+++|+++++|++|+.|..+.++.... +|++++|+|| +.||.| |++++++++.+.
T Consensus 170 l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~---~D~~~~s~~K-~~gp~G~G~l~~~~~~~~~ 245 (406)
T PRK09295 170 ITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALD---CDFYVFSGHK-LYGPTGIGILYVKEALLQE 245 (406)
T ss_pred EecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcC---CCEEEeehhh-ccCCCCcEEEEEchHhHhh
Confidence 98 666 8899999999999999999999999999998876665444 9999999999 668999 999999876543
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=190.83 Aligned_cols=204 Identities=16% Similarity=0.087 Sum_probs=154.5
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
++|++|+.+.|+.+.+++.+.+... .+ ....++.+.+++.+++++|++.+. .+++++|++ ++..
T Consensus 1 ~~~~~~~~~~~~~v~~a~~~~~~~~---~~---------~~~~~~~~~~~~~la~~~g~~~~~---~~~~~~~~t~al~~ 65 (356)
T cd06451 1 LLLIPGPSNVPPRVLKAMNRPMLGH---RS---------PEFLALMDEILEGLRYVFQTENGL---TFLLSGSGTGAMEA 65 (356)
T ss_pred CcccCCCcCCCHHHHHHhCCCccCC---CC---------HHHHHHHHHHHHHHHHHhcCCCCC---EEEEecCcHHHHHH
Confidence 4788999999999999997654321 01 234456667889999999995543 366666655 8777
Q ss_pred HHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 128 ~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
++.+++++||+|+++++.|.+.. +...+...|.+++.++ .+ +++.+|++++++.+++++|++|+++ ++|
T Consensus 66 ~~~~~~~~g~~vl~~~~~~~~~~------~~~~~~~~g~~~~~v~--~~-~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~ 136 (356)
T cd06451 66 ALSNLLEPGDKVLVGVNGVFGDR------WADMAERYGADVDVVE--KP-WGEAVSPEEIAEALEQHDIKAVTLTHNETS 136 (356)
T ss_pred HHHHhCCCCCEEEEecCCchhHH------HHHHHHHhCCCeEEee--cC-CCCCCCHHHHHHHHhccCCCEEEEeccCCC
Confidence 88899999999999886554421 1113345566666665 44 3578999999999976589999997 555
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+|...|+++|.++|+++|+++++|++|++|..+.+.... ++|++++|+||||++|.| |+++.++++.+..+
T Consensus 137 ~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~---~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~ 208 (356)
T cd06451 137 TGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEW---GVDVAYTGSQKALGAPPGLGPIAFSERALERIK 208 (356)
T ss_pred cccccCHHHHHHHHHhcCCEEEEeeehhccCcccccccc---CccEEEecCchhccCCCCcceeEECHHHHHHHH
Confidence 778899999999999999999999999988765444333 489999999999999988 99999988765544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-24 Score=195.05 Aligned_cols=213 Identities=18% Similarity=0.166 Sum_probs=157.5
Q ss_pred CceecC-CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC-CCCcceeEEeCCChH-H
Q 023191 48 GLELIP-SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~-~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~v~~~sG~~-a 124 (286)
.+-|+. +..++|+.+++++.+++...+ +++....+.......+..+.+|+.+++++|++ ++ +|++|+|++ +
T Consensus 17 ~iyld~a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~----~i~~t~g~t~~ 90 (398)
T TIGR03392 17 TVYLDSAATALKPQAVIDATQQFYRLSS--GTVHRSQHQQAQSLTARYELARQQVARFLNAPDAE----NIVWTRGTTES 90 (398)
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCC----eEEEeCChHHH
Confidence 456654 344789999999988875422 22221111122233455667889999999995 43 599999999 7
Q ss_pred HHHHHHHh----cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 125 NFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 125 ~~~~l~a~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
+..++.++ +++||+|++++++|++...++.. .+...|.+++.+++ + .++.+|++++++++++ +|++|+
T Consensus 91 l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~----~~~~~g~~v~~v~~--~-~~~~~~~~~l~~~i~~-~t~lv~ 162 (398)
T TIGR03392 91 INLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLM----VAQQTGAKVVKLPI--G-ADLLPDIRQLPELLTP-RTRILA 162 (398)
T ss_pred HHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHH----HHHHcCcEEEEEec--C-CCCCcCHHHHHHHhcc-CceEEE
Confidence 77677777 58999999999888875433321 22345666666653 4 4577899999999987 899999
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
++ ++| +|...|+++|.++|+++|+++++|++|+.|....++.... +|++++|+|| +.||.| |++++++++.+.
T Consensus 163 i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~---~d~~~~s~~K-~~gp~G~G~l~~~~~~~~~ 238 (398)
T TIGR03392 163 LGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALD---IDFYAFSGHK-LYGPTGIGVLYGKTELLEA 238 (398)
T ss_pred EECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcC---CCEEEEeccc-ccCCCceEEEEEcHHHHhh
Confidence 87 666 8889999999999999999999999998887765554333 8999999999 557888 999999876543
Q ss_pred h
Q 023191 278 N 278 (286)
Q Consensus 278 ~ 278 (286)
.
T Consensus 239 ~ 239 (398)
T TIGR03392 239 M 239 (398)
T ss_pred C
Confidence 3
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=191.41 Aligned_cols=204 Identities=15% Similarity=0.134 Sum_probs=158.2
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
+.+++|....++.|++++...+.. + . .....++.+.+++++++++|++.++ .++++++++ ++..
T Consensus 11 ~l~~pGP~~~~~~V~~a~~~~~~~-~----------~-~~~~~~~~~~~~~~l~~~~g~~~~~---~vi~~~~gt~a~~~ 75 (401)
T PLN02409 11 HLFVPGPVNIPERVLRAMNRPNED-H----------R-SPAFPALTKELLEDVKYIFKTKSGT---PFIFPTTGTGAWES 75 (401)
T ss_pred eeccCCCCCCCHHHHHHhcCCCCC-C----------C-CHHHHHHHHHHHHHHHHHhCCCCCC---EEEEeCCcHHHHHH
Confidence 456778778899999999765432 1 0 2456778889999999999997643 466666666 7777
Q ss_pred HHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh---cCCcEEEEc-C
Q 023191 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVAG-A 203 (286)
Q Consensus 128 ~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~tk~v~i~-~ 203 (286)
++..+++|||+|+++++.|.+.. + ...++..|.+++.++. + .+..+|++++++.+++ +++|+|+++ +
T Consensus 76 a~~~~~~~Gd~Vlv~~~~~~~~~--~----~~~~~~~g~~v~~v~~--~-~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~ 146 (401)
T PLN02409 76 ALTNTLSPGDKVVSFRIGQFSLL--W----IDQMQRLNFDVDVVES--P-WGQGADLDILKSKLRQDTNHKIKAVCVVHN 146 (401)
T ss_pred HHHhcCCCCCEEEEeCCCchhHH--H----HHHHHHcCCceEEEEC--C-CCCCCCHHHHHHHHhhCcCCCccEEEEEee
Confidence 88888999999999996554431 1 1123455666766663 3 2345899999999985 378999987 5
Q ss_pred CC-CCCccCHHHHHHH--HHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 204 SA-YARLYDYERIRKV--CNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 204 ~n-~g~~~~l~~I~~i--a~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+| +|...|+++|.++ |+++|+++++|++|++|..+.+...++ +|++++|+||||++|.| |++++++++.+..+
T Consensus 147 ~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~---~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~ 223 (401)
T PLN02409 147 ETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWG---VDVALTGSQKALSLPTGLGIVCASPKALEASK 223 (401)
T ss_pred cccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccC---ccEEEEcCccccCcCCCcceeEECHHHHHHHh
Confidence 55 8899999999999 999999999999999998877766665 99999999999999999 99999988765544
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=191.46 Aligned_cols=211 Identities=15% Similarity=0.100 Sum_probs=155.2
Q ss_pred cCceecCCC--CCCCHHHHHHhccccccCCCCCCCCC-cccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 47 KGLELIPSE--NFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e--~~~~~~v~~a~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
+.|||.+-+ .++++.+++++.++... + +.++. .+..+ .......+.+++.+++++|++. +.+++|++
T Consensus 19 ~~~~~~~~~~~~p~~~~~~~a~~~~~~~-~--~~~~~~~~~~~-~~~~~~~~~l~~~lA~~~g~~~------~~~~~g~t 88 (387)
T PRK09331 19 EFINLDPIQRGGILTPEARKALIEYGDG-Y--SVCDYCPGRLD-QIKKPPIADFHEDLAEFLGMDE------ARVTHGAR 88 (387)
T ss_pred cccccChhhcCCCCCHHHHHHHHHHHhc-c--CCCcccccccc-cccChHHHHHHHHHHHHhCCCc------EEEeCCHH
Confidence 457876543 37899999999987743 2 12111 00111 1112234456688999999864 66788888
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc------CC
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF------RP 196 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~------~t 196 (286)
++.+++.+++++||+|++..+.|.+... .+...|.+++.++...+ +++.+|++++++.+++. ++
T Consensus 89 ~a~~~al~~l~~~gd~Vlv~~~~h~s~~~--------~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~ 159 (387)
T PRK09331 89 EGKFAVMHSLCKKGDYVVLDGLAHYTSYV--------AAERAGLNVREVPKTGY-PEYKITPEAYAEKIEEVKEETGKPP 159 (387)
T ss_pred HHHHHHHHHhcCCCCEEEECCCchHHHHH--------HHHHcCCEEEEEeCccC-cCCCcCHHHHHHHHHHhhhccCCCC
Confidence 8888999999999999999877666542 23456766666654213 46789999999998752 68
Q ss_pred cEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 197 KLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 197 k~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
++|+++ +++ +|...|+++|+++|+++|+++++|++|+.|..+.+.... ++|++++|+|||+++|.+ |+++++++
T Consensus 160 ~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~---g~D~~~~s~~K~l~~~~~~G~l~~~~~ 236 (387)
T PRK09331 160 ALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKL---GADFIVGSGHKSMAASAPSGVLATTEE 236 (387)
T ss_pred EEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHc---CCCEEEeeCcccccCCCCEEEEEECHH
Confidence 999987 555 789999999999999999999999999998766554433 389999999999988877 99999988
Q ss_pred hhhhhc
Q 023191 274 VKEINK 279 (286)
Q Consensus 274 ~~~~~~ 279 (286)
+.+...
T Consensus 237 ~i~~~~ 242 (387)
T PRK09331 237 YADKVF 242 (387)
T ss_pred HHhhcc
Confidence 666543
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-24 Score=190.33 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=152.6
Q ss_pred CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL 132 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~ 132 (286)
+..++|+.+++++.+.+...+ +.++.+.+.......++.+.+++.+++++|++++ +|++++|++ ++..++.++
T Consensus 6 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~----~v~~~~g~t~a~~~~l~~l 79 (353)
T TIGR03235 6 ATTPIDPAVAEAMLPWLLEEF--GNPSSRTHEFGHNAKKAVERARKQVAEALGADTE----EVIFTSGATESNNLAILGL 79 (353)
T ss_pred CCCCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC----eEEEeCCHHHHHHHHHHHH
Confidence 445789999999988875433 2333211111112334556788999999999875 499999988 777677777
Q ss_pred c----CCC-CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 133 L----KPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 133 ~----~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
. ++| +.|++...+|+++..++.. ....|.+++.++ .+ +++.+|++++++.+++ ++++|+++ ++|
T Consensus 80 ~~~~~~~g~~~vi~~~~~~~s~~~~~~~-----~~~~G~~v~~v~--~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~ 150 (353)
T TIGR03235 80 ARAGEQKGKKHIITSAIEHPAVLEPIRA-----LERNGFTVTYLP--VD-ESGRIDVDELADAIRP-DTLLVSIMHVNNE 150 (353)
T ss_pred HHhcccCCCCeeeEcccccHHHHHHHHH-----HHhcCCEEEEEc--cC-CCCcCCHHHHHHhCCC-CCEEEEEEcccCC
Confidence 5 356 7899988888887655432 123455565555 44 4578999999999987 89999887 555
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
+|...|+++|.++|+++|+++++|++|+.|.+..++..+. +|++++|+||| +||.| |+++++++.
T Consensus 151 tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~---~D~~~~s~~K~-~gp~g~g~l~~~~~~ 216 (353)
T TIGR03235 151 TGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADR---IDLISCSGHKI-YGPKGIGALVIRKRG 216 (353)
T ss_pred ceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccC---CCEEEeehhhc-CCCCceEEEEEccCc
Confidence 7889999999999999999999999999999887766554 99999999997 58988 999999874
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=192.10 Aligned_cols=212 Identities=16% Similarity=0.139 Sum_probs=154.7
Q ss_pred CceecCCC-CCCCHHHHHHhccccccCCCCCCCCC-cccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 48 GLELIPSE-NFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~~e-~~~~~~v~~a~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
.+.|+.+. .++|+.+++++.+.+...+ +.+.. .++.. ....+..+.+|+.+++++|++.++ +|++|+|++ +
T Consensus 33 ~iyLd~a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~r~~la~~~~~~~~~---~v~~t~g~t~a 106 (424)
T PLN02855 33 LVYLDNAATSQKPAAVLDALQDYYEEYN--SNVHRGIHALS-AKATDAYELARKKVAAFINASTSR---EIVFTRNATEA 106 (424)
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcC--CCCCCccchHH-HHHHHHHHHHHHHHHHHcCCCCCC---EEEEeCCHHHH
Confidence 35565443 3678999999988775422 11111 11111 122234456789999999995322 599999999 6
Q ss_pred HHHHHHH----hcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 125 NFQVYTA----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 125 ~~~~l~a----~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
+..++.+ .+++||+|++++++|++.+.++.. .+...|.+++.++ ++ .++.+|++++++.+++ +|++|+
T Consensus 107 l~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~----~a~~~g~~v~~v~--~~-~~~~~~~~~l~~~i~~-~t~lv~ 178 (424)
T PLN02855 107 INLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQL----VAQKTGAVLKFVG--LT-PDEVLDVEQLKELLSE-KTKLVA 178 (424)
T ss_pred HHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHH----HHHHcCCEEEEEe--cC-CCCCcCHHHHHHHhcc-CceEEE
Confidence 6656665 468999999999998876544321 1234565566665 33 3456999999999987 999999
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
++ ++| +|...|+++|.++|+++|+++++|++|+.|..+.++.... +|++++|+|| ++||.| |++++++++.+.
T Consensus 179 i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~---~d~~~~s~~K-~~gp~G~G~l~~~~~~~~~ 254 (424)
T PLN02855 179 THHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLG---ADFLVASSHK-MCGPTGIGFLWGKSDLLES 254 (424)
T ss_pred EeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcC---CCEEEeeccc-ccCCCccEEEEEchhhhhc
Confidence 97 666 8899999999999999999999999999887766655444 8999999999 678988 999999876543
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=189.61 Aligned_cols=202 Identities=18% Similarity=0.312 Sum_probs=153.5
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHH
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a 131 (286)
++..++|+.+++++.+++...+ ++++.. +.......++.+++++++++++|++++ +|++++|++ ++.+++.+
T Consensus 6 aa~~~~~~~v~~a~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~r~~la~~~g~~~~----~i~~t~~~t~a~~~al~~ 78 (379)
T TIGR03402 6 NATTRVDPEVLEAMLPYFTEYF--GNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPD----EIIFTSGGTESDNTAIKS 78 (379)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--CCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCC----eEEEeCcHHHHHHHHHHH
Confidence 3455789999999998876532 443321 111122345566788999999999864 499999888 77667766
Q ss_pred hc---CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-C
Q 023191 132 LL---KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-Y 206 (286)
Q Consensus 132 ~~---~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~ 206 (286)
++ .+||+|++...+|+++..++.. ....|.+++.++ .+ +++.+|++++++.+++ ++++++++ ++| +
T Consensus 79 ~~~~~~~~~~vv~~~~~~~s~~~~~~~-----~~~~G~~v~~v~--~~-~~g~~~~~~l~~~i~~-~~~lv~i~~~~n~t 149 (379)
T TIGR03402 79 ALAAQPEKRHIITTAVEHPAVLSLCQH-----LEKQGYKVTYLP--VD-EEGRLDLEELRAAITD-DTALVSVMWANNET 149 (379)
T ss_pred HHHhcCCCCeEEEcccccHHHHHHHHH-----HHHcCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CcEEEEEEcccCCe
Confidence 53 5678999999888877554431 122465566665 34 4578999999999987 89999887 666 7
Q ss_pred CCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 207 g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
|...|+++|.++|+++|+++++|++|+.|..+.++.... +|++++|+|| ++||.| |+++++++.
T Consensus 150 G~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~---~D~~~~s~~K-~~gp~G~g~l~v~~~~ 214 (379)
T TIGR03402 150 GTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMN---IDMLSLSGHK-LHGPKGVGALYIRKGT 214 (379)
T ss_pred eecccHHHHHHHHHHcCCEEEEECcccccccccCcccCC---CCEEEEcHHH-cCCCCceEEEEECCCC
Confidence 799999999999999999999999999998877766555 9999999999 779999 999998764
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=190.15 Aligned_cols=213 Identities=20% Similarity=0.240 Sum_probs=156.6
Q ss_pred ceec-CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 49 LELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 49 i~L~-~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
+.|+ ++..++|+.+++++.+.+.... ..++. .|....+..++.+.+++.+++++|++.+ +|++++|++ ++.
T Consensus 19 ~yl~~~~~~~~p~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~ia~~~~~~~~----~v~~~~~~t~~l~ 91 (397)
T TIGR01976 19 VFFDNPAGTQIPQSVADAVSAALTRSN--ANRGG-AYESSRRADQVVDDAREAVADLLNADPP----EVVFGANATSLTF 91 (397)
T ss_pred EEecCCccCCCCHHHHHHHHHHHHhcC--CCCCC-CchHHHHHHHHHHHHHHHHHHHcCCCCC----eEEEeCCHHHHHH
Confidence 5554 4455789999999998875421 11111 1222344556677888999999998764 499999988 655
Q ss_pred HHHHHh---cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 127 QVYTAL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 127 ~~l~a~---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
.++.++ ++|||+|++++++|.++..++.. .+...|.+++.++ .+.+++.+|++++++.+++ +|++|+++
T Consensus 92 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~----~~~~~g~~~~~~~--~~~~~~~~~~~~l~~~i~~-~~~lv~i~~ 164 (397)
T TIGR01976 92 LLSRAISRRWGPGDEVIVTRLDHEANISPWLQ----AAERAGAKVKWAR--VDEATGELHPDDLASLLSP-RTRLVAVTA 164 (397)
T ss_pred HHHHHHHhcCCCCCEEEEcCCchHhHHHHHHH----HHHhcCCEEEEEe--ccccCCCcCHHHHHHhcCC-CceEEEEeC
Confidence 455554 68999999999888776543311 2334566666665 4433578999999999987 89999997
Q ss_pred CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
++| +|...|+++|.++|++||+++++|++|+.|....++.... +|++++|+|||+ ||+.|++++++++.+..+
T Consensus 165 ~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~---~d~~~~s~~K~~-g~~~G~l~~~~~~~~~l~ 238 (397)
T TIGR01976 165 ASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATG---ADFLTCSAYKFF-GPHMGILWGRPELLMNLP 238 (397)
T ss_pred CCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcC---CCEEEEechhhc-CCceEEEEEcHHHHhhCC
Confidence 666 8888999999999999999999999998776554444333 899999999987 677899999987665443
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=188.98 Aligned_cols=213 Identities=19% Similarity=0.194 Sum_probs=155.4
Q ss_pred CceecCC-CCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 48 GLELIPS-ENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 48 ~i~L~~~-e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
.+-|+.+ .+++|+.+.+++.+.+...+ +.+....+.......+..+.+++.+++++|++..+ +|++++|++ ++
T Consensus 19 ~~yld~~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~---~v~~~~g~t~~l 93 (403)
T TIGR01979 19 LVYLDSAATSQKPQQVIDAVAEYYRNSN--ANVHRGIHTLSVRATEAYEAVREKVAKFINAASDE---EIVFTRGTTESI 93 (403)
T ss_pred eEEEeCccccCCCHHHHHHHHHHHHhCC--CCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCC---eEEEeCCHHHHH
Confidence 3556544 44788999999988776533 22211001111122334456778999999997322 599999999 66
Q ss_pred HHHHHHh----cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 126 FQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 126 ~~~l~a~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
.+++.++ +++||+|++++++|++...++.. .+...|.+++.++ .+ +++.+|++++++.+++ +|++|++
T Consensus 94 ~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~----~~~~~g~~~~~v~--~~-~~~~~~~~~l~~~i~~-~~~lv~~ 165 (403)
T TIGR01979 94 NLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQL----LAERTGATLKFIP--LD-DDGTLDLDDLEKLLTE-KTKLVAI 165 (403)
T ss_pred HHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHH----HHHhcCcEEEEEe--cC-CCCCCCHHHHHHHhcc-CCeEEEE
Confidence 5566664 68999999999988876543321 2234566666665 44 5678999999999987 8999998
Q ss_pred c-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 202 G-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 202 ~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
+ ++| +|...|+++|.++|+++|+++++|++|+.|..+.++.... +|++++|+||++ ||.| |++++++++.+.
T Consensus 166 ~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~---~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~ 240 (403)
T TIGR01979 166 THVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALD---CDFYVFSGHKMY-GPTGIGVLYGKEELLEQ 240 (403)
T ss_pred EcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccC---CCEEEEeccccc-CCCCceEEEEchHHHhc
Confidence 7 666 7899999999999999999999999999987766554444 999999999965 7888 999998876543
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=190.22 Aligned_cols=207 Identities=19% Similarity=0.251 Sum_probs=152.3
Q ss_pred ceecC-CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 49 LELIP-SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 49 i~L~~-~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
+-|+. +..++++.+++++.+++...+ +.+....+.......+..+.+++.+++++|++++ +|++++|++ ++.
T Consensus 5 ~yld~aa~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~----~v~~~~g~t~a~~ 78 (402)
T TIGR02006 5 IYLDYAATTPVDPRVAEKMMPYLTEKF--GNPASRSHSFGWEAEEAVENARNQVAELIGADSR----EIVFTSGATESNN 78 (402)
T ss_pred EEeeCCcCCCCCHHHHHHHHHHHHhcC--CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC----eEEEeCCHHHHHH
Confidence 34443 344789999999988775433 2222111111111234556678999999999774 499999998 766
Q ss_pred HHHHHh----cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 127 QVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 127 ~~l~a~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
.++.++ .++||+|+++.++|+++..++.. +...|.+++.++ .+ +++.+|++++++.+++ ++++|+++
T Consensus 79 ~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~-----~~~~g~~v~~v~--~~-~~~~~d~~~l~~~l~~-~~~lv~v~ 149 (402)
T TIGR02006 79 LAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRY-----LEREGFEVTYLP--PK-SNGLIDLEELKAAIRD-DTILVSIM 149 (402)
T ss_pred HHHHHHHHhhcCCCCEEEECCCccHHHHHHHHH-----HHhcCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CCEEEEEE
Confidence 566555 37899999999888887654431 122355565565 44 5678999999999987 89999887
Q ss_pred -CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
++| +|...|+++|.++|+++|+++++|++|+.|..+.++.... +|++++|+||+ .||.| |+++++++.
T Consensus 150 ~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~---~D~~~~s~~K~-~gp~G~G~l~~~~~~ 220 (402)
T TIGR02006 150 HVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELK---VDLMSISGHKI-YGPKGIGALYVRRKP 220 (402)
T ss_pred CCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccC---CCEEEEehhhh-cCCCceEEEEEccCC
Confidence 555 7888999999999999999999999999998876665444 99999999995 57988 999998753
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-23 Score=186.99 Aligned_cols=211 Identities=15% Similarity=0.130 Sum_probs=156.3
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHH
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a 131 (286)
.+.+++|+.+++++.+.+...+ .++....+.......+...++++.+++++|++.. .+|++++|++ ++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~v~~~~g~t~a~~~~~~~ 80 (373)
T cd06453 6 AATSQKPQPVIDAIVDYYRHYN--ANVHRGVHELSARATDAYEAAREKVARFINAPSP---DEIIFTRNTTEAINLVAYG 80 (373)
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC---CeEEEeCCHHHHHHHHHHH
Confidence 4566789999999988875533 2322211122233445566688999999998722 2588999988 77768888
Q ss_pred hcC---CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-C
Q 023191 132 LLK---PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-Y 206 (286)
Q Consensus 132 ~~~---~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~ 206 (286)
+.. +||+|++++++|++...+... .+...|.+++.++ .+ +++.+|++++++.+.+ ++++|+++ ++| +
T Consensus 81 l~~~~~~g~~vl~~~~~~~~~~~~~~~----~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~t 152 (373)
T cd06453 81 LGRANKPGDEIVTSVMEHHSNIVPWQQ----LAERTGAKLKVVP--VD-DDGQLDLEALEKLLTE-RTKLVAVTHVSNVL 152 (373)
T ss_pred hhhcCCCCCEEEECcchhHHHHHHHHH----HHhhcCcEEEEee--cC-CCCCcCHHHHHHHhcC-CceEEEEeCccccc
Confidence 877 999999999888775433221 1224566666665 34 5678999999999987 89999987 666 7
Q ss_pred CCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 207 g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
|...|+++|.++|++||+++++|++|+.|....+.... ++|++++|+|||+++++.|++++++++.+..+
T Consensus 153 G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~ 222 (373)
T cd06453 153 GTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDL---GCDFLAFSGHKMLGPTGIGVLYGKEELLEEMP 222 (373)
T ss_pred CCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeecccc---CCCEEEeccccccCCCCcEEEEEchHHhhcCC
Confidence 88899999999999999999999999888765544433 38999999999998744499999987665443
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-23 Score=187.07 Aligned_cols=202 Identities=19% Similarity=0.260 Sum_probs=148.4
Q ss_pred CCCCCCHHHHHHhccccc--cCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHH
Q 023191 54 SENFTSVSVMQAVGSVMT--NKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYT 130 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~ 130 (286)
+..++|+.+++++.+++. +.+ +.+............+..+.+++.+++++|++++ +|++++|++ ++..++.
T Consensus 11 ~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~----~v~~~~g~t~al~~~l~ 84 (404)
T PRK14012 11 ATTPVDPRVAEKMMPYLTMDGTF--GNPASRSHRFGWQAEEAVDIARNQIADLIGADPR----EIVFTSGATESDNLAIK 84 (404)
T ss_pred CCCCCCHHHHHHHHHHHHhcccC--cCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC----eEEEeCCHHHHHHHHHH
Confidence 444789999999988775 333 2222110110011124455677999999999875 488888888 6665666
Q ss_pred Hh----cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC
Q 023191 131 AL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (286)
Q Consensus 131 a~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n 205 (286)
++ .++||+|++++.+|+++..++... ...|.+++.++ .+ +++.+|+++|++++++ ++++|+++ .+|
T Consensus 85 ~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-----~~~g~~~~~v~--~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~~n 155 (404)
T PRK14012 85 GAAHFYQKKGKHIITSKTEHKAVLDTCRQL-----EREGFEVTYLD--PQ-SNGIIDLEKLEAAMRD-DTILVSIMHVNN 155 (404)
T ss_pred HHHHhhcCCCCEEEEecCccHHHHHHHHHH-----HhCCCEEEEEc--cC-CCCcCCHHHHHHhcCC-CCEEEEEECcCC
Confidence 55 489999999998888876544321 12355555554 44 5678999999999987 89999887 555
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
+|...|+++|.++|+++|+++|+|++|++|..+.+..... +|++++|+|| +.||.| |+++++++.
T Consensus 156 ~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~---~D~~~~s~~K-~~gp~g~G~l~~~~~~ 222 (404)
T PRK14012 156 EIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLK---VDLMSFSAHK-IYGPKGIGALYVRRKP 222 (404)
T ss_pred CccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCC---CCEEEEehhh-ccCCCceEEEEEecCC
Confidence 7889999999999999999999999999998866554443 9999999999 557888 999988764
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=184.95 Aligned_cols=235 Identities=14% Similarity=0.105 Sum_probs=170.1
Q ss_pred cccccccChHHHHHHHHHHHHHHcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (286)
++++..++++.+..+.+.. ...+.++|..|++ ++++.+++++.+.+.+.. ..|+...+..+|++++.+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~Lr~aia~~~ 104 (413)
T PLN00175 33 AKRLEKFKTTIFTQMSSLA-IKHGAINLGQGFPNFDGPDFVKEAAIQAIRDGK-------NQYARGFGVPELNSAIAERF 104 (413)
T ss_pred hHHhhcCCCCHHHHHHHHh-hcCCeEecCCCCCCCCCCHHHHHHHHHHHhcCC-------CCcCCCCCCHHHHHHHHHHH
Confidence 4556667777777776653 3347899998877 357888888888775411 22455678889999999999
Q ss_pred HHHCCCCCCCcce-eEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCC
Q 023191 102 LEAFRLDPEKWGV-NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST 179 (286)
Q Consensus 102 ~~~~g~~~~~~~~-~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 179 (286)
.+.+|.+.+. . +|++|+|++ ++.+++.++++|||+|++++ |.|..+...+...|.+++.++ ++.++
T Consensus 105 ~~~~g~~~~~--~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~--------P~y~~~~~~~~~~g~~~~~v~--~~~~~ 172 (413)
T PLN00175 105 KKDTGLVVDP--EKEVTVTSGCTEAIAATILGLINPGDEVILFA--------PFYDSYEATLSMAGAKIKTVT--LRPPD 172 (413)
T ss_pred HHHhCCCCCC--CCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeC--------CCchhHHHHHHHcCCEEEEEE--CCccc
Confidence 9988864322 2 599999999 88778889999999999999 555444445567777666665 44345
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCC-CCCC---cce
Q 023191 180 GYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFE---YAD 250 (286)
Q Consensus 180 ~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~~~---~~D 250 (286)
+.+|+++|++.+.+ ++|+|+++ |+| +|... ++++|+++|++|+++||+|+++........... ..+. ...
T Consensus 173 ~~~~~~~l~~~~~~-~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~v 251 (413)
T PLN00175 173 FAVPEDELKAAFTS-KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERT 251 (413)
T ss_pred CCCCHHHHHHhcCc-CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcE
Confidence 88999999999987 89999997 666 67555 477899999999999999999654332211100 0111 245
Q ss_pred EEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 251 VVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 251 ~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
+++.|++|.|+ |.+.|++++++++.+...
T Consensus 252 i~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~ 282 (413)
T PLN00175 252 VTMNSLGKTFSLTGWKIGWAIAPPHLTWGVR 282 (413)
T ss_pred EEEecchhhccCcchheeeeEeCHHHHHHHH
Confidence 78999999874 556699999988766554
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=183.49 Aligned_cols=231 Identities=15% Similarity=0.106 Sum_probs=163.8
Q ss_pred ccChHHHHHHHHHHHHHHcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC
Q 023191 29 VVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR 106 (286)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g 106 (286)
...+..+..+........+.++|..|++ ++++.+++++.+.+.+.. ..|+...+..++++++.+++.+.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~la~~~~~~~~ 79 (382)
T PRK06108 7 ALPESGIREVANAGRGREGVLPLWFGESDLPTPDFIRDAAAAALADGE-------TFYTHNLGIPELREALARYVSRLHG 79 (382)
T ss_pred hCCchHHHHHHHHHhccCCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3444555555554333346799999887 358899999888775421 1245556788999999999999888
Q ss_pred --CCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCC
Q 023191 107 --LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 183 (286)
Q Consensus 107 --~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d 183 (286)
++++ +|++|+|++ ++..++.+++++||.|++++|.|..+ ...+...|.+++.++++.+..++.+|
T Consensus 80 ~~~~~~----~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~--------~~~~~~~g~~~~~v~~~~~~~~~~~d 147 (382)
T PRK06108 80 VATPPE----RIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNL--------VAAPKILGARVVCVPLDFGGGGWTLD 147 (382)
T ss_pred CCcCcc----eEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccch--------HHHHHHCCCEEEEeeCCCCCCCccCC
Confidence 4553 599999999 88778889999999999999555443 33445667666666643322356899
Q ss_pred HHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccc-cCCCCC--CCC---cceEE
Q 023191 184 YDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVA-AGVIPS--PFE---YADVV 252 (286)
Q Consensus 184 ~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~-~~~~~~--~~~---~~D~v 252 (286)
++++++.+++ ++++|+++ ++| +|... ++++|+++|+++++++|+|++|...... ....+. .+. ...++
T Consensus 148 ~~~l~~~~~~-~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (382)
T PRK06108 148 LDRLLAAITP-RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIF 226 (382)
T ss_pred HHHHHHhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEE
Confidence 9999999876 89999887 666 67544 4778999999999999999997654332 111111 111 24578
Q ss_pred EeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 253 TTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 253 ~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
+.|++|+|+ |.+-|++++++++.+..+
T Consensus 227 ~~S~SK~~g~~G~RiG~~~~~~~~~~~~~ 255 (382)
T PRK06108 227 VNSFSKNWAMTGWRLGWLVAPPALGQVLE 255 (382)
T ss_pred EeechhhccCcccceeeeeCCHHHHHHHH
Confidence 999999874 444599999887765544
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=181.19 Aligned_cols=234 Identities=10% Similarity=0.015 Sum_probs=162.0
Q ss_pred cccccChHHHHHHHHHHHHH----HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 26 PLEVVDPEIADIIEHEKARQ----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~----~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
+++.+.++.+..+.....+. .+.++|..+++. +|+.+++++.+.+.+.. .+ |+...+..++++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~------Y~~~~g~~~lr~~ia~ 80 (387)
T PRK08960 8 RSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGH-TR------YTAARGLPALREAIAG 80 (387)
T ss_pred HHHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-Cc------cCCCCCCHHHHHHHHH
Confidence 34445566666655543322 356899988874 68899999988776421 11 3445677899999999
Q ss_pred HHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCC
Q 023191 100 RALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178 (286)
Q Consensus 100 ~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 178 (286)
++.+.+|.+.+. .+|++|+|++ ++..++.++++|||+|++++|.|+.+.. .+...|.+++.++++.+ .
T Consensus 81 ~~~~~~g~~~~~--~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~--------~~~~~g~~~~~v~~~~~-~ 149 (387)
T PRK08960 81 FYAQRYGVDVDP--ERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRH--------FLRLVEGAAQLVPVGPD-S 149 (387)
T ss_pred HHHHHhCCCCCh--hhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHH--------HHHhcCCeEEEEecCcc-c
Confidence 998877753322 3699999999 8877889999999999999966655533 33455666666664322 3
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--cceE
Q 023191 179 TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADV 251 (286)
Q Consensus 179 ~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~ 251 (286)
++.+|++++++.+++ ++++++++ |+| +|...+ +++|+++|++||+++|+|+++.. ....+.....+. ...+
T Consensus 150 ~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~-~~~~~~~~~~~~~~~~vi 227 (387)
T PRK08960 150 RYQLTPALVERHWNA-DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHG-LTYGVDAASVLEVDDDAF 227 (387)
T ss_pred CCCCCHHHHHHHhCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccc-cccCCCCCChhhccCCEE
Confidence 568999999999887 78888886 777 776665 55777789999999999999642 222111111111 1236
Q ss_pred EEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 252 VTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 252 v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
++.|++|.|+ |.+.|++++++++.+..+
T Consensus 228 ~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~ 257 (387)
T PRK08960 228 VLNSFSKYFGMTGWRLGWLVAPPAAVPELE 257 (387)
T ss_pred EEeecccccCCcccEEEEEEcCHHHHHHHH
Confidence 7899999874 445699999987665443
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=184.54 Aligned_cols=202 Identities=17% Similarity=0.249 Sum_probs=153.0
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHH
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a 131 (286)
++..++|+.+++++.+++...+ +.++..+ .......++.+.+++.+++++|++++ +|++++|++ ++..++.+
T Consensus 7 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~r~~la~~~g~~~~----~i~~~~g~t~a~~~~~~~ 79 (381)
T PRK02948 7 AATTPMSKEALQTYQKAASQYF--GNESSLH-DIGGTASSLLQVCRKTFAEMIGGEEQ----GIYFTSGGTESNYLAIQS 79 (381)
T ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCcccc-HHHHHHHHHHHHHHHHHHHHhCCCCC----eEEEeCcHHHHHHHHHHH
Confidence 3445789999999988876533 2222111 11123345677788999999998764 599999988 77767777
Q ss_pred hc----CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 132 LL----KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 132 ~~----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
++ ++||.|++...+|+++..... .++..|.+++.++ ++ +++.+|++++++.+++ ++++|+++ ++|
T Consensus 80 ~~~~~~~~g~~vv~~~~~h~s~~~~~~-----~~~~~g~~v~~v~--~~-~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~ 150 (381)
T PRK02948 80 LLNALPQNKKHIITTPMEHASIHSYFQ-----SLESQGYTVTEIP--VD-KSGLIRLVDLERAITP-DTVLASIQHANSE 150 (381)
T ss_pred HHHhccCCCCEEEECCcccHHHHHHHH-----HHHhCCCEEEEEe--eC-CCCCCCHHHHHHhcCC-CCEEEEEECCcCC
Confidence 75 679999999988887754432 2234565566665 44 4578999999999987 88999887 555
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
+|...|+++|.++|+++|+++++|++|.+|..+.+....+ +|+++.|+||++ ||.| |++++++++
T Consensus 151 tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~---~d~~~~s~~K~~-gp~G~G~l~~~~~~ 216 (381)
T PRK02948 151 IGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMG---IDSLSVSAHKIY-GPKGVGAVYINPQV 216 (381)
T ss_pred cEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCC---CCEEEecHHhcC-CCCcEEEEEEcCCC
Confidence 7889999999999999999999999999987766655554 999999999965 7888 999998764
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=188.23 Aligned_cols=226 Identities=20% Similarity=0.155 Sum_probs=161.2
Q ss_pred ccccccccChHHHHHHHHHHHHH----HcCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHH
Q 023191 23 LNAPLEVVDPEIADIIEHEKARQ----WKGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 93 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 93 (286)
+++++..+.+++...+.....+. .+.++|..|++ ++|+.+++++.+.+... .+ |+...+..+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~--~~------Y~~~~G~~~l 190 (517)
T PRK13355 119 KSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDT--EG------YSDSKGLFSA 190 (517)
T ss_pred hhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcC--CC------CCCCcChHHH
Confidence 46666777777776555544333 36799998766 24889999998776431 12 4556778899
Q ss_pred HHHHHHHHHHHCC--CCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEE
Q 023191 94 ESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 170 (286)
Q Consensus 94 ~~~~~~~~~~~~g--~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 170 (286)
++++.+++.+..+ ++++ +|++|+|++ ++.+++.++++|||+|++++ |.|+.|...+...|..++.
T Consensus 191 Reaia~~~~~~~~~~~~~~----~I~it~G~~eal~~~~~~l~~~Gd~Vli~~--------P~y~~y~~~~~~~g~~~v~ 258 (517)
T PRK13355 191 RKAIMQYAQLKGLPNVDVD----DIYTGNGVSELINLSMSALLDDGDEVLIPS--------PDYPLWTACVNLAGGTAVH 258 (517)
T ss_pred HHHHHHHHHhcCCCCCChh----HEEEeCcHHHHHHHHHHHhCCCCCEEEEcC--------CCCcCHHHHHHHCCCEEEE
Confidence 9999998877664 3553 699999999 87778899999999999999 5555555456677876655
Q ss_pred EecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCC-CCC
Q 023191 171 MPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGV-IPS 244 (286)
Q Consensus 171 v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~ 244 (286)
++++.+ ++|.+|++++++.+++ +||+|+++ |+| +|...+ +++|+++|++|+++||+|+++. .....+. +..
T Consensus 259 ~~~~~~-~~~~~d~~~l~~~~~~-~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~-~~~~~~~~~~s 335 (517)
T PRK13355 259 YRCDEQ-SEWYPDIDDIRSKITS-RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYD-RLVMDGLEHTS 335 (517)
T ss_pred eecCcc-cCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhh-hhcCCCCCccc
Confidence 553322 4589999999999987 89999887 766 776666 7889999999999999999964 2222221 111
Q ss_pred CCC-cce---EEEeCCCCCC--CCCCceEEEEe
Q 023191 245 PFE-YAD---VVTTTTHKSL--RGPRGAMIFFR 271 (286)
Q Consensus 245 ~~~-~~D---~v~~s~~K~l--~gp~gG~l~~~ 271 (286)
... ..| +++.|++|++ .|++-|++++.
T Consensus 336 ~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~ 368 (517)
T PRK13355 336 IASLAPDLFCVTFSGLSKSHMIAGYRIGWMILS 368 (517)
T ss_pred HHHhCCCCeEEEEecchhhccCcccceEEEEee
Confidence 111 112 3368999985 67777999854
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=182.22 Aligned_cols=201 Identities=18% Similarity=0.315 Sum_probs=147.4
Q ss_pred CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC-CCCCcceeEEeCCChH-HHHHHHHH
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP-SNFQVYTA 131 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~v~~~sG~~-a~~~~l~a 131 (286)
+..++++.|++++.+++.+.+ ++++..+..+......++++..+ +.+.++. +++ +|++|+|++ ++..++.+
T Consensus 7 a~~~~~~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~~~~----~i~~t~g~teal~~~~~~ 79 (382)
T TIGR03403 7 ATTMLDPKVKELMDPFFCDIY--GNPNSLHQFGTATHPAIAEALDK-LYKGINARDLD----DIIITSCATESNNWVLKG 79 (382)
T ss_pred CCCCCCHHHHHHHHHHHHhcC--cCCccccHHHHHHHHHHHHHHHH-HHHHcCcCCCC----eEEEeCCHHHHHHHHHHH
Confidence 344678899999998887644 23322111122344566655544 4456676 443 599999999 77667776
Q ss_pred hc-----CC-CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CC
Q 023191 132 LL-----KP-HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (286)
Q Consensus 132 ~~-----~~-Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~ 204 (286)
+. ++ +++|+++..+|+++..+.. .+...|.+++.++ ++ +++.+|++++++.+++ +|++++++ ++
T Consensus 80 ~~~~~~~~~~~~~vi~~~~e~ps~~~~~~-----~~~~~G~~v~~v~--~~-~~g~~d~~~l~~~i~~-~t~lv~~~~~~ 150 (382)
T TIGR03403 80 VYFDEILKGGKNHIITTEVEHPAVRATCA-----FLESLGVEVTYLP--IN-EQGTITAEQVREAITE-KTALVSVMWAN 150 (382)
T ss_pred HHHhhcccCCCCEEEEcCCccHHHHHHHH-----HHHHCCCEEEEEe--cC-CCCCCCHHHHHHhccc-CCeEEEEEccc
Confidence 52 55 5789999988888765433 1223565566665 44 4578999999999987 89999887 66
Q ss_pred C-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 205 n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
| +|...|+++|.++|+++|+++++|++|+.|..+.+..... +|++++|+||| .||.| |++++++++
T Consensus 151 n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~---~D~~~~s~~K~-~gp~G~g~l~vr~~~ 218 (382)
T TIGR03403 151 NETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAG---VDFLSFSAHKF-HGPKGVGGLYIRKGV 218 (382)
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccC---CCEEEEcchhh-CCCCceEEEEECCCC
Confidence 6 7899999999999999999999999999887766655444 99999999996 57998 999998765
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=177.39 Aligned_cols=216 Identities=16% Similarity=0.107 Sum_probs=152.9
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|..+++. +++.+.+++.+.+..... ..|+...+..++++++++++++.+|.+.+. ..+|++|+|++
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-~~~vi~t~G~~ 101 (383)
T TIGR03540 29 VDVISLGIGDPDLPTPKHIVEALCKAAENPEN------HRYPSYEGMLAYRQAVADWYKRRFGVELDP-ETEVLSLIGSK 101 (383)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCCCCCCHHHHHHHHHHHHHhhCCCCCC-CCeEEECCCcH
Confidence 356889888774 578888888876643111 124445667889999999999887774321 01589999998
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-CCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
++..++++++++||.|++++ |.|+.+...+...|.+++.+|+ +. +++.+|++++++.+.+ ++|+|++
T Consensus 102 ~~l~~~~~~~~~~gd~vlv~~--------P~y~~~~~~~~~~G~~v~~v~~--~~~~g~~~d~~~l~~~~~~-~~~~v~i 170 (383)
T TIGR03540 102 EGIAHIPLAFVNPGDIVLVPD--------PGYPVYRIGTLFAGGEPYEMPL--KEENGFLPDFDAIPEDIAK-KAKLMFI 170 (383)
T ss_pred HHHHHHHHHhCCCCCEEEEeC--------CCCcchHHHHHhcCCEEEEEec--CcccCCccCHHHHHhhccc-cceEEEE
Confidence 87778899999999999999 4554444455667776666654 32 3567899999998877 8999999
Q ss_pred c-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CCC---cceEEEeCCCCCCC--CCCceEEE
Q 023191 202 G-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFE---YADVVTTTTHKSLR--GPRGAMIF 269 (286)
Q Consensus 202 ~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~---~~D~v~~s~~K~l~--gp~gG~l~ 269 (286)
+ |+| +|...+ +++|+++|++|++++|+|+++..-......... .+. ...+++.|++|+|+ |.|-|+++
T Consensus 171 ~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i 250 (383)
T TIGR03540 171 NYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAV 250 (383)
T ss_pred eCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEe
Confidence 8 777 776666 688899999999999999997532221101111 111 13477899999884 44459999
Q ss_pred Eecchhhhhc
Q 023191 270 FRKGVKEINK 279 (286)
Q Consensus 270 ~~~~~~~~~~ 279 (286)
.++++.+...
T Consensus 251 ~~~~l~~~~~ 260 (383)
T TIGR03540 251 GNADLIAGLG 260 (383)
T ss_pred CCHHHHHHHH
Confidence 9887765443
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=178.17 Aligned_cols=240 Identities=14% Similarity=0.096 Sum_probs=164.6
Q ss_pred hhccccccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHH
Q 023191 21 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (286)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (286)
+++++++.......++.+.+......+.++|..+++. +++.+.+++.+.+.... ..|+...+..+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia 76 (384)
T PRK06348 4 KFLAKKYQQMEVNIMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGH-------TRYTDSGGDVELIEEII 76 (384)
T ss_pred hHHHHHHhcCCccHHHHHHHHHHhcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHH
Confidence 3455555666666666666654333467999888774 45667665544332211 12455567788999999
Q ss_pred HHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC
Q 023191 99 KRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE 177 (286)
Q Consensus 99 ~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 177 (286)
+++.+.+|...+. .+|++|+|++ ++..++.++++|||+|++++ |.|..+...+...|..++.+++. +.
T Consensus 77 ~~~~~~~~~~~~~--~~i~it~G~~~al~~~~~~~~~~gd~vlv~~--------p~y~~~~~~~~~~g~~~~~~~~~-~~ 145 (384)
T PRK06348 77 KYYSKNYDLSFKR--NEIMATVGACHGMYLALQSILDPGDEVIIHE--------PYFTPYKDQIEMVGGKPIILETY-EE 145 (384)
T ss_pred HHHHHHhCCCCCh--hhEEEcCChHHHHHHHHHHhcCCCCEEEEeC--------CCCcchHHHHHHcCCEEEEecCC-cC
Confidence 9998877663332 3699999999 88779999999999999999 55544444555667655555432 22
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCC-CCCC---c
Q 023191 178 STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFE---Y 248 (286)
Q Consensus 178 ~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~~~---~ 248 (286)
+++.+|++++++.+++ ++++|+++ |+| +|...+ +++|.++|+++++++|+|+++..-........ ..+. .
T Consensus 146 ~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 224 (384)
T PRK06348 146 DGFQINVKKLEALITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPE 224 (384)
T ss_pred cCCcCCHHHHHHhhCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcC
Confidence 4578999999998876 89999987 766 675554 77889999999999999999653222111111 0111 2
Q ss_pred ceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 249 ADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 249 ~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
..+++.|++|+++ |.|.|++++++++.+..+
T Consensus 225 ~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~ 257 (384)
T PRK06348 225 RTITFGSFSKDFAMTGWRIGYVIAPDYIIETAK 257 (384)
T ss_pred cEEEEecchhccCCccccceeeecCHHHHHHHH
Confidence 4577899999875 556699999887765544
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=179.12 Aligned_cols=206 Identities=16% Similarity=0.111 Sum_probs=145.3
Q ss_pred CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL 132 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~ 132 (286)
...+..+.+++++.++-.. + +.+...............+.+++.+++++|++ ++++++|++ ++.+++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~------~i~~~~g~t~al~~~l~~~ 79 (361)
T cd06452 9 RGGRLTPEARKALIEWGDG-Y--SVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMD------EARVTPGAREGKFAVMHSL 79 (361)
T ss_pred cCCCCCHHHHHHHHHHhcc-c--CCccccccccccccCchHHHHHHHHHHHcCCc------eEEEeCCHHHHHHHHHHHh
Confidence 4446788999999876632 2 12111000000011112233558888999983 388999999 888799999
Q ss_pred cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh------cCCcEEEEc-CCC
Q 023191 133 LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL------FRPKLIVAG-ASA 205 (286)
Q Consensus 133 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~~tk~v~i~-~~n 205 (286)
+++||+|+++++.|.+... .+...|.+++.++.+.+ .++.+|++++++.+++ .++++|+++ ++|
T Consensus 80 ~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n 150 (361)
T cd06452 80 CEKGDWVVVDGLAHYTSYV--------AAERAGLNVREVPNTGH-PEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDG 150 (361)
T ss_pred cCCCCEEEEcCCcchHHHH--------HHHhcCCEEEEEecCCC-CCcccCHHHHHHHHHHHhhccCCCceEEEEECCCC
Confidence 9999999999866655432 23456766666654321 2368999999998863 268899997 555
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhcc
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQ 280 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~ 280 (286)
+|...++++|.++|+++|+++|+|+||+.|..+...... ++|++++|+||++++|.+ |++++++++.+..++
T Consensus 151 ~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~ 224 (361)
T cd06452 151 NYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKEL---GADFIVGSGHKSMAASAPIGVLATTEEWADIVFR 224 (361)
T ss_pred CCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHc---CCCEEEecCCccccCCCCeEEEEECHHHHHHHhc
Confidence 778899999999999999999999999877654332222 389999999999977665 999999887766543
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=179.48 Aligned_cols=216 Identities=17% Similarity=0.188 Sum_probs=153.7
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEeCCC
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSG 121 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~~sG 121 (286)
.+.++|..++++ +++.+.+++.+.+..... ..|+...+..+|++++.+++.+.+|. ++++ +|++|+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~I~it~G 100 (388)
T PRK07366 30 KELIDLSLGSSDLPAPAHALEAIAQSLHDPST------HGYLLFHGTLDFREAAAQWYEQRFGLAVDPET---EVLPLIG 100 (388)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhCccc------CCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcC---eEEECCC
Confidence 356999988883 588889998876643111 12444567788999999999888775 4431 4999999
Q ss_pred hH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 122 ~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
++ ++.+++.++++|||+|++++ |.|+.+...+...|.+++.++++. .+++.+|++++++.+.+ ++|+|+
T Consensus 101 s~~al~~~~~~l~~~gd~Vlv~~--------P~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~~~l~~~~~~-~~k~i~ 170 (388)
T PRK07366 101 SQEGTAHLPLAVLNPGDFALLLD--------PGYPSHAGGVYLAGGQIYPMPLRA-ENDFLPVFADIPTEVLA-QARLMV 170 (388)
T ss_pred cHHHHHHHHHHhCCCCCEEEEcC--------CCCcchHHHHHhcCCEEEEEECCC-ccCCCCCHHHHHHhhcc-cceEEE
Confidence 99 88878899999999999999 555555545667787776666431 13568899999888776 899999
Q ss_pred Ec-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCC-CCCC--CC-c--ceEEEeCCCCCC--CCCCceE
Q 023191 201 AG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGV-IPSP--FE-Y--ADVVTTTTHKSL--RGPRGAM 267 (286)
Q Consensus 201 i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~~--~~-~--~D~v~~s~~K~l--~gp~gG~ 267 (286)
++ |+| +|...+ +++|+++|++|+++||+|+++.--...... .+.. +. . .-+++.|++|+| .|.|.|+
T Consensus 171 l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~ 250 (388)
T PRK07366 171 LSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGF 250 (388)
T ss_pred EeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhhee
Confidence 98 666 675554 667888999999999999995432211111 1111 11 1 236689999987 4556699
Q ss_pred EEEecchhhhhcc
Q 023191 268 IFFRKGVKEINKQ 280 (286)
Q Consensus 268 l~~~~~~~~~~~~ 280 (286)
++.++++.+..++
T Consensus 251 ~v~~~~li~~l~~ 263 (388)
T PRK07366 251 AIGNAQLIQALRQ 263 (388)
T ss_pred hcCCHHHHHHHHH
Confidence 9998887765543
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=175.41 Aligned_cols=202 Identities=18% Similarity=0.143 Sum_probs=144.6
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh--cCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LKP 135 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~--~~~ 135 (286)
+....+.+...+.+.+ |++.... .......++|+++++++++++|+++++ ....+|+|+| +++.++.+. ..+
T Consensus 35 ~~~~~~~~~~~~~~n~--gnp~~~~-~~g~~~~~~e~~~~~~~a~l~g~~~~~--~~G~~TsGgTean~~a~~~ar~~~~ 109 (380)
T PRK02769 35 DYSALKRFFSFSINNC--GDPYSKS-NYPLNSFDFERDVMNFFAELFKIPFNE--SWGYITNGGTEGNLYGCYLARELFP 109 (380)
T ss_pred CHHHHHHHHHhhhccC--CCccccC-CCCCChHHHHHHHHHHHHHHhCCCCCC--CCEEEecChHHHHHHHHHHHHHhCC
Confidence 3444555555554434 3333211 111235688999999999999997543 1247789988 776554433 467
Q ss_pred CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCC-CCCccC
Q 023191 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLYD 211 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n-~g~~~~ 211 (286)
+++|++++.+|.++..+. ...|.+.+.++ .+ +++.+|+++|++++++. +|++|+++ .+| +|.+.|
T Consensus 110 ~~~ii~s~~~H~Sv~ka~--------~~lg~~~~~V~--~~-~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp 178 (380)
T PRK02769 110 DGTLYYSKDTHYSVSKIA--------RLLRIKSRVIT--SL-PNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN 178 (380)
T ss_pred CcEEEeCCCceehHHHHH--------HHcCCCCceec--cC-CCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC
Confidence 899999999998886543 34454455565 34 46889999999999872 38888887 555 889999
Q ss_pred HHHHHHHHHhcC---CEEEEeccccccccccCCCCCCC---CcceEEEeCCCCCCCCCCc-eEEEEecchhh
Q 023191 212 YERIRKVCNKQK---AIMLADMAHISGLVAAGVIPSPF---EYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (286)
Q Consensus 212 l~~I~~ia~~~~---~~vivD~a~~~g~~~~~~~~~~~---~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (286)
+++|+++|+++| +++++|+||+.+.++......++ .++|++++|+|||+++|.| |+++++++..+
T Consensus 179 i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~ 250 (380)
T PRK02769 179 IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVE 250 (380)
T ss_pred HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhhh
Confidence 999999999998 69999999998877532111111 1599999999999999999 99999987544
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-22 Score=179.06 Aligned_cols=233 Identities=14% Similarity=0.177 Sum_probs=163.2
Q ss_pred ccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 023191 27 LEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (286)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (286)
++.+...++..+.+. ....+.++|..|++. +++.+.+++.+.+.... ..|+...+..+++++++++++++
T Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~l~~~ 82 (384)
T PRK12414 11 LPDVGTTIFTVIGQL-AAQHDALNLSQGAPNFAPDPALVEGVARAMRDGH-------NQYAPMAGIAALREALAEKTERL 82 (384)
T ss_pred cccCCccHHHHHHHH-HHhCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCC-------CCcCCCCCcHHHHHHHHHHHHHH
Confidence 344455566655543 234567999988874 47888888877664311 12455677889999999999999
Q ss_pred CCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCC
Q 023191 105 FRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 183 (286)
Q Consensus 105 ~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d 183 (286)
+|++.+. ..+|++|+|++ ++..+++++++|||+|+++++.|.. +...+...|.+++.++ .+.+++.+|
T Consensus 83 ~g~~~~~-~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~--------~~~~~~~~g~~~~~v~--~~~~~~~~d 151 (384)
T PRK12414 83 YGARYDP-ASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDS--------YAPIVRLQGATPVAIK--LSPEDFRVN 151 (384)
T ss_pred hCCCCCC-CCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccc--------hHHHHHHcCCEEEEEe--cCccccccC
Confidence 9985311 01599999999 8777889999999999999955543 3334455676565555 443467899
Q ss_pred HHHHHHHhhhcCCcEEEEc-CCC-CCCc---cCHHHHHHHHHhcCCEEEEeccccccccccCCCCC-----CCCcceEEE
Q 023191 184 YDQLEKSATLFRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-----PFEYADVVT 253 (286)
Q Consensus 184 ~e~l~~~i~~~~tk~v~i~-~~n-~g~~---~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~-----~~~~~D~v~ 253 (286)
++++++.+++ ++|+|+++ ++| +|.. .++++|+++|++|++++|+|+++..-......... .+....+++
T Consensus 152 ~~~l~~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~ 230 (384)
T PRK12414 152 WDEVAAAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIV 230 (384)
T ss_pred HHHHHhhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEE
Confidence 9999999987 89999997 666 6754 45888999999999999999997532221111110 011134789
Q ss_pred eCCCCCC--CCCCceEEEEecchhhhhc
Q 023191 254 TTTHKSL--RGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 254 ~s~~K~l--~gp~gG~l~~~~~~~~~~~ 279 (286)
.|++|.| .|.|-|++++++++.+...
T Consensus 231 ~SfSK~~~~pGlRiG~~v~~~~l~~~l~ 258 (384)
T PRK12414 231 SSFGKSYHVTGWRVGYCLAPAELMDEIR 258 (384)
T ss_pred ecccccccCccceEEEEecCHHHHHHHH
Confidence 9999987 4455599999988765544
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=178.40 Aligned_cols=236 Identities=12% Similarity=0.080 Sum_probs=165.3
Q ss_pred ccccccChHHHHHHHHHHHHHHcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHH
Q 023191 25 APLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRAL 102 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (286)
+++....+.++..+.+...+..+.++|..|++ ++++.+++++.+.+.... ...|+...+..+++++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~------~~~Y~~~~G~~~lr~~~~~~l~ 79 (389)
T PRK05957 6 SRMDAVQSPIIPVVGQLIRENPGTISLGQGVVSYPPPPEAIEALNNFLANPE------NHKYQAVQGIPPLLEAITQKLQ 79 (389)
T ss_pred HHHHhcCCcHHHHHHHHHHhCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCCCCCCHHHHHHHHHHHH
Confidence 34444555566555554433345689988877 368889999988764321 1224555778899999999999
Q ss_pred HHCCCCCC-CcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCC
Q 023191 103 EAFRLDPE-KWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180 (286)
Q Consensus 103 ~~~g~~~~-~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 180 (286)
+.+|.+.+ . .+|++|+|++ ++..++.+++++||+|++++|.|..+. ..+...|.+++.++ .+ +++
T Consensus 80 ~~~g~~~~~~--~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~--------~~~~~~g~~~~~v~--~~-~~~ 146 (389)
T PRK05957 80 QDNGIELNNE--QAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHE--------MAITMAGCQPILVP--TD-DNY 146 (389)
T ss_pred HHhCCCCCCC--CeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHH--------HHHHhcCCEEEEee--cC-CCC
Confidence 99997422 1 3699999998 777788888999999999995554442 23345666565555 44 567
Q ss_pred CCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CC-C--cce
Q 023191 181 YIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PF-E--YAD 250 (286)
Q Consensus 181 ~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~-~--~~D 250 (286)
.+|++++++.+++ ++|+|+++ ++| +|...+ +++|+++|+++|+++|+|+++..-......... .+ + ...
T Consensus 147 ~~d~~~l~~~i~~-~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 225 (389)
T PRK05957 147 QLQPEAIEQAITP-KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHT 225 (389)
T ss_pred CcCHHHHHHhcCc-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcE
Confidence 8999999999987 89999887 666 777666 888999999999999999996522211111111 11 1 134
Q ss_pred EEEeCCCCCCC--CCCceEEEEecchhhhhcc
Q 023191 251 VVTTTTHKSLR--GPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 251 ~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~~ 280 (286)
+++.|++|.++ |.|-|++++++++.+..++
T Consensus 226 i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~ 257 (389)
T PRK05957 226 ISLYSLSKAYGFASWRIGYMVIPIHLLEAIKK 257 (389)
T ss_pred EEEecchhhccCccceeEEEecCHHHHHHHHH
Confidence 77999999874 4445999998887766653
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=178.34 Aligned_cols=238 Identities=12% Similarity=0.077 Sum_probs=167.0
Q ss_pred hhccccccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHH
Q 023191 21 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (286)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (286)
++|++++....+..+..+.... .....++|..+.+. .|+.+.+++.+.+.+.. ..|+...+..++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia 73 (387)
T PRK08912 2 KMGNPVFADLPTTIFEVMSQLA-REHGAINLGQGFPDDPGPEDVRRAAADALLDGS-------NQYPPMMGLPELRQAVA 73 (387)
T ss_pred chhhHHHhhCCCCHHHHHHHHH-hhCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHH
Confidence 3455556666666666666543 22467898877663 46778887776654321 12455577789999999
Q ss_pred HHHHHHCCCCCCCcce-eEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 99 KRALEAFRLDPEKWGV-NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 99 ~~~~~~~g~~~~~~~~-~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+++.+.+|.+.+. . +|++|+|++ ++.+++.+++++||+|++++|.| ..+...+...|.+++.++ ++
T Consensus 74 ~~~~~~~g~~~~~--~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y--------~~~~~~~~~~g~~~~~~~--~~ 141 (387)
T PRK08912 74 AHYARFQGLDLDP--ETEVMVTSGATEALAAALLALVEPGDEVVLFQPLY--------DAYLPLIRRAGGVPRLVR--LE 141 (387)
T ss_pred HHHHHHhCCCCCC--cccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCc--------hhhHHHHHHcCCEEEEEe--cC
Confidence 9999888864332 2 599999999 88778899999999999999544 444445566776665555 44
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC-----CC
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-----PF 246 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~-----~~ 246 (286)
.+++.+|++++++.+.+ ++|+|+++ |+| +|...+ +++|.++|++|++++|+|+++............ ..
T Consensus 142 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 220 (387)
T PRK08912 142 PPHWRLPRAALAAAFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGM 220 (387)
T ss_pred cccCcCCHHHHHHHhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCc
Confidence 34678999999999887 89999987 777 776655 677899999999999999997532221111110 11
Q ss_pred CcceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 247 EYADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 247 ~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
...++++.|++|.|+ |.+-|+++++.++.+..+
T Consensus 221 ~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~ 255 (387)
T PRK08912 221 RERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLA 255 (387)
T ss_pred cCceEEEeechhhccCcCceeEEEecCHHHHHHHH
Confidence 135688999999874 334599999888776554
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=184.94 Aligned_cols=228 Identities=14% Similarity=0.139 Sum_probs=154.3
Q ss_pred cccccChHHHHHHHHHHHH----HHcCceecCCCC---CCCH----HHHHHhccccccCCCCCCCCCcccCCcchHHHHH
Q 023191 26 PLEVVDPEIADIIEHEKAR----QWKGLELIPSEN---FTSV----SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE 94 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~----~~~~i~L~~~e~---~~~~----~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 94 (286)
+++.+.+.....+.+.... ..+.++|..+++ +.++ .+.+++.+++... ...|++..+..+|+
T Consensus 12 r~~~v~~~~~~~~~~~~~~l~~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g-------~~~Y~~~~g~~~Lr 84 (460)
T PRK13238 12 RIKMVEPIRLTTREERERALAEAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRG-------DEAYAGSRSYYRLE 84 (460)
T ss_pred eeceeccccccCHHHHHHHHHHcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhC-------CcccCCCCCHHHHH
Confidence 3344555444434333222 236789988886 3332 4677777666431 12356677888888
Q ss_pred HHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 95 SLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 95 ~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
+.++++++.+. |++|+|++ ++.++++++++||| |++++ |.|..+...+.+.|.+++.+++
T Consensus 85 ----eaia~~~~~~~------vv~t~ggt~A~~~~~~all~pGD-Vii~~--------p~~~~~~~~i~~~G~~~v~v~~ 145 (460)
T PRK13238 85 ----DAVKDIFGYPY------TIPTHQGRAAEQILFPVLIKKGD-VVPSN--------YHFDTTRAHIELNGATAVDLVI 145 (460)
T ss_pred ----HHHHHHhCCCc------EEECCCHHHHHHHHHHHhCCCCC-EEccC--------CcccchHHHHHHcCCEEEEEec
Confidence 45566666553 88888888 88878999999999 88888 4444444456678877777765
Q ss_pred ccC-----CCCC--CCCHHHHHHHhhh---cCCcEEEEc-CCC-CC-Ccc---CHHHHHHHHHhcCCEEEEecccccc-c
Q 023191 174 RLN-----ESTG--YIDYDQLEKSATL---FRPKLIVAG-ASA-YA-RLY---DYERIRKVCNKQKAIMLADMAHISG-L 236 (286)
Q Consensus 174 ~~~-----~~~~--~~d~e~l~~~i~~---~~tk~v~i~-~~n-~g-~~~---~l~~I~~ia~~~~~~vivD~a~~~g-~ 236 (286)
+.. .+.+ .+|+++|++.+++ .+|++|+++ ++| +| ... ++++|.++|++||++||+|+||..+ .
T Consensus 146 ~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a 225 (460)
T PRK13238 146 DEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENA 225 (460)
T ss_pred cccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhh
Confidence 321 0234 4999999999985 268999998 667 44 444 4679999999999999999998653 2
Q ss_pred cccC-----CCCCC--------CCcceEEEeCCCCCCCCCCceEEEEec-chhhhhc
Q 023191 237 VAAG-----VIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRK-GVKEINK 279 (286)
Q Consensus 237 ~~~~-----~~~~~--------~~~~D~v~~s~~K~l~gp~gG~l~~~~-~~~~~~~ 279 (286)
+... ..... ..++|++++|++|.+.+|.||++++++ ++....+
T Consensus 226 ~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~ 282 (460)
T PRK13238 226 YFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECR 282 (460)
T ss_pred hhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhh
Confidence 1111 11111 134899999999999999999999996 4544443
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=178.40 Aligned_cols=233 Identities=16% Similarity=0.148 Sum_probs=161.5
Q ss_pred cccccChHHHHHHHHHHHHH----HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 26 PLEVVDPEIADIIEHEKARQ----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~----~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
++....++.+..+.....+. .+.++|..+++. +++.+++++.+.+.+....+| + ..+..++++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y------~-~~G~~~lr~aia~ 80 (399)
T PRK07681 8 RMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGY------T-LSGIQEFHEAVTE 80 (399)
T ss_pred HHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCC------C-CCCcHHHHHHHHH
Confidence 33434455555554443222 356899888874 678888888876643110122 2 2467789999999
Q ss_pred HHHHHCCC--CCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 100 RALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 100 ~~~~~~g~--~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
++.+.+|. ++++ +|++|+|++ ++..++.+++++||.|++++ |.|+.+...+...|.+++.+| ++
T Consensus 81 ~~~~~~g~~~~~~~---~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~--------P~y~~~~~~~~~~G~~~~~v~--~~ 147 (399)
T PRK07681 81 YYNNTHNVILNADK---EVLLLMGSQDGLVHLPMVYANPGDIILVPD--------PGYTAYETGIQMAGATSYYMP--LK 147 (399)
T ss_pred HHHHHhCCCCCCCC---eEEECCCcHHHHHHHHHHhCCCCCEEEECC--------CCccchHHHHHhcCCEEEEEe--cC
Confidence 99888776 4422 599999999 88778899999999999999 555555545667787666665 44
Q ss_pred C-CCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CCC-
Q 023191 177 E-STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFE- 247 (286)
Q Consensus 177 ~-~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~- 247 (286)
. +++.+|++++++.+.+ ++|+|+++ |+| +|...+ +++|+++|++|+++||+|+++..-......... .+.
T Consensus 148 ~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~ 226 (399)
T PRK07681 148 KENDFLPDLELIPEEIAD-KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPG 226 (399)
T ss_pred CCCCCcCCHHHHHHhccc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCC
Confidence 3 3568999999998876 89999998 777 776666 778899999999999999997532222111111 111
Q ss_pred --cceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 248 --YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 248 --~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
...+++.|++|.|+ |.+.|+++.++++.+..+
T Consensus 227 ~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~ 262 (399)
T PRK07681 227 AKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALT 262 (399)
T ss_pred CcccEEEEeecccccCCccceeEEEecCHHHHHHHH
Confidence 13477899999874 445599999888776554
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-22 Score=177.69 Aligned_cols=190 Identities=14% Similarity=0.061 Sum_probs=139.2
Q ss_pred CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL 132 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~ 132 (286)
|-+.+|++++++|.+++.+ | ...+++.+++++++++++|.+. +++++|++ ++.+++.++
T Consensus 21 g~s~~~~~v~~a~~~~~~~-~-------------~~~~~~~~~~~~~~a~~~g~~~------~~~~~g~t~al~~al~al 80 (363)
T TIGR01437 21 GVSTVSDEVADAQKRGAQN-Y-------------FEIKELVNKTGEYIANLLGVED------AVIVSSASAGIAQSVAAV 80 (363)
T ss_pred CCCCCCHHHHHHHHHHHhc-C-------------CCHHHHHHHHHHHHHHhhCCCe------EEEEcCHHHHHHHHHHHH
Confidence 4446899999999988644 2 1245777888899999999763 67888888 888899999
Q ss_pred cCCCC---------------eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCc
Q 023191 133 LKPHD---------------RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 197 (286)
Q Consensus 133 ~~~Gd---------------~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk 197 (286)
+++|| +|+++.+.+..+..+. ...+.+.|.+++.+ +. ++.+|++++++++++ +|+
T Consensus 81 ~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~----~~~~~~~g~~~v~v--~~---~~~~d~~~le~ai~~-~t~ 150 (363)
T TIGR01437 81 ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPV----ETMVRLGGGKVVEA--GY---ANECSAEQLEAAITE-KTA 150 (363)
T ss_pred hcCCCcchhhcccccccccceEEEECccchhcCCch----HHHHHhcCCeEEEE--cC---CCCCCHHHHHHhcCh-hce
Confidence 99998 7777663332221111 11334566555444 33 356999999999998 899
Q ss_pred EEE-Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEecch
Q 023191 198 LIV-AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGV 274 (286)
Q Consensus 198 ~v~-i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~ 274 (286)
+++ ++ ++| +|...|+++|+++|++||+++|+|++|..... ..... ++|++++|+||+|+||++|+++.++++
T Consensus 151 ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~--~~~~~---g~D~~~~S~~K~l~gp~~G~l~~~~~~ 225 (363)
T TIGR01437 151 AILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ--KYYRL---GADLVIYSGAKAIEGPTSGLVLGKKKY 225 (363)
T ss_pred EEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchH--HHHHc---CCCEEEEeCCcccCCCceEEEEEcHHH
Confidence 766 45 566 66788999999999999999999999863210 00011 489999999999999999999988766
Q ss_pred hhhh
Q 023191 275 KEIN 278 (286)
Q Consensus 275 ~~~~ 278 (286)
.+..
T Consensus 226 i~~~ 229 (363)
T TIGR01437 226 IEWV 229 (363)
T ss_pred HHHH
Confidence 5543
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=176.37 Aligned_cols=186 Identities=13% Similarity=0.089 Sum_probs=133.6
Q ss_pred ccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc-CCCCeEEeccCCCCcccCccccccccc
Q 023191 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL-KPHDRIMALDLPHGGHLSHGYQTDTKK 160 (286)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~~ 160 (286)
.|+...+..+|++++.+++.+.+|++.+. .+|++|+|++ ++..++++++ +|||+|++++ |.|+.|...
T Consensus 102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~--~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~--------P~Y~~y~~~ 171 (407)
T PLN02368 102 AYSDSRGLPGVRKEVAEFIERRDGYPSDP--ELIFLTDGASKGVMQILNAVIRGEKDGVLVPV--------PQYPLYSAT 171 (407)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCh--hhEEEcccHHHHHHHHHHHHcCCCCCEEEEeC--------CCCccHHHH
Confidence 35666788899999999999888863322 3699999999 8877888887 7999999999 666666656
Q ss_pred cccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEec
Q 023191 161 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADM 230 (286)
Q Consensus 161 ~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~ 230 (286)
+...|.+++.+++..+ ++|.+|++++++.+++. ++|+++++ |+| +|.+.+ +++|+++|++|+++||+|+
T Consensus 172 ~~~~g~~~v~v~~~~~-~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE 250 (407)
T PLN02368 172 ISLLGGTLVPYYLEES-ENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDE 250 (407)
T ss_pred HHHcCCEEEEEecccc-cCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 6778876665654322 45789999999988641 58888886 777 775554 6788889999999999999
Q ss_pred cccccccccC-CCCC------CC----C-c-ceEEEeCCCCCC---CCCCceEEEE---ecchhhhhc
Q 023191 231 AHISGLVAAG-VIPS------PF----E-Y-ADVVTTTTHKSL---RGPRGAMIFF---RKGVKEINK 279 (286)
Q Consensus 231 a~~~g~~~~~-~~~~------~~----~-~-~D~v~~s~~K~l---~gp~gG~l~~---~~~~~~~~~ 279 (286)
++..-..... .+.. .+ . . .-+++.|++|+| .|+|.|++++ +.++.+...
T Consensus 251 ~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~ 318 (407)
T PLN02368 251 VYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIY 318 (407)
T ss_pred cccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHH
Confidence 9643222111 1111 00 1 1 236689999986 5888899985 555554443
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=178.35 Aligned_cols=230 Identities=14% Similarity=0.109 Sum_probs=159.7
Q ss_pred ccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC
Q 023191 29 VVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR 106 (286)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g 106 (286)
.+....+..+.+......+.++|..+++. +++.+++++.+.+.... ..|.+..+..++++++++++.+.+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~g 88 (391)
T PRK08361 16 LIQRSKIRELFERASKMENVISLGIGEPDFDTPKNIKEAAKRALDEGW-------THYTPNAGIPELREAIAEYYKKFYG 88 (391)
T ss_pred hCCccHHHHHHHHHHhhcCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHHHHHHhC
Confidence 33344444444433223457999988874 46788888877665421 1134446778999999999988777
Q ss_pred CCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCC-CCCCCH
Q 023191 107 LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES-TGYIDY 184 (286)
Q Consensus 107 ~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~ 184 (286)
...+. .+|++|+|++ ++.+++.+++++||.|+++++.|.++ ...+...|.+++.++ ++.+ ++.+|+
T Consensus 89 ~~~~~--~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~--------~~~~~~~g~~~~~v~--~~~~~~~~~d~ 156 (391)
T PRK08361 89 VDVDV--DNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCY--------VEDAKIAEAKPIRIP--LREENEFQPDP 156 (391)
T ss_pred CCCCc--ccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccc--------HHHHHHcCCEEEEEe--cCCccCCCCCH
Confidence 53222 3599999999 87778889999999999999655444 334455676665565 4433 568999
Q ss_pred HHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC--CC-cceEEEeCC
Q 023191 185 DQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP--FE-YADVVTTTT 256 (286)
Q Consensus 185 e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~--~~-~~D~v~~s~ 256 (286)
+++++.+++ ++++++++ |+| +|...+ +++|+++|+++++++|+|+++............. +. ..++++.|+
T Consensus 157 ~~l~~~i~~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~ 235 (391)
T PRK08361 157 DELLELITK-RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSF 235 (391)
T ss_pred HHHHHhccc-ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecC
Confidence 999999987 89999887 767 777777 7889999999999999999975432221111110 11 256889999
Q ss_pred CCCCCCC--CceEEEEecchhhhh
Q 023191 257 HKSLRGP--RGAMIFFRKGVKEIN 278 (286)
Q Consensus 257 ~K~l~gp--~gG~l~~~~~~~~~~ 278 (286)
+|.|+.| +.|++++++++.+..
T Consensus 236 SK~~~~~GlRiG~~~~~~~~~~~~ 259 (391)
T PRK08361 236 SKTFAMTGWRLGFVIAPEQVIKDM 259 (391)
T ss_pred chhcCCcHhhhhhhccCHHHHHHH
Confidence 9988544 349999987766544
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-22 Score=174.85 Aligned_cols=191 Identities=18% Similarity=0.187 Sum_probs=149.0
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL 132 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~ 132 (286)
...+...++.++++.+.+.+.+. ...+...++| +.+++++|+.. .|.+.||++|+.++++++
T Consensus 8 ~~~p~i~~~e~~~v~~vl~sg~i---------~~G~~v~~FE----~~~ae~~G~k~-----ava~~sgT~AL~laL~al 69 (374)
T COG0399 8 FSRPSIGEEELAAVQEVLKSGWL---------TGGPFVRRFE----QAFAEYLGVKY-----AVAVSSGTAALHLALLAL 69 (374)
T ss_pred CCCCCcchHHHHHHHHHHHcCCe---------ecChHHHHHH----HHHHHHhCCCe-----EEEecChHHHHHHHHHhc
Confidence 34445678889999999988552 1124566777 77888899987 488888888887788877
Q ss_pred -cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccC
Q 023191 133 -LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYD 211 (286)
Q Consensus 133 -~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~ 211 (286)
+.|||+|++++..+.+... .+...|.++ +.+++|++++.+|++.||++|++ +||+|+. .+-.|...+
T Consensus 70 ~ig~GDeVI~ps~TfvATan--------~i~~~Ga~P--VFvDid~~T~nid~~~ie~aIt~-~tKAIip-Vhl~G~~~d 137 (374)
T COG0399 70 AIGPGDEVIVPSFTFVATAN--------AVLLVGAKP--VFVDIDPDTLNIDPDLIEAAITP-RTKAIIP-VHLAGQPCD 137 (374)
T ss_pred CCCCCCEEEecCCchHHHHH--------HHHHcCCeE--EEEecCCcccCCCHHHHHHHccc-CCeEEEE-ehhccCCCC
Confidence 8999999999977766654 344667555 55578888899999999999999 8999974 233788889
Q ss_pred HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 212 YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 212 l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
+++|.++|++||++||.|+||+.|....+.....+..+-++.|..+|.+....||++++|++
T Consensus 138 m~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ 199 (374)
T COG0399 138 MDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDE 199 (374)
T ss_pred HHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCccccCceEEEeCCH
Confidence 99999999999999999999999999877755544223344444569997779999999984
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=175.43 Aligned_cols=236 Identities=16% Similarity=0.116 Sum_probs=161.7
Q ss_pred cccccChHHHHHHHHHHHHH----HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 26 PLEVVDPEIADIIEHEKARQ----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~----~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
++....++.+..+.....+. .+.++|..+++. +++.+.+++.+.+..... ..|+...+..++++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~aia~ 80 (385)
T PRK09276 7 RIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPEN------HQYPSYEGMLEFRKAVAD 80 (385)
T ss_pred HhhhCCccHHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCCCCCcHHHHHHHHH
Confidence 34445555555444432221 356899988874 578888888877643111 124445667899999999
Q ss_pred HHHHHCCCCCCCcce-eEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC
Q 023191 100 RALEAFRLDPEKWGV-NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE 177 (286)
Q Consensus 100 ~~~~~~g~~~~~~~~-~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 177 (286)
++.+.+|.+.+. . +|++|+|++ ++..++.++++|||+|++++ |.|+.+...+...|.+++.++++.+
T Consensus 81 ~~~~~~g~~~~~--~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~--------P~y~~~~~~~~~~g~~~~~v~~~~~- 149 (385)
T PRK09276 81 WYKRRFGVELDP--ETEVISLIGSKEGIAHIPLAFVNPGDVVLVPD--------PGYPVYKIGTIFAGGEPYFMPLKEE- 149 (385)
T ss_pred HHHHHhCCCCCC--CCcEEEccCcHHHHHHHHHHhCCCCCEEEEcC--------CCCcChHHHHHHcCCEEEEEecCCC-
Confidence 999887863322 2 499999998 87778899999999999999 5554444455567776666664322
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CC---C
Q 023191 178 STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PF---E 247 (286)
Q Consensus 178 ~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~---~ 247 (286)
+++.+|++++++.+.+ ++++|+++ |+| +|...+ +++|+++|++|+++||+|+++............ .+ .
T Consensus 150 ~g~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 228 (385)
T PRK09276 150 NGFLPDLDAIPEDVAK-KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAK 228 (385)
T ss_pred CCCcCCHHHHHHhccc-cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCc
Confidence 3567899999988876 89999998 766 776665 578889999999999999997533221111111 11 1
Q ss_pred cceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 248 YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 248 ~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
...+++.|++|.|+ |.+.|++++++++.+..+
T Consensus 229 ~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~ 262 (385)
T PRK09276 229 DVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLG 262 (385)
T ss_pred CCEEEEecchhhcCCcchhheeeeCCHHHHHHHH
Confidence 24577899999874 334599999888776554
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=175.46 Aligned_cols=200 Identities=13% Similarity=0.104 Sum_probs=148.4
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
+-|++|....++.|.+++.....+ + . ....++.+.+++.+++++|+++++ ..|++|+|++ ++..
T Consensus 5 ~l~~pgp~~~~~~v~~~~~~~~~~-~----------~--~~~~~~~~~~r~~la~l~~~~~~~--~~i~~t~~~t~al~~ 69 (363)
T TIGR02326 5 LLLTPGPLTTSRTVKEAMLFDWCT-W----------D--SDYNIVVEQIRQQLLALATAEEGY--TSVLLQGSGTFAVEA 69 (363)
T ss_pred eEecCCCCCCCHHHHHHhCCCCCC-C----------C--hHHHHHHHHHHHHHHHHhCCCCCc--eEEEEcCCCHHHHHH
Confidence 457777778899999988764421 1 1 234456667889999999997542 2588888877 8877
Q ss_pred HHHHhcCCCCeEEeccC-CCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-CCcEEEEc-CC
Q 023191 128 VYTALLKPHDRIMALDL-PHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-RPKLIVAG-AS 204 (286)
Q Consensus 128 ~l~a~~~~Gd~Vl~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-~tk~v~i~-~~ 204 (286)
++.+++.+||.+++..+ .|+..+ ...+...|.+++.+++ + +++.+|++++++++++. +++++.+. ..
T Consensus 70 ~~~~l~~~~~~vlv~~~~~~~~~~-------~~~a~~~g~~~~~v~~--~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 139 (363)
T TIGR02326 70 VIGSAVPKDGKLLVVINGAYGARI-------VQIAEYLGIPHHVVDT--G-EVEPPDVVEVEAILAADPAITHIALVHCE 139 (363)
T ss_pred HHHhcCCCCCeEEEEeCChhhHHH-------HHHHHHcCCceEEEeC--C-CCCCCCHHHHHHHHhhCCCccEEEEEeec
Confidence 88899899988777552 221110 1123445666666653 3 45789999999998752 35666654 44
Q ss_pred C-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhh
Q 023191 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (286)
Q Consensus 205 n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (286)
| +|...|+++|.++|++||+++++|++|+.|..+.++..+. +|++++|+||||+||.| |++++++++.+
T Consensus 140 ~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~---~D~~~~s~~K~l~~p~G~G~l~~~~~~~~ 210 (363)
T TIGR02326 140 TTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELH---IDYLISSANKCIQGVPGFGFVIARQAELA 210 (363)
T ss_pred CCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcC---ccEEEecCccccccCCcceEEEECHHHHH
Confidence 4 8889999999999999999999999999988776665555 99999999999999999 99999987554
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=175.87 Aligned_cols=211 Identities=14% Similarity=0.082 Sum_probs=149.5
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
..++|..++++ +++.+.+++.+.+.+.. ...|+...+..+|++++.+++.+.+|..... .+|++|+|++
T Consensus 30 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~ 101 (386)
T PRK07550 30 PLIDLSQAVPGYPPPPELLRALAEAAADPA------AHLYGPVEGLPELREAYAAHYSRLYGAAISP--EQVHITSGCNQ 101 (386)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhCcC------CcCCCCCCCCHHHHHHHHHHHHHHhCCCCCc--ceEEEecCcHH
Confidence 56888888874 47788888877653211 1124455678899999999999888864322 3699999988
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-CCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++..++.+++++||+|++++|.|..+ ...+...|.+++.++ .+. +++.+|++++++.+++ ++++|+++
T Consensus 102 al~~~~~~l~~~gd~Vlv~~p~y~~~--------~~~~~~~g~~~~~v~--~~~~~~~~~~~~~l~~~~~~-~~~~v~~~ 170 (386)
T PRK07550 102 AFWAAMVTLAGAGDEVILPLPWYFNH--------KMWLDMLGIRPVYLP--CDEGPGLLPDPAAAEALITP-RTRAIALV 170 (386)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCcch--------HHHHHhcCCEEEEEe--cCCCcCCCCCHHHHHHHhcc-cCcEEEEe
Confidence 87778889999999999999555443 323456676665555 442 4567899999999987 89998876
Q ss_pred -CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC-CCC-----cceEEEeCCCCCCC--CCCceEEE
Q 023191 203 -ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-PFE-----YADVVTTTTHKSLR--GPRGAMIF 269 (286)
Q Consensus 203 -~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~-~~~-----~~D~v~~s~~K~l~--gp~gG~l~ 269 (286)
|+| +|...+ +++|+++|++||++||+|+++.. ......... .+. ...+++.|++|+++ |.+.|+++
T Consensus 171 ~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~ 249 (386)
T PRK07550 171 TPNNPTGVVYPPELLHELYDLARRHGIALILDETYRD-FDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVV 249 (386)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchh-hccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeee
Confidence 766 665555 78999999999999999999652 221111111 111 12366999999885 55669999
Q ss_pred Eecchhhh
Q 023191 270 FRKGVKEI 277 (286)
Q Consensus 270 ~~~~~~~~ 277 (286)
+++++...
T Consensus 250 ~~~~~~~~ 257 (386)
T PRK07550 250 ASPARIAE 257 (386)
T ss_pred cCHHHHHH
Confidence 98766543
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=175.72 Aligned_cols=235 Identities=14% Similarity=0.121 Sum_probs=158.6
Q ss_pred ccccChHHHHHHHHHHHH----HHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHH
Q 023191 27 LEVVDPEIADIIEHEKAR----QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (286)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~----~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (286)
+..+.++.+..+.+...+ ..+.++|..+.+. +|+.+.+++.+.+.... ...|+...+..+|++++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~aia~~ 85 (394)
T PRK05942 12 LQALPPYVFARLDELKARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQ------NHGYPPFEGTASFRQAITDW 85 (394)
T ss_pred hccCCCcHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCC------CccCCCCCCCHHHHHHHHHH
Confidence 344445555444332221 1356888877653 45667777666553211 12245557788999999999
Q ss_pred HHHHCCCCCCCcce-eEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCC
Q 023191 101 ALEAFRLDPEKWGV-NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178 (286)
Q Consensus 101 ~~~~~g~~~~~~~~-~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 178 (286)
+.+.+|++.+. . +|++|+|++ ++..++.++++|||+|++++|.|+.+.. .+...|.+++.++++.+ +
T Consensus 86 ~~~~~~~~~~~--~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~--------~~~~~g~~~~~v~~~~~-~ 154 (394)
T PRK05942 86 YHRRYGVELDP--DSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFR--------GPLIAGAQIYPIILKPE-N 154 (394)
T ss_pred HHHHHCCCcCC--CCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHHcCCEEEEeecCCc-c
Confidence 98887863222 2 488999999 8877888999999999999966554432 33456766655554322 3
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC---C---C
Q 023191 179 TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---F---E 247 (286)
Q Consensus 179 ~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~---~---~ 247 (286)
++.+|++++++.+.+ ++|+|+++ |+| +|...+ +++|.++|++|+++||+|+++...... +..... + .
T Consensus 155 ~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~-~~~~~~~~~~~~~~ 232 (394)
T PRK05942 155 DWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFD-GYQPTSLLEIPGAK 232 (394)
T ss_pred CCccCHHHHHHhccc-cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccC-CCCCCChhhCCCcc
Confidence 568999999999877 99999998 777 776666 778899999999999999996533221 111111 1 1
Q ss_pred cceEEEeCCCCCCC--CCCceEEEEecchhhhhcc
Q 023191 248 YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 248 ~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~~ 280 (286)
...+++.|++|.|+ |.+.|++++++++.+..++
T Consensus 233 ~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~ 267 (394)
T PRK05942 233 DIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRT 267 (394)
T ss_pred ccEEEEecchhccCChhhheeeeecCHHHHHHHHH
Confidence 23477899999774 3345999998887766653
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=182.39 Aligned_cols=206 Identities=15% Similarity=0.123 Sum_probs=145.3
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc-CCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL-KPH 136 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~-~~G 136 (286)
|..+++++.+++.... .....|+...+..+|++++.+++.+..|++.+. .+|++|+|++ ++..++++++ +||
T Consensus 90 P~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~--~~I~it~Ga~~al~~~~~~l~~~~g 163 (481)
T PTZ00377 90 PADVVARAKEYLNAIG----GGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDP--SDIFLTDGASSGIKLLLQLLIGDPS 163 (481)
T ss_pred CHHHHHHHHHHHHhCC----CcccCcCcccCCHHHHHHHHHHHHHhcCCCCCh--hhEEEcCCHHHHHHHHHHHhccCCC
Confidence 3467777766554311 112336777889999999999999887864433 4699999999 8887889998 799
Q ss_pred CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc-CCC-CCCc
Q 023191 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG-ASA-YARL 209 (286)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~-~~n-~g~~ 209 (286)
|+|++++ |.|+.|...+...|..++.++++.+ ++|.+|++++++.+++. ++|+|+++ |+| +|..
T Consensus 164 D~Vlv~~--------P~y~~y~~~~~~~g~~~v~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~ 234 (481)
T PTZ00377 164 DGVMIPI--------PQYPLYSAAITLLGGKQVPYYLDEE-KGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQV 234 (481)
T ss_pred CEEEECC--------CCchhHHHHHHHcCCEEEEEEeccc-cCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC
Confidence 9999999 6666555566778877766654322 45789999999998642 68888776 777 7766
Q ss_pred cC---HHHHHHHHHhcCCEEEEeccccccccccC-CCCC------CCC-c-----ceEEEeCCCCCC---CCCCceEEEE
Q 023191 210 YD---YERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS------PFE-Y-----ADVVTTTTHKSL---RGPRGAMIFF 270 (286)
Q Consensus 210 ~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~------~~~-~-----~D~v~~s~~K~l---~gp~gG~l~~ 270 (286)
.+ +++|+++|++|+++||+|+++..-....+ .... .+. . .-+++.|++|.+ +|.|.|++.+
T Consensus 235 ~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~ 314 (481)
T PTZ00377 235 LTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFEL 314 (481)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEE
Confidence 66 78899999999999999999653222111 1111 011 0 125688999974 5888899987
Q ss_pred ---ecchhhhhc
Q 023191 271 ---RKGVKEINK 279 (286)
Q Consensus 271 ---~~~~~~~~~ 279 (286)
+.++.+...
T Consensus 315 ~~~p~~li~~l~ 326 (481)
T PTZ00377 315 TNIPPEVREQIY 326 (481)
T ss_pred eCCCHHHHHHHH
Confidence 566665443
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=177.39 Aligned_cols=232 Identities=12% Similarity=0.077 Sum_probs=161.3
Q ss_pred ccccChHHHHHHHHHHHHH-----HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 27 LEVVDPEIADIIEHEKARQ-----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~-----~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
+..+.++.+..+.+..... .+.++|..++++ +++.+++++.+.+... ..|+...+..++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~--------~~Y~~~~G~~~lr~~ia~ 76 (396)
T PRK09147 5 LDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLDGL--------ASYPTTAGLPALREAIAA 76 (396)
T ss_pred hhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhhhh--------cCCCCCCCCHHHHHHHHH
Confidence 3444454555444443322 367899888874 5788888887765321 123445667889999999
Q ss_pred HHHHHCCCC---CCCcceeEEeCCChH-HHHHHHHHhcCC---CCeEEeccCCCCcccCccccccccccccceeeeEEEe
Q 023191 100 RALEAFRLD---PEKWGVNVQSLSGSP-SNFQVYTALLKP---HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (286)
Q Consensus 100 ~~~~~~g~~---~~~~~~~v~~~sG~~-a~~~~l~a~~~~---Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (286)
++.+.+|.+ +++ +|++|+|++ ++..+++++++| ||.|++++ |.|..+...+...|.+++.+|
T Consensus 77 ~~~~~~g~~~~~~~~---~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~--------P~y~~~~~~~~~~g~~~~~vp 145 (396)
T PRK09147 77 WLERRYGLPALDPAT---QVLPVNGSREALFAFAQTVIDRDGPGPLVVCPN--------PFYQIYEGAALLAGAEPYFLN 145 (396)
T ss_pred HHHHHhCCCcCCccc---eEEECCChHHHHHHHHHHHcCCCCCCCEEEEcC--------CCccchHHHHHhcCCEEEEec
Confidence 999888854 332 599999999 888799999999 99999999 565555545667787666665
Q ss_pred cccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCC-C
Q 023191 173 YRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-F 246 (286)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~-~ 246 (286)
++-+ +++.+|++++++.+.+ ++|+++++ |+| +|... .+++|+++|++|+++||+|+++..-.......... +
T Consensus 146 ~~~~-~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~ 223 (396)
T PRK09147 146 CDPA-NNFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLL 223 (396)
T ss_pred cCcc-ccCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhh
Confidence 4312 3578999999988876 89999998 766 77555 47788899999999999999965432211100000 0
Q ss_pred --------C--cceEEEeCCCCCC--CCCCceEEEEecchhhhhc
Q 023191 247 --------E--YADVVTTTTHKSL--RGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 247 --------~--~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~~~ 279 (286)
. ..-+++.|++|.+ .|.+.|++++++++.+..+
T Consensus 224 ~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~ 268 (396)
T PRK09147 224 EAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFL 268 (396)
T ss_pred hhccccCccccccEEEEeccccccCCccceeeeecCCHHHHHHHH
Confidence 0 1237899999964 5556699999888765544
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=176.48 Aligned_cols=232 Identities=13% Similarity=0.075 Sum_probs=158.8
Q ss_pred ccccChHHHHHHHHHHHHH----HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHH
Q 023191 27 LEVVDPEIADIIEHEKARQ----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (286)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~----~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (286)
+....+..+..+.....+. .+.++|..+++. +++.+.+++.+.+.+.. ..|+...+..++++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~ 79 (388)
T PRK07337 7 VDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGV-------TQYTSALGLAPLREAIAAW 79 (388)
T ss_pred hHhcCchHHHHHHHHHHHHHhcCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHH
Confidence 3344444444444433222 356889888774 57788888887765311 1134456778999999999
Q ss_pred HHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-C
Q 023191 101 ALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-S 178 (286)
Q Consensus 101 ~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~ 178 (286)
+.+.+|+..+. .+|++|+|++ ++..++.+++++||+|++++|.|+++. ..+...|.+++.++ .+. +
T Consensus 80 ~~~~~~~~~~~--~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--------~~~~~~g~~~~~~~--~~~~~ 147 (388)
T PRK07337 80 YARRFGLDVAP--ERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNR--------HFVAAAEGRPVLVP--SGPAE 147 (388)
T ss_pred HHHHhCCCCCh--HhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH--------HHHHHcCCEEEEee--cCCcc
Confidence 98888863322 3699999999 877788899999999999996665543 23345565565565 442 3
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cce-E
Q 023191 179 TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YAD-V 251 (286)
Q Consensus 179 ~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D-~ 251 (286)
++.+|++++++.+.+ ++++|+++ |+| +|...+ +++|+++|+++++++|+|+++. .....+.....+. +.+ +
T Consensus 148 ~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~vi 225 (388)
T PRK07337 148 RFQLTAADVEAAWGE-RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQ-GLSYDAAPVSALSLGDDVI 225 (388)
T ss_pred CCcCCHHHHHhhcCc-cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEecccc-ccccCCCCcChhhccCCEE
Confidence 578999999999987 89999887 777 775554 7788999999999999999954 2222111111111 233 4
Q ss_pred EEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 252 VTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 252 v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
++.|++|.|+ |.+.|++++++++.+..+
T Consensus 226 ~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~ 255 (388)
T PRK07337 226 TINSFSKYFNMTGWRLGWLVVPEALVGTFE 255 (388)
T ss_pred EEEechhhcCCchhheeeeecCHHHHHHHH
Confidence 5789999885 555699999887665443
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=175.20 Aligned_cols=212 Identities=19% Similarity=0.224 Sum_probs=150.9
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEeCCCh
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~~sG~ 122 (286)
+.++|..+++. +++.+.+++.+.+..... ..|++..+..+|++++++++.+.+|. +++. +|++|+|+
T Consensus 33 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~---~i~it~G~ 103 (389)
T PRK08068 33 DVINLGQGNPDQPTPEHIVEALQEAAENPAN------HKYSPFRGYPFLKEAAADFYKREYGVTLDPET---EVAILFGG 103 (389)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---cEEEcCCc
Confidence 56899887653 467788888776643211 12444567789999999999877775 4431 59999999
Q ss_pred H-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-CCCCCCHHHHHHHhhhcCCcEEE
Q 023191 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 123 ~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
+ ++..++.+++++||.|++++ |.|..+...+...|.+++.++ ++. +++.+|++++++.+.+ ++++|+
T Consensus 104 ~~~l~~~~~~~~~~gd~vlv~~--------P~y~~~~~~~~~~g~~~~~i~--~~~~~~~~~d~~~l~~~~~~-~~~~v~ 172 (389)
T PRK08068 104 KAGLVELPQCLMNPGDTILVPD--------PGYPDYLSGVALARAQFETMP--LIAENNFLPDYTKIPEEVAE-KAKLMY 172 (389)
T ss_pred HHHHHHHHHHhCCCCCEEEEcC--------CCCcchHHHHHhcCCEEEEee--cccccCCCCCHHHHHHhccc-cceEEE
Confidence 8 77768899999999999999 555544445567787666665 443 3578999999998876 899999
Q ss_pred Ec-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC-CC-----cceEEEeCCCCCCC--CCCceE
Q 023191 201 AG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-FE-----YADVVTTTTHKSLR--GPRGAM 267 (286)
Q Consensus 201 i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~-~~-----~~D~v~~s~~K~l~--gp~gG~ 267 (286)
++ |+| +|...+ +++|+++|++|+++||+|+++.. ....+..... +. ...+++.|++|.|+ |.|-|+
T Consensus 173 l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~-~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 251 (389)
T PRK08068 173 LNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGA-IGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAF 251 (389)
T ss_pred EECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhh-hccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEe
Confidence 98 766 776665 56888899999999999999642 1111111101 11 13478999999884 445599
Q ss_pred EEEecchhhhhc
Q 023191 268 IFFRKGVKEINK 279 (286)
Q Consensus 268 l~~~~~~~~~~~ 279 (286)
++.++++.+..+
T Consensus 252 ~~~~~~l~~~l~ 263 (389)
T PRK08068 252 AVGNESVIEAIN 263 (389)
T ss_pred EecCHHHHHHHH
Confidence 999888776654
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-21 Score=174.35 Aligned_cols=229 Identities=16% Similarity=0.125 Sum_probs=160.2
Q ss_pred cChHHHHHHHHHHHHH------HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHH
Q 023191 30 VDPEIADIIEHEKARQ------WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (286)
Q Consensus 30 ~~~~~~~~~~~~~~~~------~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (286)
...+.+..+....++. .+.++|..++++ +++.+.+++.+.+..... ..|+. .+..++++++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~------~~Y~~-~G~~~lr~aia~~~ 94 (410)
T PRK06290 22 TVIYKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKKPEN------RGYAD-NGIQEFKEAAARYM 94 (410)
T ss_pred CchhHHHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCC-CCcHHHHHHHHHHH
Confidence 3445555555433322 146899988885 577888888765532111 11332 56789999999999
Q ss_pred HHHCCCC-CCCcce-eEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-
Q 023191 102 LEAFRLD-PEKWGV-NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE- 177 (286)
Q Consensus 102 ~~~~g~~-~~~~~~-~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~- 177 (286)
.+.+|++ .+. . +|++|+|++ ++..++.+++++||.|++++ |.|+.+...+...|.++..++ ++.
T Consensus 95 ~~~~g~~~~~~--~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~--------P~y~~~~~~~~~~g~~v~~v~--~~~~ 162 (410)
T PRK06290 95 EKVFGVKDIDP--VTEVIHSIGSKPALAMLPSCFINPGDVTLMTV--------PGYPVTGTHTKYYGGEVYNLP--LLEE 162 (410)
T ss_pred HHHcCCCcCCC--cceEEEccCHHHHHHHHHHHhCCCCCEEEEeC--------CCCccHHHHHHHcCCEEEEEe--cCCC
Confidence 8888754 221 2 599999999 88778899999999999999 555554445566776666665 443
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CC---C
Q 023191 178 STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PF---E 247 (286)
Q Consensus 178 ~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~---~ 247 (286)
.++.+|++++++.+.+ ++|+|+++ |+| +|...+ +++|+++|++|+++||+|+++...... +.... .+ .
T Consensus 163 ~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~-~~~~s~~~~~~~~ 240 (410)
T PRK06290 163 NNFLPDLDSIPKDIKE-KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFD-GKPLSFLSVPGAK 240 (410)
T ss_pred cCCcCCHHHHHHhhcc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeC-CCCcChhcCCCcc
Confidence 3578899999998876 89999998 777 776666 678888899999999999997643221 11111 11 1
Q ss_pred cceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 248 YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 248 ~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
..++++.|++|.++ |.|.|++++++++.+...
T Consensus 241 ~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~ 274 (410)
T PRK06290 241 EVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFA 274 (410)
T ss_pred ccEEEEeechhhcCCchhheEeEEeCHHHHHHHH
Confidence 25688999999874 445599999888776554
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=176.33 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=147.3
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcc--hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNE--YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
..|||++-+. .+.+.+.+++.++-. ++.+.+..++.. +.......+++.+++++|++. +.+++|+
T Consensus 7 ~~~~~~~~~~~g~~~~~~~~a~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~------~~i~~g~ 75 (370)
T TIGR02539 7 GSINLNPLQRGGVLTEAARKALVEFGD-----GYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDE------ARVTHGA 75 (370)
T ss_pred cccccChhhhCCCCcHHHHHHHHHHhh-----ccccccccccccccccchHHHHHHHHHHHHhCCCc------eEEECCh
Confidence 4677765433 567777777766432 333332222211 111122234577999999975 4456777
Q ss_pred H-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh------cC
Q 023191 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL------FR 195 (286)
Q Consensus 123 ~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~~ 195 (286)
+ ++..++.+++++||.|++..+.|.+.+. .+...|.+++.++..-+ +++.+|++++++.+++ .+
T Consensus 76 ~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~--------~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~ 146 (370)
T TIGR02539 76 REGKFAVMHALCKEGDWVVLDGLAHYTSYV--------AAERAGLNVKEVPHTGH-PEYKVDPEGYGEVIEEVEDESGKP 146 (370)
T ss_pred HHHHHHHHHHhhCCCCEEEECCcccHHHHH--------HHHHcCCEEEEEecCCc-ccCCcCHHHHHHHHHHhhhccCCC
Confidence 7 8888999999999999998876654421 34566776766663211 3578999999999863 26
Q ss_pred CcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEec
Q 023191 196 PKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRK 272 (286)
Q Consensus 196 tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~ 272 (286)
+++|+++ +.| +|...|+++|.++|+++|+++++|++|+.|......... ++|+++.|+||+++++.+ |++++++
T Consensus 147 ~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~---~~di~v~s~sK~~~~~g~~G~l~~~~ 223 (370)
T TIGR02539 147 PVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEI---GADFIVGSGHKSMAASGPCGVLGMSE 223 (370)
T ss_pred cEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHc---CCCEEEeeCcccccCCCCEEEEEECH
Confidence 7888887 555 788999999999999999999999999987543332222 389999999999975444 9999998
Q ss_pred chhhhhcc
Q 023191 273 GVKEINKQ 280 (286)
Q Consensus 273 ~~~~~~~~ 280 (286)
++.+.+++
T Consensus 224 ~~i~~l~~ 231 (370)
T TIGR02539 224 EWEDIVLR 231 (370)
T ss_pred HHHhhhcc
Confidence 88776653
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.8e-21 Score=170.84 Aligned_cols=203 Identities=15% Similarity=0.103 Sum_probs=147.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc--C
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--K 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--~ 134 (286)
....+++++.+++.+.+ |+|... +.......++|+++++++++++|.++++ ..-++|+|+| +++.++.+.. .
T Consensus 35 ~~~~~~~~~~~~~~~~~--gnP~s~-~~~g~~a~~~e~~v~~~ia~llg~~~~~--~~G~fTsGGTEaNl~al~~ar~~~ 109 (374)
T PLN03032 35 FDYGELSQLMKYSINNL--GDPFIE-SNYGVHSRQFEVGVLDWFARLWELEKDE--YWGYITTCGTEGNLHGILVGREVF 109 (374)
T ss_pred cChHHHHHHHHhcccCC--CCCccc-CCCCccHHHHHHHHHHHHHHHhCCCCcc--CCEEEeCchHHHHHHHHHHHHHhC
Confidence 34456888888776655 444432 2222356789999999999999998754 1138888888 8876665442 3
Q ss_pred CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCC-CCCcc
Q 023191 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLY 210 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n-~g~~~ 210 (286)
++..|+++..+|.++... +.+.|..++.+| ++ +++.+|+++|++++++. +|.+|+++ .++ +|.+.
T Consensus 110 ~~~~vi~s~~~H~Sv~ka--------a~~lg~~~~~V~--~d-~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~id 178 (374)
T PLN03032 110 PDGILYASRESHYSVFKA--------ARMYRMEAVKVP--TL-PSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVD 178 (374)
T ss_pred CCcEEEeCCCceeHHHHH--------HHHcCCCCeEee--eC-CCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCC
Confidence 556899999888887653 334555555665 44 56899999999999763 36677776 444 88999
Q ss_pred CHHHHHHHHHhcC-----CEEEEeccccccccccCCCCC--CC-CcceEEEeCCCCCCCCCCc-eEEEEecchhh
Q 023191 211 DYERIRKVCNKQK-----AIMLADMAHISGLVAAGVIPS--PF-EYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (286)
Q Consensus 211 ~l~~I~~ia~~~~-----~~vivD~a~~~g~~~~~~~~~--~~-~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (286)
|+++|+++|+++| +|+++|+|++.+.++...... .+ .++|++++|+||+++.|.| |++++|++..+
T Consensus 179 pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~ 253 (374)
T PLN03032 179 DLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVK 253 (374)
T ss_pred CHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhH
Confidence 9999999999996 589999999888776422111 11 2499999999998877999 99999986543
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=175.67 Aligned_cols=215 Identities=11% Similarity=0.087 Sum_probs=152.8
Q ss_pred cCceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~~sG 121 (286)
+.++|+.+++ ++++.+.+++.+.+..... ..|+...+..+|++++++++++++|. ++++ +|++|+|
T Consensus 40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~---~I~it~G 110 (405)
T PRK06207 40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGGV------QAYTEYRGDADIRELLAARLAAFTGAPVDAAD---ELIITPG 110 (405)
T ss_pred CceecCCcCCCCCCCCHHHHHHHHHHHhcCCC------ccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---CEEEeCC
Confidence 4578886654 3577888888877644211 12444567789999999999999996 4312 5999999
Q ss_pred hH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc--CCCCCCCCHHHHHHHhhhcCCcE
Q 023191 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL--NESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 122 ~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
++ ++..++.++++|||+|++++| .|+.+...+...|.+++.++++. ..+++.+|+++|++++++ ++++
T Consensus 111 a~~al~~~~~~l~~~Gd~Vlv~~P--------~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~-~~k~ 181 (405)
T PRK06207 111 TQGALFLAVAATVARGDKVAIVQP--------DYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA-GVRV 181 (405)
T ss_pred cHHHHHHHHHHhcCCCCEEEEeCC--------CchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh-cCeE
Confidence 99 888799999999999999994 44444445556776666565431 113578999999999887 8998
Q ss_pred EEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC--CC---cceEEEeCCCCCCC--CCCce
Q 023191 199 IVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP--FE---YADVVTTTTHKSLR--GPRGA 266 (286)
Q Consensus 199 v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~--~~---~~D~v~~s~~K~l~--gp~gG 266 (286)
|+++ |+| +|...+ +++|+++|++||++||+|+++..-.......... +. ..-+++.|++|.|+ |.+.|
T Consensus 182 v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG 261 (405)
T PRK06207 182 FLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLG 261 (405)
T ss_pred EEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceE
Confidence 8887 777 776665 7788999999999999999965322211111111 11 12278999999875 66679
Q ss_pred EEEEecchhhhhc
Q 023191 267 MIFFRKGVKEINK 279 (286)
Q Consensus 267 ~l~~~~~~~~~~~ 279 (286)
+++.++++.+..+
T Consensus 262 ~ii~~~~l~~~~~ 274 (405)
T PRK06207 262 VAFGSPAIIDRME 274 (405)
T ss_pred EEEcCHHHHHHHH
Confidence 9999887765554
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=171.99 Aligned_cols=203 Identities=13% Similarity=0.106 Sum_probs=148.6
Q ss_pred eecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHH
Q 023191 50 ELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQV 128 (286)
Q Consensus 50 ~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~ 128 (286)
-|+++...+++.+++++.+.... + . ....+..+.+++.+++++|.+++. ..|.++++++ ++..+
T Consensus 8 ~~~pgP~~~~~~~~~a~~~~~~~-~-----------~-~~~~~~~~~~~~~l~~l~~~~~~~--~~i~~~~~gt~~l~~~ 72 (368)
T PRK13479 8 LLTPGPLTTSRTVREAMLRDWGS-W-----------D-DDFNALTASVRAKLVAIATGEEGY--TCVPLQGSGTFSVEAA 72 (368)
T ss_pred eecCCCCCCCHHHHHHhCCCCCC-C-----------C-hHHHHHHHHHHHHHHHHhCCCCCc--eEEEEcCCcHHHHHHH
Confidence 46777778899999998765421 1 0 112345667889999999986533 2466666655 88879
Q ss_pred HHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh-cCCcEEEEc-CCC-
Q 023191 129 YTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-FRPKLIVAG-ASA- 205 (286)
Q Consensus 129 l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-~~tk~v~i~-~~n- 205 (286)
+.+++.+||.|++..+.+.+.. ....+...|.+++.++. + +++.+|++++++.+++ .++++|+++ ++|
T Consensus 73 ~~~l~~~~~~vlv~~~~~~~~~------~~~~~~~~g~~~~~i~~--~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~ 143 (368)
T PRK13479 73 IGSLVPRDGKVLVPDNGAYGAR------IAQIAEYLGIAHVVLDT--G-EDEPPDAAEVEAALAADPRITHVALVHCETT 143 (368)
T ss_pred HHhccCCCCeEEEEeCCchHHH------HHHHHHHcCCcEEEEEC--C-CCCCCCHHHHHHHHHhCCCCcEEEEEcccCc
Confidence 9999999999998873222110 01233456766766664 3 4567999999999875 145677776 555
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+|...|+++|.++|+++++++++|++|+.|..+.++.... +|++++|+|||++||.| |++++++++.+..+
T Consensus 144 tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~---~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~ 215 (368)
T PRK13479 144 TGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELG---IDALISSANKCIEGVPGFGFVIARRSELEACK 215 (368)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccC---ceEEEecCccccccCCCceEEEECHHHHHHhh
Confidence 7788999999999999999999999998887665554444 89999999999999999 99999988765544
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-21 Score=174.27 Aligned_cols=216 Identities=14% Similarity=0.088 Sum_probs=152.6
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|..+++. +++.+.+++.+.+.... .+ |+...+..++++++.+++.+.+|.+.+. ..+|++|+|++
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~------Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~~i~~t~G~~ 91 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQGY-TS------YTANAGLLELRQEIAKYLKKRFAVSYDP-NDEIIVTVGAS 91 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-CC------CCCCCCcHHHHHHHHHHHHHHhCCCCCC-CCcEEEeCChH
Confidence 367999988884 46677888877654321 12 3444678899999999999887874321 01599999998
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.++++|||.|+++++.| ..+...+...|..+..++++.+ +++.+|++++++++.+ ++++|+++
T Consensus 92 ~al~~~~~~l~~~gd~vl~~~p~y--------~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~v~~~ 161 (378)
T PRK07682 92 QALDVAMRAIINPGDEVLIVEPSF--------VSYAPLVTLAGGVPVPVATTLE-NEFKVQPAQIEAAITA-KTKAILLC 161 (378)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCc--------hhhHHHHHHcCCEEEEeecCCc-cCCCCCHHHHHhhcCc-ccEEEEEE
Confidence 88878899999999999999544 4444344556665555543222 3578999999999877 89999887
Q ss_pred -CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCC-C---CCCcceEEEeCCCCCCC--CCCceEEEEe
Q 023191 203 -ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-S---PFEYADVVTTTTHKSLR--GPRGAMIFFR 271 (286)
Q Consensus 203 -~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~---~~~~~D~v~~s~~K~l~--gp~gG~l~~~ 271 (286)
|+| +|...+ +++|+++|++|++++|+|+++........... . ......+++.|++|+|+ |.+-|+++++
T Consensus 162 ~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~ 241 (378)
T PRK07682 162 SPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAP 241 (378)
T ss_pred CCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcC
Confidence 666 665554 88999999999999999999764332211100 0 01124588999999885 4445999999
Q ss_pred cchhhhhc
Q 023191 272 KGVKEINK 279 (286)
Q Consensus 272 ~~~~~~~~ 279 (286)
+++.+..+
T Consensus 242 ~~~i~~l~ 249 (378)
T PRK07682 242 VYFSEAML 249 (378)
T ss_pred HHHHHHHH
Confidence 88776554
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=177.21 Aligned_cols=236 Identities=11% Similarity=0.105 Sum_probs=166.1
Q ss_pred cccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHH
Q 023191 26 PLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (286)
++..+...++..+.... ...+.++|..|++. +++.+.+++.+.+.... ..|+...+..++++++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~~a~~l~~ 82 (386)
T PRK09082 11 KLPNVGTTIFTVMSALA-AEHGAINLSQGFPDFDGPPYLVEALAYAMAAGH-------NQYPPMTGVAALREAIAAKTAR 82 (386)
T ss_pred HhhccCccHHHHHHHHH-hhCCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-------CCCCCCCCcHHHHHHHHHHHHH
Confidence 34445566666665543 23466899887764 46888888887765421 1234456778999999999999
Q ss_pred HCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCC
Q 023191 104 AFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 182 (286)
Q Consensus 104 ~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 182 (286)
++|.+.+. ..+|++|+|++ ++.+++.++++|||+|+++++.|.++ ...+...|.++..++ .+.+++.+
T Consensus 83 ~~~~~~~~-~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~--------~~~~~~~g~~~~~~~--~~~~~~~~ 151 (386)
T PRK09082 83 LYGRQYDA-DSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSY--------APAIELAGGRAVRVA--LQPPDFRV 151 (386)
T ss_pred HhCCCCCC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhh--------HHHHHHcCCEEEEEe--cCcccccC
Confidence 98885421 01599999998 88778899999999999999555443 334456676665555 44456899
Q ss_pred CHHHHHHHhhhcCCcEEEEc-CCC-CCCc---cCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC--C---CcceEE
Q 023191 183 DYDQLEKSATLFRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP--F---EYADVV 252 (286)
Q Consensus 183 d~e~l~~~i~~~~tk~v~i~-~~n-~g~~---~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~--~---~~~D~v 252 (286)
|++++++.+++ ++++|+++ ++| +|.. .++++|.++|++|++++|+|+++............. + ....++
T Consensus 152 d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~ 230 (386)
T PRK09082 152 DWQRFAAAISP-RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFV 230 (386)
T ss_pred CHHHHHHhcCc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEE
Confidence 99999999987 89999997 666 6644 568899999999999999999975433221111111 1 124588
Q ss_pred EeCCCCCCC--CCCceEEEEecchhhhhccC
Q 023191 253 TTTTHKSLR--GPRGAMIFFRKGVKEINKQG 281 (286)
Q Consensus 253 ~~s~~K~l~--gp~gG~l~~~~~~~~~~~~~ 281 (286)
+.|++|.|+ |.|.|++++++++.+..++.
T Consensus 231 ~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~ 261 (386)
T PRK09082 231 VSSFGKTYHVTGWKVGYCVAPAALSAEFRKV 261 (386)
T ss_pred EeechhhccchhhhhhhhhCCHHHHHHHHHH
Confidence 999999884 45569999988877665543
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=172.26 Aligned_cols=235 Identities=10% Similarity=0.093 Sum_probs=161.7
Q ss_pred ccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 023191 27 LEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (286)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (286)
+..+.+.++..+..... ..+.++|..+.+. .++.+.+++.+.+.... ..|+...+..++++++.+++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~ 77 (387)
T PRK07777 6 LRPFGTTIFAEMSALAV-RTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGV-------NQYPPGPGIPELRAAIAAQRRRR 77 (387)
T ss_pred hhhcCccHHHHHHHHHh-hCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHHHHHH
Confidence 45556666776666543 3467999877653 46667777766654321 12455567789999999999888
Q ss_pred CCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCC
Q 023191 105 FRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 183 (286)
Q Consensus 105 ~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d 183 (286)
+|.+.+. ..+|++|+|++ ++.+++.+++++||+|+++.+.|+.+ ...+...|..++.+++.-+..++.+|
T Consensus 78 ~g~~~~~-~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~d 148 (387)
T PRK07777 78 YGLEYDP-DTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSY--------AAVIAMAGAHRVPVPLVPDGRGFALD 148 (387)
T ss_pred hCCCCCC-CCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhh--------HHHHHHCCCEEEEeecCCccCCCcCC
Confidence 8875322 01599999999 88778889999999999999555443 33445566656555543221356799
Q ss_pred HHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccC----CCCCC-CCcceEEE
Q 023191 184 YDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAG----VIPSP-FEYADVVT 253 (286)
Q Consensus 184 ~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~----~~~~~-~~~~D~v~ 253 (286)
++++++.+.+ ++++|+++ ++| +|... ++++|.++|++|++++|+|+++..-..... +.... ..+.++++
T Consensus 149 ~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~ 227 (387)
T PRK07777 149 LDALRAAVTP-RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTI 227 (387)
T ss_pred HHHHHHhcCc-ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEE
Confidence 9999999877 89999997 666 66544 488999999999999999999753222111 11001 12367889
Q ss_pred eCCCCCCCCC--CceEEEEecchhhhhc
Q 023191 254 TTTHKSLRGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 254 ~s~~K~l~gp--~gG~l~~~~~~~~~~~ 279 (286)
.|++|.|+.| +.|++++++++.+..+
T Consensus 228 ~S~SK~~g~~GlRiG~~~~~~~l~~~~~ 255 (387)
T PRK07777 228 SSAAKTFNVTGWKIGWACGPAPLIAAVR 255 (387)
T ss_pred eechhhccCcCceeEEEecCHHHHHHHH
Confidence 9999988533 4499999887665544
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=176.58 Aligned_cols=208 Identities=22% Similarity=0.201 Sum_probs=145.0
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..+|+ .+|+.+ +++.+++.+.. .+ |+...+..+|++++++++. +++++ +|++|+|++
T Consensus 27 ~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~-~~------Y~~~~G~~~lr~~ia~~~~---~~~~~----~vi~t~G~~~ 91 (373)
T PRK07324 27 CIDSLTLEELLALAGKNP-EAFYQELGQKK-LT------YGWIEGSPEFKEAVASLYQ---NVKPE----NILQTNGATG 91 (373)
T ss_pred CCCCCcHHHHHhccCcch-HHHHHHHhcCC-cc------CCCCCCCHHHHHHHHHHhc---CCChh----hEEEcCChHH
Confidence 5677877877 356666 77766664421 12 3444566778866655543 35664 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.+++.+++++||+|+++. |.|..+...+...|.+++.++++.+ +++.+|++++++.+++ +||+|+++
T Consensus 92 al~~~~~~l~~~gd~Vl~~~--------P~y~~~~~~~~~~g~~v~~v~~~~~-~~~~~d~~~l~~~~~~-~~kli~i~~ 161 (373)
T PRK07324 92 ANFLVLYALVEPGDHVISVY--------PTYQQLYDIPESLGAEVDYWQLKEE-NGWLPDLDELRRLVRP-NTKLICINN 161 (373)
T ss_pred HHHHHHHHhCCCCCEEEEcC--------CCchhHHHHHHHcCCEEEEEecccc-cCCCCCHHHHHHhCCC-CCcEEEEeC
Confidence 88889999999999999998 4444444345567766666664322 3567999999998887 89999997
Q ss_pred CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCCC--CCCceEEEEecch
Q 023191 203 ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLR--GPRGAMIFFRKGV 274 (286)
Q Consensus 203 ~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l~--gp~gG~l~~~~~~ 274 (286)
|+| +|...+ +++|+++|++||+++|+|+++. +....+..+.... ...+++.|++|+++ |.+-|++++++++
T Consensus 162 p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~-~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~l 240 (373)
T PRK07324 162 ANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYR-PLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEV 240 (373)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccc-ccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHH
Confidence 776 777776 8899999999999999999953 3332211111111 13477899999875 5666999998777
Q ss_pred hhhhcc
Q 023191 275 KEINKQ 280 (286)
Q Consensus 275 ~~~~~~ 280 (286)
.+..++
T Consensus 241 i~~~~~ 246 (373)
T PRK07324 241 IDILRK 246 (373)
T ss_pred HHHHHH
Confidence 665554
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-21 Score=171.05 Aligned_cols=209 Identities=12% Similarity=0.079 Sum_probs=149.8
Q ss_pred ceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcce-eEEeCCChH-H
Q 023191 49 LELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGV-NVQSLSGSP-S 124 (286)
Q Consensus 49 i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~v~~~sG~~-a 124 (286)
++|..+++ ++++.+.+++.+..... ..|+...+..+|++++.+++.+.+|++.+. . +|++|+|++ +
T Consensus 3 ~~~~~g~p~~~~~~~~~~~~~~~~~~~--------~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~Iiit~Gs~~a 72 (350)
T TIGR03537 3 FDFGTGDPKEPTPPFIRKALIDAVPEV--------SQYPSALGTKALREAISGWFERRFGVKLDP--DAQVLPSAGSKEA 72 (350)
T ss_pred EeccCCCCCCCCCHHHHHHHHHHHhcc--------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEcCChHHH
Confidence 56666666 45788889887764321 123445677899999999998888863322 2 599999999 8
Q ss_pred HHHHHHHhcCCC---CeEEeccCCCCcccCccccccccccccceeeeEEEecccC-CCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 125 NFQVYTALLKPH---DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN-ESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 125 ~~~~l~a~~~~G---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
+.+++.+++++| |+|++++ |+|+.+...+...|.+++.++ .+ .+++.+|++++++++.+ ++|+++
T Consensus 73 i~~~~~~~~~~g~~~d~Vl~~~--------p~y~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~~~~-~~~~i~ 141 (350)
T TIGR03537 73 IFHFPLVFIDPEEDRRRVIFGT--------PGYPVYERGALFAGGEPTAVK--LKKEDGFLLRLEKVEKSILE-ETKIVW 141 (350)
T ss_pred HHHHHHHHcCCCCCCceEEEcC--------CCCcchHHHHHhcCCEEEEcc--cCcccCCccCHHHHHHhhhh-ccEEEE
Confidence 777888899987 6999999 555555556677887665555 43 24577999999999987 899999
Q ss_pred Ec-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC--C-cceEEEeCCCCCCC--CCCceEEEE
Q 023191 201 AG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF--E-YADVVTTTTHKSLR--GPRGAMIFF 270 (286)
Q Consensus 201 i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~--~-~~D~v~~s~~K~l~--gp~gG~l~~ 270 (286)
++ |+| +|...+ +++|+++|++||+++|+|+++...... ....... . ...+++.|++|+++ |.+.|+++.
T Consensus 142 i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~ 220 (350)
T TIGR03537 142 INYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFG-EPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAG 220 (350)
T ss_pred EeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccC-CCCCchhhcCcCCEEEEeecccccCCccccceeeec
Confidence 98 666 776666 889999999999999999996532221 1111111 1 13477889999874 445699988
Q ss_pred ecchhhhhc
Q 023191 271 RKGVKEINK 279 (286)
Q Consensus 271 ~~~~~~~~~ 279 (286)
++++.+..+
T Consensus 221 ~~~~~~~~~ 229 (350)
T TIGR03537 221 DEKLISFLR 229 (350)
T ss_pred CHHHHHHHH
Confidence 777665544
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-21 Score=174.81 Aligned_cols=206 Identities=14% Similarity=0.070 Sum_probs=150.1
Q ss_pred cCceecCCCC------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC
Q 023191 47 KGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120 (286)
Q Consensus 47 ~~i~L~~~e~------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s 120 (286)
+.|+|..|++ ++++++++++.+++......+ |+...+..++++++.+++.+.+|.+.+. .+|++|+
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~------Y~~~~G~~~lr~aia~~~~~~~~~~~~~--~~v~it~ 124 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNS------YSTCVGLLPARRAIAEYLSRDLPYELST--DDIYLTA 124 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCC------CCCCccCHHHHHHHHHHHhhccCCCCCh--hhEEEeC
Confidence 6799998876 247899999988876522112 3445678899999999988777664332 3699999
Q ss_pred ChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEE
Q 023191 121 GSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (286)
Q Consensus 121 G~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v 199 (286)
|++ ++.+++.++++|||+|++++ |.|+.|...+.+.|.+++.+++..+ +++.+|++++++++++ +++++
T Consensus 125 G~~~al~l~~~~l~~~Gd~Vlv~~--------P~y~~y~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~i 194 (430)
T PLN00145 125 GCAQAIEIIMSVLAQPGANILLPR--------PGYPLYEARAVFSGLEVRHFDLLPE-RGWEVDLEGVEALADE-NTVAM 194 (430)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEcC--------CCCccHHHHHHHcCCEEEEeeCCcc-cCCcCCHHHHHHHhCc-CceEE
Confidence 999 88878899999999999999 5555444445566766666654322 4689999999999887 88988
Q ss_pred EEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC---Cc--ceEEEeCCCCCC--CCCCceE
Q 023191 200 VAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---EY--ADVVTTTTHKSL--RGPRGAM 267 (286)
Q Consensus 200 ~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~---~~--~D~v~~s~~K~l--~gp~gG~ 267 (286)
+++ |+| +|...+ +++|+++|+++|++||+|+++.. ....+....++ .. .-+++.|++|.| .|+|-|+
T Consensus 195 ~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~ 273 (430)
T PLN00145 195 VIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDH-LTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGW 273 (430)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchh-hccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEE
Confidence 887 766 776666 77889999999999999999643 22222111111 11 237799999985 5666799
Q ss_pred EEEe
Q 023191 268 IFFR 271 (286)
Q Consensus 268 l~~~ 271 (286)
++..
T Consensus 274 iv~~ 277 (430)
T PLN00145 274 IATC 277 (430)
T ss_pred EEEe
Confidence 9974
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=172.47 Aligned_cols=242 Identities=15% Similarity=0.108 Sum_probs=165.2
Q ss_pred chhhccccccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHH
Q 023191 19 WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESL 96 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (286)
+.+.|++++..........+.+......+.++|..++++ +++.+.+++.+.+.... ..|.+..+.++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ 75 (391)
T PRK07309 3 LTKRFNKQLDKIEVSLIRQFDQSISDIPGILKLTLGEPDFTTPDHVKEAAKRAIDANQ-------SHYTGMAGLLELRQA 75 (391)
T ss_pred hhhHHHhhhhhcCccHHHHHHHHHHhcCCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHH
Confidence 345555566555555555555433222567899888774 47778888887665321 124445667899999
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
+++++...+|+..+. ..+|++|+|++ ++.+++.+++++||+|++++|.|.++ ...++..|.++..++ .
T Consensus 76 ia~~~~~~~~~~~~~-~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~--------~~~~~~~g~~~~~~~--~ 144 (391)
T PRK07309 76 AADFVKEKYNLDYAP-ENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGY--------EPIVNLVGAEIVEID--T 144 (391)
T ss_pred HHHHHHHHhCCCCCC-CCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcch--------HHHHHHcCCEEEEEe--c
Confidence 999998887763210 02599999998 88778899999999999999555544 334456676665554 4
Q ss_pred CCCCCCCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-
Q 023191 176 NESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE- 247 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~- 247 (286)
+.+++.+|++++++++++ .++++|+++ |+| +|... ++++|+++|++|++++|+|+++..-....... .++.
T Consensus 145 ~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~-~~~~~ 223 (391)
T PRK07309 145 TENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPH-VSIAE 223 (391)
T ss_pred CCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCC-CCHHH
Confidence 434578999999998864 258899987 777 67554 48889999999999999999965322211111 1111
Q ss_pred ---cceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 248 ---YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 248 ---~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
...+++.|++|.|+ |.+.|++++++++.+..+
T Consensus 224 ~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~ 260 (391)
T PRK07309 224 YLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLI 260 (391)
T ss_pred hccCCEEEEecChhhccCccceeEEEEeCHHHHHHHH
Confidence 13378999999874 445599999988765554
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=172.45 Aligned_cols=209 Identities=13% Similarity=0.108 Sum_probs=142.6
Q ss_pred ceecCCCC-C-CCHHHHHHhccccccCCCCCCCCCcccCC--cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChH
Q 023191 49 LELIPSEN-F-TSVSVMQAVGSVMTNKYSEGYPGARYYGG--NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSP 123 (286)
Q Consensus 49 i~L~~~e~-~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~ 123 (286)
++|..+++ . +|+.+.+++.+. ... .+|.. +.. ..+..++++++++++++++|++.+. +.+++ |++
T Consensus 23 ~~l~~g~~~~~~p~~~~~~~~~~--~~~-~~~~~---~~~~~~~g~~~~~~~~~~~la~~~g~~~~~----v~~~~~g~~ 92 (398)
T cd00613 23 SFLGSGTYKHNPPAVIKRNILEN--EFY-TAYTP---YQPEISQGRLQALFELQTMLCELTGMDVAN----ASLQDEATA 92 (398)
T ss_pred ccccccccCCcCcHHHHHHhccc--cCc-ccCCC---CChhhhhhHHHHHHHHHHHHHHHHCCCccc----eeccCchHH
Confidence 67777766 3 345554445554 111 12211 111 4667799999999999999987643 54544 555
Q ss_pred -HHHHHHHHhcCC--CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 124 -SNFQVYTALLKP--HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 124 -a~~~~l~a~~~~--Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
++.+++.+++.+ ||+|+++++.|+++...+..... ..|.+++.++ .+ +++.+|++++++.+.+ +|++|+
T Consensus 93 ~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~----~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~t~~vi 164 (398)
T cd00613 93 AAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGE----PLGIEVVEVP--SD-EGGTVDLEALKEEVSE-EVAALM 164 (398)
T ss_pred HHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcc----cCCcEEEEec--cC-CCCCcCHHHHHHhcCC-CeEEEE
Confidence 555455666776 99999999888887543321111 1124555555 33 4568999999999987 899999
Q ss_pred Ec-CCCCCCccCH-HHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCC-----CCCCceEEEEecc
Q 023191 201 AG-ASAYARLYDY-ERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL-----RGPRGAMIFFRKG 273 (286)
Q Consensus 201 i~-~~n~g~~~~l-~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l-----~gp~gG~l~~~~~ 273 (286)
++ ++.+|...++ ++|.++|++||+++|+|++|+.+......... ++|++++|+|||+ +||++|+++++++
T Consensus 165 v~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~---~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~ 241 (398)
T cd00613 165 VQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEY---GADIVVGNLQKTGVPHGGGGPGAGFFAVKKE 241 (398)
T ss_pred EECCCCCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHc---CCCEEEeeccccCCCCCCCCCceeEEEEhhh
Confidence 97 4446777775 99999999999999999998766533222222 4899999999998 2456699999887
Q ss_pred hhhhh
Q 023191 274 VKEIN 278 (286)
Q Consensus 274 ~~~~~ 278 (286)
+.+..
T Consensus 242 ~~~~~ 246 (398)
T cd00613 242 LVRFL 246 (398)
T ss_pred hHhhC
Confidence 76653
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=170.89 Aligned_cols=228 Identities=14% Similarity=0.089 Sum_probs=154.3
Q ss_pred cccChHHHHHHHHHHHHH---HcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHH
Q 023191 28 EVVDPEIADIIEHEKARQ---WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRAL 102 (286)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~---~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (286)
..+++..+..+.....+. .+.|+|..+++ ++++.+.+++.+.+...... .|+...+..+++ +.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~------~y~~~~g~~~lr----~~ia 76 (380)
T PRK06225 7 AKVPPSGFKTSNEFFDYVFKDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYC------KYPPPEGFPELR----ELIL 76 (380)
T ss_pred cccCcchhhhHHHHHHHHhhcCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCC------CCCCCcchHHHH----HHHH
Confidence 345555555555533222 46788988877 46889999998887642211 133344555565 6777
Q ss_pred HHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCC
Q 023191 103 EAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY 181 (286)
Q Consensus 103 ~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 181 (286)
+++|++++ +|++++|++ ++..++.+++.+||+|+++++.| ..+...+...|..++.+++..+.+++.
T Consensus 77 ~~l~~~~~----~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y--------~~~~~~~~~~g~~~~~v~~~~~~~~~~ 144 (380)
T PRK06225 77 KDLGLDDD----EALITAGATESLYLVMRAFLSPGDNAVTPDPGY--------LIIDNFASRFGAEVIEVPIYSEECNYK 144 (380)
T ss_pred HhcCCCCC----cEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCC--------cchHHHHHHhCceEEeeccccccCCcc
Confidence 78898775 599999999 87778889999999999999444 333333455676665555432223578
Q ss_pred CCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEEeC
Q 023191 182 IDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVTTT 255 (286)
Q Consensus 182 ~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s 255 (286)
+|++++++.+++ ++++|+++ |+| +|... ++++|.++|+++|+++|+|+++. ...........+. ...+++.|
T Consensus 145 ~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~i~~~s 222 (380)
T PRK06225 145 LTPELVKENMDE-NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYR-DFAREHTLAAEYAPEHTVTSYS 222 (380)
T ss_pred CCHHHHHhhcCC-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHH-HHhccCCchhhcCCCCEEEEee
Confidence 999999999987 89999886 666 66544 48899999999999999999953 1111100000111 24577889
Q ss_pred CCCCCC--CCCceEEEEecchhhhhc
Q 023191 256 THKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 256 ~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
++|+|+ |.+.|++++++++.+..+
T Consensus 223 ~SK~~g~~G~RiG~i~~~~~l~~~~~ 248 (380)
T PRK06225 223 FSKIFGMAGLRIGAVVATPDLIEVVK 248 (380)
T ss_pred chhhcCCccceeEEEecCHHHHHHHH
Confidence 999884 334599999887766544
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=170.63 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=158.6
Q ss_pred cChHHHHHHHHHHHHH-----HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHH
Q 023191 30 VDPEIADIIEHEKARQ-----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRAL 102 (286)
Q Consensus 30 ~~~~~~~~~~~~~~~~-----~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (286)
.+.+.+..+....... .+.++|..|+++ +|+.+++++.+.+... ..|+...+..++++++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~--------~~Y~~~~G~~~lr~aia~~~~ 78 (393)
T TIGR03538 7 LQPYPFEKLAALLAGVTPPASKPPIALSIGEPKHPTPAFVLEALRENLHGL--------STYPTTKGLPELRQAIARWLE 78 (393)
T ss_pred CCccHHHHHHHHHHhhhhhcCCCeEEecCCCCCCCCCHHHHHHHHHHhhcc--------CCCCCCCCCHHHHHHHHHHHH
Confidence 3444455454444322 467899988884 6888888888765321 113445677899999999998
Q ss_pred HHCCCC----CCCcceeEEeCCChH-HHHHHHHHhcCCCCe--EEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 103 EAFRLD----PEKWGVNVQSLSGSP-SNFQVYTALLKPHDR--IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 103 ~~~g~~----~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
+.+|.+ +++ +|++|+|++ ++..++.++++|||. |++++ |+|..|...+...|.+++.++ +
T Consensus 79 ~~~~~~~~~~~~~---~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~--------P~y~~~~~~~~~~g~~~~~v~--~ 145 (393)
T TIGR03538 79 RRFDLPTGVDPER---HVLPVNGTREALFAFAQAVINPGQAPLVVMPN--------PFYQIYEGAALLAGAEPYFLN--C 145 (393)
T ss_pred HhhCCcccCCCCc---eEEECCCcHHHHHHHHHHHcCCCCcceEEecC--------CCCcchHHHHHhcCCeEEEee--c
Confidence 887754 322 599999999 888788999999996 88888 555555545566776666565 4
Q ss_pred CC-CCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccC-CCCCC---
Q 023191 176 NE-STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSP--- 245 (286)
Q Consensus 176 ~~-~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~~--- 245 (286)
+. +++.+|++++++++.+ ++|+|+++ |+| +|...+ +++|+++|++|+++||+|+++..-..... .....
T Consensus 146 ~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~ 224 (393)
T TIGR03538 146 TAENGFLPDFDAVPESVWR-RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQA 224 (393)
T ss_pred cccCCCCCCHHHHHHHHhh-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHh
Confidence 32 3478999999998877 89999997 777 776555 78889999999999999999653221111 01000
Q ss_pred ---C---C-cceEEEeCCCCCC--CCCCceEEEEecchhhhhc
Q 023191 246 ---F---E-YADVVTTTTHKSL--RGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 246 ---~---~-~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~~~ 279 (286)
. . ..-+++.|++|.| .|.+-|++++++++.+...
T Consensus 225 ~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~ 267 (393)
T TIGR03538 225 AAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFL 267 (393)
T ss_pred cccccccccccEEEEecchhhcCCcccceEEEecCHHHHHHHH
Confidence 0 0 0227799999964 5666699999887665443
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=163.34 Aligned_cols=206 Identities=18% Similarity=0.128 Sum_probs=154.7
Q ss_pred cCceecCCCC------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEe
Q 023191 47 KGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQS 118 (286)
Q Consensus 47 ~~i~L~~~e~------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~ 118 (286)
..|.|..|++ .+++++.+|+.+++.....++| +++.+....|+++.+++.+-... +++ +|++
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Y------aps~G~~~AR~AVAeYl~~~l~~kl~a~----DV~l 131 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGY------APSVGILPARRAVAEYLNRDLPNKLTAD----DVVL 131 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCc------CCccccHHHHHHHHHHhhcCCCCccCcC----ceEE
Confidence 4578888776 3689999999999987554444 55577777777777765544433 444 4999
Q ss_pred CCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCc
Q 023191 119 LSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 197 (286)
Q Consensus 119 ~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk 197 (286)
|+|.+ |+..++.++.+||..||++. |+|+.|..-+...|.+++...+ +.+++|++|++.+|+++++ ||.
T Consensus 132 tsGC~qAIe~~i~~LA~p~aNILlPr--------PGfp~Y~~~a~~~~lEVR~ydl-LPe~~weIDL~~veal~DE-NT~ 201 (447)
T KOG0259|consen 132 TSGCSQAIELAISSLANPGANILLPR--------PGFPLYDTRAIYSGLEVRYYDL-LPEKDWEIDLDGVEALADE-NTV 201 (447)
T ss_pred eccchHHHHHHHHHhcCCCCceecCC--------CCCchHHHhhhhcCceeEeecc-cCcccceechHHHHHhhcc-Cee
Confidence 99999 99889999999999999999 8888888777788877766654 3446899999999999998 998
Q ss_pred EEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-c---ce-EEEeCCCCCC--CCCCc
Q 023191 198 LIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-Y---AD-VVTTTTHKSL--RGPRG 265 (286)
Q Consensus 198 ~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~---~D-~v~~s~~K~l--~gp~g 265 (286)
++++. |+| .|.+. -+++|+++|++++++||.|+.+..-.+. +..-.++. . +- +.+++.+|-+ .|||-
T Consensus 202 AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg-~~pfvpmg~fssiVPVitlggisKrW~VPGWRl 280 (447)
T KOG0259|consen 202 AIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFG-DKPFVPMGKFSSIVPVITLGGISKRWIVPGWRL 280 (447)
T ss_pred EEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecC-CCCccchhhccccCceEeecccccccccCCcee
Confidence 87775 777 66444 4889999999999999999995433322 22111221 1 22 4577888944 88899
Q ss_pred eEEEEecc
Q 023191 266 AMIFFRKG 273 (286)
Q Consensus 266 G~l~~~~~ 273 (286)
|++..++.
T Consensus 281 GWi~~hD~ 288 (447)
T KOG0259|consen 281 GWIALHDP 288 (447)
T ss_pred eeEEEecc
Confidence 99999874
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=176.74 Aligned_cols=235 Identities=12% Similarity=0.082 Sum_probs=161.9
Q ss_pred cccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC
Q 023191 28 EVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL 107 (286)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~ 107 (286)
.+.++..++.+.... ...+.|+|.++.+..|..+++.+.+.+.+.. + .....|+...+..++++++.+++.+..|.
T Consensus 112 ~~~~~~~~r~v~~~~-~~p~~i~~~~~~~~fp~~~i~~a~~~l~~~~--~-~~~~~Y~~s~G~~~lReaIA~~~~~r~g~ 187 (534)
T PLN02231 112 GQQPITFFREVLALC-DHPSLLDKSETHGLFSADAIERAWQILDQIP--G-RATGAYSHSQGIKGLRDAIAAGIEARDGF 187 (534)
T ss_pred CCCccHHHHHHHHhc-cCCccCCCCCccccCCHHHHHHHHHHHHhcC--C-ccccCcCCCCCcHHHHHHHHHHHHhccCC
Confidence 445666666665542 3346788887776667777777777665421 1 01223677789999999999999988776
Q ss_pred CCCCcceeEEeCCChH-HHHHHHHHhc-CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-CCCCCCH
Q 023191 108 DPEKWGVNVQSLSGSP-SNFQVYTALL-KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDY 184 (286)
Q Consensus 108 ~~~~~~~~v~~~sG~~-a~~~~l~a~~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~ 184 (286)
+.+. .+|++|+|++ ++..++++++ .+||.|+++. |.|+.|...+...|..++.++ ++. ++|.+|+
T Consensus 188 ~~~p--e~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~--------P~Y~~y~~~~~~~g~~~v~~~--l~~~~~~~~d~ 255 (534)
T PLN02231 188 PADP--NDIFLTDGASPAVHMMMQLLIRSEKDGILCPI--------PQYPLYSASIALHGGTLVPYY--LDEATGWGLEI 255 (534)
T ss_pred CCCc--ccEEEeCCHHHHHHHHHHHhccCCCCEEEEeC--------CCChhHHHHHHHcCCEEEEEe--cCcccCCCCCH
Confidence 4332 4699999999 8887888888 4899999999 666655556667776665555 443 3579999
Q ss_pred HHHHHHhhhc-----CCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccC-CCCC--------C
Q 023191 185 DQLEKSATLF-----RPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS--------P 245 (286)
Q Consensus 185 e~l~~~i~~~-----~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~--------~ 245 (286)
++|++.+++. ++|+++++ |+| +|.+. .+++|+++|++||++||+|+++..-....+ .... +
T Consensus 256 ~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g 335 (534)
T PLN02231 256 SELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMG 335 (534)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhc
Confidence 9999988652 57887776 777 77555 477889999999999999999653222111 1111 0
Q ss_pred CC--cc-eEEEeCCCCCC---CCCCceEEEE---ecchhhhh
Q 023191 246 FE--YA-DVVTTTTHKSL---RGPRGAMIFF---RKGVKEIN 278 (286)
Q Consensus 246 ~~--~~-D~v~~s~~K~l---~gp~gG~l~~---~~~~~~~~ 278 (286)
.. .. -+.+.|++|.+ +|.++|++.+ ++++.+..
T Consensus 336 ~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l 377 (534)
T PLN02231 336 YGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQI 377 (534)
T ss_pred cccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHH
Confidence 00 11 25578999965 4888899976 45555543
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=163.70 Aligned_cols=207 Identities=20% Similarity=0.220 Sum_probs=149.9
Q ss_pred cCceecCCC--CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSE--NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e--~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.+.|-..+ .++||+|++|+.+.+.+.- .||+. ..+++-+++.+|.++.++.+..+ ..|+++.|.-
T Consensus 26 DvlPmWVADMDf~~pp~i~~Al~~rvdhGv-fGY~~--------~~~~~~~ai~~w~~~r~~~~i~~--e~i~~~p~VVp 94 (388)
T COG1168 26 DVLPMWVADMDFPTPPEIIEALRERVDHGV-FGYPY--------GSDELYAAIAHWFKQRHQWEIKP--EWIVFVPGVVP 94 (388)
T ss_pred CcceeeeecccCCCCHHHHHHHHHHHhcCC-CCCCC--------CCHHHHHHHHHHHHHhcCCCCCc--ceEEEcCcchH
Confidence 345554333 3579999999999987741 15542 23457778889999999985433 3499999988
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..+++++.+|||.|++..|.|+.+ ...+...|.++...|+..+...+.+|+++|++.+.+.++|++++|
T Consensus 95 gi~~~I~~~T~~gd~Vvi~tPvY~PF--------~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCn 166 (388)
T COG1168 95 GISLAIRALTKPGDGVVIQTPVYPPF--------YNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCN 166 (388)
T ss_pred hHHHHHHHhCcCCCeeEecCCCchHH--------HHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeC
Confidence 88779999999999999999544444 335667787777777655544568899999999988678999998
Q ss_pred CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC---C--cce--EEEeCCCCCC--CCCCceEEE
Q 023191 203 ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---E--YAD--VVTTTTHKSL--RGPRGAMIF 269 (286)
Q Consensus 203 ~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~---~--~~D--~v~~s~~K~l--~gp~gG~l~ 269 (286)
|+| +|+++ ++.+|.+||++||+.||+|+.|+- .+..+....++ . .+| +++.|++|+| .|-+.+.++
T Consensus 167 PHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaD-lv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~I 245 (388)
T COG1168 167 PHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHAD-LVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYII 245 (388)
T ss_pred CCCCCCccccHHHHHHHHHHHHHcCCEEEeeccccc-ccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEE
Confidence 888 77554 688999999999999999999863 33333211121 1 244 6788899988 455556666
Q ss_pred Eecc
Q 023191 270 FRKG 273 (286)
Q Consensus 270 ~~~~ 273 (286)
+.++
T Consensus 246 i~n~ 249 (388)
T COG1168 246 ISNR 249 (388)
T ss_pred ecCH
Confidence 6553
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=172.17 Aligned_cols=210 Identities=19% Similarity=0.224 Sum_probs=148.7
Q ss_pred HcCceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 46 WKGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 46 ~~~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
++.|+|..++. .++|++++++.+++.. +..+|++.++..+. ..+..++++.+++++|.+. .+++++|+
T Consensus 38 ~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~-~~~~~~~s~~~~G~---~~~~~~le~~ia~~~g~~~-----~ii~~~~~ 108 (393)
T TIGR01822 38 REVLNFCANNYLGLSSHPDLIQAAKDALDE-HGFGMSSVRFICGT---QDIHKELEAKIAAFLGTED-----TILYASCF 108 (393)
T ss_pred ceEEEeeCCCccccCCCHHHHHHHHHHHHH-hCCCCCCcCcccCC---hHHHHHHHHHHHHHhCCCc-----EEEECchH
Confidence 35688888874 3588999999998865 32355555544332 2333445588889999753 36665555
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh---c--CCc
Q 023191 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---F--RPK 197 (286)
Q Consensus 123 ~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~--~tk 197 (286)
.++..++.+++++||+|++.++.|+++.. .+...+... +.+ ..+|++++++.+++ . +|+
T Consensus 109 ~a~~~~~~~l~~~gd~vi~~~~~~~s~~~--------~~~~~~~~~--~~~------~~~d~~~l~~~i~~~~~~~~~~~ 172 (393)
T TIGR01822 109 DANGGLFETLLGAEDAIISDALNHASIID--------GVRLCKAKR--YRY------ANNDMADLEAQLKEARAAGARHR 172 (393)
T ss_pred HHHHHHHHHhCCCCCEEEEeccccHHHHH--------HHHhcCCce--EEe------CCCCHHHHHHHHHhhhhcCCCce
Confidence 57777889999999999999988777643 223333222 211 13789999998874 2 577
Q ss_pred EEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCC----CCCC-CcceEEEeCCCCCCCCCCceEEEE
Q 023191 198 LIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI----PSPF-EYADVVTTTTHKSLRGPRGAMIFF 270 (286)
Q Consensus 198 ~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~----~~~~-~~~D~v~~s~~K~l~gp~gG~l~~ 270 (286)
+|+++ ..| +|...|+++|+++|++||+++|+|++|+.|....... ...+ ..+|++++|+||+++|+++|++++
T Consensus 173 ~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~ 252 (393)
T TIGR01822 173 LIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTA 252 (393)
T ss_pred EEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEe
Confidence 77776 444 7888999999999999999999999998776532110 0111 148999999999999999999999
Q ss_pred ecchhhhhcc
Q 023191 271 RKGVKEINKQ 280 (286)
Q Consensus 271 ~~~~~~~~~~ 280 (286)
++++.+..++
T Consensus 253 ~~~~~~~l~~ 262 (393)
T TIGR01822 253 RKEVVELLRQ 262 (393)
T ss_pred CHHHHHHHHH
Confidence 9887776553
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=169.99 Aligned_cols=167 Identities=22% Similarity=0.222 Sum_probs=124.8
Q ss_pred HHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 95 SLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 95 ~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
+++++.+++++|.+. .+++++|++ ++.+++.++++|||+|+++++.|.++.. .+...|..++.++.
T Consensus 62 ~~~~~~~A~~~ga~~-----~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~--------~~~~~g~~~~~v~~ 128 (294)
T cd00615 62 KEAQELAARAFGAKH-----TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVIN--------GLVLSGAVPVYLKP 128 (294)
T ss_pred HHHHHHHHHHhCCCC-----EEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHH--------HHHHCCCEEEEecC
Confidence 345588889999764 366688988 8888899999999999999988777654 23356666665654
Q ss_pred ccCCC---CCCCCHHHHHHHhhh-cCCcEEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC-C-
Q 023191 174 RLNES---TGYIDYDQLEKSATL-FRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-F- 246 (286)
Q Consensus 174 ~~~~~---~~~~d~e~l~~~i~~-~~tk~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~-~- 246 (286)
..+.+ .+.+|++++++.+++ .++++|+++.+| +|...|+++|+++|+++|+++++|+||+.+....+..+.. .
T Consensus 129 ~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~ 208 (294)
T cd00615 129 ERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM 208 (294)
T ss_pred ccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh
Confidence 33311 137899999999975 368999988445 7888999999999999999999999988654322211111 1
Q ss_pred CcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 247 EYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 247 ~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
.++|+++.|+||+++|+++ |++.++++.
T Consensus 209 ~~~div~~S~hK~l~g~~~~~~l~~~~~~ 237 (294)
T cd00615 209 AGADIVVQSTHKTLPALTQGSMIHVKGDL 237 (294)
T ss_pred cCCcEEEEchhcccchHhHHHHHHhCCCc
Confidence 1599999999999999876 888787663
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=172.82 Aligned_cols=208 Identities=13% Similarity=0.094 Sum_probs=149.3
Q ss_pred HcCceecCCCCC------CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC
Q 023191 46 WKGLELIPSENF------TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL 119 (286)
Q Consensus 46 ~~~i~L~~~e~~------~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~ 119 (286)
++.++|..|++. +++++.+++.+.+..... ..|+...+..++++++.+++.+.++.+.+. .+|++|
T Consensus 66 ~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~--~~I~it 137 (462)
T PLN02187 66 KTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKG------NSYGPGAGILPARRAVADYMNRDLPHKLTP--EDIFLT 137 (462)
T ss_pred CCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCCCCChHHHHHHHHHHHHHhcCCCCCc--ccEEEe
Confidence 367889888652 467888988887754211 124556778899999999998877653322 369999
Q ss_pred CChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
+|++ ++..++.++++|||+|++++ |.|+.|...+...|.+++.+++. ..+++.+|++++++++++ ++++
T Consensus 138 ~G~~~al~~~~~~l~~pGd~Vlv~~--------P~y~~y~~~~~~~g~~~~~~~l~-~~~~~~~d~~~l~~~~~~-~~~~ 207 (462)
T PLN02187 138 AGCNQGIEIVFESLARPNANILLPR--------PGFPHYDARAAYSGLEVRKFDLL-PEKEWEIDLEGIEAIADE-NTVA 207 (462)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeC--------CCCccHHHHHHHcCCEEEEEeCc-cccCCccCHHHHHHhcCC-CcEE
Confidence 9999 88879999999999999999 55554444556777777666643 224689999999999877 8888
Q ss_pred EEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC---c--ceEEEeCCCCCC--CCCCce
Q 023191 199 IVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE---Y--ADVVTTTTHKSL--RGPRGA 266 (286)
Q Consensus 199 v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~---~--~D~v~~s~~K~l--~gp~gG 266 (286)
++++ |+| +|...+ +++|+++|++|+++||+|+++.. ....+....++. . .-+++.|++|.| .|.|-|
T Consensus 208 v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~-l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG 286 (462)
T PLN02187 208 MVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDR-TIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIG 286 (462)
T ss_pred EEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccc-cccCCCCceeHHHhccCCcEEEEecchhhcCCccceeE
Confidence 8887 777 776655 78889999999999999999643 222111111111 1 136789999986 455669
Q ss_pred EEEEec
Q 023191 267 MIFFRK 272 (286)
Q Consensus 267 ~l~~~~ 272 (286)
++++.+
T Consensus 287 ~~v~~~ 292 (462)
T PLN02187 287 WIALND 292 (462)
T ss_pred EEEecC
Confidence 999853
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-21 Score=173.97 Aligned_cols=210 Identities=13% Similarity=0.083 Sum_probs=141.1
Q ss_pred Cceec-CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 48 GLELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 48 ~i~L~-~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
.+.|+ .+-.++|+.+.+++.+++.. +..+....+ +.+......+.+..++ + +++|++++ +|++++|++ ++
T Consensus 28 ~iyld~~a~g~~p~~v~~a~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~l~g~~~~----~v~~~~~~t~~l 99 (406)
T TIGR01814 28 VIYLDGNSLGLMPKAARNALKEELDK-WAKIAIRGH-NTGKAPWFTLDESLLK-L-RLVGAKED----EVVVMNTLTINL 99 (406)
T ss_pred cEEecCCCcCcCcHHHHHHHHHHHHH-HHHhhhccC-ccCCCChhhhhhhhcc-c-cccCCCCC----cEEEeCCchHHH
Confidence 46776 44446789999999877654 211111111 1111111223333333 4 78999775 499999988 66
Q ss_pred HHHHHHhcCCCC---eEEeccCCCCcccCccccccccccccceeeeE--EEecccCCCCCCCCHHHHHHHhh--hcCCcE
Q 023191 126 FQVYTALLKPHD---RIMALDLPHGGHLSHGYQTDTKKISAVSIFFE--TMPYRLNESTGYIDYDQLEKSAT--LFRPKL 198 (286)
Q Consensus 126 ~~~l~a~~~~Gd---~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~v~~~~~~~~~~~d~e~l~~~i~--~~~tk~ 198 (286)
..++.+++++|+ .|++.+.+|++...++.. .+...|.+++ .+.++.+ +++.+|++++++.++ ..+|++
T Consensus 100 ~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~----~~~~~g~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~~~~~t~l 174 (406)
T TIGR01814 100 HLLLASFYKPTPKRYKILLEAKAFPSDHYAIES----QLQLHGLTVEESMVQIEPR-EEETLRLEDILDTIEKNGDDIAV 174 (406)
T ss_pred HHHHHHhcCCcCCccEEEecCCCCChHHHHHHH----HHHhcCCCcccceEEeccC-CCCccCHHHHHHHHHhcCCCeEE
Confidence 657788776653 677777888875443321 1122343331 1222233 356789999998875 127899
Q ss_pred EEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 199 IVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 199 v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
|+++ .+| +|...|+++|.++|+++|+++++|++|++|.++.++.... +|++++|+||||+||+||+++++++
T Consensus 175 v~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~g---vD~~~~s~hK~l~g~pG~~l~v~~~ 248 (406)
T TIGR01814 175 ILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWG---VDFACWCTYKYLNAGPGAGAFVHEK 248 (406)
T ss_pred EEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCC---CCEEEEcCccccCCCCCeEEEEehh
Confidence 9887 444 7899999999999999999999999999999988776655 9999999999998766766666554
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=169.59 Aligned_cols=207 Identities=13% Similarity=0.053 Sum_probs=147.7
Q ss_pred HcCceecCCCC------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC
Q 023191 46 WKGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL 119 (286)
Q Consensus 46 ~~~i~L~~~e~------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~ 119 (286)
.+.|+|..|++ ++|+.+++++.+.+..... ..|+...+..++++++.+++.+.+|.+.+. .+|++|
T Consensus 32 ~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~------~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~I~it 103 (409)
T PLN00143 32 RLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKF------NSYAPTGGILPARRAIADYLSNDLPYQLSP--DDVYLT 103 (409)
T ss_pred CceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCC------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCH--hhEEEe
Confidence 46789988776 4688888998887754211 114445677889999999998877653322 369999
Q ss_pred CChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
+|++ ++..++.++++|||.|++++ |.|+.+...+...|.++..+++. +.+++.+|++++++++.+ ++++
T Consensus 104 ~G~~~al~~~~~~l~~~gd~v~v~~--------P~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~~~~-~~~~ 173 (409)
T PLN00143 104 LGCKHAAEIIIKVLARPEANILLPR--------PGFPDVETYAIFHHLEIRHFDLL-PEKGWEVDLDAVEAIADE-NTIA 173 (409)
T ss_pred cChHHHHHHHHHHHcCCCCEEEEcC--------CCCcCHHHHHHHcCCEEEEEecc-CCCCCcCCHHHHHHhccc-CCEE
Confidence 9999 88879999999999999999 55544444455677666556542 224578999999998876 7888
Q ss_pred EEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC---CCc--ceEEEeCCCCCC--CCCCce
Q 023191 199 IVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---FEY--ADVVTTTTHKSL--RGPRGA 266 (286)
Q Consensus 199 v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~---~~~--~D~v~~s~~K~l--~gp~gG 266 (286)
++++ |+| +|...+ +++|+++|++|++++|+|+++. .....+....+ +.. .-+++.|++|.| .|.+-|
T Consensus 174 ~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG 252 (409)
T PLN00143 174 MVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYG-HIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLG 252 (409)
T ss_pred EEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEcccc-ccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceE
Confidence 8886 777 776665 7788899999999999999964 32222211111 111 236789999985 555669
Q ss_pred EEEEe
Q 023191 267 MIFFR 271 (286)
Q Consensus 267 ~l~~~ 271 (286)
++++.
T Consensus 253 ~~v~~ 257 (409)
T PLN00143 253 WLVTC 257 (409)
T ss_pred EEEee
Confidence 99984
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-20 Score=169.51 Aligned_cols=198 Identities=9% Similarity=0.010 Sum_probs=143.1
Q ss_pred CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC-C-CCcceeEEeCCChH-HHHHHHHHh
Q 023191 56 NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-P-EKWGVNVQSLSGSP-SNFQVYTAL 132 (286)
Q Consensus 56 ~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~-~-~~~~~~v~~~sG~~-a~~~~l~a~ 132 (286)
.++.+++.+++...+...+ +++.. . ....++++.+++++++++|++ + ++ .-..+|+|++ ++..++.+.
T Consensus 51 t~~~p~~~~~~~~~l~~~~--~np~s---~--~~~~~le~~~~~~la~llg~~~~~~~--~~g~~TsGgTEAn~~al~~a 121 (431)
T TIGR01788 51 TWMEPEARKLMDETINKNM--IDKDE---Y--PQTAEIENRCVNMLADLWHAPAKDAE--AVGTSTIGSSEAIMLGGLAM 121 (431)
T ss_pred CCCCHHHHHHHHHHHhcCC--CCccc---C--ccHHHHHHHHHHHHHHHhCCCCCCCC--CeEEEechHHHHHHHHHHHH
Confidence 3567788899888886433 33322 1 223489999999999999997 3 33 1233478888 777666543
Q ss_pred c--------CCC-----CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEE
Q 023191 133 L--------KPH-----DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (286)
Q Consensus 133 ~--------~~G-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v 199 (286)
. +.| -.|++++.+|.++... +...|.+++.+| ++++++.+|+++|++++++ +|.+|
T Consensus 122 r~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka--------~~~lg~~v~~i~--~d~~~~~vd~~~L~~~i~~-~t~lV 190 (431)
T TIGR01788 122 KWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKF--------ARYFDVELREVP--MDPGRYVIDPEQVVEAVDE-NTIGV 190 (431)
T ss_pred HHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHH--------HHHcCceeEEEe--cCCCceeeCHHHHHHHHhh-CCeEE
Confidence 2 112 3688888888877542 334565566665 5533468999999999988 88888
Q ss_pred EEc-CCC-CCCccCHHHHHHHHHhc------CCEEEEeccccccccccCCC--CC--CCCcceEEEeCCCCCCCCCCc-e
Q 023191 200 VAG-ASA-YARLYDYERIRKVCNKQ------KAIMLADMAHISGLVAAGVI--PS--PFEYADVVTTTTHKSLRGPRG-A 266 (286)
Q Consensus 200 ~i~-~~n-~g~~~~l~~I~~ia~~~------~~~vivD~a~~~g~~~~~~~--~~--~~~~~D~v~~s~~K~l~gp~g-G 266 (286)
+++ .+| +|.+.|+++|+++|+++ ++++++|+||+.+..+.... +. ...++|++++|+|||+.||.| |
T Consensus 191 ~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G 270 (431)
T TIGR01788 191 VCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVG 270 (431)
T ss_pred EEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcE
Confidence 887 444 88999999999999999 99999999998665432211 11 123699999999999889999 9
Q ss_pred EEEEecc
Q 023191 267 MIFFRKG 273 (286)
Q Consensus 267 ~l~~~~~ 273 (286)
+++++++
T Consensus 271 ~l~~r~~ 277 (431)
T TIGR01788 271 WVIWRDE 277 (431)
T ss_pred EEEEeCh
Confidence 9999875
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=168.78 Aligned_cols=209 Identities=18% Similarity=0.141 Sum_probs=147.0
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
..++|..|++ ++++.+.+++.+.+.... ..|+...+..++++++.+++.+.+|...+. .+|++|+|
T Consensus 31 ~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~i~it~G 101 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGH-------NYYGPSEGLPELREAIVKREKRKNGVDITP--DDVRVTAA 101 (398)
T ss_pred CeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCC-------CCCCCCCCcHHHHHHHHHHHHHhcCCCCCh--hhEEEeCC
Confidence 5689998876 468889999988775421 124445677899999999988877753222 36999999
Q ss_pred hH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 122 ~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
++ ++.+++.+++++||.|+++++.|..+ ...+...|.....++ ..+.+++.+|++++++.+.+ ++++|+
T Consensus 102 ~~~al~~~~~~~~~~gd~Vl~~~p~y~~~--------~~~~~~~g~~~v~~~-~~~~~~~~~d~~~l~~~~~~-~~~~v~ 171 (398)
T PRK08363 102 VTEALQLIFGALLDPGDEILIPGPSYPPY--------TGLVKFYGGVPVEYR-TIEEEGWQPDIDDIRKKITE-KTKAIA 171 (398)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCCcch--------HHHHHHcCCEEEEec-cccccCCcCCHHHHHhhCCc-ceEEEE
Confidence 99 88878899999999999999555544 334445565444442 24435678999999999877 889999
Q ss_pred Ec-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CCCc--ceEEEeCCCCCCC--CCCceEEE
Q 023191 201 AG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFEY--ADVVTTTTHKSLR--GPRGAMIF 269 (286)
Q Consensus 201 i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~~--~D~v~~s~~K~l~--gp~gG~l~ 269 (286)
++ |+| +|...+ +++|.++|+++|+++|+|+++..-... +.... .+.. .-+++.|++|+|+ |.+-|+++
T Consensus 172 l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~ 250 (398)
T PRK08363 172 VINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYE-GKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIY 250 (398)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccC-CcccCHHHcCcCCcEEEEecchhccCCccceEEEEE
Confidence 87 766 776655 889999999999999999996532221 11111 1111 2366899999864 44459999
Q ss_pred E--ecchh
Q 023191 270 F--RKGVK 275 (286)
Q Consensus 270 ~--~~~~~ 275 (286)
+ ++++.
T Consensus 251 ~~~~~~~~ 258 (398)
T PRK08363 251 FVDPEGKL 258 (398)
T ss_pred EeCcHHHH
Confidence 8 44443
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=170.34 Aligned_cols=207 Identities=14% Similarity=0.038 Sum_probs=147.6
Q ss_pred HcCceecCCCC------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC
Q 023191 46 WKGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL 119 (286)
Q Consensus 46 ~~~i~L~~~e~------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~ 119 (286)
.+.++|..|++ ++|+.+++++.+++..... ..|+...+..++++++.+++.+.+|...+. .+|++|
T Consensus 31 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~i~~t 102 (409)
T PLN02656 31 KRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKF------NGYAPTVGLPQARRAIAEYLSRDLPYKLSL--DDVFIT 102 (409)
T ss_pred CeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHHhcCCCCCc--ccEEEe
Confidence 47799998877 3578999999887764221 124455677899999999998877753332 369999
Q ss_pred CChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
+|++ ++..++.++++|||+|++++|.|+ .+...+...|.+++.+++. ..+++.+|++++++++++ ++++
T Consensus 103 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~--------~~~~~~~~~g~~~~~i~~~-~~~~~~~d~~~l~~~~~~-~~~~ 172 (409)
T PLN02656 103 SGCTQAIDVALSMLARPGANILLPRPGFP--------IYELCAAFRHLEVRYVDLL-PEKGWEVDLDAVEALADQ-NTVA 172 (409)
T ss_pred CChHHHHHHHHHHHhCCCCeEEEeCCCCC--------cHHHHHHHcCCEEEEEeCC-CcCCCCCCHHHHHHHhcc-CceE
Confidence 9999 877788899999999999995553 3333445667666666642 124578999999998877 7888
Q ss_pred EEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC---C--cceEEEeCCCCCCC--CCCce
Q 023191 199 IVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---E--YADVVTTTTHKSLR--GPRGA 266 (286)
Q Consensus 199 v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~---~--~~D~v~~s~~K~l~--gp~gG 266 (286)
++++ |+| +|... ++++|+++|++|++++|+|+++. .....+....++ . ..-+++.|++|+|+ |.|-|
T Consensus 173 v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG 251 (409)
T PLN02656 173 LVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYG-HLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLG 251 (409)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhh-hcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEE
Confidence 8887 766 66553 58889999999999999999965 322222111111 1 12367899999864 44559
Q ss_pred EEEEe
Q 023191 267 MIFFR 271 (286)
Q Consensus 267 ~l~~~ 271 (286)
+++..
T Consensus 252 ~~i~~ 256 (409)
T PLN02656 252 WFVTT 256 (409)
T ss_pred EEEEe
Confidence 99984
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-20 Score=166.96 Aligned_cols=233 Identities=13% Similarity=0.077 Sum_probs=161.1
Q ss_pred cccccChHHHHHHHHHHHHHHcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHH
Q 023191 26 PLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (286)
+.+.+.+..+.............++|..+.+ ++++.+++++.+.+.+.. .+ |+...+..++++++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~-~~------Y~~~~g~~~lr~~ia~~l~~ 80 (387)
T PRK07683 8 RVKDIQISGIRQFSNMVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITENY-TS------YTHNAGLLELRKAACNFVKD 80 (387)
T ss_pred HHHhCCccHHHHHHHHHHhcCCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-CC------CCCCCCCHHHHHHHHHHHHH
Confidence 3444455555555554322345689988876 346788889888776422 12 34446678999999999987
Q ss_pred HCCC--CCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCC
Q 023191 104 AFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180 (286)
Q Consensus 104 ~~g~--~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 180 (286)
.+|+ +++. +|++|+|++ ++.+++.+++++||+|+++++.|. .+...+...|.+++.++ .+.+++
T Consensus 81 ~~g~~~~~~~---~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~--------~~~~~~~~~g~~~~~~~--~~~~~~ 147 (387)
T PRK07683 81 KYDLHYSPES---EIIVTIGASEAIDIAFRTILEPGTEVILPAPIYP--------GYEPIIRLCGAKPVFID--TRSTGF 147 (387)
T ss_pred HhCCCCCCCC---cEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcc--------chHHHHHHcCCEEEEee--cCcccC
Confidence 7776 4431 599999999 888788899999999999995444 33334456676655454 554567
Q ss_pred CCCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCC-CCC---CcceE
Q 023191 181 YIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPF---EYADV 251 (286)
Q Consensus 181 ~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~~---~~~D~ 251 (286)
.+|.+++++.+.+ ++++++++ ++| +|... ++++|+++|+++|+++|+|+++........... ..+ ....+
T Consensus 148 ~~~~~~l~~~~~~-~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi 226 (387)
T PRK07683 148 RLTAEALENAITE-KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTI 226 (387)
T ss_pred CCCHHHHHHhcCc-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeE
Confidence 8899999999877 89999887 666 67554 488899999999999999999764322211110 001 12357
Q ss_pred EEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 252 VTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 252 v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
++.|++|.|+ |.|-|+++++.++.+...
T Consensus 227 ~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~ 256 (387)
T PRK07683 227 VINGLSKSHSMTGWRIGFLFAPSYLAKHIL 256 (387)
T ss_pred EEeeccccccCccceeEEEEcCHHHHHHHH
Confidence 7999999885 444599999887665544
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=166.76 Aligned_cols=217 Identities=18% Similarity=0.168 Sum_probs=148.4
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcce-eEEeCCCh
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGV-NVQSLSGS 122 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~v~~~sG~ 122 (286)
.+.++|..+++. +++.+.+++.+.+.... ...|+...+..++++++++++.+.+|++.+. . +|++|+|+
T Consensus 33 ~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~--~~~I~it~G~ 104 (403)
T PRK08636 33 EDIIDFSMGNPDGPTPQHIIDKLCESAQKPK------THGYSVSKGIYKLRLAICNWYKRKYNVDLDP--ETEVVATMGS 104 (403)
T ss_pred CCEEEcCCcCCCCCCCHHHHHHHHHHhcCCc------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCeEEECCCh
Confidence 356888877653 46667777665443211 1224555778899999999999888864322 2 59999999
Q ss_pred H-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHH----HHHhhh--cC
Q 023191 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQL----EKSATL--FR 195 (286)
Q Consensus 123 ~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l----~~~i~~--~~ 195 (286)
+ ++..++.++++|||.|++++ |+|+.+...+...|.+++.++++.+ +++.+|++.+ +++++. .+
T Consensus 105 ~~al~~~~~~l~~~gd~Vlv~~--------P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~ 175 (403)
T PRK08636 105 KEGYVHLVQAITNPGDVAIVPD--------PAYPIHSQAFILAGGNVHKMPLEYN-EDFELDEDQFFENLEKALRESSPK 175 (403)
T ss_pred HHHHHHHHHHhCCCCCEEEEcC--------CCCcchHHHHHhcCCEEEEEecccc-ccCccChhhhhhHHHHHHhhccCC
Confidence 9 88879999999999999999 5555555456677877766664333 4578888754 555542 36
Q ss_pred CcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CCCc---ceEEEeCCCCCC--CCC
Q 023191 196 PKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFEY---ADVVTTTTHKSL--RGP 263 (286)
Q Consensus 196 tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~~---~D~v~~s~~K~l--~gp 263 (286)
+++++++ |+| +|...+ +++|+++|++|++++|+|+++..-.......+. .++. ..+.+.|++|.| .|.
T Consensus 176 ~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 255 (403)
T PRK08636 176 PKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGW 255 (403)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccc
Confidence 8888888 666 775554 678889999999999999996532221111111 1111 224578999988 455
Q ss_pred CceEEEEecchhhhhc
Q 023191 264 RGAMIFFRKGVKEINK 279 (286)
Q Consensus 264 ~gG~l~~~~~~~~~~~ 279 (286)
+.|+++.++++.+..+
T Consensus 256 RiG~iv~~~~li~~~~ 271 (403)
T PRK08636 256 RVGFVVGNKKLVGALK 271 (403)
T ss_pred eeeeeeCCHHHHHHHH
Confidence 6699999888765544
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-20 Score=162.65 Aligned_cols=206 Identities=17% Similarity=0.152 Sum_probs=161.4
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQV 128 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~ 128 (286)
+-|++|..+.++.|+++|.....+.+ +.....+-+.+.+.++..|+.+... +-++.++|+.++.++
T Consensus 7 ~Ll~PGP~~v~~~V~~am~~~~~~h~------------s~~F~~~~~~~~~~L~~v~~t~~~~--~~ll~gsGt~amEAa 72 (383)
T COG0075 7 LLLTPGPVPVPPRVLLAMARPMVGHR------------SPDFVGIMKEVLEKLRKVFGTENGD--VVLLSGSGTLAMEAA 72 (383)
T ss_pred eeeeCCCCCCCHHHHHHhcCCCCCCC------------CHHHHHHHHHHHHHHHHHhcCCCCc--EEEEcCCcHHHHHHH
Confidence 56788988999999999987664422 1334566677889999999987422 223445555599989
Q ss_pred HHHhcCCCCeEEeccCCCCcccCccccccc--cccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-CCcEEEEc--C
Q 023191 129 YTALLKPHDRIMALDLPHGGHLSHGYQTDT--KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-RPKLIVAG--A 203 (286)
Q Consensus 129 l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-~tk~v~i~--~ 203 (286)
+..+++|||+||+.. .+.+-.+ ..++..|.+++.+. .. .+-.+|++++++.++++ +.++|.+. .
T Consensus 73 v~sl~~pgdkVLv~~--------nG~FG~R~~~ia~~~g~~v~~~~--~~-wg~~v~p~~v~~~L~~~~~~~~V~~vH~E 141 (383)
T COG0075 73 VASLVEPGDKVLVVV--------NGKFGERFAEIAERYGAEVVVLE--VE-WGEAVDPEEVEEALDKDPDIKAVAVVHNE 141 (383)
T ss_pred HHhccCCCCeEEEEe--------CChHHHHHHHHHHHhCCceEEEe--CC-CCCCCCHHHHHHHHhcCCCccEEEEEecc
Confidence 999999999999988 4433222 34667777776664 33 45689999999999852 45666663 6
Q ss_pred CCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhccCC
Q 023191 204 SAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQGK 282 (286)
Q Consensus 204 ~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~~~ 282 (286)
+.+|...|+++|+++|++||.++|||+..++|..+.+...++ +|+++++++|+|.+|.| |++.++++..+..++.+
T Consensus 142 TSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wg---iDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~ 218 (383)
T COG0075 142 TSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWG---IDVAITGSQKALGAPPGLAFVAVSERALEAIEERK 218 (383)
T ss_pred CcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcC---ccEEEecCchhccCCCccceeEECHHHHHHHhcCC
Confidence 668888999999999999999999999999999998888888 99999999999999999 99999998777666443
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-20 Score=165.49 Aligned_cols=200 Identities=16% Similarity=0.154 Sum_probs=142.3
Q ss_pred ecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHH
Q 023191 51 LIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVY 129 (286)
Q Consensus 51 L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l 129 (286)
+.++...+++.+++++...... + .....++.+.+++.+++++|++++. ..|++++|++ ++..++
T Consensus 3 ~~p~p~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~la~~~~~~~~~--~~i~~~~~gt~~l~~~~ 67 (355)
T TIGR03301 3 LTPGPLSTSATVRDAMLVDWCH-W------------DSEFNDVTDQVRDRLLALAGGDDNH--TCVLLQGSGTFAVEATI 67 (355)
T ss_pred CcCCCCCCCHHHHHHhhhhccC-C------------CHHHHHHHHHHHHHHHHHhcCCCCC--cEEEEeCCcHHHHHHHH
Confidence 4566667899999999773322 1 0122366677889999999997643 2466665555 888788
Q ss_pred HHhcCCCCeEEeccCC-CCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-CCcEEEEc-CCC-
Q 023191 130 TALLKPHDRIMALDLP-HGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-RPKLIVAG-ASA- 205 (286)
Q Consensus 130 ~a~~~~Gd~Vl~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-~tk~v~i~-~~n- 205 (286)
.+++++||++++..+. |+.. +...+...|.+++.++ .+ +++.+|++++++.++++ ++++++++ ++|
T Consensus 68 ~~~~~~~~~vi~~~~~~~~~~-------~~~~a~~~g~~~~~i~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~ 137 (355)
T TIGR03301 68 GSLVPRDGKLLVLINGAYGER-------LAKICEYLGIPHTDLN--FS-EYEPPDLNRIEEALAADPDITHVATVHHETT 137 (355)
T ss_pred HhccCCCCeEEEECCCchhhH-------HHHHHHHcCCceEEEe--cC-CCCCCCHHHHHHHHHhCCCceEEEEEecCCc
Confidence 9999999987776532 2211 1112334566565555 33 45789999999999761 34556554 444
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
+|...|+++|.++|++|++++|+|++|+.|..+.++... ++|++++|+|||++||.| |++++++++.+..
T Consensus 138 ~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~ 208 (355)
T TIGR03301 138 TGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEEL---DVDALIASANKCLEGVPGFGFVIARRDLLEAS 208 (355)
T ss_pred ccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhc---CccEEEecCCcccccCCceeEEEECHHHHHHh
Confidence 678889999999999999999999999888655444333 389999999999988888 9999998865443
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=171.23 Aligned_cols=228 Identities=18% Similarity=0.177 Sum_probs=155.2
Q ss_pred hccccccccChHHHHHHHHHHH--HHHcCceecCCCC------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHH
Q 023191 22 QLNAPLEVVDPEIADIIEHEKA--RQWKGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 93 (286)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~L~~~e~------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 93 (286)
.++.+...+.......+.+... ...+.++|..|++ ++++.+.+++.+.+.... ...|+...+..+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~------~~~Y~~~~G~~~L 80 (412)
T PTZ00433 7 SMSKHAGRVFNPLRTVTDNAKPSPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQE------CNGYPPTVGSPEA 80 (412)
T ss_pred cccHHHHhhhccHHHHHHhhccCCCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCC------CCCCCCCCCcHHH
Confidence 3334444444444444444332 2246789987775 368899999887765311 1224555677899
Q ss_pred HHHHHHHHHHHCC--------CCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccc
Q 023191 94 ESLCQKRALEAFR--------LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 164 (286)
Q Consensus 94 ~~~~~~~~~~~~g--------~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
++++.+++.+.++ ++++ +|++|+|++ ++..++.+++++||+|++++|.| ..+...+...
T Consensus 81 r~aia~~~~~~~~~~~~~~~~~~~~----~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y--------~~~~~~~~~~ 148 (412)
T PTZ00433 81 REAVATYWRNSFVHKESLKSTIKKD----NVVLCSGVSHAILMALTALCDEGDNILVPAPGF--------PHYETVCKAY 148 (412)
T ss_pred HHHHHHHHHhhccccccccCCCChh----hEEEeCChHHHHHHHHHHhcCCCCEEEEccCCc--------ccHHHHHHHc
Confidence 9999998887654 4453 599999999 88879999999999999999544 4444345567
Q ss_pred eeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEecccccccccc
Q 023191 165 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAA 239 (286)
Q Consensus 165 g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~ 239 (286)
|..+..++++.+ +++.+|++++++.+.+ ++++|+++ |+| +|... ++++|+++|++||++||+|+++. .....
T Consensus 149 g~~~~~i~~~~~-~~~~~d~~~l~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~ 225 (412)
T PTZ00433 149 GIEMRFYNCRPE-KDWEADLDEIRRLVDD-RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYA-GMVFN 225 (412)
T ss_pred CCEEEEEecCcc-ccCcCCHHHHHHHhcc-CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEecccc-ccccC
Confidence 766666664311 4578999999998887 89999997 666 67544 47788999999999999999964 33221
Q ss_pred CC-CCC--CCC--cceEEEeCCCCCC--CCCCceEEEE
Q 023191 240 GV-IPS--PFE--YADVVTTTTHKSL--RGPRGAMIFF 270 (286)
Q Consensus 240 ~~-~~~--~~~--~~D~v~~s~~K~l--~gp~gG~l~~ 270 (286)
+. ... .+. ..-+++.|++|.| .|.|-|++++
T Consensus 226 ~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~ 263 (412)
T PTZ00433 226 GATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLL 263 (412)
T ss_pred CCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEE
Confidence 11 111 111 1236789999987 4445599997
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=165.74 Aligned_cols=237 Identities=14% Similarity=0.087 Sum_probs=161.2
Q ss_pred cccccccChHHHHHHHHHHHH----HHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKAR----QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLC 97 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~----~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (286)
++++....+..+..+....+. ..+.++|..+++. +++.+.+++.+.+.+.. . .|+...+...+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~------~Y~~~~g~~~lr~~i 77 (393)
T PRK05764 5 SKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGK-T------KYTPAAGIPELREAI 77 (393)
T ss_pred hhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCC-C------CcCCCCChHHHHHHH
Confidence 455555556555444443322 2456888888774 46888888887775421 1 144456778999999
Q ss_pred HHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 98 QKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 98 ~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
++++.+.+|...+. .+|++|+|++ ++..++.+++++||.|+++++.|..+ ...+...|.+++.++.+.
T Consensus 78 a~~~~~~~~~~~~~--~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~--------~~~~~~~g~~~~~~~~~~- 146 (393)
T PRK05764 78 AAKLKRDNGLDYDP--SQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSY--------PEMVKLAGGVPVFVPTGE- 146 (393)
T ss_pred HHHHHHHhCCCCCH--HHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcch--------HHHHHHcCCEEEEEecCc-
Confidence 99998887653222 3599999998 87778889999999999999555443 334456676666665431
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCC----CCC--C
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPS--P 245 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~----~~~--~ 245 (286)
.+++.+|++++++.+++ ++++|+++ |+| +|... ++++|+++|++|++++++|+++......... ... .
T Consensus 147 ~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 225 (393)
T PRK05764 147 ENGFKLTVEQLEAAITP-KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPE 225 (393)
T ss_pred ccCCcCCHHHHHHhhCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCC
Confidence 24578999999999876 88998887 666 66554 4789999999999999999997532221110 000 1
Q ss_pred CCcceEEEeCCCCCCCCC--CceEEEEecchhhhhc
Q 023191 246 FEYADVVTTTTHKSLRGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 246 ~~~~D~v~~s~~K~l~gp--~gG~l~~~~~~~~~~~ 279 (286)
....++++.|++|+++.| +.|+++.+.++.+..+
T Consensus 226 ~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~ 261 (393)
T PRK05764 226 LRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMS 261 (393)
T ss_pred CcCCEEEEecCcccccCccceeEEEecCHHHHHHHH
Confidence 113578899999987434 3499998877665443
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=168.06 Aligned_cols=215 Identities=13% Similarity=0.007 Sum_probs=149.5
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|..+.+. +++.+.+++.+.+.... ..|+...+..++++++.+++++.+|.+.+. .+|++|+|++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--~~i~~t~G~~ 103 (402)
T PRK06107 33 RSIVDLTVGEPDFDTPDHIKQAAVAAIERGE-------TKYTLVNGTPALRKAIIAKLERRNGLHYAD--NEITVGGGAK 103 (402)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHHHHHcCC-------CCCCCCCCCHHHHHHHHHHHHHhcCCCCCh--hhEEEeCCHH
Confidence 356899888774 46888888888775321 124555778899999999999998884332 3699999998
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++..++.+++++||.|++++|.|..+. ..+...+.....++++.+ +++.+|++++++.+.+ ++++|+++
T Consensus 104 ~al~~~~~~~~~~gd~vl~~~p~y~~y~--------~~~~~~~~~~~~v~~~~~-~~~~~~~~~l~~~~~~-~~~~v~l~ 173 (402)
T PRK06107 104 QAIFLALMATLEAGDEVIIPAPYWVSYP--------DMVLANDGTPVIVACPEE-QGFKLTPEALEAAITP-RTRWLILN 173 (402)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcCHH--------HHHHHcCCEEEEecCCcc-cCCCCCHHHHHhhcCc-CceEEEEE
Confidence 777788889999999999996555442 223344444444443212 4568999999999876 88888887
Q ss_pred -CCC-CCCccC---HHHHHHHHHhc-CCEEEEeccccccccccCCCCCC------CCcceEEEeCCCCCCC--CCCceEE
Q 023191 203 -ASA-YARLYD---YERIRKVCNKQ-KAIMLADMAHISGLVAAGVIPSP------FEYADVVTTTTHKSLR--GPRGAMI 268 (286)
Q Consensus 203 -~~n-~g~~~~---l~~I~~ia~~~-~~~vivD~a~~~g~~~~~~~~~~------~~~~D~v~~s~~K~l~--gp~gG~l 268 (286)
|+| +|...+ +++|+++|++| ++++|+|++++.-.......+.. +...-++++|++|.|+ |.+-|++
T Consensus 174 ~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~ 253 (402)
T PRK06107 174 APSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYA 253 (402)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeee
Confidence 777 776655 56778889998 99999999965211111111110 0113467899999884 3444999
Q ss_pred EEecchhhhhc
Q 023191 269 FFRKGVKEINK 279 (286)
Q Consensus 269 ~~~~~~~~~~~ 279 (286)
++++++.+..+
T Consensus 254 ~~~~~~~~~~~ 264 (402)
T PRK06107 254 AGPADLIAAIN 264 (402)
T ss_pred ecCHHHHHHHH
Confidence 99888776555
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-20 Score=171.20 Aligned_cols=200 Identities=14% Similarity=0.149 Sum_probs=143.7
Q ss_pred CCCHHHHHHhccccc-cCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHH---HHH-H
Q 023191 57 FTSVSVMQAVGSVMT-NKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ---VYT-A 131 (286)
Q Consensus 57 ~~~~~v~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~---~l~-a 131 (286)
.+++.+.+++.+... ..| +.|... ...++..+++.++++++++++|++. +.+..++|+++.+. +++ .
T Consensus 81 ~~~p~i~~~~~~~~~~~~~-tpYq~e---~~sqG~lel~~~~~~~la~l~G~~~----~~l~~~~GA~a~~~~l~~~r~~ 152 (481)
T PRK04366 81 KYNPKINEKVARLPGFAEL-HPLQPE---ETVQGALELMYELQEWLKEITGMDA----VTLQPAAGAHGELTGLLMIRAY 152 (481)
T ss_pred CCCHHHHHHHHhCcchhcC-CCCCCh---hhhhHHHHHHHHHHHHHHHHhCCCc----eEEEeCcHHHHHHHHHHHHHHH
Confidence 578999998876421 112 112110 2456778899999999999999974 35777778773322 233 3
Q ss_pred hcCCCC----eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-C
Q 023191 132 LLKPHD----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-Y 206 (286)
Q Consensus 132 ~~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~ 206 (286)
++++|| +|+++++.|+++.. .+...|.+++.+++ + +++.+|++++++++++ +|++|+++.+| +
T Consensus 153 ~~~~Gd~~~~~Vlv~~~~hp~~~~--------~~~~~G~~vv~v~~--~-~~~~~D~e~L~~~i~~-~t~~V~v~~Pn~t 220 (481)
T PRK04366 153 HEARGDTKRTEVIVPDSAHGTNPA--------SAAMAGFKVVEIPS--N-EDGLVDLEALKAAVGE-DTAALMLTNPNTL 220 (481)
T ss_pred hhccCcCCCCEEEEcCCccHhHHH--------HHHHcCCEEEEeec--C-CCCCcCHHHHHhhccc-CCeEEEEeCCCCc
Confidence 367777 99999977777654 33467776766664 4 4688999999999987 89999998555 6
Q ss_pred CCc-cCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCC-----c-eEEEEecchhhhh
Q 023191 207 ARL-YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPR-----G-AMIFFRKGVKEIN 278 (286)
Q Consensus 207 g~~-~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~-----g-G~l~~~~~~~~~~ 278 (286)
|.. .++++|+++|+++|+++++|+||..+.... ..+ .-.|+|++++++||||++|. + |++++++++.+.+
T Consensus 221 G~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~-~~~-~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~l 297 (481)
T PRK04366 221 GLFERNILEIAEIVHEAGGLLYYDGANLNAILGK-ARP-GDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFL 297 (481)
T ss_pred cccchHHHHHHHHHHHcCCEEEEEecChhhhccc-CCc-cccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhC
Confidence 765 589999999999999999999998664431 111 11269999999999997553 3 6899998777654
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=164.52 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=144.6
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC--CCCcceeEEeCCCh
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~~~~~v~~~sG~ 122 (286)
+.++|..+++. +++.+.+++.+.+.+.. ...|+...+..++++++++++.+.+|.+ ++. +|++|+|+
T Consensus 31 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~---~I~it~G~ 101 (405)
T PRK09148 31 DIIDLGMGNPDLPTPQHIVDKLCETAQDPR------THRYSASKGIPGLRRAQAAYYARRFGVKLNPDT---QVVATLGS 101 (405)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHcCcc------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---cEEEcCCh
Confidence 56899888773 56888888877654311 1124555677899999999998877763 431 59999999
Q ss_pred H-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 123 ~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
+ ++..++.+++++||.|++++|.|.. +...+...|.++..++++.+ ..+..+++++.+...+ ++++|++
T Consensus 102 ~~al~~~~~~l~~~gd~Vl~~~P~y~~--------~~~~~~~~g~~v~~v~~~~~-~~~~~~l~~~~~~~~~-~~~~v~l 171 (405)
T PRK09148 102 KEGFANMAQAITAPGDVILCPNPSYPI--------HAFGFIMAGGVIRSVPAEPD-EEFFPALERAVRHSIP-KPIALIV 171 (405)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCcc--------cHHHHHhcCCEEEEEeCCCC-CCCccCHHHHHhhccc-cceEEEE
Confidence 9 8887999999999999999955444 43344566766666654322 2344455554443334 7889988
Q ss_pred c-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC--CC---cceEEEeCCCCCCC--CCCceEEE
Q 023191 202 G-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP--FE---YADVVTTTTHKSLR--GPRGAMIF 269 (286)
Q Consensus 202 ~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~--~~---~~D~v~~s~~K~l~--gp~gG~l~ 269 (286)
+ |+| +|...+ +++|.++|++|+++||+|+++..-.......+.. +. ...+++.|++|.|+ |.+.|+++
T Consensus 172 ~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v 251 (405)
T PRK09148 172 NYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAV 251 (405)
T ss_pred eCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeee
Confidence 8 677 776666 4688899999999999999965322211111111 11 13356899999874 45569999
Q ss_pred Eecchhhhhc
Q 023191 270 FRKGVKEINK 279 (286)
Q Consensus 270 ~~~~~~~~~~ 279 (286)
.+.++.+..+
T Consensus 252 ~~~~~i~~l~ 261 (405)
T PRK09148 252 GNERLIAALT 261 (405)
T ss_pred CCHHHHHHHH
Confidence 9887766554
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=169.05 Aligned_cols=213 Identities=15% Similarity=0.121 Sum_probs=152.0
Q ss_pred CceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 48 GLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
.++|+.++++ +|+.+++++.+.+..... ....|+. .+...|++++.+++.+.+|.+.+. .+|++|+|++ +
T Consensus 28 ~i~l~~~~~~~~~~~~~~~al~~~l~~~~~----~~~~Y~~-~g~~~lr~aia~~~~~~~~~~~~~--~~I~it~G~~~~ 100 (368)
T PRK03317 28 PVRLNTNENPYPPSPALVADIAEAVAEAAA----GLNRYPD-RDAVALRADLAAYLTAQTGVGLTV--ENVWAANGSNEI 100 (368)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHhhhhh----hhccCCC-CchHHHHHHHHHHhhhhccCCCCh--hhEEECCCHHHH
Confidence 5889988874 688899999887643110 0112332 356789989999998887753322 3699999999 8
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-C
Q 023191 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (286)
Q Consensus 125 ~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~ 203 (286)
+..+++++++|||.|+++. |.|..+...+...|.++ ++++.+ +++.+|++++++++.++++|+|+++ |
T Consensus 101 l~~~~~~~~~~gd~v~v~~--------P~y~~~~~~~~~~g~~~--~~~~~~-~~~~~d~~~l~~~~~~~~~~~i~l~~p 169 (368)
T PRK03317 101 LQQLLQAFGGPGRTALGFV--------PSYSMHPIIARGTHTEW--VEGPRA-ADFTLDVDAAVAAIAEHRPDVVFLTSP 169 (368)
T ss_pred HHHHHHHhcCCCCEEEEeC--------CChHHHHHHHHhcCCee--EEcccC-CCCCCCHHHHHHHHhccCCCEEEEeCC
Confidence 8879999999999999999 55554444445556444 444444 4678999999999875578999887 6
Q ss_pred CC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-----cceEEEeCCCCCCC--CCCceEEEEecchh
Q 023191 204 SA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-----YADVVTTTTHKSLR--GPRGAMIFFRKGVK 275 (286)
Q Consensus 204 ~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-----~~D~v~~s~~K~l~--gp~gG~l~~~~~~~ 275 (286)
+| +|...+.+++.++++.+++++|+|++|.. ....+. ...+. ...+++.|++|.|+ |.+-|++++++++.
T Consensus 170 ~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~-~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~ 247 (368)
T PRK03317 170 NNPTGTALPLDDVEAILDAAPGIVVVDEAYAE-FRRSGT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVV 247 (368)
T ss_pred CCCCCCCCCHHHHHHHHHHCCceEEEeCCchh-hcccCC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHH
Confidence 66 78899999999999999999999999763 211111 11111 12367889999885 44559999988877
Q ss_pred hhhcc
Q 023191 276 EINKQ 280 (286)
Q Consensus 276 ~~~~~ 280 (286)
+..++
T Consensus 248 ~~l~~ 252 (368)
T PRK03317 248 DALRL 252 (368)
T ss_pred HHHHh
Confidence 66653
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-20 Score=172.05 Aligned_cols=220 Identities=12% Similarity=0.095 Sum_probs=146.9
Q ss_pred cCceecCCCCCC-CHHHHHHhcccc----ccC-CCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC----CCCCCcceeE
Q 023191 47 KGLELIPSENFT-SVSVMQAVGSVM----TNK-YSEGYPGARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNV 116 (286)
Q Consensus 47 ~~i~L~~~e~~~-~~~v~~a~~~~l----~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~~~~~v 116 (286)
+.|+|...||+. .+.+.+.+.+.. ... ....++....|+...+..++++++.+++.+.+| ++++ +|
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe----~I 122 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE----RV 122 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh----hE
Confidence 469999999975 233333333321 111 111244445577778899999999999999877 5664 59
Q ss_pred EeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccc-cceeeeEEEecccCCCCCCCCHHHHHHHhh--
Q 023191 117 QSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS-AVSIFFETMPYRLNESTGYIDYDQLEKSAT-- 192 (286)
Q Consensus 117 ~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~-- 192 (286)
++|+|++ ++..++.++++|||.|++++|.|+++ ...+. ..|.+++.+++..+ +++.+|++.+++++.
T Consensus 123 vit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~--------~~~~~~~~G~~vv~v~~~~~-~~~~~~~~~le~a~~~a 193 (496)
T PLN02376 123 VMSGGATGANETIMFCLADPGDVFLIPSPYYAAF--------DRDLRWRTGVEIIPVPCSSS-DNFKLTVDAADWAYKKA 193 (496)
T ss_pred EEccchHHHHHHHHHHhCCCCCEEEECCCCccch--------HHHHHhhCCCEEEEEeCCCC-ccCcCCHHHHHHHHHHH
Confidence 9999999 88889999999999999999555444 33333 35665655554322 457899999986542
Q ss_pred ---hcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC--C----C--c--ce--EE
Q 023191 193 ---LFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP--F----E--Y--AD--VV 252 (286)
Q Consensus 193 ---~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~--~----~--~--~D--~v 252 (286)
..++|+|+++ |+| +|...+ +++|+++|++|+++||+|++++.-.......... + + . .+ ++
T Consensus 194 ~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~v 273 (496)
T PLN02376 194 QESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHI 273 (496)
T ss_pred HhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEE
Confidence 1368988887 777 776665 6678889999999999999976432221111100 0 0 0 12 45
Q ss_pred EeCCCCCC--CCCCceEEEEe-cchhhhhc
Q 023191 253 TTTTHKSL--RGPRGAMIFFR-KGVKEINK 279 (286)
Q Consensus 253 ~~s~~K~l--~gp~gG~l~~~-~~~~~~~~ 279 (286)
+.|++|.| .|.+-|+++.. +.+....+
T Consensus 274 v~S~SK~~glpGlRvG~li~~~~~l~~~~~ 303 (496)
T PLN02376 274 VYSLSKDMGLPGFRVGIVYSFNDSVVSCAR 303 (496)
T ss_pred EEeccccCCCCcceEEEEEECCHHHHHHHH
Confidence 78999987 45566999995 44555443
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=166.65 Aligned_cols=204 Identities=14% Similarity=0.095 Sum_probs=141.2
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.++|..|++ .+|+.+.+++.+.+.+.. ...|+...+..+|++++.+++.+.+|++.+. .+|++|+|
T Consensus 33 ~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~------~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~--~~I~it~G 104 (433)
T PRK06855 33 KITWENIGDPIAKGEKIPDWMKEIVAELVMDDK------SYGYCPTKGVLETREFLAELNNKRGGAQITP--DDIIFFNG 104 (433)
T ss_pred cccccccCCCcccCCCCCHHHHHHHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHHhccCCCCCH--hHEEEcCc
Confidence 5688877776 568888888887664311 1224556788899999999999887764332 36999999
Q ss_pred hH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccc-cccceeeeEEEecccCC-CCCCCCHHHHHHHhhh-cCCc
Q 023191 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK-ISAVSIFFETMPYRLNE-STGYIDYDQLEKSATL-FRPK 197 (286)
Q Consensus 122 ~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~-~~tk 197 (286)
++ ++..++ .+++|||.|++++|.|+.+ ... ....|..++.++ ++. +++.+|+++|++.+.. .+++
T Consensus 105 ~~~al~~~~-~l~~~Gd~Vlv~~P~Y~~~--------~~~~~~~~g~~~v~v~--~~~~~~~~~d~~~l~~~~~~~~~~~ 173 (433)
T PRK06855 105 LGDAIAKIY-GLLRREARVIGPSPAYSTH--------SSAEAAHAGYPPVTYR--LDPENNWYPDLDDLENKVKYNPSIA 173 (433)
T ss_pred HHHHHHHHH-HhcCCCCeEEEeCCCCchH--------HHHHHHhcCCeEEEEe--cccccCCCCCHHHHHHHHhcCCCce
Confidence 99 776565 4889999999999655443 211 112344444444 442 4578999999999864 2678
Q ss_pred EEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC----C-cceEEEeCCCCCC--CCCCc
Q 023191 198 LIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF----E-YADVVTTTTHKSL--RGPRG 265 (286)
Q Consensus 198 ~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~----~-~~D~v~~s~~K~l--~gp~g 265 (286)
+++++ |+| +|...+ +++|+++|++||++||+|+++.. ....+....++ . ..-+++.|++|+| .|.|.
T Consensus 174 ~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~-l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRi 252 (433)
T PRK06855 174 GILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNN-IVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRC 252 (433)
T ss_pred EEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccc-cccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceE
Confidence 88887 777 776555 66888889999999999999642 22222111111 1 1237799999987 56677
Q ss_pred eEEEE
Q 023191 266 AMIFF 270 (286)
Q Consensus 266 G~l~~ 270 (286)
|++.+
T Consensus 253 G~ii~ 257 (433)
T PRK06855 253 GWIEV 257 (433)
T ss_pred EEEEE
Confidence 99997
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=164.68 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=137.2
Q ss_pred CCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-c
Q 023191 55 ENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-L 133 (286)
Q Consensus 55 e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~ 133 (286)
.+..+++.++++.+.+.+.+. + ..+...++| +.+++++|.+. .+.+++|+.++.+++.++ +
T Consensus 9 ~p~~~~~e~~~~~~~l~~~~~--~-------~g~~~~~le----~~la~~~g~~~-----~v~~~sgt~al~lal~al~~ 70 (379)
T PRK11658 9 RPAMGDEELAAVKEVLRSGWI--T-------TGPKNQALE----QAFCQLTGNQH-----AIAVSSATAGMHITLMALGI 70 (379)
T ss_pred CCCCCHHHHHHHHHHHHcCCc--c-------CCHhHHHHH----HHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCC
Confidence 344567778888887765321 1 113455566 77788888864 255555544887788898 8
Q ss_pred CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHH
Q 023191 134 KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYE 213 (286)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~ 213 (286)
++||+|+++++.|.++.. .+...|.+++.++ ++.+++.+|++++++++++ +||+|+... .+|...+++
T Consensus 71 ~~Gd~Viv~~~~~~~~~~--------~~~~~G~~~v~vd--~~~~~~~~d~~~l~~~i~~-~tkav~~~~-~~G~~~d~~ 138 (379)
T PRK11658 71 GPGDEVITPSLTWVSTLN--------MIVLLGATPVMVD--VDRDTLMVTPEAIEAAITP-RTKAIIPVH-YAGAPADLD 138 (379)
T ss_pred CCCCEEEECCCcHHHHHH--------HHHHcCCEEEEEe--cCCCcCCcCHHHHHHhccc-CCeEEEEeC-CCCCcCCHH
Confidence 999999999977666533 3345676665554 5545678999999999987 899887432 267888999
Q ss_pred HHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEec-chh
Q 023191 214 RIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK-GVK 275 (286)
Q Consensus 214 ~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~-~~~ 275 (286)
+|.++|+++|+++|+|++|+.|....+.....+ +.+++.++.+|++.++.||++++++ ++.
T Consensus 139 ~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~ 200 (379)
T PRK11658 139 AIRAIGERYGIPVIEDAAHAVGTYYKGRHIGAR-GTAIFSFHAIKNITCAEGGLVVTDDDELA 200 (379)
T ss_pred HHHHHHHHcCCeEEEECCCccCCeECCeecCCC-CCEEEeCCCCCcCcccCceEEEECCHHHH
Confidence 999999999999999999999877654322221 3577788888999998999988864 443
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=163.84 Aligned_cols=186 Identities=20% Similarity=0.210 Sum_probs=134.9
Q ss_pred CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-cCC
Q 023191 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKP 135 (286)
Q Consensus 57 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~~~ 135 (286)
..+++.++++.+.+.+.+ + .......++| +.+++++|.+. .+.+++|+.++.+++.++ ++|
T Consensus 7 ~~~~~~~~~v~~~~~~~~---~------~~g~~~~~le----~~la~~~g~~~-----~v~~~sgt~al~~~l~al~~~~ 68 (380)
T TIGR03588 7 SIDQDDIDAVVEVLKSDF---L------TQGPTVPAFE----EALAEYVGAKY-----AVAFNSATSALHIACLALGVGP 68 (380)
T ss_pred CCCHHHHHHHHHHHhcCC---c------cCChhHHHHH----HHHHHHHCCCe-----EEEEcCHHHHHHHHHHHcCCCC
Confidence 346666788877775522 1 1113344555 77778888764 477776666887788888 899
Q ss_pred CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhh----hcCCcEEEEcCCCCCCccC
Q 023191 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT----LFRPKLIVAGASAYARLYD 211 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~----~~~tk~v~i~~~n~g~~~~ 211 (286)
||+|+++++.|.++.. .+...|.+++.++ ++++++.+|++++++.++ + +|++|++.. .+|...+
T Consensus 69 Gd~Viv~~~~~~~~~~--------~~~~~G~~~~~~~--~~~~~~~~d~~~l~~~i~~~~~~-~t~~v~~~~-~~G~~~~ 136 (380)
T TIGR03588 69 GDRVWTTPITFVATAN--------CALYCGAKVDFVD--IDPDTGNIDEDALEKKLAAAKGK-LPKAIVPVD-FAGKSVD 136 (380)
T ss_pred CCEEEeCCcchHHHHH--------HHHHcCCEEEEEe--cCCCcCCcCHHHHHHHhhcccCC-CceEEEEeC-CCCccCC
Confidence 9999999966655432 3345676665554 554567899999999998 5 889888642 2678889
Q ss_pred HHHHHHHHHhcCCEEEEeccccccccccCCCCCC-CCcceEEEeCCC--CCCCCCCceEEEEecc
Q 023191 212 YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-FEYADVVTTTTH--KSLRGPRGAMIFFRKG 273 (286)
Q Consensus 212 l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~-~~~~D~v~~s~~--K~l~gp~gG~l~~~~~ 273 (286)
+++|.++|++||++||+|++|+.|....+ .+.+ ..+.|++++|+| |+++.+.||+++++++
T Consensus 137 ~~~i~~l~~~~~~~lI~D~a~a~g~~~~~-~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~ 200 (380)
T TIGR03588 137 MQAIAALAKKHGLKIIEDASHALGAEYGG-KPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDE 200 (380)
T ss_pred HHHHHHHHHHcCCEEEEECCCcccCccCC-EeCCCccccceEEEecCCCCcccccCceEEEECCH
Confidence 99999999999999999999999876322 2222 113699999988 8998888999888764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-20 Score=180.76 Aligned_cols=219 Identities=16% Similarity=0.131 Sum_probs=148.5
Q ss_pred CceecCC-CCCCCH-HHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 48 GLELIPS-ENFTSV-SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~~-e~~~~~-~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
.+-|+.. -.++++ .+.+++.+++.+.+ ++++.. +.......++.+.+|+.+++++|+++++ .+|++|+|+| +
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~--~np~s~-~~~s~~~~~~~e~aR~~ia~~lga~~~~--~~VvFtsnaT~a 109 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVY--GNPHSQ-SDSSMRSSDTIESARQQVLEYFNAPPSD--YACVFTSGATAA 109 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhcc--CCCCcC-cchhhhHHHHHHHHHHHHHHHhCCCccc--eEEEEeCChHHH
Confidence 4566544 334454 55555555554422 233321 2222344566678999999999997643 2589999999 6
Q ss_pred HHHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-----CCCCCCH--HHHHHHhh----
Q 023191 125 NFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-----STGYIDY--DQLEKSAT---- 192 (286)
Q Consensus 125 ~~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-----~~~~~d~--e~l~~~i~---- 192 (286)
+..++.++ +++||+|+++..+|.+... ++.. +...|.+++.++++.+. +.+.+++ +++++.++
T Consensus 110 lnlva~~l~~~~gd~Iv~t~~eH~svl~-~~~~----a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~ 184 (805)
T PLN02724 110 LKLVGETFPWSSESHFCYTLENHNSVLG-IREY----ALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQ 184 (805)
T ss_pred HHHHHHHCCCCCCCeEEEeeccccchHH-HHHH----HHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhc
Confidence 66577777 7899999999999988774 3211 12235556666543111 1233443 66766532
Q ss_pred -----hcCCcEEEEc-CCC-CCCccCHHHHHHHHHhc--------CCEEEEeccccccccccCCCCCCCCcceEEEeCCC
Q 023191 193 -----LFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ--------KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH 257 (286)
Q Consensus 193 -----~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~--------~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~ 257 (286)
..+|++|.++ .+| +|.+.|++.|.++++.. ++++++|+||++|..+.++.... +|++++|+|
T Consensus 185 ~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~---~Dfl~~S~H 261 (805)
T PLN02724 185 KREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYP---ADFVVVSFY 261 (805)
T ss_pred cccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcC---CCEEEEecc
Confidence 1257899887 667 88999999775555532 35899999999999998887766 999999999
Q ss_pred CCCCCCCc-eEEEEecchhhhhc
Q 023191 258 KSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 258 K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
||++||.| |+|++++++.+.++
T Consensus 262 K~~GgP~G~G~L~vr~~~~~~l~ 284 (805)
T PLN02724 262 KIFGYPTGLGALLVRRDAAKLLK 284 (805)
T ss_pred eeccCCCCceEEEEehhhhhhhc
Confidence 99988999 99999988655433
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=165.85 Aligned_cols=208 Identities=17% Similarity=0.142 Sum_probs=147.1
Q ss_pred cCceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
+.++|..++. .+++.+.+++.+.+.. +..+++..+ ...+..++++++++++++++|.+. +|++++|++
T Consensus 43 ~~i~l~~~~~~~~~~~~~i~~a~~~~~~~-~~~~~~~~~---~~~G~~~l~~~l~~~la~~~g~~~-----~i~~tsG~~ 113 (397)
T PRK06939 43 EVINFCANNYLGLANHPELIAAAKAALDS-HGFGMASVR---FICGTQDLHKELEEKLAKFLGTED-----AILYSSCFD 113 (397)
T ss_pred eEEEeeccCccccCCCHHHHHHHHHHHHH-cCCCCcccc---cccCCcHHHHHHHHHHHHHhCCCc-----EEEEcChHH
Confidence 4588877653 2688899999887755 211232211 123445777888899999999752 599999976
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh---c--CCcE
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---F--RPKL 198 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~--~tk~ 198 (286)
++..+++++++|||+|+++++.|+++.. .+...+.++..+ + ..|++++++.+++ . ++++
T Consensus 114 a~~~~~~~l~~~gd~vi~~~~~~~~~~~--------~~~~~~~~~~~~--~------~~d~~~l~~~i~~~~~~~~~~~~ 177 (397)
T PRK06939 114 ANGGLFETLLGKEDAIISDALNHASIID--------GVRLCKAKRYRY--A------NNDMADLEAQLKEAKEAGARHKL 177 (397)
T ss_pred HHHHHHHHhCCCCCEEEEEhhhhHHHHH--------HHHhcCCceEEe--C------CCCHHHHHHHHHhhhccCCCCeE
Confidence 7777889999999999999976665532 334455443322 2 1488899888764 2 5677
Q ss_pred EEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCC----CCCCC-CcceEEEeCCCCCCCCCCceEEEEe
Q 023191 199 IVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPF-EYADVVTTTTHKSLRGPRGAMIFFR 271 (286)
Q Consensus 199 v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~----~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (286)
|+++ ..| +|...++++|.++|++|++++|+|++|..|...... ....+ ..+|++++|+||+|+|+++|+++++
T Consensus 178 v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~ 257 (397)
T PRK06939 178 IATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGR 257 (397)
T ss_pred EEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeC
Confidence 7765 333 677889999999999999999999998766443210 00111 2478999999999988889999999
Q ss_pred cchhhhhc
Q 023191 272 KGVKEINK 279 (286)
Q Consensus 272 ~~~~~~~~ 279 (286)
+++.+..+
T Consensus 258 ~~~~~~l~ 265 (397)
T PRK06939 258 KEVIDWLR 265 (397)
T ss_pred HHHHHHHH
Confidence 88776655
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-20 Score=166.13 Aligned_cols=184 Identities=21% Similarity=0.226 Sum_probs=132.3
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-cCCCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHD 137 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~~~Gd 137 (286)
.++.++++.+.+.+.+.. .......++| +.+++++|... .+.++||++|+.+++.++ +++||
T Consensus 4 ~~e~~~~v~~~l~s~~~~--------~~g~~~~~fE----~~~a~~~g~~~-----~~~~~sgt~Al~~al~~l~~~~gd 66 (363)
T PF01041_consen 4 TEEEIDAVLEVLRSGWLS--------TYGPYVEEFE----KEFAEYFGVKY-----AVAVSSGTSALHLALRALGLGPGD 66 (363)
T ss_dssp HHHHHHHHHHHHHHTCCS--------SSSHHHHHHH----HHHHHHHTSSE-----EEEESSHHHHHHHHHHHTTGGTTS
T ss_pred CHHHHHHHHHHHHhCCcc--------CCCHHHHHHH----HHHHHHhCCCe-----EEEeCChhHHHHHHHHhcCCCcCc
Confidence 355667777777664311 1125566777 77788888775 477888888888899998 89999
Q ss_pred eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHH
Q 023191 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRK 217 (286)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ 217 (286)
+|+++...+.+...+ +...|.++ +.++++++++.+|++.+++++++ +||+|++. +-.|...++++|.+
T Consensus 67 eVi~p~~t~~~~~~a--------i~~~G~~p--v~~Di~~~~~~id~~~~~~~i~~-~t~ai~~~-h~~G~~~d~~~i~~ 134 (363)
T PF01041_consen 67 EVIVPAYTFPATASA--------ILWAGAEP--VFVDIDPETLNIDPEALEKAITP-KTKAILVV-HLFGNPADMDAIRA 134 (363)
T ss_dssp EEEEESSS-THHHHH--------HHHTT-EE--EEE-BETTTSSB-HHHHHHHHHT-TEEEEEEE--GGGB---HHHHHH
T ss_pred eEecCCCcchHHHHH--------HHHhccEE--EEEeccCCcCCcCHHHHHHHhcc-CccEEEEe-cCCCCcccHHHHHH
Confidence 999999777766553 34667544 55578878999999999999998 99998863 34677779999999
Q ss_pred HHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCC--CCCCCCCceEEEEecc
Q 023191 218 VCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH--KSLRGPRGAMIFFRKG 273 (286)
Q Consensus 218 ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~--K~l~gp~gG~l~~~~~ 273 (286)
+|+++|++||.|+||+.|....+..... ..|+.++|+| |.+....||+++++++
T Consensus 135 ~~~~~~i~lIeD~a~a~g~~~~g~~~G~--~gd~~~fSf~~~K~i~~geGG~v~~~~~ 190 (363)
T PF01041_consen 135 IARKHGIPLIEDAAQAFGARYKGRPVGS--FGDIAIFSFHPTKIITTGEGGAVVTNDP 190 (363)
T ss_dssp HHHHTT-EEEEE-TTTTT-EETTEETTS--SSSEEEEESSTTSSS-SSS-EEEEESTH
T ss_pred HHHHcCCcEEEccccccCceeCCEeccC--CCCceEecCCCCCCCcCCCCeeEEecHH
Confidence 9999999999999999998776543333 3688888875 9998889999999974
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=162.87 Aligned_cols=202 Identities=17% Similarity=0.125 Sum_probs=139.0
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHC--CCCCCCcceeEEeC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAF--RLDPEKWGVNVQSL 119 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--g~~~~~~~~~v~~~ 119 (286)
+.++|..|++ ++++.+.+++.+.+... .+ |+...+..++++++.+++.+.. +++++ +|++|
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~--~~------Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~----~i~~t 101 (404)
T PRK09265 34 KILKLNIGNPAPFGFEAPDEILRDVIRNLPTA--QG------YSDSKGLFSARKAIMQYYQQKGIPDVDVD----DIYIG 101 (404)
T ss_pred CeEEecCCCCCcCCCCCCHHHHHHHHHHhhcC--CC------CCCCCCcHHHHHHHHHHHhccCCCCCCcc----cEEEe
Confidence 5689988654 26788888887655331 12 3444666788888777776543 45554 59999
Q ss_pred CChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
+|++ ++..++.+++++||+|+++++.|..+ ...+...|.....++.+.+ +++.+|++++++.+++ ++++
T Consensus 102 ~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~--------~~~~~~~g~~~v~~~~~~~-~~~~~d~~~l~~~~~~-~~~~ 171 (404)
T PRK09265 102 NGVSELIVMAMQALLNNGDEVLVPAPDYPLW--------TAAVSLSGGKPVHYLCDEE-AGWFPDLDDIRSKITP-RTKA 171 (404)
T ss_pred CChHHHHHHHHHHhCCCCCEEEEeCCCCcCh--------HHHHHHcCCEEEEEecccc-cCCCCCHHHHHHhccc-cceE
Confidence 9999 77778889999999999999665543 3233445655544543222 3578999999999877 8999
Q ss_pred EEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC---CC-c-ceEEEeCCCCCCC--CCCce
Q 023191 199 IVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---FE-Y-ADVVTTTTHKSLR--GPRGA 266 (286)
Q Consensus 199 v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~---~~-~-~D~v~~s~~K~l~--gp~gG 266 (286)
|+++ |+| +|...+ +++|+++|+++|+++|+|+++.. ....+..... +. . .-+++.|++|+|+ |.+-|
T Consensus 172 v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG 250 (404)
T PRK09265 172 IVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDK-ILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVG 250 (404)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhh-ccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceE
Confidence 8887 777 777777 88899999999999999999652 2211111111 11 1 2255789999874 55669
Q ss_pred EEEEe
Q 023191 267 MIFFR 271 (286)
Q Consensus 267 ~l~~~ 271 (286)
+++..
T Consensus 251 ~~v~~ 255 (404)
T PRK09265 251 WMVLS 255 (404)
T ss_pred EEEEe
Confidence 99863
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=161.36 Aligned_cols=205 Identities=16% Similarity=0.090 Sum_probs=142.4
Q ss_pred ecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHH
Q 023191 51 LIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVY 129 (286)
Q Consensus 51 L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l 129 (286)
|...-.++.+.+++++.+.+...+ +.+. .+ .+..++++.+++++++++|++.+ ++++++|++ ++..++
T Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~~--~~---~~~~~~~~~~~~~la~~~g~~~~----~~~~~~ggt~a~~~a~ 93 (371)
T PRK13520 25 LSSMCTEPHPIARKAHEMFLETNL--GDPG--LF---PGTAKLEEEAVEMLGELLHLPDA----YGYITSGGTEANIQAV 93 (371)
T ss_pred eeeeecCchHHHHHHHHHHHhcCC--CCcc--cC---ccHHHHHHHHHHHHHHHhCCCCC----CeEEecCcHHHHHHHH
Confidence 444445677888899988776432 2221 12 23456667888999999998754 367777777 877676
Q ss_pred HHhcC----CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CC
Q 023191 130 TALLK----PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (286)
Q Consensus 130 ~a~~~----~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~ 204 (286)
.++.+ +||+|++++..|.++.. .+...|.+++.++. + +++.+|+++|++.+++ ++++|++. ++
T Consensus 94 ~~~~~~~~~~~~~vl~~~~~h~s~~~--------~~~~~g~~~~~v~~--~-~~~~~d~~~l~~~i~~-~~~~vi~~~~~ 161 (371)
T PRK13520 94 RAARNLAKAEKPNIVVPESAHFSFDK--------AADMLGVELRRAPL--D-DDYRVDVKAVEDLIDD-NTIGIVGIAGT 161 (371)
T ss_pred HHHHhhccCCCceEEecCcchHHHHH--------HHHHcCceEEEecC--C-CCCcCCHHHHHHHHhh-CCEEEEEEcCC
Confidence 66643 68999999976655422 33455666666653 3 4578999999999987 78766654 44
Q ss_pred C-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC--CC--CCcceEEEeCCCCCCCCCCc-eEEEEec-chhhh
Q 023191 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SP--FEYADVVTTTTHKSLRGPRG-AMIFFRK-GVKEI 277 (286)
Q Consensus 205 n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~--~~--~~~~D~v~~s~~K~l~gp~g-G~l~~~~-~~~~~ 277 (286)
| +|...|+++|.++|+++|+++++|++|+.+..+..... .. ..++|++++++|||..+|.+ |++++++ ++.+.
T Consensus 162 ~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~ 241 (371)
T PRK13520 162 TELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDA 241 (371)
T ss_pred cCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHh
Confidence 4 78999999999999999999999999986654322211 11 22589999999998776655 7666654 45444
Q ss_pred h
Q 023191 278 N 278 (286)
Q Consensus 278 ~ 278 (286)
.
T Consensus 242 l 242 (371)
T PRK13520 242 L 242 (371)
T ss_pred h
Confidence 3
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=161.82 Aligned_cols=205 Identities=14% Similarity=0.131 Sum_probs=145.2
Q ss_pred CceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 48 GLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
.++|+.++++ +|+.+++++.+.+......+| +. ....+++ +.++++++++++ +|++|+|++ +
T Consensus 24 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y------~~-~~~~~lr----~~ia~~~~~~~~----~i~it~G~~~~ 88 (351)
T PRK14807 24 KYKMDANETPFELPEEVIKNIQEIVKSSQVNIY------PD-PTAEKLR----EELARYCSVVPT----NIFVGNGSDEI 88 (351)
T ss_pred eeEccCCCCCCCCCHHHHHHHHHHhhcCcccCC------CC-ccHHHHH----HHHHHHhCCCcc----cEEEecCHHHH
Confidence 4678888874 689999999887653211122 22 1234455 666667788775 599999999 7
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-C
Q 023191 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (286)
Q Consensus 125 ~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~ 203 (286)
+..++.++++|||+|++++| .|..+...+...|.+++.++ .+ +++.+|++++++.+++.++|+|+++ +
T Consensus 89 l~~~~~~l~~~gd~Vlv~~p--------~y~~~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~~~~~~k~v~l~~p 157 (351)
T PRK14807 89 IHLIMLAFINKGDVVIYPHP--------SFAMYSVYSKIAGAVEIPVK--LK-EDYTYDVGSFIKVIEKYQPKLVFLCNP 157 (351)
T ss_pred HHHHHHHhcCCCCEEEEeCC--------ChHHHHHHHHHcCCeEEEee--cC-CCCCCCHHHHHHHhhccCCCEEEEeCC
Confidence 77788899999999999994 44433334456676555554 44 4578999999999975589999997 7
Q ss_pred CC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCC--CCCCceEEEEecchhhhh
Q 023191 204 SA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSL--RGPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 204 ~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~~ 278 (286)
+| +|...+.+++.++|++++.++|+|+++. .... ......+. ...+++.|++|++ .|.+-|+++.+.++.+..
T Consensus 158 ~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~-~~~~-~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~ 235 (351)
T PRK14807 158 NNPTGSVIEREDIIKIIEKSRGIVVVDEAYF-EFYG-NTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYL 235 (351)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCEEEEeCcch-hhcc-cchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHH
Confidence 77 7889999999999999888999999974 2221 11111111 1347899999987 455569999988877655
Q ss_pred cc
Q 023191 279 KQ 280 (286)
Q Consensus 279 ~~ 280 (286)
++
T Consensus 236 ~~ 237 (351)
T PRK14807 236 NL 237 (351)
T ss_pred HH
Confidence 53
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=165.29 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=144.9
Q ss_pred cCceecCCCCCCCHHHHHHhccccccC----CCC--CCCCCcccCCcchHHHHHHHHHHHHHHHCC----CCCCCcceeE
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNK----YSE--GYPGARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNV 116 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~----~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~~~~~v 116 (286)
+.|+|..+||+.+..+++.......+. ... .......|+...+..+|++++.+++.+.+| ++++ +|
T Consensus 39 g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~----~I 114 (468)
T PLN02450 39 GIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN----KL 114 (468)
T ss_pred eeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChH----He
Confidence 569999999976554444443322110 000 011122356667888999999999988776 3453 59
Q ss_pred EeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccc-cceeeeEEEecccC-CCCCCCCHHHHHHHhhh
Q 023191 117 QSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS-AVSIFFETMPYRLN-ESTGYIDYDQLEKSATL 193 (286)
Q Consensus 117 ~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~-~~~~~~d~e~l~~~i~~ 193 (286)
++|+|++ ++..++.++++|||.|++++|.|+. +...+. ..|.+++.++ .+ .+++.+|++++++.+.+
T Consensus 115 iit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~--------~~~~~~~~~g~~~v~v~--~~~~~~~~~~~~~le~~~~~ 184 (468)
T PLN02450 115 VLTAGATSANETLMFCLAEPGDAFLLPTPYYPG--------FDRDLKWRTGVEIVPIH--CSSSNGFQITESALEEAYQQ 184 (468)
T ss_pred EEccChHHHHHHHHHHhCCCCCEEEECCCCCCc--------hHHHHhhcCCcEEEEEe--cCCccCCcCCHHHHHHHHHH
Confidence 9999999 8887999999999999999954444 333333 3565555454 43 25678999999988754
Q ss_pred -----cCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC-------------Ccce
Q 023191 194 -----FRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF-------------EYAD 250 (286)
Q Consensus 194 -----~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~-------------~~~D 250 (286)
.++|+|+++ |+| +|...+ +++|+++|++|+++||+|++++.-..........+ ...-
T Consensus 185 ~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~v 264 (468)
T PLN02450 185 AQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRV 264 (468)
T ss_pred HHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcE
Confidence 278999998 777 776555 66788899999999999999653212111000000 0123
Q ss_pred EEEeCCCCCC--CCCCceEEEEecc-hhhhh
Q 023191 251 VVTTTTHKSL--RGPRGAMIFFRKG-VKEIN 278 (286)
Q Consensus 251 ~v~~s~~K~l--~gp~gG~l~~~~~-~~~~~ 278 (286)
+++.|++|.| .|.+.|++++.++ +....
T Consensus 265 i~l~S~SK~~~l~GlRiG~li~~~~~l~~~~ 295 (468)
T PLN02450 265 HIVYSLSKDLGLPGFRVGAIYSNDEMVVSAA 295 (468)
T ss_pred EEEEeccccCCCCCccEEEEEECCHHHHHHH
Confidence 6799999987 5667799999765 34443
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=163.20 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=143.6
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.|+|..++++ +|+.+++++.+++... ..|+ ...+ .+ +++.++++++++++ +|++++|++
T Consensus 20 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~--~~y~------~~~~-~~----lr~~ia~~~~~~~~----~i~~~~G~~~ 82 (346)
T TIGR01141 20 EVIKLNSNENPFGPPPKAKEALRAEADKL--HRYP------DPDP-AE----LKQALADYYGVDPE----QILLGNGSDE 82 (346)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHhHHHh--hcCC------CCCH-HH----HHHHHHHHhCcChH----HEEEcCCHHH
Confidence 56899888763 6889999998876431 1232 2222 34 44777778888764 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.+++++||+|+++++.| +.+...+...|.+++.++ ++ +++.+|++++++.+.+ ++++|+++
T Consensus 83 ~l~~~~~~l~~~gd~v~~~~p~y--------~~~~~~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~~~~-~~~~v~l~~ 150 (346)
T TIGR01141 83 IIELLIRAFLEPGDAVLVPPPTY--------SMYEISAKIHGAEVVKVP--LD-EDGQLDLEDILVAIDD-KPKLVFLCS 150 (346)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCH--------HHHHHHHHHcCCeEEEec--cC-CCCCCCHHHHHHhcCC-CCCEEEEeC
Confidence 77668888899999999999544 333334456676665554 44 3478999999998876 89999997
Q ss_pred CCC-CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCCC--CCCceEEEEecchh
Q 023191 203 ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLR--GPRGAMIFFRKGVK 275 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l~--gp~gG~l~~~~~~~ 275 (286)
++| +|...+++++.++|+.+ ++++|+|++|. +....+.....+. ..++++.|++|+|+ |++.|++++++++.
T Consensus 151 p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~ 229 (346)
T TIGR01141 151 PNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYG-EFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEII 229 (346)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchh-hhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHH
Confidence 776 77889999999999887 99999999976 2221110000000 13477899999984 44459999988877
Q ss_pred hhhcc
Q 023191 276 EINKQ 280 (286)
Q Consensus 276 ~~~~~ 280 (286)
+..+.
T Consensus 230 ~~~~~ 234 (346)
T TIGR01141 230 DALNK 234 (346)
T ss_pred HHHHh
Confidence 66553
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-20 Score=165.29 Aligned_cols=174 Identities=18% Similarity=0.156 Sum_probs=129.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHCCCC-CCCcceeEEeCCChH-HHHHHHHHhcC------------CC--CeEEeccCCCC
Q 023191 84 YGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGSP-SNFQVYTALLK------------PH--DRIMALDLPHG 147 (286)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~v~~~sG~~-a~~~~l~a~~~------------~G--d~Vl~~~~~~~ 147 (286)
|.......++|+++++++++++|.+ .+ .++++|+|++ ++..++.++.. +| +.|+++++.|.
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~---~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~ 106 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSED---ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHV 106 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCC---CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchh
Confidence 4555678899999999999999986 32 2588888888 88777777642 33 47787886776
Q ss_pred cccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc-CCC-CCCccCHHHHHHHHH
Q 023191 148 GHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG-ASA-YARLYDYERIRKVCN 220 (286)
Q Consensus 148 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~-~~n-~g~~~~l~~I~~ia~ 220 (286)
++.. .+...|.+++.++ .+ +++.+|+++|++.+.+. ++++|+++ ++| +|...|+++|+++|+
T Consensus 107 ~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~ 175 (345)
T cd06450 107 SVEK--------AAAYLDVKVRLVP--VD-EDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAE 175 (345)
T ss_pred HHHH--------HHHHHhcCeEEee--eC-CCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHH
Confidence 6543 2334566666665 44 34689999999998652 57777776 555 788899999999999
Q ss_pred hcCCEEEEeccccccccccCCCC---CCCCcceEEEeCCCCCCCCCCc-eEEEEe
Q 023191 221 KQKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRG-AMIFFR 271 (286)
Q Consensus 221 ~~~~~vivD~a~~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~gp~g-G~l~~~ 271 (286)
++|+++++|++|+.+........ ..+.++|++++|+|||+++|.| |+++++
T Consensus 176 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~ 230 (345)
T cd06450 176 KYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR 230 (345)
T ss_pred HhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH
Confidence 99999999999988876433221 1223589999999999999888 877654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=141.86 Aligned_cols=163 Identities=22% Similarity=0.257 Sum_probs=116.2
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
+++++++++++.+.+ ++.+++|++ ++.++++++.++|++|+++++.|.++.. . .+...|.+++.++
T Consensus 4 ~~~~~l~~~~~~~~~----~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~-----~~~~~g~~~~~v~-- 70 (170)
T cd01494 4 ELEEKLARLLQPGND----KAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW--V-----AAELAGAKPVPVP-- 70 (170)
T ss_pred HHHHHHHHHcCCCCC----cEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh--h-----HHHhcCCEEEEec--
Confidence 355888899965443 367767777 8888999999999999999988877752 1 2334565555554
Q ss_pred cCCCC-CCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceE
Q 023191 175 LNEST-GYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADV 251 (286)
Q Consensus 175 ~~~~~-~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~ 251 (286)
.+... ...|.+.+++.....++++++++ +.| .|...|+++|.++|+++|+++|+|++|..+............++|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~ 150 (170)
T cd01494 71 VDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADV 150 (170)
T ss_pred cCCCCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCE
Confidence 33222 23333456554444488999887 444 4577789999999999999999999998877754221122235999
Q ss_pred EEeCCCCCCCCCCceEEEEe
Q 023191 252 VTTTTHKSLRGPRGAMIFFR 271 (286)
Q Consensus 252 v~~s~~K~l~gp~gG~l~~~ 271 (286)
++.|+||+|++|++|++++|
T Consensus 151 ~~~s~~K~~~~~~~G~l~~~ 170 (170)
T cd01494 151 VTFSLHKNLGGEGGGVVIVK 170 (170)
T ss_pred EEEEcccccCCCceEEEEeC
Confidence 99999999999777999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=160.37 Aligned_cols=195 Identities=19% Similarity=0.183 Sum_probs=135.3
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCe
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDR 138 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~ 138 (286)
+|++++++.+++.+ +..++.+.+.+ .+.....+.+++.+++++|.+. .+++++|+.++.+++++++++||+
T Consensus 17 ~~~v~~a~~~~~~~-~~~~~~~~~~~---~~~~~~~~~l~~~la~~~~~~~-----~iv~~sg~~a~~~~~~~~~~~gd~ 87 (349)
T cd06454 17 HPEVIEAAKEALDK-YGVGAGGSRLI---SGTSDLHEELEEELAEFHGKEA-----ALVFSSGYAANDGVLSTLAGKGDL 87 (349)
T ss_pred CHHHHHHHHHHHHH-hCCCCCCcCee---cCCchHHHHHHHHHHHHhCCCC-----EEEeccHHHHHHHHHHHhcCCCCE
Confidence 68999999998875 43222221111 1223444556688888898753 477888877777678888999999
Q ss_pred EEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh----cCCcEEEEc-CCC-CCCccCH
Q 023191 139 IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL----FRPKLIVAG-ASA-YARLYDY 212 (286)
Q Consensus 139 Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~----~~tk~v~i~-~~n-~g~~~~l 212 (286)
|+++++.|+++.. .+...|.+++.++ .+|++++++++++ .++++++++ ++| +|...|+
T Consensus 88 Vl~~~~~~~~~~~--------~~~~~g~~~~~~~--------~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~ 151 (349)
T cd06454 88 IISDSLNHASIID--------GIRLSGAKKRIFK--------HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPL 151 (349)
T ss_pred EEEehhhhHHHHH--------HHHHcCCceEEec--------CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCH
Confidence 9999977666432 2234554443332 2478889888875 256777776 555 7788999
Q ss_pred HHHHHHHHhcCCEEEEeccccccccccCC-----CCCCCCcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 213 ERIRKVCNKQKAIMLADMAHISGLVAAGV-----IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 213 ~~I~~ia~~~~~~vivD~a~~~g~~~~~~-----~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
++|.++|++||+++|+|++|+.|...... ......++|++++|+||+|+. +||+++.++++.+..+
T Consensus 152 ~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~gG~i~~~~~~~~~~~ 222 (349)
T cd06454 152 PELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VGGYIAGSKELIDYLR 222 (349)
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cCCEEECCHHHHHHHH
Confidence 99999999999999999999877653211 011112589999999998865 6788888877665444
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=167.85 Aligned_cols=203 Identities=15% Similarity=0.152 Sum_probs=142.4
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHH-HCCC--CC-CCcceeEEeCC
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE-AFRL--DP-EKWGVNVQSLS 120 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~g~--~~-~~~~~~v~~~s 120 (286)
+.|+|..+++ ++|+.+.+++ +.+.. +. |+...+..++++++.+++.+ .++. .+ ++ .+|++|+
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~-~~~~~---~~------Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~--~~I~vT~ 168 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELV-DGIIG---DN------YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGE--FDLFAVE 168 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHH-HHHhc---CC------CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCc--CeEEEeC
Confidence 5688888887 3566777744 44422 11 45557788899888875544 3322 22 11 2699999
Q ss_pred ChH-HHHHHHHH-----hcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-CCCCCCHHHHHHHhhh
Q 023191 121 GSP-SNFQVYTA-----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATL 193 (286)
Q Consensus 121 G~~-a~~~~l~a-----~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~ 193 (286)
|++ ++..++.+ +++|||+|++++ |.|+.|...+.+.|..++.++++.++ ++|.+|++++++++++
T Consensus 169 Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~--------P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~ 240 (527)
T PRK09275 169 GGTAAMCYIFDSLKENGLLKAGDKIALMT--------PIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP 240 (527)
T ss_pred CHHHHHHHHHHHHhhhhcCCCCCEEEEeC--------CChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC
Confidence 999 77767775 689999999999 66666655556666556667766543 4589999999998887
Q ss_pred cCCcEEEEc-CCC-CCCccC---HHHHHHHHHh--cCCEEEEeccccccccccCCCCCCC---CcceEEEeCCCCCC--C
Q 023191 194 FRPKLIVAG-ASA-YARLYD---YERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPF---EYADVVTTTTHKSL--R 261 (286)
Q Consensus 194 ~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~~~~~~---~~~D~v~~s~~K~l--~ 261 (286)
++|+|+++ |+| +|...+ +++|+++|++ ++++||+|+++.. ... .. ...+ ...-+++.|++|+| .
T Consensus 241 -~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~-f~~-~~-~s~~~~~~~~~I~v~SfSK~f~mt 316 (527)
T PRK09275 241 -SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGT-FVD-DF-RSLFAVLPYNTILVYSFSKYFGAT 316 (527)
T ss_pred -CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChh-hcc-cc-cCHHHhCCCCEEEEeehhhhccCc
Confidence 99999987 777 776655 7788888964 5999999999652 221 11 1111 12447899999987 6
Q ss_pred CCCceEEEEecc
Q 023191 262 GPRGAMIFFRKG 273 (286)
Q Consensus 262 gp~gG~l~~~~~ 273 (286)
|+|-|+++++++
T Consensus 317 G~RlG~i~~~~~ 328 (527)
T PRK09275 317 GWRLGVIALHED 328 (527)
T ss_pred HhHHhhhhcCch
Confidence 777799999875
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=160.06 Aligned_cols=205 Identities=17% Similarity=0.133 Sum_probs=135.7
Q ss_pred CceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHH
Q 023191 48 GLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNF 126 (286)
Q Consensus 48 ~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~ 126 (286)
.++|..+++ .+++.+++++.+...... ..+| .....++| +.+++++|.+. .+++++|+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~--~~~~~~l~----~~la~~~~~~~-----~~~~~~Gs~a~~ 69 (353)
T PLN02721 7 VVDLRSDTVTKPTDAMRAAMANAEVDDD------VLGY--DPTALRLE----EEMAKIFGKEA-----ALFVPSGTMGNL 69 (353)
T ss_pred hhhhhcccccCCCHHHHHHHHhccCCCc------ccCC--CHHHHHHH----HHHHHHhCCce-----eEEecCccHHHH
Confidence 467777777 468888888875311100 1111 12244555 77778888764 377777877666
Q ss_pred HHHHHhcC-CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh------cCCcEE
Q 023191 127 QVYTALLK-PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL------FRPKLI 199 (286)
Q Consensus 127 ~~l~a~~~-~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~~tk~v 199 (286)
+++.++++ +||+|+++++.|.+....+. .+...|.+++.++ .+ +++.+|++++++.+++ .++++|
T Consensus 70 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v 141 (353)
T PLN02721 70 ISVLVHCDVRGSEVILGDNSHIHLYENGG-----ISTLGGVHPRTVK--NN-EDGTMDLDAIEAAIRPKGDDHFPTTRLI 141 (353)
T ss_pred HHHHHHccCCCCeEEEcCccceehhcccc-----hhhhcCceeEecC--CC-cCCCcCHHHHHHHHHhccCCCCCcceEE
Confidence 67888887 99999999966543221100 1234565555554 44 5678999999999973 278999
Q ss_pred EEc-CCC--CCCccC---HHHHHHHHHhcCCEEEEeccccccccc-cCCCCCC-CCcceEEEeCCCCCCCCCCceEEEEe
Q 023191 200 VAG-ASA--YARLYD---YERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSP-FEYADVVTTTTHKSLRGPRGAMIFFR 271 (286)
Q Consensus 200 ~i~-~~n--~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~-~~~~~~~-~~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (286)
+++ ++| +|...+ +++|.++|++||+++|+|++|..+... .+..... ..++|.++.++||+|++|.||+++.+
T Consensus 142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~ 221 (353)
T PLN02721 142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGS 221 (353)
T ss_pred EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecC
Confidence 996 444 345544 789999999999999999998755321 1221111 12588999999999998877767777
Q ss_pred cchhhh
Q 023191 272 KGVKEI 277 (286)
Q Consensus 272 ~~~~~~ 277 (286)
+++.+.
T Consensus 222 ~~~~~~ 227 (353)
T PLN02721 222 KSFIRK 227 (353)
T ss_pred HHHHHh
Confidence 766543
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=159.62 Aligned_cols=190 Identities=14% Similarity=0.102 Sum_probs=134.0
Q ss_pred CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-c
Q 023191 56 NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-L 133 (286)
Q Consensus 56 ~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~-~ 133 (286)
+..+++.++++.+.+.+.+.. +.. .+.+++.+++++++|.+. +++++|++ ++.+++.++ +
T Consensus 7 p~~~~~e~~a~~~~~~~~~~~--------~~g----~~~~~~e~~la~~~g~~~------~v~~~sgt~aL~~~l~al~~ 68 (376)
T TIGR02379 7 PPVTGQELEYIAEAISEGKLS--------GDG----PFSRRCETWLENRTGTKK------ALLTPSCTAALEMAALLLDI 68 (376)
T ss_pred CCCCHHHHHHHHHHHHcCCcc--------CCc----HHHHHHHHHHHHHhCCCe------EEEeCCHHHHHHHHHHHcCC
Confidence 345677788888888663311 111 233344477888888754 77778777 776677887 8
Q ss_pred CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHH
Q 023191 134 KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYE 213 (286)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~ 213 (286)
+|||+|+++++.|.++.. .+...|.+++.+ +++++++.+|++++++++++ +||+|+.+. .+|...+++
T Consensus 69 ~pGd~Viv~~~t~~~~~~--------~~~~~G~~~v~v--d~d~~~~~~d~~~le~~i~~-~tk~Iip~~-~~G~~~d~~ 136 (376)
T TIGR02379 69 QPGDEVIMPSYTFVSTAN--------AFVLRGAKIVFV--DIRPDTMNIDETLIESAITH-RTKAIVPVH-YAGVACDMD 136 (376)
T ss_pred CCcCEEEECCCCcHHHHH--------HHHHcCCEEEEE--ecCCCcCCCCHHHHHHhcCc-CceEEEEeC-CCCCccCHH
Confidence 999999999977666543 333567656555 45655688999999999987 899987542 268888999
Q ss_pred HHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCC--CC-CCCCceEEEEec-chhhh
Q 023191 214 RIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHK--SL-RGPRGAMIFFRK-GVKEI 277 (286)
Q Consensus 214 ~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K--~l-~gp~gG~l~~~~-~~~~~ 277 (286)
+|.++|++||++||+|++|+.|....+..... ..|+.++|+|+ .+ .|++||++++++ ++.+.
T Consensus 137 ~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~--~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~ 202 (376)
T TIGR02379 137 TIMALANKHQLFVIEDAAQGVMSTYKGRALGS--IGHLGTFSFHETKNYTSGGEGGALLINDQAFIER 202 (376)
T ss_pred HHHHHHHHCCCEEEEECccccCCccCCcccCC--CCCEEEEeCCCCCcCcccCCceEEEECCHHHHHH
Confidence 99999999999999999999886533322211 25777888764 44 466899988875 34433
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=158.75 Aligned_cols=208 Identities=16% Similarity=0.043 Sum_probs=142.9
Q ss_pred HcCceecCCCC------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC
Q 023191 46 WKGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL 119 (286)
Q Consensus 46 ~~~i~L~~~e~------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~ 119 (286)
.+.++|..+++ ++++.+++++.+.+...... .|+...+..++++++++++....+.+.+. .+|++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~--~~ii~t 102 (403)
T TIGR01265 31 KPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFN------GYAPSVGALAAREAVAEYLSSDLPGKLTA--DDVVLT 102 (403)
T ss_pred CCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCC------CCCCCCCCHHHHHHHHHHHHhhcCCCCCH--HHEEEe
Confidence 35788987765 46889999998877542211 23444667788877777777655543222 369999
Q ss_pred CChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
+|++ ++.+++.+++++||+|+++++.|.. +...+...|.+++.+++..+ +++.+|++++++++.+ ++++
T Consensus 103 ~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~--------~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~ 172 (403)
T TIGR01265 103 SGCSQAIEICIEALANPGANILVPRPGFPL--------YDTRAAFSGLEVRLYDLLPE-KDWEIDLDGLEALADE-KTVA 172 (403)
T ss_pred cChHHHHHHHHHHhCCCCCEEEEeCCCchh--------HHHHHHHcCCEEEEecCCcc-cCCccCHHHHHHHhCc-CccE
Confidence 9999 8887999999999999999955443 33334456655655553222 4578999999999877 8898
Q ss_pred EEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC---C-c-ceEEEeCCCCCCCCC--Cce
Q 023191 199 IVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---E-Y-ADVVTTTTHKSLRGP--RGA 266 (286)
Q Consensus 199 v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~---~-~-~D~v~~s~~K~l~gp--~gG 266 (286)
++++ |+| +|...+ +++|.++|+++|+++|+|+++.. ....+....++ . . .-+++.|++|.|+.| +-|
T Consensus 173 v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG 251 (403)
T TIGR01265 173 IVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGH-MVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLG 251 (403)
T ss_pred EEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccc-cccCCCCccchhhhccCCcEEEEeecccccCCCcceEE
Confidence 8887 766 776654 88999999999999999999652 22211110111 1 1 126689999986544 459
Q ss_pred EEEEec
Q 023191 267 MIFFRK 272 (286)
Q Consensus 267 ~l~~~~ 272 (286)
++++.+
T Consensus 252 ~~v~~~ 257 (403)
T TIGR01265 252 WIIIHD 257 (403)
T ss_pred EEEEeC
Confidence 998853
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=159.56 Aligned_cols=196 Identities=17% Similarity=0.191 Sum_probs=130.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd 137 (286)
+++.+++++.+.+... . .|+..... +++++++++++| +. + .+++++|+.++..++.+++++||
T Consensus 10 ~~~~v~~a~~~~~~~~---~-----~~~~~~~~----~~l~~~~a~~~g-~~-~---~~~~~~gt~a~~~~~~~l~~~gd 72 (338)
T cd06502 10 PTPEMLEAMAAANVGD---D-----VYGEDPTT----AKLEARAAELFG-KE-A---ALFVPSGTAANQLALAAHTQPGG 72 (338)
T ss_pred CCHHHHHHHHhcccCC---c-----ccCCCHHH----HHHHHHHHHHhC-CC-e---EEEecCchHHHHHHHHHhcCCCC
Confidence 6899999998765321 0 12222333 345588888888 32 2 34444454488778899999999
Q ss_pred eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh------cCCcEEEEc-CCCCCC--
Q 023191 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL------FRPKLIVAG-ASAYAR-- 208 (286)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~~tk~v~i~-~~n~g~-- 208 (286)
+|+++++.|.++..... ...+.|.+++.++ .+ ++.+|++++++++++ .++++|+++ ++|.|.
T Consensus 73 ~v~~~~~~~~~~~~~~~-----~~~~~g~~~~~v~--~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~ 143 (338)
T cd06502 73 SVICHETAHIYTDEAGA-----PEFLSGVKLLPVP--GE--NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVY 143 (338)
T ss_pred eEEEecCcceeeecCCc-----HHHHcCceEEeec--CC--CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCcccc
Confidence 99999977765432110 1223565555554 33 367999999999874 268999997 666663
Q ss_pred -ccCHHHHHHHHHhcCCEEEEeccccccccc-cCCCCCCC-CcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 209 -LYDYERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 209 -~~~l~~I~~ia~~~~~~vivD~a~~~g~~~-~~~~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
..++++|+++|+++|+++|+|+||..+... .+.....+ .++|+++.|+||+|+.|.|++++.++++.+..+
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~ 217 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARAR 217 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHH
Confidence 446788999999999999999998644321 11110111 248899999999998887676777777655443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=158.65 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=142.8
Q ss_pred cCceecCCCC------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC-CCCCCcceeEEeC
Q 023191 47 KGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSL 119 (286)
Q Consensus 47 ~~i~L~~~e~------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g-~~~~~~~~~v~~~ 119 (286)
+.++|..+++ ++++.+++++.+.+..... ..|+...+..++++++.+++.+..+ ++++ +|++|
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~----~i~~t 101 (401)
T TIGR01264 32 PMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKY------NGYAPTVGALSAREAIASYYHNPDGPIEAD----DVVLC 101 (401)
T ss_pred CeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCC------CCCCCCCCCHHHHHHHHHHHhhcCCCCCHH----HEEEC
Confidence 5588987765 3688899998877654211 1244456677888888888775322 3443 59999
Q ss_pred CChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
+|++ ++.+++.+++++||+|++++ |.|..+...+...|..+..++++.+ +++.+|++.+++.+++ ++++
T Consensus 102 ~G~~~al~~~~~~l~~~gd~v~i~~--------P~y~~~~~~~~~~g~~v~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~ 171 (401)
T TIGR01264 102 SGCSHAIEMCIAALANAGQNILVPR--------PGFPLYETLAESMGIEVKLYNLLPD-KSWEIDLKQLESLIDE-KTAA 171 (401)
T ss_pred cChHHHHHHHHHHhCCCCCEEEEeC--------CCChhHHHHHHHcCCEEEEeecCCc-cCCCCCHHHHHHHhcc-CceE
Confidence 9999 88778899999999999999 5555444455667766655554322 3578999999998877 7899
Q ss_pred EEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC---Cc--ceEEEeCCCCCC--CCCCce
Q 023191 199 IVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---EY--ADVVTTTTHKSL--RGPRGA 266 (286)
Q Consensus 199 v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~---~~--~D~v~~s~~K~l--~gp~gG 266 (286)
|+++ |+| +|... ++++|+++|+++|++||+|+++. .....+....++ .. .-+++.|++|.| .|.|-|
T Consensus 172 v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG 250 (401)
T TIGR01264 172 LIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYG-DMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLG 250 (401)
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhh-hhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEE
Confidence 9887 666 66555 47889999999999999999964 322211111111 11 136799999975 444559
Q ss_pred EEEEec
Q 023191 267 MIFFRK 272 (286)
Q Consensus 267 ~l~~~~ 272 (286)
++++.+
T Consensus 251 ~iv~~~ 256 (401)
T TIGR01264 251 WIIIHD 256 (401)
T ss_pred EEEecC
Confidence 999874
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=157.64 Aligned_cols=208 Identities=15% Similarity=0.161 Sum_probs=139.3
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +++.+.+++.+..... .+ |+...+..++++++.+++.+ .|...+. .+|++|+|++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~--~~------Y~~~~g~~~lr~~ia~~~~~-~~~~~~~--~~i~~t~G~~~ 99 (397)
T PRK07568 31 KVYHLNIGQPDIKTPEVFFEAIKNYDEEV--LA------YSHSQGIPELREAFAKYYKK-WGIDVEP--DEILITNGGSE 99 (397)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHhcCC--cC------cCCCCCCHHHHHHHHHHHHH-hCCCCCc--ceEEEcCChHH
Confidence 46888888773 5788888887654221 12 34456678888888887763 4442222 3699999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCC-CCHHHHHHHhhhcCCcEEEEc
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY-IDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++..++.+++++||+|++++|.|..+ ...+...|..++.++++.+ +++. .|++++++++++ ++++|+++
T Consensus 100 al~~~~~~l~~~gd~Vl~~~p~y~~~--------~~~~~~~g~~~~~v~~~~~-~g~~~~~~~~l~~~~~~-~~~~v~i~ 169 (397)
T PRK07568 100 AILFAMMAICDPGDEILVPEPFYANY--------NGFATSAGVKIVPVTTKIE-EGFHLPSKEEIEKLITP-KTKAILIS 169 (397)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCccH--------HHHHHHcCCEEEEeecCcc-cCCCCCCHHHHHHhcCc-cceEEEEE
Confidence 77778888899999999999544432 2233456665655553212 3344 468999999877 89999886
Q ss_pred -CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCC-CCCC--CCc---ceEEEeCCCCCCC--CCCceEEE
Q 023191 203 -ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGV-IPSP--FEY---ADVVTTTTHKSLR--GPRGAMIF 269 (286)
Q Consensus 203 -~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~~--~~~---~D~v~~s~~K~l~--gp~gG~l~ 269 (286)
|+| +|... ++++|+++|+++++++|+|+++. +....+. .... +.+ .-+++.|++|.|+ |.+.|+++
T Consensus 170 ~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~-~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~ 248 (397)
T PRK07568 170 NPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYR-EFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLI 248 (397)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccch-hcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEe
Confidence 766 77655 47889999999999999999964 2221111 1111 111 2377899999885 55569999
Q ss_pred Ee-cchhh
Q 023191 270 FR-KGVKE 276 (286)
Q Consensus 270 ~~-~~~~~ 276 (286)
+. +++.+
T Consensus 249 ~~~~~~~~ 256 (397)
T PRK07568 249 SKNKELIA 256 (397)
T ss_pred cCCHHHHH
Confidence 85 45554
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=158.13 Aligned_cols=215 Identities=14% Similarity=0.118 Sum_probs=145.0
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcce-eEEeCCCh
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGV-NVQSLSGS 122 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~v~~~sG~ 122 (286)
.+.++|..+.+. +++.+.+++.+.+.... ...|+...+..++++++++++.+.+|...+. . +|++|+|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~--~~~i~~t~G~ 100 (395)
T PRK08175 29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQRPD------THGYSTSRGIPRLRRAISRWYQDRYDVDIDP--ESEAIVTIGS 100 (395)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhCCC------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCcEEEccCc
Confidence 356788776553 46667777666553311 1224556778899999999998887763321 2 59999999
Q ss_pred H-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh--cCCcEE
Q 023191 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLI 199 (286)
Q Consensus 123 ~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v 199 (286)
+ ++.+++.++++|||+|++++|.|+.+ ...+...|.++..++ .+.+ ..+.++++++++. .++++|
T Consensus 101 ~~~l~~~~~~~~~~gd~Vlv~~P~y~~~--------~~~~~~~g~~~~~v~--~~~~--~~~~~~l~~~l~~~~~~~~~v 168 (395)
T PRK08175 101 KEGLAHLMLATLDHGDTVLVPNPSYPIH--------IYGAVIAGAQVRSVP--LVEG--VDFFNELERAIRESYPKPKMM 168 (395)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcch--------HHHHHHcCCeEEEEe--cccC--CCcHHHHHHHHhhccCCceEE
Confidence 8 77668888999999999999555443 323445676555554 4422 2247888887764 268999
Q ss_pred EEc-CCC-CCCccCH---HHHHHHHHhcCCEEEEeccccccccccCCCCC--CCC---cceEEEeCCCCCCCCC--CceE
Q 023191 200 VAG-ASA-YARLYDY---ERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFE---YADVVTTTTHKSLRGP--RGAM 267 (286)
Q Consensus 200 ~i~-~~n-~g~~~~l---~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~---~~D~v~~s~~K~l~gp--~gG~ 267 (286)
+++ |+| +|...+. ++|+++|++||+++|+|+++..-......... .+. ...+++.|++|.|+.| +.|+
T Consensus 169 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~ 248 (395)
T PRK08175 169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGF 248 (395)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhhee
Confidence 987 677 7766665 78999999999999999997532221111111 111 1336689999998444 4599
Q ss_pred EEEecchhhhhcc
Q 023191 268 IFFRKGVKEINKQ 280 (286)
Q Consensus 268 l~~~~~~~~~~~~ 280 (286)
++.++++.+..++
T Consensus 249 ~~~~~~l~~~~~~ 261 (395)
T PRK08175 249 MVGNPELVSALAR 261 (395)
T ss_pred eeCCHHHHHHHHH
Confidence 9998888776654
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-19 Score=162.06 Aligned_cols=205 Identities=14% Similarity=0.107 Sum_probs=135.5
Q ss_pred CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhc
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL 133 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~ 133 (286)
+-.+.|+++++++.+++.+..+..|.-. .+..+ ...+.+++.+++++|.+. .+++.+|++++.+++ ..+
T Consensus 89 g~s~l~~~vieAv~~~~~~y~~l~~~l~---~g~~g--~r~~~le~~lA~l~gae~-----alvv~sg~aAi~l~l-~~l 157 (454)
T TIGR00474 89 GRAPLAEEAIEAVTDAARGYSNLEYDLE---TGKRG--SRYSHVEGLLCELTGAED-----ALVVNNNAAAVLLAL-NTL 157 (454)
T ss_pred CCCCCCHHHHHHHHHHHhcccchhcccc---ccccc--hHHHHHHHHHHHHhCCCc-----EEEECCHHHHHHHHH-HHh
Confidence 4446799999999988865211111100 01111 112345588999999875 377888887776566 457
Q ss_pred CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCC---C--
Q 023191 134 KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAY---A-- 207 (286)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n~---g-- 207 (286)
.+||+|++++.+|..+-.. +.+ .......|.+++.+ +.+ ...|++++++++++ +|++|++. ++|+ |
T Consensus 158 ~~GdeVIvs~~e~v~~ggs-~~i-~~~~~~~G~~~~~v--~~~---~~~~l~dle~aI~~-~T~lv~~~h~sN~~~~G~~ 229 (454)
T TIGR00474 158 AKGKEVIVSRGELVEIGGS-FRI-PDVMEQSGAKLVEV--GTT---NRTHLKDYEDAITE-NTALLLKVHTSNYRIVGFT 229 (454)
T ss_pred CCcCEEEECCChhhhhcch-hhH-HHHHHHcCCEEEEe--CCC---CCCCHHHHHHhcCc-CCEEEEEEccCcccccCCC
Confidence 9999999998775332111 111 01223456555444 322 24589999999988 99998875 7773 4
Q ss_pred CccCHHHHHHHHHhcCCEEEEecccccccccc----CC--CC---CCCC-cceEEEeCCCCCCCCCCceEEEEecchhhh
Q 023191 208 RLYDYERIRKVCNKQKAIMLADMAHISGLVAA----GV--IP---SPFE-YADVVTTTTHKSLRGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 208 ~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~----~~--~~---~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~ 277 (286)
...|+++|+++||+||+++++|.+ .|.+.. ++ .+ .++. |+|++++|+||||+||.+|++++++++.+.
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~~--sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~~i~~ 307 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDLG--SGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKELIER 307 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEECC--CcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECHHHHHh
Confidence 478999999999999999999975 343210 11 11 1222 699999999999999999999999887654
Q ss_pred hc
Q 023191 278 NK 279 (286)
Q Consensus 278 ~~ 279 (286)
++
T Consensus 308 l~ 309 (454)
T TIGR00474 308 LK 309 (454)
T ss_pred hh
Confidence 43
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-19 Score=160.92 Aligned_cols=203 Identities=16% Similarity=0.138 Sum_probs=144.2
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +++.+++++.+.+.. . .| | +..+..+++ +.++++++++++ +|++|+|++
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~--~~-----~-p~~g~~~lr----~~ia~~~~~~~~----~i~~t~G~~~ 92 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLDE-L--AL-----Y-PDGYAPELR----TKVAKHLGVDEE----QLLFGAGLDE 92 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHH-h--hc-----C-CCCcHHHHH----HHHHHHhCCCHH----HEEECCCHHH
Confidence 56889888874 688899998876643 1 11 1 123455555 666666788764 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.+++++||+|++++|.| ..+...+...|.++..+++ + ++.+|++++++.+++ ++++++++
T Consensus 93 ~l~~~~~~~~~~gd~v~~~~p~y--------~~~~~~~~~~g~~~~~~~~--~--~~~~d~~~l~~~~~~-~~~~v~i~~ 159 (359)
T PRK03158 93 VIQMISRALLNPGTNTVMAEPTF--------SQYRHNAIIEGAEVREVPL--K--DGGHDLEAMLKAIDE-QTKIVWICN 159 (359)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCH--------HHHHHHHHHcCCeEEEEec--C--CCCcCHHHHHHhcCC-CCCEEEEeC
Confidence 77768888999999999999544 4433344556766666654 3 467899999998877 89999987
Q ss_pred CCC-CCCccCHHHHHHHHHh--cCCEEEEeccccccccccCCCCCCC---C--cceEEEeCCCCCCC--CCCceEEEEec
Q 023191 203 ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPF---E--YADVVTTTTHKSLR--GPRGAMIFFRK 272 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~~~~~~---~--~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (286)
|+| +|...+.++|.++++. +++++|+|+++...... +..+..+ . ...+++.|++|.|+ |.+.|++++++
T Consensus 160 p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~ 238 (359)
T PRK03158 160 PNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTA-EDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASE 238 (359)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCC-cccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCH
Confidence 777 7888899999888877 59999999997543221 1111110 0 14578899999885 55569999988
Q ss_pred chhhhhcc
Q 023191 273 GVKEINKQ 280 (286)
Q Consensus 273 ~~~~~~~~ 280 (286)
++.+..++
T Consensus 239 ~~~~~~~~ 246 (359)
T PRK03158 239 ELIEKLNI 246 (359)
T ss_pred HHHHHHHH
Confidence 87765543
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-19 Score=161.96 Aligned_cols=206 Identities=12% Similarity=0.093 Sum_probs=135.4
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL 132 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~ 132 (286)
.+-.+.++++.+++.+++.+..+..|.. ..+..+ ..-+.+++.+++++|.+. .+++++|+.++.+++. .
T Consensus 93 lg~s~l~~~v~eav~~~~~~~~~le~~l---~~g~~g--~r~~~~e~~lA~l~Gae~-----a~vv~sgtaAl~l~l~-~ 161 (464)
T PRK04311 93 LGRALLSEAAIEAVTEAARGYSNLEYDL---ATGKRG--SRDRALAALLCALTGAED-----ALVVNNNAAAVLLALN-A 161 (464)
T ss_pred CCCCCCCHHHHHHHHHHHhcccccccch---hhcccc--hHHHHHHHHHHHHhCCCe-----EEEECCHHHHHHHHHH-H
Confidence 3445689999999998876521111100 001011 112245588899999864 3777777777765664 4
Q ss_pred cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCC---C-
Q 023191 133 LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAY---A- 207 (286)
Q Consensus 133 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n~---g- 207 (286)
+.+||+|++++.++.+.-. .+.. .......|.+++.+ +.+ ...+++++++++++ +|++|++. ++|+ |
T Consensus 162 l~~GdeVIvs~~e~~~~gg-s~~i-~~~~~~~G~~l~~v--~~~---~~t~~~dle~aI~~-~TklV~~vh~sN~~i~G~ 233 (464)
T PRK04311 162 LAAGKEVIVSRGELVEIGG-AFRI-PDVMRQAGARLVEV--GTT---NRTHLRDYEQAINE-NTALLLKVHTSNYRIEGF 233 (464)
T ss_pred hCCCCEEEEcchhhhhcCc-chhh-HHHHHHCCcEEEEE--CCC---CCCCHHHHHHhcCc-cCeEEEEEcCCCcccccc
Confidence 6899999999866543211 1111 01123456555444 322 34579999999988 89998875 7773 3
Q ss_pred -CccCHHHHHHHHHhcCCEEEEeccccccccc----cC--CCC---CCCC-cceEEEeCCCCCCCCCCceEEEEecchhh
Q 023191 208 -RLYDYERIRKVCNKQKAIMLADMAHISGLVA----AG--VIP---SPFE-YADVVTTTTHKSLRGPRGAMIFFRKGVKE 276 (286)
Q Consensus 208 -~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~----~~--~~~---~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~~~~~ 276 (286)
...|+++|+++||+||+++++|+++ |.+. .+ ..+ .++. ++|++++|+|||++||++|++++++++.+
T Consensus 234 ~~~~dl~eI~~lak~~gi~vivD~gs--G~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li~ 311 (464)
T PRK04311 234 TKEVSLAELAALGKEHGLPVVYDLGS--GSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELIA 311 (464)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEECCC--cccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHHH
Confidence 5679999999999999999999963 2221 00 111 1122 69999999999999999999999998876
Q ss_pred hhc
Q 023191 277 INK 279 (286)
Q Consensus 277 ~~~ 279 (286)
.++
T Consensus 312 ~l~ 314 (464)
T PRK04311 312 RLK 314 (464)
T ss_pred HHh
Confidence 555
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=159.43 Aligned_cols=206 Identities=16% Similarity=0.165 Sum_probs=145.4
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|+.++|+ +|+.+++++.+.+......+|+ . .+..+++ +.+++++|++.++ +|++|+|++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~------~-~~~~~lr----~~ia~~~~~~~~~---~I~~t~G~~~ 92 (356)
T PRK04870 27 GMVKLDAMENPYRLPAELRAELGERLAEVALNRYP------D-PRAAALK----AALRAAMGVPAGA---DVLLGNGSDE 92 (356)
T ss_pred CceeCcCCCCCCCCCHHHHHHHHHHhhccccccCC------C-CCHHHHH----HHHHHHhCcCCCC---cEEEcCCHHH
Confidence 57889999884 6899999998877532111232 2 2334555 6666777876532 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.+++++||+|++++ |.|..+...+...|.+++.++ ++ +++.+|++++++.+.+.++++|+++
T Consensus 93 ~i~~~~~~~~~~gd~vlv~~--------P~y~~~~~~~~~~g~~~~~i~--~~-~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 93 LIQLLALACAKPGATVLAPE--------PGFVMYRMSAKLAGLEFVGVP--LT-ADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred HHHHHHHHhcCCCCEEEECC--------CCHHHHHHHHHHcCCEEEEec--CC-CCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 77778888899999999999 555544445667786665554 44 4688999999999875589999998
Q ss_pred CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCC--CCCCceEEEEecchhhh
Q 023191 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSL--RGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~ 277 (286)
|+| +|...+.+++.++++..++++|+|+++.. .......+ .+. ...+++.|++| + .|.+.|++++++++.+.
T Consensus 162 p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~-~~~~~~~~-~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~ 238 (356)
T PRK04870 162 PNNPTGNLFDDADVERIIEAAPGLVVVDEAYQP-FAGDSWLP-RLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAE 238 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCEEEEECCchh-hcCcchHH-HHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHH
Confidence 766 77888888888888777889999999642 21111111 111 13477999999 5 34456999998877665
Q ss_pred hcc
Q 023191 278 NKQ 280 (286)
Q Consensus 278 ~~~ 280 (286)
.++
T Consensus 239 ~~~ 241 (356)
T PRK04870 239 LDK 241 (356)
T ss_pred HHH
Confidence 543
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=158.77 Aligned_cols=209 Identities=13% Similarity=0.087 Sum_probs=137.2
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +++.+.+++.+.+..... ......|+...+..+|++++.+++.+..|.+.+. .+|++|+|++
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~--~~I~it~Ga~~ 110 (409)
T PRK07590 35 KIIRLGIGDVTQPLPPAVIEAMHKAVDEMGT--AETFRGYGPEQGYDFLREKIAENDYQARGCDISA--DEIFISDGAKC 110 (409)
T ss_pred ceEEecCcCCCCCCCHHHHHHHHHHHhcccc--cCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCCh--hhEEECCCHHH
Confidence 56899988884 578888888877654110 0111234555778899999999887777653332 3699999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee---------eEEEecccCC-CCCCCCHHHHHHHhhh
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF---------FETMPYRLNE-STGYIDYDQLEKSATL 193 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~v~~~~~~-~~~~~d~e~l~~~i~~ 193 (286)
++. ++..+++|||+|++++ |+|+.+...+...|.. .++++++++. +++.+|+++ +
T Consensus 111 al~-~l~~~~~~gd~V~v~~--------P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~ 175 (409)
T PRK07590 111 DTG-NILDIFGPDNTIAVTD--------PVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE------E 175 (409)
T ss_pred HHH-HHHHhcCCCCEEEEeC--------CCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc------c
Confidence 766 4556789999999999 4444444444555643 0133334442 245555431 3
Q ss_pred cCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC---CCc---ceEEEeCCCCCC--
Q 023191 194 FRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---FEY---ADVVTTTTHKSL-- 260 (286)
Q Consensus 194 ~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~---~~~---~D~v~~s~~K~l-- 260 (286)
++|+|+++ |+| +|...+ +++|+++|++|+++||+|+++.. ....+....+ +.. .-+++.|++|+|
T Consensus 176 -~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 253 (409)
T PRK07590 176 -KVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEA-FISDPSLPHSIYEIEGARECAIEFRSFSKTAGF 253 (409)
T ss_pred -CceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchh-hccCCCCCcchhhCCCcccceEEEecCccccCC
Confidence 89999997 666 775555 66788889999999999999653 2221111111 111 236689999987
Q ss_pred CCCCceEEEEecchhh
Q 023191 261 RGPRGAMIFFRKGVKE 276 (286)
Q Consensus 261 ~gp~gG~l~~~~~~~~ 276 (286)
.|.+-|++++.+++.+
T Consensus 254 pGlRiG~~i~~~~li~ 269 (409)
T PRK07590 254 TGTRCAYTVVPKELKG 269 (409)
T ss_pred cCceeEEEEcCHHHhh
Confidence 4556699999887665
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-19 Score=159.68 Aligned_cols=203 Identities=16% Similarity=0.125 Sum_probs=143.3
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..|+|+ +|+.+++++.+... ...|+ . .+..+++ +.+++++|++++ +|++|+|++
T Consensus 53 ~~i~l~~n~~p~~~~~~v~~a~~~~~~---~~~Yp------~-~~~~~lr----~~ia~~~~~~~~----~I~~t~Ga~~ 114 (380)
T PLN03026 53 DIVKLDANENPYGPPPEVLEALGNMKF---PYVYP------D-PESRRLR----AALAEDSGLESE----NILVGCGADE 114 (380)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHhhHh---hccCC------C-CCHHHHH----HHHHHHhCcChh----hEEEcCCHHH
Confidence 57999999874 67888888864211 01122 2 2234444 777777888775 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.+++++||+|++++ |.|..|...+...|.++..++ .+ +++.+|++++++.+...++++|+++
T Consensus 115 ~i~~~~~~~~~~gd~Vlv~~--------P~y~~y~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~~~~~~~~v~l~~ 183 (380)
T PLN03026 115 LIDLLMRCVLDPGDKIIDCP--------PTFGMYVFDAAVNGAEVIKVP--RT-PDFSLDVPRIVEAVETHKPKLLFLTS 183 (380)
T ss_pred HHHHHHHHhcCCCCEEEEcC--------CChHHHHHHHHHcCCEEEEee--cC-CCCCcCHHHHHHHHhccCCcEEEEeC
Confidence 77778888999999999999 555555445556777666665 33 4688999999999843389999998
Q ss_pred CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCC--CCCCceEEEEecchhhh
Q 023191 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSL--RGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~ 277 (286)
|+| +|...+.+++.++++.. ++||+|+++.. ....+.....+. ...+++.|++|.| .|.|-|+++++.++.+.
T Consensus 184 P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~-~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~ 261 (380)
T PLN03026 184 PNNPDGSIISDDDLLKILELP-ILVVLDEAYIE-FSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEY 261 (380)
T ss_pred CCCCCCCCCCHHHHHHHHhcC-CEEEEECcchh-hcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHH
Confidence 666 78899999999999865 89999999642 221110000011 1458899999987 45566999998887765
Q ss_pred hcc
Q 023191 278 NKQ 280 (286)
Q Consensus 278 ~~~ 280 (286)
.++
T Consensus 262 l~~ 264 (380)
T PLN03026 262 LWR 264 (380)
T ss_pred HHH
Confidence 543
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=155.54 Aligned_cols=209 Identities=17% Similarity=0.103 Sum_probs=142.3
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +++.+.+++.+.... . ..|+...+..++++++++++++.+|.+.+. .+|++|+|++
T Consensus 25 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~-~-------~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~--~~I~it~G~~~ 94 (374)
T PRK05839 25 KGLDLTIGEPQFETPKFIQDALKNNAHL-L-------NKYPKSAGEESLREAQRGFFKRRFKIELKE--NELIPTFGTRE 94 (374)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHhhc-c-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCc--ceEEEecCcHH
Confidence 67899888874 577788887654422 1 124555677899999999999988853222 3699999999
Q ss_pred HHHHHHHHhc--CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 124 SNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 124 a~~~~l~a~~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
++..++.+++ ++||.|+++. |+|+.|...+...|.+++.++++-+ +++.+|+++.+ + + ++|+|++
T Consensus 95 al~~~~~~~~~~~~gd~vlv~~--------P~y~~~~~~~~~~g~~v~~v~~~~~-~~~~~d~~~~~--~-~-~~k~v~i 161 (374)
T PRK05839 95 VLFNFPQFVLFDKQNPTIAYPN--------PFYQIYEGAAIASRAKVLLMPLTKE-NDFTPSLNEKE--L-Q-EVDLVIL 161 (374)
T ss_pred HHHHHHHHHhcCCCCCEEEECC--------CCchhhHHHHHhcCCEEEEeecccc-cCCcCCcchhh--h-c-cccEEEE
Confidence 7765667764 5899999999 6665555555677766666653212 35677765543 2 3 6999999
Q ss_pred c-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC--------C--cceEEEeCCCCCC--CCCC
Q 023191 202 G-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF--------E--YADVVTTTTHKSL--RGPR 264 (286)
Q Consensus 202 ~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~--------~--~~D~v~~s~~K~l--~gp~ 264 (286)
+ |+| +|...+ +++|+++|+++|+++|+|+++.. .......+..+ . ..-+++.|++|.| .|.|
T Consensus 162 ~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~-~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlR 240 (374)
T PRK05839 162 NSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSE-IYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLR 240 (374)
T ss_pred eCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhh-cccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccce
Confidence 8 666 775544 67888889999999999999653 22111111100 0 1237799999975 5556
Q ss_pred ceEEEEecchhhhhc
Q 023191 265 GAMIFFRKGVKEINK 279 (286)
Q Consensus 265 gG~l~~~~~~~~~~~ 279 (286)
.|+++.++++.+..+
T Consensus 241 iG~ii~~~~~~~~~~ 255 (374)
T PRK05839 241 SGFIAGDASILKKYK 255 (374)
T ss_pred eEEEecCHHHHHHHH
Confidence 699999887766554
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=156.62 Aligned_cols=209 Identities=16% Similarity=0.181 Sum_probs=146.6
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEeCCCh
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~~sG~ 122 (286)
..++|..+.+ ++++.+.+++.+.+.... .....|+...+...+++.+.+++.+.++. +++ +|++|+|+
T Consensus 34 ~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~----~i~~t~G~ 105 (394)
T PRK06836 34 NVFDFSLGNPSVPPPAAVKEALRELAEEED----PGLHGYMPNAGYPEVREAIAESLNRRFGTPLTAD----HIVMTCGA 105 (394)
T ss_pred CeEEecCcCCCCCCCHHHHHHHHHHHhcCC----cCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcC----cEEEeCCh
Confidence 3478877665 357888888877665321 11123455577888998898988877665 443 59999999
Q ss_pred H-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 123 ~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
+ ++..++.+++++||.|+++++.|..+ ...+...|.+++.++ .+.+++.+|++++++++++ ++++|++
T Consensus 106 ~~al~~~~~~l~~~gd~Vli~~p~~~~~--------~~~~~~~g~~v~~v~--~~~~~~~~d~~~l~~~~~~-~~~~v~~ 174 (394)
T PRK06836 106 AGALNVALKAILNPGDEVIVFAPYFVEY--------RFYVDNHGGKLVVVP--TDTDTFQPDLDALEAAITP-KTKAVII 174 (394)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCccH--------HHHHHHcCCEEEEEe--cCCccCcCCHHHHHhhcCc-CceEEEE
Confidence 9 77778899999999999999555443 323445666665565 4434578999999999987 8999998
Q ss_pred c-CCC-CCCccC---HHHHHHHHHh------cCCEEEEeccccccccccC-CCCCCCC--cceEEEeCCCCCCCCC--Cc
Q 023191 202 G-ASA-YARLYD---YERIRKVCNK------QKAIMLADMAHISGLVAAG-VIPSPFE--YADVVTTTTHKSLRGP--RG 265 (286)
Q Consensus 202 ~-~~n-~g~~~~---l~~I~~ia~~------~~~~vivD~a~~~g~~~~~-~~~~~~~--~~D~v~~s~~K~l~gp--~g 265 (286)
+ ++| +|...+ +++|+++|++ ||+++|+|+++.. ....+ .....+. ...+++.|++|.|+.| +-
T Consensus 175 ~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRi 253 (394)
T PRK06836 175 NSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYRE-IVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERI 253 (394)
T ss_pred eCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccc-cccCCCCCCChHHccCcEEEEecchhhccCcceee
Confidence 7 666 676655 6677888998 8999999999643 22211 1111111 2458899999988644 45
Q ss_pred eEEEEecchh
Q 023191 266 AMIFFRKGVK 275 (286)
Q Consensus 266 G~l~~~~~~~ 275 (286)
|++++++++.
T Consensus 254 G~~~~~~~~~ 263 (394)
T PRK06836 254 GYIAVNPEME 263 (394)
T ss_pred EEEecCHHHh
Confidence 9999987653
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=155.92 Aligned_cols=207 Identities=18% Similarity=0.145 Sum_probs=140.1
Q ss_pred cCceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
+.++|..+++ +.++++++++.+++.. |..+++..... .+...+...+++.++++++.+. .|++++|+.
T Consensus 17 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~---~g~~~~~~~l~~~la~~~~~~~-----~i~~~~G~~ 87 (360)
T TIGR00858 17 RLLNFSSNDYLGLASHPEVIQAAQQGAEQ-YGAGSTASRLV---SGNSPLHEELEEELAEWKGTEA-----ALLFSSGYL 87 (360)
T ss_pred eEEecccCCcccCCCCHHHHHHHHHHHHh-cCCCCCCcCcc---cCCcHHHHHHHHHHHHHhCCCC-----EEEECchHH
Confidence 5688888764 2468999999988754 33333221111 1112333445577777777532 599999987
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc---CCcEEE
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF---RPKLIV 200 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~---~tk~v~ 200 (286)
++..++.+++++||+|++.++.|.++.. .+...|..++.++ .+|++++++.+++. ++++|+
T Consensus 88 ~~~~~l~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~~~~~~~--------~~d~~~l~~~~~~~~~~~~~~v~ 151 (360)
T TIGR00858 88 ANVGVISALVGKGDLILSDALNHASLID--------GCRLSGARVRRYR--------HNDVEHLERLLEKNRGERRKLIV 151 (360)
T ss_pred HHHHHHHHhCCCCCEEEEEccccHHHHH--------HHHhcCCceEEec--------CCCHHHHHHHHHHcccCCCeEEE
Confidence 6555778889999999999966665533 3334554443332 25889999988752 467777
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCC----CCCC--CcceEEEeCCCCCCCCCCceEEEEec
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI----PSPF--EYADVVTTTTHKSLRGPRGAMIFFRK 272 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~----~~~~--~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (286)
++ ..| +|...++++|.++|+++|+++|+|++|+.+....... ...+ .+.|+++.|++|+|++ .||++++++
T Consensus 152 ~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~gG~~~~~~ 230 (360)
T TIGR00858 152 TDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-YGAYVAGSQ 230 (360)
T ss_pred EeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-cCcEEEcCH
Confidence 76 333 6678899999999999999999999998765432200 0111 1478999999998854 679999888
Q ss_pred chhhhhc
Q 023191 273 GVKEINK 279 (286)
Q Consensus 273 ~~~~~~~ 279 (286)
++.+..+
T Consensus 231 ~~~~~~~ 237 (360)
T TIGR00858 231 ALIDYLI 237 (360)
T ss_pred HHHHHHH
Confidence 7766543
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-19 Score=159.81 Aligned_cols=202 Identities=16% Similarity=0.139 Sum_probs=142.2
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|+.|+|+ +|+.+++++.+.+.... .|+. .+..+|+ +.++++++++++ +|++|+|++
T Consensus 30 ~~i~l~~nen~~~~~~~v~~a~~~~~~~~~--~Yp~-------~g~~~Lr----~aia~~~~~~~~----~I~vt~Gs~e 92 (366)
T PRK01533 30 SFVKLASNENPFGCSPRVLDELQKSWLDHA--LYPD-------GGATTLR----QTIANKLHVKME----QVLCGSGLDE 92 (366)
T ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHHHhcC--cCCC-------CCHHHHH----HHHHHHhCCCcc----eEEECCCHHH
Confidence 56899999985 68899999987654311 1322 3444555 666667788875 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..+++++++|||+|++++ |.|+.|...+...|.+++.++ .+ ++.+|++++++.+++ ++++++++
T Consensus 93 ~i~~~~~~l~~~gd~vlv~~--------P~y~~~~~~~~~~g~~v~~v~--~~--~~~~d~~~l~~~~~~-~~~~v~i~~ 159 (366)
T PRK01533 93 VIQIISRAVLKAGDNIVTAG--------ATFPQYRHHAIIEGCEVKEVA--LN--NGVYDLDEISSVVDN-DTKIVWICN 159 (366)
T ss_pred HHHHHHHHhcCCCCEEEEcC--------CcHHHHHHHHHHcCCEEEEee--cC--CCCcCHHHHHHHhCc-CCcEEEEeC
Confidence 87778999999999999999 666655556667787666665 33 357999999999877 89999998
Q ss_pred CCC-CCCccCHHHHHHHH---HhcCCEEEEeccccccccccCCCCCCC---C--cceEEEeCCCCCCC--CCCceEEEEe
Q 023191 203 ASA-YARLYDYERIRKVC---NKQKAIMLADMAHISGLVAAGVIPSPF---E--YADVVTTTTHKSLR--GPRGAMIFFR 271 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia---~~~~~~vivD~a~~~g~~~~~~~~~~~---~--~~D~v~~s~~K~l~--gp~gG~l~~~ 271 (286)
|+| +|...+.+++.+++ ++++ ++|+|++++ .....+.....+ . ..-+++.|++|.|+ |.+-|+++++
T Consensus 160 P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~ 237 (366)
T PRK01533 160 PNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYY-EYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGH 237 (366)
T ss_pred CCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHH-HhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCC
Confidence 766 77777766555554 4555 677899975 333211111111 1 13478999999874 4555999998
Q ss_pred cchhhhhcc
Q 023191 272 KGVKEINKQ 280 (286)
Q Consensus 272 ~~~~~~~~~ 280 (286)
.++.+..++
T Consensus 238 ~~~~~~l~~ 246 (366)
T PRK01533 238 EELIEKLNV 246 (366)
T ss_pred HHHHHHHHH
Confidence 877765553
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=159.78 Aligned_cols=208 Identities=17% Similarity=0.184 Sum_probs=141.3
Q ss_pred HcCceecCCCCC---CC----HHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe
Q 023191 46 WKGLELIPSENF---TS----VSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS 118 (286)
Q Consensus 46 ~~~i~L~~~e~~---~~----~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~ 118 (286)
.+.++|..++.+ .+ ..+.+++..++... ...|+++.+..+|| +.+++++|.+. +++
T Consensus 11 ~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~g-------d~~Y~~~~g~~~Le----eaia~~~g~~~------vv~ 73 (431)
T cd00617 11 YNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLG-------DEAYAGSKSFYDLE----DAVQDLFGFKH------IIP 73 (431)
T ss_pred CCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhC-------CCccCCCCCHHHHH----HHHHHHHCCCe------EEE
Confidence 356777777662 12 24444444444331 11256667888888 55566677764 777
Q ss_pred CCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-------CCCCCCHHHHHHH
Q 023191 119 LSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-------STGYIDYDQLEKS 190 (286)
Q Consensus 119 ~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-------~~~~~d~e~l~~~ 190 (286)
++|++ ++.++++++++|||+| +++ |.|..+...+...|..++.++++... ..+.+|+++|++.
T Consensus 74 t~~Gt~Al~la~~al~~pGD~V-~~~--------~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~ 144 (431)
T cd00617 74 THQGRGAENILFSILLKPGRTV-PSN--------MHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKL 144 (431)
T ss_pred cCCHHHHHHHHHHHhCCCCCEE-ccC--------CcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHH
Confidence 77777 8888999999999987 466 44444444566778777666543211 1245999999999
Q ss_pred hhhc---CCcEEEEc-CCC-C-CCcc---CHHHHHHHHHhcCCEEEEeccccccccc------cCCCCCC--------CC
Q 023191 191 ATLF---RPKLIVAG-ASA-Y-ARLY---DYERIRKVCNKQKAIMLADMAHISGLVA------AGVIPSP--------FE 247 (286)
Q Consensus 191 i~~~---~tk~v~i~-~~n-~-g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~------~~~~~~~--------~~ 247 (286)
+++. ++++|+++ ++| + |... ++++|.++|++||++||.|+||..+... .+..... +.
T Consensus 145 I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s 224 (431)
T cd00617 145 IDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFS 224 (431)
T ss_pred hCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhc
Confidence 9862 37888887 666 4 5554 4668899999999999999998765221 1111111 12
Q ss_pred cceEEEeCCCCCCCCCCceEEEEecc-hhhhhc
Q 023191 248 YADVVTTTTHKSLRGPRGAMIFFRKG-VKEINK 279 (286)
Q Consensus 248 ~~D~v~~s~~K~l~gp~gG~l~~~~~-~~~~~~ 279 (286)
++|.+++|++|.+.+|.||+++++++ +....+
T Consensus 225 ~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~ 257 (431)
T cd00617 225 YADGCTMSAKKDGLVNIGGFLALRDDELYEEAR 257 (431)
T ss_pred cCCEEEEEeecCCCCccceEEEeCcHHHHHHHH
Confidence 58999999999999999999999984 655444
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-19 Score=157.71 Aligned_cols=204 Identities=13% Similarity=0.097 Sum_probs=140.1
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +|+.+.+++.+.+... .+|+. .+..+|+ +.++++++++++ +|++|+|++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~-------~~~~~lr----~~ia~~~~~~~~----~I~it~G~~~ 93 (357)
T PRK14809 31 DLVKLSSNENPHGPSPAAVEAIREAAERV--HSYPK-------ASHADLT----AALADRWDVSPE----QVWLANGGDG 93 (357)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhh--hcCCC-------CCHHHHH----HHHHHHhCCCcc----eEEECCCHHH
Confidence 57999998884 6888888887765431 13332 2344555 555666688775 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..+++++++|||.|++++ |.|..+...+...|..++.++++.+ +++.+|++++++.. + ++|+|+++
T Consensus 94 al~~~~~~~~~~gd~V~v~~--------P~y~~~~~~~~~~g~~~~~~~l~~~-~~~~~~~~~~~~~~-~-~~k~i~l~~ 162 (357)
T PRK14809 94 ALDYLARAMLDPGDTVLVPD--------PGFAYYGMSARYHHGEVREYPVSKA-DDFEQTADTVLDAY-D-GERIVYLTS 162 (357)
T ss_pred HHHHHHHHhcCCCCEEEEeC--------CChHHHHHHHHHcCCeEEEEecccC-cCCCcCHHHHHHhh-c-CCcEEEEeC
Confidence 87778899999999999999 5544444344566766766765432 45788888887765 3 68999998
Q ss_pred CCC-CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCCC--CCCceEEEEecchh
Q 023191 203 ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLR--GPRGAMIFFRKGVK 275 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l~--gp~gG~l~~~~~~~ 275 (286)
|+| +|...+.+++.++++.. ++++|+|+++.. ..........+. ..-+++.|++|.|+ |.+-|++++++++.
T Consensus 163 p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~-~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~ 241 (357)
T PRK14809 163 PHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGE-FAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWA 241 (357)
T ss_pred CCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhh-ccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHH
Confidence 666 77888877777776653 789999999653 221110000011 12367899999885 55669999998776
Q ss_pred hhhc
Q 023191 276 EINK 279 (286)
Q Consensus 276 ~~~~ 279 (286)
+..+
T Consensus 242 ~~~~ 245 (357)
T PRK14809 242 DAYA 245 (357)
T ss_pred HHHH
Confidence 5554
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=155.14 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=134.1
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--- 133 (286)
+.+.+.+++..++.... +.++ .|. +..++++.+++++++++|++.+ ++++++|++ ++..++.++.
T Consensus 32 ~~~~~~~a~~~~~~~~~--~~~~--~~~---~~~~~~~~~~~~la~~~g~~~~----~~~~~~g~~~~~~~~~~~~~~~~ 100 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNL--GDPG--LFP---GTKKIEEEVVGSLGNLLHLPDA----YGYIVSGGTEANIQAVRAAKNLA 100 (373)
T ss_pred chHHHHHHHHHHhhcCC--CCcc--cCc---cHHHHHHHHHHHHHHHhCCCCC----CeEEeccHHHHHHHHHHHHHHHH
Confidence 44555777766654321 2222 122 3456677889999999999764 367777777 7665665553
Q ss_pred ---CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCc-EEEEcCCC-CCC
Q 023191 134 ---KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK-LIVAGASA-YAR 208 (286)
Q Consensus 134 ---~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk-~v~i~~~n-~g~ 208 (286)
.+||+|+++++.|.++. ..+...|.+++.+++ + +++.+|++++++.+.+ +++ +++++++| +|.
T Consensus 101 ~~~~~g~~vl~~~~~h~~~~--------~~~~~~G~~~~~v~~--~-~~~~~d~~~l~~~l~~-~~~~vv~~~~~~~tG~ 168 (373)
T TIGR03812 101 REEKRTPNIIVPESAHFSFE--------KAAEMLGLELRYAPL--D-EDYTVDVKDVEDLIDD-NTIGIVGIAGTTELGQ 168 (373)
T ss_pred hccCCCcEEEECCcchHHHH--------HHHHHcCCeEEEEee--C-CCCCcCHHHHHHHHhh-CcEEEEEECCCCCCCc
Confidence 47899999996665532 244566776766653 4 4678999999999987 664 45555555 788
Q ss_pred ccCHHHHHHHHHhcCCEEEEeccccccccccC---CC--C--CCCCcceEEEeCCCCCCCCCCc-e-EEEEecchhhhh
Q 023191 209 LYDYERIRKVCNKQKAIMLADMAHISGLVAAG---VI--P--SPFEYADVVTTTTHKSLRGPRG-A-MIFFRKGVKEIN 278 (286)
Q Consensus 209 ~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~---~~--~--~~~~~~D~v~~s~~K~l~gp~g-G-~l~~~~~~~~~~ 278 (286)
..|+++|.++|+++|+++++|+||+.+..... .. . ....++|++++++|||+.+|.+ | +++.++++.+..
T Consensus 169 ~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l 247 (373)
T TIGR03812 169 IDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYL 247 (373)
T ss_pred cCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhh
Confidence 89999999999999999999999986654311 11 1 1112589999999998766644 5 444555655443
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-19 Score=172.52 Aligned_cols=171 Identities=15% Similarity=0.080 Sum_probs=134.5
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-----HHHHHHHHhcCC-CC----eEEeccCCCCcccCccccc
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-----SNFQVYTALLKP-HD----RIMALDLPHGGHLSHGYQT 156 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-----a~~~~l~a~~~~-Gd----~Vl~~~~~~~~~~~~~~~~ 156 (286)
.++..++-..+++++++++|.+. |.++.+++ ++..+++++.++ || +|+++..+|+++..++.
T Consensus 563 ~~g~~~~~~~~r~~la~i~g~~~------v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~-- 634 (993)
T PLN02414 563 AQGYQEMFEDLGDLLCEITGFDS------FSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA-- 634 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCe------EEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH--
Confidence 35667777889999999999954 66666555 666688888866 88 89999999999987654
Q ss_pred cccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh--cCCcEEEEc-CCCCC-CccCHHHHHHHHHhcCCEEEEeccc
Q 023191 157 DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASAYA-RLYDYERIRKVCNKQKAIMLADMAH 232 (286)
Q Consensus 157 ~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v~i~-~~n~g-~~~~l~~I~~ia~~~~~~vivD~a~ 232 (286)
+.|.+++.++ .+ +++.+|+++|++++++ .+|++|+++ ++|.+ ...|+++|+++||++|+++++|+||
T Consensus 635 ------~~G~~vv~v~--~d-~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq 705 (993)
T PLN02414 635 ------MCGMKIVVVG--TD-AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGAN 705 (993)
T ss_pred ------HCCCEEEEec--cC-CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecC
Confidence 4576676676 44 5689999999999985 267888887 77765 6778999999999999999999999
Q ss_pred cccccccCC-CCCCCCcceEEEeCCCCCCCCCC-----c-eEEEEecchhhh
Q 023191 233 ISGLVAAGV-IPSPFEYADVVTTTTHKSLRGPR-----G-AMIFFRKGVKEI 277 (286)
Q Consensus 233 ~~g~~~~~~-~~~~~~~~D~v~~s~~K~l~gp~-----g-G~l~~~~~~~~~ 277 (286)
..+...... ... ++|++++|+||||++|. | |++++++.+...
T Consensus 706 ~~a~~~l~~p~~~---GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~ 754 (993)
T PLN02414 706 MNAQVGLTSPGFI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF 754 (993)
T ss_pred HHhccCcCCcccc---CCCEEEecCCccCCcCcccCCCCeeeEEEchhhccc
Confidence 887644222 122 59999999999997554 4 999999876644
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-19 Score=156.80 Aligned_cols=186 Identities=19% Similarity=0.183 Sum_probs=131.5
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHD 137 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd 137 (286)
.|.++++..+.+.. | + +..++.+.+++.+++++|++++ ++++++|+. ++..++.++++|||
T Consensus 35 ~~~~~~~~~~~~~~-~--~-----------g~~~~~~~Le~~lA~~~g~~~e----~ilv~~gg~~a~~~~~~al~~~gd 96 (346)
T TIGR03576 35 GFKIDEEDLELLET-Y--V-----------GPAIFEEKVQELGREHLGGPEE----KILVFNRTSSAILATILALEPPGR 96 (346)
T ss_pred ChhHHHHHHHHHHH-h--c-----------CCHHHHHHHHHHHHHHcCCCcc----eEEEECCHHHHHHHHHHHhCCCCC
Confidence 68888888777755 3 1 1125556677999999999765 488888888 99989999999999
Q ss_pred eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCCCc---cCHH
Q 023191 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARL---YDYE 213 (286)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n~g~~---~~l~ 213 (286)
+|+++.++.+ .|..+..++.+.|.++ +. . .|+++++. .+ ++++|+++ .++.|.+ .+++
T Consensus 97 ~Vli~~~d~p-----~~~s~~~~~~l~ga~~--~~--~------~~l~~l~~--~~-~~~lIiitg~s~~G~v~~~~~L~ 158 (346)
T TIGR03576 97 KVVHYLPEKP-----AHPSIPRSCKLAGAEY--FE--S------DELSELKK--ID-GTSLVVITGSTMDLKVVSEEDLK 158 (346)
T ss_pred EEEECCCCCC-----CchhHHHHHHHcCCEE--ec--c------CCHHHHhh--Cc-CceEEEEECCCCCCcccCHHHHH
Confidence 9998644333 2333333555666543 21 1 24555432 23 68888887 4446654 6899
Q ss_pred HHHHHHHhcCCEEEEecccccccccc-CCCCCCCCcceEEEeCCCCCCCCCCceEEEEecchhhhhcc
Q 023191 214 RIRKVCNKQKAIMLADMAHISGLVAA-GVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 214 ~I~~ia~~~~~~vivD~a~~~g~~~~-~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~ 280 (286)
+|+++|+++|++|++|+||+.|.... +.....-.++|+++.|++|+++|+++|++++++++.+.+++
T Consensus 159 ~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r~G~v~~~~~li~~l~~ 226 (346)
T TIGR03576 159 RVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPRGGLLAGRKELVDKIKS 226 (346)
T ss_pred HHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccceEEEEeCHHHHHHHHH
Confidence 99999999999999999998765421 11110001478999999999999999999999998877764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=156.21 Aligned_cols=223 Identities=13% Similarity=0.037 Sum_probs=148.8
Q ss_pred ccccccccChHHHHHHHHHHHHH-HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 23 LNAPLEVVDPEIADIIEHEKARQ-WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
+++++...+.+.+..+....... .+.++|..+++. .++.+++++.+..... + |+...+..++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~---~------Y~~~~G~~~lr~~ia~ 73 (364)
T PRK07865 3 VSARLPDFPWDTLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAADAP---G------YPTTAGTPELREAIVG 73 (364)
T ss_pred ccccCCCccHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHhhC---C------CCCccCCHHHHHHHHH
Confidence 45677777787777776554333 356899888763 3677788876544221 2 3444667899999999
Q ss_pred HHHHHCCCC-CCCcceeEEeCCChH-HHHHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 100 RALEAFRLD-PEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 100 ~~~~~~g~~-~~~~~~~v~~~sG~~-a~~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
++.+.+|.+ .+. .+|++|+|++ ++..++.++ +++||.|++++|.|+. +...+...|.++..+ +
T Consensus 74 ~l~~~~~~~~~~~--~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~--------~~~~~~~~g~~~~~~--~-- 139 (364)
T PRK07865 74 WLARRRGVTGLDP--AAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPT--------YEVGARLAGATVVRA--D-- 139 (364)
T ss_pred HHHHHcCCCCCCc--ccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCccc--------HHHHHHhcCCEEEec--C--
Confidence 999888754 322 3699999999 776566777 7999999999955544 333445566544322 1
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC-----
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF----- 246 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~----- 246 (286)
++++++. . ++++|+++ ++| +|...+ +++|.++|+++|+++|+|+++..- ...+.....+
T Consensus 140 ------~~~~l~~---~-~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~ 208 (364)
T PRK07865 140 ------SLTELGP---Q-RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLEL-GWDAEPVSILDPRVC 208 (364)
T ss_pred ------ChhhCCc---c-cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhh-ccCCCCCcccccccc
Confidence 2233322 3 78999997 666 675554 678889999999999999997632 2111111101
Q ss_pred --C-cceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 247 --E-YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 247 --~-~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
. ...+++.|++|.|+ |.+.|++++++++.+..+
T Consensus 209 ~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~ 246 (364)
T PRK07865 209 GGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELL 246 (364)
T ss_pred CCccceEEEEeechhccCCCceeeEEEecCHHHHHHHH
Confidence 0 13488999999874 566799999887665544
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=157.23 Aligned_cols=211 Identities=10% Similarity=0.028 Sum_probs=146.1
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCC-CCCCCCCcccCCcchHHHHHHHHHHHHHHHCC----CCCCCcceeEEeC
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKY-SEGYPGARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNVQSL 119 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~~~~~v~~~ 119 (286)
+.++|+.|+++ +|+.+++++.+.+.... ..+| +. .+..+|++++.+++.+.++ ++++ +|++|
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y------~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~----~I~it 97 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRY------PD-GGHEALKQAIAEYVNESAAGSSQITPA----NISVG 97 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCC------CC-CchHHHHHHHHHHhCccccccCCCCHH----HEEEc
Confidence 46889989885 68899999987665421 1122 22 4567888888888876653 5553 59999
Q ss_pred CChH-HHHHHHHHhcCCCC-eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh---c
Q 023191 120 SGSP-SNFQVYTALLKPHD-RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---F 194 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~ 194 (286)
+|++ ++..++.+++.+|| .|++++ |+|..|...+...|.+++.++ .+.+++.+|++++++++.+ .
T Consensus 98 ~Ga~~al~~~~~~~~~~g~~~Vlv~~--------P~y~~~~~~~~~~g~~~~~~~--~~~~~~~~d~~~l~~~~~~~~~~ 167 (374)
T PRK02610 98 NGSDELIRSLLIATCLGGEGSILVAE--------PTFSMYGILAQTLGIPVVRVG--RDPETFEIDLAAAQSAIEQTQNP 167 (374)
T ss_pred CChHHHHHHHHHHHcCCCCCeEEEcC--------CChHHHHHHHHHcCCEEEEec--CCcccCCCCHHHHHHHHHhhcCC
Confidence 9999 77667788888886 899999 666555556677787665554 4544689999999998874 4
Q ss_pred CCcEEEEc-CCC-CCCccCHHHHHHHHH-hcCCEEEEeccccccccccCCCCCCCCc--ceEEEeCCCCCC--CCCCceE
Q 023191 195 RPKLIVAG-ASA-YARLYDYERIRKVCN-KQKAIMLADMAHISGLVAAGVIPSPFEY--ADVVTTTTHKSL--RGPRGAM 267 (286)
Q Consensus 195 ~tk~v~i~-~~n-~g~~~~l~~I~~ia~-~~~~~vivD~a~~~g~~~~~~~~~~~~~--~D~v~~s~~K~l--~gp~gG~ 267 (286)
++|+|+++ |+| +|...+.+++.++++ .+++++|+|+++.. ...... ...+.. .-+++.|++|+| .|.|-|+
T Consensus 168 ~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~-~~~~~~-~~~~~~~~~~ivi~SfSK~~g~~GlRiG~ 245 (374)
T PRK02610 168 PVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFE-FSQTTL-VGELAQHPNWVILRTFSKAFRLAAHRVGY 245 (374)
T ss_pred CceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccc-cCccch-HHHHhcCCCEEEEEecchhccCcccceee
Confidence 89999997 666 777777666555543 14899999999642 111000 001111 236789999987 4556699
Q ss_pred EEEecchhhhhcc
Q 023191 268 IFFRKGVKEINKQ 280 (286)
Q Consensus 268 l~~~~~~~~~~~~ 280 (286)
+++++++.+..++
T Consensus 246 ~v~~~~l~~~l~~ 258 (374)
T PRK02610 246 AIGHPELIAVLEK 258 (374)
T ss_pred eecCHHHHHHHHH
Confidence 9998887766554
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=154.44 Aligned_cols=207 Identities=21% Similarity=0.248 Sum_probs=157.9
Q ss_pred cCceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcc-cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
+.+||..++= .-.|.+++++.+.+.. |..|..+.+. .+..+...+|| +.+++++|.+. .++++||-
T Consensus 40 ~~~nf~SNdYLGLa~~~~~~~a~~~~~~~-~g~g~~gsR~i~G~~~~h~~LE----~~lA~f~g~e~-----al~f~SGy 109 (388)
T COG0156 40 KVLNFCSNDYLGLASHPELIEAAKAAIRR-YGVGAGGSRLISGTSDLHVELE----EELADFLGAEA-----ALLFSSGF 109 (388)
T ss_pred eeEeeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCcCcccCCcHHHHHHH----HHHHHHhCCCc-----EEEEcccc
Confidence 4577764443 1378899999998876 4345555553 44445556677 88888999875 59999999
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--C---Cc
Q 023191 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--R---PK 197 (286)
Q Consensus 123 ~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~---tk 197 (286)
.+|..++.++++++|.|+.....|.+... ++.+.+.+.+.. .. .|+++|++++.+. . .+
T Consensus 110 ~AN~~~i~~l~~~~dli~~D~lnHASiid--------G~rls~a~~~~f--~H------nD~~~Le~~l~~~~~~~~~~~ 173 (388)
T COG0156 110 VANLGLLSALLKKGDLIFSDELNHASIID--------GIRLSRAEVRRF--KH------NDLDHLEALLEEARENGARRK 173 (388)
T ss_pred hhHHHHHHHhcCCCcEEEEechhhhhHHH--------HHHhCCCcEEEe--cC------CCHHHHHHHHHhhhccCCCce
Confidence 99999999999999999999988888654 555666554333 22 4889999999762 1 35
Q ss_pred EEEEc--CCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccC---CC-CCCCC--cceEEEeCCCCCCCCCCceEEE
Q 023191 198 LIVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG---VI-PSPFE--YADVVTTTTHKSLRGPRGAMIF 269 (286)
Q Consensus 198 ~v~i~--~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~---~~-~~~~~--~~D~v~~s~~K~l~gp~gG~l~ 269 (286)
+|++. +|+.|.+.|+++|.+++++|++++++|+||+.|.+... .. ..++. .+|++++++.|.|+ -.||++.
T Consensus 174 ~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~Gg~v~ 252 (388)
T COG0156 174 LIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSGGYIA 252 (388)
T ss_pred EEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccCceee
Confidence 56654 89999999999999999999999999999999988631 11 11222 26899999999996 5789999
Q ss_pred Eecchhhhhcc
Q 023191 270 FRKGVKEINKQ 280 (286)
Q Consensus 270 ~~~~~~~~~~~ 280 (286)
++..+.|+++.
T Consensus 253 g~~~~~d~L~~ 263 (388)
T COG0156 253 GSAALIDYLRN 263 (388)
T ss_pred CcHHHHHHHHH
Confidence 99999999884
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=158.10 Aligned_cols=219 Identities=12% Similarity=0.079 Sum_probs=147.3
Q ss_pred cCceecCCCCCC-CHHHHHHhcccccc-C----CCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC----CCCCCcceeE
Q 023191 47 KGLELIPSENFT-SVSVMQAVGSVMTN-K----YSEGYPGARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNV 116 (286)
Q Consensus 47 ~~i~L~~~e~~~-~~~v~~a~~~~l~~-~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~~~~~v 116 (286)
+.|+|...||.+ .+.+.+.+.+...- . +........+|.+..+...|++++.+++.+++| ++++ +|
T Consensus 48 g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~----~I 123 (447)
T PLN02607 48 GVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPD----RI 123 (447)
T ss_pred ceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHH----He
Confidence 469999999964 56666666553321 0 000111223466677889999999999998877 3553 69
Q ss_pred EeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccc-cceeeeEEEecccCC-CCCCCCHHHHHHHhhh
Q 023191 117 QSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS-AVSIFFETMPYRLNE-STGYIDYDQLEKSATL 193 (286)
Q Consensus 117 ~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~ 193 (286)
++|+|++ ++.+++.++++|||.|+++.|.|+++.. .+. ..|.+++.+ +.+. +++.+|++++++++.+
T Consensus 124 vit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~--------~~~~~~g~~vv~v--~~~~~~~f~~~~~~le~a~~~ 193 (447)
T PLN02607 124 VLTAGATAANELLTFILADPGDALLVPTPYYPGFDR--------DLRWRTGVKIVPI--HCDSSNNFQVTPQALEAAYQE 193 (447)
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHH--------HHHhcCCcEEEEE--eCCCCCCCcCCHHHHHHHHHH
Confidence 9999999 8877888899999999999966555432 222 245444444 4442 4568999999998864
Q ss_pred -----cCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC-----------CCCcceEE
Q 023191 194 -----FRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-----------PFEYADVV 252 (286)
Q Consensus 194 -----~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~-----------~~~~~D~v 252 (286)
.++|+|+++ |+| +|.+.+ +++|.++|++|++.+|+|++++........... .....-++
T Consensus 194 a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~v 273 (447)
T PLN02607 194 AEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHI 273 (447)
T ss_pred HHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEE
Confidence 378899887 777 776665 778899999999999999996543222111110 00112266
Q ss_pred EeCCCCCCC--CCCceEEEE-ecchhhhhc
Q 023191 253 TTTTHKSLR--GPRGAMIFF-RKGVKEINK 279 (286)
Q Consensus 253 ~~s~~K~l~--gp~gG~l~~-~~~~~~~~~ 279 (286)
+.|++|.|+ |-|-|+++. ++++....+
T Consensus 274 i~s~SK~fg~~GlRvG~ivs~n~~l~~~~~ 303 (447)
T PLN02607 274 VYSLSKDLGLPGFRVGTIYSYNDKVVTTAR 303 (447)
T ss_pred EEcchhcCCCCcceEEEEEEcCHHHHHHHH
Confidence 899999874 445599998 455655443
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-19 Score=157.49 Aligned_cols=199 Identities=19% Similarity=0.197 Sum_probs=140.7
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +++.+++++.+.+.+.. ..|+. . +..+++ +.++++++++++ +|++|+|++
T Consensus 25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-~~y~~------~-~~~~lr----~aia~~~~~~~~----~I~it~G~~~ 88 (353)
T PRK05387 25 KLIKLNTNENPYPPSPKVLEAIRAALGDDL-RLYPD------P-NADALR----QAIAAYYGLDPE----QVFVGNGSDE 88 (353)
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHhhhhh-hcCCC------C-cHHHHH----HHHHHHhCCCHH----HEEEcCCHHH
Confidence 56899998884 47889999987665311 12322 1 224455 667777788775 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.++++++++|||+|++++ |.|+.+...+...|.+++.++ .+ +++.+|++++++ ++++|+++
T Consensus 89 al~~~~~~l~~~gd~vlv~~--------P~y~~~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~-----~~~~v~~~~ 152 (353)
T PRK05387 89 VLAHAFLAFFNHDRPLLFPD--------ITYSFYPVYAGLYGIPYEEIP--LD-DDFSIDVEDYLR-----PNGGIIFPN 152 (353)
T ss_pred HHHHHHHHhcCCCCEEEEeC--------CCHHHHHHHHHHcCCEEEEee--cC-CCCCCCHHHHHh-----cCCEEEEeC
Confidence 88878999999999999999 555444444556776666565 44 467899998863 45777776
Q ss_pred CCC-CCCccCHHHHHHHHHhc-CCEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCC--CCCCceEEEEecchhh
Q 023191 203 ASA-YARLYDYERIRKVCNKQ-KAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSL--RGPRGAMIFFRKGVKE 276 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~-~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~ 276 (286)
|+| +|...+.+++.++++++ ++++|+|++|.. . .......... ...+++.|++|.| .|.+.|+++.+.++.+
T Consensus 153 P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~-~-~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~ 230 (353)
T PRK05387 153 PNAPTGIALPLAEIERILAANPDSVVVIDEAYVD-F-GGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIE 230 (353)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccc-c-CCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHH
Confidence 777 78899999999999876 999999999741 1 1110000001 2458899999986 4666699999888776
Q ss_pred hhc
Q 023191 277 INK 279 (286)
Q Consensus 277 ~~~ 279 (286)
..+
T Consensus 231 ~l~ 233 (353)
T PRK05387 231 ALN 233 (353)
T ss_pred HHH
Confidence 554
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-18 Score=155.01 Aligned_cols=225 Identities=14% Similarity=0.114 Sum_probs=146.1
Q ss_pred cccChHHHHHHHHHHHH--HHcCceecCCC---C--CCC--HHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHH
Q 023191 28 EVVDPEIADIIEHEKAR--QWKGLELIPSE---N--FTS--VSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (286)
Q Consensus 28 ~~~~~~~~~~~~~~~~~--~~~~i~L~~~e---~--~~~--~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (286)
...+++.+..+....+. ..+.++|..|. + .+| +.+.+++.+.+.... ...|+...+..++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~------~~~Y~~~~G~~~lR~aia 79 (396)
T PRK09257 6 EAAPADPILGLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETET------TKNYLPIEGLAAYRQAVQ 79 (396)
T ss_pred CCCCCChHHHHHHHHhhCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhccccc------CCCcCCCCCCHHHHHHHH
Confidence 34444444444443332 23678998874 2 223 678888777654321 112566678899999999
Q ss_pred HHHHHHCCC--CCCCcceeEEeCCChH-HHHHHHHHh--cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 99 KRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 99 ~~~~~~~g~--~~~~~~~~v~~~sG~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
+++.+..+. ++++ .+|++|+|++ ++.++++++ ++|||+|++++ |+|+.|...+...|.+++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~--i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~--------P~y~~~~~~~~~~g~~~v~v~~ 149 (396)
T PRK09257 80 ELLFGADSPALAAGR--VATVQTPGGTGALRVGADFLKRAFPDAKVWVSD--------PTWPNHRAIFEAAGLEVKTYPY 149 (396)
T ss_pred HHhcCCCCcccccCe--EEEEecCCccHHHHHHHHHHHHhCCCCeEEECC--------CCcccHHHHHHHcCCcEEEEec
Confidence 998766543 4432 1239999999 777676555 58999999999 6666555566778877766664
Q ss_pred ccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccccccc-CCCCCC
Q 023191 174 RLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA-GVIPSP 245 (286)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~-~~~~~~ 245 (286)
. +.+++.+|++++++.+... ++++++++ ++| +|...+ +++|+++|++|++++|+|+++. ..... +.....
T Consensus 150 ~-~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~~ 227 (396)
T PRK09257 150 Y-DAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQ-GFGDGLEEDAYG 227 (396)
T ss_pred c-ccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc-ccccchHHHHHH
Confidence 2 3345789999999988642 34445556 666 775544 7788999999999999999954 22211 000000
Q ss_pred ---CC---cceEEEeCCCCCCC--CCCceEEEE
Q 023191 246 ---FE---YADVVTTTTHKSLR--GPRGAMIFF 270 (286)
Q Consensus 246 ---~~---~~D~v~~s~~K~l~--gp~gG~l~~ 270 (286)
+. ..-+++.|++|+|+ |.|-|++++
T Consensus 228 ~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~ 260 (396)
T PRK09257 228 LRAFAAAGLELLVASSFSKNFGLYGERVGALSV 260 (396)
T ss_pred HHHHHhcCCcEEEEEEcCCcCccccccceeEEE
Confidence 00 12377999999885 666699874
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=155.32 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=132.6
Q ss_pred CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-cC
Q 023191 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LK 134 (286)
Q Consensus 57 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~-~~ 134 (286)
..+++.++++.+.+.+.+. ++.. .+++++.+++++++|.+. +++++|++ ++.+++.++ ++
T Consensus 8 ~~~~~~~~~~~~~l~~~~~--------~g~~----~~~~~~e~~la~~~g~~~------~v~~~sgt~al~~~l~~~~~~ 69 (375)
T PRK11706 8 PVVGTELDYIQQAMSSGKL--------CGDG----GFTRRCQQWLEQRFGSAK------VLLTPSCTAALEMAALLLDIQ 69 (375)
T ss_pred CCCHHHHHHHHHHHHcCCc--------cCCC----HHHHHHHHHHHHHhCCCe------EEEECCHHHHHHHHHHHhCCC
Confidence 3456667778777765321 1111 334455578888888753 77777777 765566655 79
Q ss_pred CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHH
Q 023191 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYER 214 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~ 214 (286)
|||+|+++.+.|.++.. .+...|.+++.+ +++++++.+|++++++++++ +||+|+++ +.+|...++++
T Consensus 70 ~Gd~Viv~~~t~~~~~~--------~~~~~G~~~v~~--d~d~~~~~~d~~~le~~i~~-~tk~i~~~-~~~G~~~~~~~ 137 (375)
T PRK11706 70 PGDEVIMPSYTFVSTAN--------AFVLRGAKIVFV--DIRPDTMNIDETLIEAAITP-KTRAIVPV-HYAGVACEMDT 137 (375)
T ss_pred CCCEEEECCCCcHHHHH--------HHHHcCCEEEEE--ecCCCcCCcCHHHHHHhcCC-CCeEEEEe-CCCCCccCHHH
Confidence 99999999966665543 344667655544 46655678999999999988 89999875 23788889999
Q ss_pred HHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCC--CCCCCCCceEEEEec-chh
Q 023191 215 IRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH--KSLRGPRGAMIFFRK-GVK 275 (286)
Q Consensus 215 I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~--K~l~gp~gG~l~~~~-~~~ 275 (286)
|.++|+++|++||+|++|+.|....+.... ...|+.++|+| |.++.+.||++++++ ++.
T Consensus 138 i~~la~~~~i~vIeD~a~a~g~~~~~~~~g--~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~ 199 (375)
T PRK11706 138 IMALAKKHNLFVVEDAAQGVMSTYKGRALG--TIGHIGCFSFHETKNYTAGEGGALLINDPALI 199 (375)
T ss_pred HHHHHHHcCCEEEEECccccccccCCeeee--cCcCEEEEeCCCCccccccCCeEEEECCHHHH
Confidence 999999999999999999988743222111 13688888888 999766667777765 344
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=161.18 Aligned_cols=205 Identities=16% Similarity=0.190 Sum_probs=134.7
Q ss_pred cCceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC---CCCCcceeEEeCCCh
Q 023191 47 KGLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL---DPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~---~~~~~~~~v~~~sG~ 122 (286)
+.++|..+++ +.+++.+.++.+.+... +|+ .+.......++.+.+++++.++. +.++ .+|++|+|+
T Consensus 95 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~---~Y~-----~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~--~~V~it~Ga 164 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFLYEMCDGIIGD---NYP-----VPDRMLPHSEKIVHQYLIQEMCGNKPPPGE--FDLFAVEGG 164 (521)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHhhcC---CCC-----CCCCCHHHHHHHHHHHHHhhccCCCCCCCc--CeEEEeCCH
Confidence 4588888877 34555566666654221 222 12223444555555676666443 2221 269999999
Q ss_pred H-HHHHHHHH-----hcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-CC-----CCCCHHHHHHH
Q 023191 123 P-SNFQVYTA-----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-ST-----GYIDYDQLEKS 190 (286)
Q Consensus 123 ~-a~~~~l~a-----~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~-----~~~d~e~l~~~ 190 (286)
+ ++..++.+ +++|||+|++++ |.|+.|...+.+.+...++++++.+. ++ |.+|+++++++
T Consensus 165 t~al~~~~~~l~~~~ll~pGD~Vlv~~--------P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~ 236 (521)
T TIGR03801 165 TAAMCYIFDSLKANELLKKGDKIALMT--------PIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKL 236 (521)
T ss_pred HHHHHHHHHHHhHhhcCCCCCEEEEeC--------CCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHh
Confidence 9 77767776 789999999999 55555554445553334445444432 12 88999999998
Q ss_pred hhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhc--CCEEEEeccccccccccCCCCCCC---CcceEEEeCCCCCC
Q 023191 191 ATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPF---EYADVVTTTTHKSL 260 (286)
Q Consensus 191 i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~---~~~D~v~~s~~K~l 260 (286)
+++ ++|+|+++ |+| +|...+ +++|+++|++| +++||+|+++.. ... .. ...+ ...-+++.|++|+|
T Consensus 237 ~~~-~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~-f~~-~~-~sl~~~~~~~vI~v~SfSK~f 312 (521)
T TIGR03801 237 RDP-SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGT-FVD-DF-RSLFAELPYNTIGVYSFSKYF 312 (521)
T ss_pred cCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchh-hcc-cc-cchhhhCCCCEEEEEcchhhc
Confidence 876 99999986 777 776655 77888899987 999999999652 221 11 1111 11347899999987
Q ss_pred --CCCCceEEEEecc
Q 023191 261 --RGPRGAMIFFRKG 273 (286)
Q Consensus 261 --~gp~gG~l~~~~~ 273 (286)
.|++-|+++.+++
T Consensus 313 g~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 313 GATGWRLGTIALHKD 327 (521)
T ss_pred cCchhhhhhhhcCch
Confidence 6777799999764
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=157.75 Aligned_cols=166 Identities=14% Similarity=0.168 Sum_probs=123.3
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
.....+|| +.+++++|.+. .+++.+|+.++.+++.++++|||+|+++++.|++++... ...+...|.
T Consensus 63 ~p~~~~Le----~~iA~~~g~~~-----~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~----~~~~~~~G~ 129 (400)
T PRK06234 63 NPTSTEVE----NKLALLEGGEA-----AVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALL----NHGLTRYGV 129 (400)
T ss_pred CccHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHH----HHHHhhCCe
Confidence 34566666 77777778653 366667777877788899999999999997776554321 112334565
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVI 242 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~ 242 (286)
+++.+ +. .|++++++++++ +||+|+++ |+| +|...|+++|.++|+++ ++++++|++++.+...
T Consensus 130 ~v~~v--d~------~d~e~l~~~i~~-~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~---- 196 (400)
T PRK06234 130 EVTFV--DT------SNLEEVRNALKA-NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQ---- 196 (400)
T ss_pred EEEEE--CC------CCHHHHHHHhcc-CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcC----
Confidence 45444 22 279999999987 89999997 777 77889999999999997 9999999998766442
Q ss_pred CCCCC-cceEEEeCCCCCCCCCC---ceEEEEecchhhhhc
Q 023191 243 PSPFE-YADVVTTTTHKSLRGPR---GAMIFFRKGVKEINK 279 (286)
Q Consensus 243 ~~~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~~~~ 279 (286)
.++. ++|++++|++|+++|+. ||++++++++.+.++
T Consensus 197 -~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~ 236 (400)
T PRK06234 197 -RPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVK 236 (400)
T ss_pred -CchhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHH
Confidence 1222 59999999999998765 599999887665443
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=156.64 Aligned_cols=200 Identities=18% Similarity=0.116 Sum_probs=140.2
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|+.++++ +|+.+++++.+.+.... .| +.. ...+|+ +.+++++|++++ +|++|+|++
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~--~Y------~~~-~~~~Lr----~aia~~~~v~~e----~I~it~Gs~ 105 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAALSG--RY------DLE-LEDDLR----TLFAAQEGLPAD----HVMAYAGSS 105 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHHhc--CC------CCc-hHHHHH----HHHHHHhCcChh----hEEEcCChH
Confidence 356889888884 68999999987654311 12 221 244555 566777899875 499999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++..++.+++++||+|++++ |.|..+...+...|.+++.++ .+ +++.+|++++++. .+ ++++++++
T Consensus 106 ~ai~~~~~~l~~~gd~Vli~~--------P~y~~~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~-~~-~~~~v~l~ 172 (370)
T PRK09105 106 EPLNYAVLAFTSPTAGLVTAD--------PTYEAGWRAADAQGAPVAKVP--LR-ADGAHDVKAMLAA-DP-NAGLIYIC 172 (370)
T ss_pred HHHHHHHHHHcCCCCEEEEeC--------CChHHHHHHHHHcCCeEEEec--CC-CCCCCCHHHHHhc-CC-CCCEEEEe
Confidence 88878899999999999999 444444445567777666665 44 4578999999876 44 78999987
Q ss_pred -CCC-CCCccCHHHHHHHHHh--cCCEEEEeccccccccccCCCCCCCC----cce-EEEeCCCCCCC--CCCceEEEEe
Q 023191 203 -ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPFE----YAD-VVTTTTHKSLR--GPRGAMIFFR 271 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~~~~~~~----~~D-~v~~s~~K~l~--gp~gG~l~~~ 271 (286)
|+| +|...+.++|.++++. +++++|+|+++. .... .+.... ..+ +++.|++|+|+ |.+-|+++++
T Consensus 173 nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~-~f~~---~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~ 248 (370)
T PRK09105 173 NPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYI-HFSD---APSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAAR 248 (370)
T ss_pred CCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchH-Hhcc---CcchHHHHhhCCCEEEEecccHhhcCCccceeeeecC
Confidence 766 7788888888777653 489999999973 2211 111111 133 66789999874 4455999998
Q ss_pred cchhhhhc
Q 023191 272 KGVKEINK 279 (286)
Q Consensus 272 ~~~~~~~~ 279 (286)
+++.+...
T Consensus 249 ~~~i~~l~ 256 (370)
T PRK09105 249 PDLLAKLA 256 (370)
T ss_pred HHHHHHHH
Confidence 87765544
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-18 Score=155.32 Aligned_cols=207 Identities=18% Similarity=0.157 Sum_probs=144.6
Q ss_pred cCceecCCCC--C-CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 47 KGLELIPSEN--F-TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~--~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
+.++|..++. . +++.+++++.+.+.. +...+. .|....+..++++++++++++++|.+. .+++++|++
T Consensus 34 ~~id~~~~~~~g~~~~~~~~~a~~~~~~~-~~~~~~---~~~~~~g~~~l~~~l~~~l~~~~g~~~-----~i~~~sG~~ 104 (385)
T TIGR01825 34 EVINLSSNNYLGFADHPRLKEAAAQAIQQ-YGVGAG---AVRTIAGTLRLHEELEEKLAKFKKTEA-----ALVFQSGFN 104 (385)
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHH-cCCCCC---ccCcccCCcHHHHHHHHHHHHHhCCCc-----EEEECcHHH
Confidence 5688887652 3 688999999887753 211111 123334556788888899999998643 599999988
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc---CCcEEE
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF---RPKLIV 200 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~---~tk~v~ 200 (286)
++..++.+++++||.|++.++.|+++.. .+.+.|..+..+ ..+|++++++.+.+. ++++|+
T Consensus 105 a~~~a~~~~~~~gd~vi~~~~~~~~~~~--------~~~~~g~~~~~~--------~~~d~~~l~~~l~~~~~~~~~~v~ 168 (385)
T TIGR01825 105 TNQGVLSALLRKGDIVLSDELNHASIID--------GLRLTKATKKIY--------KHADMDDLDRVLRENPSYGKKLIV 168 (385)
T ss_pred HHHHHHHHhCCCCCEEEEEccccHHHHH--------HHHhcCCceEEe--------CCCCHHHHHHHHHhhccCCCeEEE
Confidence 7777888899999999999876665532 223344333211 147888888877642 577887
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEecccccccccc-CC---CCCCC-CcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA-GV---IPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~-~~---~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
++ ..| +|...|+++|.++|++||+++|+|++|+.|.... +. ....+ ...|+++.|++|+|+ ..||+++.+++
T Consensus 169 ~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~gG~~~~~~~ 247 (385)
T TIGR01825 169 TDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIG-VVGGYAAGHKE 247 (385)
T ss_pred EecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhh-cCCCEEecCHH
Confidence 76 334 6788899999999999999999999997665431 10 00111 247899999999995 46799988887
Q ss_pred hhhhhc
Q 023191 274 VKEINK 279 (286)
Q Consensus 274 ~~~~~~ 279 (286)
+.+..+
T Consensus 248 ~~~~~~ 253 (385)
T TIGR01825 248 LIEYLK 253 (385)
T ss_pred HHHHHH
Confidence 666554
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=156.52 Aligned_cols=194 Identities=14% Similarity=0.182 Sum_probs=134.5
Q ss_pred CHHHHHHhccccccCCCCCCC-CCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYP-GARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd 137 (286)
.|++++++.+.+...+ .+.. +..+..+.....+|| +.+++++|.+. .+++++|+.++.++++++..+||
T Consensus 70 ~p~v~~a~~~~~~~~~-~~~~~s~~~~~~~~~~~~le----~~la~~~g~~~-----~~~~~sG~~An~~~l~~l~~~g~ 139 (407)
T PRK07179 70 HPDIIKAQIAALQEEG-DSLVMSAVFLHDDSPKPQFE----KKLAAFTGFES-----CLLCQSGWAANVGLLQTIADPNT 139 (407)
T ss_pred CHHHHHHHHHHHHHhC-CCCCccccccCCchHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhCCCCC
Confidence 6899999999886522 1111 222333333444555 78888888764 35555555588889999999999
Q ss_pred eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHH
Q 023191 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERI 215 (286)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I 215 (286)
.|++..+.|.+... ++...|..+ ++++ ..|++++++++++.++++|+++ +.| +|...|+++|
T Consensus 140 ~v~~~~~~h~s~~~--------~~~~~g~~~--~~~~------~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I 203 (407)
T PRK07179 140 PVYIDFFAHMSLWE--------GVRAAGAQA--HPFR------HNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADI 203 (407)
T ss_pred EEEEECCcCHHHHH--------HHHHCCCeE--EEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHH
Confidence 99998877766532 222344332 3322 2589999999976457888887 444 7889999999
Q ss_pred HHHHHhcCCEEEEeccccccccccC----CCCCCCC-cceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 216 RKVCNKQKAIMLADMAHISGLVAAG----VIPSPFE-YADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 216 ~~ia~~~~~~vivD~a~~~g~~~~~----~~~~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
.++|+++|+++|+|++|+.|..... ....++. .+|++++|+||+++ +++|++++++++.+..+
T Consensus 204 ~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g-~~~G~l~~~~~~~~~~~ 271 (407)
T PRK07179 204 VDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA-GRAGIITCPRELAEYVP 271 (407)
T ss_pred HHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh-ccCeEEEeCHHHHHHHH
Confidence 9999999999999999987654211 1111221 47999999999986 46899999988766554
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=156.08 Aligned_cols=158 Identities=20% Similarity=0.208 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
.....|+ +.++++.|.+ ++++++|++ ++.+++.+++++||+|+++++.|++....... .....|
T Consensus 53 pt~~~Le----~~lA~leg~e------~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~----~~~~~g- 117 (388)
T PRK08861 53 PNRGLLE----QTLSELESGK------GAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNT----RANKGD- 117 (388)
T ss_pred chHHHHH----HHHHHHhCCC------eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHH----HHhcCC-
Confidence 3455555 7788888854 388888888 88878899999999999999777654322110 011123
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
+++..++ ..|++++++++++ +|++|+++ |+| +|.+.|+++|.++|+++|+++++|+++..+... .
T Consensus 118 -i~v~~vd------~~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~-----~ 184 (388)
T PRK08861 118 -FKVQFVD------QSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQ-----K 184 (388)
T ss_pred -eEEEEEC------CCCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccC-----C
Confidence 2333322 2489999999987 99999997 767 778999999999999999999999998776432 2
Q ss_pred CCC-cceEEEeCCCCCCCCCC---ceEEEEecc
Q 023191 245 PFE-YADVVTTTTHKSLRGPR---GAMIFFRKG 273 (286)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~ 273 (286)
++. ++|++++|+|||++|+. ||+++++++
T Consensus 185 pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~ 217 (388)
T PRK08861 185 PLELGADFVIHSTTKYINGHSDVIGGVLITKTK 217 (388)
T ss_pred CcccCCCEEEeecceeccCCCcceeEEEEecHH
Confidence 333 69999999999999986 588877653
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-18 Score=152.66 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=119.0
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
+++.+++++|.+. .+++++|+.++..++.++ +++||+|+++.+.|.++.. .+...|.+++.++ +
T Consensus 23 ~~~~la~~~~~~~-----~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~--~ 87 (352)
T cd00616 23 FEKAFAEYLGVKY-----AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATAN--------AILLLGATPVFVD--I 87 (352)
T ss_pred HHHHHHHHhCCCe-----EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHH--------HHHHcCCeEEEEe--c
Confidence 4477888888642 355555555877788888 6999999999977776543 2334565555554 5
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeC
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTT 255 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s 255 (286)
+++++.+|++++++.+++ ++++|+++. .+|...|+++|.++|+++|+++|+|++|+.|....+.... ...|+.++|
T Consensus 88 ~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~--~~~d~~~~S 163 (352)
T cd00616 88 DPDTYNIDPELIEAAITP-RTKAIIPVH-LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVG--TFGDAGAFS 163 (352)
T ss_pred CCCcCCcCHHHHHHhcCc-CCeEEEEEC-CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcc--cCcceeEEc
Confidence 534688999999999976 899998862 3688889999999999999999999999988765432111 126788888
Q ss_pred CC--CCCCCCCceEEEEec-chhh
Q 023191 256 TH--KSLRGPRGAMIFFRK-GVKE 276 (286)
Q Consensus 256 ~~--K~l~gp~gG~l~~~~-~~~~ 276 (286)
+| |+++++.||++++++ ++.+
T Consensus 164 ~~~~K~~~~~~gg~~~~~~~~~~~ 187 (352)
T cd00616 164 FHPTKNLTTGEGGAVVTNDEELAE 187 (352)
T ss_pred CCCCCCCcccCceEEEECCHHHHH
Confidence 65 999888889888875 4443
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-18 Score=154.63 Aligned_cols=209 Identities=17% Similarity=0.263 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHcCceecCCCCC-------CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHC
Q 023191 33 EIADIIEHEKARQWKGLELIPSENF-------TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAF 105 (286)
Q Consensus 33 ~~~~~~~~~~~~~~~~i~L~~~e~~-------~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (286)
.++.+..++.........|..+++. .++...+++.+.+...+. . ++ ....++| +.+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~~--~-----~G--~~~~~fe----~~lA~~~ 76 (438)
T PRK15407 10 QILELVREYAELAHAPKPFVPGKSPIPPSGKVIDAKELQNLVDASLDFWL--T-----TG--RFNDAFE----KKLAEFL 76 (438)
T ss_pred HHHHHHHHHHHHhcccccccCCCCCCCcCccCCCHHHHHHHHHHHHhCcc--c-----CC--hhHHHHH----HHHHHHh
Confidence 3344444444333345566666662 234444555454433110 0 11 2234555 7778888
Q ss_pred CCCCCCcceeEEeCCChHHHHHHHHHh---------cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 106 RLDPEKWGVNVQSLSGSPSNFQVYTAL---------LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 106 g~~~~~~~~~v~~~sG~~a~~~~l~a~---------~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
|.+. .+++++|+.++.+++.++ ++|||+|+++++.|.++.. .+...|..+ ++++++
T Consensus 77 g~~~-----~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~--------~v~~~G~~p--v~vdvd 141 (438)
T PRK15407 77 GVRY-----ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVN--------PIIQNGLVP--VFVDVE 141 (438)
T ss_pred CCCe-----EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHH--------HHHHcCCEE--EEEecC
Confidence 8764 244445555777677665 5899999999977766543 333456544 444555
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCC
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTT 256 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~ 256 (286)
.+++.+|++++++.+++ +||+|+++.. .|...++++|.++|++||++||+|++|+.|....+..... ..|+.++|+
T Consensus 142 ~~~~~id~~~le~~i~~-~tkaVi~~~~-~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~--~gd~~~fSf 217 (438)
T PRK15407 142 LPTYNIDASLLEAAVSP-KTKAIMIAHT-LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGT--FGDIATLSF 217 (438)
T ss_pred CCcCCcCHHHHHHHcCc-CCeEEEEeCC-CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeec--cCceEEEeC
Confidence 55788999999999987 8999988632 4566799999999999999999999999998876643322 258777777
Q ss_pred C--CCCCCCCceEEEEecc
Q 023191 257 H--KSLRGPRGAMIFFRKG 273 (286)
Q Consensus 257 ~--K~l~gp~gG~l~~~~~ 273 (286)
| |.+....||+++++++
T Consensus 218 ~~~k~~~~geGG~l~t~d~ 236 (438)
T PRK15407 218 YPAHHITMGEGGAVFTNDP 236 (438)
T ss_pred CCCCCccccCceEEEECCH
Confidence 6 6676666899999875
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=156.28 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
....+|| +.+++++|.+. .+.+++|+.++.+++.+++++||+|+++++.|++....... .....|..
T Consensus 61 p~~~~Le----~~lA~~~g~~~-----~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~----~~~~~gi~ 127 (388)
T PRK07811 61 PTRTALE----EQLAALEGGAY-----GRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDK----VFTRWGVE 127 (388)
T ss_pred ccHHHHH----HHHHHHhCCCc-----eEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHH----hCcCCCeE
Confidence 3455555 77888888876 47788887788889999999999999999777654322110 11122433
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
++.+ + ..|++++++++++ +||+|+++ ++| +|...++++|.++|+++|+++|+|++++.+... .+
T Consensus 128 ~~~~--d------~~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~-----~p 193 (388)
T PRK07811 128 YTPV--D------LSDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQ-----QP 193 (388)
T ss_pred EEEe--C------CCCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccC-----Cc
Confidence 3222 2 2489999999988 89999997 776 678899999999999999999999998766432 12
Q ss_pred CC-cceEEEeCCCCCCCCCC---ceEEEEecc
Q 023191 246 FE-YADVVTTTTHKSLRGPR---GAMIFFRKG 273 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~ 273 (286)
+. ++|++++|++|+++||. ||+++++++
T Consensus 194 ~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~ 225 (388)
T PRK07811 194 LALGADVVVHSTTKYIGGHSDVVGGALVTNDE 225 (388)
T ss_pred hhhCCcEEEecCceeecCCCCcEEEEEEECCH
Confidence 22 59999999999999884 588888653
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=156.91 Aligned_cols=203 Identities=17% Similarity=0.134 Sum_probs=141.7
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..+++. +++.+++++.+++.. . ..|+ ..+..+++ +.++++++++++ +|++++|++
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~-------~~g~~~lr----~~ia~~~~~~~~----~I~~~~G~~~ 85 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAG-V-NRYP-------DMGAVELR----AALAEHLGVPPE----HVAVGCGSVA 85 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHh-c-CcCC-------CCcHHHHH----HHHHHHhCcCHH----HEEECCCHHH
Confidence 46889888773 678899999876643 1 1232 13455555 666677788764 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.++++|||+|+++.+.|. .+...++..|.+++.++ .+ +++.+|++++++.+++ ++++|+++
T Consensus 86 ~l~~~~~~~~~~gd~Vli~~p~y~--------~~~~~~~~~g~~~~~v~--~~-~~~~~~~~~l~~~~~~-~~~~v~l~~ 153 (352)
T PRK03321 86 LCQQLVQATAGPGDEVIFAWRSFE--------AYPILVQVAGATPVQVP--LT-PDHTHDLDAMAAAITD-RTRLIFVCN 153 (352)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCHH--------HHHHHHHHcCCEEEEcc--CC-CCCCCCHHHHHHhhcc-CCCEEEEeC
Confidence 666677888999999999884443 32223445665555454 44 3478999999999987 89999987
Q ss_pred CCC-CCCccCHHHHHHHHHh--cCCEEEEeccccccccccCCCCCCC---C-c-ceEEEeCCCCCCC--CCCceEEEEec
Q 023191 203 ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPF---E-Y-ADVVTTTTHKSLR--GPRGAMIFFRK 272 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~~~~~~---~-~-~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (286)
++| +|...+.++|.++|++ +++++|+|+++..-.. .+.....+ . . .-+++.|++|.|+ |.+.|++++++
T Consensus 154 p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~ 232 (352)
T PRK03321 154 PNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVR-DDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHP 232 (352)
T ss_pred CCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhcc-CcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCH
Confidence 766 7888999999999987 5899999999653222 11111111 1 1 2366889999885 44569999988
Q ss_pred chhhhhc
Q 023191 273 GVKEINK 279 (286)
Q Consensus 273 ~~~~~~~ 279 (286)
++.+..+
T Consensus 233 ~~~~~~~ 239 (352)
T PRK03321 233 EVIAALR 239 (352)
T ss_pred HHHHHHH
Confidence 7776554
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=156.85 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=114.4
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
++++.+++++|.+. .+++++|++++.+++. ++++||+|+++++.|+++...+. ..+...|.+++.++ .
T Consensus 51 ~le~~la~l~g~~~-----~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~----~~~~~~G~~v~~vd--~ 118 (378)
T TIGR01329 51 ALESLLAKLDKADR-----AFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLT----QVVPRSGVVVVHVD--T 118 (378)
T ss_pred HHHHHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHH----HHHHHcCcEEEEeC--C
Confidence 34488888888843 4777778776664554 78999999999977766543221 01123454444442 2
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEE
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (286)
.|++++++++++ +||+|+++ ++| +|.+.|+++|+++|+++|+++|+|++|+.+.....+ .. ++|+++
T Consensus 119 ------~d~~~le~~i~~-~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l-~~---g~Di~v 187 (378)
T TIGR01329 119 ------TDLDKVKAALGP-KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL-EL---GADIVY 187 (378)
T ss_pred ------CCHHHHHHhcCc-CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hc---CCcEEE
Confidence 289999999987 99999997 777 778899999999999999999999998766432111 11 599999
Q ss_pred eCCCCCCCCCC---ceEEEEecc
Q 023191 254 TTTHKSLRGPR---GAMIFFRKG 273 (286)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~~ 273 (286)
+|+||+++||. +|+++++++
T Consensus 188 ~S~tK~l~G~~~~~~G~v~~~~~ 210 (378)
T TIGR01329 188 HSATKFLAGHSDVMAGVLAVKGE 210 (378)
T ss_pred EecceeccCCccceeEEEEeCcH
Confidence 99999999875 588888664
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=155.20 Aligned_cols=202 Identities=15% Similarity=0.086 Sum_probs=138.0
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
..++|+.|+++ +++.+++++.+.+.... +|+. . ...+|+ +.++++++++++ +|++|+|++
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~Y~~------~-~~~~Lr----~~ia~~~~~~~~----~I~it~G~~~ 95 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREAAAEIW--KYGD------P-ENHDLR----HALAAHHGVAPE----NIMVGEGIDG 95 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHHHhh--cCCC------C-ccHHHH----HHHHHHhCCCHH----HEEEcCCHHH
Confidence 34699999884 68899999887653211 2322 1 134455 666667788774 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.++++|||.|++++|.|+.+ ...+...|.+++.+| .+ + ..+|++++++.+...++++|+++
T Consensus 96 ~l~~~~~~~~~~gd~vlv~~p~y~~~--------~~~~~~~g~~~~~vp--~~-~-~~~~~~~l~~~~~~~~~~~i~l~~ 163 (369)
T PRK08153 96 LLGLIVRLYVEPGDPVVTSLGAYPTF--------NYHVAGFGGRLVTVP--YR-D-DREDLDALLDAARRENAPLVYLAN 163 (369)
T ss_pred HHHHHHHHhcCCCCEEEECCCcchHH--------HHHHHHcCCeEEEee--CC-C-CCCCHHHHHHHhcccCCcEEEEeC
Confidence 77768888899999999999544443 333445666665555 33 2 35899999887754489999997
Q ss_pred CCC-CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCCC---cceEEEeCCCCCCC--CCCceEEEEecch
Q 023191 203 ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFE---YADVVTTTTHKSLR--GPRGAMIFFRKGV 274 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~~---~~D~v~~s~~K~l~--gp~gG~l~~~~~~ 274 (286)
|+| +|...+.+++.++++.. +++||+|+++.. ....+.. ..+. ...+++.|++|.|+ |.+.|+++++.++
T Consensus 164 P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~-~~~~~~~-~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~ 241 (369)
T PRK08153 164 PDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCE-TAPAGAA-PPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGT 241 (369)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhh-hcCcccc-hhhhhcCCCEEEEecchHhccCcchheeeeecCHHH
Confidence 777 78888887777776543 899999999652 2211111 1111 12377999999885 5566999998877
Q ss_pred hhhhc
Q 023191 275 KEINK 279 (286)
Q Consensus 275 ~~~~~ 279 (286)
.+..+
T Consensus 242 ~~~l~ 246 (369)
T PRK08153 242 IKAFD 246 (369)
T ss_pred HHHHH
Confidence 66554
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=156.53 Aligned_cols=162 Identities=20% Similarity=0.205 Sum_probs=121.6
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+...+|| +.++++.|.+. .+++.+|+.++..++.+++++||+|++++..|++.+. .+...+...|..
T Consensus 70 p~~~~le----~~lA~l~g~~~-----al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~----~~~~~~~~~G~~ 136 (403)
T PRK07810 70 PTVSMFE----ERLRLIEGAEA-----CFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFV----VCNEILPRWGVE 136 (403)
T ss_pred chHHHHH----HHHHHHhCCCc-----EEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHH----HHHHHHHHcCcE
Confidence 3455566 77888888763 5888888888777888999999999998865544332 222223345654
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
++.+ +. .|++++++++++ +|++|+++ ++| +|...++++|.++|+++|+++++|++|+.+.....+ ..
T Consensus 137 v~~v--d~------~d~~~l~~ai~~-~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~-~~- 205 (403)
T PRK07810 137 TVFV--DG------EDLSQWEEALSV-PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGL-PL- 205 (403)
T ss_pred EEEE--CC------CCHHHHHHhcCc-CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChh-hc-
Confidence 4444 22 389999999987 89999997 777 778889999999999999999999998876543221 11
Q ss_pred CCcceEEEeCCCCCCCCCC---ceEEEEecchh
Q 023191 246 FEYADVVTTTTHKSLRGPR---GAMIFFRKGVK 275 (286)
Q Consensus 246 ~~~~D~v~~s~~K~l~gp~---gG~l~~~~~~~ 275 (286)
++|++++|++|+++|+. ||+++++++..
T Consensus 206 --gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~ 236 (403)
T PRK07810 206 --GADVVVYSGTKHIDGQGRVLGGAILGDREYI 236 (403)
T ss_pred --CCcEEEccCCceecCCcCceeEEEEeChHHH
Confidence 59999999999998754 68888887643
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-18 Score=152.30 Aligned_cols=204 Identities=18% Similarity=0.211 Sum_probs=150.6
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC-CCCCCcceeEEeCCChH
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g-~~~~~~~~~v~~~sG~~ 123 (286)
+.++|+.+||| +|+.+++++.+.+.... .||+. ...+ +++.+++++| .+.+ +|++++|++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~~~~--rYPd~-------~~~~----l~~a~a~~~~~~~~~----~V~~gnGsd 85 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALDKLN--RYPDP-------DYRE----LRAALAEYYGVVDPE----NVLVGNGSD 85 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHHhhc--cCCCC-------cHHH----HHHHHHHHhCCCCcc----eEEEcCChH
Confidence 46899999997 46888888877664211 23331 2233 4477888888 5654 599999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++..++++++.|||.|+++. |+|.+|...+...|.+++.++ .+ + +.+|++.+.+.+.+ ++++|++|
T Consensus 86 e~i~~l~~~~~~~gd~vl~~~--------Ptf~~Y~~~a~~~g~~~~~v~--~~-~-~~~d~~~~~~~~~~-~~~lv~i~ 152 (356)
T COG0079 86 ELIELLVRAFVEPGDTVLIPE--------PTFSMYEIAAQLAGAEVVKVP--LK-E-FRLDLDAILAAIRD-KTKLVFLC 152 (356)
T ss_pred HHHHHHHHHhhcCCCEEEEcC--------CChHHHHHHHHhcCCeEEEec--cc-c-cccCHHHHHHhhhc-CCCEEEEe
Confidence 88889999999999999999 788888878888998887776 44 4 89999999999998 99999998
Q ss_pred -CCC-CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCCCcce--EEEeCCCCCC--CCCCceEEEEecch
Q 023191 203 -ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFEYAD--VVTTTTHKSL--RGPRGAMIFFRKGV 274 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~~~~D--~v~~s~~K~l--~gp~gG~l~~~~~~ 274 (286)
|+| +|...+.++|.++++.. +.+|++|+|+. ......... .+...+ +++-|++|.| .|-|-|+.+.+.++
T Consensus 153 nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~-eF~~~~~~~-l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~ 230 (356)
T COG0079 153 NPNNPTGTLLPREELRALLEALPEGGLVVIDEAYI-EFSPESSLE-LLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPEL 230 (356)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchh-hcCCchhhh-hccCCCCEEEEEecHHhhhcchhceeeccCCHHH
Confidence 555 77888888888777654 78999999943 222211100 001122 7788999965 45555999999998
Q ss_pred hhhhccCC
Q 023191 275 KEINKQGK 282 (286)
Q Consensus 275 ~~~~~~~~ 282 (286)
.+.+.+-+
T Consensus 231 i~~l~~vr 238 (356)
T COG0079 231 IAALNKVR 238 (356)
T ss_pred HHHHHHhc
Confidence 87776543
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=156.17 Aligned_cols=208 Identities=13% Similarity=0.084 Sum_probs=135.3
Q ss_pred HcCceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC--CCCCCcceeEE--e
Q 023191 46 WKGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQ--S 118 (286)
Q Consensus 46 ~~~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g--~~~~~~~~~v~--~ 118 (286)
.+.++|..|++ .++..+.+++.+++..... ......|+...+..++++++.+++.+..+ ++++ +|. .
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~----~v~~~~ 102 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAE--KNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEK----RIATVQ 102 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhcc--ccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccC----eEEEee
Confidence 46799988863 2344445555544321100 01113366778899999999998866544 3443 477 4
Q ss_pred CCChH-HHHHHH---HHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc
Q 023191 119 LSGSP-SNFQVY---TALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF 194 (286)
Q Consensus 119 ~sG~~-a~~~~l---~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~ 194 (286)
|.|++ +..+++ .++++|||+|++++ |+|+.|...+...|.+++.+++. +++++.+|++.+++.+...
T Consensus 103 t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~--------P~y~~~~~~~~~~G~~~~~v~l~-~~~~~~~d~~~l~~~~~~~ 173 (404)
T PTZ00376 103 ALSGTGALRLGFEFLKRFLPAGTTVYVSN--------PTWPNHVNIFKSAGLNVKEYRYY-DPKTKGLDFDGMLEDLRTA 173 (404)
T ss_pred ccCcchHHHHHHHHHHHhcCCCCEEEEcC--------CCchhHHHHHHHcCCceeecccc-CcccCCcCHHHHHHHHHhC
Confidence 78877 555444 47789999999999 66666665677888777666541 2245899999999988632
Q ss_pred --CCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCC---CC--CCCC--c-ceEEEeCCCCC
Q 023191 195 --RPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGV---IP--SPFE--Y-ADVVTTTTHKS 259 (286)
Q Consensus 195 --~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~---~~--~~~~--~-~D~v~~s~~K~ 259 (286)
++++++++ |+| +|... .+++|+++|++|++++|+|+++. .....+. .. ..+. . .-+++.|++|+
T Consensus 174 ~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~ 252 (404)
T PTZ00376 174 PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQ-GFASGDLDKDAYAIRLFAERGVEFLVAQSFSKN 252 (404)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhc-CccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCc
Confidence 45666667 777 77554 47788899999999999999953 2222110 00 0000 1 23779999998
Q ss_pred CC--CCCceEEE
Q 023191 260 LR--GPRGAMIF 269 (286)
Q Consensus 260 l~--gp~gG~l~ 269 (286)
|+ |.|-|+++
T Consensus 253 ~~~~GlRvG~~~ 264 (404)
T PTZ00376 253 MGLYGERIGALH 264 (404)
T ss_pred ccccccccceEE
Confidence 75 66779984
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-18 Score=159.00 Aligned_cols=171 Identities=22% Similarity=0.163 Sum_probs=121.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccc
Q 023191 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISA 163 (286)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (286)
|+......++| +.+++++|.+. .|++++|..++.+++.+++++||.|++.++.|.+... .+..
T Consensus 142 ~g~~~~~~ele----~~lA~~~g~~~-----ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~--------~~~~ 204 (489)
T PLN02483 142 GGTTKLHRELE----ELVARFVGKPA-----AIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVN--------GARG 204 (489)
T ss_pred cCCcHHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHH--------HHHH
Confidence 45455566666 77788888543 5999999887777889999999999999977777643 4456
Q ss_pred ceeeeEEEecccCCCCCCCCHHHHHHHhhh------cCC-----cEEEEc---CCCCCCccCHHHHHHHHHhcCCEEEEe
Q 023191 164 VSIFFETMPYRLNESTGYIDYDQLEKSATL------FRP-----KLIVAG---ASAYARLYDYERIRKVCNKQKAIMLAD 229 (286)
Q Consensus 164 ~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~~t-----k~v~i~---~~n~g~~~~l~~I~~ia~~~~~~vivD 229 (286)
.|.+++.++ .+ |++++++.+++ .++ +++++. .+..|...++++|+++|++|++++|+|
T Consensus 205 ~Ga~v~~~~--~~------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livD 276 (489)
T PLN02483 205 SGATIRVFQ--HN------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLD 276 (489)
T ss_pred cCCeEEEEe--CC------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEE
Confidence 776665554 22 45666655532 122 545553 233678899999999999999999999
Q ss_pred ccccccccccC------CCCCCCCcceEEEeCCCCCCCCCCceEEEEecchhhhhcc
Q 023191 230 MAHISGLVAAG------VIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 230 ~a~~~g~~~~~------~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~ 280 (286)
++|+.|..... .......++|++++|++|+|+ +.||++++++++.+.+++
T Consensus 277 Ea~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g-~~GG~i~~~~~li~~l~~ 332 (489)
T PLN02483 277 EAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFG-SCGGYIAGSKELIQYLKR 332 (489)
T ss_pred CcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcc-cCceEEEcCHHHHHHHHH
Confidence 99987654211 011011247999999999885 468999999888877764
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-18 Score=153.54 Aligned_cols=204 Identities=18% Similarity=0.119 Sum_probs=142.3
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|..++++ +++.+++++.+.+.. + ..|+.. .+ .+++ +.+++++|++++ +|++|+|++
T Consensus 32 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~~~------~~-~~lr----~~ia~~~~~~~~----~i~~t~G~~ 94 (367)
T PRK02731 32 ADIIKLASNENPLGPSPKAIEAIRAAADE-L-HRYPDG------SG-FELK----AALAEKFGVDPE----RIILGNGSD 94 (367)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh-h-cCCCCC------cH-HHHH----HHHHHHhCcCHH----HEEEcCCHH
Confidence 356889888774 678888988876643 1 123321 12 3444 667777888764 599999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++..++.+++++||+|+++++.|.. +...+...|.+++.++ . +++.+|++++++.+++ ++++|+++
T Consensus 95 ~~l~~~~~~l~~~gd~vl~~~p~y~~--------~~~~~~~~g~~~~~~~--~--~~~~~~~~~l~~~~~~-~~~~v~l~ 161 (367)
T PRK02731 95 EILELLARAYLGPGDEVIYSEHGFAV--------YPIAAQAVGAKPVEVP--A--KDYGHDLDAMLAAVTP-RTRLVFIA 161 (367)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCHHH--------HHHHHHHcCCeEEEec--c--cCCCCCHHHHHHHhCC-CCcEEEEe
Confidence 6666778889999999999955433 2223345666555554 3 3578999999999986 89999987
Q ss_pred -CCC-CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCC---C--cceEEEeCCCCCCC--CCCceEEEEe
Q 023191 203 -ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPF---E--YADVVTTTTHKSLR--GPRGAMIFFR 271 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~---~--~~D~v~~s~~K~l~--gp~gG~l~~~ 271 (286)
++| +|...+.++|.++++.+ ++++|+|+++...... +.....+ . ...+++.|++|.|+ |.+.|+++++
T Consensus 162 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~ 240 (367)
T PRK02731 162 NPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRR-KDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAP 240 (367)
T ss_pred CCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccC-cCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCC
Confidence 777 78899999999998875 8999999996543321 1111111 1 13477889999864 4555999999
Q ss_pred cchhhhhcc
Q 023191 272 KGVKEINKQ 280 (286)
Q Consensus 272 ~~~~~~~~~ 280 (286)
+++.+..++
T Consensus 241 ~~~~~~l~~ 249 (367)
T PRK02731 241 PEIIDALNR 249 (367)
T ss_pred HHHHHHHHH
Confidence 887766553
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=156.46 Aligned_cols=204 Identities=11% Similarity=0.092 Sum_probs=140.1
Q ss_pred CceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 48 GLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
.++|..+.+. ++|.+.+++.+..... ..|+...+..+|++++.+++.+..+ .+ .+|++|+|++ +
T Consensus 87 ~i~L~~g~p~~~~~p~~~~~~~~~~~~~--------~~Y~~~~g~~~lr~~ia~~~~~~~~--~~---~~Iiit~G~~~a 153 (431)
T PRK15481 87 LHDLAGGNPDPQRLPDLSRYFARLSRTP--------RLYGDAPVSPELHAWAARWLRDDCP--VA---FEIDLTSGAIDA 153 (431)
T ss_pred hhhhhcCCCChhHhHHHHHHHHHhhhhh--------hhcCCcCCCHHHHHHHHHHHhhccC--Cc---CeEEEecCcHHH
Confidence 4677766553 3455666666543321 1245556667788777777665433 22 2599999999 8
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc--
Q 023191 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-- 202 (286)
Q Consensus 125 ~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-- 202 (286)
+..++.++++|||.|++++ |+|..+...+...|.+++.++ ++ ++ .+|++++++++++ ++|+++++
T Consensus 154 l~~~~~~l~~pgd~Vlv~~--------P~y~~~~~~~~~~g~~~~~v~--~~-~~-g~~~~~l~~~~~~-~~k~i~~~p~ 220 (431)
T PRK15481 154 IERLLCAHLLPGDSVAVED--------PCFLSSINMLRYAGFSASPVS--VD-AE-GMQPEKLERALAQ-GARAVILTPR 220 (431)
T ss_pred HHHHHHHhCCCCCEEEEeC--------CCcHHHHHHHHHcCCeEEeec--cC-CC-CCCHHHHHHHHhc-CCCEEEECCC
Confidence 8879999999999999999 666655556677787666565 44 22 4899999999977 89998885
Q ss_pred CCC-CCCccCHH---HHHHHHHhc-CCEEEEeccccccccccCCCCCCCC---cceEEEeCCCCCCC-CCCceEEEEecc
Q 023191 203 ASA-YARLYDYE---RIRKVCNKQ-KAIMLADMAHISGLVAAGVIPSPFE---YADVVTTTTHKSLR-GPRGAMIFFRKG 273 (286)
Q Consensus 203 ~~n-~g~~~~l~---~I~~ia~~~-~~~vivD~a~~~g~~~~~~~~~~~~---~~D~v~~s~~K~l~-gp~gG~l~~~~~ 273 (286)
|+| +|...+.+ +|.++|++| +++||+|+++.. ....+. ...+. ..-+++.|++|.|+ |.+-|+++.+++
T Consensus 221 p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~-~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~ 298 (431)
T PRK15481 221 AHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFAL-LSSSPY-HSVIPQTTQRWALIRSVSKALGPDLRLAFVASDSA 298 (431)
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhh-hccCCC-CCCCcCCCCCEEEEeeeccccCCCceeEEEeCCHH
Confidence 455 66777654 999999999 999999999642 221111 11111 13478999999885 223399999887
Q ss_pred hhhhhc
Q 023191 274 VKEINK 279 (286)
Q Consensus 274 ~~~~~~ 279 (286)
+.+..+
T Consensus 299 ~~~~~~ 304 (431)
T PRK15481 299 TSARLR 304 (431)
T ss_pred HHHHHH
Confidence 765554
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=154.71 Aligned_cols=162 Identities=17% Similarity=0.132 Sum_probs=117.5
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+...++| +.+++++|.+. .+++++|+.++..++.++++|||+|+++.+.|.++...... +...|.+
T Consensus 53 p~~~~lE----~~lA~l~g~~~-----~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~-----~~~~g~~ 118 (385)
T PRK08574 53 PTLRPLE----EALAKLEGGVD-----ALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKS-----LEKFGVK 118 (385)
T ss_pred ccHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-----hhccCcE
Confidence 4456666 77888888753 36677776688878889999999999999887776432210 1123432
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
+..+ .+|++++++++++++||+|+++ ++| +|...|+++|+++|+++|+++++|++|+.|.....+ .
T Consensus 119 v~~~---------~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~-- 186 (385)
T PRK08574 119 VVLA---------YPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-R-- 186 (385)
T ss_pred EEEE---------CCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh-h--
Confidence 2211 2468999999876579999997 666 678889999999999999999999999877543222 1
Q ss_pred CCcceEEEeCCCCCCCCCC---ceEEEEe-cchhh
Q 023191 246 FEYADVVTTTTHKSLRGPR---GAMIFFR-KGVKE 276 (286)
Q Consensus 246 ~~~~D~v~~s~~K~l~gp~---gG~l~~~-~~~~~ 276 (286)
.++|++++|++|+++||. ||+++++ +++.+
T Consensus 187 -~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~ 220 (385)
T PRK08574 187 -HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLE 220 (385)
T ss_pred -hCCcEEEeeCceeecCCCCceeEEEEECcHHHHH
Confidence 259999999999999874 5756664 44443
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=154.87 Aligned_cols=202 Identities=15% Similarity=0.094 Sum_probs=141.7
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChH
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~ 123 (286)
+.++|..++++ +++.+++++.+.+.... +|+. ..+ .+++ +.+++++|++++ +|++ ++|++
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~------~~~-~~lr----~~ia~~~~~~~~----~i~~~~~Ga~ 97 (361)
T PRK00950 35 SIIKLGSNENPLGPSPKAVEAIEKELSKIH--RYPE------PDA-PELR----EALSKYTGVPVE----NIIVGGDGMD 97 (361)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHhhc--CCCC------CCH-HHHH----HHHHHHhCCCHH----HEEEeCCCHH
Confidence 56899888774 57888888877654311 2332 122 3444 667777888775 4888 78988
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++..+++++++|||+|++++| .|..+...+...|.+++.++ .+ +++.+|++++++.+.+ ++++++++
T Consensus 98 ~~i~~~~~~~~~~gd~vlv~~p--------~y~~~~~~~~~~g~~~~~~~--~~-~~~~~~~~~l~~~~~~-~~~~v~~~ 165 (361)
T PRK00950 98 EVIDTLMRTFIDPGDEVIIPTP--------TFSYYEISAKAHGAKPVYAK--RE-EDFSLDVDSVLNAITE-KTKVIFLC 165 (361)
T ss_pred HHHHHHHHHhcCCCCEEEEcCC--------ChHHHHHHHHHcCCEEEEee--cC-CCCCcCHHHHHHHhcc-CCCEEEEe
Confidence 666678888999999999994 44433334455676665554 33 5678999999999876 89999886
Q ss_pred -CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCc--ceEEEeCCCCCCCCC--CceEEEEecchhh
Q 023191 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEY--ADVVTTTTHKSLRGP--RGAMIFFRKGVKE 276 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~--~D~v~~s~~K~l~gp--~gG~l~~~~~~~~ 276 (286)
++| +|...+.+++.++|+++++++|+|++|.. ........ .... .-+++.|++|.|+.| +.|++++++++.+
T Consensus 166 ~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~-~~~~~~~~-~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~ 243 (361)
T PRK00950 166 TPNNPTGNLIPEEDIRKILESTDALVFVDEAYVE-FAEYDYTP-LALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLID 243 (361)
T ss_pred CCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhh-hCccchHH-HHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHH
Confidence 766 78899999999999999999999999752 22111100 0011 236788999988534 4599999888775
Q ss_pred hhc
Q 023191 277 INK 279 (286)
Q Consensus 277 ~~~ 279 (286)
..+
T Consensus 244 ~~~ 246 (361)
T PRK00950 244 YYM 246 (361)
T ss_pred HHH
Confidence 554
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-18 Score=156.22 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeee
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 168 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 168 (286)
...+|| +.+++++|.+. .+++.+|++++..++.++++|||+|+++++.|+++..... ......|.++
T Consensus 66 ~~~~Le----~~lA~l~G~~~-----~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~----~~~~~~G~~v 132 (398)
T PRK07504 66 TVDMFE----KRMCALEGAED-----ARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVE----TLLPRYGIES 132 (398)
T ss_pred hHHHHH----HHHHHHhCCCe-----eeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHH----HHHhhcCeEE
Confidence 345555 78888899876 2567788777776788889999999999977766532211 0112234433
Q ss_pred EEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC
Q 023191 169 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 246 (286)
Q Consensus 169 ~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~ 246 (286)
+.+ + .+|++++++++++ +||+|+++ |+| +|...|+++|.++|+++|+++|+|++|+.+... .++
T Consensus 133 ~~v----d----~~d~e~l~~ai~~-~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~-----~~~ 198 (398)
T PRK07504 133 TLV----D----GLDLDNWEKAVRP-NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQ-----KPL 198 (398)
T ss_pred EEE----C----CCCHHHHHHhcCc-CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccC-----Cch
Confidence 333 2 3689999999987 99999997 666 678899999999999999999999998766542 222
Q ss_pred C-cceEEEeCCCCCCCCCC---ceEEEEecchh
Q 023191 247 E-YADVVTTTTHKSLRGPR---GAMIFFRKGVK 275 (286)
Q Consensus 247 ~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~ 275 (286)
. ++|++++|+||+|+|+. ||++++++++.
T Consensus 199 ~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i 231 (398)
T PRK07504 199 ELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWI 231 (398)
T ss_pred hhCCCEEEeeccccccCCccceEEEEEeCcHHH
Confidence 2 59999999999998753 47888877644
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-18 Score=155.40 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=122.9
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+...+|| +.+++++|.+. .+++++|+.++.+++.+++++||+|+++++.|++.+... ...+...|..
T Consensus 59 p~~~~le----~~lA~l~g~~~-----av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~----~~~~~~~G~~ 125 (391)
T TIGR01328 59 PTVSNLE----GRIAFLEGTEA-----AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALL----EHALTKFGIQ 125 (391)
T ss_pred chHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHH----HHHHhcCCeE
Confidence 3455566 78888889865 478888877887788899999999999997766543221 1122334544
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
++.+ +.+ |++++++++++ +|++|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+.... +
T Consensus 126 ~~~v--d~~------d~e~l~~~i~~-~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~-----~ 191 (391)
T TIGR01328 126 VDFI--NMA------IPEEVKAHIKD-NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTN-----P 191 (391)
T ss_pred EEEE--CCC------CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCC-----c
Confidence 4333 222 79999999987 89999997 766 6788899999999999999999999987664421 2
Q ss_pred CC-cceEEEeCCCCCCCCCC---ceEEEEecchhhhhc
Q 023191 246 FE-YADVVTTTTHKSLRGPR---GAMIFFRKGVKEINK 279 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~~~~ 279 (286)
+. ++|+++.|++|+++|+. ||+++.++++.+..+
T Consensus 192 ~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~ 229 (391)
T TIGR01328 192 VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIR 229 (391)
T ss_pred hhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHH
Confidence 22 59999999999998765 588888877654433
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-18 Score=153.79 Aligned_cols=198 Identities=16% Similarity=0.178 Sum_probs=137.2
Q ss_pred CCHHHHHHhccccccCCCCCCCCCc-ccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGAR-YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPH 136 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~G 136 (286)
..|++++++.+++.. |..++.+.+ +|+......+|| +.+++++|.+. .+++++|.+++..++.+++++|
T Consensus 13 ~~~~~~~~~~~a~~~-~g~~~~~sr~~yg~~~~~~~LE----~~lA~~~g~e~-----al~~~sG~~a~~~~i~~l~~~G 82 (392)
T PLN03227 13 SSPTLRQTALESLSH-YGCGSCGPRGFYGTIDAHLELE----QCMAEFLGTES-----AILYSDGASTTSSTVAAFAKRG 82 (392)
T ss_pred CCHHHHHHHHHHHHH-hCCCCcccccccCChHHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHHHHHHhCCCC
Confidence 478899999888865 544544433 455555566666 77888888864 5999999997777999999999
Q ss_pred CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh----------cCCcEEEEc-CCC
Q 023191 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL----------FRPKLIVAG-ASA 205 (286)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~----------~~tk~v~i~-~~n 205 (286)
|+|++.+..|++... ++.+.+..++.+ +.+ ..-|++.+.+.+.+ .++++|++. +.|
T Consensus 83 D~Vl~~~~~h~s~~~--------~~~l~~~~~~~~--~~~---d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~ 149 (392)
T PLN03227 83 DLLVVDRGVNEALLV--------GVSLSRANVRWF--RHN---DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYK 149 (392)
T ss_pred CEEEEeccccHHHHH--------HHHHcCCeEEEe--CCC---CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcC
Confidence 999999987776643 223334333222 222 11133444334431 157888887 444
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEecccccccccc---CCC----CCCCCcceEEEeCCCCCCCCCCceEEEEecchhhh
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA---GVI----PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~~----~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~ 277 (286)
.|.+.|+++|.++|++||+++|+|++|+.|.... +.. ..+..++|++++|++|.+ ||.||++++++++.+.
T Consensus 150 ~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~gg~v~~~~~~~~~ 228 (392)
T PLN03227 150 NTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVGGMTVGSEEVVDH 228 (392)
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccCcEEecCHHHHHH
Confidence 6688999999999999999999999998665421 100 012235899999999976 6889999998887765
Q ss_pred hc
Q 023191 278 NK 279 (286)
Q Consensus 278 ~~ 279 (286)
.+
T Consensus 229 ~~ 230 (392)
T PLN03227 229 QR 230 (392)
T ss_pred HH
Confidence 54
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=138.77 Aligned_cols=208 Identities=17% Similarity=0.210 Sum_probs=157.8
Q ss_pred HcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccC-Ccc-h--HHHHHHHHHHHHHHHCCCCCCCcceeEEeC
Q 023191 46 WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYG-GNE-Y--IDMAESLCQKRALEAFRLDPEKWGVNVQSL 119 (286)
Q Consensus 46 ~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~-~~~-~--~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~ 119 (286)
++.||+++-+. .+++++++|+.+ |.|||+-..+.. +.- . .+.+.+ ..+.+++++|+|. +.+|
T Consensus 15 r~~iNv~PiQrGGiLt~eArkal~E-----~gDGYSvCD~C~~Grldei~kPpI~~-F~~dlaeFlg~D~------~R~t 82 (382)
T COG1103 15 RGFINVNPIQRGGILTEEARKALLE-----WGDGYSVCDFCLEGRLDEITKPPIKD-FLEDLAEFLGMDE------VRVT 82 (382)
T ss_pred cCccccChhhccCcCCHHHHHHHHH-----hcCCcchhhhhccCccccccCCcHHH-HHHHHHHHhCCce------eeec
Confidence 36788865444 579999999976 666777766663 110 0 111221 2355899999986 9999
Q ss_pred CChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh-----
Q 023191 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL----- 193 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~----- 193 (286)
.|+- +-++++.+++++||-|++....|.+.+- .++.+|..+..+| ....+.+.+++|...+.|.+
T Consensus 83 ~GARe~KfavMhal~~~gd~vV~D~~aHYttyv--------AAEragl~v~eVp-~tg~Pey~i~~e~y~~viee~~~~~ 153 (382)
T COG1103 83 AGAREAKFAVMHALCKEGDWVVVDSLAHYTTYV--------AAERAGLNVAEVP-NTGYPEYKITPEGYAEVIEEVKDEG 153 (382)
T ss_pred ccchhhHHHHHHHhccCCCEEEEcCcchHHHHH--------HHHhcCCeEEecC-CCCCCceEecHHHHHHHHHHHHhcc
Confidence 9999 9999999999999999998876654432 4557787787787 33446788999888777643
Q ss_pred -cCCcEEEEc--CCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEE
Q 023191 194 -FRPKLIVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIF 269 (286)
Q Consensus 194 -~~tk~v~i~--~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~ 269 (286)
..+.+.+++ -.++|...+.++++++|++++++++..+|+..|-.+....... +|++++|+||++.+... |++.
T Consensus 154 g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g---~DFiVgSGHKsmAAs~PiGvl~ 230 (382)
T COG1103 154 GDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIG---ADFIVGSGHKSMAASAPIGVLA 230 (382)
T ss_pred CCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccC---CCEEEecCccchhccCCeeEEe
Confidence 136677776 4558999999999999999999999999999998876655555 99999999999977655 9999
Q ss_pred Eecchhhh
Q 023191 270 FRKGVKEI 277 (286)
Q Consensus 270 ~~~~~~~~ 277 (286)
.+.++.+.
T Consensus 231 ~~eE~ae~ 238 (382)
T COG1103 231 MSEEWAEI 238 (382)
T ss_pred ehhHHHHH
Confidence 99988754
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-18 Score=155.32 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeee
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 168 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 168 (286)
...++| +.+++++|.+. .|++++|+.++.+++.++++|||+|+++.+.|+..+.. +...+...|.++
T Consensus 66 ~~~~le----~~lA~l~g~~~-----~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~----~~~~~~~~G~~v 132 (403)
T PRK07503 66 TLALLE----QRMASLEGGEA-----AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAF----LHHGLGEFGVTV 132 (403)
T ss_pred hHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHH----HHHHHhhCCEEE
Confidence 345555 78888889864 48888888877778888999999999998766543221 111223345444
Q ss_pred EEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC
Q 023191 169 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 246 (286)
Q Consensus 169 ~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~ 246 (286)
+.+ +. .|++++++++++ +||+|+++ ++| +|...|+++|.++|+++|+++|+|++|+.+... .++
T Consensus 133 ~~v--d~------~d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~-----~~l 198 (403)
T PRK07503 133 RHV--DL------TDPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQ-----RPL 198 (403)
T ss_pred EEe--CC------CCHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-----Cch
Confidence 333 22 278999999987 89999997 777 778889999999999999999999998765432 122
Q ss_pred C-cceEEEeCCCCCCCCCC---ceEEEEecchhhhh
Q 023191 247 E-YADVVTTTTHKSLRGPR---GAMIFFRKGVKEIN 278 (286)
Q Consensus 247 ~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~~~ 278 (286)
. ++|++++|++|+++|+. ||+++.++++.+..
T Consensus 199 ~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l 234 (403)
T PRK07503 199 ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRI 234 (403)
T ss_pred hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHH
Confidence 2 58999999999998864 68888766655444
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=151.82 Aligned_cols=208 Identities=19% Similarity=0.196 Sum_probs=138.7
Q ss_pred HcCceecCCCC--C-CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 46 WKGLELIPSEN--F-TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 46 ~~~i~L~~~e~--~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
++.|+|..+++ + +++.+++++.+.+.. |..+++.. ....+...+.+.+++.++++++.+ . .+++++|+
T Consensus 39 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~---~~~~g~~~~~~~l~~~la~~~~~~--~---~i~~~~g~ 109 (385)
T PRK05958 39 RRMLNFASNDYLGLARHPRLIAAAQQAARR-YGAGSGGS---RLVTGNSPAHEALEEELAEWFGAE--R---ALLFSSGY 109 (385)
T ss_pred ceEEEeeCCCcccCCCCHHHHHHHHHHHHh-cCCCCCCc---CcccCCcHHHHHHHHHHHHHhCCC--c---EEEECcHH
Confidence 35688887764 3 578999999988864 32222211 111122345556778888888842 2 47777777
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEE
Q 023191 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIV 200 (286)
Q Consensus 123 ~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~ 200 (286)
.++..++.+++++||+|++.++.|+++.. .+...|..++.++ ..|++++++.+++. ++++++
T Consensus 110 ~~~~~~l~~~~~~gd~V~~~~~~~~~~~~--------~~~~~g~~~~~~~--------~~d~~~l~~~i~~~~~~~~lvi 173 (385)
T PRK05958 110 AANLAVLTALAGKGDLIVSDKLNHASLID--------GARLSRARVRRYP--------HNDVDALEALLAKWRAGRALIV 173 (385)
T ss_pred HHHHHHHHHhCCCCCEEEEeCccCHHHHH--------HHHhcCCceEEeC--------CCCHHHHHHHHHhccCCCeEEE
Confidence 76666778889999999999977766543 2334554444333 13889999988763 244555
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEecccccccccc-CC--CC-CCCC--cceEEEeCCCCCCCCCCceEEEEec
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA-GV--IP-SPFE--YADVVTTTTHKSLRGPRGAMIFFRK 272 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~-~~--~~-~~~~--~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (286)
++ +.| +|...++++|.++|++||+++|+|++|+.|.... +. .. ..+. ..++++.|+||+|+ +.||+++.++
T Consensus 174 ~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~Gg~~~~~~ 252 (385)
T PRK05958 174 TESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALG-SSGAAVLGSE 252 (385)
T ss_pred EEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcc-cCCcEEEcCH
Confidence 54 333 6678899999999999999999999997765431 11 00 0111 24477999999994 5678888887
Q ss_pred chhhhhc
Q 023191 273 GVKEINK 279 (286)
Q Consensus 273 ~~~~~~~ 279 (286)
++.+..+
T Consensus 253 ~~~~~~~ 259 (385)
T PRK05958 253 TLIDYLI 259 (385)
T ss_pred HHHHHHH
Confidence 7765543
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=159.75 Aligned_cols=206 Identities=17% Similarity=0.182 Sum_probs=142.4
Q ss_pred cCceecCCCC---CCCHHHHHHhccccccCCCCCCCCCc-ccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGAR-YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
+.++|..+.. ..++++++++.+.+.+ |..++.+.+ +|+..+...++| +.++++++.+. .|++++|.
T Consensus 110 ~~id~~s~~~lgl~~~~~i~ea~~~al~~-~G~g~~g~r~~yg~~~~~~~Le----e~La~~~~~~~-----~i~~s~G~ 179 (481)
T PLN02822 110 DVVNFASANYLGLIGNEKIKESCTSALEK-YGVGSCGPRGFYGTIDVHLDCE----TKIAKFLGTPD-----SILYSYGL 179 (481)
T ss_pred eEEEeECCCcCCCCCCHHHHHHHHHHHHH-hCCCCcccCccccCHHHHHHHH----HHHHHHhCCCC-----EEEECCHH
Confidence 4578876543 3589999999998876 433555433 355555555666 77778888642 59999998
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhh---h-----c
Q 023191 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT---L-----F 194 (286)
Q Consensus 123 ~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~---~-----~ 194 (286)
+++..++.+++++||.|++....|.+... ++.+.+..++.++ .+ |.++++..+. . .
T Consensus 180 ~a~~sai~a~~~~gd~Ii~d~~~H~s~~~--------~~~ls~~~~~~~~--~n------d~~~l~~~l~~~~~~~~~~~ 243 (481)
T PLN02822 180 STIFSVIPAFCKKGDIIVADEGVHWGIQN--------GLYLSRSTIVYFK--HN------DMESLRNTLEKLTAENKRKK 243 (481)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCccHHHHH--------HHHHcCCeEEEEC--CC------CHHHHHHHHHHHhhhhcccC
Confidence 87777999999999999987765544422 3445555444443 33 3344443332 1 1
Q ss_pred CC-cEEEEc--CCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccC---C-CCCCC--CcceEEEeCCCCCCCCCCc
Q 023191 195 RP-KLIVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG---V-IPSPF--EYADVVTTTTHKSLRGPRG 265 (286)
Q Consensus 195 ~t-k~v~i~--~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~---~-~~~~~--~~~D~v~~s~~K~l~gp~g 265 (286)
++ ++|+++ .+|+|.+.|+++|.++|++||+++|+|++|+.|.+... . ....+ ...|++++|++|.|+ ..|
T Consensus 244 ~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~~G 322 (481)
T PLN02822 244 KLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-TEG 322 (481)
T ss_pred CCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-hCC
Confidence 35 577775 45588999999999999999999999999997765421 0 11111 247999999999985 567
Q ss_pred eEEEEecchhhhhc
Q 023191 266 AMIFFRKGVKEINK 279 (286)
Q Consensus 266 G~l~~~~~~~~~~~ 279 (286)
|+++++.++.+..+
T Consensus 323 G~i~g~~~ii~~~~ 336 (481)
T PLN02822 323 GFCTGSARVVDHQR 336 (481)
T ss_pred eEEEcCHHHHHHHH
Confidence 99999988877665
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-18 Score=154.58 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=118.2
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+++.+++++|.+. .+++++|+.++.+++. ++++||+|+++++.|++.+..+. ..+...|.+++.++ .
T Consensus 59 le~~lA~l~g~~~-----~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~----~~~~~~G~~v~~v~--~- 125 (390)
T PRK08064 59 LEDIIAELEGGTK-----GFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMIT----EVLSRFGIEHTFVD--M- 125 (390)
T ss_pred HHHHHHHHhCCCC-----eEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHH----HHHHHcCCEEEEEC--C-
Confidence 4488888899864 4889999887665665 78999999999988876543221 11223465555443 2
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEe
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (286)
.|++++++.+++ +||+|+++ |+| +|...|+++|.++|+++|+++++|++++.+...... .. ++|+++.
T Consensus 126 -----~d~~~l~~~l~~-~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~-~~---g~Divv~ 195 (390)
T PRK08064 126 -----TNLEEVAQNIKP-NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL-DL---GADVVLH 195 (390)
T ss_pred -----CCHHHHHHhcCC-CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch-hh---CCcEEEe
Confidence 278999999987 89999998 777 778899999999999999999999997765432111 11 5999999
Q ss_pred CCCCCCCCCCc---eEEEEec-chhhh
Q 023191 255 TTHKSLRGPRG---AMIFFRK-GVKEI 277 (286)
Q Consensus 255 s~~K~l~gp~g---G~l~~~~-~~~~~ 277 (286)
|+||+++|+.+ |++++++ ++.+.
T Consensus 196 S~tK~~~G~~~~laG~~v~~~~~~~~~ 222 (390)
T PRK08064 196 SATKFLAGHSDVLAGLAVVKDEELAQK 222 (390)
T ss_pred ecceeccCCccceeEEEEeCCHHHHHH
Confidence 99999998864 8888875 44443
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=152.89 Aligned_cols=202 Identities=15% Similarity=0.150 Sum_probs=134.0
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|+.++++ +|+.+++++.+.+.. . ..|+. .+..+++ +.++++++++++ +|++|+|++
T Consensus 21 ~~i~l~~~~~~~~~p~~~~~a~~~~~~~-~-~~y~~-------~~~~~lr----~~ia~~~~~~~~----~i~it~Ga~~ 83 (356)
T PRK08056 21 QLLDFSANINPLGMPVSLKRAIIDNLDC-A-ERYPD-------VEYRHLH----QALARHHQVPAS----WILAGNGETE 83 (356)
T ss_pred hEEEeccccCCCCCCHHHHHHHHHHHHh-c-ccCcC-------ccHHHHH----HHHHHHhCcChh----hEEECCCHHH
Confidence 46899999885 688999998876543 1 12322 1234444 666777788875 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.++ .+|+ +++++ |.|..+...+...|.+++.++++.+ +++.+| +++++.+.+ ++|+|+++
T Consensus 84 ~l~~~~~~l-~~g~-viv~~--------P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~-~~~~~~~~~-~~k~v~l~~ 150 (356)
T PRK08056 84 SIFAVVSGL-KPRR-AMIVT--------PGFAEYRRALQQVGCEIRRYSLREA-DGWQLT-DAILEALTP-DLDCLFLCT 150 (356)
T ss_pred HHHHHHHHh-CCCC-EEEeC--------CCcHHHHHHHHHcCCeEEEEecccc-cCCCcc-HHHHHhccC-CCCEEEEeC
Confidence 776677765 7786 66667 5555555455677777766664321 346677 455566665 89999997
Q ss_pred CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCC-CCCCCC--cceEEEeCCCCCCCCC--CceEEEEec-
Q 023191 203 ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGV-IPSPFE--YADVVTTTTHKSLRGP--RGAMIFFRK- 272 (286)
Q Consensus 203 ~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~~~~--~~D~v~~s~~K~l~gp--~gG~l~~~~- 272 (286)
|+| +|...+ +++|+++|+++++++|+|+++. .....+. ....+. ...+++.|++|+|+.| +-|++++.+
T Consensus 151 p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~ 229 (356)
T PRK08056 151 PNNPTGLLPERQLLQAIAERCKSLNIALILDEAFI-DFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDD 229 (356)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchh-ccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCH
Confidence 777 777666 7889999999999999999953 2221110 000111 2568899999988533 449999853
Q ss_pred chhhhhc
Q 023191 273 GVKEINK 279 (286)
Q Consensus 273 ~~~~~~~ 279 (286)
++.+..+
T Consensus 230 ~~~~~l~ 236 (356)
T PRK08056 230 AAVARMR 236 (356)
T ss_pred HHHHHHH
Confidence 4544443
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.4e-18 Score=151.37 Aligned_cols=200 Identities=14% Similarity=0.037 Sum_probs=133.6
Q ss_pred HcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC-CCCcceeEEeCCCh
Q 023191 46 WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGS 122 (286)
Q Consensus 46 ~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~v~~~sG~ 122 (286)
...++|..+++ ++++.+++++.+.... .. |+...+..++++++++++.+.+|.+ .+. .+|++|+|+
T Consensus 21 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~---~~------Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~--~~I~it~G~ 89 (357)
T TIGR03539 21 DGIVDLSVGTPVDPVPPLIRAALAAAADA---PG------YPQTWGTPELREAIVDWLERRRGVPGLDP--TAVLPVIGT 89 (357)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhh---CC------CCcccCCHHHHHHHHHHHHHhcCCCCCCc--CeEEEccCh
Confidence 35688988765 4577888888765422 12 3444667899999999998887754 332 369999999
Q ss_pred H-HHHHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 123 P-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 123 ~-a~~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
+ ++..++..+ +++||.|++++|.|++ +...+...|.++ +++ + |++.++ +.++++|+
T Consensus 90 ~~~i~~~~~~l~~~~gd~Vl~~~p~y~~--------~~~~~~~~g~~~--~~v--~------~~~~l~----~~~~~~v~ 147 (357)
T TIGR03539 90 KELVAWLPTLLGLGPGDTVVIPELAYPT--------YEVGALLAGATP--VAA--D------DPTELD----PVGPDLIW 147 (357)
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCCcHH--------HHHHHHhcCCEE--ecc--C------ChhhcC----ccCccEEE
Confidence 9 776677777 7999999999955543 333445566544 332 1 233322 23789999
Q ss_pred Ec-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--------cceEEEeCCCCCC--CCCCc
Q 023191 201 AG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--------YADVVTTTTHKSL--RGPRG 265 (286)
Q Consensus 201 i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--------~~D~v~~s~~K~l--~gp~g 265 (286)
++ ++| +|...+ +++|.++|++||+++|+|+++.. ....+.....+. ...+++.|++|.| .|.+.
T Consensus 148 ~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~ 226 (357)
T TIGR03539 148 LNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLE-LGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRA 226 (357)
T ss_pred EeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhh-hccCCCCccceecccCCCccccEEEEeccccccCCCceeE
Confidence 97 777 776554 66789999999999999999742 221111111110 1237799999985 66677
Q ss_pred eEEEEecchhhhhc
Q 023191 266 AMIFFRKGVKEINK 279 (286)
Q Consensus 266 G~l~~~~~~~~~~~ 279 (286)
|++++++++.+..+
T Consensus 227 G~~i~~~~~~~~~~ 240 (357)
T TIGR03539 227 GFVAGDPALVAELL 240 (357)
T ss_pred EEEecCHHHHHHHH
Confidence 99998877665443
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=154.33 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=119.4
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+...+|| +.+++++|.+. .+++.+|+.++.+++.++++|||+|+++++.|++.+.... ......|..
T Consensus 61 pt~~~Le----~~lA~l~G~~~-----al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~----~~~~~~gi~ 127 (386)
T PRK06767 61 PTVKLFE----ERMAVLEGGEE-----ALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLE----VLEEKFMIT 127 (386)
T ss_pred cchHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHH----HHHhhcCeE
Confidence 3455666 78888888753 5888889887777888999999999999977765543211 011112322
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
+..+ ...|++++++++++ +||+|+++ ++| +|...|+++|.++|+++|+++++|++++.+.... +
T Consensus 128 ~~~~--------~~~d~~~l~~~i~~-~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~-----p 193 (386)
T PRK06767 128 HSFC--------DMETEADIENKIRP-NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQR-----P 193 (386)
T ss_pred EEEe--------CCCCHHHHHHhhCc-CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCC-----c
Confidence 2111 12488999999987 89999997 666 6788999999999999999999999987554332 2
Q ss_pred CC-cceEEEeCCCCCCCCCC---ceEEEEecchhh
Q 023191 246 FE-YADVVTTTTHKSLRGPR---GAMIFFRKGVKE 276 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~ 276 (286)
+. ++|+++.|++|+++|+. ||++++++++.+
T Consensus 194 l~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~ 228 (386)
T PRK06767 194 LELGCDAVVHSATKYIGGHGDVVAGVTICKTRALA 228 (386)
T ss_pred hhcCCcEEEecCcceecCCCCceeEEEEeChHHHH
Confidence 22 58999999999998875 699999887543
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-18 Score=152.49 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=111.7
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
+....|| +.++++.+... +++++|++ |+.+++.++++|||+|+++++.|++...... ......|.
T Consensus 61 pt~~~Le----~~iA~le~~~~------~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~----~~l~~~Gi 126 (394)
T PRK09028 61 PTHFAFQ----AAIVELEGGAG------TALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCD----KILKGFGI 126 (394)
T ss_pred chHHHHH----HHHHHHhCCCc------EEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHH----Hhhhhcce
Confidence 3445566 66666666542 45555555 8877889999999999999977755432110 01122343
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
++..+ +. -|.+.+++++++ +||+|+++ ++| ++...++++|+++||++|+++++|++|+.+.. ..
T Consensus 127 ~v~~v--~~------~~~e~l~~~l~~-~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-----~~ 192 (394)
T PRK09028 127 ETTYY--DP------MIGEGIRELIRP-NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-----SR 192 (394)
T ss_pred EEEEE--CC------CCHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-----CC
Confidence 33322 21 156789998887 89999998 777 66889999999999999999999999887642 22
Q ss_pred CCC-cceEEEeCCCCCCCCCCc---eEEEEecch
Q 023191 245 PFE-YADVVTTTTHKSLRGPRG---AMIFFRKGV 274 (286)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~~ 274 (286)
+++ |+|+++.|+|||++|+.. |+++.++++
T Consensus 193 Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~ 226 (394)
T PRK09028 193 PFEMGVDISIQAATKYIVGHSDVMLGTATANEKH 226 (394)
T ss_pred ccccCceEEEEeCCeEecCCCCEEEEEEECCHHH
Confidence 334 599999999999999853 666555544
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-18 Score=151.75 Aligned_cols=206 Identities=14% Similarity=0.184 Sum_probs=132.0
Q ss_pred ceecCCCCC-CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHH
Q 023191 49 LELIPSENF-TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ 127 (286)
Q Consensus 49 i~L~~~e~~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~ 127 (286)
|+|..++++ ++|.+++++.+..... ..|++.....+|+ +.+++++|++. .+++++|+.++.+
T Consensus 2 ~~~~~~~~~~p~~~~~~a~~~~~~~~--------~~Y~~~~~~~~L~----~~la~~~g~~~-----~~v~~~g~~a~~~ 64 (333)
T PRK10534 2 IDLRSDTVTRPSRAMLEAMMAAPVGD--------DVYGDDPTVNALQ----DYAAELSGKEA-----ALFLPTGTQANLV 64 (333)
T ss_pred cccccccCCCCCHHHHHHHHhccCCC--------cccCCCHHHHHHH----HHHHHHhCCCe-----EEEeCchHHHHHH
Confidence 567777775 6889999987654331 1133334555666 66777889876 2555555557766
Q ss_pred HHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc
Q 023191 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG 202 (286)
Q Consensus 128 ~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~ 202 (286)
.+.+++.+||+|+++.+.|...+.. .++...+ ..+.++++.+ +++.+|+++|++++++. ++++|+++
T Consensus 65 ~l~~~~~~gd~vi~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~ 136 (333)
T PRK10534 65 ALLSHCERGEEYIVGQAAHNYLYEA------GGAAVLG-SIQPQPIDAA-ADGTLPLDKVAAKIKPDDIHFARTRLLSLE 136 (333)
T ss_pred HHHHhcCCCCeeEEechhhhhHhcC------CchHHhc-CceEEeecCC-CCCCCCHHHHHHhhcccCcCcccceEEEEe
Confidence 7778899999999887544321110 0122222 1233444445 56899999999998652 58899998
Q ss_pred CCCCCCccCHH---HHHHHHHhcCCEEEEecccccccccc-CCCCCCC-CcceEEEeCCCCCCCCCCceEEEEecchhhh
Q 023191 203 ASAYARLYDYE---RIRKVCNKQKAIMLADMAHISGLVAA-GVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 203 ~~n~g~~~~l~---~I~~ia~~~~~~vivD~a~~~g~~~~-~~~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~ 277 (286)
.+|+|...+.+ +|.++|++|+++|++|+|+..+.... +.....+ .+.|.++.|++|.++.+.||++++++++.+.
T Consensus 137 np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~~i~~ 216 (333)
T PRK10534 137 NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKR 216 (333)
T ss_pred cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCHHHHHH
Confidence 55568766655 55678899999999999976432211 1111001 1256666689998887766778888877655
Q ss_pred hc
Q 023191 278 NK 279 (286)
Q Consensus 278 ~~ 279 (286)
.+
T Consensus 217 ~~ 218 (333)
T PRK10534 217 AR 218 (333)
T ss_pred HH
Confidence 54
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-18 Score=153.71 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=118.5
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| +.++++.|.+. .+.+++|+.++.+++.++++|||+|+++++.|+++..... .+...|
T Consensus 45 g~p~~~~lE----~~la~leg~~~-----~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~-----~l~~~G 110 (397)
T PRK05939 45 GTPTTAALE----AKITKMEGGVG-----TVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFG-----TLRGLG 110 (397)
T ss_pred CCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHH-----HHHhcC
Confidence 345566666 77778888765 5899999888887889999999999999987776643221 122345
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~ 243 (286)
.+++.++ . .|++++++++++ +||+|+++ ++| +|.+.|+++|+++|+++|+++++|++|+.+... +
T Consensus 111 ~~v~~v~--~------~d~e~l~~~l~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~~-~--- 177 (397)
T PRK05939 111 VEVTMVD--A------TDVQNVAAAIRP-NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLF-R--- 177 (397)
T ss_pred CEEEEEC--C------CCHHHHHHhCCC-CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccccc-C---
Confidence 5444443 2 389999999987 99999997 777 778899999999999999999999998766431 1
Q ss_pred CCCC-cceEEEeCCCCCCCCCCc--eEEEE
Q 023191 244 SPFE-YADVVTTTTHKSLRGPRG--AMIFF 270 (286)
Q Consensus 244 ~~~~-~~D~v~~s~~K~l~gp~g--G~l~~ 270 (286)
+.. ++|+++.|+||+++|+.. |.+++
T Consensus 178 -~~~~gaDivv~S~sK~~~g~g~~igg~v~ 206 (397)
T PRK05939 178 -PKDVGASLVINSLSKYIAGHGNALGGAVT 206 (397)
T ss_pred -ccccCCEEEEecCeecccCCCCeEEEEEe
Confidence 222 599999999999988644 44444
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=164.86 Aligned_cols=213 Identities=10% Similarity=0.034 Sum_probs=148.8
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.|+|..++++ +|+.+++++.+.+.. .+ + ..+..++++++++++++.+|++.+. ..+|++++|++
T Consensus 698 ~vI~LsinE~d~ppPp~V~eAi~eal~~-~~--~--------s~g~pdlr~aLa~~la~~~Gv~~d~-~e~IIvt~Gs~e 765 (1082)
T PLN02672 698 SLIHMDVDESFLPVPSAVKASIFESFVR-QN--I--------SESETDPRPSILQFIKSNYGFPTDS-CTEFVYGDTSLA 765 (1082)
T ss_pred CEEEEeCCCCCCCCCHHHHHHHHHHHhh-cC--C--------CCCChHHHHHHHHHHHHHhCcCCCC-CCEEEEeCCHHH
Confidence 56899999884 689999999886643 11 1 0122356788999999999996541 02699999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.++++|||.|+++. |.|+.|...+...|.+++.+|+.. .+++.+|++++++++++.+.++|+++
T Consensus 766 lL~lll~aLl~pGD~VLVp~--------PtY~~Y~~~a~~~Ga~vv~Vpl~~-e~gf~lD~d~Le~al~~~~~~~I~L~n 836 (1082)
T PLN02672 766 LFNKLVLCCVQEGGTLCFPA--------GSNGTYVSAAKFLKANFRRIPTKS-SDGFKLTAKTLASTLETVKKPWVYISG 836 (1082)
T ss_pred HHHHHHHHHcCCCCEEEEeC--------CChHHHHHHHHHcCCEEEEEeccc-ccCCCCCHHHHHHHhccCCCCEEEEEC
Confidence 77668899999999999999 666666667778888777776431 24689999999999865234566665
Q ss_pred CC-C-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCC-CCCC-------Cc-----ceEEEeCCCCCC--CC
Q 023191 203 AS-A-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVI-PSPF-------EY-----ADVVTTTTHKSL--RG 262 (286)
Q Consensus 203 ~~-n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-~~~~-------~~-----~D~v~~s~~K~l--~g 262 (286)
|+ | +|... .+++|+++|++||++||+|++++.-....... ...+ .. .-+++.|++|.+ +|
T Consensus 837 PnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpG 916 (1082)
T PLN02672 837 PTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGG 916 (1082)
T ss_pred cCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHH
Confidence 65 6 67554 47788889999999999999975212111100 0000 00 125688999866 45
Q ss_pred CCceEEEEecc-hhhhhcc
Q 023191 263 PRGAMIFFRKG-VKEINKQ 280 (286)
Q Consensus 263 p~gG~l~~~~~-~~~~~~~ 280 (286)
.+-|+++++++ +.+..++
T Consensus 917 LRIGylIap~~eLi~~l~~ 935 (1082)
T PLN02672 917 HEFGFLALNDSVLIDAFHS 935 (1082)
T ss_pred HHheeEEeCCHHHHHHHHH
Confidence 56699999765 6665543
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-18 Score=154.24 Aligned_cols=153 Identities=22% Similarity=0.238 Sum_probs=113.5
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+++.++++.|.+. .+++++|+.++.+++.++++|||+|+++.+.|++..... .......|..+ +.++.
T Consensus 65 Le~~lA~l~g~~~-----~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~----~~~~~~~g~~v--~~v~~- 132 (405)
T PRK08776 65 LGEALAELEGGAG-----GVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLF----NALAKKGHFAL--ITADL- 132 (405)
T ss_pred HHHHHHHHhCCCc-----eEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHH----HHHHHhcCcEE--EEECC-
Confidence 4488888888743 588888877777788999999999999987776533211 11111223333 33221
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEE
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (286)
.|++++++.+++ +||+|+++ |+| +|...++++|+++|+++|+++|+|++|+.+... .++. ++|+++
T Consensus 133 -----~d~~~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~-----~pl~~gaDivv 201 (405)
T PRK08776 133 -----TDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQ-----KPLEFGADLVL 201 (405)
T ss_pred -----CCHHHHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccC-----CcccccCCEEE
Confidence 388999999987 89999997 777 678899999999999999999999998765421 2233 599999
Q ss_pred eCCCCCCCCCC---ceEEEEec
Q 023191 254 TTTHKSLRGPR---GAMIFFRK 272 (286)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~ 272 (286)
+|+||+|+|+. +|++++++
T Consensus 202 ~S~tK~l~g~~~~~~G~vv~~~ 223 (405)
T PRK08776 202 HSTTKYINGHSDVVGGAVVARD 223 (405)
T ss_pred ecCceeecCCCCceEEEEEeCC
Confidence 99999999885 58777754
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=139.66 Aligned_cols=203 Identities=18% Similarity=0.168 Sum_probs=159.6
Q ss_pred eecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHH
Q 023191 50 ELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVY 129 (286)
Q Consensus 50 ~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l 129 (286)
-|.+|...+|+.|.+|+..-... +.+ +....+-+++.+-++..|....+. .-++.++|..+..+++
T Consensus 20 L~gPGPsnl~~~V~~A~~~~~lg-----h~s-------Pe~~qIm~~v~egikyVFkT~n~~--tf~isgsGh~g~E~al 85 (385)
T KOG2862|consen 20 LLGPGPSNLSGRVQEAMSRPSLG-----HMS-------PEFVQIMDEVLEGIKYVFKTANAQ--TFVISGSGHSGWEAAL 85 (385)
T ss_pred eecCCCcCCCHHHHHhhcCCccc-----cCC-------HHHHHHHHHHHHHHHHHhccCCCc--eEEEecCCcchHHHHH
Confidence 56778778999999999764322 222 344567777888899999885543 3477788888888899
Q ss_pred HHhcCCCCeEEeccCCCCcccCccccccc--cccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc--CCC
Q 023191 130 TALLKPHDRIMALDLPHGGHLSHGYQTDT--KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG--ASA 205 (286)
Q Consensus 130 ~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~--~~n 205 (286)
..+++|||+|++.. .+-...+ ...+..|.++.+++ .+ .+....++++++.+.+|++++++++ .+.
T Consensus 86 ~N~lePgd~vLv~~--------~G~wg~ra~D~~~r~ga~V~~v~--~~-~G~~~~le~i~~~lsqh~p~~vfv~hgdsS 154 (385)
T KOG2862|consen 86 VNLLEPGDNVLVVS--------TGTWGQRAADCARRYGAEVDVVE--AD-IGQAVPLEEITEKLSQHKPKAVFVTHGDSS 154 (385)
T ss_pred HhhcCCCCeEEEEE--------echHHHHHHHHHHhhCceeeEEe--cC-cccCccHHHHHHHHHhcCCceEEEEecCcc
Confidence 99999999999987 3322222 23556777777775 33 4568999999999999999999996 666
Q ss_pred CCCccC-HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhcc
Q 023191 206 YARLYD-YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQ 280 (286)
Q Consensus 206 ~g~~~~-l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~ 280 (286)
+|...| ++.+.++||+|+++++||...+.|.....+..++ +|+......|.+++|.| +.+..++......++
T Consensus 155 TgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewg---VDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~ 228 (385)
T KOG2862|consen 155 TGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWG---VDVAYTGSQKALGAPAGLSIISFSDKALEAIRD 228 (385)
T ss_pred ccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhc---ccEEEecchhhcCCCCCcceeecCHHHHHHHhh
Confidence 898888 7778899999999999999999998887777777 99999999999999999 999998876655553
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-18 Score=155.70 Aligned_cols=163 Identities=13% Similarity=0.046 Sum_probs=116.0
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
++....|| +.++++.|.+. .+++.+|+.|+.+++.++++|||+|+++++.|++.... ........|.
T Consensus 49 nPt~~~lE----~~lA~l~g~~~-----~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~----~~~~~~~~gi 115 (377)
T TIGR01324 49 TLTHFALQ----DAMCELEGGAG-----CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYF----CDIVLKRMGV 115 (377)
T ss_pred CccHHHHH----HHHHHHhCCCc-----EEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHH----HHHHHHhcCc
Confidence 34556666 77777788653 24444454488889999999999999999766543210 0001122343
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
.++.+ +.+ +.+++++.+++ +||+|+++ ++| ++...|+++|+++|+++|+++++|++|+.|....
T Consensus 116 ~v~~~--d~~------~~e~l~~~i~~-~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~----- 181 (377)
T TIGR01324 116 DITYY--DPL------IGEDIATLIQP-NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK----- 181 (377)
T ss_pred EEEEE--CCC------CHHHHHHhcCC-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC-----
Confidence 33322 211 23789998887 89999997 777 6688999999999999999999999999886632
Q ss_pred CCC-cceEEEeCCCCCCCCCC---ceEEEEecchhh
Q 023191 245 PFE-YADVVTTTTHKSLRGPR---GAMIFFRKGVKE 276 (286)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~ 276 (286)
++. ++|+++.|++|+++|+. ||+++++++..+
T Consensus 182 pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~ 217 (377)
T TIGR01324 182 PLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWD 217 (377)
T ss_pred ccccCceEEEecCceeccCCCCceEEEEEeCHHHHH
Confidence 222 59999999999999875 388888776544
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=151.43 Aligned_cols=173 Identities=12% Similarity=0.040 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHHHHCCCCCC-CcceeEEeCCChH-HHHHHHHHh--cCCCCeEEeccCCCCcccCccccccccccccc
Q 023191 89 YIDMAESLCQKRALEAFRLDPE-KWGVNVQSLSGSP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 164 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~-~~~~~v~~~sG~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
...++|+.+.+|+++++|.+.+ .| -.+|+|+| +|+.++.+- ..+...+++++..|.++.. .+.+.
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~---G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~K--------Aa~ll 198 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYW---GYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFK--------AARMY 198 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCe---EEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHH--------HHHhc
Confidence 4678999999999999999763 33 35677777 887655544 2233366667755555543 56677
Q ss_pred eeeeEEEecccCCCCCCCCHHHHHHHhhhcC--CcEEEEc--CCCCCCccCHHHHHHHHHhcCC-----EEEEecccccc
Q 023191 165 SIFFETMPYRLNESTGYIDYDQLEKSATLFR--PKLIVAG--ASAYARLYDYERIRKVCNKQKA-----IMLADMAHISG 235 (286)
Q Consensus 165 g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~--tk~v~i~--~~n~g~~~~l~~I~~ia~~~~~-----~vivD~a~~~g 235 (286)
|.+++.+| .+ +++.+|+++|++.|.+.. |-+|+.+ .+++|.+.|+++|+++|+++|+ |++||+|.+..
T Consensus 199 gi~~~~Vp--~d-~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~ 275 (470)
T PLN02263 199 RMECVKVD--TL-VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGL 275 (470)
T ss_pred CCcceEec--cC-CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhh
Confidence 87777776 44 678999999999997632 4455555 4558899999999999999997 99999996544
Q ss_pred ccccCCCCCCCC---cceEEEeCCCCCCCCCCc-eEEEEecchh
Q 023191 236 LVAAGVIPSPFE---YADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (286)
Q Consensus 236 ~~~~~~~~~~~~---~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (286)
..+.-.....+. .+|.++.++|||++.|.+ |++++|++..
T Consensus 276 ~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~ 319 (470)
T PLN02263 276 MMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI 319 (470)
T ss_pred HhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehhhH
Confidence 443211111233 399999999999999999 9999997643
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.4e-18 Score=152.29 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=122.2
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
.+...+|| +.+++++|.+. .+++.+|+.|+..++.+++++||+|+++.+.|.+...... ..+...|.
T Consensus 39 ~p~~~~le----~~la~l~g~~~-----a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~g~ 105 (369)
T cd00614 39 NPTVDALE----KKLAALEGGEA-----ALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFE----RLLPKLGI 105 (369)
T ss_pred ChhHHHHH----HHHHHHHCCCC-----EEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHH----HHHhhcCe
Confidence 34455666 77777888653 4777778778888999999999999999977766532111 11223454
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
++..+ +.+ |++++++++++ ++++|++. ++| +|...|+++|+++|+++|+++++|++|+.+... .
T Consensus 106 ~~~~v--~~~------d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~-----~ 171 (369)
T cd00614 106 EVTFV--DPD------DPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQ-----R 171 (369)
T ss_pred EEEEe--CCC------CHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcC-----C
Confidence 44333 222 68999999987 89999997 666 678889999999999999999999998776441 2
Q ss_pred CCC-cceEEEeCCCCCCCCCC---ceEEEEec-chhhhhc
Q 023191 245 PFE-YADVVTTTTHKSLRGPR---GAMIFFRK-GVKEINK 279 (286)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~-~~~~~~~ 279 (286)
++. ++|+++.|++|+++|+. ||++++++ ++.+..+
T Consensus 172 ~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~ 211 (369)
T cd00614 172 PLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLR 211 (369)
T ss_pred hhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHH
Confidence 233 59999999999998764 69999987 6555443
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-18 Score=154.14 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=121.1
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+...++| +.++++.|.+. .+++++|+.++.+++.+++++||+|+++.+.|++...... ..+...|.+
T Consensus 64 p~~~~le----~~lA~l~g~~~-----~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~----~~~~~~Gi~ 130 (398)
T PRK08249 64 PTVQAFE----EKVRILEGAEA-----ATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFT----EFLPRMGVD 130 (398)
T ss_pred hHHHHHH----HHHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHH----HHHhhCCeE
Confidence 4445555 77888888754 4888888878887888999999999999977765432211 012234543
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
+..+ + ..|++++++++++ +||+|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+... .+
T Consensus 131 v~~v--d------~~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~-----~~ 196 (398)
T PRK08249 131 VTLC--E------TGDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQ-----NP 196 (398)
T ss_pred EEEc--C------CCCHHHHHHhcCC-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccC-----Cc
Confidence 3222 2 2589999999987 89999997 777 778899999999999999999999998755322 12
Q ss_pred CC-cceEEEeCCCCCCCCCC---ceEEEEecchhhhhc
Q 023191 246 FE-YADVVTTTTHKSLRGPR---GAMIFFRKGVKEINK 279 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~~~~ 279 (286)
+. ++|+++.|++|+++|+. ||+++.++++.+..+
T Consensus 197 l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~ 234 (398)
T PRK08249 197 LALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVY 234 (398)
T ss_pred hhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHH
Confidence 22 59999999999998764 477777766655443
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=153.52 Aligned_cols=150 Identities=17% Similarity=0.167 Sum_probs=113.5
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+...++| +.++++.|.+. .+.+.||+.|+.+++.+++++||+|+++...|++....... .....|.+
T Consensus 64 p~~~~le----~~lA~l~g~~~-----av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~----~l~~~Gi~ 130 (433)
T PRK08134 64 PTVAVLE----ERVAALEGGVG-----AIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHY----TLRRFGIE 130 (433)
T ss_pred hHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHH----HHhhCCeE
Confidence 3455555 88888888765 37777777777778888899999999999888765432211 01124544
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
++.+ +.+ |++++++++++ +||+|++. ++| ++.+.|+++|+++|+++|+++|+|++|+.+.... +
T Consensus 131 v~~v--d~~------d~~~l~~~i~~-~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~-----p 196 (433)
T PRK08134 131 TTFV--KPG------DIDGWRAAIRP-NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLR-----P 196 (433)
T ss_pred EEEE--CCC------CHHHHHHhcCC-CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-----c
Confidence 4433 322 79999999988 99999987 766 6688999999999999999999999998876532 2
Q ss_pred CC-cceEEEeCCCCCCCCCC
Q 023191 246 FE-YADVVTTTTHKSLRGPR 264 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~ 264 (286)
+. ++|++++|+|||++|+.
T Consensus 197 l~~GaD~vv~S~tK~l~g~g 216 (433)
T PRK08134 197 FEHGADLVYHSATKFLGGHG 216 (433)
T ss_pred hhcCCCEEEeccccccCCCC
Confidence 23 59999999999998876
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-18 Score=154.99 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=120.5
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCC-CeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
.+++++++++|++++ +|++|+|++ ++..++++++++| |.|++++ |.|..|...++..|.+++.++
T Consensus 61 ~l~~~~a~~~g~~~~----~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~--------P~y~~y~~~~~~~G~~~~~v~- 127 (351)
T PRK01688 61 AVIENYAAYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCP--------PTYGMYSVSAETIGVEIRTVP- 127 (351)
T ss_pred HHHHHHHHHhCCCHH----HEEEcCCHHHHHHHHHHHhcCCCCCEEEEcC--------CCHHHHHHHHHHcCCEEEEee-
Confidence 356888899999885 599999999 8877889999997 9999999 666666656667787776665
Q ss_pred ccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCCC-c
Q 023191 174 RLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFE-Y 248 (286)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~~-~ 248 (286)
.+ +++.+|++++++.+ + ++++|+++ |+| +|...+.+++.++++.. +++||+|+++.- ..........+. .
T Consensus 128 -~~-~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~-f~~~~s~~~~~~~~ 202 (351)
T PRK01688 128 -TL-DNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIE-FCPQASLAGWLAEY 202 (351)
T ss_pred -cC-CCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhh-cCCCCChHHHHhhC
Confidence 44 45899999999987 4 89999998 666 77888777766666532 689999999632 211100000001 1
Q ss_pred -ceEEEeCCCCCCC--CCCceEEEEecchhhhhcc
Q 023191 249 -ADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 249 -~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~~ 280 (286)
.-+++.|++|+|+ |.+-|++++++++.+..++
T Consensus 203 ~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~ 237 (351)
T PRK01688 203 PHLVILRTLSKAFALAGLRCGFTLANEEVINLLLK 237 (351)
T ss_pred CCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHh
Confidence 2377999999874 4444999998887765554
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-18 Score=152.21 Aligned_cols=165 Identities=19% Similarity=0.215 Sum_probs=118.0
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
....+|+ +.+++++|.+. .+++++|+.++..++.++++|||+|+++.+.|+. .|..+...+...|.+
T Consensus 45 p~~~~L~----~~lA~l~g~~~-----~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~----ty~~~~~~~~~~G~~ 111 (376)
T PRK06460 45 PTVLELT----KKIVELENAEM-----GVAFSSGMGAISTTALALLKPGNSVLVHRDMFGR----SYRFFTDYLKNWGVN 111 (376)
T ss_pred ccHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCc----HHHHHHHHHHhhCcE
Confidence 3444555 78888889865 4888888878777889999999999998755443 233333334455655
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
+..++ .+ +.+.+++.+++ +||+|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+.. .. +
T Consensus 112 v~~~~--~~------~~~~l~~~~~~-~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~---~~--~ 177 (376)
T PRK06460 112 VDASN--PG------SDNIIEKAKSK-RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN---QK--P 177 (376)
T ss_pred EEEEC--CC------CHHHHHHhcCC-CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc---CC--h
Confidence 54443 22 23445555555 89999998 666 77899999999999999999999999865421 11 2
Q ss_pred CC-cceEEEeCCCCCCCCCC---ceEEEEecchhhhhc
Q 023191 246 FE-YADVVTTTTHKSLRGPR---GAMIFFRKGVKEINK 279 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~~~~ 279 (286)
+. ++|+++.|++|+|+|++ +|+++.++++.+..+
T Consensus 178 l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~ 215 (376)
T PRK06460 178 LELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVID 215 (376)
T ss_pred hhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHH
Confidence 22 48999999999998875 699888877665444
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-18 Score=152.74 Aligned_cols=203 Identities=16% Similarity=0.150 Sum_probs=137.9
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +++.+.+++.+...... .| +...+. +++ +.+++++|++++ +|++|+|++
T Consensus 37 ~~i~l~~~~~~~~~~~~~~~al~~~~~~~~--~Y------~~~~g~-~lr----~~ia~~~~~~~~----~i~~t~G~~~ 99 (371)
T PRK05166 37 RIAKLGSNENPLGPSPAVRRAFADIAELLR--LY------PDPQGR-ALR----EAIAARTGVPAD----RIILGNGSED 99 (371)
T ss_pred ceEEcCCCCCCCCCCHHHHHHHHHHHHHhh--cC------CCCcHH-HHH----HHHHHHhCcCHH----HEEEcCCHHH
Confidence 56899988874 68888888876432211 23 322332 444 666777888764 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.+++++||+|++.. |.|..+...+...|.+++.++ .+ +++.+|++++++.+++ ++|+|+++
T Consensus 100 ~l~~~~~~~~~~gd~vli~~--------P~y~~~~~~~~~~g~~~~~v~--~~-~~~~~~~~~l~~~~~~-~~~~v~l~~ 167 (371)
T PRK05166 100 LIAVICRAVLRPGDRVVTLY--------PSFPLHEDYPTMMGARVERVT--VT-PDLGFDLDALCAAVAR-APRMLMFSN 167 (371)
T ss_pred HHHHHHHHhcCCCCEEEEcC--------CChHHHHHHHHHcCCeEEEee--cC-CCCCCCHHHHHHhhhc-CCCEEEEeC
Confidence 77768888999999999998 444443334456676665555 44 4578999999999887 89999887
Q ss_pred CCC-CCCccCHHHHHHHHHh--cCCEEEEeccccccccccCCCCCCC---C--c-ceEEEeCCCCCC--CCCCceEEEE-
Q 023191 203 ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPF---E--Y-ADVVTTTTHKSL--RGPRGAMIFF- 270 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~~~~~~---~--~-~D~v~~s~~K~l--~gp~gG~l~~- 270 (286)
++| +|...+.+++.++++. .++++|+|+++.. ....+..+..+ . + .-+++.|++|.| .|.+-|++++
T Consensus 168 p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~ 246 (371)
T PRK05166 168 PSNPVGSWLTADQLARVLDATPPETLIVVDEAYAE-YAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVS 246 (371)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHH-hcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecC
Confidence 777 7888887777666653 4789999999642 22211111111 1 1 237799999987 4556699876
Q ss_pred ecchhhhhc
Q 023191 271 RKGVKEINK 279 (286)
Q Consensus 271 ~~~~~~~~~ 279 (286)
++++.+..+
T Consensus 247 ~~~l~~~~~ 255 (371)
T PRK05166 247 DPELVGLLD 255 (371)
T ss_pred CHHHHHHHH
Confidence 455655443
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-18 Score=153.05 Aligned_cols=156 Identities=22% Similarity=0.248 Sum_probs=115.2
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+++.+++++|.+. .+++++|+.++.+++.+++++||+|+++++.|++..... ...+...|.+++.+ +.+
T Consensus 66 le~~la~l~g~~~-----~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~----~~~~~~~G~~v~~v--d~~ 134 (390)
T PRK08133 66 FQERLAALEGAEA-----CVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLF----EKIFARFGIETTFV--DLT 134 (390)
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHH----HHHHHHcCcEEEEE--CCC
Confidence 4478888888764 255555555888788899999999999997776654321 11223345444433 322
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEE
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (286)
|++++++++++ +||+|+++ ++| +|...|+++|+++|+++|+++|+|++++.+... .++. ++|+++
T Consensus 135 ------d~~~l~~~i~~-~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~-----~pl~~g~Divv 202 (390)
T PRK08133 135 ------DLDAWRAAVRP-NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQ-----QPLKLGADVVI 202 (390)
T ss_pred ------CHHHHHHhcCc-CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCCcEEE
Confidence 78999999987 99999997 777 778899999999999999999999998655432 1222 589999
Q ss_pred eCCCCCCCCCC---ceEEEEecchh
Q 023191 254 TTTHKSLRGPR---GAMIFFRKGVK 275 (286)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~~~~ 275 (286)
+|+||+++|+. ||+++.++++.
T Consensus 203 ~S~sK~~~g~g~~~GG~vv~~~~~~ 227 (390)
T PRK08133 203 HSATKYLDGQGRVLGGAVVGSKELM 227 (390)
T ss_pred eecceeecCCcceEeEEEEcCHHHH
Confidence 99999997753 48888877643
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-18 Score=154.26 Aligned_cols=196 Identities=11% Similarity=0.050 Sum_probs=136.9
Q ss_pred CceecCCCCCCCHH-HHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChH-H
Q 023191 48 GLELIPSENFTSVS-VMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSP-S 124 (286)
Q Consensus 48 ~i~L~~~e~~~~~~-v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~-a 124 (286)
-++|++|...+++. |++++...+.... . . .....++-+.+++.+++++|++.+. +|++++ +++ +
T Consensus 13 ~~~f~~Gp~~~~~~~v~~a~~~~~~~~~------h---r-~~~f~~~~~~~r~~l~~l~~~~~~~---~v~~~~gs~T~~ 79 (378)
T PRK03080 13 DPRFSSGPCKKRPGWQLEALADALLGRS------H---R-QKPVKALLKRVIEGTRELLSLPEGY---EVGIVPGSDTGA 79 (378)
T ss_pred CCCcCCCCcCCChHHHHHHHHhhhcccC------c---C-CHHHHHHHHHHHHHHHHHhCCCCCc---eEEEECCchHHH
Confidence 46788887777887 9999986443210 0 1 1234567778899999999985332 477664 445 7
Q ss_pred HHHHHHHhcCC-CCeEEeccCCCCcccCcccccccccccccee-eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 125 NFQVYTALLKP-HDRIMALDLPHGGHLSHGYQTDTKKISAVSI-FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 125 ~~~~l~a~~~~-Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
+.+++.+++++ ++.|+. ..+|++.+.. . ..+..|. +++.++. + .+..+|+++++ . +++|.++
T Consensus 80 ~~~~~~~l~~~~~~~vi~-~g~f~~~~~~---~---~~~~~g~~~v~~~~~--~-~g~~~d~~~i~----~--~~~V~~~ 143 (378)
T PRK03080 80 WEMALWSLLGARRVDHLA-WESFGSKWAT---D---VVKQLKLEDPRVLEA--D-YGSLPDLSAVD----F--DRDVVFT 143 (378)
T ss_pred HHHHHHhcCCCCcceEEE-eCHHHHHHHH---H---HHhhcCCCCceEecc--C-CCCCCCHhhcC----C--CCCEEEE
Confidence 77688888875 555555 4566653221 0 0122344 5555543 3 44577877643 2 5667775
Q ss_pred -CC-CCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 203 -AS-AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 203 -~~-n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
.+ .+|...|+++|++ +++|+++++|++|++|..+.++.. +|++++|+||||+||.| |++++++++.+..+
T Consensus 144 h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~-----iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~ 216 (378)
T PRK03080 144 WNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK-----LDVYTFSWQKVLGGEGGHGMAILSPRAVERLE 216 (378)
T ss_pred ecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH-----CcEEEEehhhhCCCCCceEEEEECHHHHHhhh
Confidence 44 4889999999999 889999999999999999877653 79999999999999999 99999988765443
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=153.58 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=115.8
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+++.++++.|.+. .|.++||++++.+++.+++++||+|++++..|+++...... .+...|.+++.+ + +
T Consensus 74 le~~la~l~g~~~-----~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~----~l~~~Gi~v~~v--d-~ 141 (437)
T PRK05613 74 LENRIASLEGGVH-----AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLV----TLNRLGIEVTFV--E-N 141 (437)
T ss_pred HHHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHH----HHHhcCeEEEEE--C-C
Confidence 4488888888853 59999999977778888899999999999888876322111 112345444433 2 2
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEe
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTT 254 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~ 254 (286)
. .|++++++++++ +||+|++. ++| ++.+.|+++|+++|+++|+++|+|++|+.|..... ... |+|++++
T Consensus 142 -~---~d~e~l~~~l~~-~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p-~~~---GaDivv~ 212 (437)
T PRK05613 142 -P---DDPESWQAAVQP-NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRP-LEL---GADVVVA 212 (437)
T ss_pred -C---CCHHHHHHhCCc-cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccCh-HHh---CCCEEEe
Confidence 1 289999999988 89988885 666 57889999999999999999999999977654211 112 5999999
Q ss_pred CCCCCCCCCC---ceEEEEec
Q 023191 255 TTHKSLRGPR---GAMIFFRK 272 (286)
Q Consensus 255 s~~K~l~gp~---gG~l~~~~ 272 (286)
|+||+++|+. ||+++.+.
T Consensus 213 S~~K~l~G~gd~~gG~vv~~~ 233 (437)
T PRK05613 213 SLTKFYTGNGSGLGGVLIDGG 233 (437)
T ss_pred eccceecCCCcceeEEEEecC
Confidence 9999998764 36566443
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=151.47 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeee
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 168 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 168 (286)
....|| +.++++.|.+. .+.++||+.++.+++ ++++|||+|+++++.|++.+.... ..+...|.++
T Consensus 51 ~~~~Le----~~la~l~g~~~-----al~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~----~~~~~~gi~v 116 (380)
T PRK06176 51 TRFALE----ELIADLEGGVK-----GFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFD----KVLVKNGLSC 116 (380)
T ss_pred hHHHHH----HHHHHHhCCCC-----EEEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHH----HHHHhcCeEE
Confidence 345555 88888888765 489999988766444 678999999999977765543221 1122344333
Q ss_pred EEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC
Q 023191 169 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 246 (286)
Q Consensus 169 ~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~ 246 (286)
+.+ + ..|++++++++++ +|++|+++ |+| +|...|+++|.++|+++|+++|+|++++.+... .++
T Consensus 117 ~~v--d------~~d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~-----~p~ 182 (380)
T PRK06176 117 TII--D------TSDLSQIKKAIKP-NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQ-----NPL 182 (380)
T ss_pred EEc--C------CCCHHHHHHhcCc-CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccC-----Ccc
Confidence 322 2 1389999999987 89999996 777 678889999999999999999999998765332 122
Q ss_pred C-cceEEEeCCCCCCCCCC---ceEEEEec
Q 023191 247 E-YADVVTTTTHKSLRGPR---GAMIFFRK 272 (286)
Q Consensus 247 ~-~~D~v~~s~~K~l~gp~---gG~l~~~~ 272 (286)
. ++|++++|++|+++||. ||++.+++
T Consensus 183 ~~gaDivv~S~tK~l~g~~d~~gG~vv~~~ 212 (380)
T PRK06176 183 LLGADIVVHSGTKYLGGHSDVVAGLVTTNN 212 (380)
T ss_pred ccCCCEEEecCceeccCCccceeeEEEecH
Confidence 2 59999999999999875 58888765
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=151.63 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeee
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 168 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 168 (286)
...+++ +.+++++|.+. .+++.+|+.++.+++.+++++||+|+++.+.|++.+... ...+...|.++
T Consensus 55 ~~~~le----~~la~l~g~~~-----~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~----~~~~~~~g~~v 121 (380)
T TIGR01325 55 TVAAFE----ERIAALEGAER-----AVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFI----SEILPRFGIEV 121 (380)
T ss_pred hHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHH----HHHHHHhCCEE
Confidence 345555 77888888854 366666666888788899999999999887665543211 11222345444
Q ss_pred EEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC
Q 023191 169 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 246 (286)
Q Consensus 169 ~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~ 246 (286)
+.++ .+ |++++++.+++ ++|+|+++ ++| +|...|+++|.++|+++|+++|+|++++.+... .++
T Consensus 122 ~~v~--~~------d~~~l~~~i~~-~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~-----~pl 187 (380)
T TIGR01325 122 SFVD--PT------DLNAWEAAVKP-NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQ-----QPL 187 (380)
T ss_pred EEEC--CC------CHHHHHHhcCC-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-----Cch
Confidence 4342 22 78999998887 89999997 666 678889999999999999999999998654322 123
Q ss_pred C-cceEEEeCCCCCCCCCC---ceEEEEecchhhhhc
Q 023191 247 E-YADVVTTTTHKSLRGPR---GAMIFFRKGVKEINK 279 (286)
Q Consensus 247 ~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~~~~ 279 (286)
. ++|+++.|++|+++|+. ||++++++++.+..+
T Consensus 188 ~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~ 224 (380)
T TIGR01325 188 KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVA 224 (380)
T ss_pred hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHH
Confidence 3 59999999999998863 488888877655443
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-17 Score=144.00 Aligned_cols=212 Identities=16% Similarity=0.121 Sum_probs=139.9
Q ss_pred ceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 49 LELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 49 i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
++|..+.++ +++.++.++.+.-.. .....|....+..++++.+++++...++..... .++++++|++ ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~~~~~t~a~ 72 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAAALR------AGLLGYYPDPGLPELREAIAEWLGRRGGVDVPP--EEIVVTNGAQEAL 72 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhc------cCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCc--ceEEEecCcHHHH
Confidence 356555553 466666666541111 011223445677889988888888877642222 3588888888 87
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCH--HHHHHHhhhcCCcEEEEc-
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY--DQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~--e~l~~~i~~~~tk~v~i~- 202 (286)
..++.++.++||+|+++++.|.++.. .+...|..++.++ .+ +++..+. +.+++.+.+ ++++|+++
T Consensus 73 ~~~~~~~~~~g~~vl~~~~~~~~~~~--------~~~~~~~~~~~i~--~~-~~~~~~~~~~~~~~~~~~-~~~~v~i~~ 140 (350)
T cd00609 73 SLLLRALLNPGDEVLVPDPTYPGYEA--------AARLAGAEVVPVP--LD-EEGGFLLDLELLEAAKTP-KTKLLYLNN 140 (350)
T ss_pred HHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCCEEEEEe--cc-cccCCccCHHHHHhhcCc-cceEEEEEC
Confidence 87888899999999999976666543 3445565555565 33 3333333 666666665 89999997
Q ss_pred CCC-CCCccCHH---HHHHHHHhcCCEEEEeccccccccccCCC---C-CCCCcceEEEeCCCCCCC--CCCceEEEEec
Q 023191 203 ASA-YARLYDYE---RIRKVCNKQKAIMLADMAHISGLVAAGVI---P-SPFEYADVVTTTTHKSLR--GPRGAMIFFRK 272 (286)
Q Consensus 203 ~~n-~g~~~~l~---~I~~ia~~~~~~vivD~a~~~g~~~~~~~---~-~~~~~~D~v~~s~~K~l~--gp~gG~l~~~~ 272 (286)
++| +|...|++ +|.++|+++|+++|+|++|+.+....... . ....+.|+++.|+||+++ |++.|++++++
T Consensus 141 ~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~ 220 (350)
T cd00609 141 PNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPP 220 (350)
T ss_pred CCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCH
Confidence 555 67777655 55589999999999999987654432211 1 111147899999999986 34459999998
Q ss_pred -chhhhhcc
Q 023191 273 -GVKEINKQ 280 (286)
Q Consensus 273 -~~~~~~~~ 280 (286)
++.+..+.
T Consensus 221 ~~~~~~~~~ 229 (350)
T cd00609 221 EELLERLKK 229 (350)
T ss_pred HHHHHHHHH
Confidence 67766553
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=151.22 Aligned_cols=163 Identities=11% Similarity=0.026 Sum_probs=121.3
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| +.++.+-|.+. .+++.||+.|+.+++.+++++||+|++++..|++...... ....-.|
T Consensus 60 ~nPt~~~le----~~la~LEg~~~-----a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~----~~l~~~G 126 (395)
T PRK08114 60 GTLTHFSLQ----EAMCELEGGAG-----CALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCS----KILSKLG 126 (395)
T ss_pred CChhHHHHH----HHHHHHhCCCe-----EEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHH----HHHHhcC
Confidence 445566677 67777777654 4888888888877888999999999999866665543221 1112235
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcC--CEEEEeccccccccccCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQK--AIMLADMAHISGLVAAGV 241 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~--~~vivD~a~~~g~~~~~~ 241 (286)
.++..+. ..|.+++++++++ +||+|++. ++| ++.+.|+++|+++||+++ +++++|++++.|.. .+.
T Consensus 127 i~v~~vd--------~~d~~~l~~~l~~-~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~p 196 (395)
T PRK08114 127 VTTTWFD--------PLIGADIAKLIQP-NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKA 196 (395)
T ss_pred cEEEEEC--------CCCHHHHHHhcCC-CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCH
Confidence 4444332 1378999999987 89999997 777 678999999999999984 99999999988765 333
Q ss_pred CCCCCCcceEEEeCCCCCCCCCC--c-eEEEEecch
Q 023191 242 IPSPFEYADVVTTTTHKSLRGPR--G-AMIFFRKGV 274 (286)
Q Consensus 242 ~~~~~~~~D~v~~s~~K~l~gp~--g-G~l~~~~~~ 274 (286)
... |+|+++.|+|||++|+. + |+++.++++
T Consensus 197 l~~---GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~ 229 (395)
T PRK08114 197 LDF---GIDISIQAGTKYLVGHSDAMIGTAVANARC 229 (395)
T ss_pred HHc---CCcEEEEcCcccccCCCcceeEEEEcCHHH
Confidence 333 49999999999999994 3 877776654
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-18 Score=154.21 Aligned_cols=165 Identities=22% Similarity=0.291 Sum_probs=123.2
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
+..+.+++.||++. ..++++|+| ++.++++++++|||+|++++..|.|.+. ++.+.|+.++.++-.
T Consensus 70 eAe~~aA~~fGAd~-----t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~--------alil~ga~Pvyi~p~ 136 (417)
T PF01276_consen 70 EAEELAARAFGADK-----TFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYN--------ALILSGAIPVYIPPE 136 (417)
T ss_dssp HHHHHHHHHHTESE-----EEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHH--------HHHHHTEEEEEEEEE
T ss_pred HHHHHHHHhcCCCe-----EEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHH--------HHHHcCCeEEEecCC
Confidence 35588999999986 588999999 9999999999999999999999998865 445777766666533
Q ss_pred cCCCC---CCCCH-----HHHHHHhhhc-CCcE---EEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCC
Q 023191 175 LNEST---GYIDY-----DQLEKSATLF-RPKL---IVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 241 (286)
Q Consensus 175 ~~~~~---~~~d~-----e~l~~~i~~~-~tk~---v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~ 241 (286)
+.+. +.+++ +.++++++++ ..|. ++++.++ .|.+.++++|+++|++++++|++|+||++......+
T Consensus 137 -~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~l 215 (417)
T PF01276_consen 137 -DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPL 215 (417)
T ss_dssp -E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGG
T ss_pred -ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCC
Confidence 3221 24556 9999999863 2244 8887566 789999999999999999999999999876554444
Q ss_pred CCCCCC-cce-------EEEeCCCCCCCCCCc-eEEEEecch
Q 023191 242 IPSPFE-YAD-------VVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 242 ~~~~~~-~~D-------~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
....+. ++| +++.|+||++++... ++|..+++.
T Consensus 216 p~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~ 257 (417)
T PF01276_consen 216 PRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDR 257 (417)
T ss_dssp GTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCC
T ss_pred ccchhhccCccccccceeeeechhhcccccccceEEEecCCC
Confidence 444343 688 999999999998766 999998875
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=146.81 Aligned_cols=204 Identities=14% Similarity=0.163 Sum_probs=132.7
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +++.+.+++.+.+.+.... .....|++..+..++++++++++.+. +++++ +|++|+|++
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~Y~p~~g~~~lr~aia~~~~~~-~~~~d----~I~it~Ga~~ 106 (402)
T TIGR03542 34 DIIRLGIGDTTQPLPASVIEAFHNAVDELASE--ETFRGYGPEQGYPFLREAIAENDYRG-RIDPE----EIFISDGAKC 106 (402)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhccccc--ccccCCCCCCCCHHHHHHHHHHHHhc-CCCHH----HEEECCCcHH
Confidence 46889888885 5888889888776542100 01122445567788887777765322 46664 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee-----------eeEEEecccCC-CCCCCCHHHHHHHh
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI-----------FFETMPYRLNE-STGYIDYDQLEKSA 191 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~~~v~~~~~~-~~~~~d~e~l~~~i 191 (286)
++.. +..++.+||+|++++|.|..+ ...+...|. .+..++ .+. +++.+|+++
T Consensus 107 al~~-l~~l~~~gd~Vlv~~P~y~~~--------~~~~~~~g~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~----- 170 (402)
T TIGR03542 107 DVFR-LQSLFGSDNTVAVQDPVYPAY--------VDSNVMAGRAGVLDDDGRYSKITYLP--CTKENNFIPDLPE----- 170 (402)
T ss_pred HHHH-HHHhcCCCCEEEEeCCCCcch--------HHHHHHcCCccccccccccceEEEee--cchhhCCCCCccc-----
Confidence 7764 566779999999999555443 334445554 444444 432 245555432
Q ss_pred hhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC---CCc---ceEEEeCCCCCC
Q 023191 192 TLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---FEY---ADVVTTTTHKSL 260 (286)
Q Consensus 192 ~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~---~~~---~D~v~~s~~K~l 260 (286)
.+ ++++|+++ |+| +|...+ +++|+++|++|+++||+|+++.. ....+..+.+ +.. .-+++.|++|.|
T Consensus 171 ~~-~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~-~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~ 248 (402)
T TIGR03542 171 EP-KIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSA-FISDPSLPHSIFEIPGAKECAIEFRSFSKTA 248 (402)
T ss_pred cC-CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhh-hccCCCCCcchhhCCCCcccEEEEecCcccc
Confidence 13 78999997 666 776665 78899999999999999999653 2221111111 111 236689999987
Q ss_pred C--CCCceEEEEecchh
Q 023191 261 R--GPRGAMIFFRKGVK 275 (286)
Q Consensus 261 ~--gp~gG~l~~~~~~~ 275 (286)
+ |.|-|++++++++.
T Consensus 249 g~pGlRiG~~i~~~~l~ 265 (402)
T TIGR03542 249 GFTGVRLGWTVVPKELT 265 (402)
T ss_pred CCCCcceEEEEecHHHh
Confidence 4 44559999987754
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=148.85 Aligned_cols=216 Identities=14% Similarity=0.131 Sum_probs=144.3
Q ss_pred cCceecCCCCCC------CHHHHHHhcc-ccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcce-eEEe
Q 023191 47 KGLELIPSENFT------SVSVMQAVGS-VMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGV-NVQS 118 (286)
Q Consensus 47 ~~i~L~~~e~~~------~~~v~~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~v~~ 118 (286)
+.|+|..+++.. ++.+++++.+ ...... ...|+...+..++++++.+++.+..|.+.+. . +|++
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~--~~~i~~ 73 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSS------FLGYPPPQGYPELREAIADFLGRRYGVPVDP--EANILV 73 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTG------CTSSTCTTHHHHHHHHHHHHHHHHHTHHTTG--GEGEEE
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccc------cccCCCchhhHHHHHHHHHHhhhccCccccc--ceEEEE
Confidence 357887777643 3555555544 121111 1224666788899988888888666663332 3 6999
Q ss_pred CCChH-HHHHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--
Q 023191 119 LSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-- 194 (286)
Q Consensus 119 ~sG~~-a~~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-- 194 (286)
++|+. ++..++..+ .++||.|++++ |.|+.+...+...|..+..+++... +++.+|++++++.+++.
T Consensus 74 ~~G~~~~~~~~~~~~~~~~~~~vlv~~--------P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~ 144 (363)
T PF00155_consen 74 TSGAQAALFLLLRLLKINPGDTVLVPD--------PCYPSYIEAARLLGAEVIPVPLDSE-NDFHLDPEALEEALDELPS 144 (363)
T ss_dssp ESHHHHHHHHHHHHHHSSTTSEEEEEE--------SSSTHHHHHHHHTTSEEEEEEEEET-TTTEETHHHHHHHHHTSHT
T ss_pred ecccccchhhhhhcccccccccceecC--------CccccccccccccCceeeecccccc-ccccccccccccccccccc
Confidence 99999 666566777 78999999999 5555555566677877766665433 57899999999998863
Q ss_pred ---CCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccC-CC--CCCCC-cc-eEEEeCCCCCCC
Q 023191 195 ---RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG-VI--PSPFE-YA-DVVTTTTHKSLR 261 (286)
Q Consensus 195 ---~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~--~~~~~-~~-D~v~~s~~K~l~ 261 (286)
++++|+++ ++| +|...+ +++|+++|++|++++|+|++|........ .. ...+. +. .+++.|++|.|+
T Consensus 145 ~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g 224 (363)
T PF00155_consen 145 KGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFG 224 (363)
T ss_dssp TTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTT
T ss_pred cccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccc
Confidence 45788887 666 776665 45556669999999999999765444311 00 01111 12 378999999874
Q ss_pred CC--CceEEEEecchhhhhc
Q 023191 262 GP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 262 gp--~gG~l~~~~~~~~~~~ 279 (286)
.| +.|++++++++.+..+
T Consensus 225 ~~GlRvG~i~~~~~~~~~l~ 244 (363)
T PF00155_consen 225 LPGLRVGYIVAPPELIERLR 244 (363)
T ss_dssp SGGGTEEEEEEEHHHHHHHH
T ss_pred ccccccccccchhhhhhhhh
Confidence 33 3499999887776554
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=151.47 Aligned_cols=168 Identities=13% Similarity=0.060 Sum_probs=118.1
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
.+...+|| +.+++++|.+. .+++.+|+.++.+++.+++++||+|+++.+.|+++....... .....|.
T Consensus 75 ~Pt~~~LE----~~lA~l~g~~~-----~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~---~~~~~G~ 142 (418)
T PLN02242 75 NPTVLNLG----RQMAALEGTEA-----AYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHF---LPRKCNI 142 (418)
T ss_pred ChhHHHHH----HHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHh---hhhccCc
Confidence 34455666 88888899875 255555555888899999999999999996665443211100 0122443
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
.+ ..++. .|++++++++++.+||+|+++ ++| +|.+.++++|+++|++||++||+|++|..... +....
T Consensus 143 ~~--~~~d~------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~--~~~~~ 212 (418)
T PLN02242 143 TT--TFVDI------TDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVL--SPARL 212 (418)
T ss_pred eE--EEcCC------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCC--CHHHc
Confidence 33 22221 389999999976349999997 777 77888999999999999999999999753221 11111
Q ss_pred CCCcceEEEeCCCCCCCCCC---ceEEEEecchhhhhc
Q 023191 245 PFEYADVVTTTTHKSLRGPR---GAMIFFRKGVKEINK 279 (286)
Q Consensus 245 ~~~~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~~~~ 279 (286)
++|+++.|++|+++|+. ||++++++++.+..+
T Consensus 213 ---g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~ 247 (418)
T PLN02242 213 ---GADVVVHSISKFISGGADIIAGAVCGPAELVNSMM 247 (418)
T ss_pred ---CCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHH
Confidence 48999999999997653 699998877665544
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-17 Score=150.16 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+....|+ +.++++.|.+. .+++.+|+.++.+++.+++++||+|+++++.|++.+... ...+...|.+
T Consensus 64 p~~~~Le----~~lA~leg~~~-----al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~----~~~~~~~Gv~ 130 (431)
T PRK08248 64 PTTDVFE----KRIAALEGGIG-----ALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLF----AHTLPKLGIT 130 (431)
T ss_pred chHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHH----HHHHHhCCEE
Confidence 3455555 77888888654 477777777887788899999999999997776554322 1122345654
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
++.+ +. .|++++++++++ ++++|+++ ++| +|...|+++|+++|+++|+++|+|++++.+... .+
T Consensus 131 v~~v--d~------~d~e~l~~ai~~-~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~-----~p 196 (431)
T PRK08248 131 VKFV--DP------SDPENFEAAITD-KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLL-----RP 196 (431)
T ss_pred EEEE--CC------CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccC-----Ch
Confidence 4444 22 389999999987 89999997 667 778899999999999999999999997644322 22
Q ss_pred CC-cceEEEeCCCCCCCCCCc--eEEEE
Q 023191 246 FE-YADVVTTTTHKSLRGPRG--AMIFF 270 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~g--G~l~~ 270 (286)
+. ++|+++.|+||+++|+.. |.+++
T Consensus 197 l~~gaDivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 197 IEHGADIVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred hHcCCCEEEEcCccccCCCCCceEEEEE
Confidence 23 599999999999998853 44444
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-17 Score=149.50 Aligned_cols=222 Identities=13% Similarity=0.086 Sum_probs=138.4
Q ss_pred HcCceecCCCCCC----CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 46 WKGLELIPSENFT----SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 46 ~~~i~L~~~e~~~----~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
.+.++|..+.+.. .+.+.+++.+.+...- .......|+...+..+|++++.+++.+.+|++.+. .+|++|+|
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~--~~I~it~G 105 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGK--LTEALGNYDGPQGKDELIEALAALLNERYGWNISP--QNIALTNG 105 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCcc--cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCh--hhEEEccC
Confidence 3568998776632 2355666655543310 00111235666778899999999999888764332 36999999
Q ss_pred hH-HHHHHHHHhcC-----CCCeEEe-ccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc
Q 023191 122 SP-SNFQVYTALLK-----PHDRIMA-LDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF 194 (286)
Q Consensus 122 ~~-a~~~~l~a~~~-----~Gd~Vl~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~ 194 (286)
++ ++.+++.++++ +||.|++ .+|.|+.+...... .+ .+.+.....++++.+...+.+|+++++ +.+
T Consensus 106 a~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~- 178 (416)
T PRK09440 106 SQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLE---ED-LFVSYRPNIELLPEGQFKYHVDFEHLH--IDE- 178 (416)
T ss_pred hHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhc---cC-ceeecccccccccccccccCCCHHHcc--cCC-
Confidence 99 88778888885 6999999 68666554321100 00 011212223333221113679999997 344
Q ss_pred CCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccccccc---CCCCCCCCcceEEEeCCCCC-CCCCCc
Q 023191 195 RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA---GVIPSPFEYADVVTTTTHKS-LRGPRG 265 (286)
Q Consensus 195 ~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~~~~~~~~~D~v~~s~~K~-l~gp~g 265 (286)
++++++++ |+| +|...+ +++|+++|++|+++||+|+++....... +..+ .....-+++.|++|+ +.|.+.
T Consensus 179 ~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~-~~~~~vI~~~SfSK~~~pGlRi 257 (416)
T PRK09440 179 DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATP-LWNPNIILCMSLSKLGLPGVRC 257 (416)
T ss_pred CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCc-cccCCeEEEecccccCCCcceE
Confidence 78899987 766 776655 7788899999999999999975211000 1100 001133778999995 345556
Q ss_pred eEEEEecchhhhhc
Q 023191 266 AMIFFRKGVKEINK 279 (286)
Q Consensus 266 G~l~~~~~~~~~~~ 279 (286)
|++++++++.+...
T Consensus 258 G~~i~~~~l~~~~~ 271 (416)
T PRK09440 258 GIVIADEEIIEALS 271 (416)
T ss_pred EEEeCCHHHHHHHH
Confidence 99999887765544
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-17 Score=149.58 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=113.6
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+.+.++++.|.+. .+.+.+|+.++.+++.++++|||+|+++.+.|++...... ..+...|..++.+ +.
T Consensus 68 le~~lA~l~g~~~-----al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~----~~~~~~G~~v~~v--d~- 135 (427)
T PRK05994 68 LEERVAALEGGTA-----ALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFG----HAFKSFGWQVRWA--DA- 135 (427)
T ss_pred HHHHHHHHhCCCc-----EEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHH----HHHHhcCcEEEEE--CC-
Confidence 3378888888765 4888888888888999999999999999987776533211 1112345444333 22
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEE
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (286)
.|++++++++++ +||+|+++ ++| +|.+.|+++|.++|+++|+++|+|++|+.+... .++. ++|+++
T Consensus 136 -----~d~~~l~~ai~~-~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~-----~pl~~gaDivv 204 (427)
T PRK05994 136 -----DDPASFERAITP-RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLI-----RPIEHGADIVV 204 (427)
T ss_pred -----CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccC-----CccccCCcEEE
Confidence 278999999987 89999997 777 678889999999999999999999999866432 2233 599999
Q ss_pred eCCCCCCCCCCc---eEEE
Q 023191 254 TTTHKSLRGPRG---AMIF 269 (286)
Q Consensus 254 ~s~~K~l~gp~g---G~l~ 269 (286)
.|+||+++|+.+ |+++
T Consensus 205 ~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 205 HSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred EcCccccCCCCCcEEEEEE
Confidence 999999988764 5444
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-17 Score=153.47 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=122.6
Q ss_pred cchHHHHHHHHHHHHHHHCCCCC-----------CCcceeEEeCCChH-HHHHHHHHh----cC----------------
Q 023191 87 NEYIDMAESLCQKRALEAFRLDP-----------EKWGVNVQSLSGSP-SNFQVYTAL----LK---------------- 134 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~-----------~~~~~~v~~~sG~~-a~~~~l~a~----~~---------------- 134 (286)
++...++|+.+.+|++++++..+ +. ..-.+++|++ +++.++.+- +.
T Consensus 124 spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~--~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~ 201 (522)
T TIGR03799 124 SKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADH--SLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA 201 (522)
T ss_pred CcchHHHHHHHHHHHHHHhccCcccchhhcccCCCC--CCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence 45567999999999999985211 11 1245677877 777654432 11
Q ss_pred ------CCCeEEeccCCCCcccCcccccccccccccee---eeEEEecccCCCCCCCCHHHHHHHhhh---cCCcEEEEc
Q 023191 135 ------PHDRIMALDLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVAG 202 (286)
Q Consensus 135 ------~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~tk~v~i~ 202 (286)
++..|++++.+|.++.. .+.+.|. .++.+| ++ +++.+|+++|++.+.+ .+++.+.+.
T Consensus 202 ~~~~~~~~~~v~~S~~~H~S~~k--------aa~~lglg~~~v~~vp--~d-~~g~~d~~~L~~~i~~~~~~g~~~~~vv 270 (522)
T TIGR03799 202 LKHYGYDGLAILVSERGHYSLGK--------AADVLGIGRDNLIAIK--TD-ANNRIDVDALRDKCAELAEQNIKPLAIV 270 (522)
T ss_pred hhhccCCceEEEECCCchHHHHH--------HHHHcCCCcccEEEEE--eC-CCCcCCHHHHHHHHHHHHHCCCCcEEEE
Confidence 23467778877777643 2334443 355565 45 5689999999998863 245555442
Q ss_pred ----CCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC---CCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 203 ----ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 203 ----~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
.+.+|.+.|+++|+++|+++|+|+++|+||+.+....+... ..++++|++++++|||+++|.| |++++|+.
T Consensus 271 ataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~ 349 (522)
T TIGR03799 271 GVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDP 349 (522)
T ss_pred EEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCH
Confidence 33488999999999999999999999999887665433211 2233599999999999999999 99999874
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=148.79 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=110.9
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
++++++++.|.+ .+++++|++ ++..++.++++|||+|+++++.|++....... .....+..+ .. +
T Consensus 57 L~~~lA~l~g~~------~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~----~~~~~gi~v--~~--v 122 (386)
T PRK08045 57 VQRALAELEGGA------GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDS----LAKRGCYRV--LF--V 122 (386)
T ss_pred HHHHHHHHhCCC------eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHH----HHhhCCeEE--EE--e
Confidence 447888888853 266666666 88778889999999999999777654322110 011112122 22 1
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEE
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVV 252 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v 252 (286)
+ ..|++++++.+++ +||+|+++ |+| +|...|+++|.++|+++|+++++|+++..+... .++. ++|++
T Consensus 123 d----~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~-----~pl~~gaDiv 192 (386)
T PRK08045 123 D----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQ-----NPLALGADLV 192 (386)
T ss_pred C----CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccC-----CchhhCCCEE
Confidence 2 2589999999987 89999998 666 678889999999999999999999998765432 2233 59999
Q ss_pred EeCCCCCCCCCC---ceEEEEec
Q 023191 253 TTTTHKSLRGPR---GAMIFFRK 272 (286)
Q Consensus 253 ~~s~~K~l~gp~---gG~l~~~~ 272 (286)
+.|+|||++|+. +|++++++
T Consensus 193 v~S~tK~l~G~~d~~~G~vi~~~ 215 (386)
T PRK08045 193 LHSCTKYLNGHSDVVAGVVIAKD 215 (386)
T ss_pred EeecceeccCCCCceeEEEEeCc
Confidence 999999999987 47777754
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-17 Score=147.42 Aligned_cols=178 Identities=17% Similarity=0.137 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH--HHHHHHHHhc--C-CCCeEEeccCCCCcccCcccccccccccc
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP--SNFQVYTALL--K-PHDRIMALDLPHGGHLSHGYQTDTKKISA 163 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~--a~~~~l~a~~--~-~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (286)
....+...+.+++++++|++... ..++++|++ ++.+++.++- . +||+|+++...|.+... .+.+
T Consensus 102 ~~~~l~~~~e~~~~~~~G~~~~~---~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~k--------Ai~~ 170 (444)
T TIGR03531 102 LLYKLTNKLVKDFLKLLGLRSIK---SAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIK--------AIST 170 (444)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC---EEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHH--------HHHH
Confidence 35677778889999999997321 244445555 5554555542 2 69999999977766654 4567
Q ss_pred ceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCCCC--CccCHHHHHHHHHhcCCEEEEeccccccccc
Q 023191 164 VSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASAYA--RLYDYERIRKVCNKQKAIMLADMAHISGLVA 238 (286)
Q Consensus 164 ~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n~g--~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~ 238 (286)
.|.+++.++...+++++.+|+++|+++|++. ++++++++ ++.++ ...|+++|+++|++||+++|+|+||+.+...
T Consensus 171 ~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~ 250 (444)
T TIGR03531 171 AGFEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNK 250 (444)
T ss_pred cCCeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChh
Confidence 8877777764345567899999999999862 34555555 44333 6889999999999999999999998865432
Q ss_pred cC-CCCCCCC--cceEEEeCCCCCCCCCCc-eEEEEec-chhhh
Q 023191 239 AG-VIPSPFE--YADVVTTTTHKSLRGPRG-AMIFFRK-GVKEI 277 (286)
Q Consensus 239 ~~-~~~~~~~--~~D~v~~s~~K~l~gp~g-G~l~~~~-~~~~~ 277 (286)
.. +....+. .+|++++|+||++..|.+ |++++++ ++.+.
T Consensus 251 ~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~ 294 (444)
T TIGR03531 251 YMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQE 294 (444)
T ss_pred hhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHH
Confidence 11 1111122 379999999999988765 7777855 44433
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-17 Score=152.51 Aligned_cols=177 Identities=11% Similarity=0.060 Sum_probs=121.8
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcc---eeEEeCCChH-HHHHHHHHh----cC------CCC-eEEeccCCCCcccC
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWG---VNVQSLSGSP-SNFQVYTAL----LK------PHD-RIMALDLPHGGHLS 151 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~v~~~sG~~-a~~~~l~a~----~~------~Gd-~Vl~~~~~~~~~~~ 151 (286)
++...++|+.+.+|+++++|.+.+.|. ..-++|+|++ +++.++.+- ++ ... .|++++..|.+...
T Consensus 117 sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~K 196 (490)
T PLN02880 117 SPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQK 196 (490)
T ss_pred CcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHH
Confidence 355779999999999999999753210 1245567766 776544332 11 112 33445544444432
Q ss_pred ccccccccccccceee---eEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc--CCCCCCccCHHHHHHHHHh
Q 023191 152 HGYQTDTKKISAVSIF---FETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG--ASAYARLYDYERIRKVCNK 221 (286)
Q Consensus 152 ~~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~--~~n~g~~~~l~~I~~ia~~ 221 (286)
.+.+.|.. ++.+|.+.+ +++.+|+++|++.|.+. .|-+|+.+ .+++|.+.|+++|+++|++
T Consensus 197 --------aa~~lGlg~~~v~~Vp~d~~-~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~ 267 (490)
T PLN02880 197 --------ACQIAGIHPENCRLLKTDSS-TNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKS 267 (490)
T ss_pred --------HHHHcCCCHHHEEEeecCCC-cCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHH
Confidence 45566653 556663322 46799999999999642 24455554 5558899999999999999
Q ss_pred cCCEEEEeccccccccccCCCC---CCCCcceEEEeCCCCCCCCCCc-eEEEEec
Q 023191 222 QKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRG-AMIFFRK 272 (286)
Q Consensus 222 ~~~~vivD~a~~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~ 272 (286)
||+|++||+||+.+........ ..+.++|+++.++|||++.|.+ |++++++
T Consensus 268 ~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~ 322 (490)
T PLN02880 268 NGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKD 322 (490)
T ss_pred cCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeC
Confidence 9999999999887765432211 2234699999999999999999 9999986
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-17 Score=149.37 Aligned_cols=203 Identities=16% Similarity=0.131 Sum_probs=145.7
Q ss_pred CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL 132 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~ 132 (286)
....+++.+.+++...+..+. +.++ ......++|+.+..+++++++.+.+. .-.+|+|+| +++.++.+.
T Consensus 70 ~~~~~~~~a~~~~~~~~~~nl--~d~~-----~~p~a~~~E~~~v~~l~~l~~~~~~~---~G~~t~GgTean~lal~aa 139 (460)
T COG0076 70 CPTRVPPVAAELLVSALNKNL--GDPD-----ESPAAAELEERVVNMLSDLLGAPEEA---SGTFTSGGTEANLLALLAA 139 (460)
T ss_pred CCCCCHHHHHHHHHHHHhhcC--CCcc-----cChhHHHHHHHHHHHHHHHhCCCCCC---ceEEEcChHHHHHHHHHHH
Confidence 344567788888888776533 2221 22356799999999999999996432 467788888 887655544
Q ss_pred cC-----CC---C------eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 133 LK-----PH---D------RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 133 ~~-----~G---d------~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
-+ .+ . +|+++...|.++.. .+.+.|.+.+.++... .+.++|++++++++++ ++..
T Consensus 140 r~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~K--------aa~~lG~~~~~v~~~~--~~~~id~~~l~~~i~~-~t~~ 208 (460)
T COG0076 140 RERWRKRALAESGKPGGKPNIVCSETAHFSFEK--------AARYLGLGLRRVPTVP--TDYRIDVDALEEAIDE-NTIG 208 (460)
T ss_pred HHHHHHHhhhcccccCCCCeEEecCcchhHHHH--------HHHHhCCCceeEEecc--CccccCHHHHHHHHHh-hccC
Confidence 11 11 1 58887755555543 5667888788787442 2689999999999998 5543
Q ss_pred --EEEc--CCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCC----CCCCCcceEEEeCCCCCCCCCCc-eEEE
Q 023191 199 --IVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI----PSPFEYADVVTTTTHKSLRGPRG-AMIF 269 (286)
Q Consensus 199 --v~i~--~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~----~~~~~~~D~v~~s~~K~l~gp~g-G~l~ 269 (286)
|+.+ .+.+|.+.|+++|+++|+++++|+|||+|.+....+.... ...++++|.++.++|||+..|.| |+++
T Consensus 209 g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il 288 (460)
T COG0076 209 GVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVL 288 (460)
T ss_pred ceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEE
Confidence 4443 5558899999999999999999999999955444433222 23345799999999999999999 9999
Q ss_pred Eecc--hhhh
Q 023191 270 FRKG--VKEI 277 (286)
Q Consensus 270 ~~~~--~~~~ 277 (286)
+|++ +.+.
T Consensus 289 ~rd~e~l~~~ 298 (460)
T COG0076 289 FRDEEALRRI 298 (460)
T ss_pred EECHHHhhhh
Confidence 9986 4443
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-17 Score=149.98 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=126.7
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
.+..+...+.++++++++|++.+ ++.+++|++ ++.+++.++ ..+||+|+++++.|+++...... .+...|
T Consensus 108 ~g~~~~~~e~~~~la~l~g~~~~----~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~----~~~~~G 179 (447)
T PRK00451 108 QGTLQAIFEYQTMICELTGMDVA----NASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKT----YLKGQG 179 (447)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcc----eEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHH----HHHhCC
Confidence 33444444556788999999874 599999999 666677777 48999999999888776543221 011246
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCCCccCHHHHHHHHHhcCCEEEE--eccccccccccCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLYDYERIRKVCNKQKAIMLA--DMAHISGLVAAGVI 242 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n~g~~~~l~~I~~ia~~~~~~viv--D~a~~~g~~~~~~~ 242 (286)
.+++.++ .+ ++ .+|++++++++++ +|++|+++ ++++|.+.|+++|+++|+++|+++++ |.. +.|.+... .
T Consensus 180 ~~~~~v~--~~-~~-~~d~~~l~~~i~~-~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~-~ 252 (447)
T PRK00451 180 IEVVEVP--YE-DG-VTDLEALEAAVDD-DTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPP-G 252 (447)
T ss_pred cEEEEec--CC-CC-CCCHHHHHHhcCC-CeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCc-c
Confidence 5566565 44 34 8999999999987 89999997 63488899999999999999999998 544 34433211 1
Q ss_pred CCCCCcceEEEeCCCCC-----CCCCCceEEEEecchhhh
Q 023191 243 PSPFEYADVVTTTTHKS-----LRGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 243 ~~~~~~~D~v~~s~~K~-----l~gp~gG~l~~~~~~~~~ 277 (286)
.. ++|++++++||| ++||+.|++++++++.+.
T Consensus 253 ~~---~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~ 289 (447)
T PRK00451 253 EY---GADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQ 289 (447)
T ss_pred cC---CCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhh
Confidence 12 599999999996 788866999999887665
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=149.50 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeee
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 168 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 168 (286)
...+|| +.+++++|.+. .+++++|+.++.+++.++++|||+|+++.+.|.+.+... ...+...|.++
T Consensus 64 ~~~~le----~~lA~l~g~~~-----av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~----~~~~~~~G~~v 130 (389)
T PRK05968 64 TVRAFE----EMLAKLEGAED-----ARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLF----ETILKRMGVEV 130 (389)
T ss_pred hHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHH----HHHHHHcCceE
Confidence 345555 78888889865 488888888887788889999999999997776653321 11223345444
Q ss_pred EEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC
Q 023191 169 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 246 (286)
Q Consensus 169 ~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~ 246 (286)
+.+ +. .|++++++++ + +||+|+++ ++| .+...++++|+++|++||++||+|++|+.+.... ++
T Consensus 131 ~~v--d~------~d~~~l~~~i-~-~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~-----p~ 195 (389)
T PRK05968 131 DYV--DG------RDEEAVAKAL-P-GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR-----PI 195 (389)
T ss_pred EEe--CC------CCHHHHHHhc-c-cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC-----ch
Confidence 433 21 2889999988 4 79999997 777 5577899999999999999999999987664322 22
Q ss_pred C-cceEEEeCCCCCCCCCC---ceEEEEecchhhh
Q 023191 247 E-YADVVTTTTHKSLRGPR---GAMIFFRKGVKEI 277 (286)
Q Consensus 247 ~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~~ 277 (286)
. ++|+++.|++|+++||. ||+++.++++.+.
T Consensus 196 ~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~ 230 (389)
T PRK05968 196 TLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIAR 230 (389)
T ss_pred hcCCcEEEeeccccccCCCCeEEEEEEECHHHHHH
Confidence 2 58999999999999863 5888887765543
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=147.46 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=112.0
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+++.++++.|.+. .+++.+|+.++. ++.++++|||+|+++++.|++.+.... ..+...|.+++.+ +
T Consensus 55 Le~~lA~l~g~~~-----~~~~~sG~aai~-~~~~~l~~Gd~Viv~~~~y~~~~~~~~----~~~~~~G~~v~~v--~-- 120 (377)
T PRK07671 55 LEELIAVLEGGHA-----GFAFGSGMAAIT-AVMMLFSSGDHVILTDDVYGGTYRVMT----KVLNRFGIEHTFV--D-- 120 (377)
T ss_pred HHHHHHHHhCCCc-----eEEeCCHHHHHH-HHHHHhCCCCEEEECCCccchHHHHHH----HHHhcCCeEEEEE--C--
Confidence 4488888888765 488999987665 344688999999999977654432111 1112345444333 2
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEE
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (286)
..|++++++++++ +||+|+++ |+| +|...++++|.++|+++|+++++|++++.+... .++. ++|+++
T Consensus 121 ----~~d~~~l~~ai~~-~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~-----~p~~~g~Divv 190 (377)
T PRK07671 121 ----TSNLEEVEEAIRP-NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQ-----SPISLGADIVL 190 (377)
T ss_pred ----CCCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccC-----ChhhhCCeEEE
Confidence 1389999999987 89999997 666 678899999999999999999999997654332 1223 589999
Q ss_pred eCCCCCCCCCC---ceEEEEec
Q 023191 254 TTTHKSLRGPR---GAMIFFRK 272 (286)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~ 272 (286)
+|++|+++||. +|++++++
T Consensus 191 ~S~sK~l~G~~~~~~G~~v~~~ 212 (377)
T PRK07671 191 HSATKYLGGHSDVVAGLVVVNS 212 (377)
T ss_pred ecCcccccCCccceeEEEEeCc
Confidence 99999999985 47777765
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-17 Score=145.51 Aligned_cols=201 Identities=15% Similarity=0.071 Sum_probs=136.9
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +|+.+.+++.+.+......+| +. .+..+++ +.+++++|++++ +|++|+|++
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y------~~-~g~~~lr----~~ia~~~~~~~~----~I~~t~G~~~ 83 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKRVPFNRY------PH-ITSDPLR----EAIAEFYGLDAE----NIAVGNGSDE 83 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhcCccccC------CC-CCHHHHH----HHHHHHhCcCcc----eEEEcCCHHH
Confidence 45889888874 578899998877643111123 21 3455566 566666778775 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.++ +||+|+++.| .|..+...+...|..++.++ .+ +++.+|++.+++.. + ++++++++
T Consensus 84 ~l~~~~~~~--~gd~V~v~~P--------~y~~~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~-~-~~~~v~~~~ 148 (337)
T PRK03967 84 LISYLVKLF--EGKHIVITPP--------TFGMYSFYAKLNGIPVIDVP--LK-EDFTIDGERIAEKA-K-NASAVFICS 148 (337)
T ss_pred HHHHHHHHh--CCCeEEEeCC--------ChHHHHHHHHHcCCeEEEee--cC-CCCCcCHHHHHHhc-c-CCCEEEEeC
Confidence 666565555 7999999994 44433334456676665554 44 45789999998865 4 78888887
Q ss_pred CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCCC--CCCceEEEEecchhhh
Q 023191 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLR--GPRGAMIFFRKGVKEI 277 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~ 277 (286)
|+| +|...+.++|.++++ +++++|+|+++.. ...... ..... ..-+++.|++|.|+ |.|.|++++++++.+.
T Consensus 149 P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~-~~~~~~-~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~ 225 (337)
T PRK03967 149 PNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAE-FSGKSL-IGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDA 225 (337)
T ss_pred CCCCCCCCCCHHHHHHHHh-cCCEEEEECchhh-hcccch-HHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHH
Confidence 777 788899999999995 7999999999752 211110 00001 12377899999874 4566999998887765
Q ss_pred hcc
Q 023191 278 NKQ 280 (286)
Q Consensus 278 ~~~ 280 (286)
.++
T Consensus 226 ~~~ 228 (337)
T PRK03967 226 LYR 228 (337)
T ss_pred HHh
Confidence 553
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=152.42 Aligned_cols=184 Identities=16% Similarity=0.141 Sum_probs=135.8
Q ss_pred ccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccc
Q 023191 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKI 161 (286)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~ 161 (286)
+|+...+..+|++++.+++....|+..+. .+|++|+|++ ++.++++.+++|||.|++-+|.|.+.. ...
T Consensus 127 ~y~~~~G~~~LR~~ia~~l~~~~g~~~~~--~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~--------~~~ 196 (459)
T COG1167 127 QYGPTAGLPELREAIAAYLLARRGISCEP--EQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL--------QAL 196 (459)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCccCc--CeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHH--------HHH
Confidence 35566788999999999998777875543 4699999999 888899999999999999995554443 345
Q ss_pred ccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc--CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccc
Q 023191 162 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG--ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISG 235 (286)
Q Consensus 162 ~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~--~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g 235 (286)
+..|.++..+ ++| +..+|+|.|++.+..+++|++++. .+| +|...+ -++|.++|++||++||.|..++.-
T Consensus 197 ~~~g~~~~~v--p~d--~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el 272 (459)
T COG1167 197 EALGARVIPV--PVD--EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGEL 272 (459)
T ss_pred HHcCCcEEec--CCC--CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhh
Confidence 5667555444 454 456899999999988789999997 344 565555 459999999999999999995432
Q ss_pred ccccCCCCCCCC-----cceEEEeCCCCCC-CCCCceEEEEecchhhhhccC
Q 023191 236 LVAAGVIPSPFE-----YADVVTTTTHKSL-RGPRGAMIFFRKGVKEINKQG 281 (286)
Q Consensus 236 ~~~~~~~~~~~~-----~~D~v~~s~~K~l-~gp~gG~l~~~~~~~~~~~~~ 281 (286)
... +....++. +.-+.++|++|++ .|-+.|+++...++.+.+.+.
T Consensus 273 ~~~-~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~ 323 (459)
T COG1167 273 RYD-GPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRL 323 (459)
T ss_pred hcC-CCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHH
Confidence 221 11121121 2447899999987 555669999998877666543
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=147.62 Aligned_cols=156 Identities=20% Similarity=0.188 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
...+++ +.++++.|.+ ++++++|++ ++.+++.+++++||+|+++++.|++.......+ ....+..
T Consensus 52 ~~~~le----~~lA~l~g~~------~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~----~~~~~~~ 117 (382)
T TIGR02080 52 TRDLLQ----QALAELEGGA------GAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNAL----AKKGCFR 117 (382)
T ss_pred hHHHHH----HHHHHHhCCC------cEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHH----HhhcCeE
Confidence 344555 7778888743 378888888 888799999999999999997776543321111 1111222
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
+..+ + ..|++++++++++ +||+|+++ |+| +|...++++|.++|+++|+++++|++|..+... .+
T Consensus 118 v~~~----d----~~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~-----~p 183 (382)
T TIGR02080 118 VLFV----D----QGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQ-----NP 183 (382)
T ss_pred EEEE----C----CCCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccC-----Cc
Confidence 2211 2 2389999999987 89999997 666 678899999999999999999999998766432 12
Q ss_pred CC-cceEEEeCCCCCCCCCC---ceEEEEec
Q 023191 246 FE-YADVVTTTTHKSLRGPR---GAMIFFRK 272 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~---gG~l~~~~ 272 (286)
+. ++|+++.|++|+++|+. +|++.+++
T Consensus 184 l~~gaDivv~S~sK~l~G~~~~~~G~i~~~~ 214 (382)
T TIGR02080 184 LALGADLVLHSCTKYLNGHSDVIAGAVIAKD 214 (382)
T ss_pred hhhCCCEEEeecceeccCCCCceeEEEEeCC
Confidence 22 58999999999998865 48877754
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=148.62 Aligned_cols=161 Identities=16% Similarity=0.065 Sum_probs=116.8
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
+...+|| +.+++++|.+. +++++|++ ++.+++.++++|||+|+++++.|+++..... ......|.
T Consensus 65 pt~~~Le----~~lA~l~g~~~------~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~----~~~~~~Gi 130 (394)
T PRK07050 65 PTSLALA----QRLAEIEGGRH------ALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGE----WLARDFGI 130 (394)
T ss_pred HHHHHHH----HHHHHHhCCCe------EEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHH----HHHHhcCe
Confidence 4445555 77888888653 77777777 8888999999999999999977776542111 11233454
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
.++.+ +.. +.+++++++++ +||+|+++ |+| ++...++++|+++|+++|+++++|++|+.|... .
T Consensus 131 ~v~~v--d~~------~~~~l~~~i~~-~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~-----~ 196 (394)
T PRK07050 131 TVRFY--DPL------IGAGIADLIQP-NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAF-----K 196 (394)
T ss_pred EEEEE--CCC------CHHHHHHhcCC-CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccccccc-----C
Confidence 44333 211 45788888887 89999997 666 558889999999999999999999998887542 1
Q ss_pred CCC-cceEEEeCCCCCCCCCC---ceEEEEec-chhh
Q 023191 245 PFE-YADVVTTTTHKSLRGPR---GAMIFFRK-GVKE 276 (286)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~-~~~~ 276 (286)
++. |+|+++.|++|+++|.. ||++++++ ++.+
T Consensus 197 ~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~ 233 (394)
T PRK07050 197 PFEHGVDISVQALTKYQSGGSDVLMGATITADAELHA 233 (394)
T ss_pred HHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHH
Confidence 222 58999999999997653 67777754 4433
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=150.48 Aligned_cols=156 Identities=18% Similarity=0.211 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 94 ESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 94 ~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
.+++.++++++.|.+. .+.+++|+.++. ++..++++||+|+++++.|+++..... ..+...|..++.+
T Consensus 135 ~~aLE~~lA~leg~e~-----ai~~~SG~aAi~-~il~ll~~GD~VI~~~~~y~~t~~ll~----~~l~~~G~~v~~v-- 202 (464)
T PLN02509 135 RDALESLLAKLDKADR-----AFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLS----QVVPRSGVVVKRV-- 202 (464)
T ss_pred HHHHHHHHHHHhCCCE-----EEEeCcHHHHHH-HHHHHhCCCCEEEEcCCchhhHHHHHH----HHHHHCCeEEEEe--
Confidence 4455588888887653 466677766655 445679999999999977765432111 0112345444333
Q ss_pred ccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cce
Q 023191 174 RLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YAD 250 (286)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D 250 (286)
+ ..|++++++++++ +||+|+++ ++| +|...++++|+++|++||+++|+|++|+.+.... ++. ++|
T Consensus 203 d------~~d~e~l~~ai~~-~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~-----pl~~gaD 270 (464)
T PLN02509 203 N------TTNLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSR-----PLELGAD 270 (464)
T ss_pred C------CCCHHHHHHhCCc-CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCC-----hhhcCCc
Confidence 2 2378999999987 89999997 777 7788999999999999999999999988775421 222 599
Q ss_pred EEEeCCCCCCCCCC---ceEEEEecc
Q 023191 251 VVTTTTHKSLRGPR---GAMIFFRKG 273 (286)
Q Consensus 251 ~v~~s~~K~l~gp~---gG~l~~~~~ 273 (286)
++++|++|+++|+. ||+++++++
T Consensus 271 ivv~S~tK~l~G~gdv~gG~v~~~~~ 296 (464)
T PLN02509 271 IVMHSATKFIAGHSDVMAGVLAVKGE 296 (464)
T ss_pred EEEecCcccccCCCccceeEEEeccH
Confidence 99999999999865 588887765
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=150.94 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=117.9
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCC-CeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
+++.+++++|++++ +|++|+|++ ++..++.++++|| |+|++++ |.|+.|...+...|.+++.+|
T Consensus 65 Lr~aia~~~~~~~~----~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~--------P~y~~y~~~~~~~g~~v~~v~-- 130 (354)
T PRK04635 65 LINAYSAYAGVAPE----QILTSRGADEAIELLIRAFCEPGQDSIACFG--------PTYGMYAISAETFNVGVKALP-- 130 (354)
T ss_pred HHHHHHHHhCcCHH----HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcC--------CChHHHHHHHHHcCCEEEEEe--
Confidence 33666777899885 599999999 8887889999999 9999999 555555545566777676665
Q ss_pred cCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhc-CCEEEEeccccccccccCCCCCCCC--cc
Q 023191 175 LNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ-KAIMLADMAHISGLVAAGVIPSPFE--YA 249 (286)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~-~~~vivD~a~~~g~~~~~~~~~~~~--~~ 249 (286)
++ +++.+|++.+++ + + ++|+|+++ |+| +|...+.+++.++++.. +++||+|+++.- ............ ..
T Consensus 131 ~~-~~~~~~~~~l~~-~-~-~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~-~~~~~s~~~~~~~~~~ 205 (354)
T PRK04635 131 LT-ADYQLPLDYIEQ-L-D-GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIE-FCPEYSVADLLASYPN 205 (354)
T ss_pred cC-CCCCCCHHHHHh-c-c-CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHh-hccCcchHHHHhhCCC
Confidence 44 457899998874 3 4 89999998 777 78889999999988764 699999999642 211100000000 01
Q ss_pred eEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 250 DVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 250 D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
-+++.|++|+++ |.|-|++++++++.+..+
T Consensus 206 ~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~ 237 (354)
T PRK04635 206 LVVLRTLSKAFALAGARCGFTLANEELIEILM 237 (354)
T ss_pred EEEEechHHHhhhhHHHHhhhhCCHHHHHHHH
Confidence 267899999874 445599999988776554
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-17 Score=157.34 Aligned_cols=175 Identities=14% Similarity=0.087 Sum_probs=132.7
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-c-------CCCCeEEeccCCCCcccCccccccc
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-L-------KPHDRIMALDLPHGGHLSHGYQTDT 158 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~-------~~Gd~Vl~~~~~~~~~~~~~~~~~~ 158 (286)
+++..++..++..|+++++|.+. +.+...+|+.+.++.++++ . ...+.|+++...|+.+.. +
T Consensus 525 sqG~lq~i~elq~~l~eltGmd~----~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPa--s---- 594 (939)
T TIGR00461 525 VEGYQELIAQLEKWLCSITGFDA----ISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPA--S---- 594 (939)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCC----cccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHH--H----
Confidence 46677888889999999999986 3577777777665444444 1 235689999999988733 2
Q ss_pred cccccceeeeEEEecccCCCCCCCCHHHHHHHhhh--cCCcEEEEc-CCCCCCccC-HHHHHHHHHhcCCEEEEeccccc
Q 023191 159 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASAYARLYD-YERIRKVCNKQKAIMLADMAHIS 234 (286)
Q Consensus 159 ~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v~i~-~~n~g~~~~-l~~I~~ia~~~~~~vivD~a~~~ 234 (286)
+...|.+++.++ .+ +++.+|+++|++++++ .+|++|+++ ++|+|...+ +++|+++||++|.++++|+||..
T Consensus 595 --a~~~G~~Vv~V~--~d-~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~ 669 (939)
T TIGR00461 595 --AAMAGMQVVPVN--CD-QDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMN 669 (939)
T ss_pred --HHHCCCEEEEec--cC-CCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChh
Confidence 345676666665 44 5789999999999974 378899887 777887766 99999999999999999999976
Q ss_pred cccccCCCCCCCCcceEEEeCCCCCCC-----CCCc-eEEEEecchhhhh
Q 023191 235 GLVAAGVIPSPFEYADVVTTTTHKSLR-----GPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 235 g~~~~~~~~~~~~~~D~v~~s~~K~l~-----gp~g-G~l~~~~~~~~~~ 278 (286)
+....... .--++|++++|.||+|+ |++| |++++++.+...+
T Consensus 670 al~~l~~P--g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~l 717 (939)
T TIGR00461 670 AQVGLTSP--GDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFL 717 (939)
T ss_pred hCCCCCCc--cccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhc
Confidence 55433211 11259999999999987 6666 9999998765443
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-17 Score=148.33 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=115.5
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+....|| +.+++++|.+. .++++||+.|+.+++.+++++||+|+++...|.+...... ..+...|.+
T Consensus 69 p~~~~Le----~~lA~l~g~~~-----av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~----~~l~~~Gi~ 135 (436)
T PRK07812 69 PTQDVVE----QRIAALEGGVA-----ALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFH----YTLPKLGIE 135 (436)
T ss_pred chHHHHH----HHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHH----HHhhcCeEE
Confidence 3344555 88888888865 4888888888887889999999999999877765432111 011123433
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
+..+ + + ..|++++++++++ +|++|++. ++| +|.+.|+++|+++|+++|+++|+|++|+.+... .+
T Consensus 136 v~~v--d-d----~~d~e~l~~ai~~-~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~-----~p 202 (436)
T PRK07812 136 VSFV--E-D----PDDLDAWRAAVRP-NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLI-----RP 202 (436)
T ss_pred EEEE--C-C----CCCHHHHHHhCCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC-----Cc
Confidence 3322 2 2 1389999999987 89999986 666 789999999999999999999999998876543 22
Q ss_pred CC-cceEEEeCCCCCCCCCCc--eEEEE
Q 023191 246 FE-YADVVTTTTHKSLRGPRG--AMIFF 270 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~g--G~l~~ 270 (286)
+. ++|+++.|+||+++|+.+ |.+++
T Consensus 203 l~~GaDivv~S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 203 LEHGADIVVHSATKYLGGHGTAIAGVIV 230 (436)
T ss_pred hhcCCCEEEEecccccCCCCCeEEEEEE
Confidence 33 599999999999988754 44444
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-17 Score=146.98 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=115.8
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+....|| +.++++.|... .+.+.||+.|+.+++.+++++||+|+++.+.|.+...... ..+...|.+
T Consensus 61 Ptv~~lE----~~la~leg~~~-----av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~----~~l~~~Gi~ 127 (432)
T PRK06702 61 PTLAAFE----QKLAELEGGVG-----AVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFG----VSLRKLGID 127 (432)
T ss_pred cHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHH----HHHHHCCCE
Confidence 4566666 77888888765 3777778888888889999999999999977765543211 112234544
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
+..+ + ..+|+++++++|++ +||+|++. ++| ++.+.++++|+++|+++|+++++|++.+.+. ...+
T Consensus 128 v~~v--d-----~~~d~~~l~~~I~~-~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~-----~~~p 194 (432)
T PRK06702 128 VTFF--N-----PNLTADEIVALAND-KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPY-----LCQA 194 (432)
T ss_pred EEEE--C-----CCCCHHHHHHhCCc-CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchh-----hCCh
Confidence 4333 2 34789999999998 99999987 666 5578899999999999999999999964322 2233
Q ss_pred CC-cceEEEeCCCCCCCCCCc---eEEE
Q 023191 246 FE-YADVVTTTTHKSLRGPRG---AMIF 269 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~g---G~l~ 269 (286)
++ |+|+++.|.+|+++|..+ |+++
T Consensus 195 l~~GADIvv~S~TKy~~Ghsd~l~G~v~ 222 (432)
T PRK06702 195 FEHGANIIVHSTTKYIDGHASSLGGIVI 222 (432)
T ss_pred hhcCCCEEEEccccccCCCcceeceEEE
Confidence 44 699999999999988765 4444
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.8e-17 Score=147.76 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=112.6
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+++.+++++|.+. .+++++|+.++..++.+++++||+|+++++.|++.+... ...+...|.+++.++ .
T Consensus 62 le~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~----~~~~~~~G~~v~~v~--~- 129 (418)
T TIGR01326 62 LEQRIAALEGGVA-----ALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLF----KHTLKRLGIEVRFVD--P- 129 (418)
T ss_pred HHHHHHHHhCCCe-----EEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHH----HHHHHHcCcEEEEEC--C-
Confidence 4488888888753 477777777888788899999999999997776543221 112234554444442 2
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEE
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (286)
.|++++++++++ ++++|+++ ++| +|.+.|+++|.++|+++|+++|+|++++.+... .++. ++|+++
T Consensus 130 -----~d~~~l~~~l~~-~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~-----~~l~~g~Divv 198 (418)
T TIGR01326 130 -----DDPEEFEKAIDE-NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLC-----RPIDHGADIVV 198 (418)
T ss_pred -----CCHHHHHHhcCc-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcC-----CchhcCCeEEE
Confidence 189999999987 89999997 666 668889999999999999999999998765321 2222 599999
Q ss_pred eCCCCCCCCCCc--eEEEEec
Q 023191 254 TTTHKSLRGPRG--AMIFFRK 272 (286)
Q Consensus 254 ~s~~K~l~gp~g--G~l~~~~ 272 (286)
.|++|+++|+.. |+++++.
T Consensus 199 ~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 199 HSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred ECccccccCCccceEEEEEec
Confidence 999999987543 6666643
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=143.86 Aligned_cols=201 Identities=17% Similarity=0.164 Sum_probs=133.4
Q ss_pred CceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 48 GLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
.++|..++++ +|+.+++++.+.+.... +|+. .+..+++ +.++++++++++ +|++|+|++ +
T Consensus 21 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~~--~Y~~-------~~~~~lr----~~ia~~~~~~~~----~i~it~Ga~~~ 83 (354)
T PRK06358 21 ILDFSANINPLGVPESLKQAITENLDKLV--EYPD-------PDYLELR----KRIASFEQLDLE----NVILGNGATEL 83 (354)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHhhh--cCCC-------ccHHHHH----HHHHHHhCCChh----hEEECCCHHHH
Confidence 5889888875 58889998887653311 2322 1234555 666666788875 599999999 7
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-C
Q 023191 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (286)
Q Consensus 125 ~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~ 203 (286)
+..++.++ .+ +.|++++ |.|..+...+...|.+++.++++.+ +++.+| +++.+.+.+ ++++++++ |
T Consensus 84 l~~~~~~~-~~-~~v~i~~--------P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~d-~~~~~~~~~-~~~~v~~~~P 150 (354)
T PRK06358 84 IFNIVKVT-KP-KKVLILA--------PTFAEYERALKAFDAEIEYAELTEE-TNFAAN-EIVLEEIKE-EIDLVFLCNP 150 (354)
T ss_pred HHHHHHHh-CC-CcEEEec--------CChHHHHHHHHHcCCeeEEEeCccc-cCCCcc-HHHHHhhcc-CCCEEEEeCC
Confidence 77677765 44 6899999 5555544455566766666654311 356889 677666766 79999887 7
Q ss_pred CC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC---Cc--ceEEEeCCCCCCC--CCCceEEEEe-
Q 023191 204 SA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---EY--ADVVTTTTHKSLR--GPRGAMIFFR- 271 (286)
Q Consensus 204 ~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~---~~--~D~v~~s~~K~l~--gp~gG~l~~~- 271 (286)
+| +|...+ +++|+++|++|++++|+|+++. .....+.....+ .. .-+++.|++|+|+ |.|.|++++.
T Consensus 151 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~ 229 (354)
T PRK06358 151 NNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFM-DFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSN 229 (354)
T ss_pred CCCCCCccCHHHHHHHHHHHHhcCCEEEEeCccc-ccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCC
Confidence 66 776554 7788889999999999999954 332222111111 11 2377999999874 5566999885
Q ss_pred cchhhhhc
Q 023191 272 KGVKEINK 279 (286)
Q Consensus 272 ~~~~~~~~ 279 (286)
+.+.+..+
T Consensus 230 ~~~~~~~~ 237 (354)
T PRK06358 230 KNLAEKLL 237 (354)
T ss_pred HHHHHHHH
Confidence 45654444
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-17 Score=147.88 Aligned_cols=176 Identities=18% Similarity=0.132 Sum_probs=115.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHCCCC-CCCcc--eeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccc
Q 023191 84 YGGNEYIDMAESLCQKRALEAFRLD-PEKWG--VNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 160 (286)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~g~~-~~~~~--~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~ 160 (286)
|+...+..+|++++.+++.+..+.. .+++- .++..++|+..+...+.+++.|||+|++++ |.|+.|...
T Consensus 87 Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~--------P~y~~y~~~ 158 (423)
T PLN02397 87 YLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPN--------PTWGNHHNI 158 (423)
T ss_pred CCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeC--------CCchhHHHH
Confidence 6777889999999999886554322 11100 113334444434445566678999999999 666655556
Q ss_pred cccceeeeEEEecccCCCCCCCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEecccc
Q 023191 161 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHI 233 (286)
Q Consensus 161 ~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~ 233 (286)
+...|.+++.+++. +.+++.+|++.+++.+.. .++++++++ |+| +|... .+++|+++|++||++||+|+++.
T Consensus 159 ~~~~g~~~~~v~l~-~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~ 237 (423)
T PLN02397 159 FRDAGVPVRTYRYY-DPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQ 237 (423)
T ss_pred HHHcCCeEEEeecc-cCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccC
Confidence 67788777666642 223578999999888763 256777777 677 77554 46788899999999999999953
Q ss_pred ccccccCC---CCC--CCC--c-ceEEEeCCCCCCC--CCCceEEE
Q 023191 234 SGLVAAGV---IPS--PFE--Y-ADVVTTTTHKSLR--GPRGAMIF 269 (286)
Q Consensus 234 ~g~~~~~~---~~~--~~~--~-~D~v~~s~~K~l~--gp~gG~l~ 269 (286)
+....+. ... .+. + .-+++.|++|+|+ |+|-|+++
T Consensus 238 -~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v 282 (423)
T PLN02397 238 -GFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALS 282 (423)
T ss_pred -CccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEE
Confidence 3332221 000 010 1 2266899999875 77889985
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=147.94 Aligned_cols=180 Identities=14% Similarity=0.053 Sum_probs=122.2
Q ss_pred CCcchHHHHHHHHHHHHHHHCCCCCCCcc---eeEEeCCChH-HHHHHHHHh----cC-------CCCeEEeccCCCCcc
Q 023191 85 GGNEYIDMAESLCQKRALEAFRLDPEKWG---VNVQSLSGSP-SNFQVYTAL----LK-------PHDRIMALDLPHGGH 149 (286)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~v~~~sG~~-a~~~~l~a~----~~-------~Gd~Vl~~~~~~~~~ 149 (286)
..++...++|+.+.+|+++++|.+...|. ..-++++|++ +++.++.+- .+ |.=.|++.+..|.++
T Consensus 163 ~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv 242 (539)
T PLN02590 163 LTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSF 242 (539)
T ss_pred ccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHH
Confidence 34466789999999999999999753110 1245566666 776554432 11 111233344344443
Q ss_pred cCcccccccccccccee---eeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc--CCCCCCccCHHHHHHHH
Q 023191 150 LSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG--ASAYARLYDYERIRKVC 219 (286)
Q Consensus 150 ~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~--~~n~g~~~~l~~I~~ia 219 (286)
. +.+.+.|. .++.+|.+.+ +++.+|+++|+++|.+. .|-+|+.+ .+++|.+.|+++|+++|
T Consensus 243 ~--------KAa~ilGlg~~~vr~Vp~d~~-~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~ 313 (539)
T PLN02590 243 R--------KACLIGGIHEENIRLLKTDSS-TNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIA 313 (539)
T ss_pred H--------HHHHHcCCCcccEEEEeCCCC-CCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHH
Confidence 2 24556665 3566664321 35799999999999652 24455554 55688999999999999
Q ss_pred HhcCCEEEEeccccccccccCCCC---CCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 220 NKQKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 220 ~~~~~~vivD~a~~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
++|++|++||+|++.......... .+++.+|.++.++|||+..|.+ |++++|+.
T Consensus 314 ~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~ 371 (539)
T PLN02590 314 KKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDR 371 (539)
T ss_pred HHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCH
Confidence 999999999999765544332221 2345699999999999999999 99999974
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-17 Score=145.50 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=109.5
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
+...+|| +.++++.|.+. +++++|++ |+.+++ .++++||+|+++.+.|++... .+.... -.+
T Consensus 54 p~~~~le----~~lA~leg~~~------~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~-~~~~~~----~~~- 116 (364)
T PRK07269 54 PTRAKLE----ETLAAIESADY------ALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFR-WFNQQE----KEG- 116 (364)
T ss_pred ccHHHHH----HHHHHHhCCCe------EEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHH-HHHHHH----hcC-
Confidence 4566666 77777777654 55555555 777566 568999999999866654421 110000 000
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
. +. + ++..|++++++++++ +||+|+++ |+| ++...++++|+++|+++|+++++|++++.+... .
T Consensus 117 ~---~~--~---~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~-----~ 182 (364)
T PRK07269 117 R---FH--F---TYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQ-----R 182 (364)
T ss_pred c---EE--E---EecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-----C
Confidence 0 10 1 244689999999987 99999997 666 678889999999999999999999997655321 2
Q ss_pred CCC-cceEEEeCCCCCCCCCC---ceEEEEecc
Q 023191 245 PFE-YADVVTTTTHKSLRGPR---GAMIFFRKG 273 (286)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~ 273 (286)
++. ++|++++|++|+++|+. ||+++++++
T Consensus 183 pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~ 215 (364)
T PRK07269 183 PIELGADIVLHSATKYLSGHNDVLAGVVVTNDL 215 (364)
T ss_pred chhhCCcEEEecCceeccCCCcccceEEEeCcH
Confidence 333 69999999999998865 588888653
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-17 Score=146.67 Aligned_cols=161 Identities=13% Similarity=0.078 Sum_probs=115.3
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
++..+.|+ +.++.+.+.+. .++++||+.|+.+++.++++|||+|+++++.|+++.... .......|.
T Consensus 63 nPt~~~Le----~~la~le~~~~-----~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~----~~~l~~~Gi 129 (395)
T PRK05967 63 TPTTDALC----KAIDALEGSAG-----TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFC----DTMLKRLGV 129 (395)
T ss_pred ChHHHHHH----HHHHHHhCCCC-----EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHH----HHHHHhcCe
Confidence 34444455 77777666443 488888887888799999999999999997766553211 112234454
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
++..+ +.+ +.+.+++++++ +||+|+++ |+| ++...|+++|+++|+++|+++++|++++.+.. ..
T Consensus 130 ~v~~v--d~~------~~e~l~~al~~-~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~-----~~ 195 (395)
T PRK05967 130 EVEYY--DPE------IGAGIAKLMRP-NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY-----FR 195 (395)
T ss_pred EEEEe--CCC------CHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee-----cC
Confidence 44433 211 45789999988 89999998 676 56888999999999999999999999765432 23
Q ss_pred CCC-cceEEEeCCCCCCCCCCc---eEEEEecch
Q 023191 245 PFE-YADVVTTTTHKSLRGPRG---AMIFFRKGV 274 (286)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~~ 274 (286)
+++ |+|+++.|.+|+++|... |++..++++
T Consensus 196 pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~ 229 (395)
T PRK05967 196 PLDFGVDISIHAATKYPSGHSDILLGTVSANEKC 229 (395)
T ss_pred hhHcCCCEEEEecccccCCCCCeeEEEEEcCHHH
Confidence 334 599999999999887543 766666543
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=145.81 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeee
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 168 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 168 (286)
...+|+ +.++++.|.+. .+++.+|+.++.+++.+++++||+|+++.+.|++...... ......|..+
T Consensus 59 t~~~Le----~~lA~l~g~~~-----~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~----~~l~~~gi~v 125 (425)
T PRK06084 59 TNDVLE----QRVAALEGGVG-----ALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLA----HTLPRIGIET 125 (425)
T ss_pred hHHHHH----HHHHHHhCCCc-----eeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHH----HhcccceeEE
Confidence 344555 77888888653 4777788878887889999999999999977765432111 1112234333
Q ss_pred EEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC
Q 023191 169 ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF 246 (286)
Q Consensus 169 ~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~ 246 (286)
..+ + ..|++++++++++ +|++|+++ ++| +|...++++|.++|+++|++||+|++|+.+... .++
T Consensus 126 ~~~--d------~~d~e~le~ai~~-~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~-----~p~ 191 (425)
T PRK06084 126 RFA--A------HDDIAALEALIDE-RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLC-----RPF 191 (425)
T ss_pred EEE--C------CCCHHHHHHHhcc-CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC-----Chh
Confidence 222 2 2389999999987 89999997 767 778889999999999999999999999866432 223
Q ss_pred C-cceEEEeCCCCCCCCCC---ceEEEEec
Q 023191 247 E-YADVVTTTTHKSLRGPR---GAMIFFRK 272 (286)
Q Consensus 247 ~-~~D~v~~s~~K~l~gp~---gG~l~~~~ 272 (286)
. ++|+++.|++|+++|+. ||+++.+.
T Consensus 192 ~~gaDivv~S~tK~l~G~g~~~gG~v~~~~ 221 (425)
T PRK06084 192 EHGADIVVHSLTKYIGGHGTSIGGIVVDSG 221 (425)
T ss_pred hcCCCEEEECchhcccccccceeEEEEeCC
Confidence 3 59999999999998875 36555543
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=144.64 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=116.1
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
....+|| +.++++.|.+. .+++.+|+.++.++ .+++++||+|+++++.|++.... +.......|.+
T Consensus 52 pt~~~le----~~la~l~g~~~-----~~~~~sG~~ai~~~-~~ll~~Gd~Vl~~~~~y~~t~~~----~~~~~~~~G~~ 117 (366)
T PRK08247 52 PTRGVLE----QAIADLEGGDQ-----GFACSSGMAAIQLV-MSLFRSGDELIVSSDLYGGTYRL----FEEHWKKWNVR 117 (366)
T ss_pred chHHHHH----HHHHHHhCCCc-----EEEEcCHHHHHHHH-HHHhCCCCEEEEecCCcCcHHHH----HHHHhhccCce
Confidence 3445555 88888999875 47777777677644 46889999999999777654321 11122335544
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
++.+ +. .|++++++++++ +||+|+++ |+| ++...++++|+++|++||+++|+|++++.+... .+
T Consensus 118 v~~v--d~------~d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~-----~p 183 (366)
T PRK08247 118 FVYV--NT------ASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ-----RP 183 (366)
T ss_pred EEEE--CC------CCHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc-----Cc
Confidence 4333 22 389999999988 89999997 665 557789999999999999999999997654332 12
Q ss_pred CC-cceEEEeCCCCCCCCC---CceEEEEec-chhh
Q 023191 246 FE-YADVVTTTTHKSLRGP---RGAMIFFRK-GVKE 276 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp---~gG~l~~~~-~~~~ 276 (286)
+. ++|+++.|++|+++|+ .+|++.+++ ++.+
T Consensus 184 ~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~ 219 (366)
T PRK08247 184 LEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCE 219 (366)
T ss_pred hhcCCcEEEeecceeccCCCceeeeEEecChHHHHH
Confidence 22 5999999999999887 458888863 4444
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=142.80 Aligned_cols=202 Identities=13% Similarity=0.127 Sum_probs=135.5
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|+.++++ +|+.+++++.+.+... .+|+. .. ..+|+ +.++++++++++ +|++|+|++
T Consensus 23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~~--~~Y~~------~~-~~~Lr----~aia~~~~v~~~----~I~it~G~~~ 85 (360)
T PRK07392 23 AILDFSASINPLGPPESVIAAIQSALSAL--RHYPD------PD-YRELR----LALAQHHQLPPE----WILPGNGAAE 85 (360)
T ss_pred cEEEeCCcCCCCCCCHHHHHHHHHHHHHh--hcCCC------cC-HHHHH----HHHHHHhCcChh----hEEECCCHHH
Confidence 46889988884 6888999887765431 12322 12 34555 555556688775 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCC---CCCHHHHHHHhhhcCCcEEE
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG---YIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~---~~d~e~l~~~i~~~~tk~v~ 200 (286)
++..+++++ .+||.|++++ |.|..+...+...|.+++.++++.+ ..+ ..|++++++.. + ++++++
T Consensus 86 ~i~~~~~~l-~~g~~vlv~~--------P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~~~ 153 (360)
T PRK07392 86 LLTWAGREL-AQLRAVYLIT--------PAFGDYRRALRAFGATVKELPLPLD-QPSPGLTLRLQTLPPQL-T-PNDGLL 153 (360)
T ss_pred HHHHHHHHh-CCCCeEEEEC--------CCcHHHHHHHHHcCCeEEEEecccc-cCCcccccCHHHHHHhc-c-CCCEEE
Confidence 777677775 4789999999 6666555566677877766664322 122 35677776553 3 688888
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC---Cc--ceEEEeCCCCCC--CCCCceEEEEe
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---EY--ADVVTTTTHKSL--RGPRGAMIFFR 271 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~---~~--~D~v~~s~~K~l--~gp~gG~l~~~ 271 (286)
++ |+| +|...+.++|.++|+++++ +|+|+++. .....+.....+ .. .-+++.|++|+| .|.+-|+++++
T Consensus 154 l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~-~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~ 231 (360)
T PRK07392 154 LNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFM-DFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAH 231 (360)
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchh-hhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCC
Confidence 87 777 7888899999999999985 66699954 322211111111 11 237789999987 45666999998
Q ss_pred cchhhhhc
Q 023191 272 KGVKEINK 279 (286)
Q Consensus 272 ~~~~~~~~ 279 (286)
.++.+..+
T Consensus 232 ~~~~~~~~ 239 (360)
T PRK07392 232 PDRLQRWQ 239 (360)
T ss_pred HHHHHHHH
Confidence 87665544
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=145.92 Aligned_cols=195 Identities=21% Similarity=0.235 Sum_probs=129.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcc-cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhc--C
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--K 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~--~ 134 (286)
.+|.+++++.+.+.. +..+..+.+. ++......+|+ +.+++++|.+. .|++++|++++..++.++. .
T Consensus 61 ~~p~v~~a~~~~~~~-~~~~~~~s~~~~~~~~~~~~Le----~~la~~~g~~~-----~i~~~sG~~a~~~~i~~l~~~~ 130 (410)
T PRK13392 61 QHPDVIGAMVDALDR-YGAGAGGTRNISGTSHPHVLLE----RELADLHGKES-----ALLFTSGYVSNDAALSTLGKLL 130 (410)
T ss_pred CCHHHHHHHHHHHHH-cCCCCchhhhcccChHHHHHHH----HHHHHHhCCCC-----EEEECcHHHHHHHHHHHHhcCC
Confidence 589999999887754 3222222222 22222334444 88888888642 5999999887776777664 4
Q ss_pred CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhh---hcCCcEEEEc-CCC-CCCc
Q 023191 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT---LFRPKLIVAG-ASA-YARL 209 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~---~~~tk~v~i~-~~n-~g~~ 209 (286)
+||.|+.....|.++.. .+...|.++..++ .+ |++++++.+. ..+|++|+++ ++| +|..
T Consensus 131 ~g~~vi~~~~~h~s~~~--------~~~~~g~~~~~~~--~~------d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~ 194 (410)
T PRK13392 131 PGCVILSDALNHASMIE--------GIRRSGAEKQVFR--HN------DLADLEEQLASVDPDRPKLIAFESVYSMDGDI 194 (410)
T ss_pred CCCEEEEehhhhHHHHH--------HHHHcCCeEEEEe--CC------CHHHHHHHHHhccCCCCEEEEEeCCCCCCccc
Confidence 89988887666655432 2234454443332 11 4555655554 2378899997 555 7788
Q ss_pred cCHHHHHHHHHhcCCEEEEecccccccccc---CCCC-CC-CCcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 210 YDYERIRKVCNKQKAIMLADMAHISGLVAA---GVIP-SP-FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 210 ~~l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~~~-~~-~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
.|+++|.++|++|++++|+|++|+.|.... +... .. .+..|+++.|++|+|+++ ||++.+++++.+..+
T Consensus 195 ~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~-GG~~~~~~~~~~~l~ 268 (410)
T PRK13392 195 APIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL-GGYIAASADLIDFVR 268 (410)
T ss_pred ccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc-cchhhcCHHHHHHHH
Confidence 999999999999999999999999776531 1110 11 124689999999999764 588888887776555
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-16 Score=140.11 Aligned_cols=196 Identities=15% Similarity=0.120 Sum_probs=131.3
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|+.++|+ +|+.+++++.+.+.+.. +| +...+..+++ +.+++++|++++ +|++|+|++
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~Y------~~~~g~~~lr----~aia~~~~~~~~----~I~it~Ga~ 85 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARLGDLA--AY------PSTEDERRAR----AAVAARHGRTPD----EVLLLAGAA 85 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhHhh--cC------CCccchHHHH----HHHHHHhCcChh----hEEECCCHH
Confidence 367899989884 68889999988764311 23 3334555566 556666788775 599999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++..+++ +++| .+++.. |.|..+...+...|.+++.++ ++ +++.+|++.+ .+ ++++++++
T Consensus 86 ~al~~~~~--l~~~-~viv~~--------P~y~~~~~~~~~~G~~i~~v~--~~-~~~~~d~~~l----~~-~~~~i~l~ 146 (349)
T PRK07908 86 EGFALLAR--LRPR-RAAVVH--------PSFTEPEAALRAAGIPVHRVV--LD-PPFRLDPAAV----PD-DADLVVIG 146 (349)
T ss_pred HHHHHHHh--cCCC-eEEEeC--------CCChHHHHHHHHcCCEEEeec--cC-cccCcChhHh----cc-CCCEEEEc
Confidence 7765555 6775 455666 444444434556776665555 44 3478888754 34 78999997
Q ss_pred -CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC--CCc-ceEEEeCCCCCC--CCCCceEEEEecchh
Q 023191 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP--FEY-ADVVTTTTHKSL--RGPRGAMIFFRKGVK 275 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~--~~~-~D~v~~s~~K~l--~gp~gG~l~~~~~~~ 275 (286)
++| +|...+.++|.++|++ +.++|+|+++.. ..... .... ... ..+++.|++|+| .|.+.|+++.+.++.
T Consensus 147 np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~-~~~~~-~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~ 223 (349)
T PRK07908 147 NPTNPTSVLHPAEQLLALRRP-GRILVVDEAFAD-AVPGE-PESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVL 223 (349)
T ss_pred CCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchh-hccCC-ccccccccCCCEEEEeecccccCCccceeeeeecCHHHH
Confidence 777 8889999999999975 778999999753 12111 1110 111 235677999976 466779999988776
Q ss_pred hhhc
Q 023191 276 EINK 279 (286)
Q Consensus 276 ~~~~ 279 (286)
+..+
T Consensus 224 ~~~~ 227 (349)
T PRK07908 224 ARLT 227 (349)
T ss_pred HHHH
Confidence 5554
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=141.47 Aligned_cols=198 Identities=15% Similarity=0.079 Sum_probs=134.9
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +|+.+++++.+.+.......|+ . .+..+|++++.+++.+.+ ++++ +|++|+|++
T Consensus 20 ~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~------~-~~~~~Lr~aia~~~~~~~-~~~~----~i~it~Ga~~ 87 (335)
T PRK14808 20 DRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYY------D-SPDEELIEKILSYLDTDF-LSKN----NVSVGNGADE 87 (335)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCC------C-CChHHHHHHHHHHhCCCC-CCcc----eEEEcCCHHH
Confidence 56899999884 6889999988766431111122 2 245677766666655432 6664 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.+++.++ |.|++++ |.|+.|...+...|.+++.+| .+ +++.++... + . ++++++++
T Consensus 88 ~i~~~~~~~----d~v~v~~--------P~y~~~~~~~~~~g~~~~~v~--~~-~~~~~~~~~----~-~-~~~~i~i~n 146 (335)
T PRK14808 88 IIYVMMLMF----DRSVFFP--------PTYSCYRIFAKAVGAKFLEVP--LT-KDLRIPEVN----V-G-EGDVVFIPN 146 (335)
T ss_pred HHHHHHHHh----CcEEECC--------CCHHHHHHHHHHcCCeEEEec--CC-CcCCCChhH----c-c-CCCEEEEeC
Confidence 887677776 6799999 666666667778887776665 44 345555332 2 2 57888887
Q ss_pred CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCc--ceEEEeCCCCCCC--CCCceEEEEecchhhh
Q 023191 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEY--ADVVTTTTHKSLR--GPRGAMIFFRKGVKEI 277 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~--~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~ 277 (286)
|+| +|...+.+++.+++ +++++||+|+++.. ...... ...+.. .-+++.|++|+|+ |.|-|++++++++.+.
T Consensus 147 P~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~-f~~~~~-~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~ 223 (335)
T PRK14808 147 PNNPTGHVFEREEIERIL-KTGAFVALDEAYYE-FHGESY-VDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDA 223 (335)
T ss_pred CCCCCCCCcCHHHHHHHH-hcCCEEEEECchhh-hcCCch-HHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHH
Confidence 777 78889999999998 57999999999642 211110 010111 2377899999886 5566999999888776
Q ss_pred hcc
Q 023191 278 NKQ 280 (286)
Q Consensus 278 ~~~ 280 (286)
.++
T Consensus 224 l~~ 226 (335)
T PRK14808 224 YNR 226 (335)
T ss_pred HHH
Confidence 654
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-16 Score=139.34 Aligned_cols=178 Identities=20% Similarity=0.169 Sum_probs=118.5
Q ss_pred CCcchHHHHHHHHHHHHHHHCCCCCCCcc---eeEEeCCChH-HHHHHHHHhc--------CC-----CC-eEEeccCCC
Q 023191 85 GGNEYIDMAESLCQKRALEAFRLDPEKWG---VNVQSLSGSP-SNFQVYTALL--------KP-----HD-RIMALDLPH 146 (286)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~v~~~sG~~-a~~~~l~a~~--------~~-----Gd-~Vl~~~~~~ 146 (286)
..++...++|+++.+|+++++|.+.+... ..-++|+|++ +++.++.+.- .. +. .|++.+..|
T Consensus 72 ~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH 151 (373)
T PF00282_consen 72 EASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAH 151 (373)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-
T ss_pred ccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 33467889999999999999999832100 2356667777 7765543331 11 23 344444445
Q ss_pred CcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--C---CcEEEEc--CCCCCCccCHHHHHHHH
Q 023191 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--R---PKLIVAG--ASAYARLYDYERIRKVC 219 (286)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~---tk~v~i~--~~n~g~~~~l~~I~~ia 219 (286)
.+.. +.+.+.|..++.+| ++ +++.+|+++|++++.+. + |-+|+.+ .+++|...|+++|+++|
T Consensus 152 ~S~~--------Kaa~~lGlg~~~I~--~~-~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~ 220 (373)
T PF00282_consen 152 YSIE--------KAARILGLGVRKIP--TD-EDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADIC 220 (373)
T ss_dssp THHH--------HHHHHTTSEEEEE---BB-TTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHH
T ss_pred cHHH--------HhcceeeeEEEEec--CC-cchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhc
Confidence 4443 25667887776676 55 57899999999988642 2 2234444 55588999999999999
Q ss_pred HhcCCEEEEeccccccccccCCC---CCCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 220 NKQKAIMLADMAHISGLVAAGVI---PSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 220 ~~~~~~vivD~a~~~g~~~~~~~---~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
+++++|++||+|++......... ...++.+|.++.++|||++.|.+ |++++|++
T Consensus 221 ~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~ 278 (373)
T PF00282_consen 221 EKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDK 278 (373)
T ss_dssp HHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSG
T ss_pred cccceeeeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecc
Confidence 99999999999966534332222 22344699999999999999999 99999985
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-16 Score=142.55 Aligned_cols=205 Identities=20% Similarity=0.202 Sum_probs=133.0
Q ss_pred CceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcc-cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 48 GLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 48 ~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+++..++- ..+|.+++++.+.+.. +..+..+.+. ++..+...+++ +.+++++|.+. .+++++|+.
T Consensus 48 ~~~~~s~dylgl~~~p~v~~a~~~~~~~-~~~~~~~s~~~~g~~~~~~~l~----~~la~~~g~~~-----~~~~~sG~~ 117 (407)
T PRK09064 48 VTVWCSNDYLGMGQHPKVIEAMIEALDR-CGAGAGGTRNISGTNHYHVELE----RELADLHGKEA-----ALVFTSGYV 117 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHH-cCCCCCCcCcCccCHHHHHHHH----HHHHHHhCCCc-----EEEECcHHH
Confidence 466654433 2588999999887765 3222222222 22333344444 77778888532 588899988
Q ss_pred HHHHHHHHhcC--CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh---cCCcE
Q 023191 124 SNFQVYTALLK--PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKL 198 (286)
Q Consensus 124 a~~~~l~a~~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~tk~ 198 (286)
++..++..+.. +++.|+.....|.+... ++...+.....+ + ..|++++++.++. .++++
T Consensus 118 an~~ai~~l~~~~~~~~i~~~~~~h~s~~~--------~~~~~~~~~~~~--~------~~d~~~le~~l~~~~~~~~~~ 181 (407)
T PRK09064 118 SNDATLSTLAKLIPDCVIFSDELNHASMIE--------GIRRSRCEKHIF--R------HNDVAHLEELLAAADPDRPKL 181 (407)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCcchHHHHH--------HHHHcCCcEEEE--C------CCCHHHHHHHHHhccCCCCeE
Confidence 87767776654 77766666555554432 222333333222 2 1378888887762 26788
Q ss_pred EEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEecccccccccc---CC-CCCCC-CcceEEEeCCCCCCCCCCceEEEEe
Q 023191 199 IVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA---GV-IPSPF-EYADVVTTTTHKSLRGPRGAMIFFR 271 (286)
Q Consensus 199 v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~-~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (286)
|+++ +.| .|...|+++|.++|++||+++|+|++|+.|.+.. +. ...++ ...|+++.+++|.|+ ..||+++++
T Consensus 182 v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~GG~~~~~ 260 (407)
T PRK09064 182 IAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFG-VMGGYIAGS 260 (407)
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhh-ccCceEecC
Confidence 9887 444 6788899999999999999999999998765421 11 00111 236899999999885 457999998
Q ss_pred cchhhhhc
Q 023191 272 KGVKEINK 279 (286)
Q Consensus 272 ~~~~~~~~ 279 (286)
+++.+.++
T Consensus 261 ~~~~~~l~ 268 (407)
T PRK09064 261 AALVDAVR 268 (407)
T ss_pred HHHHHHHH
Confidence 88776654
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.3e-17 Score=144.75 Aligned_cols=199 Identities=14% Similarity=0.109 Sum_probs=128.6
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCc---chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC-hH-
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGN---EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SP- 123 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG-~~- 123 (286)
++|++|....|+.|++++.+++.+ +. +++...+..+ ....++-+.+|+.+++++|++.+. +|++++| +|
T Consensus 1 ~~~~pGp~~~p~~V~~a~~~~~~~-~~--~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~---~vvf~~gs~T~ 74 (355)
T cd00611 1 INFSAGPAALPEEVLEQAQKELLD-FN--GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNY---KVLFLQGGATG 74 (355)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhh-cc--cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCCchH
Confidence 468888888999999999998854 21 2222122222 233466677899999999984332 5888877 66
Q ss_pred HHHHHHHHhcC---CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCC-CCC-HHHHHHHhhhcCCcE
Q 023191 124 SNFQVYTALLK---PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG-YID-YDQLEKSATLFRPKL 198 (286)
Q Consensus 124 a~~~~l~a~~~---~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~d-~e~l~~~i~~~~tk~ 198 (286)
++.+++.+++. +||.|++- ++.......++..|.+++.++. + +++ ..+ .+..+..+++ ++++
T Consensus 75 a~~~~~~~l~~~~~~~~~i~~g---------~~~~~~~~~a~~~g~~~~~~~~--~-~~g~~~~~~~~~~~~~~~-~~~l 141 (355)
T cd00611 75 QFAAVPLNLLGDKGTADYVVTG---------AWSAKAAKEAKRYGGVVVIVAA--K-EEGKYTKIPDVETWDLAP-DAAY 141 (355)
T ss_pred HHHHHHHhcCCCCCeEEEEECC---------HHHHHHHHHHHhcCCCcEEEec--c-cccCCCCCCCHhhcCCCC-CCCE
Confidence 77778888877 55555442 2211000112334555666653 2 221 113 2222233555 8999
Q ss_pred EEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchh
Q 023191 199 IVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (286)
Q Consensus 199 v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (286)
|.++ .+| +|... . ++++.||+++++|++|++|..+.++... |++++|+||+| ||.| |++++++++.
T Consensus 142 V~~~h~~t~tG~~~--~---~i~~~~g~~~~VDa~qs~g~~~idv~~~-----~~~~ss~~K~l-GP~G~g~l~~~~~~~ 210 (355)
T cd00611 142 VHYCSNETIHGVEF--D---EVPDTGGVPLVADMSSNILSRPIDVSKF-----GVIYAGAQKNL-GPAGVTVVIVRKDLL 210 (355)
T ss_pred EEEeCCcccccEEc--c---eecccCCCeEEEEccccccCCCCCHHHh-----CEEEeeccccc-CCCceEEEEECHHHH
Confidence 9886 555 66542 2 4556699999999999999998777553 35667799976 7999 9999999766
Q ss_pred hh
Q 023191 276 EI 277 (286)
Q Consensus 276 ~~ 277 (286)
+.
T Consensus 211 ~~ 212 (355)
T cd00611 211 GK 212 (355)
T ss_pred hh
Confidence 44
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=142.17 Aligned_cols=170 Identities=14% Similarity=0.060 Sum_probs=118.6
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCC-CeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
+++.+++++|++++ +|++|+|++ ++..++.+++++| |.|++++ |.|..+...+...|.+++.+++.
T Consensus 64 lr~~ia~~~~~~~~----~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~--------p~y~~~~~~~~~~g~~~~~v~~~ 131 (364)
T PRK04781 64 LRSALAALYGCAPE----QLLIGRGSDEAIDLLVRALCVPGRDAVLVTP--------PVFGMYAVCARLQNAPLVEVPLV 131 (364)
T ss_pred HHHHHHHHhCcChH----HEEEeCCHHHHHHHHHHHhcCCCCCeEEEcC--------CChHHHHHHHHHcCCEEEEEecC
Confidence 44667777788774 599999999 7777889999999 7999998 55544444445667767666643
Q ss_pred cCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHh--cCCEEEEeccccccccccCCCCCC-CCc-
Q 023191 175 LNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSP-FEY- 248 (286)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~~~~~-~~~- 248 (286)
.+.+++.+|++++.+.+...++++|+++ |+| +|...+.+++.++++. ++++||+|+++.. ..... .... ...
T Consensus 132 ~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~-f~~~~-~~~~~~~~~ 209 (364)
T PRK04781 132 DGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGE-FSDVP-SAVGLLARY 209 (364)
T ss_pred CCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchh-hcCCc-chHHHHhhC
Confidence 2223467899998765533389999997 666 7788888888777764 4789999999642 22110 0000 011
Q ss_pred -ceEEEeCCCCCCC--CCCceEEEEecchhhhhcc
Q 023191 249 -ADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 249 -~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~~ 280 (286)
.-+++.|++|.|+ |.|-|++++++++.+..++
T Consensus 210 ~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~ 244 (364)
T PRK04781 210 DNLAVLRTLSKAHALAAARIGSLIANAELIAVLRR 244 (364)
T ss_pred CCEEEEecChhhcccccceeeeeeCCHHHHHHHHh
Confidence 2377999999874 6677999999887766553
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=135.60 Aligned_cols=179 Identities=14% Similarity=0.125 Sum_probs=120.6
Q ss_pred cCceecCCCCC-CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 47 KGLELIPSENF-TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 47 ~~i~L~~~e~~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
+.++|+.++|+ +|+.+.+++.+++.. . .+|+. ... +++++++++|. +|++|+|++ +
T Consensus 9 ~~i~l~~~~np~~p~~~~~a~~~~~~~-~-~~yp~---------~~~----l~~~ia~~~~~-------~I~vt~G~~~a 66 (311)
T PRK08354 9 GLIDFSASVNPYPPEWLDEMFERAKEI-S-GRYTY---------YEW----LEEEFSKLFGE-------PIVITAGITEA 66 (311)
T ss_pred ceeEecCCCCCCCCHHHHHHHHHHHHH-h-hcCCC---------hHH----HHHHHHHHHCC-------CEEECCCHHHH
Confidence 46889989885 477888888776543 1 12331 223 44777777772 399999999 7
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-C
Q 023191 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (286)
Q Consensus 125 ~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~ 203 (286)
+..++ .++.+||+|++++ |.|+.+...+...|.++ ++ ..+|++.+++.+. ++++++++ |
T Consensus 67 l~~~~-~~~~~gd~vlv~~--------P~y~~~~~~~~~~g~~~--~~-------~~~d~~~l~~~~~--~~~~vi~~~P 126 (311)
T PRK08354 67 LYLIG-ILALRDRKVIIPR--------HTYGEYERVARFFAARI--IK-------GPNDPEKLEELVE--RNSVVFFCNP 126 (311)
T ss_pred HHHHH-HhhCCCCeEEEeC--------CCcHHHHHHHHHcCCEE--ee-------cCCCHHHHHHhhc--CCCEEEEecC
Confidence 66455 4455999999999 55555554556677544 22 1357889988775 46777776 7
Q ss_pred CC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCC--CCCCceEEEE
Q 023191 204 SA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL--RGPRGAMIFF 270 (286)
Q Consensus 204 ~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l--~gp~gG~l~~ 270 (286)
+| +|...+ +++|+++|+++|+++|+|+++. .....+... . ...-+++.|++|+| .|.+-|++++
T Consensus 127 ~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~-~f~~~~~~~-~-~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 127 NNPDGKFYNFKELKPLLDAVEDRNALLILDEAFI-DFVKKPESP-E-GENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred CCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcch-hcccccccc-C-CCcEEEEeccHhhcCCccceeeeeee
Confidence 66 775554 6677888899999999999963 332222111 1 12447789999987 4556699887
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-16 Score=154.06 Aligned_cols=175 Identities=16% Similarity=0.113 Sum_probs=124.5
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh----cCCCC----eEEeccCCCCcccCccccccc
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL----LKPHD----RIMALDLPHGGHLSHGYQTDT 158 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~----~~~Gd----~Vl~~~~~~~~~~~~~~~~~~ 158 (286)
+++..++..++.+++++++|.+. ..++..+|+.+.++.+.++ .++|| +|++++..|+++...
T Consensus 537 ~qG~l~~i~e~q~~l~eltG~d~----~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~s------ 606 (954)
T PRK05367 537 AAGYRELIDQLEAWLAEITGYDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPAS------ 606 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC----EEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHH------
Confidence 35677888889999999999875 2344333433554433333 35666 599999999887542
Q ss_pred cccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCCCCC-ccCHHHHHHHHHhcCCEEEEeccccc
Q 023191 159 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASAYAR-LYDYERIRKVCNKQKAIMLADMAHIS 234 (286)
Q Consensus 159 ~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n~g~-~~~l~~I~~ia~~~~~~vivD~a~~~ 234 (286)
+.+.|.+++.++ .+ .++.+|+++|+++++++ ++.+|+++ ++..|. ..|+++|+++||++|+++++|+||..
T Consensus 607 --a~~~G~~vv~v~--~d-~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~ 681 (954)
T PRK05367 607 --AVMAGMKVVVVA--CD-ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMN 681 (954)
T ss_pred --HHHCCCEEEEEC--CC-CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChh
Confidence 345676676665 44 45899999999999763 45667676 444664 47899999999999999999999987
Q ss_pred cccccCCCCCCCCcceEEEeCCCCCCCCCCc------eEEEEecchhhhh
Q 023191 235 GLVAAGVIPSPFEYADVVTTTTHKSLRGPRG------AMIFFRKGVKEIN 278 (286)
Q Consensus 235 g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g------G~l~~~~~~~~~~ 278 (286)
+.+.... ..--|+|++++++||||++|.| |++++++.+...+
T Consensus 682 al~~l~~--pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~l 729 (954)
T PRK05367 682 AQVGLAR--PGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFL 729 (954)
T ss_pred hccCCCC--hhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccC
Confidence 6654331 1112699999999999865554 5899987665443
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=140.22 Aligned_cols=207 Identities=11% Similarity=0.091 Sum_probs=136.6
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH--HH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP--SN 125 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~--a~ 125 (286)
.+.|++|...+|+.|++++...+.+..+.+..............++-+.+++.+++++|.+.+. .|++++|+. ++
T Consensus 4 ~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~---~v~~~~gsgt~~~ 80 (360)
T PRK05355 4 VYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNY---KVLFLQGGASLQF 80 (360)
T ss_pred eeeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCc---EEEEEcCCchHHH
Confidence 3567888888999999999887643111110000000112234477778899999999983322 466655554 88
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHH-HhhhcCCcEEEEc--
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEK-SATLFRPKLIVAG-- 202 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~-~i~~~~tk~v~i~-- 202 (286)
.+++..++.+||++++.....-++ .+ ...++..|.. ..+. .+...+..+..++++ .+++ ++++|.++
T Consensus 81 Ea~~~nl~~~g~~~l~i~~G~fg~---r~---~~~a~~~g~~-~~~~--~~~~~g~~~~~~~~~~~l~~-~~~~V~~th~ 150 (360)
T PRK05355 81 AMVPMNLLGGGKKADYVDTGSWSK---KA---IKEAKKYGEV-NVAA--SSEDDGFTYIPPLDEWQLSD-DAAYVHYTSN 150 (360)
T ss_pred HHHHHhcCCCCCeEEEEECCHHHH---HH---HHHHHHhCCc-eEEe--cccccCCCCCCChhhccCCC-CCCEEEEccC
Confidence 889999999999999876211111 11 1123444532 3333 221134445445555 6666 89999886
Q ss_pred CCCCCCcc-CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 203 ASAYARLY-DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 203 ~~n~g~~~-~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
.+++|... |+++| +|+++++|++|++|..+.++.. .|++++|+||+| ||.| |++++++++.+..+
T Consensus 151 eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~-----~d~~~~ssqK~l-gP~Glg~l~~s~~~l~~~~ 217 (360)
T PRK05355 151 ETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSK-----FGLIYAGAQKNI-GPAGLTIVIVREDLLGRAL 217 (360)
T ss_pred CCcceEecCccccc------CCCcEEEEcCccccCccCCHHH-----ccEEEEeccccc-cCCceEEEEECHHHHhhcc
Confidence 44478776 67666 8999999999999998877653 469999999988 5999 99999998765543
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.1e-16 Score=149.52 Aligned_cols=165 Identities=17% Similarity=0.135 Sum_probs=120.6
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhc--------CCCCeEEeccCCCCcccCccccccc
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--------KPHDRIMALDLPHGGHLSHGYQTDT 158 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~--------~~Gd~Vl~~~~~~~~~~~~~~~~~~ 158 (286)
+++..++-.++.+++++++|.+. +.+...+|+.+.++.++++- ...++|+++...|+++..+
T Consensus 538 sQG~lq~i~elq~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas------ 607 (954)
T PRK12566 538 AEGYRAMIDELEAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS------ 607 (954)
T ss_pred hcCHHHHHHHHHHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH------
Confidence 45555666667799999999987 45777788877766666652 2346788999999888432
Q ss_pred cccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCCCC-CccCHHHHHHHHHhcCCEEEEeccccc
Q 023191 159 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASAYA-RLYDYERIRKVCNKQKAIMLADMAHIS 234 (286)
Q Consensus 159 ~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n~g-~~~~l~~I~~ia~~~~~~vivD~a~~~ 234 (286)
+...|.+++.++ .+ +++.+|+++|+++++++ ++++|.++ +++.| ...++++|+++||++|++|++|++|..
T Consensus 608 --a~~~GieVv~Vp--~D-~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~ 682 (954)
T PRK12566 608 --AQMAGMRVVIVE--CD-PDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLN 682 (954)
T ss_pred --HHHCCCEEEEec--cC-CCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChh
Confidence 234566666565 55 56899999999999732 55666666 44455 446699999999999999999999987
Q ss_pred cccccCC-CCCCCCcceEEEeCCCCCCCCCCc-eEEE
Q 023191 235 GLVAAGV-IPSPFEYADVVTTTTHKSLRGPRG-AMIF 269 (286)
Q Consensus 235 g~~~~~~-~~~~~~~~D~v~~s~~K~l~gp~g-G~l~ 269 (286)
+...... ... |+|++++++||||++|.| |..+
T Consensus 683 a~~~l~~Pg~~---GADi~~~s~HKtf~~P~G~GGP~ 716 (954)
T PRK12566 683 AQVGLARPADI---GADVSHMNLHKTFCIPHGGGGPG 716 (954)
T ss_pred hccCCCChhhc---CCCEEEecCCcccCcCccCCCCc
Confidence 6654332 122 599999999999987766 5443
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=139.19 Aligned_cols=195 Identities=22% Similarity=0.215 Sum_probs=130.3
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcc-cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~-- 134 (286)
.+|++++++.+.+.. |..+..+.+. ++..+...+ +.+.+++++|.+. .+++++|+.++..++..+..
T Consensus 60 ~~p~v~~a~~~~~~~-~~~~~~~s~~~~g~~~~~~~----Le~~la~~~g~~~-----~l~~~sG~~an~~ai~~l~~~~ 129 (402)
T TIGR01821 60 QHPEVLQAMHETLDK-YGAGAGGTRNISGTNIPHVE----LEAELADLHGKES-----ALVFTSGYVANDATLATLAKII 129 (402)
T ss_pred CCHHHHHHHHHHHHH-cCCCCcchhhhhCCcHHHHH----HHHHHHHHhCCCe-----EEEECchHHHHHHHHHHhhCCC
Confidence 488999999988865 4333322222 222333344 4488888888643 58899998888878777754
Q ss_pred CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh---cCCcEEEEc-CCC-CCCc
Q 023191 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVAG-ASA-YARL 209 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~tk~v~i~-~~n-~g~~ 209 (286)
+|+.|+.....|.+.... +...|.....+ + ..|++++++.++. .++++|+++ +.| +|..
T Consensus 130 ~~~~v~~~~~~h~s~~~~--------~~~~g~~~~~~--~------~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~ 193 (402)
T TIGR01821 130 PGCVIFSDELNHASMIEG--------IRHSGAEKFIF--R------HNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDI 193 (402)
T ss_pred CCCEEEEcchHhHHHHHH--------HHHcCCeEEEE--C------CCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCc
Confidence 778777766566554332 22334333222 1 2377888887763 257888887 444 7788
Q ss_pred cCHHHHHHHHHhcCCEEEEecccccccccc---CCC-CCCC-CcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 210 YDYERIRKVCNKQKAIMLADMAHISGLVAA---GVI-PSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 210 ~~l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~~-~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
.|+++|.++|++||+++|+|++|+.|.... +.. ..++ ...|+++.+++|.|++ .||++++++++.+..+
T Consensus 194 ~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~i~~~~~~~~~l~ 267 (402)
T TIGR01821 194 APIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGV-VGGYIAASRKLIDAIR 267 (402)
T ss_pred cCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhcc-CCceeecCHHHHHHHH
Confidence 999999999999999999999999775421 111 1111 1368999999999865 5688888888776655
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=137.05 Aligned_cols=161 Identities=19% Similarity=0.116 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEE
Q 023191 92 MAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 171 (286)
Q Consensus 92 ~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 171 (286)
++-+.+++.+++++|.+. .+++++|+.++..++..+.++||.|++...+|.+...+... ..+. .+
T Consensus 56 ~~~~~~e~~la~~~~~~~-----~l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~-------~~~~---~~ 120 (370)
T PRK05937 56 SLLDDLEHKIAHFHGAPE-----AFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV-------ISGW---HQ 120 (370)
T ss_pred HHHHHHHHHHHHHhCCCe-----EEEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH-------cCCc---eE
Confidence 444455688999999854 48999999988766666678899999888888887654321 1111 12
Q ss_pred ecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCC--
Q 023191 172 PYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI-- 242 (286)
Q Consensus 172 ~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-- 242 (286)
.++ ..|++++++++++. ++++|+++ .+| +|.+.|+++|.++|+++|+++++|++|+.|.+..+..
T Consensus 121 ~~~------~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~ 194 (370)
T PRK05937 121 SFR------HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGF 194 (370)
T ss_pred Eec------CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCch
Confidence 222 35899999988731 34566666 444 7899999999999999999999999999887764431
Q ss_pred --CCCCCcceEEEeCCCCCCCCCCceEEEEecch
Q 023191 243 --PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGV 274 (286)
Q Consensus 243 --~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~ 274 (286)
.+.+...++++.|++|.+ ||.|+.+++.++.
T Consensus 195 ~~~~~~~~~~~~~~tlsK~~-g~~G~~vl~~~~~ 227 (370)
T PRK05937 195 CHSLGYENFYAVLVTYSKAL-GSMGAALLSSSEV 227 (370)
T ss_pred HHhhCCCCCcEEEEechhhh-hcCceEEEcCHHH
Confidence 122222346778999976 6677445555543
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=138.78 Aligned_cols=193 Identities=18% Similarity=0.203 Sum_probs=130.6
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd 137 (286)
+.++++++|.+.... . ..|+......+++ +.++++||.+. .+++.+|+.++..++++++.|++
T Consensus 7 ~~~~m~~a~~~a~~g-----d---~~Yg~D~~~~~l~----~~i~~l~g~e~-----a~f~~sGT~An~~al~~~~~~~~ 69 (290)
T PF01212_consen 7 PTPAMLEAMAAANVG-----D---DAYGEDPTTARLE----ERIAELFGKEA-----ALFVPSGTMANQLALRAHLRPGE 69 (290)
T ss_dssp S-HHEEHHHHHTTSB---------CCTTSSHHHHHHH----HHHHHHHTSSE-----EEEESSHHHHHHHHHHHHHHTTE
T ss_pred CCHHHHHHHHccccC-----C---cccCCChhHHHHH----HHHHHHcCCCE-----EEEeCCCChHHHHHHHHHHhcCC
Confidence 778888888554322 1 1256666777777 77888889875 36666666699999999999999
Q ss_pred eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh-----cCCcEEEEc-CCCC--CCc
Q 023191 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVAG-ASAY--ARL 209 (286)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-----~~tk~v~i~-~~n~--g~~ 209 (286)
.|+..+..|..+...+. ...+.|.++..+ +.+ +++.+|+++|++.+.. .+|++|+++ ++|. |.+
T Consensus 70 ~vi~~~~aHi~~~E~ga-----~~~~~G~~~~~l--~~~-~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~ 141 (290)
T PF01212_consen 70 SVICADTAHIHFDETGA-----IEELSGAKLIPL--PSD-DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTV 141 (290)
T ss_dssp EEEEETTEHHHHSSTTH-----HHHHTTCEEEEE--BEC-TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB-
T ss_pred ceeccccceeeeeccch-----hhHhcCcEEEEC--CCc-ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCee
Confidence 99998854433322221 124566555444 333 3389999999999976 357899997 6666 655
Q ss_pred c---CHHHHHHHHHhcCCEEEEeccccccccc-cCCCCC-CCCcceEEEeCCCCCCCCCCceEEEEecchh
Q 023191 210 Y---DYERIRKVCNKQKAIMLADMAHISGLVA-AGVIPS-PFEYADVVTTTTHKSLRGPRGAMIFFRKGVK 275 (286)
Q Consensus 210 ~---~l~~I~~ia~~~~~~vivD~a~~~g~~~-~~~~~~-~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~ 275 (286)
. ++++|.++|++||+.|+.|+|..+.... .+.... -..++|++.+|++|.++.|.|++|++++++.
T Consensus 142 ~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i 212 (290)
T PF01212_consen 142 YSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFI 212 (290)
T ss_dssp --HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEechHHH
Confidence 5 5778889999999999999996533221 011000 0135999999999999999999999999853
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.3e-16 Score=148.01 Aligned_cols=164 Identities=18% Similarity=0.108 Sum_probs=125.5
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
+..+..++.||++. ..++++|+| ++.+++++++++||+|++....|.|.+. ++.+.|..++.++-.
T Consensus 209 eAq~~aA~~fgA~~-----t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~--------al~L~ga~Pvyl~P~ 275 (755)
T PRK15029 209 ESEKYAARVFGADR-----SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ--------GLILTGAKPVYMVPS 275 (755)
T ss_pred HHHHHHHHHhCCCc-----EEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHH--------HHHHcCCeEEEeccc
Confidence 35588999999986 488899999 9999999999999999999999998876 445677666555322
Q ss_pred cCCCC---CCCC-----HHHHHHHhhhc-CCc--------EEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccc
Q 023191 175 LNEST---GYID-----YDQLEKSATLF-RPK--------LIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGL 236 (286)
Q Consensus 175 ~~~~~---~~~d-----~e~l~~~i~~~-~tk--------~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~ 236 (286)
.+ +. +.++ ++.+++++.++ .+| +++++.++ .|.+.++++|+++|++++++|++|+||++..
T Consensus 276 ~~-~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~ 354 (755)
T PRK15029 276 RN-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_pred cc-ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECcccccc
Confidence 22 11 2334 89999988652 234 88887566 7899999999999999999999999998765
Q ss_pred cccCCCC--CCC-------Ccce-EEEeCCCCCCCCCCc-eEEEEecc
Q 023191 237 VAAGVIP--SPF-------EYAD-VVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 237 ~~~~~~~--~~~-------~~~D-~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
......+ ..+ .|+| +++-|+||++++... ++|-++.+
T Consensus 355 ~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~ 402 (755)
T PRK15029 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG 402 (755)
T ss_pred ccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence 4333222 223 3688 999999999988755 88888665
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.8e-16 Score=137.09 Aligned_cols=191 Identities=18% Similarity=0.157 Sum_probs=121.9
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
+.++|..++++.++.+.+...+.+ . . |+...+ .+++ +++++++|++++ +|++|+|++ ++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~------y~~~~~-~~lr----~~la~~~~~~~~----~i~~t~G~~~~i 77 (330)
T TIGR01140 18 DWLDFSTGINPLGPPVPPIPASAW-A----R------YPDPEY-DELR----AAAAAYYGLPAA----SVLPVNGAQEAI 77 (330)
T ss_pred heeEccccCCCCCCChhhcchHHH-h----h------CCCccH-HHHH----HHHHHHhCCChh----hEEECCCHHHHH
Confidence 458888888764433333222211 1 1 222232 4555 777777888764 599999999 66
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CC
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~ 204 (286)
.++ ..++.+| .|++.+|.|..+. ......|.+++.++ |++++++.+. ++++++++ |+
T Consensus 78 ~~~-~~~l~~g-~vl~~~p~y~~~~--------~~~~~~g~~~~~~~----------d~~~l~~~~~--~~~~v~i~~p~ 135 (330)
T TIGR01140 78 YLL-PRLLAPG-RVLVLAPTYSEYA--------RAWRAAGHEVVELP----------DLDRLPAALE--ELDVLVLCNPN 135 (330)
T ss_pred HHH-HHHhCCC-eEEEeCCCcHHHH--------HHHHHcCCEEEEeC----------CHHHHHhhcc--cCCEEEEeCCC
Confidence 644 4457888 6898886555443 23345554443332 7899999883 57888776 77
Q ss_pred C-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC-CCCcceEEEeCCCCCCCCC--CceEEEEecchhhh
Q 023191 205 A-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-PFEYADVVTTTTHKSLRGP--RGAMIFFRKGVKEI 277 (286)
Q Consensus 205 n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~-~~~~~D~v~~s~~K~l~gp--~gG~l~~~~~~~~~ 277 (286)
| +|...+ +++|+++|+++|+++|+|+++............ .....++++.|++|+|+.| +.|++++++++.+.
T Consensus 136 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~ 215 (330)
T TIGR01140 136 NPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLAR 215 (330)
T ss_pred CCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHHH
Confidence 7 777777 667788899999999999997532211111100 0012568899999988644 23999998887665
Q ss_pred hc
Q 023191 278 NK 279 (286)
Q Consensus 278 ~~ 279 (286)
.+
T Consensus 216 l~ 217 (330)
T TIGR01140 216 LR 217 (330)
T ss_pred HH
Confidence 55
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-15 Score=136.07 Aligned_cols=197 Identities=18% Similarity=0.213 Sum_probs=139.3
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCC-cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGG-NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~--- 133 (286)
..|.++++..+++.. |..+..+.+...+ .....+|| +.+++++|.+. .+++.+|..+++.++.++.
T Consensus 117 ~~p~v~~a~~~ai~~-yG~g~~gSrl~~G~~~~h~~LE----~~LA~f~g~e~-----all~sSGy~AN~~~i~aL~~~~ 186 (476)
T PLN02955 117 SHPTISNAAANAAKE-YGMGPKGSALICGYTTYHRLLE----SSLADLKKKED-----CLVCPTGFAANMAAMVAIGSVA 186 (476)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCCcCccccChHHHHHHH----HHHHHHHCCCc-----EEEECChHHHHHHHHHHHhhcc
Confidence 378899999888865 6545555544433 34445566 78888889875 5999999999998888872
Q ss_pred -----------CCCCeEEeccCCCCcccCcccccccccccccee--eeEEEecccCCCCCCCCHHHHHHHhhhc--CCcE
Q 023191 134 -----------KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI--FFETMPYRLNESTGYIDYDQLEKSATLF--RPKL 198 (286)
Q Consensus 134 -----------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~ 198 (286)
+++|.|+.....|.+... ++.+... ....+.++.+ |+++|+++++.. +.++
T Consensus 187 ~~~~~~~~~~~~~~d~i~~D~~~HaSI~d--------G~~ls~~~~~a~~~~f~HN------D~~~Le~~L~~~~~~~~~ 252 (476)
T PLN02955 187 SLLAASGKPLKNEKVAIFSDALNHASIID--------GVRLAERQGNVEVFVYRHC------DMYHLNSLLSSCKMKRKV 252 (476)
T ss_pred ccccccccccCCCCcEEEEeccchHHHHH--------HHHhccccCCceEEEeCCC------CHHHHHHHHHhCCCCceE
Confidence 456677777777776653 3333311 1222333333 899999988642 3345
Q ss_pred EEEc--CCCCCCccCHHHHHHHHHhcCCEEEEecccccccccc---CCC-CCCC-CcceEEEeCCCCCCCCCCceEEEEe
Q 023191 199 IVAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA---GVI-PSPF-EYADVVTTTTHKSLRGPRGAMIFFR 271 (286)
Q Consensus 199 v~i~--~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~~-~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (286)
|++. +++.|...|+++|.++|++||+++|+|+||+.|.+.. +.. ..++ ...|++++|+.|.| |-.||+++++
T Consensus 253 Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~-G~~GGfi~gs 331 (476)
T PLN02955 253 VVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAA-GCHGGFIACS 331 (476)
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccch-hccCceeecH
Confidence 5554 6778899999999999999999999999999887653 111 1111 24789999999987 5679999999
Q ss_pred cchhhhhc
Q 023191 272 KGVKEINK 279 (286)
Q Consensus 272 ~~~~~~~~ 279 (286)
+++.++++
T Consensus 332 ~~~~~~l~ 339 (476)
T PLN02955 332 KKWKQLIQ 339 (476)
T ss_pred HHHHHHHH
Confidence 98888777
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=135.35 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+...+|+ +.++++.+ .+ .+++++|+.++.+++.+++++||+|+++++.|.++.... .......|.+
T Consensus 51 p~~~~Le----~~lA~l~~--~~----~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~----~~~l~~~G~~ 116 (366)
T PRK07582 51 PTWRALE----AALGELEG--AE----ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALA----REYLAPLGVT 116 (366)
T ss_pred ccHHHHH----HHHHHHcC--CC----EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHH----HHHHhcCeEE
Confidence 4455666 66666662 22 588888888777788899999999999985554432110 0011234655
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
++.++ .+ +. .+ .+.+ ++++|+++ |+| ++...++++|+++|+++|+++++|++|..+. +.. +
T Consensus 117 v~~v~--~~-~~----~~----~~~~-~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~---~~~--p 179 (366)
T PRK07582 117 VREAP--TA-GM----AE----AALA-GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPL---GQR--P 179 (366)
T ss_pred EEEEC--CC-Ch----HH----Hhcc-CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCcc---ccC--c
Confidence 55554 32 11 11 2334 79999997 666 4578899999999999999999999975321 111 2
Q ss_pred CC-cceEEEeCCCCCCCCCCc---eEEEEec-chhh
Q 023191 246 FE-YADVVTTTTHKSLRGPRG---AMIFFRK-GVKE 276 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~g---G~l~~~~-~~~~ 276 (286)
+. ++|+++.|+|||++||.| |++++++ ++.+
T Consensus 180 ~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~ 215 (366)
T PRK07582 180 LELGADLVVASDTKALTGHSDLLLGYVAGRDPELMA 215 (366)
T ss_pred hhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHH
Confidence 22 589999999999999765 8888754 4444
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=135.35 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=102.8
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
+++.+++++|.+ +|++|+|++ ++.+++ .+.|||+|++++ |+|+.+...+...|.+++.++ .
T Consensus 54 Lr~~ia~~~~~~------~I~it~Gs~~al~~~~--~~~~gd~v~v~~--------P~y~~~~~~~~~~g~~~~~v~--~ 115 (330)
T PRK05664 54 LEAAARAYYGAP------QLLPVAGSQAAIQALP--RLRAPGRVGVLS--------PCYAEHAHAWRRAGHQVRELD--E 115 (330)
T ss_pred HHHHHHHHhCCC------CEEECcCHHHHHHHHH--HccCCCEEEEcC--------CChHHHHHHHHHcCCeEEEec--h
Confidence 446777777753 499999999 666443 468999999999 666666656677786665443 2
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccccccc-CCCCCCCCc-
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA-GVIPSPFEY- 248 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~-~~~~~~~~~- 248 (286)
+++++.+. ++++++++ |+| +|...+ +++|+++|++++++||+|+++... ... .+. .+..
T Consensus 116 ---------~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~-~~~~s~~--~~~~~ 181 (330)
T PRK05664 116 ---------AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDN-TPQHSLA--ACAHR 181 (330)
T ss_pred ---------hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccC-CCccccc--ccccC
Confidence 24555553 67887776 777 776665 556667778999999999996422 110 111 1111
Q ss_pred -ceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 249 -ADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 249 -~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
.-+++.|++|.|+ |.|-|+++++.++.+..+
T Consensus 182 ~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~ 215 (330)
T PRK05664 182 PGLIVLRSFGKFFGLAGARLGFVLAEPALLRALA 215 (330)
T ss_pred CCEEEEeeccccccCCCcceEEEEeCHHHHHHHH
Confidence 2277999999874 556699999888776554
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.2e-15 Score=134.86 Aligned_cols=196 Identities=19% Similarity=0.207 Sum_probs=132.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCccc-CCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~-- 134 (286)
..|++++++.+.+.. +..+..+.+.. +..+ ....+.+.+++++|.+. .++++||++++..++.++..
T Consensus 60 ~~p~v~~a~~~~~~~-~~~~~~~s~~~~~~~~----~~~~le~~la~~~g~~~-----~~~~~SG~~An~~ai~~l~~~~ 129 (406)
T PRK13393 60 QHPAVLAAMHEALDT-CGAGAGGTRNISGTNH----YHVLLEAELADLHGKEA-----ALLFTSGYVSNWAALSTLGSRL 129 (406)
T ss_pred CCHHHHHHHHHHHHH-cCCCCcccccccCChH----HHHHHHHHHHHHhCCCc-----EEEeCCcHHHHHHHHHHhhcCC
Confidence 378999999998865 42232222221 2222 23345588888888643 59999999888878887755
Q ss_pred CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh---cCCcEEEEc-CCC-CCCc
Q 023191 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVAG-ASA-YARL 209 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~tk~v~i~-~~n-~g~~ 209 (286)
+||.|+.....|++...+. ...|.+...++ . .|++++++.+.. .++++|+++ +.| +|..
T Consensus 130 ~g~~I~~~~~~H~s~~~~~--------~~~g~~~~~~~--~------~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~ 193 (406)
T PRK13393 130 PGCVILSDELNHASMIEGI--------RHSRAEKRIFR--H------NDPADLERKLSDLDPHRPKLVAFESVYSMDGDI 193 (406)
T ss_pred CCCEEEEccchhHHHHHHH--------HHcCCeEEEeC--C------CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCch
Confidence 7888887777787765432 23343333232 1 367777777653 257888887 444 7789
Q ss_pred cCHHHHHHHHHhcCCEEEEecccccccccc---CCC-CCCC-CcceEEEeCCCCCCCCCCceEEEEecchhhhhcc
Q 023191 210 YDYERIRKVCNKQKAIMLADMAHISGLVAA---GVI-PSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 210 ~~l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~~-~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~ 280 (286)
.|+++|.++|++|++++++|++|+.|.+.. +.. ..++ ...|+++.++.|.|+. .||++++++++.+.+++
T Consensus 194 ~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~GG~~~~~~~~~~~l~~ 268 (406)
T PRK13393 194 APIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-MGGYITGSAALCDFIRS 268 (406)
T ss_pred hCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-cCceeeCCHHHHHHHHH
Confidence 999999999999999999999999776431 111 1111 1368889999999865 46888888887766553
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.5e-15 Score=134.78 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeee
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 168 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 168 (286)
....|+ +.++++.|.+. .+++++|+.++.+++.+++++||+|+++++.|+++..... ......|.++
T Consensus 84 t~~~Le----~~lA~leg~~~-----~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~----~~l~~~Gi~~ 150 (427)
T PRK07049 84 NSEIVE----DRLAVYEGAES-----AALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLA----KTFRNFGVGA 150 (427)
T ss_pred CHHHHH----HHHHHHhCCCc-----EEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH----HHHHhcCcEE
Confidence 345555 77778888653 4677777778887999999999999999966655422100 0112345433
Q ss_pred EEEecccCCCCCCCCHHHHHHHhh----hcCCcEEEEc-CCC-CCCccCHHHHHHHHHh------cCCEEEEeccccccc
Q 023191 169 ETMPYRLNESTGYIDYDQLEKSAT----LFRPKLIVAG-ASA-YARLYDYERIRKVCNK------QKAIMLADMAHISGL 236 (286)
Q Consensus 169 ~~v~~~~~~~~~~~d~e~l~~~i~----~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~------~~~~vivD~a~~~g~ 236 (286)
..++ + ..|++++++.+. +.++|+|+++ |+| +|.+.++++|.++|++ +++++++|++.....
T Consensus 151 v~~~---~----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~ 223 (427)
T PRK07049 151 VGFA---D----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPV 223 (427)
T ss_pred EEEe---C----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccc
Confidence 2232 1 246778877664 2379999997 666 7788999999999988 899999999954322
Q ss_pred cccCCCCCCCC-cceEEEeCCCCCCCCC---CceEEEEecchhhhhc
Q 023191 237 VAAGVIPSPFE-YADVVTTTTHKSLRGP---RGAMIFFRKGVKEINK 279 (286)
Q Consensus 237 ~~~~~~~~~~~-~~D~v~~s~~K~l~gp---~gG~l~~~~~~~~~~~ 279 (286)
. ..++. ++|+++.|++|+++|. ++|+++.++++.+..+
T Consensus 224 ~-----~~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~ 265 (427)
T PRK07049 224 F-----QKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVR 265 (427)
T ss_pred c-----CCccccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHH
Confidence 1 12333 5899999999999863 5599988877665544
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-15 Score=133.91 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=113.7
Q ss_pred cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccc
Q 023191 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISA 163 (286)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (286)
|+++....+|| +.+++++|.+. -|.+.+|+.|..+++...++|||+| +.+.|-. .. ...+..
T Consensus 67 yag~~s~~~lE----~~va~~~G~~~-----av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~---Tt----~ahIe~ 128 (450)
T TIGR02618 67 YAGSRNFYHLE----RTVRELYGFKY-----VVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFT---TT----RYHQEK 128 (450)
T ss_pred hcCCCcHHHHH----HHHHHHHCCCe-----EEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHH---HH----HHHHHh
Confidence 56667777888 77777889886 2455555556554666669999987 3422211 11 111344
Q ss_pred ceeeeEEEecc------c-CCCCCCCCHHHHHHHhhhc---CCcEEEEc-CCC-C-CCc---cCHHHHHHHHHhcCCEEE
Q 023191 164 VSIFFETMPYR------L-NESTGYIDYDQLEKSATLF---RPKLIVAG-ASA-Y-ARL---YDYERIRKVCNKQKAIML 227 (286)
Q Consensus 164 ~g~~~~~v~~~------~-~~~~~~~d~e~l~~~i~~~---~tk~v~i~-~~n-~-g~~---~~l~~I~~ia~~~~~~vi 227 (286)
.|..+.-++.+ . ++.++.+|++++++.|++. ++++|.+. ++| . |.. .++++|.++|++||+.||
T Consensus 129 ~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi 208 (450)
T TIGR02618 129 NGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVF 208 (450)
T ss_pred CCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEE
Confidence 55433223211 0 1346889999999999862 23455554 666 3 455 458999999999999999
Q ss_pred Eeccccccccc-c-----CCCCCC--------CCcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 228 ADMAHISGLVA-A-----GVIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 228 vD~a~~~g~~~-~-----~~~~~~--------~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
.|+||.++.-. . +....+ +.++|.+++|++|.+++|.||+|+++++
T Consensus 209 ~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d~ 268 (450)
T TIGR02618 209 YDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMNDD 268 (450)
T ss_pred EEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCCH
Confidence 99999985421 1 111111 2369999999999999999999998874
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-15 Score=128.66 Aligned_cols=168 Identities=17% Similarity=0.163 Sum_probs=123.7
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
++..+.+| ++++.+-|--. .+.+.||..|...++..++.+||+|+..+.-|++....... ...-.|+
T Consensus 61 NPT~~vlE----~RiAaLEGG~a-----a~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~----tl~~~Gi 127 (426)
T COG2873 61 NPTTDVLE----ERIAALEGGVA-----ALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSH----TLKRLGI 127 (426)
T ss_pred CchHHHHH----HHHHHhhcchh-----hhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHH----HHHhcCc
Confidence 44566777 66776665433 37778898888879999999999999999888876542211 1234454
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
+++.+ + ..|++.++++|++ +||+|++. -.| -+.+.|++.|+++||+|++++|||..-+.+.+ ..
T Consensus 128 ~v~fv--d------~~d~~~~~~aI~~-nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-----~r 193 (426)
T COG2873 128 EVRFV--D------PDDPENFEAAIDE-NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-----CR 193 (426)
T ss_pred EEEEe--C------CCCHHHHHHHhCc-ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee-----cc
Confidence 44333 2 2379999999999 99999996 555 33788999999999999999999998544422 23
Q ss_pred CCC-cceEEEeCCCCCCCCCCc--eEEEEecchhhhhccC
Q 023191 245 PFE-YADVVTTTTHKSLRGPRG--AMIFFRKGVKEINKQG 281 (286)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~g--G~l~~~~~~~~~~~~~ 281 (286)
|++ |+|+|+.|.+||++|... |.+++...-.||.+.+
T Consensus 194 P~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~ 233 (426)
T COG2873 194 PIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANG 233 (426)
T ss_pred hhhcCCCEEEEeecccccCCccccceEEEeCCccccccCC
Confidence 444 699999999999988644 7777777777776543
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-15 Score=132.84 Aligned_cols=195 Identities=13% Similarity=0.091 Sum_probs=130.6
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCC---cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC-hH-HHHHHHHHh
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGG---NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SP-SNFQVYTAL 132 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG-~~-a~~~~l~a~ 132 (286)
.|..|++++.+++.+ ++ ..+...+.- .....++-+.+++.++++++.+.+. +|++++| ++ ++.+++..+
T Consensus 3 ~p~~v~~~~~~~~~~-~~--~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~---~v~~~~gsgT~a~ea~~~nl 76 (349)
T TIGR01364 3 LPEEVLEQAQKELLN-FN--GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNY---EVLFLQGGATGQFAAVPLNL 76 (349)
T ss_pred CCHHHHHHHHHHHhC-cc--CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCCchHHHHHHHHhc
Confidence 588999999988865 21 111111111 2223467778899999999974332 4777666 44 888899999
Q ss_pred cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-CCCCCCHHHHHHHhhhcCCcEEEEc--CCCCCCc
Q 023191 133 LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVAG--ASAYARL 209 (286)
Q Consensus 133 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~tk~v~i~--~~n~g~~ 209 (286)
+++||++++.....-++ .+ ...++..|. +..+..+-.. ....+|+++++ +++ ++++|.++ .+.+|..
T Consensus 77 ~~~~~~~l~i~~G~fg~---r~---~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~th~ETstGv~ 146 (349)
T TIGR01364 77 LAEGKVADYIVTGAWSK---KA---AKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISE-DAAYVHYCANETIHGVE 146 (349)
T ss_pred CCCCCeEEEEECCHHHH---HH---HHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCC-CCCEEEEcCCCCcccEe
Confidence 99999999876222111 11 123445565 4444322111 22356777665 344 78998886 4447765
Q ss_pred cCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 210 YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 210 ~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
.+ ++++.+++++++|+++++|..+.++.. .|++++|+||+| ||.| |++++++++.+..+
T Consensus 147 ~~-----~l~~~~~~l~iVDavss~g~~~id~~~-----~d~~~~ssqK~l-gP~Glg~l~~s~~~~~~~~ 206 (349)
T TIGR01364 147 FR-----ELPDVKNAPLVADMSSNILSRPIDVSK-----FGLIYAGAQKNI-GPAGLTVVIVRKDLLGRAS 206 (349)
T ss_pred cc-----eecccCCCeEEEEccccccCccCCHHH-----ccEEEEeccccc-CCCceEEEEECHHHHhhcc
Confidence 55 677778999999999999998877653 469999999988 5999 99999998765443
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.5e-15 Score=127.13 Aligned_cols=194 Identities=19% Similarity=0.266 Sum_probs=134.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd 137 (286)
+.|+++++|.++-.. +..-|+..+....++ +++++++|... -+++.+|+.+|..++.+.+.||+
T Consensus 12 ~~~~m~eam~~a~~~-------~~~~YG~D~~~~~~e----~~~ae~~g~~a-----~~Fv~sGT~aN~lal~~~~~~~~ 75 (342)
T COG2008 12 PTPEMREALAAANAV-------GDDVYGEDPTTNALE----QRIAELFGKEA-----ALFVPSGTQANQLALAAHCQPGE 75 (342)
T ss_pred CCHHHHHHHHhcccc-------CCCCCCCCHHHHHHH----HHHHHHhCCce-----EEEecCccHHHHHHHHHhcCCCC
Confidence 588999999775421 122356666666666 77888888732 35666677799999999999999
Q ss_pred eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc------CCcEEEEcCCC-CCCcc
Q 023191 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF------RPKLIVAGASA-YARLY 210 (286)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~------~tk~v~i~~~n-~g~~~ 210 (286)
.|++....|-.....+ +..+.+. ...+++ .+.+++.+++++|++.+... .+.+++++.++ .|++.
T Consensus 76 ~vi~~~~aHi~~~E~G------a~~~~~~-~~~~~~-~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy 147 (342)
T COG2008 76 SVICHETAHIYTDECG------APEFFGG-GQKLPI-VPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVY 147 (342)
T ss_pred eEEEeccccceecccC------cHHHHcC-Cceecc-CCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceec
Confidence 9999886665443322 2233332 122322 23367899999999987641 24556666444 67666
Q ss_pred C---HHHHHHHHHhcCCEEEEeccccccccc-cCCCCCCCC-cceEEEeCCCCCCCCCCceEEEEecchh
Q 023191 211 D---YERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPFE-YADVVTTTTHKSLRGPRGAMIFFRKGVK 275 (286)
Q Consensus 211 ~---l~~I~~ia~~~~~~vivD~a~~~g~~~-~~~~~~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~~~~ 275 (286)
| +++|.++||+|++.++.|+|..+.... .+.....+. ++|++.++++|.++.|.|.+++++.++.
T Consensus 148 ~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~ 217 (342)
T COG2008 148 PLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFA 217 (342)
T ss_pred CHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHH
Confidence 5 667788899999999999997655443 232222222 6999999999999999889999998755
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=132.23 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=125.0
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
+.++|+.+||+..+. .. .++| |. ....+ +++.+++++|++++ +|++|+|++ ++
T Consensus 17 ~~i~l~~Nenp~~~~------~~-~~~Y----p~-------~~~~~----lr~~ia~~~~~~~~----~I~it~Gs~~~l 70 (332)
T PRK06425 17 RIIDFSANINDFMDI------GD-ISIY----PE-------ISYTD----IEDQIKIYTQGLKI----KVLIGPGLTHFI 70 (332)
T ss_pred CEEEeccccCCCcCh------hh-cccC----cC-------cCHHH----HHHHHHHHhCCCcc----eEEECCCHHHHH
Confidence 468999999987410 01 1223 22 12233 45888888999875 599999999 77
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CC
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~ 204 (286)
..++. +++||+ |++++ |.|..|...++..|.+++.+|+ + + ..+|.+.+++ .++|+|+++ |+
T Consensus 71 ~~~~~-~~~~~~-vv~~~--------P~y~~y~~~~~~~G~~v~~vp~--~-~-~~~~~~~l~~----~~~k~v~l~nP~ 132 (332)
T PRK06425 71 YRLLS-YINVGN-IIIVE--------PNFNEYKGYAFTHGIRISALPF--N-L-INNNPEILNN----YNFDLIFIVSPD 132 (332)
T ss_pred HHHHH-HhCCCc-EEEeC--------CChHHHHHHHHHcCCeEEEEeC--C-c-ccCcHHHHhh----cCCCEEEEeCCC
Confidence 75665 578874 66778 6776666677788877766664 3 1 3456554442 389999997 66
Q ss_pred C-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCC-CC-CC--cceEEEeCCCCCCC--CCCceEEEEecch
Q 023191 205 A-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SP-FE--YADVVTTTTHKSLR--GPRGAMIFFRKGV 274 (286)
Q Consensus 205 n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~-~~--~~D~v~~s~~K~l~--gp~gG~l~~~~~~ 274 (286)
| +|...+ +++|+++|+++++++|+|+++. .....+... .. .. ..-+++.|++|.++ |.|-|++++++++
T Consensus 133 NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~-~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~l 211 (332)
T PRK06425 133 NPLGNLISRDSLLTISEICRKKGALLFIDEAFI-DFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYN 211 (332)
T ss_pred CCcCCccCHHHHHHHHHHHHHcCCEEEEecchh-ccccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHH
Confidence 6 776655 6677888899999999999954 222211100 00 01 12377899999774 5556999999887
Q ss_pred hhhhcc
Q 023191 275 KEINKQ 280 (286)
Q Consensus 275 ~~~~~~ 280 (286)
.+..++
T Consensus 212 i~~l~~ 217 (332)
T PRK06425 212 MKISRK 217 (332)
T ss_pred HHHHHH
Confidence 766553
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=134.24 Aligned_cols=165 Identities=22% Similarity=0.247 Sum_probs=113.5
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....+| +.++.+.|.+. .+++.||+.|+.+++.+++++||+|++++..|++...-. .......|
T Consensus 53 gnPt~~~le----~~la~Le~g~~-----a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~----~~~l~~~g 119 (386)
T PF01053_consen 53 GNPTVRALE----QRLAALEGGED-----ALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLL----EELLPRFG 119 (386)
T ss_dssp C-HHHHHHH----HHHHHHHT-SE-----EEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHH----HHCHHHTT
T ss_pred ccccHHHHH----HHHHHhhcccc-----eeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhh----hhhhcccC
Confidence 345556666 66777777753 477888888887799999999999999997666543211 11112234
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcC-CEEEEeccccccccccCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQK-AIMLADMAHISGLVAAGVI 242 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~-~~vivD~a~~~g~~~~~~~ 242 (286)
.++..+ +. -|++++++++++ +|++|++. |+| +..+.|+++|+++|+++| +++++|.+.+.+. .
T Consensus 120 v~v~~~--d~------~d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~-----~ 185 (386)
T PF01053_consen 120 VEVTFV--DP------TDLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPY-----N 185 (386)
T ss_dssp SEEEEE--ST------TSHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTT-----T
T ss_pred cEEEEe--Cc------hhHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccccee-----e
Confidence 333222 22 389999999998 99999997 777 457889999999999998 9999999965442 2
Q ss_pred CCCCC-cceEEEeCCCCCCCCCC---ceEEEEec--chhhh
Q 023191 243 PSPFE-YADVVTTTTHKSLRGPR---GAMIFFRK--GVKEI 277 (286)
Q Consensus 243 ~~~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~--~~~~~ 277 (286)
..++. |+|+++.|.+|+++|.. +|+++++. ++.+.
T Consensus 186 ~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~ 226 (386)
T PF01053_consen 186 QNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDR 226 (386)
T ss_dssp C-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHH
T ss_pred eccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhh
Confidence 23455 59999999999998876 48888776 44443
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-15 Score=133.48 Aligned_cols=158 Identities=17% Similarity=0.196 Sum_probs=109.4
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++...+|| +.++++.|.+. .+.+.||+.|+.+++.+++++||+|+++...|+..+... ...+...|
T Consensus 62 ~~P~~~~lE----~~la~leg~~~-----av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~----~~~~~~~G 128 (384)
T PRK06434 62 GNPTVQAFE----EKYAVLENAEH-----ALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFF----NKVLKTLG 128 (384)
T ss_pred CChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHH----HHHHHhcC
Confidence 445667777 67778888765 488888988887788999999999999876555544211 12233455
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~ 243 (286)
..+..+ +.++. ..++ +++.++|+|++. ++| ++...|+++|+++|++++ +++|++++.+.. .
T Consensus 129 i~v~fv--d~~~~-~~~~-------l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~-----~ 191 (384)
T PRK06434 129 IHVDYI--DTDRL-NSLD-------FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYN-----Q 191 (384)
T ss_pred cEEEEE--CCCCh-hhee-------ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCccc-----C
Confidence 544444 33311 1121 223378999997 776 568899999999999998 467999754432 2
Q ss_pred CCCC-cceEEEeCCCCCCCCCC---ceEEEEecc
Q 023191 244 SPFE-YADVVTTTTHKSLRGPR---GAMIFFRKG 273 (286)
Q Consensus 244 ~~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~ 273 (286)
.++. ++|++++|+||+++|+. ||+++++++
T Consensus 192 ~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~ 225 (384)
T PRK06434 192 NPLDLGADVVIHSATKYISGHSDVVMGVAGTNNK 225 (384)
T ss_pred CchhcCCCEEEeecccccCCCCCceEEEEecCcH
Confidence 2333 69999999999999866 588877653
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=130.28 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=112.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccc
Q 023191 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISA 163 (286)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (286)
|++.+...+|| +.+++++|.+. -|.+.+|+.++.+++...++|||+| +...|-. .... .+..
T Consensus 74 Yagd~s~~~LE----~~vAe~lG~e~-----aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~---Tt~a----hI~~ 135 (460)
T PRK13237 74 YAGSRNFYHLE----ETVQEYYGFKH-----VVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFT---TTRY----HQEL 135 (460)
T ss_pred hcCCCcHHHHH----HHHHHHHCCCe-----EEEeCCHHHHHHHHHHhCCCCcCEE--CCccchH---hhHH----HHHh
Confidence 45666777888 67777889876 3666677776664555558999975 3321111 1110 1233
Q ss_pred ceeeeEEEec-------ccCCCCCCCCHHHHHHHhhhc---CCcEEEEc-CCC-C-CCc---cCHHHHHHHHHhcCCEEE
Q 023191 164 VSIFFETMPY-------RLNESTGYIDYDQLEKSATLF---RPKLIVAG-ASA-Y-ARL---YDYERIRKVCNKQKAIML 227 (286)
Q Consensus 164 ~g~~~~~v~~-------~~~~~~~~~d~e~l~~~i~~~---~tk~v~i~-~~n-~-g~~---~~l~~I~~ia~~~~~~vi 227 (286)
.|..+.-+.. ..++.++.+|+++|+++|++. ++++|.+. +.| . |.. .++++|.++|++||+.||
T Consensus 136 ~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi 215 (460)
T PRK13237 136 NGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVF 215 (460)
T ss_pred CCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEE
Confidence 4432211110 112356899999999999762 23344443 555 4 333 468999999999999999
Q ss_pred Eeccccccccc------cCCCCCC--------CCcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 228 ADMAHISGLVA------AGVIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 228 vD~a~~~g~~~------~~~~~~~--------~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
.|+||.+|... .+....+ +.++|.+++|+||.+.++.||+++++++
T Consensus 216 ~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D~ 275 (460)
T PRK13237 216 FDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMNDE 275 (460)
T ss_pred EECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECCH
Confidence 99999988331 1111122 2369999999999999999999999985
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=123.42 Aligned_cols=211 Identities=17% Similarity=0.146 Sum_probs=141.1
Q ss_pred cCceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHH
Q 023191 47 KGLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSN 125 (286)
Q Consensus 47 ~~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~ 125 (286)
++|-|..+.- ..|..+.....+...+.|.++...+++.+... .-.+-+.+-.+++.+.|....+ ++++.+++++
T Consensus 31 ~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~-W~~lp~~lgdklApLiGA~~~E----vvv~dtts~n 105 (407)
T COG3844 31 GVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKAD-WFDLPERLGDKLAPLIGARAGE----VVVTDTTSIN 105 (407)
T ss_pred CeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCc-hhhchhHHHHHhhhhhcCCCCc----eEEeCCcchH
Confidence 4455554333 34544444444444333433333333322222 3345556779999999997754 8888888844
Q ss_pred HH-HHHHh--cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 126 FQ-VYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 126 ~~-~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
+. ++.+. ..+|++|++++- .++.+-.| .....+.+.+... + -...+.++++++.+++ ++.+|+++
T Consensus 106 l~k~L~aalr~~~~r~vIv~E~--~~fpTdly-~a~g~~~~~~~~~-----~---~~~~~~P~~~~~~~~d-d~AvV~L~ 173 (407)
T COG3844 106 LFKVLAAALRPQEGRRVIVSEG--DNFPTDLY-IAEGLADLLGIGY-----D---LEGVIAPRALEEAITD-DVAVVLLS 173 (407)
T ss_pred HHHHHHHHhccCCCceEEeecC--CCCCcchh-hhcchhhhhcccc-----c---ceeeeChHHHHHhhcc-ceEEEEec
Confidence 32 55555 456899998762 22221222 2222233443211 1 1246678899999988 89999988
Q ss_pred CCC--CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCC-CCc-eEEEEecchhhh
Q 023191 203 ASA--YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRG-PRG-AMIFFRKGVKEI 277 (286)
Q Consensus 203 ~~n--~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~g-p~g-G~l~~~~~~~~~ 277 (286)
..| +|...++.+|.++||+|+++++.|-||++|.++.+++..+ +|+.++++||.++| |.+ +++++.++..+.
T Consensus 174 ~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~g---aDfaigcsyKYLNgGPGapa~l~v~~~h~e~ 249 (407)
T COG3844 174 HVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAG---ADFAIGCSYKYLNGGPGAPAGLFVAPRHRER 249 (407)
T ss_pred cccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccC---CCeeeeeeceeccCCCCCceeEEeccccccc
Confidence 666 7899999999999999999999999999999999998887 99999999999955 555 999998765543
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=126.65 Aligned_cols=175 Identities=15% Similarity=0.125 Sum_probs=132.0
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH---HHHHHHHHh-cC----CCCeEEeccCCCCcccCccccccc
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP---SNFQVYTAL-LK----PHDRIMALDLPHGGHLSHGYQTDT 158 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~---a~~~~l~a~-~~----~Gd~Vl~~~~~~~~~~~~~~~~~~ 158 (286)
.++..++-..+.+|++++.|.|. +.++..+|+. +-++++++. -. ..+.+|+++..|+.+..
T Consensus 104 vqG~l~li~~Lq~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA------- 172 (496)
T COG1003 104 VQGYLELIYELQEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA------- 172 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh-------
Confidence 35667777788899999999987 5688889988 333366666 22 34689999999999854
Q ss_pred cccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CC-CccCHHHHHHHHHhcCCEEEEeccccccc
Q 023191 159 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YA-RLYDYERIRKVCNKQKAIMLADMAHISGL 236 (286)
Q Consensus 159 ~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g-~~~~l~~I~~ia~~~~~~vivD~a~~~g~ 236 (286)
.+.+.|-+++++ +.+ +++.+|+++|++++.+ ++.++.++++| .| ...++.+|+++.|++|..|..|+|..-..
T Consensus 173 -SAam~G~~VV~V--~~~-~~G~VDlddLk~k~~~-~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~ 247 (496)
T COG1003 173 -SAAMAGFKVVVV--KCD-ENGNVDLDDLRAKAED-NLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAI 247 (496)
T ss_pred -hHhhcCceEEEE--ecC-CCCCccHHHHHHHhcc-ceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhh
Confidence 455778555555 455 6799999999999997 99999998666 56 55679999999999999999999965444
Q ss_pred cccCCCCCCCCcceEEEeCCCCCCCCCCc------eEEEEecchhhhhc
Q 023191 237 VAAGVIPSPFEYADVVTTTTHKSLRGPRG------AMIFFRKGVKEINK 279 (286)
Q Consensus 237 ~~~~~~~~~~~~~D~v~~s~~K~l~gp~g------G~l~~~~~~~~~~~ 279 (286)
+. +...+--|+|++-.++||+|+.|.| |-+.++..+.+.+-
T Consensus 248 vG--~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP 294 (496)
T COG1003 248 VG--LARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLP 294 (496)
T ss_pred hc--cccccccccceEEeecccccccCCCCCCCCCCceehHhhccccCC
Confidence 33 2222222699999999999955433 56787877766553
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-14 Score=129.76 Aligned_cols=176 Identities=16% Similarity=0.114 Sum_probs=112.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHCC-CCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccc
Q 023191 84 YGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKI 161 (286)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~g-~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~ 161 (286)
|+...+..+|++++.+++.+..+ .+++++ .+|++|+|++ ++..++.++++|||+|++++| .|+.|...+
T Consensus 40 Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~-~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P--------~y~~~~~~~ 110 (388)
T PRK08637 40 YAPPQGIPELRDLWQEKMLRENPSLSGKKM-SLPIVTNALTHGLSLVADLFVDQGDTVLLPDH--------NWGNYKLTF 110 (388)
T ss_pred CCCCCCCHHHHHHHHHHHhccCcccccccc-ceeeEccchHHHHHHHHHHhcCCCCEEEEcCC--------CCccHHHHH
Confidence 45557788899888887766543 233210 2589999999 887788999999999999994 444444332
Q ss_pred -ccceeeeEEEecccCCCCCCCCHHHHHHHhh---hcCCcEEEEc-CCC-CCCccC---HHHHHHHHHh-----cCCEEE
Q 023191 162 -SAVSIFFETMPYRLNESTGYIDYDQLEKSAT---LFRPKLIVAG-ASA-YARLYD---YERIRKVCNK-----QKAIML 227 (286)
Q Consensus 162 -~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~---~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~-----~~~~vi 227 (286)
...|.+++.+| +..+++.+|++++++.++ +..+++++++ |+| +|...+ +++|+++|++ |+++||
T Consensus 111 ~~~~g~~vv~v~--~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI 188 (388)
T PRK08637 111 NTRRGAEIVTYP--IFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAV 188 (388)
T ss_pred HHhcCCEEEEec--ccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 24566665555 422345789999999886 2134456666 677 775544 6677777765 899999
Q ss_pred EeccccccccccC-CCCC---CC-C---cce-EEEeCCCCCC--CCCCceEEEEe
Q 023191 228 ADMAHISGLVAAG-VIPS---PF-E---YAD-VVTTTTHKSL--RGPRGAMIFFR 271 (286)
Q Consensus 228 vD~a~~~g~~~~~-~~~~---~~-~---~~D-~v~~s~~K~l--~gp~gG~l~~~ 271 (286)
+|+++. .....+ ..+. .+ . .+. +.+.|++|.+ .|.|.|++++.
T Consensus 189 ~De~Y~-~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 189 VDDAYF-GLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG 242 (388)
T ss_pred ecccch-hcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence 999954 222211 1110 00 1 111 2245999965 45555999864
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=138.54 Aligned_cols=166 Identities=22% Similarity=0.170 Sum_probs=122.2
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
+..+..++.||++. ..++++|+| +|.+++++++.+||.||+.+.+|.|...- .+.+.|+.++.+.-.
T Consensus 178 eAq~~AA~~fgAd~-----tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hg-------aLiLsGa~PVYl~P~ 245 (720)
T PRK13578 178 DAQKHAAKVFNADK-----TYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHG-------ALIQAGATPVYLETA 245 (720)
T ss_pred HHHHHHHHHhCCCc-----eEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH-------HHHHcCCeEEEeecc
Confidence 35588999999986 488889999 99999999999999999999999887641 134667666554422
Q ss_pred cCCCC--CCCCH-----HHHHHHhhhc--------C-CcEEEEcCCC-CCCccCHHHHHHH-HHhcCCEEEEeccccccc
Q 023191 175 LNEST--GYIDY-----DQLEKSATLF--------R-PKLIVAGASA-YARLYDYERIRKV-CNKQKAIMLADMAHISGL 236 (286)
Q Consensus 175 ~~~~~--~~~d~-----e~l~~~i~~~--------~-tk~v~i~~~n-~g~~~~l~~I~~i-a~~~~~~vivD~a~~~g~ 236 (286)
.+.-+ +.++. +.|++++.++ + .|+++++.++ .|.+.++++|+++ ++.++ ++++|+||++..
T Consensus 246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~ 324 (720)
T PRK13578 246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYE 324 (720)
T ss_pred ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhh
Confidence 22111 23454 4588888763 1 4888888666 7899999999998 68888 999999988655
Q ss_pred cccC----CCCCCCC-cce----EEEeCCCCCCCCCCc-eEEEEecch
Q 023191 237 VAAG----VIPSPFE-YAD----VVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 237 ~~~~----~~~~~~~-~~D----~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
.... +.+..+. ++| +++-|+||++++-.. ++|-.+++.
T Consensus 325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~ 372 (720)
T PRK13578 325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNH 372 (720)
T ss_pred ccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcc
Confidence 4333 2222233 688 999999999988655 888887654
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-14 Score=123.70 Aligned_cols=204 Identities=13% Similarity=0.091 Sum_probs=127.8
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHH
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a 131 (286)
-|.+..++++++++...+....+.-+ +.........+. .+.+.....+|... +.+++..+ +.++++.+
T Consensus 34 lG~s~~~~e~iea~~~~~~~~v~Le~----~l~~g~~~~R~~-~~~~~~~~~~~aea------~~ivnnn~aAVll~~~a 102 (395)
T COG1921 34 LGRSLYSPEAIEAMKEAMRAPVELET----DLKTGKRGARLT-ELAELLCGLTGAEA------AAIVNNNAAAVLLTLNA 102 (395)
T ss_pred CCCccCCHHHHHHHHHHhcccceeee----ecccchhhHHHH-HHHHHHhcccchhh------eeeECCcHHHHHHHHhh
Confidence 36667899999999887755221100 011111122222 23344444444332 55555555 77756666
Q ss_pred hcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE-cCCCCC--C
Q 023191 132 LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASAYA--R 208 (286)
Q Consensus 132 ~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i-~~~n~g--~ 208 (286)
+.. +.+|++...+-.. .+.+.....+...|.+++.+ . .....+..+++.+|.+ +|++++= ..+|++ .
T Consensus 103 l~~-~~EvVis~g~lV~---gg~~~v~d~~~~aG~~l~Ev--G---~tn~t~~~d~~~AIne-~ta~llkV~s~~~~f~~ 172 (395)
T COG1921 103 LAE-GKEVVVSRGELVE---GGAFRVPDIIRLAGAKLVEV--G---TTNRTHLKDYELAINE-NTALLLKVHSSNYGFTG 172 (395)
T ss_pred hcc-CCeEEEEcccccc---CCCCChhHHHHHcCCEEEEe--c---ccCcCCHHHHHHHhcc-CCeeEEEEeeccccccc
Confidence 655 5566655422111 11222233566788766555 2 2346788999999998 8877653 477766 4
Q ss_pred ccCHHHHHHHHHhcCCEEEEeccccccccc---cCCCCCCCCcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 209 LYDYERIRKVCNKQKAIMLADMAHISGLVA---AGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 209 ~~~l~~I~~ia~~~~~~vivD~a~~~g~~~---~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
..+.++++++||++++++++|.+. |... .++....-.|+|+|++|++|.|+||++|++++|+++.+-++
T Consensus 173 ~l~~~~l~~ia~~~~lpvivD~aS--g~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq 244 (395)
T COG1921 173 MLSEEELVEIAHEKGLPVIVDLAS--GALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQ 244 (395)
T ss_pred cccHHHHHHHHHHcCCCEEEecCC--ccccccccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHHHHH
Confidence 567889999999999999999983 3321 12222222379999999999999999999999999987665
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=125.26 Aligned_cols=176 Identities=20% Similarity=0.274 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEecc-CCCCcccCccc-cc-cccccccce
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD-LPHGGHLSHGY-QT-DTKKISAVS 165 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~-~~~~~~~~~~~-~~-~~~~~~~~g 165 (286)
+.+.|+ +.+++.||.+..- +...+.||+.|+..++.++++|||+.+... ..|.......- .- ..-...-.|
T Consensus 55 GRd~le----~iyA~vfgaE~AL--VRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~G 128 (403)
T PF06838_consen 55 GRDKLE----RIYADVFGAEDAL--VRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFG 128 (403)
T ss_dssp HHHHHH----HHHHHHCT-SEEE--EETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT
T ss_pred cHHHHH----HHHHHHhCchhhh--hcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhC
Confidence 455555 8899999997643 455678999988889999999999999653 33332211100 00 011133456
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CC-----CccCHHHHHHHHHhc--CCEEEEecccccccc
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YA-----RLYDYERIRKVCNKQ--KAIMLADMAHISGLV 237 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g-----~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~ 237 (286)
..++.+++. +++.+|++.+++.+++ +||+|+|.-|- +. .+.+++++.+++|+. +++++||.++ |.+
T Consensus 129 i~Y~~v~L~---~dg~~D~~~i~~~~~~-~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCY--GEF 202 (403)
T PF06838_consen 129 IKYREVPLT---EDGTIDWEAIKKALKP-NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCY--GEF 202 (403)
T ss_dssp -EEEE--B----TTSSB-HHHHHHHHHT-TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TT--TTT
T ss_pred ceeEEEeec---CCCCcCHHHHHHhhcc-CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCc--cee
Confidence 667777643 5689999999999997 99999995222 22 445566666777664 7899999984 434
Q ss_pred ccCCCCCCCCcceEEEeCCCCCCCC---CCceEEEEecchhhh
Q 023191 238 AAGVIPSPFEYADVVTTTTHKSLRG---PRGAMIFFRKGVKEI 277 (286)
Q Consensus 238 ~~~~~~~~~~~~D~v~~s~~K~l~g---p~gG~l~~~~~~~~~ 277 (286)
.....|.. -|+|++.+|+-|..+| |.||++++|+++.+.
T Consensus 203 vE~~EP~~-vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~ 244 (403)
T PF06838_consen 203 VETQEPTE-VGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVER 244 (403)
T ss_dssp TSSS-GGG-GT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHH
T ss_pred ccccCccc-cchhheeccceeCCCCCccCcCCEEechHHHHHH
Confidence 33333221 2799999999999866 788999999988753
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=129.01 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=102.6
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
+++.+++++|++..+ +|++|+|++ ++. ++..++++|| |++++ |+|+.|...+...|.+++.+ +.
T Consensus 58 L~~~ia~~~~~~~~~---~I~i~~Gs~e~i~-~l~~~~~~g~-v~v~~--------P~y~~y~~~~~~~g~~~~~v--~~ 122 (339)
T PRK06959 58 LAACAARYYGAPDAA---HVLPVAGSQAAIR-ALPALLPRGR-VGIAP--------LAYSEYAPAFARHGHRVVPL--DE 122 (339)
T ss_pred HHHHHHHHhCCCCcc---cEEECcCHHHHHH-HHHHhcCCCe-EEEcC--------CCcHHHHHHHHHCCCEEEee--cc
Confidence 558899999996422 599999999 766 4455678887 88888 66666665667777665444 33
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHH---HHhcCCEEEEeccccccccccCCCCCCCCc-c
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKV---CNKQKAIMLADMAHISGLVAAGVIPSPFEY-A 249 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~i---a~~~~~~vivD~a~~~g~~~~~~~~~~~~~-~ 249 (286)
+ + +. +.+ ++++++++ |+| +|...+.+++.++ |++++.++|+|+++..-......... ... .
T Consensus 123 ~-~------~~----~~~-~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~-~~~~~ 189 (339)
T PRK06959 123 A-A------DT----LPA-ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAH-TDRPG 189 (339)
T ss_pred c-c------hh----ccc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhc-cCCCC
Confidence 3 1 22 222 56778887 766 7777776655554 56789999999996532111111100 011 1
Q ss_pred eEEEeCCCCCCC--CCCceEEEEecchhhhhcc
Q 023191 250 DVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 250 D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~~ 280 (286)
-+++.|++|.|+ |.|-|+++++.++.+..++
T Consensus 190 vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~ 222 (339)
T PRK06959 190 LVVLRSVGKFFGLAGVRAGFVLAAPALLAALRD 222 (339)
T ss_pred EEEEecChhhcCCcchheEEEecCHHHHHHHHH
Confidence 277999999774 5556999999888776654
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=129.18 Aligned_cols=197 Identities=10% Similarity=0.000 Sum_probs=125.4
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC-hH-HHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SP-SNF 126 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG-~~-a~~ 126 (286)
..+++|....++.+++++........ +.+. -.....++-+.+++.+++++|++.+. +|++++| ++ ++.
T Consensus 5 ~~f~pGP~~~~~~v~~a~~~~~~~~~---~~~h----r~~~f~~~~~~~r~~l~~l~~~~~~~---~v~f~~gs~T~a~~ 74 (361)
T TIGR01366 5 GRFGSGPSKVRLEQLQALTTTAASLF---GTSH----RQAPVKNLVGRVREGLAELFSLPDGY---EVILGNGGATAFWD 74 (361)
T ss_pred CcccCCCcCCCHHHHHHHHhcCcccc---ccCc----CChHHHHHHHHHHHHHHHHhCCCCCc---eEEEECCchhHHHH
Confidence 45778888889999999874311100 0000 01234566677889999999985432 5777544 55 777
Q ss_pred HHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC
Q 023191 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (286)
Q Consensus 127 ~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n 205 (286)
+++.+++.+ +..++...+|.+.+....... ...+ +++.++.+ .+..++. .+.+ ++|+|.++ .+|
T Consensus 75 ~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~----~~~~-~~~~~~~~---~~~~~~~-----~~~~-~~~lV~~~h~et 139 (361)
T TIGR01366 75 AATFGLIEK-KSLHLSFGEFSSKFAKAVKLA----PWLG-EPIIVTAD---PGSAPEP-----QADP-GVDVIAWAHNET 139 (361)
T ss_pred HHHHhcccc-cccEEecCHHHHHHHHHHHhh----hccC-CceEEecC---CCCCCCC-----ccCC-CCCEEEEcccCC
Confidence 688888743 233333333332221111000 0011 23444432 2233333 2444 89999887 555
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
+|...|+++| ++++|+++++|++|++|..+.++.. +|++++|+||+|++|.| ++++.++++.+..
T Consensus 140 ~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~-----~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~ 206 (361)
T TIGR01366 140 STGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE-----TDVYYFAPQKNFASDGGLWLAIMSPAALERI 206 (361)
T ss_pred ccceecccccc---cccCCCeEEEEcCccccCCCCCHHH-----CCEEEEEchhhcCCCCceEEEEECHHHHhhh
Confidence 8899999887 5899999999999999998877652 89999999999988877 7778888755433
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-14 Score=124.70 Aligned_cols=165 Identities=21% Similarity=0.188 Sum_probs=117.6
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
++....|| +.++.+-|.+. .+.+.||..|+..++.+++++||+|++++..|++.+.-.- ....-.|.
T Consensus 62 nPT~~~lE----~~~a~LEg~~~-----~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~----~~l~~~gi 128 (396)
T COG0626 62 NPTRDALE----EALAELEGGED-----AFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFE----KILQKFGV 128 (396)
T ss_pred CccHHHHH----HHHHHhhCCCc-----EEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHH----HHHHhcCe
Confidence 45566666 66777767654 5899999998887899999999999999976666543221 11222443
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
++..+ + .-|.+++++++.+++||+|++. |+| +..+.|+++|+++|+++|+++++|++.+.+. ...
T Consensus 129 ~~~~~--d------~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~-----~q~ 195 (396)
T COG0626 129 EVTFV--D------PGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPV-----LQR 195 (396)
T ss_pred EEEEE--C------CCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccc-----ccC
Confidence 33222 2 1245566666663489999997 777 4488999999999999999999999965543 334
Q ss_pred CCC-cceEEEeCCCCCCCCCCc---eEEEEecc-hhhh
Q 023191 245 PFE-YADVVTTTTHKSLRGPRG---AMIFFRKG-VKEI 277 (286)
Q Consensus 245 ~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~-~~~~ 277 (286)
|++ |+|+++.|.+|.++|... |++.++++ +.+.
T Consensus 196 PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~ 233 (396)
T COG0626 196 PLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYEL 233 (396)
T ss_pred hhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHH
Confidence 555 699999999999988644 76665554 4343
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=119.96 Aligned_cols=196 Identities=19% Similarity=0.247 Sum_probs=138.6
Q ss_pred CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhc-CC
Q 023191 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL-KP 135 (286)
Q Consensus 57 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~-~~ 135 (286)
.|..+++++|.++... ..-|+......+|| ++.++++|-+. .++++||+.+|+++++.-+ .+
T Consensus 33 ~PTdeMr~am~eA~vg--------DdVyGeD~tt~rLE----~~vA~l~GKEA-----gLFv~SGTmgNllaIm~Hc~~r 95 (384)
T KOG1368|consen 33 VPTDEMRRAMAEASVG--------DDVYGEDPTTNRLE----QRVAELFGKEA-----GLFVPSGTMGNLLAIMVHCHQR 95 (384)
T ss_pred CChHHHHHHHhhcccC--------cccccCCccHHHHH----HHHHHHhCccc-----eeeecccccccHHHHHHHhcCC
Confidence 3678999999886643 12245556667777 77888899776 5899999998877777665 59
Q ss_pred CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcC-------CcEEEEc-CCC-C
Q 023191 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR-------PKLIVAG-ASA-Y 206 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~-------tk~v~i~-~~n-~ 206 (286)
|.+|++-+..|--.+..+- ...+.|..+ .++. +.+++.+|+++|++.+..++ |++|.+. .+| .
T Consensus 96 g~eii~gd~~HI~~~E~gg-----~s~l~gv~~--~tv~-~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~ 167 (384)
T KOG1368|consen 96 GSEIIVGDRAHIHRYEQGG-----ISQLAGVHV--RTVK-NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNC 167 (384)
T ss_pred CceEEeccchheeehhccC-----hhhhcccee--Eeee-eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeecccccc
Confidence 9999988765543332221 134555433 4433 33678999999999997433 7899995 444 4
Q ss_pred C-CccCHH---HHHHHHHhcCCEEEEecccccccc-ccCCCCCCC-CcceEEEeCCCCCCCCCCceEEEEecchhhh
Q 023191 207 A-RLYDYE---RIRKVCNKQKAIMLADMAHISGLV-AAGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 207 g-~~~~l~---~I~~ia~~~~~~vivD~a~~~g~~-~~~~~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~ 277 (286)
| .+.|++ +|.++|++||+.++.|+|..+..- ..+.....+ ..+|.+..+++|.+++|-|.++.+++++.+-
T Consensus 168 Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~k 244 (384)
T KOG1368|consen 168 GGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDK 244 (384)
T ss_pred CceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHH
Confidence 5 666655 678889999999999999765432 223222111 2489999999999999999999999987653
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-13 Score=125.75 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=115.2
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh--cC--C-----C-------------------
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK--P-----H------------------- 136 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~--~~--~-----G------------------- 136 (286)
.++....+|+++.+++++++|.+. .| =.+|+|+| +|+.++.+- .. | +
T Consensus 117 ~SP~~t~lE~~vi~~la~l~G~~~-~~---G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~ 192 (608)
T TIGR03811 117 SSPATSQMEEEVGKEFATLMGYKN-GW---GHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTK 192 (608)
T ss_pred cCchHHHHHHHHHHHHHHHhCCCC-CC---eEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccc
Confidence 345678999999999999999975 33 33667777 777544322 10 0 0
Q ss_pred ------------------------C------eEEeccCCCCcccCccccccccccccceee---eEEEecccCCCCCCCC
Q 023191 137 ------------------------D------RIMALDLPHGGHLSHGYQTDTKKISAVSIF---FETMPYRLNESTGYID 183 (286)
Q Consensus 137 ------------------------d------~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~d 183 (286)
. .++++...|.++. +.+.+.|.. ++.+| ++ +++++|
T Consensus 193 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~--------KAa~ilGlG~~~vv~Vp--vD-~~~rmd 261 (608)
T TIGR03811 193 EIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWL--------KAADIIGIGLDQVIPVP--VD-SNYRMD 261 (608)
T ss_pred cccccccccccchhhhhhhccccccccccceEEEECCCccHHHH--------HHHHHcCCCcccEEEee--cC-CCCcCC
Confidence 0 3444443344332 245566653 45555 55 678999
Q ss_pred HHHHHHHhhhc---C-C-cEEEEc--CCCCCCccCHHHHHHHH---HhcCC--EEEEeccccccc--cccC----CC---
Q 023191 184 YDQLEKSATLF---R-P-KLIVAG--ASAYARLYDYERIRKVC---NKQKA--IMLADMAHISGL--VAAG----VI--- 242 (286)
Q Consensus 184 ~e~l~~~i~~~---~-t-k~v~i~--~~n~g~~~~l~~I~~ia---~~~~~--~vivD~a~~~g~--~~~~----~~--- 242 (286)
+++|++.|.+. + + -+|+.+ .+++|.+.|+++|+++| +++|+ |++||+|++.-. ...+ ..
T Consensus 262 ~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~ 341 (608)
T TIGR03811 262 INELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYD 341 (608)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccc
Confidence 99999988641 2 2 234433 55588999999999999 67887 699999965422 1111 00
Q ss_pred --------------------C------CCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 243 --------------------P------SPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 243 --------------------~------~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
+ ..++.+|.++.++|||+..|.+ |++++|+.
T Consensus 342 ~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~ 399 (608)
T TIGR03811 342 DLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDI 399 (608)
T ss_pred hhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCH
Confidence 0 1245699999999999999999 99999875
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=121.17 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=116.2
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+..+.++ ..++.+.|... .+++.||.+|+..++..++++|++|+..+..|.+........ ....|+.
T Consensus 77 Pt~~~le----~~iaal~ga~~-----~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~----~~~~gie 143 (409)
T KOG0053|consen 77 PTRDVLE----SGIAALEGAAH-----ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKF----LPKFGGE 143 (409)
T ss_pred CchHHHH----HHHHHHhCCce-----EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHH----HHHhCce
Confidence 3445555 77888888875 488899998777799999999999999998887765422211 1123322
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
...+ +. -|++++++++.+ ++++|++. |+| +..+.|+++|+++||++|++|++|++-+.+ ....+
T Consensus 144 ~~~v--d~------~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p-----~~~~p 209 (409)
T KOG0053|consen 144 GDFV--DV------DDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP-----YNQDP 209 (409)
T ss_pred eeee--ch------hhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc-----cccCh
Confidence 2222 22 267888888988 99999997 777 558899999999999999999999994332 22334
Q ss_pred CC-cceEEEeCCCCCCCCCCc---eEEEEe
Q 023191 246 FE-YADVVTTTTHKSLRGPRG---AMIFFR 271 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~gp~g---G~l~~~ 271 (286)
+. |||+++.|.+|+|+|... |.+..|
T Consensus 210 L~lGADIV~hSaTKyi~Ghsdvi~G~iv~n 239 (409)
T KOG0053|consen 210 LPLGADIVVHSATKYIGGHSDVIGGSVVLN 239 (409)
T ss_pred hhcCCCEEEEeeeeeecCCcceeeeEEecC
Confidence 44 499999999999998654 777776
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-14 Score=118.02 Aligned_cols=205 Identities=20% Similarity=0.274 Sum_probs=149.1
Q ss_pred cCceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcccCCcchH-HHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI-DMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
+.+|+..++- .-.|+++++-.+++.. |..|..+.++--+++.+ ..|| ..++++.+-+. .|+.-++.
T Consensus 68 ~ilnFcaNnYLGLsshPeii~a~~~alee-yGaGlssvrfIcGtq~iHk~LE----~kiAqfh~rED-----~ilypscf 137 (417)
T KOG1359|consen 68 KILNFCANNYLGLSSHPEIINAGQKALEE-YGAGLSSVRFICGTQDIHKLLE----SKIAQFHGRED-----TILYPSCF 137 (417)
T ss_pred ceeeecccccccccCChHHHHHHHHHHHH-hCCCccceeEEecchHHHHHHH----HHHHHHhCCCc-----eEEecccc
Confidence 4456554332 1378999999888876 66666666654444433 3455 77888877653 58888888
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhh---hcCCcEE
Q 023191 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT---LFRPKLI 199 (286)
Q Consensus 123 ~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~---~~~tk~v 199 (286)
.||+.++.++++|.|.|+.....|.+... ++.+.. .-..+|+-+++..+. +++-|+|
T Consensus 138 dANag~feail~pedAvfSDeLNhASIId--------GirLck------------ry~h~dv~~l~~~l~~a~k~r~klv 197 (417)
T KOG1359|consen 138 DANAGAFEAILTPEDAVFSDELNHASIID--------GIRLCK------------RYRHVDVFDLEHCLISACKMRLKLV 197 (417)
T ss_pred ccchHHHHHhcChhhhhhccccccchhhh--------hhHHHh------------hhccchhHHHHHHHHHhhhheEEEE
Confidence 89999999999999999998888877754 222221 112456666665443 3355667
Q ss_pred EEc--CCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccC---CCC-CC-CCcceEEEeCCCCCCCCCCceEEEEec
Q 023191 200 VAG--ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG---VIP-SP-FEYADVVTTTTHKSLRGPRGAMIFFRK 272 (286)
Q Consensus 200 ~i~--~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~---~~~-~~-~~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (286)
+.. .+.-|...|+++|.+++++||.++++|++|+.|..... ... .. ...+|++..++.|.++|-.||+..+.+
T Consensus 198 ~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~ 277 (417)
T KOG1359|consen 198 VTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPK 277 (417)
T ss_pred EecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCCh
Confidence 664 77788999999999999999999999999998766431 111 11 124899999999999999999999999
Q ss_pred chhhhhccC
Q 023191 273 GVKEINKQG 281 (286)
Q Consensus 273 ~~~~~~~~~ 281 (286)
++.+.+++.
T Consensus 278 ~li~llrqr 286 (417)
T KOG1359|consen 278 PLISLLRQR 286 (417)
T ss_pred hHHHHHHhc
Confidence 999888854
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=115.75 Aligned_cols=185 Identities=12% Similarity=0.075 Sum_probs=127.4
Q ss_pred ccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCcccccccc
Q 023191 83 YYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 159 (286)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~ 159 (286)
.|...++...+++++.+.+.+.-|- ..++ .++++++|++ ++..++.++.+|||..+++.|-|+++-...
T Consensus 116 ~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP--~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl------ 187 (471)
T KOG0256|consen 116 MFQDYHGLPSFRQAVAEFMERARGNRVKFDP--ERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDL------ 187 (471)
T ss_pred hcccccCchHHHHHHHHHHHHHhCCCCccCc--cceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccc------
Confidence 4566678899999999988887664 2233 4699999999 998788888999999999997777663321
Q ss_pred ccccceeeeEEEecccCC-CCCCCCHHHHHHHhhh-----cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEE
Q 023191 160 KISAVSIFFETMPYRLNE-STGYIDYDQLEKSATL-----FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLA 228 (286)
Q Consensus 160 ~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~-----~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~viv 228 (286)
-...|. +.+|+.+.. ++++++.+.+|++..+ .+.|.|++. |+| .|... .+..+..+|.++++-||+
T Consensus 188 -~~rTgv--eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~ 264 (471)
T KOG0256|consen 188 -RWRTGV--EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVIS 264 (471)
T ss_pred -eeccCc--eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEe
Confidence 123343 445544443 5679999999988753 256778775 888 66444 477788889999999999
Q ss_pred eccccccccccCCCC-------CC--CCcceEEEeCCCCCCCCC--CceEEEEecc-hhhhh
Q 023191 229 DMAHISGLVAAGVIP-------SP--FEYADVVTTTTHKSLRGP--RGAMIFFRKG-VKEIN 278 (286)
Q Consensus 229 D~a~~~g~~~~~~~~-------~~--~~~~D~v~~s~~K~l~gp--~gG~l~~~~~-~~~~~ 278 (286)
|+.++.......-+. .+ ....--++.|++|-|+=| +-|+|+..++ +..+.
T Consensus 265 DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA 326 (471)
T KOG0256|consen 265 DEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAA 326 (471)
T ss_pred ehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHH
Confidence 999554333221110 11 011235789999977554 3499999775 44443
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-14 Score=124.64 Aligned_cols=205 Identities=15% Similarity=0.141 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHhccccccCCCCC-CCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEG-YPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL 132 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~ 132 (286)
|-.+.++++.+++.+...+ |.+- |--. .+..+.+ ...+.+.++.++|++. .+++.+.+.|.++++.++
T Consensus 14 GRs~l~~~a~~a~~~~a~~-Y~nLE~dl~---~G~Rg~R--~~~v~~ll~~ltgAea-----A~VvNnnaAAv~L~l~~l 82 (367)
T PF03841_consen 14 GRSPLSEEAIEAVAEVASG-YSNLEYDLE---TGKRGSR--YAHVEELLCELTGAEA-----ALVVNNNAAAVLLALNTL 82 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccc-ccccccccc---ccccccc--cccccccccccccccc-----cccccccccccccccccc
Confidence 5557899999999887655 3111 1111 1111110 0114467788888865 255555665777555555
Q ss_pred cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE-EcCCCC---C-
Q 023191 133 LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV-AGASAY---A- 207 (286)
Q Consensus 133 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~-i~~~n~---g- 207 (286)
. +|.+|++..-+-...-.. |. ........|...+.+ ... ..-.+++++++|++ +|.+++ +.+||+ |
T Consensus 83 a-~~~EvIvsRGelVeiGgs-FR-ip~vm~~sGa~lvEV--Gtt---N~t~~~Dye~AI~e-~Ta~ll~Vh~Sn~~i~GF 153 (367)
T PF03841_consen 83 A-KGKEVIVSRGELVEIGGS-FR-IPDVMRQSGARLVEV--GTT---NRTHLSDYEKAITE-NTAALLKVHTSNFRIQGF 153 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-cccccccccccccccccc-cc-ccccccccccccccc--ccc---cccccccccccccc-cccccccccccccccccc
Confidence 4 577888776332211111 00 112334556555444 322 34567888999998 897764 457884 3
Q ss_pred -CccCHHHHHHHHHhcCCEEEEecccccccc-c---cCC------CCCCCCcceEEEeCCCCCCCCCCceEEEEecchhh
Q 023191 208 -RLYDYERIRKVCNKQKAIMLADMAHISGLV-A---AGV------IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKE 276 (286)
Q Consensus 208 -~~~~l~~I~~ia~~~~~~vivD~a~~~g~~-~---~~~------~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~ 276 (286)
...++++++++|++|++++++|.+. |.. + .++ ...--.|+|+++||+.|.|+||+.|+|++++++.+
T Consensus 154 t~~~~~~el~~la~~~~lp~i~Dlgs--G~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~ 231 (367)
T PF03841_consen 154 TGEVSLEELAELAKEHGLPVIVDLGS--GLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKKELIE 231 (367)
T ss_dssp -------HHHHHHHHHT--EEEE-TT--HHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEHHHHH
T ss_pred cccccHHHHHHHHhhcCCcEEEECCC--CCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCHHHHH
Confidence 3558999999999999999999983 222 1 111 11111379999999999999999999999999998
Q ss_pred hhcc
Q 023191 277 INKQ 280 (286)
Q Consensus 277 ~~~~ 280 (286)
..|+
T Consensus 232 ~lk~ 235 (367)
T PF03841_consen 232 KLKK 235 (367)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7764
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=118.37 Aligned_cols=205 Identities=15% Similarity=0.095 Sum_probs=131.0
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChH-HH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSP-SN 125 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~-a~ 125 (286)
.++|++|...+|++|++++.+.+.+.-..|..--....-.+...++-+.+++.++++++++.+. .|++. .|++ ++
T Consensus 8 ~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y---~v~~l~Gsgt~~~ 84 (365)
T PLN02452 8 VFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNY---EVLFLQGGASTQF 84 (365)
T ss_pred eEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCc---eEEEEeCccHHHH
Confidence 5789999999999999999887654211121110001112345677778899999999985432 34443 4444 88
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccc--cccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT--KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA 203 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~ 203 (286)
.+++..++.+||++++.. .+....+ ..+...|...+............+|+++++. .+ +.+.|.++.
T Consensus 85 ea~~~nl~~~~~~~l~~~--------~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~h 153 (365)
T PLN02452 85 AAIPLNLCKPGDKADFVV--------TGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWEL--TP-DAKFVHICA 153 (365)
T ss_pred HHHHHhcCCCCCeEEEEE--------CCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcCC--CC-CCcEEEECC
Confidence 889999999999999887 3333222 1233344322222101110112567777532 22 567777753
Q ss_pred CC--CCC-ccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 204 SA--YAR-LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 204 ~n--~g~-~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
++ +|. ..+++++. ++++++|+++++|..+.++..+. + .++|.||.+ ||.| |++++|+++.+..
T Consensus 154 nETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~---v--~~~saqK~l-GP~Gl~~v~vr~~~l~~~ 220 (365)
T PLN02452 154 NETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYG---V--IYAGAQKNV-GPSGVTIVIIRKDLIGNA 220 (365)
T ss_pred CCCCCcEecCcccccC------CCeEEEECCccccCcccCHHHcC---E--EEEeccccc-CCCCeEEEEEcHHHHhhc
Confidence 33 666 36777664 38999999999999888776655 4 447999988 6999 9999998876443
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=128.56 Aligned_cols=189 Identities=11% Similarity=0.046 Sum_probs=128.2
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCC--cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGG--NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~-~ 133 (286)
+|+.+.+++.+...- | ..|. -|.. +++.-+.-.+.+..+++++|++.+ ++.++.+++ +..++++++ +
T Consensus 117 ~P~~v~~~i~~~~~~-~-Tayt---PYqaEisQG~lqal~~~Qt~ia~LtG~~~a----naSL~d~aTAaaea~~~a~~~ 187 (993)
T PLN02414 117 VPPVILRNILENPGW-Y-TQYT---PYQAEIAQGRLESLLNYQTMITDLTGLPMS----NASLLDEGTAAAEAMAMCNNI 187 (993)
T ss_pred CCHHHHHHHHhChHH-H-hhcC---CCchHHHHHHHHHHHHHHHHHHHHhCCChh----hEeecCChHHHHHHHHHHHhc
Confidence 678877777654321 1 0111 1222 244444555688999999999985 589989988 555466666 5
Q ss_pred CCC--CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCCCcc
Q 023191 134 KPH--DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLY 210 (286)
Q Consensus 134 ~~G--d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n~g~~~ 210 (286)
.+| |+|++++.+|+++..++.. -++..|.+++.++++ + .+ ...+ .+..+++. |+++|.+.
T Consensus 188 ~~g~~~~VlVs~~~hP~~~~v~~t----~a~~~GieV~~v~~~---~---~~------~~~~-~v~~vlvq~P~~~G~v~ 250 (993)
T PLN02414 188 LKGKKKKFLIASNCHPQTIDVCQT----RADGLGLEVVVADEK---D---FD------YSSG-DVCGVLVQYPATDGEVL 250 (993)
T ss_pred ccCCCCEEEEcCccCHhHHHHHHH----hhhhcCCEEEEecch---h---hc------cccC-ceEEEEEecCCCCeEEc
Confidence 654 7899999999888765432 123356556555432 1 01 1122 34455566 55689999
Q ss_pred CHHHHHHHHHhcCCEEEEeccccccccccC-CCCCCCCcceEEEeCCCCCC-----CCCCceEEEEecchhh
Q 023191 211 DYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSPFEYADVVTTTTHKSL-----RGPRGAMIFFRKGVKE 276 (286)
Q Consensus 211 ~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~~~~~~D~v~~s~~K~l-----~gp~gG~l~~~~~~~~ 276 (286)
|+++|+++||++|+++++ +++..+..... .... |+|++++++|||+ +||..|++++++++..
T Consensus 251 dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~---GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r 318 (993)
T PLN02414 251 DYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEW---GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR 318 (993)
T ss_pred CHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhc---cCcEEEECCCccccCCCCCCCCeeEEEECHHHHh
Confidence 999999999999999999 88877766543 2222 5999999999998 7777799999998755
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=112.67 Aligned_cols=197 Identities=15% Similarity=0.189 Sum_probs=137.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc-CC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL-KP 135 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~-~~ 135 (286)
.|..+++.....|..-. |..+ -|..++++.-+|+.+.+.+.+.=|.+.++ .+|..|+|++ ++..++..++ .+
T Consensus 87 fp~Dai~RA~~~L~~~g--Gs~G--aYS~SqGv~~vR~~VA~~I~rRDG~p~~p--~dI~LT~GAS~ai~~il~l~~~~~ 160 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCG--GSLG--AYSDSQGVPGVRKHVAEFIERRDGIPADP--EDIFLTTGASPAIRSILSLLIAGK 160 (475)
T ss_pred CCHHHHHHHHHHHHhcC--Cccc--ccccccCChhHHHHHHHHHHhccCCCCCH--HHeeecCCCcHHHHHHHHHHhcCC
Confidence 56666666666665422 2222 36777899999999999999998853333 4699999999 7775777664 57
Q ss_pred CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-CCCCCCHHHHHHHhhhc----CCcE-EEEcCCC-CC-
Q 023191 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLF----RPKL-IVAGASA-YA- 207 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~----~tk~-v~i~~~n-~g- 207 (286)
.+-|+++- |-|++|...+...|... +++-+++ .+|.+|.++|++.+++. ++++ ++|+|-| +|
T Consensus 161 ~~GvliPi--------PQYPLYsAti~l~~~~~--v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGq 230 (475)
T KOG0258|consen 161 KTGVLIPI--------PQYPLYSATISLLGGTQ--VPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQ 230 (475)
T ss_pred CCceEeec--------CCCchhHHHHHHhCCcc--cceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccch
Confidence 88899999 77888877777777654 4444554 47899999999987652 4665 4557888 77
Q ss_pred --CccCHHHHHHHHHhcCCEEEEeccccccccccC--CCC---------CCCC-cce-EEEeCCCCCC---CCCCceEEE
Q 023191 208 --RLYDYERIRKVCNKQKAIMLADMAHISGLVAAG--VIP---------SPFE-YAD-VVTTTTHKSL---RGPRGAMIF 269 (286)
Q Consensus 208 --~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~--~~~---------~~~~-~~D-~v~~s~~K~l---~gp~gG~l~ 269 (286)
+...+++|.++|.+.+++++.|+.+--.....+ ++. .+.. .+- +.+.|.||.+ +|++||++=
T Consensus 231 vls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmE 310 (475)
T KOG0258|consen 231 VLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYME 310 (475)
T ss_pred hhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeee
Confidence 345689999999999999999999554433322 100 1111 122 4467888876 778888864
Q ss_pred E
Q 023191 270 F 270 (286)
Q Consensus 270 ~ 270 (286)
.
T Consensus 311 v 311 (475)
T KOG0258|consen 311 S 311 (475)
T ss_pred c
Confidence 3
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=116.66 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=121.2
Q ss_pred CceecCCCCC---CCHHHHHHhccccccCCC-CCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 48 GLELIPSENF---TSVSVMQAVGSVMTNKYS-EGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 48 ~i~L~~~e~~---~~~~v~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+++...... .+|++++++.+.+.. +. .+...... ....+...++++.++++++. + .+++++|+.
T Consensus 48 ~ld~~s~~~lgl~~~p~v~~A~~~~l~~-~g~~~~~~~~~----~~~~~~~~~l~~~la~~~~~--~----~~~~~sG~~ 116 (402)
T PRK07505 48 FVNFVSCSYLGLDTHPAIIEGAVDALKR-TGSLHLSSSRT----RVRSQILKDLEEALSELFGA--S----VLTFTSCSA 116 (402)
T ss_pred EEEeecCCccCCCCCHHHHHHHHHHHHH-hCCCCCCccch----hhhhHHHHHHHHHHHHHhCC--C----EEEECChHH
Confidence 4666543222 389999999988864 31 11111111 11233445566888888887 2 388889988
Q ss_pred HHHHHHHHh----cCCCC-eEEecc-CCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCc
Q 023191 124 SNFQVYTAL----LKPHD-RIMALD-LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 197 (286)
Q Consensus 124 a~~~~l~a~----~~~Gd-~Vl~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk 197 (286)
++..++..+ ..+|+ .|++++ ..|++... .. .....+..++.+| . .|++++++++.+ +++
T Consensus 117 a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~-~~-----~~~~~~~~v~~~~--~------~d~~~l~~~~~~-~~~ 181 (402)
T PRK07505 117 AHLGILPLLASGHLTGGVPPHMVFDKNAHASLNI-LK-----GICADETEVETID--H------NDLDALEDICKT-NKT 181 (402)
T ss_pred HHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHh-hh-----hhhhcCCeEEEeC--C------CCHHHHHHHHhc-CCC
Confidence 776555432 23333 254544 44443211 01 1111122233332 2 389999998876 678
Q ss_pred EEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccc-cC--C--CCCC--CCcceEEEeCCCCCCCCCCceEE
Q 023191 198 LIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVA-AG--V--IPSP--FEYADVVTTTTHKSLRGPRGAMI 268 (286)
Q Consensus 198 ~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~-~~--~--~~~~--~~~~D~v~~s~~K~l~gp~gG~l 268 (286)
+++++ |.| +|...++++|.++|++|++++|+|++|+.+.+. .+ . .... .....+++.|+.|.++++ ||++
T Consensus 182 ~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-Gg~~ 260 (402)
T PRK07505 182 VAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-GGVI 260 (402)
T ss_pred EEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-CeEE
Confidence 88776 555 678889999999999999999999998653221 11 0 0111 112347788999998765 6887
Q ss_pred EE-ecchhhhhc
Q 023191 269 FF-RKGVKEINK 279 (286)
Q Consensus 269 ~~-~~~~~~~~~ 279 (286)
++ ++++.+..+
T Consensus 261 ~~~~~~~~~~~~ 272 (402)
T PRK07505 261 MLGDAEQIELIL 272 (402)
T ss_pred EeCCHHHHHHHH
Confidence 75 556665544
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-13 Score=115.14 Aligned_cols=194 Identities=20% Similarity=0.210 Sum_probs=138.8
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCc-chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh--cCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGN-EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKP 135 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~--~~~ 135 (286)
.|+|++||.+.+.. |..|..+.+.-.+. ....+|| ..++++.+-+. .++|+|-.-|+-..+.++ .=|
T Consensus 187 Hp~V~~A~~~tl~~-hG~GAGGTRNIsG~s~~hv~LE----~eLA~LHqK~a-----ALlFsSCfVANDstLftLak~lp 256 (570)
T KOG1360|consen 187 HPEVLDAMHDTLDR-HGAGAGGTRNISGHSKHHVRLE----AELADLHQKEA-----ALLFSSCFVANDSTLFTLAKKLP 256 (570)
T ss_pred ChHHHHHHHHHHHH-cCCCcCCccccCCCCchhhhHH----HHHHHHhcCcc-----eeeeeeeeeccchHHHHHHHHCC
Confidence 69999999999865 54455555554443 2234555 77888887665 377766555776666666 459
Q ss_pred CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc---CCcEEEEc--CCCCCCcc
Q 023191 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF---RPKLIVAG--ASAYARLY 210 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~---~tk~v~i~--~~n~g~~~ 210 (286)
|.+|......|.+.+. +++-.+.. +.++ + .-|+++|++++... .||+|.+. .+..|.+.
T Consensus 257 gcei~SD~gNHASMI~--------GIrns~v~-K~IF-r------HND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavc 320 (570)
T KOG1360|consen 257 GCEIFSDEGNHASMIQ--------GIRNSRVP-KHIF-R------HNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVC 320 (570)
T ss_pred CcEEeccccchHHHHH--------HhhhcCCc-ceee-c------cCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcC
Confidence 9999988877777643 22222211 1111 2 23888898888652 47899885 66689999
Q ss_pred CHHHHHHHHHhcCCEEEEecccccccccc---CC--CCCCCCcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 211 DYERIRKVCNKQKAIMLADMAHISGLVAA---GV--IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 211 ~l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~--~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
|+++|.++|++||++.++|+.|+.|.+.. ++ .+.-+..+|++.+++.|.| |.-||+|.....+.|..+
T Consensus 321 pleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKaf-GcVGGYIAat~~LvDmiR 393 (570)
T KOG1360|consen 321 PLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAF-GCVGGYIAATRKLVDMIR 393 (570)
T ss_pred CHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhc-ccccceehhhhhHHHHHH
Confidence 99999999999999999999999998753 22 2222235899999999988 568999999999988766
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-12 Score=117.90 Aligned_cols=217 Identities=12% Similarity=0.122 Sum_probs=129.5
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.|++..+.+ ..+|.+++++.+.+.... .++.. .+..++...+.+.++++++.+.+ .|++++|
T Consensus 37 ~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~------~~~~~~~~~l~~~l~~~~~~~~~----~v~~~~s 104 (413)
T cd00610 37 RYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLT--HFSLG------FFYNEPAVELAELLLALTPEGLD----KVFFVNS 104 (413)
T ss_pred EEEEcCccHHhhccCCCCHHHHHHHHHHHHhCc--CccCc------ccCCHHHHHHHHHHHHhCCCCCC----EEEEcCc
Confidence 4566655422 257899999988875311 11111 01224455567889999986554 4888777
Q ss_pred hH-HHHHHHHHh--cCCCCeEEeccCCCCcccCccccc-----cccccccceeeeEEEecccCC---CCCCCCHHHHHHH
Q 023191 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNE---STGYIDYDQLEKS 190 (286)
Q Consensus 122 ~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~---~~~~~d~e~l~~~ 190 (286)
++ ++.+++..+ ..++++|+++++.|.+........ +..........+..+|++... ..+..|++++++.
T Consensus 105 gsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 184 (413)
T cd00610 105 GTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEA 184 (413)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHH
Confidence 77 888777766 478999999997777653211110 000001111112233322000 1234589999998
Q ss_pred hhh--cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCC--CCCCCC-cceEEEeCCCCC
Q 023191 191 ATL--FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV--IPSPFE-YADVVTTTTHKS 259 (286)
Q Consensus 191 i~~--~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~--~~~~~~-~~D~v~~s~~K~ 259 (286)
+.+ .+++++++++.+ .|...+ +++|.++|++||+++|+|++|. |....+. ....+. ..|++ +++|+
T Consensus 185 l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-g~g~~g~~~~~~~~~~~~d~~--t~sK~ 261 (413)
T cd00610 185 LEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQT-GFGRTGKMFAFEHFGVEPDIV--TLGKG 261 (413)
T ss_pred HhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcchhhHhhcCCCCCeE--EEccc
Confidence 875 256777776443 455555 9999999999999999999986 3211110 000011 25665 45599
Q ss_pred CCCCCc-eEEEEecchhhhh
Q 023191 260 LRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 260 l~gp~g-G~l~~~~~~~~~~ 278 (286)
++++.. |++++++++.+..
T Consensus 262 l~~g~~~g~~~~~~~~~~~~ 281 (413)
T cd00610 262 LGGGLPLGAVLGREEIMDAF 281 (413)
T ss_pred ccCccccEEEEEcHHHHHhh
Confidence 976544 8888888877764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=124.41 Aligned_cols=162 Identities=15% Similarity=0.062 Sum_probs=118.1
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
+..+..++.||++. ..++++|+| +|.+++++++.+||.||+.+.+|.|... ++.+.|+.++.++-.
T Consensus 199 eAe~~AA~~fgAd~-----tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~h--------aLilsga~PVYl~P~ 265 (714)
T PRK15400 199 EAEEYIARVFNADR-----SYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTH--------LMMMSDVTPIYFRPT 265 (714)
T ss_pred HHHHHHHHHhCCCc-----EEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHH--------HHHHcCCeEEEeccc
Confidence 35588999999987 488899999 9998999999999999999999988765 344677666554322
Q ss_pred cCCCC---CCCC-----HHHHHHHhhhc-CCc---EEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCC
Q 023191 175 LNEST---GYID-----YDQLEKSATLF-RPK---LIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 241 (286)
Q Consensus 175 ~~~~~---~~~d-----~e~l~~~i~~~-~tk---~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~ 241 (286)
.+ .. +.++ .+.+++.+.++ +.+ .++++.++ .|.+.++++|+++|+.++ +++|+||+........
T Consensus 266 rn-~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~ 342 (714)
T PRK15400 266 RN-AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (714)
T ss_pred cc-ccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence 22 11 1334 89999999762 223 67777555 789999999999999887 7999998765433332
Q ss_pred C--CCCCC-cc---e--EEEeCCCCCCCCCCc-eEEEEecc
Q 023191 242 I--PSPFE-YA---D--VVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 242 ~--~~~~~-~~---D--~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
. ...+. ++ | +++-|+||++++-.- ++|-++..
T Consensus 343 ~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~ 383 (714)
T PRK15400 343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD 383 (714)
T ss_pred cCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC
Confidence 2 23332 45 5 999999999988655 77666543
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=115.46 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=138.7
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL 132 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~ 132 (286)
.+..+..+.+.+++..+-... -+.+...+ ..++-+++.+.+++++|++. .+++..|-..+...+.++
T Consensus 151 ~~~g~ca~~~~~~~~kygl~~-----css~~e~G---~~~~hkelE~l~A~f~g~e~-----a~vF~mGf~TNs~~~p~l 217 (519)
T KOG1357|consen 151 QSVGPCAEASLKSFDKYGLSR-----CSSRHEAG---TTEEHKELEELVARFLGVED-----AIVFSMGFATNSMNIPSL 217 (519)
T ss_pred ccCCcCChHHHHHHHHhcccc-----cccchhcc---cHHHHHHHHHHHHHhcCCcc-----eEEEeccccccccCccee
Confidence 344466788888876643221 11111111 12333344588999999875 489989977776688999
Q ss_pred cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh------cCC-----cEEEE
Q 023191 133 LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL------FRP-----KLIVA 201 (286)
Q Consensus 133 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~------~~t-----k~v~i 201 (286)
+.||..|+....+|.+... ++.+.|+..++.. .+ |+++||+.+++ .+| |++++
T Consensus 218 ~~~gsLIiSDelNHaSi~~--------GaRLSgAtiRVfk--HN------dm~~LEr~Lrd~I~~gqP~Thrp~kki~ii 281 (519)
T KOG1357|consen 218 LGKGSLIISDELNHASLIT--------GARLSGATTRVFR--HN------DMQGLERLLRDAIVYGQPKTHRPWKKILIC 281 (519)
T ss_pred ecCCcceeeccccchheec--------cccccCceEEEEe--cC------CHHHHHHHHHHHHhcCCCCcCCcchheeee
Confidence 9999999999988888754 6778888777664 33 55666665543 122 34444
Q ss_pred --c-CCCCCCccCHHHHHHHHHhcCCEEEEecccccccccc-CC--CC-CCC--CcceEEEeCCCCCCCCCCceEEEEec
Q 023191 202 --G-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA-GV--IP-SPF--EYADVVTTTTHKSLRGPRGAMIFFRK 272 (286)
Q Consensus 202 --~-~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~-~~--~~-~~~--~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (286)
. .+.-|.+..+.++.++++++.++++.|+||+.|+... +. -. +.. ..+|++++++.|+|+ -.||++.+++
T Consensus 282 vegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfg-a~GGyiagsk 360 (519)
T KOG1357|consen 282 VEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFG-AAGGYIAGSK 360 (519)
T ss_pred eccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcc-cccceecCcH
Confidence 2 5566788999999999999999999999999998842 21 11 111 248999999999775 4789999999
Q ss_pred chhhhhcc
Q 023191 273 GVKEINKQ 280 (286)
Q Consensus 273 ~~~~~~~~ 280 (286)
++.|+++.
T Consensus 361 ~lid~lrt 368 (519)
T KOG1357|consen 361 ELIDYLRT 368 (519)
T ss_pred HHHhhhcc
Confidence 99998873
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=122.44 Aligned_cols=160 Identities=17% Similarity=0.100 Sum_probs=116.1
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
..+..++.||++. ..++++|+| +|.+++++++.|||.||+.+.+|.|... ++.+.|+.++.++-..
T Consensus 200 Ae~~aA~~fgAd~-----tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~--------aLilsga~PVYl~P~~ 266 (713)
T PRK15399 200 AEEYIARTFGAEQ-----SYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAH--------LLMMSDVVPIWLKPTR 266 (713)
T ss_pred HHHHHHHHhCCCc-----EEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHH--------HHHHcCCeeEEecccc
Confidence 5588899999986 488899999 9999999999999999999999988765 3446676655543122
Q ss_pred CCCC---CCCCH-----HHHHHHhhhc----CCcEEEEcCCC-CCCccCHHHHHHHHHhcCCEE-EEeccccccccccCC
Q 023191 176 NEST---GYIDY-----DQLEKSATLF----RPKLIVAGASA-YARLYDYERIRKVCNKQKAIM-LADMAHISGLVAAGV 241 (286)
Q Consensus 176 ~~~~---~~~d~-----e~l~~~i~~~----~tk~v~i~~~n-~g~~~~l~~I~~ia~~~~~~v-ivD~a~~~g~~~~~~ 241 (286)
+ .. +.++. +.+++.+.++ +|++++++.++ .|.+.++++|+++| |+.+ ++|+||+........
T Consensus 267 n-~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~ 342 (713)
T PRK15399 267 N-ALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPI 342 (713)
T ss_pred c-ccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcc
Confidence 2 11 23444 8999998752 23578887556 78999999999999 5655 699998865433222
Q ss_pred CC--CCCC---cceEE---EeCCCCCCCCCCc-eEEEEecc
Q 023191 242 IP--SPFE---YADVV---TTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 242 ~~--~~~~---~~D~v---~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
.+ ..+. ++|.+ +-|+||++++-.- ++|-++..
T Consensus 343 ~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~ 383 (713)
T PRK15399 343 YQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGE 383 (713)
T ss_pred cCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCC
Confidence 11 2221 36766 9999999988755 88887654
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=129.26 Aligned_cols=167 Identities=13% Similarity=0.039 Sum_probs=118.4
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-cCCC--CeEEeccCCCCcccCccccccccccc
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPH--DRIMALDLPHGGHLSHGYQTDTKKIS 162 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~-~~~G--d~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (286)
+++.-+.-...+..++++.|++.. ++.+..+++ +..++++++ +.++ |+|++++..|+++..++.. -+.
T Consensus 116 sQG~Leal~~~Qt~la~LtG~~~a----naSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t----~a~ 187 (954)
T PRK05367 116 SQGRLEALLNFQTMVADLTGLEIA----NASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRT----RAE 187 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChh----hccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHH----HHH
Confidence 345555555688999999999884 588888888 555566666 5564 9999999999887654431 123
Q ss_pred cceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCC
Q 023191 163 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 241 (286)
Q Consensus 163 ~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~ 241 (286)
..|.+++.++. + + |++ .+ ++.++++. |+++|.+.|+++|+++||++|+++++|+.+.+.......
T Consensus 188 ~~G~ev~~~~~--~-~----d~~------~~-~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~p 253 (954)
T PRK05367 188 PLGIEVVVGDA--A-K----ALD------HD-DVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPP 253 (954)
T ss_pred hCCCEEEEecC--c-c----CCC------cc-cEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCCh
Confidence 45655666653 2 1 111 22 56666666 555888889999999999999999999977444333222
Q ss_pred CCCCCCcceEEEeCCCCC-----CCCCCceEEEEecchhhhh
Q 023191 242 IPSPFEYADVVTTTTHKS-----LRGPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 242 ~~~~~~~~D~v~~s~~K~-----l~gp~gG~l~~~~~~~~~~ 278 (286)
... |+|++++++||| |+||..|++++++++.+.+
T Consensus 254 ge~---GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~l 292 (954)
T PRK05367 254 GEM---GADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSM 292 (954)
T ss_pred hhc---CCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhC
Confidence 222 599999999999 8888669999999876544
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=104.39 Aligned_cols=219 Identities=13% Similarity=0.127 Sum_probs=138.5
Q ss_pred HcCceecCCCCCCCHHHHHHhccccccCCCCC-CCCC-cccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENFTSVSVMQAVGSVMTNKYSEG-YPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|..|.+.--|++.+...+.....-.++ +... -.|.+.++.+.|-+++...+.+.+|.+-.. .+|.+|+|++
T Consensus 30 ~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~--~NIalTnGSQ 107 (417)
T COG3977 30 PGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITA--QNIALTNGSQ 107 (417)
T ss_pred CCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCcc--ceeeecCCcc
Confidence 45688887777656666666544332211112 1111 236777888999999999999999996544 4899999999
Q ss_pred -HHHHHHHHh---cCCCC--eEEec-cCCCCcccCccccccccccccceeeeEE-Ee-cccCCC---CCCCCHHHHHHHh
Q 023191 124 -SNFQVYTAL---LKPHD--RIMAL-DLPHGGHLSHGYQTDTKKISAVSIFFET-MP-YRLNES---TGYIDYDQLEKSA 191 (286)
Q Consensus 124 -a~~~~l~a~---~~~Gd--~Vl~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~-v~-~~~~~~---~~~~d~e~l~~~i 191 (286)
+.+.++..| ...|+ +|+.+ .|+|-++-..+. -+..++. .| +...+. .+.+|.+++. +
T Consensus 108 s~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l---------~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i 176 (417)
T COG3977 108 SAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGL---------EEDLFVSAKPNIELLPAGQFKYHVDFEHLH--I 176 (417)
T ss_pred chHHHHHHHhcCccCCCcceeEeeccChhhcccccccc---------CccceeeccCCcccccccceeeccCHHHcc--c
Confidence 776566655 34554 45543 556655533221 1111111 11 011111 2478888884 5
Q ss_pred hhcCCcEEEEc-CCC-CCCc---cCHHHHHHHHHhcCCEEEEecccccccccc---CCCCCCCCcceEEEeCCCC-CCCC
Q 023191 192 TLFRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAA---GVIPSPFEYADVVTTTTHK-SLRG 262 (286)
Q Consensus 192 ~~~~tk~v~i~-~~n-~g~~---~~l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~~~~~~~~~D~v~~s~~K-~l~g 262 (286)
.+ ++.+|+++ |+| +|.+ .++.+|.++|++||+++++|.|++...-.. +..+ .|..--+.++|.+| .+.|
T Consensus 177 ~e-~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~-~w~~NiilC~SLSK~GLPG 254 (417)
T COG3977 177 GE-STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATP-LWNENIILCMSLSKLGLPG 254 (417)
T ss_pred cc-ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccc-cCCCCEEEEeehhhcCCCC
Confidence 55 89999998 888 7743 357788899999999999999977543222 2211 11124477999999 3455
Q ss_pred CCceEEEEecchhhhhc
Q 023191 263 PRGAMIFFRKGVKEINK 279 (286)
Q Consensus 263 p~gG~l~~~~~~~~~~~ 279 (286)
-+-|++..+.++..+..
T Consensus 255 ~R~GIiIane~viqait 271 (417)
T COG3977 255 SRCGIIIANEKVIQAIT 271 (417)
T ss_pred cceeEEEccHHHHHHHH
Confidence 56699999998887766
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=119.50 Aligned_cols=164 Identities=23% Similarity=0.243 Sum_probs=124.8
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
..+..++.||.+. ..++++|++ ++..++++++.|||.||+....|.|... ++.++|+..+...-..
T Consensus 75 Aqe~aA~~fgAd~-----tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~--------glilaGa~Pvyl~p~~ 141 (557)
T COG1982 75 AQELAARVFGADH-----TYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHH--------GLILAGATPVYLEPSR 141 (557)
T ss_pred HHHHHHHHhCCCc-----eEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHH--------HHHHcCCceEEecCCC
Confidence 5588999999987 478889999 9999999999999999999999988764 3446665554433223
Q ss_pred CCC---CCCCCHHHHHHHhhhcC-C-cEEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCC-C-C
Q 023191 176 NES---TGYIDYDQLEKSATLFR-P-KLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-F-E 247 (286)
Q Consensus 176 ~~~---~~~~d~e~l~~~i~~~~-t-k~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~-~-~ 247 (286)
++. -+.++.+.+.+.+.+++ . |+++++.++ .|.+.++++|.++++..++||.+|++|.+..-..+..+.. . .
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~ 221 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG 221 (557)
T ss_pred CccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhc
Confidence 321 14789999998776533 3 677777555 7899999999999999999999999988665544443332 2 3
Q ss_pred cceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 248 YADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 248 ~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
++|+++-|+||.+++-.- .+|-+++.
T Consensus 222 ~~~~~tqS~HK~l~alSQaS~iHv~~~ 248 (557)
T COG1982 222 GADFVTQSTHKLLAALSQASMIHVKDG 248 (557)
T ss_pred CceEEEechhhhhhhhhhhHHHhhCCC
Confidence 699999999999877543 88877763
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=112.01 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=117.0
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcC----
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK---- 134 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~---- 134 (286)
.|.+.+++.+.+.. +... .. .+ ..+...+++ +.++++++.+. .+.+.||+.|+.+++..+..
T Consensus 59 ~~~i~~a~~~~~~~-~~~~--~~-~~-~~~~~~~l~----~~l~~~~~~~~-----~~~~~SGs~A~e~al~~a~~~~~~ 124 (401)
T PRK00854 59 HPKILAAMVEQAGR-LTLT--SR-AF-RNDQLAPLY----EELAALTGSHK-----VLPMNSGAEAVETAIKAVRKWGYE 124 (401)
T ss_pred CHHHHHHHHHHHhh-cccc--cc-cc-CCHHHHHHH----HHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHHh
Confidence 78899999888765 2111 11 11 122333444 77777777542 36667777788877776632
Q ss_pred -----CC-CeEEeccCCCCcccCccccccccc-----cccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 135 -----PH-DRIMALDLPHGGHLSHGYQTDTKK-----ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 135 -----~G-d~Vl~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
+| ++|++++..|.+........-... .......+..++ ..|++++++.+.+ ++++|+++
T Consensus 125 ~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~le~~i~~-~~~aii~e~ 195 (401)
T PRK00854 125 VKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVP--------FGDAEALEAAITP-NTVAFLVEP 195 (401)
T ss_pred ccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeC--------CCCHHHHHHHhCC-CeEEEEEcc
Confidence 23 678888765554321111000000 000000111111 1489999999987 89999997
Q ss_pred CCC-CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCCCC-cceEEEeCCCCCCCCC--CceEEEEecc
Q 023191 203 ASA-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSPFE-YADVVTTTTHKSLRGP--RGAMIFFRKG 273 (286)
Q Consensus 203 ~~n-~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp--~gG~l~~~~~ 273 (286)
+.| +|...| +++|.++|++||+++|+|++|. +|............ ..|+++++ |+|+|. +.|+++++++
T Consensus 196 ~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~ 273 (401)
T PRK00854 196 IQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSE 273 (401)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHH
Confidence 444 565554 9999999999999999999986 33221101000011 36887764 998654 4688999988
Q ss_pred hhhhhc
Q 023191 274 VKEINK 279 (286)
Q Consensus 274 ~~~~~~ 279 (286)
+.+..+
T Consensus 274 ~~~~l~ 279 (401)
T PRK00854 274 VLGVLK 279 (401)
T ss_pred HHhccc
Confidence 776655
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=112.57 Aligned_cols=204 Identities=14% Similarity=0.151 Sum_probs=121.5
Q ss_pred cCceecCC--CC---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPS--EN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~--e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.|++..+ .+ ..++.+.+++.+.+.... ... +.|. .+..+++.+++++++|.+. +++++|
T Consensus 28 ~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~-~~~~-----~~~~~~l~~~la~~~g~~~------~~~~~s 92 (379)
T TIGR00707 28 EYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLV---HVS-NLYY-----TEPQEELAEKLVEHSGADR------VFFCNS 92 (379)
T ss_pred EEEEcCcchhhccCCCCCHHHHHHHHHHHhhcc---ccc-cccC-----CHHHHHHHHHHHhhCCCCE------EEEeCC
Confidence 45676553 22 346899999988776521 111 1111 2334456688888888753 666666
Q ss_pred hH-HHHHHHHHh---cC----CCCeEEeccCCCCcccCccccccccccccceeeeE----EEecccCCCCCC----CCHH
Q 023191 122 SP-SNFQVYTAL---LK----PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFE----TMPYRLNESTGY----IDYD 185 (286)
Q Consensus 122 ~~-a~~~~l~a~---~~----~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~v~~~~~~~~~~----~d~e 185 (286)
++ ++.++++.+ .. +||+|+++++.|.++..-.. ..+.... ..+ .. .+.. .|++
T Consensus 93 g~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~--------~~~~~~~~~~~~~~--~~-~~~~~~~~~d~~ 161 (379)
T TIGR00707 93 GAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGAL--------SATGQPKYQKGFEP--LV-PGFSYAPYNDIE 161 (379)
T ss_pred cHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHH--------HhcCChhhhccCCC--CC-CCceeeCCCCHH
Confidence 66 777666644 23 47999999976654421111 1111000 011 11 1111 1899
Q ss_pred HHHHHhhhcCCcEEEEcCCC-C-CCc-c---CHHHHHHHHHhcCCEEEEeccccccccccCC-CCC-CCC-cceEEEeCC
Q 023191 186 QLEKSATLFRPKLIVAGASA-Y-ARL-Y---DYERIRKVCNKQKAIMLADMAHISGLVAAGV-IPS-PFE-YADVVTTTT 256 (286)
Q Consensus 186 ~l~~~i~~~~tk~v~i~~~n-~-g~~-~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~-~~~-~~D~v~~s~ 256 (286)
++++.+++ ++++|++++.| . |.. . ++++|.++|+++++++|+|++|. +....+. ... ... ..|++ ++
T Consensus 162 ~l~~~~~~-~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~~~~~~~~~~~~d~~--t~ 237 (379)
T TIGR00707 162 SLKKAIDD-ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGKFFAYEHYGIEPDII--TL 237 (379)
T ss_pred HHHHHhhh-CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhhHHhcCCCCCEE--EE
Confidence 99999987 89999997545 2 322 2 37899999999999999999985 3222111 000 011 24555 46
Q ss_pred CCCCCCC-CceEEEEecchhhhhcc
Q 023191 257 HKSLRGP-RGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 257 ~K~l~gp-~gG~l~~~~~~~~~~~~ 280 (286)
+|+++++ +.|+++.++++.+..++
T Consensus 238 sK~~~~G~riG~~~~~~~~~~~~~~ 262 (379)
T TIGR00707 238 AKGLGGGVPIGATLAKEEVAEAFTP 262 (379)
T ss_pred cccccCCcccEEEEEcHHHHhhhcC
Confidence 8998643 44999998887766654
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=111.98 Aligned_cols=199 Identities=13% Similarity=0.131 Sum_probs=128.9
Q ss_pred CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcC-C
Q 023191 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK-P 135 (286)
Q Consensus 57 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~-~ 135 (286)
.+++...++|.. . ...|++.+....|+ +.++++||.+. -+.+.+|..+...+++.+++ |
T Consensus 54 apS~~m~aAM~~--G---------DD~Y~gdpSv~~Le----e~vael~G~E~-----alpthqGRgaE~Il~~~~~~~~ 113 (467)
T TIGR02617 54 AVTQSMQAAMMR--G---------DEAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKR 113 (467)
T ss_pred CCCHHHHHHHHc--C---------CcccccCchHHHHH----HHHHHHhCCce-----EEECCCCchHHHHHHHhhcccc
Confidence 378888888874 1 12245566677777 77778889876 24455776677778888888 7
Q ss_pred CCeEEeccC----CCCcccCccccccccccccceeeeEEEecc------cC-CCCCCCCHHHHHHHhhhc---CCcEEEE
Q 023191 136 HDRIMALDL----PHGGHLSHGYQTDTKKISAVSIFFETMPYR------LN-ESTGYIDYDQLEKSATLF---RPKLIVA 201 (286)
Q Consensus 136 Gd~Vl~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------~~-~~~~~~d~e~l~~~i~~~---~tk~v~i 201 (286)
||++.+-.. .|..++..+. ..+.+.|..++.++.+ .+ +..+.+|+++|++.|+++ +.-.+..
T Consensus 114 g~e~g~~~~~~~v~hn~~fett~----g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~ 189 (467)
T TIGR02617 114 EQEKGLDRSKMVAFSNYFFDTTQ----GHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVA 189 (467)
T ss_pred cccccccccccccceEEEEecch----HHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeee
Confidence 888885443 3333333211 1244566544443211 11 134789999999999852 2333333
Q ss_pred c-CCC--CCCcc---CHHHHHHHHHhcCCEEEEecccccc-cc--------ccCCCCCC-----CCcceEEEeCCCCCCC
Q 023191 202 G-ASA--YARLY---DYERIRKVCNKQKAIMLADMAHISG-LV--------AAGVIPSP-----FEYADVVTTTTHKSLR 261 (286)
Q Consensus 202 ~-~~n--~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g-~~--------~~~~~~~~-----~~~~D~v~~s~~K~l~ 261 (286)
. .+| -|... .++++.++|++||+.++.|+|..+. +. ..+..... +.++|.+++|+.|.++
T Consensus 190 tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglg 269 (467)
T TIGR02617 190 TITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAM 269 (467)
T ss_pred eEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCC
Confidence 3 334 24444 4678899999999999999997663 32 12221111 2459999999999999
Q ss_pred CCCceEEEEecc-hhhhhc
Q 023191 262 GPRGAMIFFRKG-VKEINK 279 (286)
Q Consensus 262 gp~gG~l~~~~~-~~~~~~ 279 (286)
.|-||+|+++++ +.++.+
T Consensus 270 ApvGg~Lag~d~~~~~l~~ 288 (467)
T TIGR02617 270 VPMGGLLCFKDDSFFDVYT 288 (467)
T ss_pred CcccceEEecchhHHHHHH
Confidence 999999999986 444444
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=102.86 Aligned_cols=176 Identities=18% Similarity=0.208 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEecc-CCCCcccCcc-ccc-cccccccce
Q 023191 89 YIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD-LPHGGHLSHG-YQT-DTKKISAVS 165 (286)
Q Consensus 89 ~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~-~~~~~~~~~~-~~~-~~~~~~~~g 165 (286)
+.+.|+ +-+++.||.+..- +.+.+.||+.|+..++..+++|||+.+... ..|....... ..- ......-.|
T Consensus 66 GRdtLe----~vyA~vf~aE~a~--VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfg 139 (416)
T COG4100 66 GRDTLE----RVYAQVFGAEAAL--VRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFG 139 (416)
T ss_pred chhHHH----HHHHHHhccccce--eeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhC
Confidence 345555 8899999997755 678899999988889999999999998754 2222111000 000 001122344
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc----CCCCC--CccCHHHHHHHHHhc--CCEEEEecccccccc
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG----ASAYA--RLYDYERIRKVCNKQ--KAIMLADMAHISGLV 237 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~----~~n~g--~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~ 237 (286)
..++.+++. .++.+|++.+.+.+++ +||+|.|. ...-+ .+.++++++++.++- +++++||.++ |.+
T Consensus 140 i~Y~~v~Lt---~~gkiD~~~v~~~i~~-~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCY--GEF 213 (416)
T COG4100 140 IKYKAVPLT---ADGKIDIQAVKTAISD-RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCY--GEF 213 (416)
T ss_pred cceeecccc---cCCcccHHHHHHhcCc-cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccc--hhh
Confidence 556666644 4689999999999998 99999995 22222 455677777777765 7899999984 433
Q ss_pred ccCCCCCCCCcceEEEeCCCCCCCCC---CceEEEEecchhhh
Q 023191 238 AAGVIPSPFEYADVVTTTTHKSLRGP---RGAMIFFRKGVKEI 277 (286)
Q Consensus 238 ~~~~~~~~~~~~D~v~~s~~K~l~gp---~gG~l~~~~~~~~~ 277 (286)
.....+.. -|+|++.+|+-|.-+|. .||++.+|.++.+.
T Consensus 214 vE~~EPt~-vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~ 255 (416)
T COG4100 214 VEEKEPTH-VGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEA 255 (416)
T ss_pred hhccCccc-cchhhhccceeeCCCCceeeccceeechHHHHHh
Confidence 33333321 26999999999988774 56999999988754
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-11 Score=109.03 Aligned_cols=198 Identities=14% Similarity=0.119 Sum_probs=116.6
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCC-
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH- 136 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~G- 136 (286)
+|.+.+++.+.+.... ... ..|.... . .++.++++++++.+.. ..|++++|++ ++.++++....+|
T Consensus 61 ~p~v~~ai~~~~~~~~---~~~-~~~~~~~-~----~~la~~l~~~~~~~~~---~~v~~~~sgsea~~~al~~~~~~g~ 128 (398)
T PRK03244 61 HPAVVEAVTRQLATLG---HVS-NLFATEP-Q----IALAERLVELLGAPEG---GRVFFCNSGAEANEAAFKLARLTGR 128 (398)
T ss_pred CHHHHHHHHHHHHhcc---Ccc-CccCCHH-H----HHHHHHHHHhCCCCCC---CEEEEeCchHHHHHHHHHHHHHHCC
Confidence 6899999988876521 111 1122211 1 2455788888875321 2588888777 8887887665566
Q ss_pred CeEEeccCCCCcccCccccc-----cccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC-C-CCCc
Q 023191 137 DRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS-A-YARL 209 (286)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~-n-~g~~ 209 (286)
+.|+..+..|.+........ +.......+..+..+| ..|++++++.+.+ ++++|++++. | +|..
T Consensus 129 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~l~~~~~~-~~~aviiep~~~~~G~~ 199 (398)
T PRK03244 129 TKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVP--------YGDVDALAAAVDD-DTAAVFLEPIQGEAGVV 199 (398)
T ss_pred CeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeC--------CCCHHHHHHhhcC-CeEEEEEecccCCCCCc
Confidence 56777766665542111000 0000000000111111 1378999998865 8899999733 4 5655
Q ss_pred cC----HHHHHHHHHhcCCEEEEeccccccccccCC-CCCCCC--cceEEEeCCCCCCCCCC-ceEEEEecchhhhhcc
Q 023191 210 YD----YERIRKVCNKQKAIMLADMAHISGLVAAGV-IPSPFE--YADVVTTTTHKSLRGPR-GAMIFFRKGVKEINKQ 280 (286)
Q Consensus 210 ~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~~~~--~~D~v~~s~~K~l~gp~-gG~l~~~~~~~~~~~~ 280 (286)
.| +++|.++|++||+++|+|++|. |.-..+. ...... ..|+++ ++|+|++.- -|++++++++.+...+
T Consensus 200 ~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pDi~t--~sK~l~~G~~ig~~~~~~~~~~~~~~ 275 (398)
T PRK03244 200 PPPAGYLAAAREITDRHGALLVLDEVQT-GIGRTGAWFAHQHDGVTPDVVT--LAKGLGGGLPIGACLAFGPAADLLTP 275 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEecccc-CCcccchHHhhhhhCCCCCEEE--EchhhhCCcccEEEEEcHHHHhhccC
Confidence 55 8899999999999999999985 3211110 000011 267664 469997543 3888888887776653
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=110.55 Aligned_cols=195 Identities=12% Similarity=0.078 Sum_probs=115.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh----
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---- 132 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~---- 132 (286)
-.|.+.+++.+.+......+ . .+ ..+... ++.+++.+..+.+ .|++++|++ ++.+++++.
T Consensus 48 ~~p~v~~a~~~~~~~~~~~~---~-~~-~~~~~~----~la~~l~~~~~~~------~v~~~~sGseA~~~al~~ar~~~ 112 (389)
T PRK01278 48 AHPHLVEALKEQAEKLWHVS---N-LY-RIPEQE----RLAERLVENSFAD------KVFFTNSGAEAVECAIKTARRYH 112 (389)
T ss_pred CCHHHHHHHHHHHHhcCccc---c-cc-CChHHH----HHHHHHHhhCCCC------EEEEcCCcHHHHHHHHHHHHHHH
Confidence 47899999988776522111 1 11 112222 3446677666433 366666555 888777665
Q ss_pred cCCCC----eEEeccCCCCcccCccccccccccccceeeeEEE-ec-ccCCCCC----CCCHHHHHHHhhhcCCcEEEEc
Q 023191 133 LKPHD----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM-PY-RLNESTG----YIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 133 ~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v-~~-~~~~~~~----~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
.++|| +|+++++.|+++....... .+ ..... .+ +.. +++ ..|++++++.+++ ++++|+++
T Consensus 113 ~~~G~~~r~~vi~~~~~yhg~~~~~~~~-------~~-~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~l~~-~~~avive 182 (389)
T PRK01278 113 YGKGHPERYRIITFEGAFHGRTLATIAA-------GG-QEKYLEGFGPLV-PGFDQVPFGDIEALKAAITP-NTAAILIE 182 (389)
T ss_pred HhcCCCCCCEEEEECCCcCCCcHHHHhc-------cC-ChhhcccCCCCC-CCceEeCCCCHHHHHHhhCC-CeEEEEEe
Confidence 56777 8999997777664322111 01 00000 00 001 112 2589999999987 89999998
Q ss_pred CCC--CC-C---ccCHHHHHHHHHhcCCEEEEeccccccccccCC-CCC-CCC-cceEEEeCCCCCCC-CCCceEEEEec
Q 023191 203 ASA--YA-R---LYDYERIRKVCNKQKAIMLADMAHISGLVAAGV-IPS-PFE-YADVVTTTTHKSLR-GPRGAMIFFRK 272 (286)
Q Consensus 203 ~~n--~g-~---~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~-~~~-~~D~v~~s~~K~l~-gp~gG~l~~~~ 272 (286)
|.+ .| . ...+++|.++|++||+++|+|++|. |....+. ... ... ..|+ .+++|.++ |.+.|++++++
T Consensus 183 p~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi--~t~sK~l~~G~~ig~~~~~~ 259 (389)
T PRK01278 183 PIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKLFAHEWAGVTPDI--MAVAKGIGGGFPLGACLATE 259 (389)
T ss_pred cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcceeecccCCCCCE--EEEehhccCCcceEEEEEcH
Confidence 555 33 2 2368999999999999999999986 3321111 110 011 1454 46789885 34568899988
Q ss_pred chhhhhcc
Q 023191 273 GVKEINKQ 280 (286)
Q Consensus 273 ~~~~~~~~ 280 (286)
++.+..++
T Consensus 260 ~~~~~~~~ 267 (389)
T PRK01278 260 EAAKGMTP 267 (389)
T ss_pred HHHhccCC
Confidence 87666543
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-11 Score=106.81 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=128.2
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC-hH-HH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SP-SN 125 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG-~~-a~ 125 (286)
.+|+++|...+|++|++++.+.+.+....|.+--...-.+....++-+.+.+.++++++++.+. .|++..| ++ +.
T Consensus 5 ~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y---~Vlfl~GggT~~~ 81 (364)
T PRK12462 5 QLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEY---GVVFLQGGSSLQF 81 (364)
T ss_pred cceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCC---eEEEEeccHHHHH
Confidence 5789999999999999999987766332221110000112345667777889999999995433 4655444 55 77
Q ss_pred HHHHHHhcCCCCeEE-eccCCCCcccCccccccccccccceeeeEEEecccC-CCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 023191 126 FQVYTALLKPHDRIM-ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN-ESTGYIDYDQLEKSATLFRPKLIVAGA 203 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~d~e~l~~~i~~~~tk~v~i~~ 203 (286)
.++...++++||+++ +.. .+.++..+ ...+...| .+..+..... ..+..++++++ .+.+ +.+.|.++.
T Consensus 82 ea~~~Nll~~g~~~~~~~~---tG~fg~r~---~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~-d~~~v~~t~ 151 (364)
T PRK12462 82 SMIPMNFSRPGAAAPEYVT---TGYWSRKA---IGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDA-RAPFRHYVS 151 (364)
T ss_pred HHHHHHcCCCCCcEEEEEe---CCHHHHHH---HHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCC-CCcEEEEcc
Confidence 778899999999765 444 12221111 11222233 2333321111 01235666665 2233 567777763
Q ss_pred CC--CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 204 SA--YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 204 ~n--~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
.+ +|...+ ++.+.++.++++|++..++..+.++.. .|++.++.+|.|+ |.| +++++++++.+.
T Consensus 152 NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~-----~dvi~agsQKnlg-P~Gltvvivs~~al~~ 217 (364)
T PRK12462 152 NETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEA-----YGMVYAHAQKNLG-PAGVTVAIIRRALLER 217 (364)
T ss_pred CCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHH-----ccEEEeeccccCC-CCceEEEEECHHHHhh
Confidence 33 665554 333446899999999888776655543 4899999999997 889 999999987543
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-11 Score=99.07 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=117.7
Q ss_pred HHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCC-CeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 99 KRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 99 ~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
..++.--++.++ +|.++.|+. .+-+++++.+.|| ++|+.+. |.|.+|.-.+.+.+.+++.+| .+
T Consensus 76 ~a~~~dkpLt~d----nic~GvGsDE~ID~iiR~~c~PGkeKIl~cP--------PtysMY~v~A~iNd~eVvkvp--l~ 141 (375)
T KOG0633|consen 76 DALAQDKPLTSD----NICVGVGSDELIDLIIRCVCDPGKEKILDCP--------PTYSMYVVDAAINDAEVVKVP--LN 141 (375)
T ss_pred hhcccCCCCCcc----ceEEecCcHHHHHHHHhheecCCccceeecC--------CcceeEEEEeecCCceEEEec--CC
Confidence 333333455664 599999999 7777999999999 8999999 788888777788887776665 44
Q ss_pred CCCCCCCHHHHHHHhhhc-CCcEEEEc-CCC-CCCccCHHHHHHHHHhc-CCEEEEeccccccccccCCCCCCC--Ccc-
Q 023191 177 ESTGYIDYDQLEKSATLF-RPKLIVAG-ASA-YARLYDYERIRKVCNKQ-KAIMLADMAHISGLVAAGVIPSPF--EYA- 249 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~-~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~-~~~vivD~a~~~g~~~~~~~~~~~--~~~- 249 (286)
.+|.+|.|++.+.+... ++|+++++ |.| +|.....+.|.++.+-- |.+|++|+|+. ..... ....++ .+-
T Consensus 142 -pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYi-dFsg~-~S~~~lV~kYpN 218 (375)
T KOG0633|consen 142 -PDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYI-DFSGV-ESRMKLVKKYPN 218 (375)
T ss_pred -CCccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeE-eeccc-cccchHhHhCCc
Confidence 57999999999988653 68999998 555 66777777887777543 78999999943 22211 100111 112
Q ss_pred eEEEeCCCCCC--CCCCceEEEEecchhhhhcc
Q 023191 250 DVVTTTTHKSL--RGPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 250 D~v~~s~~K~l--~gp~gG~l~~~~~~~~~~~~ 280 (286)
=++.-+++|.| .|-+-|+-++..++..++..
T Consensus 219 LivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~ 251 (375)
T KOG0633|consen 219 LIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNR 251 (375)
T ss_pred eeehhhhhhhcCcceeEeecccccHHHHHHHHh
Confidence 26677889976 45555998888888777653
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-11 Score=106.91 Aligned_cols=167 Identities=10% Similarity=0.051 Sum_probs=112.9
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc-CCCCeEEeccCCCCcccCccccccccccccce
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL-KPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+...++-+++.+.++++++.+.+. .-++++.+++ ++.+++..++ ++||+|++.. .++-.+ ....++..|
T Consensus 35 ~~F~~i~~e~~~~L~~l~~~~~~~--~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-----~FG~r~--~~eia~~~g 105 (374)
T TIGR01365 35 KLGKEKLAEAIKKTREMLGVPADY--LIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-----SFGKGW--VTDVTKQLK 105 (374)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCc--EEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-----HHHHHH--HHHHHHhcC
Confidence 445677778889999999985332 1234344455 8888999998 5899999753 222111 112333455
Q ss_pred e-eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE-cCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 023191 166 I-FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA-GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243 (286)
Q Consensus 166 ~-~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i-~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~ 243 (286)
. .+..+. .. .+..+|+++++. +..+.+. +.+.+|...|+++|.+.+ +++++++|+..++|..+.+..
T Consensus 106 ~~~v~~l~--~~-~g~~~~~~~ve~-----~~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d- 174 (374)
T TIGR01365 106 LPDVRVLE--AE-YGKLPDLKKVDF-----KNDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH- 174 (374)
T ss_pred CCCcEEEc--CC-CCCCCCHHHcCC-----CCCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh-
Confidence 5 244443 22 445789998873 1223322 255588888987665322 589999999999988776554
Q ss_pred CCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 244 SPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 244 ~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
++|+++++.+|+|++|.| +++.++++.....
T Consensus 175 ----~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~ 206 (374)
T TIGR01365 175 ----KLDVVTFSWQKVLGGEGAHGMLILSPRAVARL 206 (374)
T ss_pred ----HCcEEEEechhccCCCCceEEEEECHHHHHHH
Confidence 399999999999999999 9999998765443
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-10 Score=103.59 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=115.5
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhc----
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL---- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~---- 133 (286)
.+|.+++++.+.+.. +. +....++ .+ ....+++.++++++.+. -++++||+.++..++....
T Consensus 48 ~~p~v~~a~~~~~~~-~~--~~~~~~~--~~----~~~~~~~~l~~~~~~~~-----~~~~~SGs~A~e~al~~~~~~~~ 113 (400)
T PTZ00125 48 CHPKILAALINQAQK-LT--LTSRAFY--ND----VLGLAEKYITDLFGYDK-----VLPMNSGAEAGETALKFARKWGY 113 (400)
T ss_pred CCHHHHHHHHHHHHh-cc--ccccccc--CH----HHHHHHHHHHhCCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence 489999999887754 21 1111111 12 33345577777776542 3666777778887777553
Q ss_pred ------CCCCeEEeccCCCCcccCcccccccc-ccc-cce---eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 134 ------KPHDRIMALDLPHGGHLSHGYQTDTK-KIS-AVS---IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 134 ------~~Gd~Vl~~~~~~~~~~~~~~~~~~~-~~~-~~g---~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
..+++|+..+..|.+...-....... ... ..+ ..+..+ ...|++++++.+...++++|++.
T Consensus 114 ~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~d~~~le~~l~~~~~~~v~~e 185 (400)
T PTZ00125 114 EVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELV--------DYNDVEALEKLLQDPNVAAFIVE 185 (400)
T ss_pred hccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEe--------CCCCHHHHHHHhCCCCeEEEEEc
Confidence 13577888876555442111100000 000 000 001111 12389999999863378999987
Q ss_pred CC-C-CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCC--CCCCCcceEEEeCCCCCCCCCC--ceEEEEe
Q 023191 203 AS-A-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVI--PSPFEYADVVTTTTHKSLRGPR--GAMIFFR 271 (286)
Q Consensus 203 ~~-n-~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~--~~~~~~~D~v~~s~~K~l~gp~--gG~l~~~ 271 (286)
+. | +|...+ +++|.++|++||+++|+|++|. .|....... ...+ ..|++++ .|+|+++. -|+++++
T Consensus 186 p~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~-~pd~~~~--sK~l~~g~~~ig~v~~~ 262 (400)
T PTZ00125 186 PIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGV-KPDIVLL--GKALSGGLYPISAVLAN 262 (400)
T ss_pred CccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCC-CCCEEEE--cccccCCCcCcEEEEEc
Confidence 33 3 566665 9999999999999999999975 221110000 0110 2577765 49997653 4999999
Q ss_pred cchhhhhcc
Q 023191 272 KGVKEINKQ 280 (286)
Q Consensus 272 ~~~~~~~~~ 280 (286)
+++.+....
T Consensus 263 ~~~~~~~~~ 271 (400)
T PTZ00125 263 DDVMLVIKP 271 (400)
T ss_pred HHHHhhccC
Confidence 887776543
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-10 Score=100.76 Aligned_cols=183 Identities=15% Similarity=0.217 Sum_probs=122.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHCCC-CCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccc
Q 023191 83 YYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 160 (286)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~ 160 (286)
.|+.+.+..+|...+++.....++. ...+| +|.+|+|.+ +...+++.++++||.|++-...|.+-+. .
T Consensus 95 QYg~s~G~peLl~fik~h~~~~ih~p~~~~w--diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~--------s 164 (472)
T KOG0634|consen 95 QYGQSSGIPELLLFIKDHNRPTIHAPPYKNW--DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQ--------S 164 (472)
T ss_pred ccccccCcHHHHHHHHHhccccccCCCCCCc--eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHH--------h
Confidence 5788889998886665533323333 33444 799999999 8888999999999999998865555433 4
Q ss_pred cccceeeeEEEecccCCCCCCCCHHHHHHHhhh--------cCCcEEEE--cCCC-CCCccC---HHHHHHHHHhcCCEE
Q 023191 161 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--------FRPKLIVA--GASA-YARLYD---YERIRKVCNKQKAIM 226 (286)
Q Consensus 161 ~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--------~~tk~v~i--~~~n-~g~~~~---l~~I~~ia~~~~~~v 226 (286)
.+..| +..+|++.| ...+++|.|++.+.. .++++++. +..| +|...+ -++|.+||++|++++
T Consensus 165 ~~a~g--v~~ipv~md--~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLI 240 (472)
T KOG0634|consen 165 MEALG--VKIIPVKMD--QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLI 240 (472)
T ss_pred ccccC--ceEEecccc--CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEE
Confidence 45566 445665655 457899999998743 24667664 2555 664443 559999999999999
Q ss_pred EEecccccccccc-------------------CCCCCCC----CcceEEEeCCCCCC-CCCCceEEEEecc-hhhhhc
Q 023191 227 LADMAHISGLVAA-------------------GVIPSPF----EYADVVTTTTHKSL-RGPRGAMIFFRKG-VKEINK 279 (286)
Q Consensus 227 ivD~a~~~g~~~~-------------------~~~~~~~----~~~D~v~~s~~K~l-~gp~gG~l~~~~~-~~~~~~ 279 (286)
|.|+.++.-.... .+.+..+ +|.-+-..|++|-+ .|.|-|++.+++- +..++.
T Consensus 241 VeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~ 318 (472)
T KOG0634|consen 241 VEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILD 318 (472)
T ss_pred EecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhh
Confidence 9999977433220 0111121 13335588999955 3334499999884 445554
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-10 Score=102.57 Aligned_cols=195 Identities=13% Similarity=0.166 Sum_probs=112.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhc----
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL---- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~---- 133 (286)
-.|.+.+++.+.+.... .... .+ ..+...+ +.++++++.+.+. .+++.||+.|+.+++....
T Consensus 57 ~~p~v~~ai~~~~~~~~---~~~~-~~-~~~~~~~----l~~~l~~~~~~~~-----~~~~~SGseA~e~Alk~a~~~~~ 122 (396)
T PRK04073 57 RHPKIIQALKDQADKVT---LTSR-AF-HSDQLGP----WYEKVAKLTGKDM-----VLPMNTGAEAVETAIKAARRWAY 122 (396)
T ss_pred CCHHHHHHHHHHHhhcc---cccc-cc-CCHHHHH----HHHHHHhcCCCCe-----EEEcCChHHHHHHHHHHHHHHhh
Confidence 47899999988776521 1111 11 1122223 4477777766432 3556677778876666542
Q ss_pred -----CCC-CeEEeccCCCCcccCccccc-----cccc--cccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 134 -----KPH-DRIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 134 -----~~G-d~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
++| ++|+..+..|.+...-...+ +... ....+ +..++ -.|++++++.+.+ ++++|+
T Consensus 123 ~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~d~~~l~~~i~~-~~~~vi 191 (396)
T PRK04073 123 DVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPG--IKKIP--------YGDLEALKAAITP-NTAAFL 191 (396)
T ss_pred hccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCC--ceEeC--------CCCHHHHHHhccc-CeEEEE
Confidence 134 67888875555442111000 0000 00001 11111 1278999999876 899999
Q ss_pred EcCC-C-CCCccC----HHHHHHHHHhcCCEEEEeccccccccccC-CCCCCC-C-cceEEEeCCCCCCCCC--CceEEE
Q 023191 201 AGAS-A-YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSPF-E-YADVVTTTTHKSLRGP--RGAMIF 269 (286)
Q Consensus 201 i~~~-n-~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~~~-~-~~D~v~~s~~K~l~gp--~gG~l~ 269 (286)
+++. | +|...+ +++|.++|++||+++|+|++|. |....+ ...... . ..|++++ +|.++++ +.|+++
T Consensus 192 iep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~pdi~~~--sK~lg~gg~~ig~~~ 268 (396)
T PRK04073 192 VEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-GLGRTGKLFACDWDNVTPDMYIL--GKALGGGVFPISCVA 268 (396)
T ss_pred EcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcCcHHHHhhhcCCCCCEEEe--cccccCCCCcceEEE
Confidence 8844 4 565444 8999999999999999999987 221111 110011 1 2677664 6988664 459999
Q ss_pred Eecchhhhhcc
Q 023191 270 FRKGVKEINKQ 280 (286)
Q Consensus 270 ~~~~~~~~~~~ 280 (286)
+++++.+...+
T Consensus 269 ~~~~i~~~~~~ 279 (396)
T PRK04073 269 ANRDILGVFTP 279 (396)
T ss_pred EcHHHHhhhcC
Confidence 99888776654
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=104.69 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=116.1
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCC-
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH- 136 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~G- 136 (286)
.|.+.+++.+.+.... .... .+..+++.++.++++++.+.+ ++++++|++ ++.++++.+...+
T Consensus 57 ~p~v~~a~~~~~~~~~---~~~~------~~~~~~~~~la~~l~~~~~~~------~v~~~~gg~eA~~~al~~a~~~~~ 121 (396)
T PRK02627 57 HPKLVEAIQEQAAKLI---HTSN------LYYIEPQEELAEKLVELSGMD------KVFFCNSGAEANEAAIKLARKYGH 121 (396)
T ss_pred CHHHHHHHHHHHhhcc---cccc------ccCCHHHHHHHHHHHhhcCCC------EEEECCCcHHHHHHHHHHHHHHhc
Confidence 5889999988775421 1001 112355666778888887653 488888888 8887887664433
Q ss_pred ------CeEEeccCCCCcccCccccccccccccceeeeEEEe-cccCCCCC----CCCHHHHHHHhhhcCCcEEEEcCCC
Q 023191 137 ------DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP-YRLNESTG----YIDYDQLEKSATLFRPKLIVAGASA 205 (286)
Q Consensus 137 ------d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~-~~~~~~~~----~~d~e~l~~~i~~~~tk~v~i~~~n 205 (286)
++|+++++.|.+....... ..+......+ .+.. ++. ..|++++++.+.+ ++++|++++.+
T Consensus 122 ~~~~~~~~ii~~~~~yhg~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~ 192 (396)
T PRK02627 122 KKGIEKPEIITAENSFHGRTLATLS-------ATGQPKYQEGFEPLV-EGFIYVPFNDIEALKAAITD-KTAAVMLEPIQ 192 (396)
T ss_pred ccCCCCCeEEEECCCcCcccHHHHH-------hcCCccccccCCCCC-CCceEeCCCCHHHHHHhcCC-CeEEEEEeccc
Confidence 6788888666544211110 0110000000 0111 111 2289999999976 89999997443
Q ss_pred --CC-Cc---cCHHHHHHHHHhcCCEEEEeccccccccccCC-CCC-CCC-cceEEEeCCCCCCCCC-CceEEEEecchh
Q 023191 206 --YA-RL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGV-IPS-PFE-YADVVTTTTHKSLRGP-RGAMIFFRKGVK 275 (286)
Q Consensus 206 --~g-~~---~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~-~~~-~~D~v~~s~~K~l~gp-~gG~l~~~~~~~ 275 (286)
.| .. ..+++|.++|++||+++|+|++|. |....+. ... ... ..|++ +++|.+++. +.|++++++++.
T Consensus 193 ~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~~~~G~rig~~~~~~~~~ 269 (396)
T PRK02627 193 GEGGVNPADKEYLQALRELCDENGILLILDEVQT-GMGRTGKLFAYQHYGIEPDIM--TLAKGLGGGVPIGAVLAKEKVA 269 (396)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-CCCccCceeeehhcCCCCCEE--EEcchhhCCcccEEEEEcHHHH
Confidence 33 22 248899999999999999999976 3321111 110 111 24655 467988633 449999988877
Q ss_pred hhhcc
Q 023191 276 EINKQ 280 (286)
Q Consensus 276 ~~~~~ 280 (286)
+...+
T Consensus 270 ~~~~~ 274 (396)
T PRK02627 270 DVFTP 274 (396)
T ss_pred hccCC
Confidence 66654
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.6e-10 Score=102.19 Aligned_cols=207 Identities=15% Similarity=0.086 Sum_probs=121.7
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.+++..+-. ..+|.+.+++.+.+.+.. .| ...+....++. +.+++.+... + .|++++|
T Consensus 49 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~--~~-----~~~~~~~~~la----e~l~~~~~~~-~----~v~~~~s 112 (423)
T TIGR00713 49 EYIDYVLSWGPLILGHAHPRVVEAVKEALERGT--SY-----GAPTEAEILLA----KEIISRVPSV-E----MVRFVNS 112 (423)
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhCC--cC-----CCCCHHHHHHH----HHHHHhCCcc-c----EEEEeCC
Confidence 4466655432 358999999998886521 11 11223344444 6666665432 2 4777777
Q ss_pred hH-HHHHHHHHh--cCCCCeEEeccCCCCcccCcccc------------ccccccccceeeeEEEecccCCCCCCCCHHH
Q 023191 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQ------------TDTKKISAVSIFFETMPYRLNESTGYIDYDQ 186 (286)
Q Consensus 122 ~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~------------~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~ 186 (286)
++ ++.++++.. ...+++|+.+++.|.+....... .........+. ..+.++ ..|+++
T Consensus 113 GseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~d~~~ 184 (423)
T TIGR00713 113 GTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAK--LTLVLP------YNDLEA 184 (423)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCccccc--ceEEeC------CCCHHH
Confidence 66 887666643 34568999999877775321110 00000000000 011111 128999
Q ss_pred HHHHhhh--cCCcEEEEc--CCCCCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCC-CCCCC-cceEEEeCC
Q 023191 187 LEKSATL--FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVI-PSPFE-YADVVTTTT 256 (286)
Q Consensus 187 l~~~i~~--~~tk~v~i~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-~~~~~-~~D~v~~s~ 256 (286)
+++.+.+ .++++|++. ++|.|...+ +++|.++|++||+++|+|++|. |....... ...+. ..|++ ++
T Consensus 185 l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~r~g~~~~~~~~~~~pDi~--t~ 261 (423)
T TIGR00713 185 LEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT-GFRVALGGAQEYFGVEPDLT--TL 261 (423)
T ss_pred HHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-ccccCcchhHHHhCCCcchh--hh
Confidence 9998873 267888884 666664444 7899999999999999999974 33221110 00011 25644 68
Q ss_pred CCCCCC-CCceEEEEecchhhhhcc
Q 023191 257 HKSLRG-PRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 257 ~K~l~g-p~gG~l~~~~~~~~~~~~ 280 (286)
.|.+++ .+.|++++++++.+..++
T Consensus 262 sK~l~~G~pig~v~~~~~i~~~~~~ 286 (423)
T TIGR00713 262 GKIIGGGLPVGAFGGRREIMERLAP 286 (423)
T ss_pred hhhhcCCCceeeeeEHHHHHHhhCc
Confidence 998853 456999999988877653
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-09 Score=98.00 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=112.4
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh---c-
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---L- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~---~- 133 (286)
-+|++.+++.+.+.+.+..+ . .+ .. ....++.++++++++.+. -.++.||+.++..+++.. .
T Consensus 52 ~~p~v~~a~~~~~~~~~~~~---~-~~-~~----~~~~~la~~L~~~~~~~~-----~~f~~SGseA~e~Alk~ar~~~~ 117 (397)
T TIGR03246 52 AHPELVKALIEQADKLWHIG---N-GY-TN----EPVLRLAKKLVDATFADK-----VFFCNSGAEANEAALKLARRYAL 117 (397)
T ss_pred CCHHHHHHHHHHHHhccccc---C-cc-CC----HHHHHHHHHHHhhCCCCE-----EEEeCCcHHHHHHHHHHHHHHHH
Confidence 48999999988876522111 1 01 11 222335577777776432 355566777888766654 1
Q ss_pred ----CCCCeEEeccCCCCcccCccccc-----cccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 023191 134 ----KPHDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS 204 (286)
Q Consensus 134 ----~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~ 204 (286)
...++|+..+..|.+...-.... ++....-....+..++ ..|++++++.+.+ ++++|+++|.
T Consensus 118 ~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~l~~~l~~-~~aavi~Epi 188 (397)
T TIGR03246 118 DKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAP--------YNDLAAAKALISD-KTCAVIVEPI 188 (397)
T ss_pred hcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeC--------CCCHHHHHHHhcc-CeEEEEEecc
Confidence 13456777775555442111100 0000000000011111 1389999999976 8999999855
Q ss_pred C-C-CC----ccCHHHHHHHHHhcCCEEEEeccccccccccCC-CC-CCCC-cceEEEeCCCCCCC-CCCceEEEEecch
Q 023191 205 A-Y-AR----LYDYERIRKVCNKQKAIMLADMAHISGLVAAGV-IP-SPFE-YADVVTTTTHKSLR-GPRGAMIFFRKGV 274 (286)
Q Consensus 205 n-~-g~----~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~-~~~~-~~D~v~~s~~K~l~-gp~gG~l~~~~~~ 274 (286)
+ . |. ...+++|.++|++||+++|+|++| .|.-..+. .. ..+. ..|++ ++.|.++ |.+.|++++++++
T Consensus 189 ~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lggG~pigav~~~~~i 265 (397)
T TIGR03246 189 QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDIL--TSAKALGGGFPIGAMLTTTEI 265 (397)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCccccchhhhhcCCCCCEE--EeehhhhCCcceeEEEEcHHH
Confidence 4 3 32 234999999999999999999998 44421111 00 0011 26766 5689884 4444888899888
Q ss_pred hhhhcc
Q 023191 275 KEINKQ 280 (286)
Q Consensus 275 ~~~~~~ 280 (286)
.+..+.
T Consensus 266 ~~~~~~ 271 (397)
T TIGR03246 266 AAHLKV 271 (397)
T ss_pred HHhccC
Confidence 777653
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=99.14 Aligned_cols=167 Identities=18% Similarity=0.193 Sum_probs=101.0
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh---cCCCCeEEeccCCCCcccCccccccccccc
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---LKPHDRIMALDLPHGGHLSHGYQTDTKKIS 162 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (286)
+++.-+.--+.+..++++.|.+. ++.-...|++ +..+++++. -+.+++|+++...|+.+..... . -+.
T Consensus 105 sQG~Lq~lfe~Qs~i~eLTGmdv----aNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~-t---~a~ 176 (429)
T PF02347_consen 105 SQGRLQALFEYQSMICELTGMDV----ANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLR-T---YAA 176 (429)
T ss_dssp BHHHHHHHHHHHHHHHHHHTSSE----E-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHH-H---HCC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCc----cCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHH-H---hhh
Confidence 45555555568899999999986 3456666776 333333333 3345699999988887754221 1 123
Q ss_pred cceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCC
Q 023191 163 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 241 (286)
Q Consensus 163 ~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~ 241 (286)
..|.+++.++ .+ +++..| ++ ++.+|++..+| .|...++++|++++|++|.++++ .+ .......
T Consensus 177 ~~g~~iv~~~--~~-~~~~~d--------~~-~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~a---d~~aL~~ 240 (429)
T PF02347_consen 177 PLGIEIVEVP--LD-EDGTTD--------DD-DTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GA---DPNALGG 240 (429)
T ss_dssp HCCEEEEEE---BB-TTCSB---------ST-TEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CG---GCCGCCT
T ss_pred hCCeEEEEec--cc-ccCCcc--------cc-CeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ec---CHHHHhC
Confidence 4565555554 44 344555 44 89999998666 78888899999999999999887 44 3333344
Q ss_pred CCCCCC-cceEEEeCCCCCC------CCCCceEEEEecchhhhh
Q 023191 242 IPSPFE-YADVVTTTTHKSL------RGPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 242 ~~~~~~-~~D~v~~s~~K~l------~gp~gG~l~~~~~~~~~~ 278 (286)
...|.+ |+|+++++ ||.| +||..|++.+++++...+
T Consensus 241 l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~l 283 (429)
T PF02347_consen 241 LKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQL 283 (429)
T ss_dssp C--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS
T ss_pred cCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhC
Confidence 445545 79999777 7755 666669999999977544
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-09 Score=97.91 Aligned_cols=197 Identities=13% Similarity=0.124 Sum_probs=112.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh---c-
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL---L- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~---~- 133 (286)
-+|++.+++.+.+.+... . +. ....+... ++.+.+.++++.+. ..+++||+.++.+++... .
T Consensus 57 ~~p~v~~a~~~~~~~~~~--~-~~--~~~~~~~~----~l~~~l~~~~~~~~-----~~~~~sGseA~e~a~klar~~~~ 122 (403)
T PRK05093 57 CHPALVKALKEQGEKLWH--I-SN--VFTNEPAL----RLAKKLIDATFAER-----VFFANSGAEANEAAFKLARRYAC 122 (403)
T ss_pred CCHHHHHHHHHHHHhcCc--c-cC--ccCCHHHH----HHHHHHHhhCCCCE-----EEEeCchHHHHHHHHHHHHHHHh
Confidence 488999999888765221 1 11 11112222 35577777665432 355566766887666643 1
Q ss_pred ----CCCCeEEeccCCCCcccCccccc-----cccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 023191 134 ----KPHDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS 204 (286)
Q Consensus 134 ----~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~ 204 (286)
...+.|+..+..|.+...-...+ +..+.......+..+ + ..|++++++.+.+ ++++|+++|.
T Consensus 123 ~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~d~~~l~~~l~~-~~aaiiiep~ 193 (403)
T PRK05093 123 DRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHV--P------FNDLAAVKAVIDD-HTCAVVVEPI 193 (403)
T ss_pred hcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEe--C------CCCHHHHHHHhcC-CeEEEEEecc
Confidence 23356777775555432111000 000000000011111 1 1288999998876 8999999865
Q ss_pred C-CCC-c----cCHHHHHHHHHhcCCEEEEeccccccccccCCC-CC-CCC-cceEEEeCCCCCCC-CCCceEEEEecch
Q 023191 205 A-YAR-L----YDYERIRKVCNKQKAIMLADMAHISGLVAAGVI-PS-PFE-YADVVTTTTHKSLR-GPRGAMIFFRKGV 274 (286)
Q Consensus 205 n-~g~-~----~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-~~-~~~-~~D~v~~s~~K~l~-gp~gG~l~~~~~~ 274 (286)
| ++. . ..+++|.++|++||+++|+|++|. |....+.. .. ... ..|+ .+++|.++ |.+.|++++++++
T Consensus 194 ~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi--~s~sK~l~~G~rig~vv~~~~i 270 (403)
T PRK05093 194 QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRTGDLFAYMHYGVTPDI--LTSAKALGGGFPIGAMLTTAEI 270 (403)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCccchhhhhcCCCCCE--EEecccccCCcceEEEEEcHHH
Confidence 5 432 2 238999999999999999999976 44222211 10 011 1454 46789884 4456999999988
Q ss_pred hhhhcc
Q 023191 275 KEINKQ 280 (286)
Q Consensus 275 ~~~~~~ 280 (286)
.+..++
T Consensus 271 ~~~l~~ 276 (403)
T PRK05093 271 ASHFKV 276 (403)
T ss_pred HhhcCC
Confidence 777654
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.3e-09 Score=95.10 Aligned_cols=210 Identities=14% Similarity=0.129 Sum_probs=119.1
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.+++..+.. -.+|++.+++.+.+.+... . .. ....+++.++.+++.+.++.+. -+++.+|
T Consensus 30 ~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~--~-~~------~~~~~~~~~la~~l~~~~~~~~-----~~~~~sG 95 (377)
T PRK02936 30 TYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWH--V-SN------LFTNSLQEEVASLLAENSAGDL-----VFFCNSG 95 (377)
T ss_pred EEEECCcchhhccCCCCCHHHHHHHHHHHHhccc--c-cc------ccCCHHHHHHHHHHHhcCCCCE-----EEEeCCc
Confidence 3466655542 2579999999988865221 1 11 1123566666777777665432 2444566
Q ss_pred hHHHHHHHHHh-cCCC-CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCC-CC--CCCHHHHHHHhhhcCC
Q 023191 122 SPSNFQVYTAL-LKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES-TG--YIDYDQLEKSATLFRP 196 (286)
Q Consensus 122 ~~a~~~~l~a~-~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~--~~d~e~l~~~i~~~~t 196 (286)
+.++.+++... ..+| ++|++.+..|.+........-... .... ...+ ..++ .+ ..|++++++.+.+ ++
T Consensus 96 ~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~-~~~~---~~~~--~~~~~~~~~~~d~~~l~~~~~~-~~ 168 (377)
T PRK02936 96 AEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQE-KIKE---GFGP--LLPGFTHVPFNDIKALKEVMNE-EV 168 (377)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCc-cccc---cCCC--CCCCceEeCCCCHHHHHHhccC-Ce
Confidence 66888777643 2344 678888766654421111000000 0000 0001 0000 00 1278999999976 88
Q ss_pred cEEEEc-CCCC-CC----ccCHHHHHHHHHhcCCEEEEeccccccccccCCC-CC-CCC-cceEEEeCCCCCCCC-CCce
Q 023191 197 KLIVAG-ASAY-AR----LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI-PS-PFE-YADVVTTTTHKSLRG-PRGA 266 (286)
Q Consensus 197 k~v~i~-~~n~-g~----~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-~~-~~~-~~D~v~~s~~K~l~g-p~gG 266 (286)
++|++. ..+. |. ...+++|.++|++||+++|+|++|. |....+.. .. .+. ..|++ +++|.+++ .+.|
T Consensus 169 ~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~ig 245 (377)
T PRK02936 169 AAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQT-GIGRTGTLFAYEQFGLDPDIV--TVAKGLGNGIPVG 245 (377)
T ss_pred EEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhhCCCCcEE--EEcccccCCCccE
Confidence 999986 3332 22 2349999999999999999999984 43221110 00 011 14654 57999863 3569
Q ss_pred EEEEecchhhhhcc
Q 023191 267 MIFFRKGVKEINKQ 280 (286)
Q Consensus 267 ~l~~~~~~~~~~~~ 280 (286)
++++++++.+....
T Consensus 246 ~v~~~~~~~~~~~~ 259 (377)
T PRK02936 246 AMIGKKELGTAFGP 259 (377)
T ss_pred EEEEcHHHHhhccC
Confidence 99999888777654
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.9e-10 Score=97.75 Aligned_cols=172 Identities=19% Similarity=0.180 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh---cCCC----------CeEEecc-CCCCcccCc
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---LKPH----------DRIMALD-LPHGGHLSH 152 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~---~~~G----------d~Vl~~~-~~~~~~~~~ 152 (286)
+....+|..+...+.+..|.+.+- +.|.. .|.+ +++.++.+- .-|+ +-|+..+ -.|.|...
T Consensus 137 PvF~lmE~~vl~km~~ivGw~~~~--DgIf~-pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~k- 212 (510)
T KOG0629|consen 137 PVFVLMEEEVLAKMREIVGWEEGG--DGIFA-PGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKK- 212 (510)
T ss_pred ceEEeehHHHHHHHHHHhCCCCCC--Cceec-CCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHH-
Confidence 334456667778888889997642 24554 5555 666544433 1122 3344332 22222222
Q ss_pred cccccccccccce---eeeEEEecccCCCCCCCCHHHHHHHhhhcC-----CcEEEEc-CCC-CCCccCHHHHHHHHHhc
Q 023191 153 GYQTDTKKISAVS---IFFETMPYRLNESTGYIDYDQLEKSATLFR-----PKLIVAG-ASA-YARLYDYERIRKVCNKQ 222 (286)
Q Consensus 153 ~~~~~~~~~~~~g---~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~-----tk~v~i~-~~n-~g~~~~l~~I~~ia~~~ 222 (286)
.+.+.| -.++.++ .+ +.+.+++++||+.|...+ |..|-.+ .+. .|...|++.|+++|++|
T Consensus 213 -------aAa~lg~gtd~c~~v~--t~-e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~ 282 (510)
T KOG0629|consen 213 -------AAAFLGLGTDHCIKVK--TD-ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKH 282 (510)
T ss_pred -------HHHHhccCCceeEEec--cc-ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhc
Confidence 333444 2344453 45 678999999999986533 3333333 333 67889999999999999
Q ss_pred CCEEEEeccccccccccCCCCCCCC---cceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 223 KAIMLADMAHISGLVAAGVIPSPFE---YADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 223 ~~~vivD~a~~~g~~~~~~~~~~~~---~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
++|+++|+|++.|......+...+. -+|.+.+++||+++.|-- +.+++|.+
T Consensus 283 ~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~ 337 (510)
T KOG0629|consen 283 KLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREE 337 (510)
T ss_pred CEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHH
Confidence 9999999998877776544444443 489999999999999866 77666654
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=94.79 Aligned_cols=171 Identities=13% Similarity=0.182 Sum_probs=118.2
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh---c-C-CC---CeEEeccCCCCcccCccccccc
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---L-K-PH---DRIMALDLPHGGHLSHGYQTDT 158 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~---~-~-~G---d~Vl~~~~~~~~~~~~~~~~~~ 158 (286)
+...+++.++..+++++|+.+.+. .=..|+|++ +.++....- . . .| .+++++...|.++ .
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~~~~~---~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~--------e 184 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNAPSDS---CGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAF--------E 184 (491)
T ss_pred chhHHHHHHHHHHHHHHhcCCccc---cCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHH--------H
Confidence 346788999999999999997654 344467777 533232222 1 1 11 2344444333322 2
Q ss_pred cccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC--CCCccCHHHHHHHHHh-cCCEEEEecccccc
Q 023191 159 KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA--YARLYDYERIRKVCNK-QKAIMLADMAHISG 235 (286)
Q Consensus 159 ~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n--~g~~~~l~~I~~ia~~-~~~~vivD~a~~~g 235 (286)
..+...+.+++.+| +++.++.+|+..+.+.+++ +|.+++...+| +|...++++|.++.-| +++.+++|++- .|
T Consensus 185 K~a~yf~v~l~~V~--~~~~~~~~D~~k~~~~i~e-Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~-Gg 260 (491)
T KOG1383|consen 185 KAARYFEVELREVP--LDEGDYRVDPGKVVRMIDE-NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACL-GG 260 (491)
T ss_pred HHHhhEEEEEEeee--ccccceEecHHHHHHHhcc-ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccC-cc
Confidence 23445666677676 4556799999999999999 99988887566 5688999999999988 99999999993 34
Q ss_pred ccc--c--CCCCCCC--CcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 236 LVA--A--GVIPSPF--EYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 236 ~~~--~--~~~~~~~--~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
.+. . ...++.| .++-.+..++||.-..|.| |+++.+++
T Consensus 261 Fi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k 305 (491)
T KOG1383|consen 261 FINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNK 305 (491)
T ss_pred ccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEccc
Confidence 333 1 1222333 2678999999998889999 88888753
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=94.94 Aligned_cols=175 Identities=17% Similarity=0.133 Sum_probs=125.4
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH---HHHHHHHHhc-CCC----CeEEeccCCCCcccCcccccccc
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP---SNFQVYTALL-KPH----DRIMALDLPHGGHLSHGYQTDTK 159 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~---a~~~~l~a~~-~~G----d~Vl~~~~~~~~~~~~~~~~~~~ 159 (286)
+++.++-..+.+++..+.|.|. ...+..||+. +-+.++++.+ ..| ...+++-..|+.+..
T Consensus 578 qGY~~lf~~Le~~Lc~iTG~D~----~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA-------- 645 (1001)
T KOG2040|consen 578 QGYQQLFTELEKDLCEITGFDS----FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA-------- 645 (1001)
T ss_pred hhHHHHHHHHHHHhheeecccc----eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh--------
Confidence 5566777777799999999887 4688889988 4444777774 333 346777888888744
Q ss_pred ccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCCCC-CccCHHHHHHHHHhcCCEEEEecccccc
Q 023191 160 KISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASAYA-RLYDYERIRKVCNKQKAIMLADMAHISG 235 (286)
Q Consensus 160 ~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n~g-~~~~l~~I~~ia~~~~~~vivD~a~~~g 235 (286)
.+.++|.++ +|+..+ .++.+|+.+|++...++ +..++.++ ||.+| ....++++.++.|+||--|..|+|.--.
T Consensus 646 SA~Magmkv--vpV~~~-~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMNA 722 (1001)
T KOG2040|consen 646 SAAMAGMKV--VPVGCD-ANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMNA 722 (1001)
T ss_pred hHHhcCCEE--EEeecc-CCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCccc
Confidence 456777555 555666 67899999999988764 45677788 66678 4567999999999999999999995433
Q ss_pred ccccCCCCCCCCcceEEEeCCCCCCCC------CCceEEEEecchhhhhc
Q 023191 236 LVAAGVIPSPFEYADVVTTTTHKSLRG------PRGAMIFFRKGVKEINK 279 (286)
Q Consensus 236 ~~~~~~~~~~~~~~D~v~~s~~K~l~g------p~gG~l~~~~~~~~~~~ 279 (286)
.+. +-..+.-|+|+.-.++||+|+- |..|-|.+++.+.+.+-
T Consensus 723 qVG--lc~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP 770 (1001)
T KOG2040|consen 723 QVG--LCRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP 770 (1001)
T ss_pred eec--ccCCccccccceeecccceeeecCCCCCCCCCccchhhhccccCC
Confidence 332 2222222699999999999833 33366877777766554
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-08 Score=89.51 Aligned_cols=207 Identities=17% Similarity=0.129 Sum_probs=128.7
Q ss_pred cCceecCCCCC-----CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSENF-----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~~-----~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.|++..+-.+ -+|.|.+|+.+.+.+...-|.|. ++|-++.+.+.+++..- + .|.+++.
T Consensus 54 ~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~Pt-----------e~Ei~~Aell~~~~p~~-e----~vrfvnS 117 (432)
T COG0001 54 EYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGAPT-----------ELEVELAELLIERVPSI-E----KVRFVNS 117 (432)
T ss_pred EeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHhcCcc-c----EEEEecc
Confidence 34555544444 27889999999988754323222 44555778888888762 2 2777665
Q ss_pred hH-HHHHHHHHh--cCCCCeEEeccCCCCcccCcccccccccc------ccce------eeeEEEecccCCCCCCCCHHH
Q 023191 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKI------SAVS------IFFETMPYRLNESTGYIDYDQ 186 (286)
Q Consensus 122 ~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~------~~~g------~~~~~v~~~~~~~~~~~d~e~ 186 (286)
.| |.+.+++.- ....|+|+.++-.|.++......-...++ ...| .....+| .+ |++.
T Consensus 118 GTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~--yN------D~~a 189 (432)
T COG0001 118 GTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLP--YN------DLEA 189 (432)
T ss_pred hhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEec--CC------CHHH
Confidence 55 887666544 55679999999888887643322111111 1111 0112222 22 8999
Q ss_pred HHHHhhhc--CCcEEEEc--CCCCCCcc----CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEEeCCC
Q 023191 187 LEKSATLF--RPKLIVAG--ASAYARLY----DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVTTTTH 257 (286)
Q Consensus 187 l~~~i~~~--~tk~v~i~--~~n~g~~~----~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s~~ 257 (286)
+++++.+. +..+|++. ..|.|.+. -++.|.++|++||+++|.|+....--+..+-.+..+. ..|+ +++.
T Consensus 190 l~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDl--ttlG 267 (432)
T COG0001 190 LEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDL--TTLG 267 (432)
T ss_pred HHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcch--hhhh
Confidence 99999874 57788886 66666433 3889999999999999999995421111111111111 1454 4578
Q ss_pred CCCCCCCc-eEEEEecchhhhhc
Q 023191 258 KSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 258 K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
|.++|.-. |++.++.++.+...
T Consensus 268 KiIGGGlP~ga~gGr~eiM~~~~ 290 (432)
T COG0001 268 KIIGGGLPIGAFGGRAEIMEQLA 290 (432)
T ss_pred hhhcCCcceeeeccHHHHHhhhC
Confidence 98877655 99999998877544
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.6e-09 Score=94.71 Aligned_cols=201 Identities=16% Similarity=0.186 Sum_probs=112.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-.|++.+|+.+.+......+ . .+. .+.. .++.+.++++++.+ .+++ +||+.|+..+++...
T Consensus 56 ~~p~v~~A~~~~~~~~~~~~---~-~~~-~~~~----~~la~~l~~~~~~~------~v~~~~sGseA~e~Alk~ar~~~ 120 (406)
T PRK12381 56 AHPALREALNEQASKFWHTG---N-GYT-NEPV----LRLAKKLIDATFAD------RVFFCNSGAEANEAALKLARKYA 120 (406)
T ss_pred CCHHHHHHHHHHHhhccccc---C-ccC-CHHH----HHHHHHHHhhCCCC------eEEEcCCcHHHHHHHHHHHHHHH
Confidence 37899999988876422111 1 011 1222 23557777776543 2555 455558876666531
Q ss_pred -----CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CC
Q 023191 134 -----KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YA 207 (286)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g 207 (286)
.++.+|+.++..|.+...-...+-... .... .+...+-.+. .....|++++++.+.+ ++++|++.|.+ .|
T Consensus 121 ~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~-~~~~-~~~~~~~~~~-~~~~~d~~~l~~~l~~-~~aaviiEPv~~~g 196 (406)
T PRK12381 121 HDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQP-KYSQ-DFAPLPPDIR-HAAYNDLNSASALIDD-QTCAVIVEPIQGEG 196 (406)
T ss_pred hhcCCCCCCeEEEECCCcCCcchhHHhhcCCc-cccc-CCCCCCCCee-EeCCCCHHHHHHhccC-CeeEEEEeCCcCCC
Confidence 245788888877766532111000000 0000 0000000000 0112488999999976 88999997555 33
Q ss_pred -----CccCHHHHHHHHHhcCCEEEEeccccccccccCC-CCC-CCC-cceEEEeCCCCCCC-CCCceEEEEecchhhhh
Q 023191 208 -----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV-IPS-PFE-YADVVTTTTHKSLR-GPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 208 -----~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~-~~~-~~D~v~~s~~K~l~-gp~gG~l~~~~~~~~~~ 278 (286)
....+++|.++|++||+++|+|++| .|....+. ... .+. ..|+ .++.|.++ |.+.|++++++++.+..
T Consensus 197 g~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG~gr~G~~~~~~~~~v~pDi--~t~sK~l~gG~~ig~~~~~~~~~~~~ 273 (406)
T PRK12381 197 GVIPADKAFLQGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDV--LTTAKALGGGFPIGAMLTTEKCASVM 273 (406)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hCCCCCcchhhhHhhCCCCCE--EEehhhhhCCCceEEEEEcHHHHhhc
Confidence 2345899999999999999999998 44322121 110 011 2565 47789984 44449999998887766
Q ss_pred cc
Q 023191 279 KQ 280 (286)
Q Consensus 279 ~~ 280 (286)
.+
T Consensus 274 ~~ 275 (406)
T PRK12381 274 TV 275 (406)
T ss_pred CC
Confidence 54
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-08 Score=90.80 Aligned_cols=198 Identities=14% Similarity=0.150 Sum_probs=109.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhc----
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL---- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~---- 133 (286)
..|++.+++.+.+.. +... .. .+ ..+...+ +.+.++++++.+. -+++.||+.++..++....
T Consensus 54 ~~p~v~~a~~~~~~~-~~~~--~~-~~-~~~~~~~----l~~~l~~~~~~~~-----~~~~~SGs~A~e~ai~~a~~~~~ 119 (401)
T TIGR01885 54 CHPKIVKALTEQAQK-LTLS--SR-AF-YNDVFGE----FAEYVTKLFGYDK-----VLPMNTGAEAVETAIKLARKWGY 119 (401)
T ss_pred CCHHHHHHHHHHHHh-cccc--cc-cc-CCHHHHH----HHHHHHhhcCCCE-----EEEeCccHHHHHHHHHHHHHHhh
Confidence 379999999887754 2111 11 11 1222333 4477777777532 3666777778887776531
Q ss_pred -----CC-CCeEEeccCCCCcc-cCccccccccccc-cce---eeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEE
Q 023191 134 -----KP-HDRIMALDLPHGGH-LSHGYQTDTKKIS-AVS---IFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIV 200 (286)
Q Consensus 134 -----~~-Gd~Vl~~~~~~~~~-~~~~~~~~~~~~~-~~g---~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~ 200 (286)
.+ .+.|+.....|.+. ............. ..+ ..+..+ + ..|++++++.+++. +..+|+
T Consensus 120 ~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~d~~~le~~l~~~~~~~~avi 191 (401)
T TIGR01885 120 KVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKI--P------YNNLEALEEALEDHGPNVCAFI 191 (401)
T ss_pred hhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEe--C------CCCHHHHHHHHHhcCCCEEEEE
Confidence 23 45666666665543 1111000000000 000 001111 1 12789999988632 456777
Q ss_pred Ec-CC-CCCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCC-CCC-CC-cceEEEeCCCCCCCCC--CceEEE
Q 023191 201 AG-AS-AYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVI-PSP-FE-YADVVTTTTHKSLRGP--RGAMIF 269 (286)
Q Consensus 201 i~-~~-n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-~~~-~~-~~D~v~~s~~K~l~gp--~gG~l~ 269 (286)
+. .. +.|...+ +++|.++|++||+++|+|++|. |.-..+.. ... .. ..|+++++ |.++|. +-|+++
T Consensus 192 ~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig~v~ 268 (401)
T TIGR01885 192 VEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT-GLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYPVSAVL 268 (401)
T ss_pred EeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhhHHhhcCCCCCEEEee--ccccCCCCCcEEEE
Confidence 76 22 2565554 9999999999999999999974 42211110 000 01 26777654 998663 347888
Q ss_pred Eecchhhhhcc
Q 023191 270 FRKGVKEINKQ 280 (286)
Q Consensus 270 ~~~~~~~~~~~ 280 (286)
.++++.+..++
T Consensus 269 ~~~~i~~~~~~ 279 (401)
T TIGR01885 269 ADDDVMLTIKP 279 (401)
T ss_pred EcHHHHhhccC
Confidence 88887766553
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-08 Score=91.44 Aligned_cols=191 Identities=15% Similarity=0.133 Sum_probs=107.1
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhc-----
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALL----- 133 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~----- 133 (286)
.|++.+++.+.+.... .++. ....+.+.++.+++.+..+.+ . -+++.||+.|+.+++....
T Consensus 54 ~p~v~~a~~~q~~~~~-~~~~--------~~~~~~~~~la~~l~~~~~~~--~---v~f~~SGseA~e~Aik~ar~~~~~ 119 (395)
T PRK03715 54 NPGMVEALAAQAEKLI-NPSP--------AFYNEPMAKLAGLLTQHSCFD--K---VFFANSGAEANEGAIKLARKWGRK 119 (395)
T ss_pred CHHHHHHHHHHHHhcc-cccc--------cccCHHHHHHHHHHhhccCCC--E---EEEeCCcHHHHHHHHHHHHHHhhc
Confidence 6889999888765421 1111 111244555667776654332 2 2444555558887776553
Q ss_pred -CCC-CeEEeccCCCCcccCccccccccccccceee-eE--EEec--ccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-
Q 023191 134 -KPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIF-FE--TMPY--RLNESTGYIDYDQLEKSATLFRPKLIVAGASA- 205 (286)
Q Consensus 134 -~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~--~v~~--~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n- 205 (286)
++| .+|+..+..|.+...-.. .+.+.. .+ ..|. ... .....|++++++.+.+ ++++|++.|.+
T Consensus 120 ~~~~r~~ii~~~~~yHG~t~~~~-------~~s~~~~~~~~~~~~~~~~~-~~~~~d~~~l~~~l~~-~~aavi~Epv~~ 190 (395)
T PRK03715 120 HKNGAYEIITFDHSFHGRTLATM-------SASGKPGWDTIFAPQVPGFP-KAELNDIASVEKLITD-KTVAVMLEPVQG 190 (395)
T ss_pred cCCCCcEEEEECCCcCCChHHHH-------hhcCCcccccCCCCCCCCce-eeCCchHHHHHHHcCC-CceEEEEeCCcC
Confidence 123 567777755544321111 011100 00 0000 000 0012478999998876 78888887443
Q ss_pred -CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCC----CCCCCCcceEEEeCCCCCCCCCC-ceEEEEecchh
Q 023191 206 -YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV----IPSPFEYADVVTTTTHKSLRGPR-GAMIFFRKGVK 275 (286)
Q Consensus 206 -~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~----~~~~~~~~D~v~~s~~K~l~gp~-gG~l~~~~~~~ 275 (286)
.|...+ +++|.++|++||+++|+|++|. |.-..+. ....+ ..|++++ .|.++|.. .|++++++++.
T Consensus 191 ~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~~a~~~~gv-~PDi~t~--gK~lg~G~p~~av~~~~~i~ 266 (395)
T PRK03715 191 EGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTLFAYELSGI-EPDIMTL--GKGIGGGVPLAALLAKAEVA 266 (395)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCCCcchhhHhhcCC-CCceeee--hhhhhCCcceEEEEEccccc
Confidence 344444 9999999999999999999987 4211111 11111 2687655 59997743 37778888775
Q ss_pred h
Q 023191 276 E 276 (286)
Q Consensus 276 ~ 276 (286)
.
T Consensus 267 ~ 267 (395)
T PRK03715 267 V 267 (395)
T ss_pred c
Confidence 3
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.8e-08 Score=90.88 Aligned_cols=195 Identities=17% Similarity=0.163 Sum_probs=107.5
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcC----
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLK---- 134 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~---- 134 (286)
.|.+.+++.+.+.. +. +... .+. .+...+ +.+.++++++.+. -++.+||+.++..++.....
T Consensus 93 ~p~v~~ai~~ql~~-~~--~~~~-~~~-~~~~~~----la~~L~~~~~~~~-----~~f~~SGseA~e~AlklAr~~~~~ 158 (474)
T PLN02624 93 HPKIIKALTEQAEK-LT--LSSR-AFY-NDKFPE----FAEYLTSMFGYDM-----VLPMNTGAEGVETAIKLARKWGYE 158 (474)
T ss_pred CHHHHHHHHHHHHh-cC--Cccc-ccC-CHHHHH----HHHHHHhhcCCCe-----EEEeCChHHHHHHHHHHHHHHHHh
Confidence 89999999888765 21 1111 111 222233 4577777776542 35556677677766642211
Q ss_pred -----CCC-eEEeccCCCCcccCccccc-----cccc--cccceeeeEEEecccCCCCCCCCHHHHHHHhhh--cCCcEE
Q 023191 135 -----PHD-RIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLI 199 (286)
Q Consensus 135 -----~Gd-~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v 199 (286)
++. .|+.....|.+...-...+ .... ....+ +..++ . .|++.+++.+.. .++++|
T Consensus 159 ~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~--~~~~~--~------~d~~~l~~~l~~~~~~iaai 228 (474)
T PLN02624 159 KKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPG--HLKVD--F------GDLDALEKIFEEDGDRIAAF 228 (474)
T ss_pred hcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCC--ceEeC--C------CCHHHHHHHHHhCCCCEEEE
Confidence 133 4665554444331100000 0000 00000 11111 1 278899988864 257788
Q ss_pred EEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccC-CCCCCCC--cceEEEeCCCCCCCCC--CceEE
Q 023191 200 VAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSPFE--YADVVTTTTHKSLRGP--RGAMI 268 (286)
Q Consensus 200 ~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~~~~--~~D~v~~s~~K~l~gp--~gG~l 268 (286)
++.+.+ .|...| +++|.++|++||+++|+|++|. |.-..+ ....... ..|++++ .|.++++ +.|++
T Consensus 229 iiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G~GrtG~~~a~~~~~i~pDiv~l--sK~lggG~~pigav 305 (474)
T PLN02624 229 LFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-GLARTGKMLACDWEEVRPDVVIL--GKALGGGVIPVSAV 305 (474)
T ss_pred EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CcCcCcchhhHHhcCCCCCEEEe--cccccCCCCcceee
Confidence 887333 555555 9999999999999999999986 321111 1110001 2677775 5988765 44888
Q ss_pred EEecchhhhhcc
Q 023191 269 FFRKGVKEINKQ 280 (286)
Q Consensus 269 ~~~~~~~~~~~~ 280 (286)
++++++.+..++
T Consensus 306 ~~~~~i~~~~~~ 317 (474)
T PLN02624 306 LADKDVMLCIKP 317 (474)
T ss_pred eecHHHHhHhcc
Confidence 888877665543
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=100.08 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=110.4
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-c--CCCCeEEeccCCCCcccCcccccccccccc
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-L--KPHDRIMALDLPHGGHLSHGYQTDTKKISA 163 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~-~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (286)
++.-+.--..+..++++.|.+.. |..+..+++ +..+++++. . +++++|++++..|+.+...... -+..
T Consensus 105 QG~Le~l~e~Qt~i~eLtGm~~a----NaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t----~a~~ 176 (939)
T TIGR00461 105 QGRLEALLNFQTVVSDLTGLPVA----NASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHT----RAKP 176 (939)
T ss_pred hHHHHHHHHHHHHHHHHHCCChh----hhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHH----HHHh
Confidence 44444444578999999999874 456666666 333344453 3 3458999999888776533221 1234
Q ss_pred ceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCC
Q 023191 164 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 242 (286)
Q Consensus 164 ~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~ 242 (286)
.|.+++.+ |+++|++.+ ++.++++..+| +|.+.++++|++++|++|.+++++.-..+ ..+.
T Consensus 177 ~g~~v~~~-----------~~~~l~~~~---~~~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~a----l~ll 238 (939)
T TIGR00461 177 FGIEVIVV-----------DCSDIKKAV---DVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMA----LTLL 238 (939)
T ss_pred cCcEEEEE-----------cHHHHhhcC---CEEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHH----hCCc
Confidence 45444333 445565554 46778887556 78888999999999999999999655332 2333
Q ss_pred CCCCC-cceEEEeCCCCC-----CCCCCceEEEEecchhhhh
Q 023191 243 PSPFE-YADVVTTTTHKS-----LRGPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 243 ~~~~~-~~D~v~~s~~K~-----l~gp~gG~l~~~~~~~~~~ 278 (286)
..|-+ |+|+++++.+++ |+||..|++.+++++...+
T Consensus 239 ~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~l 280 (939)
T TIGR00461 239 TPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKM 280 (939)
T ss_pred CCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhC
Confidence 33433 699998888774 4688889999999876543
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-08 Score=88.28 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=111.5
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-cC--CCCeEEeccCCCCcccCccccccccccccceeeeEEE
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LK--PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 171 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~-~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 171 (286)
+.+..++++.|.+.. |--..-+++ +..+++++. +. +.++++++...|+.+...... -++-.|.++++.
T Consensus 124 efQtlv~dLTGm~VA----NASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~T----ra~~~g~~i~~~ 195 (450)
T COG0403 124 EFQTLVADLTGLDVA----NASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRT----RAEGLGIEIEVV 195 (450)
T ss_pred HHHHHHHHHhCCCcc----cchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHh----hcccCceEEEEe
Confidence 467889999999873 455556666 444444544 33 368999999888877653321 122334434333
Q ss_pred ecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CC-CccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-c
Q 023191 172 PYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YA-RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-Y 248 (286)
Q Consensus 172 ~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g-~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~ 248 (286)
+ .+ |++++++. .+..+.++++..+| +| ...++++|.+.+|+++.++++= ...+...+...|.+ |
T Consensus 196 ~--~~------d~~~l~~~-~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~----aDplaL~LL~pPGe~G 262 (450)
T COG0403 196 D--AD------DLDDLESA-DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVA----ADPLALGLLKPPGEFG 262 (450)
T ss_pred c--cc------hhhhhhhc-cccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEE----echhHhhccCCccccC
Confidence 2 22 78888887 44478899998777 77 5667999999999999987763 33444555555655 7
Q ss_pred ceEEEeCCCC-----CCCCCCceEEEEecchh
Q 023191 249 ADVVTTTTHK-----SLRGPRGAMIFFRKGVK 275 (286)
Q Consensus 249 ~D~v~~s~~K-----~l~gp~gG~l~~~~~~~ 275 (286)
+|+++++++- +|+||..|++.+++++.
T Consensus 263 ADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~ 294 (450)
T COG0403 263 ADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFK 294 (450)
T ss_pred CceEEecCcccCCCcCCCCcceeeeeEhHhHh
Confidence 9999999985 67889889999999874
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.5e-08 Score=85.34 Aligned_cols=214 Identities=19% Similarity=0.111 Sum_probs=111.5
Q ss_pred HcCceecCCCCCCCHHHHHHhccccc---cCC-CCCCCCCccc-CCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC
Q 023191 46 WKGLELIPSENFTSVSVMQAVGSVMT---NKY-SEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120 (286)
Q Consensus 46 ~~~i~L~~~e~~~~~~v~~a~~~~l~---~~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s 120 (286)
.+.++|+-.-..++++=.+--...+. ..+ ...-.+.+.| ++-+++++++ +.+++++|++++ +|++..
T Consensus 22 a~~L~LdmtRGKPs~eQLdLS~~lL~~~~~~~~~~dG~D~RNY~G~l~Gipe~r----~l~a~llgv~~~----~viv~g 93 (425)
T PF12897_consen 22 AKGLKLDMTRGKPSPEQLDLSNPLLDLPGSSDYLADGTDCRNYPGGLDGIPEAR----ELFAELLGVPPE----NVIVGG 93 (425)
T ss_dssp HTT--EES---S--HHHHHGGGGGGGSSTTCCBECTTEBTTSS-S-SS--HHHH----HHHHHHHTS-GG----GEEE-S
T ss_pred HcCCCcccCCCCCCHHHHhhhHHHhcCCCCccccCCCccccCCCCccCChHHHH----HHHHHHhCCCHH----HEEEec
Confidence 35677777777666654443322221 111 1122346788 8889998777 888889999986 488877
Q ss_pred ChHHHH-H--HHHHhc---C---------CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHH
Q 023191 121 GSPSNF-Q--VYTALL---K---------PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 185 (286)
Q Consensus 121 G~~a~~-~--~l~a~~---~---------~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e 185 (286)
.++.++ . +..+++ . +.=+.|++.|.|.-|+. .++..|.+.+.||+. ...+|+|
T Consensus 94 NSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFa--------i~E~~Giemi~VpM~----~dGPDmD 161 (425)
T PF12897_consen 94 NSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFA--------ITEHFGIEMIPVPMT----EDGPDMD 161 (425)
T ss_dssp S-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHH--------HHHHCT-EEEEEEEE----TTEE-HH
T ss_pred cchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHH--------HHHhhCcEEEecCCC----CCCCCHH
Confidence 777332 1 222321 1 12357888866666665 445677666666644 2368999
Q ss_pred HHHHHhhh-cCCcEEEE-c-CCC-CCCccCHHHHHHHH----HhcCCEEEEeccccccccccCCCCCC-C----------
Q 023191 186 QLEKSATL-FRPKLIVA-G-ASA-YARLYDYERIRKVC----NKQKAIMLADMAHISGLVAAGVIPSP-F---------- 246 (286)
Q Consensus 186 ~l~~~i~~-~~tk~v~i-~-~~n-~g~~~~l~~I~~ia----~~~~~~vivD~a~~~g~~~~~~~~~~-~---------- 246 (286)
.+++++.+ ...|.|+. . ++| +|....-+.+.++| ...+.-+++|.|++...+..+..... +
T Consensus 162 ~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AG 241 (425)
T PF12897_consen 162 MVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAG 241 (425)
T ss_dssp HHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT
T ss_pred HHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcC
Confidence 99999854 35688876 3 888 77776655555555 35699999999999887743221111 1
Q ss_pred -CcceEEEeCCCC-CCCCCCceEEEEecchhhhhc
Q 023191 247 -EYADVVTTTTHK-SLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 247 -~~~D~v~~s~~K-~l~gp~gG~l~~~~~~~~~~~ 279 (286)
...-+++.|++| +|.|-.-+++..+.+-.++.+
T Consensus 242 npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~ 276 (425)
T PF12897_consen 242 NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIK 276 (425)
T ss_dssp -TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHH
T ss_pred CCCeEEEEecccccccCCcceeeeecCHHHHHHHH
Confidence 113377999999 454433388888876554444
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.3e-08 Score=90.64 Aligned_cols=208 Identities=15% Similarity=0.120 Sum_probs=120.7
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.+++..+.. ..+|.+.+++.+.+.+.. . ++...... ..+++++.+.+. ..+ .|.++++
T Consensus 51 ~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~--~-----~~~~~~~~----~~la~~L~~~~~-~~~----~v~~~~s 114 (426)
T PRK00062 51 EYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL--S-----FGAPTELE----VELAELVIELVP-SIE----MVRMVNS 114 (426)
T ss_pred EEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC--c-----CCCCCHHH----HHHHHHHHHhCC-CCC----EEEEecC
Confidence 4567665532 358999999988886521 1 11222222 335577766653 222 3666666
Q ss_pred hH-HHHHHHHHhc--CCCCeEEeccCCCCcccCcccccc-c----cccccceeeeE-----EEecccCCCCCCCCHHHHH
Q 023191 122 SP-SNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQTD-T----KKISAVSIFFE-----TMPYRLNESTGYIDYDQLE 188 (286)
Q Consensus 122 ~~-a~~~~l~a~~--~~Gd~Vl~~~~~~~~~~~~~~~~~-~----~~~~~~g~~~~-----~v~~~~~~~~~~~d~e~l~ 188 (286)
.+ |+..++.... ..+++|+..+..|.++........ . ......+...+ ..+++ ..|+++++
T Consensus 115 GseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~ 188 (426)
T PRK00062 115 GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP------YNDLEAVE 188 (426)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC------CCCHHHHH
Confidence 66 8887777653 346889999988877641111000 0 00000010000 01111 13789999
Q ss_pred HHhhh--cCCcEEEEc--CCCCCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCC-CCCCC-cceEEEeCCCC
Q 023191 189 KSATL--FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVI-PSPFE-YADVVTTTTHK 258 (286)
Q Consensus 189 ~~i~~--~~tk~v~i~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-~~~~~-~~D~v~~s~~K 258 (286)
+.+.+ .++++|++. +++.|...+ +++|.++|++||+++|+|++|. |....+.. ...+. ..|+ .+++|
T Consensus 189 ~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi--~~~gK 265 (426)
T PRK00062 189 ELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDL--TTLGK 265 (426)
T ss_pred HHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccCCccHHHHhCCCcch--Hhhhh
Confidence 88853 256778886 556676666 8999999999999999999986 44221111 00011 1454 46689
Q ss_pred CCCC-CCceEEEEecchhhhhc
Q 023191 259 SLRG-PRGAMIFFRKGVKEINK 279 (286)
Q Consensus 259 ~l~g-p~gG~l~~~~~~~~~~~ 279 (286)
.+++ .+.|++++++++.+..+
T Consensus 266 ~l~~G~p~ga~~~~~~i~~~~~ 287 (426)
T PRK00062 266 IIGGGLPVGAFGGRREIMEQLA 287 (426)
T ss_pred HhhCCCcceeeeEHHHHHHhhc
Confidence 8864 34577888888877665
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=85.30 Aligned_cols=191 Identities=12% Similarity=0.143 Sum_probs=108.2
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-cCCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPH 136 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~~~G 136 (286)
-.|++.+++.+.+.+... ... .+. .+ ....+.+++.++.+.+. -+...||+.|+.+++... ...|
T Consensus 41 ~~p~v~~ai~~ql~~~~~---~~~-~~~-~~----~~~~la~~l~~~~~~~~-----v~~~~SGseA~e~Alklar~~~g 106 (364)
T PRK04013 41 NHPEWVEEMSEQLEKLVV---AGP-MFE-HE----EKEEMLEELSKWVNYEY-----VYMGNSGTEAVEAALKFARLYTG 106 (364)
T ss_pred CCHHHHHHHHHHHHhcCC---ccC-CcC-CH----HHHHHHHHHHhhcCCCE-----EEEeCchHHHHHHHHHHHHHHhC
Confidence 368888888887765221 111 111 12 22334566777766543 244455666777666654 3345
Q ss_pred -CeEEeccCCCCcccCccccc-----cccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-C-C-
Q 023191 137 -DRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-Y-A- 207 (286)
Q Consensus 137 -d~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~-g- 207 (286)
++|+.++..|.+........ ++....-.-..+..+| ..|++.+++.+.+ ++++|++.|-. . |
T Consensus 107 r~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~--------~~d~~~l~~~i~~-~~aAvivEpi~g~gG~ 177 (364)
T PRK04013 107 RKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIP--------FNDVEAAKEAITK-ETAAVIFEPIQGEGGI 177 (364)
T ss_pred CCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEec--------CCCHHHHHHHhcC-CcEEEEEcCCcCCCCC
Confidence 89999887776653221110 0000000000011111 1278889998876 89999987433 2 3
Q ss_pred CccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC-CCC-cceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 208 RLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-PFE-YADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 208 ~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~-~~~-~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
...| +++|.++|++||+++|.|++|. |......... .+. ..|++++ .|.++|.-. |.++.+.++
T Consensus 178 ~~~~~~yl~~lr~lc~~~gillI~DEv~t-G~RtG~~~a~~~~gv~PDiv~~--gK~lggG~P~~a~~~~~~~ 247 (364)
T PRK04013 178 VPAKEEFVKTLRDLTEDVGALLIADEVQS-GLRTGKFLAIEHYKVEPDIVTM--GKGIGNGVPVSLTLTNFDV 247 (364)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEechhh-cCCCCchhHHHhcCCCCCEEEe--cccccCCceeEEEEecccc
Confidence 3344 9999999999999999999986 3322111110 011 2677766 898866433 777777664
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.7e-08 Score=86.81 Aligned_cols=197 Identities=12% Similarity=0.116 Sum_probs=107.5
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHh--cCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTAL--LKP 135 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~--~~~ 135 (286)
.|++++++.+.+.... .++. ....++++++.+.+. ...+. -+++ .||+.++..+++.. ..+
T Consensus 46 ~p~v~~a~~~~~~~~~--~~~~-------~~~~~~~~~la~~l~----~~~~~---~~~~~~SGseA~~~Al~~ar~~~~ 109 (375)
T PRK04260 46 HPQVQQALQKQAGLIW--HSPN-------LYLNSLQEEVAQKLI----GDKDY---LAFFCNSGAEANEAAIKIARKATG 109 (375)
T ss_pred CHHHHHHHHHHHHhcC--cccC-------ccCCHHHHHHHHHHh----cCcCC---EEEEcCccHHHHHHHHHHHHHhcC
Confidence 7889999988876422 1111 112234434444332 22221 2444 44555777666654 345
Q ss_pred CCeEEeccCCCCcccCccccc-cccc-cccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC--CCCccC
Q 023191 136 HDRIMALDLPHGGHLSHGYQT-DTKK-ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA--YARLYD 211 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~-~~~~-~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n--~g~~~~ 211 (286)
+++|++.+..|.+........ .... ....+..+..++ . ....|++++++.+.+ ++++|++.+.+ .|...+
T Consensus 110 ~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~dl~~l~~~l~~-~~a~vi~e~v~~~~G~~~~ 183 (375)
T PRK04260 110 KQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFS--Y---AIFNDLNSVKALVNK-NTAAVMLELVQGESGVLPA 183 (375)
T ss_pred CCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeE--E---eCCCCHHHHHHhcCC-CeEEEEECCeECCCCCcCC
Confidence 678888776655432111100 0000 000010000011 0 012489999998866 78888887333 444333
Q ss_pred ----HHHHHHHHHhcCCEEEEeccccccccccCC-CCC-CCC-cceEEEeCCCCCCC-CCCceEEEEecchhhhhcc
Q 023191 212 ----YERIRKVCNKQKAIMLADMAHISGLVAAGV-IPS-PFE-YADVVTTTTHKSLR-GPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 212 ----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~-~~~-~~D~v~~s~~K~l~-gp~gG~l~~~~~~~~~~~~ 280 (286)
+++|.++|+++|+++|+|++|. |....+. ... ... ..|++ +++|.|+ |-+.|++++++++.+...+
T Consensus 184 ~~~~l~~~~~l~~~~~~~~i~De~~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~ 257 (375)
T PRK04260 184 DKDFVKALADYCQETGILLIVDEVQT-GMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKSSLGGAFGY 257 (375)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCC
Confidence 8999999999999999999975 4322221 110 001 25644 7899996 3355999999887766554
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-07 Score=85.45 Aligned_cols=212 Identities=14% Similarity=0.026 Sum_probs=109.0
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh--cCCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKPH 136 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~--~~~G 136 (286)
++.+.+++.+.+.+.. +.....+ ... ...++.+++.+..+.+..+ ..++.+||+.++..++... ....
T Consensus 59 ~~~i~~a~~~~~~~~~---~~~~~~~-~~~----~~~~la~~l~~~~~~~~~~--~~~f~~sGsea~e~Alklar~~~~r 128 (425)
T PRK08088 59 HPKVVAAVEAQLKKLS---HTCFQVL-AYE----PYLELCEKMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAATKR 128 (425)
T ss_pred CHHHHHHHHHHHhhCC---Ccccccc-CCH----HHHHHHHHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHHhCC
Confidence 7888888888776521 1100000 011 1223557777766643321 2467788888555444433 2334
Q ss_pred CeEEeccCCCCcccCccccc------cccccccceeeeEEEecccCCCCCCC--CHHHHHHHhh----hcCCcEEEEcCC
Q 023191 137 DRIMALDLPHGGHLSHGYQT------DTKKISAVSIFFETMPYRLNESTGYI--DYDQLEKSAT----LFRPKLIVAGAS 204 (286)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~v~~~~~~~~~~~--d~e~l~~~i~----~~~tk~v~i~~~ 204 (286)
..|+..++.|.+...-.... +..+....-..+..++++.+..+... +++++++.+. ..+.++|++.|.
T Consensus 129 ~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi 208 (425)
T PRK08088 129 SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPV 208 (425)
T ss_pred CeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcc
Confidence 45666676666553211110 00000000000111222222111111 1556888775 235677887633
Q ss_pred C-C-CCcc----CHHHHHHHHHhcCCEEEEeccccccccccC-CCCCCCCcceEEEeCCCCCCCC-CCceEEEEecchhh
Q 023191 205 A-Y-ARLY----DYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSPFEYADVVTTTTHKSLRG-PRGAMIFFRKGVKE 276 (286)
Q Consensus 205 n-~-g~~~----~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~~~~~~D~v~~s~~K~l~g-p~gG~l~~~~~~~~ 276 (286)
. . |... .+++|.++|++||+++|+|+++. |....+ .......+.+.-+.+++|.+++ .+.|+++++.++.+
T Consensus 209 ~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~-g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~ 287 (425)
T PRK08088 209 QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT-GAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMD 287 (425)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCcchhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHh
Confidence 2 3 3333 38899999999999999999976 321111 1110001122225778998853 33499999988877
Q ss_pred hhccC
Q 023191 277 INKQG 281 (286)
Q Consensus 277 ~~~~~ 281 (286)
...+.
T Consensus 288 ~~~~~ 292 (425)
T PRK08088 288 AIAPG 292 (425)
T ss_pred hcCCC
Confidence 66543
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=84.33 Aligned_cols=207 Identities=12% Similarity=0.132 Sum_probs=117.5
Q ss_pred cCceecCCCCC-----CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSENF-----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~~-----~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.|++..|-.. .+|.+++++.+-+...+..+ . ....+...++.+.+.+..+ ..+ .|++.++
T Consensus 43 ~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~s---n------~~~~~~~~~la~~L~~~s~-~~d----~vff~NS 108 (404)
T COG4992 43 EYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVS---N------LFYNEPQAELAEKLVELSP-FAD----RVFFCNS 108 (404)
T ss_pred EeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcc---c------ccCChHHHHHHHHHHhhCc-ccc----EEEEcCC
Confidence 45666655332 48999999988665544211 1 1122334446678888776 333 3777665
Q ss_pred hH-HHHHHHHHh---cC-C-CCeEEeccCCCCcccCcc-----ccccccccc-cceeeeEEEecccCCCCCCCCHHHHHH
Q 023191 122 SP-SNFQVYTAL---LK-P-HDRIMALDLPHGGHLSHG-----YQTDTKKIS-AVSIFFETMPYRLNESTGYIDYDQLEK 189 (286)
Q Consensus 122 ~~-a~~~~l~a~---~~-~-Gd~Vl~~~~~~~~~~~~~-----~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~e~l~~ 189 (286)
.+ |+.+++..- .. | .-+|+.+...|.+..--. -+-|+.... +.. .++.+| . -|++++++
T Consensus 109 GaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~-g~~~vp--f------nDi~al~~ 179 (404)
T COG4992 109 GAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLP-GFRHVP--F------NDIEALEA 179 (404)
T ss_pred cHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCC-CceecC--C------CCHHHHHH
Confidence 55 888766544 22 2 236777765555432111 111221110 000 022222 1 28999999
Q ss_pred HhhhcCCcEEEEcCCC--CCC----ccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCCC
Q 023191 190 SATLFRPKLIVAGASA--YAR----LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLR 261 (286)
Q Consensus 190 ~i~~~~tk~v~i~~~n--~g~----~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l~ 261 (286)
++++ +|.+|++.|-. -|. ..-++++.++|++||+++|.|+.|..--....++..... ..|+++ .-|.++
T Consensus 180 ai~~-~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~t--laK~Lg 256 (404)
T COG4992 180 AIDE-DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILT--LAKALG 256 (404)
T ss_pred Hhcc-CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEE--eecccc
Confidence 9999 99999996433 332 223889999999999999999999632121122111111 156654 569887
Q ss_pred CCCc-eEEEEecchhhhhc
Q 023191 262 GPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 262 gp~g-G~l~~~~~~~~~~~ 279 (286)
|.-. |.++.++.+.+...
T Consensus 257 GG~PigA~la~~~~~~~~~ 275 (404)
T COG4992 257 GGFPIGAMLATEEIASAFT 275 (404)
T ss_pred CCccceeeEEchhhhhcCC
Confidence 7544 77777755455443
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=86.64 Aligned_cols=206 Identities=13% Similarity=0.053 Sum_probs=110.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-.|++.+++.+.+.... +.....+. .+.+.++.+.+.+.+.-..+ .+.+ .||+.|+.++++...
T Consensus 59 ~~p~v~~ai~~q~~~~~---~~~~~~~~-----~~~~~~la~~l~~~~p~~~~----~v~f~~sGseA~e~A~klar~~~ 126 (423)
T PRK05964 59 NHPYIDQAIREQLDRLD---HVIFAGFT-----HEPAERLAQRLVALTPGGLD----HVFFSDSGSVAVEVALKMALQYW 126 (423)
T ss_pred CCHHHHHHHHHHHhhCC---CccccccC-----CHHHHHHHHHHHHhCCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 36889999888776521 00000011 12333466777777642222 3555 555557776665431
Q ss_pred -----CCCCeEEeccCCCCcccCcccccccccc---ccce--eeeEEEecccCCCCCCCCHHHHHHHhhh--cCCcEEEE
Q 023191 134 -----KPHDRIMALDLPHGGHLSHGYQTDTKKI---SAVS--IFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVA 201 (286)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~---~~~g--~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v~i 201 (286)
....+|+.....|.+............. .+.+ .....++++.+ +....+++++++.+.+ .++.+|++
T Consensus 127 ~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~l~~~l~~~~~~iaavi~ 205 (423)
T PRK05964 127 RNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPD-GYEQATLDALEALLEKHAGEIAAFIV 205 (423)
T ss_pred HhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcc-hhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2346788888777665321111100000 0000 01222333321 1112237888888853 24567777
Q ss_pred cC--CC-CCC----ccCHHHHHHHHHhcCCEEEEeccccccccccC-CCC-CCCC-cceEEEeCCCCCCCCC--CceEEE
Q 023191 202 GA--SA-YAR----LYDYERIRKVCNKQKAIMLADMAHISGLVAAG-VIP-SPFE-YADVVTTTTHKSLRGP--RGAMIF 269 (286)
Q Consensus 202 ~~--~n-~g~----~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~-~~~~-~~D~v~~s~~K~l~gp--~gG~l~ 269 (286)
.| .. .|. ...+++|.++|++||+++|+|++|. |....+ ... .... ..|++++ .|+|+|+ +.|+++
T Consensus 206 Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~G~~~a~~~~~v~pDi~~~--~K~l~gG~~p~~av~ 282 (423)
T PRK05964 206 EPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIAT-GFGRTGTLFACEQAGVSPDIMCL--SKGLTGGYLPLAATL 282 (423)
T ss_pred ecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcCcchhHHHhcCCCCCeeee--ehhhhcCcccceEEE
Confidence 65 23 332 2348999999999999999999984 321111 100 0011 2677654 5999776 238889
Q ss_pred Eecchhhhhc
Q 023191 270 FRKGVKEINK 279 (286)
Q Consensus 270 ~~~~~~~~~~ 279 (286)
+++++.+...
T Consensus 283 ~~~~i~~~~~ 292 (423)
T PRK05964 283 CTAEIFEAFY 292 (423)
T ss_pred EcHHHHHhhh
Confidence 9988877654
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-07 Score=84.07 Aligned_cols=198 Identities=13% Similarity=0.040 Sum_probs=108.3
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHh---c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTAL---L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~---~ 133 (286)
-.|.|.+++.+.+.+... .. . +.. .+.+..+.+++.+.+....+ .+.+ .||+.|+.++++.. .
T Consensus 92 ~hp~v~~Av~~ql~~l~~---~~-~-~~~----~~~~~~lAe~L~~~~p~~~~----~v~f~~SGsEA~e~AlklAr~~t 158 (442)
T TIGR03372 92 RNPNVIAAVENQLAKQPL---HS-Q-ELL----DPLRALLAKTLAALTPGKLK----YSFFCNSGTESVEAALKLAKAYQ 158 (442)
T ss_pred CCHHHHHHHHHHHHhCCC---cc-c-ccC----CHHHHHHHHHHHHhCCCCcC----EEEEeCCchHHHHHHHHHHHHHH
Confidence 478999999887765221 11 1 111 12333466777777643322 2555 55666777655533 1
Q ss_pred --CCCCeEEeccCCCCcccCccccc-----cccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh-----cCCcEEEE
Q 023191 134 --KPHDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVA 201 (286)
Q Consensus 134 --~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-----~~tk~v~i 201 (286)
+...+|+.....|.+...-.... ++....-....+..+| -.|.+++++.+.. .++.+|++
T Consensus 159 ~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p--------~~d~~~~~~~l~~~~~~~~~vAavIv 230 (442)
T TIGR03372 159 SPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVA--------FGDIEAMLKALNECKKTGDDVAAIIL 230 (442)
T ss_pred hhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeC--------CCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence 13467888887666553111100 0000000000011122 1267777776642 25677777
Q ss_pred c--CCCCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccC--CCCCCCCcceEEEeCCCCCCCCC--CceEEEE
Q 023191 202 G--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSLRGP--RGAMIFF 270 (286)
Q Consensus 202 ~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l~gp--~gG~l~~ 270 (286)
. .++-|...| ++++.++|++||+++|+|++|. +|-.... .....+ ..|+++ +.|.++|. +.|++++
T Consensus 231 Epv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv-~PDivt--~gK~lg~G~~Pigavv~ 307 (442)
T TIGR03372 231 EPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGV-QPDILC--LAKALGGGVMPIGATIA 307 (442)
T ss_pred eCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCC-CCCeee--ehhhhcCCcccceEEEe
Confidence 6 333455555 9999999999999999999984 3322111 011111 268776 68999764 2466777
Q ss_pred ecchhhhhc
Q 023191 271 RKGVKEINK 279 (286)
Q Consensus 271 ~~~~~~~~~ 279 (286)
++++.+...
T Consensus 308 ~~~i~~~~~ 316 (442)
T TIGR03372 308 TEAVFSVLF 316 (442)
T ss_pred cHHHHHhhh
Confidence 888776653
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=82.28 Aligned_cols=187 Identities=19% Similarity=0.195 Sum_probs=123.0
Q ss_pred CHHHHHHhccccccCCCCCCCCCc-ccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGAR-YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd 137 (286)
.+++.+.....+.+ |.-|.-+.+ +|+.-+-.-.+| +++++++|++. .|+..-|.+++..++.++.+.||
T Consensus 110 ~~~ike~a~~~lrk-yGvGsCGPrGFYGt~DvHldlE----~~iakF~G~E~-----aivYs~gF~ti~S~ipafsKrGD 179 (467)
T KOG1358|consen 110 NEEIKEEASFTLRK-YGVGSCGPRGFYGTIDVHLDLE----KRIAKFMGTED-----AIVYSYGFSTIESAIPAFSKRGD 179 (467)
T ss_pred cHHHHHHHHHHHHH-hCCCCcCCCcccccceeecccH----HHHHHhhCCcc-----eeeeccccchhhhcchhhhccCc
Confidence 78888888877766 544433333 455444334555 88999999975 48888898855558999999999
Q ss_pred eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc------C-----CcE-EEE-c-C
Q 023191 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF------R-----PKL-IVA-G-A 203 (286)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~------~-----tk~-v~i-~-~ 203 (286)
-|.+.. ..-....++.++..-.+ ..+. ..|++++++...+. + |+- |++ . .
T Consensus 180 Ii~~de--------~~nfaIq~GlqlSRS~i--~~Fk------hndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~ 243 (467)
T KOG1358|consen 180 IIFVDE--------AVNFAIQKGLQLSRSTI--SYFK------HNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLY 243 (467)
T ss_pred EEEEeh--------hhhHHHHHHHhhhhhee--EEec------CCCHHHHHHhccCcchhhhhccccccceEEEEEEeec
Confidence 998876 22211222333332212 1112 23677776655330 1 232 333 3 8
Q ss_pred CCCCCccCHHHHHHHHHhcCCEEEEecccccccccc---CC---CCCCCCcceEEEeCCCCCCCCCCceEEEEec
Q 023191 204 SAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA---GV---IPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 272 (286)
Q Consensus 204 ~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~---~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (286)
.|+|...|+.+|.++..|+..-||.|+..+.|.... ++ +.-+....|++++|..-.+++ .||+..++.
T Consensus 244 ~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas-~GgFc~G~~ 317 (467)
T KOG1358|consen 244 ANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALAS-GGGFCAGKS 317 (467)
T ss_pred cCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccc-cCceeecce
Confidence 899999999999999999999999999999887754 11 122233589999998876643 456666644
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.3e-07 Score=83.35 Aligned_cols=195 Identities=13% Similarity=0.088 Sum_probs=111.9
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHh--cCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL--LKP 135 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~--~~~ 135 (286)
.|.+.+++.+.+......+. . .+.+.++.+.+.+.++.+ .|.+++ |+.|+..+++.. ...
T Consensus 93 ~p~i~~Av~~q~~~~~~~~~-------~----~~~~~~lAe~l~~~~~~~------~v~F~nSGtEA~e~AlrlAR~~TG 155 (453)
T PRK07046 93 PAPVARALAEQARRGLTTML-------P----SEDAAWVGEELARRFGLP------YWQVATTATDANRFVLRWARAVTG 155 (453)
T ss_pred CHHHHHHHHHHHHhCCCCCC-------C----CHHHHHHHHHHHHHhCCC------EEEEECCHHHHHHHHHHHHHHhhC
Confidence 68999999888765321111 1 133444667777777533 266655 444777665543 345
Q ss_pred CCeEEeccCCCCcccCccccccccc-----cccceeee----EEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcC--C
Q 023191 136 HDRIMALDLPHGGHLSHGYQTDTKK-----ISAVSIFF----ETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA--S 204 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~----~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~--~ 204 (286)
.++|+.....|.+...........+ ....|... ....++ + -|++.+++.+...+..+|++.| .
T Consensus 156 r~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~-nd~~~l~~~l~~~~vAavi~EPi~g 229 (453)
T PRK07046 156 RPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE-----F-NDLAALEAALADGDVAAVLAEPAMT 229 (453)
T ss_pred CCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC-----C-CCHHHHHHHhCCCCeEEEEECCCCC
Confidence 6788888877766521111000000 00111000 001111 1 2789999988644678888863 3
Q ss_pred CCCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 205 AYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 205 n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
+.|...+ ++++.++|++||+++|.|+++..+. ..+.....+. ..|+++ +.|.++|... |++.+++++.+..
T Consensus 230 ~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~-g~Gg~~~~~gv~PDi~t--~gK~lggG~Pi~av~g~~~i~~~~ 306 (453)
T PRK07046 230 NIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISS-GPGGYTRAHGLEPDFLV--VGKPIAGGVPCAVYGFSAELAERA 306 (453)
T ss_pred CCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCcc-CCcchhHHhCCCcccee--ehhhhcCCCcceeeeehHHHHHHH
Confidence 3443332 8999999999999999999985221 1111111111 268876 5899876544 8899998877665
Q ss_pred c
Q 023191 279 K 279 (286)
Q Consensus 279 ~ 279 (286)
.
T Consensus 307 ~ 307 (453)
T PRK07046 307 Q 307 (453)
T ss_pred h
Confidence 4
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9e-07 Score=78.01 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=120.7
Q ss_pred cCceecCC-------CCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCC-----CCcce
Q 023191 47 KGLELIPS-------ENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDP-----EKWGV 114 (286)
Q Consensus 47 ~~i~L~~~-------e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~-----~~~~~ 114 (286)
+.|||..| ..+.-+.|++|-...+.+.. ...|-+-.+.+.+.+.+.+. +||.+. +.+ .
T Consensus 27 ~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~------~k~Yl~i~G~~~f~~~~~~l---lFG~d~~~l~~~Rv-~ 96 (396)
T COG1448 27 NKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEK------TKNYLPIEGLPEFLEAVQKL---LFGADSPALAEDRV-A 96 (396)
T ss_pred CeeeeeeeeeeCCCCCcchhHHHHHHHHHhhcccc------ccccCCcCCcHHHHHHHHHH---hcCCCcHHHHhhhH-h
Confidence 66898754 22334555555544443322 23355556777777555544 467442 221 2
Q ss_pred eEEeCCChHHHHHHHH--HhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhh
Q 023191 115 NVQSLSGSPSNFQVYT--ALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT 192 (286)
Q Consensus 115 ~v~~~sG~~a~~~~l~--a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~ 192 (286)
.++...|+.|+..+.. .-..|...|.+++ |.|+.+......+|.+++..|+ .|.++..+|++.+.+.+.
T Consensus 97 t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~--------PtW~NH~~If~~aGl~v~~Y~Y-yd~~~~~~df~~mla~L~ 167 (396)
T COG1448 97 TVQTLGGTGALRVAADFLARFFPDATVWISD--------PTWPNHKAIFEAAGLEVETYPY-YDAETKGLDFDGMLADLK 167 (396)
T ss_pred heecCCcchHHHHHHHHHHHhCCCceEEeCC--------CCcHhHHHHHHhcCCceeeeec-cccccccccHHHHHHHHH
Confidence 2444444445553322 2256777899999 6666666556677877777775 455677899999988886
Q ss_pred hcC-CcEEEE--cCCC-CC---CccCHHHHHHHHHhcCCEEEEeccccccccccCCCC--CCCC-----cc-eEEEeCCC
Q 023191 193 LFR-PKLIVA--GASA-YA---RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPFE-----YA-DVVTTTTH 257 (286)
Q Consensus 193 ~~~-tk~v~i--~~~n-~g---~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~--~~~~-----~~-D~v~~s~~ 257 (286)
.-. -.+|++ |.|| || +....++|+++.++.+.+.+.|.| +-|.-. ++.. ..+. +. -+++.|++
T Consensus 168 ~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~A-YQGF~~-GleeDa~~lR~~a~~~~~~lva~S~S 245 (396)
T COG1448 168 TAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIA-YQGFAD-GLEEDAYALRLFAEVGPELLVASSFS 245 (396)
T ss_pred hCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehh-hhhhcc-chHHHHHHHHHHHHhCCcEEEEehhh
Confidence 532 245556 3677 66 344578999999999999999999 333222 1111 1110 12 37799999
Q ss_pred CCC--CCCCceEEE
Q 023191 258 KSL--RGPRGAMIF 269 (286)
Q Consensus 258 K~l--~gp~gG~l~ 269 (286)
|.| .|=|-|.+.
T Consensus 246 KnfgLYgERVGa~~ 259 (396)
T COG1448 246 KNFGLYGERVGALS 259 (396)
T ss_pred hhhhhhhhccceeE
Confidence 987 444444433
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.9e-07 Score=82.93 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=58.6
Q ss_pred HHHHHHHhhh---cCCcEEEEc--CCCCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceE
Q 023191 184 YDQLEKSATL---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADV 251 (286)
Q Consensus 184 ~e~l~~~i~~---~~tk~v~i~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~ 251 (286)
++++++.+.+ .++.+|++. .++.|...+ +++|.++|++||+++|.|++|. +|-..... ....+ ..|+
T Consensus 208 ~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv-~PDi 286 (460)
T PRK12403 208 ALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGF-EPDT 286 (460)
T ss_pred HHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCC-CCCe
Confidence 3556665532 245677776 333455555 9999999999999999999984 32222111 11111 2688
Q ss_pred EEeCCCCCCCCCC--ceEEEEecchhhhhc
Q 023191 252 VTTTTHKSLRGPR--GAMIFFRKGVKEINK 279 (286)
Q Consensus 252 v~~s~~K~l~gp~--gG~l~~~~~~~~~~~ 279 (286)
++ +.|.++|.. -|.+++++++.+...
T Consensus 287 v~--~gK~lggG~~Piga~v~~~~i~~~~~ 314 (460)
T PRK12403 287 LS--IAKGLTSGYVPMGGLVLSKRIAEALV 314 (460)
T ss_pred EE--EcccccccccceEEEEECHHHHHHHh
Confidence 86 789987542 266668888776654
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=83.58 Aligned_cols=178 Identities=17% Similarity=0.156 Sum_probs=112.9
Q ss_pred CCcchHHHHHHHHHHHHHHHCCCCCCC------cceeEEeCCChHHHHH-HHHHh------cCCC-----------CeEE
Q 023191 85 GGNEYIDMAESLCQKRALEAFRLDPEK------WGVNVQSLSGSPSNFQ-VYTAL------LKPH-----------DRIM 140 (286)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~g~~~~~------~~~~v~~~sG~~a~~~-~l~a~------~~~G-----------d~Vl 140 (286)
..++...+||..+-+|+.+..+++... -|-.|+.++.+.+.+. ++.+- ++.+ +-|.
T Consensus 106 ~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~ 185 (511)
T KOG0628|consen 106 ASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVA 185 (511)
T ss_pred ecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheE
Confidence 445668899999999999999885311 1134666666553332 22221 1222 2333
Q ss_pred ec-cCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcC-----CcEEEEc--CCCCCCccCH
Q 023191 141 AL-DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR-----PKLIVAG--ASAYARLYDY 212 (286)
Q Consensus 141 ~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~-----tk~v~i~--~~n~g~~~~l 212 (286)
++ +-.|.+. .+++.+.+.+.+.++ .+ +++.++.+.|+++|.+.. |-.++.+ .++.-...++
T Consensus 186 Y~SDqahssv--------eka~~i~~VklR~l~--td-~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l 254 (511)
T KOG0628|consen 186 YCSDQAHSSV--------EKACLIAGVKLRALP--TD-ENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDEL 254 (511)
T ss_pred EecCcccchH--------HHhHhhcceeEEEee--cc-cCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccH
Confidence 33 3222222 234556776777675 44 478999999999997643 3333334 2223367789
Q ss_pred HHHHHHHHhcCCEEEEeccccccccccCC---CCCCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 213 ERIRKVCNKQKAIMLADMAHISGLVAAGV---IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 213 ~~I~~ia~~~~~~vivD~a~~~g~~~~~~---~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
++|..+|+++++|+++|+|++..+..... .-.+++.+|.+.+++|||+..--. ..++.++.
T Consensus 255 ~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~ 319 (511)
T KOG0628|consen 255 EELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDG 319 (511)
T ss_pred HHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecC
Confidence 99999999999999999996544333222 223445699999999999866555 66777765
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=80.36 Aligned_cols=205 Identities=14% Similarity=0.126 Sum_probs=105.3
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~a~~~~l~a~~--- 133 (286)
-.|.+.+++.+.+.... +.... +. .+...++.+++.+..... + .+.++ ||+.|+..+++...
T Consensus 57 ~~p~v~~ai~~q~~~~~---~~~~~-~~-----~~~~~~la~~L~~~~~~~-~----~v~f~~sGseA~e~AlklAr~~~ 122 (408)
T PRK04612 57 NDPDLVAALTEQAGKLW---HTSNV-FY-----SAPPLKLAEELVTASRFA-E----KVFLCNSGTEANEAAIKLVRKWA 122 (408)
T ss_pred CCHHHHHHHHHHHHhcc---ccccc-cC-----CHHHHHHHHHHHhhCCCC-C----EEEEcCchHHHHHHHHHHHHHHH
Confidence 47888888888775421 11110 11 122223556666655321 2 36665 45557776654331
Q ss_pred ---C--C-CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-C
Q 023191 134 ---K--P-HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-Y 206 (286)
Q Consensus 134 ---~--~-Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~ 206 (286)
. + ..+|+.....|.+...-....-... .... .+...+-.+. .-...|++.+++.+.+.++.+|++.|.+ +
T Consensus 123 ~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~-~~~~-~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~aavi~eP~~~~ 199 (408)
T PRK04612 123 SSQGRPADKRVIVTFRGSFHGRTLAAVTATAQP-KYQE-GYEPLPGGFR-YVDFNDVEALEAAMAGGDVAAVMLEPIQGE 199 (408)
T ss_pred HhhCCCCCCcEEEEECCCcCCccHHHHHhcCCc-cccc-CCCCCCCCce-EcCCCCHHHHHHhhCCCCEEEEEECCccCC
Confidence 1 1 2468888766665531111000000 0000 0000000000 0012378999988865356677776555 4
Q ss_pred C-Ccc----CHHHHHHHHHhcCCEEEEeccccccccccC-CCCCCCCcceEEEeCCCCCCCCC-CceEEEEecchhhhhc
Q 023191 207 A-RLY----DYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSPFEYADVVTTTTHKSLRGP-RGAMIFFRKGVKEINK 279 (286)
Q Consensus 207 g-~~~----~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~~~~~~D~v~~s~~K~l~gp-~gG~l~~~~~~~~~~~ 279 (286)
| ... -+++|.++|++||+++|+|++|. |.-..+ .......+...-+.++.|.+++. +-|++++++++.+...
T Consensus 200 gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~~~~~~~~~ 278 (408)
T PRK04612 200 GGVMPAAPGFLARVRALCDQHDALLVLDEIQC-GMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQ 278 (408)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEECHHHHhhhc
Confidence 4 222 38899999999999999999986 321111 11000012333456679988643 3478888877766655
Q ss_pred c
Q 023191 280 Q 280 (286)
Q Consensus 280 ~ 280 (286)
.
T Consensus 279 ~ 279 (408)
T PRK04612 279 F 279 (408)
T ss_pred C
Confidence 4
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.1e-07 Score=82.36 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=109.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~--~~ 134 (286)
-+|++.+++.+.+.... .+.... + .. +...++.+++.+++.-..+ .|++ .||+.|+.++++.. ..
T Consensus 60 ~~p~v~~a~~~q~~~~~-~~~~~~--~-~~----~~~~~la~~L~~~~~~~~~----~v~f~~SGseA~e~AlklAr~~t 127 (433)
T PRK08117 60 RHPKVVQAIKEQADKLM-HGPSGV--I-YY----ESILKLAEELAEITPGGLD----CFFFSNSGAEAIEGALKLAKHVT 127 (433)
T ss_pred CCHHHHHHHHHHHHhcc-Cccccc--c-CC----HHHHHHHHHHHHhCCCCCC----EEEEeCcHHHHHHHHHHHHHHhc
Confidence 47899999988775421 111110 1 11 2333455777777732222 3666 56666887766642 23
Q ss_pred CCCeEEeccCCCCcccCccc------cccccc--cccceeeeEEEecccCC---CCC------CCCHHHHHHHhhh----
Q 023191 135 PHDRIMALDLPHGGHLSHGY------QTDTKK--ISAVSIFFETMPYRLNE---STG------YIDYDQLEKSATL---- 193 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~------~~~~~~--~~~~g~~~~~v~~~~~~---~~~------~~d~e~l~~~i~~---- 193 (286)
...+|+..+..|.+...-.. ..++.. ....+ +..+|++... ... .-|++++++.+..
T Consensus 128 gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 205 (433)
T PRK08117 128 KRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGS--VYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTP 205 (433)
T ss_pred CCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCC--cEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCC
Confidence 34667777755554321100 000000 00011 1223322100 000 0256677776642
Q ss_pred cCCcEEEEc--CCCCCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCC-C-CCCC-cceEEEeCCCCCCCCC-
Q 023191 194 FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVI-P-SPFE-YADVVTTTTHKSLRGP- 263 (286)
Q Consensus 194 ~~tk~v~i~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-~-~~~~-~~D~v~~s~~K~l~gp- 263 (286)
.++.+|++. .++-|...+ +++|.++|++||+++|+|++|. |....+.. . ..+. -.|+ .++.|.+++.
T Consensus 206 ~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~gr~G~~~~~~~~gv~pDi--~t~sK~lg~G~ 282 (433)
T PRK08117 206 EEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-GFGRTGEWFAAQTFGVVPDI--MTIAKGIASGL 282 (433)
T ss_pred CcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccccchhHhhcCCCCCE--eehhhhccCCC
Confidence 256777776 344555555 9999999999999999999987 53221210 0 0111 1454 5889998643
Q ss_pred CceEEEEecchhhhhc
Q 023191 264 RGAMIFFRKGVKEINK 279 (286)
Q Consensus 264 ~gG~l~~~~~~~~~~~ 279 (286)
+.|++++++++.+...
T Consensus 283 pigav~~~~~i~~~~~ 298 (433)
T PRK08117 283 PLSAVVASKELMEQWP 298 (433)
T ss_pred cceeEEEcHHHHhhcc
Confidence 3488888888766543
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.9e-07 Score=81.46 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=63.9
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCC-CCC---ccC--HHHHHHHHHhcCCEEEEeccccccccccC-CCCCCCC--cceEEE
Q 023191 183 DYDQLEKSATLFRPKLIVAGASA-YAR---LYD--YERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSPFE--YADVVT 253 (286)
Q Consensus 183 d~e~l~~~i~~~~tk~v~i~~~n-~g~---~~~--l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~~~~--~~D~v~ 253 (286)
|++.+++.+...++++|++.|.. .|. ... +++|.++|++||+++|.|+++. |....+ .....+. ..| +
T Consensus 155 d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~PD--i 231 (382)
T PLN00144 155 NLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQC-GLGRTGYLWAHEAYGVEPD--I 231 (382)
T ss_pred CHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchHhhhhhcCCCCC--E
Confidence 78999988865578888887444 221 223 8899999999999999999975 221111 1110011 256 5
Q ss_pred eCCCCCCCCC-CceEEEEecchhhhhcc
Q 023191 254 TTTHKSLRGP-RGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 254 ~s~~K~l~gp-~gG~l~~~~~~~~~~~~ 280 (286)
.++.|.+++. +.|+++++.++.+..+.
T Consensus 232 ~t~sK~l~~G~pig~v~~~~~~~~~~~~ 259 (382)
T PLN00144 232 MTLAKPLAGGLPIGAVLVTEKVASAINP 259 (382)
T ss_pred EEecccccCCcceEEEEEcHHHHhccCC
Confidence 6679998543 34999999888776654
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-06 Score=80.06 Aligned_cols=209 Identities=11% Similarity=0.035 Sum_probs=107.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh--cCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKP 135 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~--~~~ 135 (286)
-.|++.+++.+.+.+.. .+.. . ....+.+.++.+++.+.+.....+ .-.+.+||+.|+..+++.. ...
T Consensus 73 ~~p~v~~ai~~q~~~~~--~~~~----~--~~~~~~~~~la~~l~~~~p~~~~~--~v~f~~sGseA~e~AlklAr~~tg 142 (443)
T PRK06058 73 SAPRVVEAVREQVARFT--HTCF----M--VTPYEGYVAVAEQLNRLTPGDHEK--RSALFNSGAEAVENAVKIARSYTG 142 (443)
T ss_pred CCHHHHHHHHHHHHhcc--Cccc----c--ccCCHHHHHHHHHHHHhCCCCCCC--EEEEeCCcHHHHHHHHHHHHHhhC
Confidence 37899999988776421 0000 0 001133334667777776532111 1245566766777666522 234
Q ss_pred CCeEEeccCCCCcccCcccc------ccccccccceeeeEEEecc--cCCC-CCCC--------CHHHHHHHhhhcCCcE
Q 023191 136 HDRIMALDLPHGGHLSHGYQ------TDTKKISAVSIFFETMPYR--LNES-TGYI--------DYDQLEKSATLFRPKL 198 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~--~~~~-~~~~--------d~e~l~~~i~~~~tk~ 198 (286)
.++|+.....|.+...-... .++.+....-..+..+|++ .+.. .... .++.+++.+...++.+
T Consensus 143 r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAa 222 (443)
T PRK06058 143 RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAA 222 (443)
T ss_pred CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEE
Confidence 47898888777665310000 0111100000001112211 1100 0011 1233444443336788
Q ss_pred EEEcCCC-C-CCcc----CHHHHHHHHHhcCCEEEEeccccccccccC-CC---CCCCCcceEEEeCCCCCCCCCC-ceE
Q 023191 199 IVAGASA-Y-ARLY----DYERIRKVCNKQKAIMLADMAHISGLVAAG-VI---PSPFEYADVVTTTTHKSLRGPR-GAM 267 (286)
Q Consensus 199 v~i~~~n-~-g~~~----~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~---~~~~~~~D~v~~s~~K~l~gp~-gG~ 267 (286)
|++.|-+ . |... -+++|.++|++||+++|.|+++. |.--.+ .. ...+ ..|++++ .|.++|.- .|+
T Consensus 223 vi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-GfgRtG~~fa~~~~gv-~PDiv~~--gK~l~~G~Pi~a 298 (443)
T PRK06058 223 VIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT-GFARTGAWFACEHEGI-VPDLITT--AKGIAGGLPLSA 298 (443)
T ss_pred EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcChhhhHHHhcCC-CCCEEEE--cccccCCCccEE
Confidence 8886443 3 3332 29999999999999999999975 321111 11 1111 2688877 49886543 388
Q ss_pred EEEecchhhhhcc
Q 023191 268 IFFRKGVKEINKQ 280 (286)
Q Consensus 268 l~~~~~~~~~~~~ 280 (286)
+++++++.+..+.
T Consensus 299 v~~~~~i~~~~~~ 311 (443)
T PRK06058 299 VTGRAEIMDAPHP 311 (443)
T ss_pred EEEcHHHHhhccC
Confidence 8899887766553
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-06 Score=78.61 Aligned_cols=196 Identities=15% Similarity=0.124 Sum_probs=108.3
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHh--cCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL--LKP 135 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~--~~~ 135 (286)
+|+|.+++.+.+..... + ... .+.+.++.+++.+.+.. .+ .|.+++ |+.|+..+++.. ...
T Consensus 117 ~p~v~~av~~ql~~~~~--~-----~~~----~~~~~~lAe~l~~~~p~-~~----~v~f~~SGsEA~e~AlklAR~~tg 180 (474)
T PLN02482 117 DDEVLAALAETMKKGTS--F-----GAP----CLLENVLAEMVIDAVPS-VE----MVRFVNSGTEACMGVLRLARAYTG 180 (474)
T ss_pred CHHHHHHHHHHHhhCCC--C-----CCC----CHHHHHHHHHHHHhCCC-CC----EEEEeCChHHHHHHHHHHHHHhcC
Confidence 68888888887765221 1 011 12333466777776642 22 366655 544777665543 234
Q ss_pred CCeEEeccCCCCcccCccccccccc------cccceee----eEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-
Q 023191 136 HDRIMALDLPHGGHLSHGYQTDTKK------ISAVSIF----FETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG- 202 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~------~~~~g~~----~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~- 202 (286)
.++|+.....|.++..........+ ....+.. ...+.++. -|++++++.+..+ +..+|++.
T Consensus 181 r~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------nd~~~l~~~l~~~~~~iAavI~Ep 254 (474)
T PLN02482 181 REKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY------NDLEAVKKLFEANKGEIAAVILEP 254 (474)
T ss_pred CCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC------CChHHHHHHHHhCCCceEEEEECC
Confidence 5678888777766532111000000 0000000 00011111 2788999888642 46677776
Q ss_pred -CCCCCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCCC-CCCC-cceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 203 -ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFE-YADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 203 -~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~~~-~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
.++.|.+.| +++|.++|++||+++|+|++| .|........ ..+. ..|++ ++.|.++|... |.+.+++++
T Consensus 255 v~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~-tGfR~g~~ga~~~~gv~PDi~--t~gK~lggG~Pigav~g~~ei 331 (474)
T PLN02482 255 VVGNSGFIVPKKEFLEGLREITKENGALLVFDEVM-TGFRIAYGGAQEYFGITPDLT--TLGKVIGGGLPVGAYGGRREI 331 (474)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCeecCcchHhHHhCCCCCEE--EecchhhCCCceEEEEEcHHH
Confidence 444454333 779999999999999999998 4542211100 0011 26775 45899976333 666888888
Q ss_pred hhhhc
Q 023191 275 KEINK 279 (286)
Q Consensus 275 ~~~~~ 279 (286)
.+...
T Consensus 332 ~~~~~ 336 (474)
T PLN02482 332 MEMVA 336 (474)
T ss_pred HHhhc
Confidence 87765
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-06 Score=79.06 Aligned_cols=207 Identities=19% Similarity=0.150 Sum_probs=108.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-.|.+.+++.+.+.+.. +.....+ .+ +.+.++.+++.+++....+ .|.+ .||+.|+.+++....
T Consensus 63 ~~p~v~~ai~~ql~~l~---~~~~~~~-~~----~~~~~la~~l~~~~p~~~~----~v~f~~sGseA~e~AlklAr~~~ 130 (442)
T PRK13360 63 GRPEIVEAVRAQAGELD---YAPAFQM-GH----PKAFELANRIAEIAPGGLN----HVFFTNSGSESVDTALKIALAYH 130 (442)
T ss_pred CCHHHHHHHHHHHHhCC---CcccCCc-CC----HHHHHHHHHHHHhCCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 47889989888775421 1000001 11 2233456777777632222 3555 455557776655331
Q ss_pred ----CC-CCeEEeccCCCCcccCcc-----ccccccccccceeeeEEEecccC--CCCCCC--------CHHHHHHHhhh
Q 023191 134 ----KP-HDRIMALDLPHGGHLSHG-----YQTDTKKISAVSIFFETMPYRLN--ESTGYI--------DYDQLEKSATL 193 (286)
Q Consensus 134 ----~~-Gd~Vl~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~v~~~~~--~~~~~~--------d~e~l~~~i~~ 193 (286)
.+ ..+|+.....|.+...-. ...++....-....+..+|.+.+ ...+.. .++++++++..
T Consensus 131 ~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 210 (442)
T PRK13360 131 RARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTL 210 (442)
T ss_pred HhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHh
Confidence 12 357888887776652100 00011100000001122332211 000111 24677777752
Q ss_pred ---cCCcEEEEc--CCCCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEEEeCCCCCCC
Q 023191 194 ---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKSLR 261 (286)
Q Consensus 194 ---~~tk~v~i~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~l~ 261 (286)
.++.+|++. .++.|...+ +++|.++|++||+++|+|++|. +|-..... ....+ ..|++ ++.|.++
T Consensus 211 ~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDiv--t~gK~l~ 287 (442)
T PRK13360 211 HDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGV-TPDLL--TCAKGLT 287 (442)
T ss_pred cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC-CCcee--eeeeccc
Confidence 245677776 333555555 9999999999999999999983 44332111 11111 26776 5689997
Q ss_pred CC--CceEEEEecchhhhhc
Q 023191 262 GP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 262 gp--~gG~l~~~~~~~~~~~ 279 (286)
|. +-|.+++++++.+...
T Consensus 288 gG~~P~gav~~~~~i~~~~~ 307 (442)
T PRK13360 288 NGAIPMGAVFVSSEIHDAFM 307 (442)
T ss_pred cCccceEEEEEcHHHHHHhh
Confidence 53 2366777888776654
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-06 Score=79.37 Aligned_cols=209 Identities=11% Similarity=0.039 Sum_probs=110.3
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC-CCCcceeEEeCCChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSLSGSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~v~~~sG~~a~~~~l~a~--~~ 134 (286)
-.|.+.+++.+.+.... +... .. ...+.+.++.+.+.+..... .+. ..+.+||+.|+..++... ..
T Consensus 57 ~~p~v~~ai~~ql~~~~---~~~~---~~--~~~~~~~~la~~l~~~~p~~~~~~---~~f~~sGseA~e~AlklAr~~t 125 (421)
T PRK09792 57 RHPDLVAAVEQQLQQFT---HTAY---QI--VPYESYVTLAEKINALAPVSGQAK---TAFFTTGAEAVENAVKIARAHT 125 (421)
T ss_pred CCHHHHHHHHHHHHhcc---Cccc---Cc--cCCHHHHHHHHHHHHhCCCCCCce---EEEeCChHHHHHHHHHHHHHhc
Confidence 37888888888776421 1100 00 01122223556676665421 121 244566666777655533 23
Q ss_pred CCCeEEeccCCCCcccCcccc------ccccccccceeeeEEEecccCCCCC--CCCHHHHHHHhhh----cCCcEEEEc
Q 023191 135 PHDRIMALDLPHGGHLSHGYQ------TDTKKISAVSIFFETMPYRLNESTG--YIDYDQLEKSATL----FRPKLIVAG 202 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~~~~~~~--~~d~e~l~~~i~~----~~tk~v~i~ 202 (286)
...+|+.....|.+...-... .++.+....-..+..+|++.+.... .-+++.+++.+.+ .++++|++.
T Consensus 126 gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~E 205 (421)
T PRK09792 126 GRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFE 205 (421)
T ss_pred CCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 345788887766655311100 0111100000012334444321110 1135778887752 357788887
Q ss_pred CCC--CCC-ccC---HHHHHHHHHhcCCEEEEeccccc-cccccCCCC-CCC-CcceEEEeCCCCCCCCC-CceEEEEec
Q 023191 203 ASA--YAR-LYD---YERIRKVCNKQKAIMLADMAHIS-GLVAAGVIP-SPF-EYADVVTTTTHKSLRGP-RGAMIFFRK 272 (286)
Q Consensus 203 ~~n--~g~-~~~---l~~I~~ia~~~~~~vivD~a~~~-g~~~~~~~~-~~~-~~~D~v~~s~~K~l~gp-~gG~l~~~~ 272 (286)
|.. .|. ..| +++|.++|++||+++|+|+++.. |-.. .... ..+ ...|+ .++.|.+++. +.|++++++
T Consensus 206 Pvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G-~~~a~~~~~~~pDi--~t~gK~l~~G~pigav~~~~ 282 (421)
T PRK09792 206 PVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG-KLFAMDHYADKPDL--MTMAKSLAGGMPLSGVVGNA 282 (421)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC-chhHHHhcCCCCcE--EEeehhhcCCCceEEEEEcH
Confidence 443 343 335 88999999999999999999762 2211 1111 001 12574 5669998653 348899998
Q ss_pred chhhhhcc
Q 023191 273 GVKEINKQ 280 (286)
Q Consensus 273 ~~~~~~~~ 280 (286)
++.+....
T Consensus 283 ~i~~~~~~ 290 (421)
T PRK09792 283 NIMDAPAP 290 (421)
T ss_pred HHHhccCC
Confidence 88776553
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-06 Score=78.08 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=109.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~--~~ 134 (286)
-.|.+.+++.+.+.+....+ + .+ +.+.++.+.+.+.++...+ .|.+ .||+.|+..+++.. ..
T Consensus 70 ~~p~v~~ai~~q~~~~~~~~------~-~~----~~~~~la~~L~~~~~~~~~----~v~f~~SGsEA~e~AiklAr~~t 134 (433)
T PRK00615 70 SHPKICDAIQQGAERGTSYG------L-TS----EQEILFAEELFSYLGLEDH----KIRFVSSGTEATMTAVRLARGIT 134 (433)
T ss_pred CCHHHHHHHHHHHHhCCCCC------C-CC----HHHHHHHHHHHHhCCCCcC----EEEEeCchHHHHHHHHHHHHHhh
Confidence 47899999988776522100 1 11 2223355777777654322 3555 45555777666543 23
Q ss_pred CCCeEEeccCCCCcccCc-cccccccccccceeeeEEE-ecccCCC--C-CCCCHHHHHHHhhhc--CCcEEEEc--CCC
Q 023191 135 PHDRIMALDLPHGGHLSH-GYQTDTKKISAVSIFFETM-PYRLNES--T-GYIDYDQLEKSATLF--RPKLIVAG--ASA 205 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~v-~~~~~~~--~-~~~d~e~l~~~i~~~--~tk~v~i~--~~n 205 (286)
...+|+.....|.+.... ...+-...-...+. .... +-..... . ..-|++++++.+.++ ++.+|++. .++
T Consensus 135 gr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~ 213 (433)
T PRK00615 135 GRSIIIKFLGCYHGHADTLLQGISFSETSLDTL-THLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICAN 213 (433)
T ss_pred CCCEEEEEcCccCCCCcccCcccccCCCCcCcC-CCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 346788777666664311 10000000000000 0000 0000000 0 012788898888542 45677776 444
Q ss_pred CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCC---CCCCCCcceEEEeCCCCCCCCC-CceEEEEecchhhh
Q 023191 206 YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV---IPSPFEYADVVTTTTHKSLRGP-RGAMIFFRKGVKEI 277 (286)
Q Consensus 206 ~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~---~~~~~~~~D~v~~s~~K~l~gp-~gG~l~~~~~~~~~ 277 (286)
.|...| +++|.++|++||+++|+|++|. |...... ....+ ..|+++ +.|.++|. .+|++++++++.+.
T Consensus 214 ~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv-~PDi~~--~gK~lggG~p~~av~~~~~i~~~ 289 (433)
T PRK00615 214 MGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHV-KPDITV--YGKILGGGLPAAAVVAHKSIMDH 289 (433)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCC-CCCeEE--EcccccCCcceeeeeecHHHHhh
Confidence 454444 6799999999999999999984 5411111 11111 268775 69999753 46999999998877
Q ss_pred hc
Q 023191 278 NK 279 (286)
Q Consensus 278 ~~ 279 (286)
..
T Consensus 290 ~~ 291 (433)
T PRK00615 290 LA 291 (433)
T ss_pred hc
Confidence 64
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.4e-06 Score=75.48 Aligned_cols=207 Identities=13% Similarity=0.021 Sum_probs=109.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh--cCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKP 135 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~--~~~ 135 (286)
.+|.|++|+.+.+....... .+ +... +....+.+++.+.+..+... ...+.+||+.|+.+++..- ...
T Consensus 73 ~hP~Vv~Av~~q~~~~~h~~---~~-~~~~----e~~v~~ae~L~~~~p~~~~~--~~~f~~sGaeA~E~AiKiAr~~Tg 142 (447)
T COG0160 73 NHPRVVEAVKRQLAKLNHTH---TR-DLYY----EPYVELAEKLTALAPGSGLK--KVFFGNSGAEAVEAAIKIARAYTG 142 (447)
T ss_pred CCHHHHHHHHHHHHHhhccc---CC-cccc----hhHHHHHHHHHHhCCcccCC--eEEecCCcHHHHHHHHHHHHHHhC
Confidence 47999999988665421001 11 1111 22222446666666542111 2344466666887766544 344
Q ss_pred CCeEEeccCCCCcccCcccc------ccccccccceeeeEEEecccCCC-CC--------CCCHHHHHHHhhh-----cC
Q 023191 136 HDRIMALDLPHGGHLSHGYQ------TDTKKISAVSIFFETMPYRLNES-TG--------YIDYDQLEKSATL-----FR 195 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~~~~~-~~--------~~d~e~l~~~i~~-----~~ 195 (286)
+..|+.+...|.+...-... .++.+..-....+..+|++.... -+ .-..+.++..+.. .+
T Consensus 143 r~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~ 222 (447)
T COG0160 143 RPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEE 222 (447)
T ss_pred CCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCc
Confidence 56788887766654321111 11111111112244566552211 11 1133445554432 24
Q ss_pred CcEEEEc--CCCCCCc----cCHHHHHHHHHhcCCEEEEeccccccccccCCCC---CCCCcceEEEeCCCCCCCCCCc-
Q 023191 196 PKLIVAG--ASAYARL----YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRG- 265 (286)
Q Consensus 196 tk~v~i~--~~n~g~~----~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~gp~g- 265 (286)
+.++++. ...-|.. .-++++.++|++||+++|+|++|..--....++. ..+ -.|+++ +.|.++|.-.
T Consensus 223 vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv-~PDivt--~aK~ig~G~Pl 299 (447)
T COG0160 223 VAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGV-EPDIVT--LAKSLGGGLPL 299 (447)
T ss_pred eeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCC-CCCEEE--ecccccCCCce
Confidence 7788886 2223322 2388999999999999999999973211112211 111 267776 4688877444
Q ss_pred eEEEEecchhhh
Q 023191 266 AMIFFRKGVKEI 277 (286)
Q Consensus 266 G~l~~~~~~~~~ 277 (286)
|.+.++.++.++
T Consensus 300 ~avv~r~ei~~~ 311 (447)
T COG0160 300 SAVVGRAEIMDW 311 (447)
T ss_pred eEEeccHHhccc
Confidence 999999888764
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.8e-06 Score=78.35 Aligned_cols=206 Identities=11% Similarity=0.043 Sum_probs=106.3
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-.|.+.+++.+.+.... +.....+. .+...++.+++.+.+..+.+ .|.+ +||+.|+.+++....
T Consensus 69 ~~p~v~~Av~~q~~~~~---~~~~~~~~-----~~~~~~la~~l~~~~p~~~~----~v~f~~sGseAve~AlklAr~~~ 136 (460)
T PRK06541 69 GRAELAEAAAKQAGTLA---FFPLWSYA-----HPPAIELAERLAALAPGDLN----RVFFTTGGSEAVESAWKLAKQYF 136 (460)
T ss_pred CCHHHHHHHHHHHhhCc---CccccccC-----CHHHHHHHHHHHHhCCCCcC----EEEEcCCcHHHHHHHHHHHHHHH
Confidence 37889999988776421 10000011 12223355777776543222 3565 455557776555321
Q ss_pred --C---CCCeEEeccCCCCcccCccccc-----cccc--cccceeeeEEEecccCC--CCCCCC--------HHHHHHHh
Q 023191 134 --K---PHDRIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNE--STGYID--------YDQLEKSA 191 (286)
Q Consensus 134 --~---~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~--~~~~~d--------~e~l~~~i 191 (286)
. ...+|+.....|.+...-.... ++.. ....| +..+|.+... ..+.-| ++.+++.+
T Consensus 137 ~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 214 (460)
T PRK06541 137 KLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPG--GFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAI 214 (460)
T ss_pred HhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCC--cEEeCCCccccccccCCCHHHHHHHHHHHHHHHH
Confidence 1 2467888876666553211110 0000 00111 1222221100 001112 36677777
Q ss_pred hh---cCCcEEEEcC-CC-CCCccC----HHHHHHHHHhcCCEEEEeccc-cccccccCCCCCCCC-cceEEEeCCCCCC
Q 023191 192 TL---FRPKLIVAGA-SA-YARLYD----YERIRKVCNKQKAIMLADMAH-ISGLVAAGVIPSPFE-YADVVTTTTHKSL 260 (286)
Q Consensus 192 ~~---~~tk~v~i~~-~n-~g~~~~----l~~I~~ia~~~~~~vivD~a~-~~g~~~~~~~~~~~~-~~D~v~~s~~K~l 260 (286)
.. .++.+|++.| .+ .|...+ +++|.++|++||+++|+|++| ++|-.........+. ..|+++ +.|.+
T Consensus 215 ~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l 292 (460)
T PRK06541 215 EFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGI 292 (460)
T ss_pred HhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--ecccc
Confidence 53 2455666664 23 455555 999999999999999999998 455332211110011 268775 78998
Q ss_pred CCC--CceEEEEecchhhhhc
Q 023191 261 RGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 261 ~gp--~gG~l~~~~~~~~~~~ 279 (286)
++. +-|++++++++.+...
T Consensus 293 ~~G~~pigav~~~~~i~~~~~ 313 (460)
T PRK06541 293 TSGYSPLGAMIASDRLFEPFL 313 (460)
T ss_pred cCCccceeEEEEcHHHHHHhh
Confidence 753 2477777777665443
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-06 Score=78.04 Aligned_cols=206 Identities=15% Similarity=0.089 Sum_probs=104.2
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe--CCChHHHHHHHHHh--c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS--LSGSPSNFQVYTAL--L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~--~sG~~a~~~~l~a~--~ 133 (286)
-+|.+.+++.+.+.... +.....+ .+ +.+.++.+.+.+.+..+.+ +...+.+ .||+.|+..+++.. .
T Consensus 56 ~~p~v~~ai~~ql~~~~---~~~~~~~-~~----~~~~~lae~l~~~~~~~~~-~~~~~~f~~~sGseA~e~AlklAr~~ 126 (425)
T PRK09264 56 NNPVLKQALIDYLQRDG---ITHGLDM-HT----TAKREFLETFEETILKPRG-LDYKVQFTGPTGTNAVEAALKLARKV 126 (425)
T ss_pred CCHHHHHHHHHHHHhcc---ccccccc-Cc----HHHHHHHHHHHHhhcCCcC-CCceEEEeCCCHHHHHHHHHHHHHHh
Confidence 37888999988775311 1000001 11 2222345666665422110 0013544 47777777655543 3
Q ss_pred CCCCeEEeccCCCCcccCccc-----cccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc-
Q 023191 134 KPHDRIMALDLPHGGHLSHGY-----QTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG- 202 (286)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~- 202 (286)
....+|+.....|.+...-.. ..++......-..+..+|++.......-|++++++.+.+. ++.+|++.
T Consensus 127 tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Ep 206 (425)
T PRK09264 127 TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVET 206 (425)
T ss_pred cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEec
Confidence 344678887766665421000 0011110000001233443211000013678888888642 35677775
Q ss_pred -CCCCCC-c---cCHHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEEEeCCCCCCCC-C-CceEEEEec
Q 023191 203 -ASAYAR-L---YDYERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKSLRG-P-RGAMIFFRK 272 (286)
Q Consensus 203 -~~n~g~-~---~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~l~g-p-~gG~l~~~~ 272 (286)
..+.|. . ..+++|.++|++||+++|+|++|. +|-....+ ....+ ..|++++ .|.+++ . +-|++++++
T Consensus 207 v~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v-~PDi~t~--~K~l~~~G~pigav~~~~ 283 (425)
T PRK09264 207 VQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGI-TPDIVTL--SKSISGYGLPMALVLIKP 283 (425)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCC-CCCEEEe--ccccCCCccceEEEEEch
Confidence 333442 2 359999999999999999999985 21111000 00111 2687765 598864 2 228888887
Q ss_pred chh
Q 023191 273 GVK 275 (286)
Q Consensus 273 ~~~ 275 (286)
++.
T Consensus 284 ~i~ 286 (425)
T PRK09264 284 ELD 286 (425)
T ss_pred hhh
Confidence 764
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.6e-06 Score=76.05 Aligned_cols=207 Identities=15% Similarity=0.096 Sum_probs=108.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~--~~ 134 (286)
-.|.+.+++.+.+.... +.... .... +...++.+++.+.+.-.... .|.+++ |+.|+.++++.. ..
T Consensus 57 ~~p~v~~ai~~ql~~l~---~~~~~-~~~~----~~~~~la~~l~~~~p~~~~~---~v~f~~SGseA~e~AlklAr~~t 125 (425)
T PRK07495 57 RHPRVIAAVKAQLDRFT---HTCHQ-VVPY----ENYVRLAERLNALVPGDFAK---KTIFVTTGAEAVENAVKIARAAT 125 (425)
T ss_pred CCHHHHHHHHHHHhhcc---CcccC-ccCC----HHHHHHHHHHHHhCCCCCCC---EEEECCchHHHHHHHHHHHHHhh
Confidence 47888899888776421 10000 0111 22233557777766432111 366655 555777665533 23
Q ss_pred CCCeEEeccCCCCcccCcccc------cccccc--ccceeeeEEEecccCCCCC--CCCHHHHHHHhh----hcCCcEEE
Q 023191 135 PHDRIMALDLPHGGHLSHGYQ------TDTKKI--SAVSIFFETMPYRLNESTG--YIDYDQLEKSAT----LFRPKLIV 200 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~------~~~~~~--~~~g~~~~~v~~~~~~~~~--~~d~e~l~~~i~----~~~tk~v~ 200 (286)
...+|+.....|.+...-... .++... ...+ +..+|++.+.... .-+++++++.+. ..++++|+
T Consensus 126 gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi 203 (425)
T PRK07495 126 GRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPD--VYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAII 203 (425)
T ss_pred CCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCC--eEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEE
Confidence 456788887766655311100 011110 0111 2334433221110 012455576664 23577888
Q ss_pred Ec--CCCCCCc-c---CHHHHHHHHHhcCCEEEEeccccccccccC-CCCC-CCC-cceEEEeCCCCCCCCC-CceEEEE
Q 023191 201 AG--ASAYARL-Y---DYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS-PFE-YADVVTTTTHKSLRGP-RGAMIFF 270 (286)
Q Consensus 201 i~--~~n~g~~-~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~-~~~-~~D~v~~s~~K~l~gp-~gG~l~~ 270 (286)
+. ..|.|.. . -+++|.++|++||+++|.|++|. |.-..+ .... ... ..|+ .++.|.+++. +.|++++
T Consensus 204 ~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G~gr~G~~~a~~~~gv~pDi--~tlsK~l~~G~pigav~~ 280 (425)
T PRK07495 204 IEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-GFARTGKLFAMEHHEVAADL--TTMAKGLAGGFPLAAVTG 280 (425)
T ss_pred ECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-cCCcCCCceeecccCCCCCE--EeehhhhcCCccceEEEE
Confidence 86 3334422 2 38899999999999999999975 332111 1100 010 1454 5568988654 3488999
Q ss_pred ecchhhhhcc
Q 023191 271 RKGVKEINKQ 280 (286)
Q Consensus 271 ~~~~~~~~~~ 280 (286)
++++.+..+.
T Consensus 281 ~~~i~~~~~~ 290 (425)
T PRK07495 281 RAEIMDAPGP 290 (425)
T ss_pred cHHHHhccCC
Confidence 9888776654
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.6e-06 Score=75.33 Aligned_cols=205 Identities=14% Similarity=0.037 Sum_probs=105.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~--~~ 134 (286)
-.|++.+++.+.+.... +.... ....+.+.++.+++.+.+.-... ..|.++++.+ |+.++++.. ..
T Consensus 71 ~~p~v~~Ai~~ql~~~~---~~~~~-----~~~~~~~~~lAe~L~~~~p~~~~---~~v~f~~SGsEA~e~AlklAr~~t 139 (441)
T PRK05769 71 AHPKVVKAVKEQAEKFL---HYSLT-----DFYYEPAVELAERLVEIAPGGFE---KKVFFTNSGTESNEAAIKIARYHT 139 (441)
T ss_pred CCHHHHHHHHHHHHhcc---CccCc-----ccCCHHHHHHHHHHHHhCCCCCC---CEEEECCchHHHHHHHHHHHHHHh
Confidence 36888899888776521 11100 01112333466777777642111 1366655444 777666533 23
Q ss_pred CCCeEEeccCCCCcccCccccc------cccc--cccceeeeEEEecccCC-CCCC---------CCHHHHHH-Hhh---
Q 023191 135 PHDRIMALDLPHGGHLSHGYQT------DTKK--ISAVSIFFETMPYRLNE-STGY---------IDYDQLEK-SAT--- 192 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~------~~~~--~~~~g~~~~~v~~~~~~-~~~~---------~d~e~l~~-~i~--- 192 (286)
..++|+.....|.+...-.... ++.. ....| +..++.+... ..+. -+++.+++ .++
T Consensus 140 gr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~ 217 (441)
T PRK05769 140 GRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPG--VIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLV 217 (441)
T ss_pred CCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCC--eEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhcc
Confidence 4567888776665543111000 0000 00111 2223322100 0000 12344555 222
Q ss_pred -hcCCcEEEEc--CCCCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEEEeCCCCCCCC
Q 023191 193 -LFRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKSLRG 262 (286)
Q Consensus 193 -~~~tk~v~i~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~l~g 262 (286)
..++.+|++. .++.|...+ +++|.++|++||+++|+|++|. +|-..... ....+ ..|++++ .|.+++
T Consensus 218 ~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv-~pDivt~--~K~l~~ 294 (441)
T PRK05769 218 PPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGV-EPDIITL--AKAIAG 294 (441)
T ss_pred CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCC-CCCEEEE--cccccC
Confidence 2256777776 333455556 9999999999999999999987 22221111 11111 2588764 598865
Q ss_pred CC-ceEEEEecchhhhh
Q 023191 263 PR-GAMIFFRKGVKEIN 278 (286)
Q Consensus 263 p~-gG~l~~~~~~~~~~ 278 (286)
.. .|++++++++.+..
T Consensus 295 G~p~gav~~~~~i~~~~ 311 (441)
T PRK05769 295 GLPLGAVIGRAELMFLP 311 (441)
T ss_pred CcccEEEEEehhhhhcC
Confidence 43 48888888876543
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.8e-06 Score=75.95 Aligned_cols=206 Identities=12% Similarity=0.043 Sum_probs=108.1
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~--~~ 134 (286)
-+|.+.+++.+.+.+... .... +.. .+.+.++.+.+.+......+ .|.++++.+ |+.++++.. ..
T Consensus 58 ~~p~v~~Ai~~ql~~~~~---~~~~-~~~----~~~~~~la~~L~~~~p~~~~----~v~f~~sGsEAve~AlklAr~~t 125 (443)
T PRK08360 58 NNPRVVKAIKEQTDKLIH---YTPI-YGF----PVEPLLLAEKLIEIAPGDNP----KVSFGLSGSDANDGAIKFARAYT 125 (443)
T ss_pred CCHHHHHHHHHHHHhccC---cccc-ccC----cHHHHHHHHHHHHhCCCCCC----EEEEcCCHHHHHHHHHHHHHHhc
Confidence 478899998887765211 1110 111 12233355777777654322 367655555 777655533 23
Q ss_pred CCCeEEeccCCCCccc-Ccccc-----ccccccc-cceeeeEEEecccCC-CCCC--------CCHHHHHHHhhh----c
Q 023191 135 PHDRIMALDLPHGGHL-SHGYQ-----TDTKKIS-AVSIFFETMPYRLNE-STGY--------IDYDQLEKSATL----F 194 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~-~~~~~-----~~~~~~~-~~g~~~~~v~~~~~~-~~~~--------~d~e~l~~~i~~----~ 194 (286)
...+|+.....|.+.. ..... ..+.... ..+ +..+|++... ..+. -+++.+++.+.. .
T Consensus 126 gr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 203 (443)
T PRK08360 126 KRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSD--VHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAE 203 (443)
T ss_pred CCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCC--cEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCC
Confidence 4567777765555542 11000 0000000 111 2223322100 0010 234556666642 3
Q ss_pred CCcEEEEcCC-C-CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCCCC-cceEEEeCCCCCCCC-CCc
Q 023191 195 RPKLIVAGAS-A-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSPFE-YADVVTTTTHKSLRG-PRG 265 (286)
Q Consensus 195 ~tk~v~i~~~-n-~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~~~-~~D~v~~s~~K~l~g-p~g 265 (286)
++++|++.|. | .|...+ +++|.++|++||+++|+|++|. +|..........+. ..|+++ +.|.+++ .+.
T Consensus 204 ~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiit--lsK~l~~G~pi 281 (443)
T PRK08360 204 GVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIIT--LGKPLGGGLPI 281 (443)
T ss_pred CeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEE--ecccccCCcee
Confidence 6889998743 3 443333 8899999999999999999976 22221110000111 257664 4998864 345
Q ss_pred eEEEEecchhhhhc
Q 023191 266 AMIFFRKGVKEINK 279 (286)
Q Consensus 266 G~l~~~~~~~~~~~ 279 (286)
|+++++.++.+...
T Consensus 282 gav~~~~~i~~~~~ 295 (443)
T PRK08360 282 SATIGRAEIMDSLP 295 (443)
T ss_pred EEEEEcHHHHhhhc
Confidence 89999888776654
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-06 Score=79.05 Aligned_cols=197 Identities=12% Similarity=0.076 Sum_probs=104.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChHHHHHHHHHh---c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTAL---L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~a~~~~l~a~---~ 133 (286)
-+|++.+++.+.+.... ... .++ ..+.+..+.+++.+.+..+.+ .+.++ ||+.|+.++++.. .
T Consensus 99 ~~p~v~~Ai~~ql~~l~---~~~-~~~-----~~~~~~~lae~L~~~~p~~~~----~v~f~~SGsEAve~AlklAr~~t 165 (459)
T PRK11522 99 RNPVVVSAVQNQLAKQP---LHS-QEL-----LDPLRAMLAKTLAALTPGKLK----YSFFCNSGTESVEAALKLAKAYQ 165 (459)
T ss_pred CCHHHHHHHHHHHhhCc---ccc-ccc-----CCHHHHHHHHHHHHhCCCCCC----EEEEeCCchHHHHHHHHHHHHHh
Confidence 37899999988776421 101 111 123333456777776643222 35555 5555777665533 2
Q ss_pred C-C-CCeEEeccCCCCcccCccccc-----cccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh-----cCCcEEEE
Q 023191 134 K-P-HDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVA 201 (286)
Q Consensus 134 ~-~-Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-----~~tk~v~i 201 (286)
. . ..+|+.....|.+...-.... ++....-....+..+| -.|.+++++.+.. .++.+|++
T Consensus 166 ~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~l~~~l~~~~~~~~~iAavIv 237 (459)
T PRK11522 166 SPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVP--------FGNIEAMRTALSECKKTGDDVAAVIL 237 (459)
T ss_pred ccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccC--------CCCHHHHHHHHHHhhccCCcEEEEEE
Confidence 1 2 346787776665543111000 0000000000001111 1267888887752 24567777
Q ss_pred c--CCCCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccC--CCCCCCCcceEEEeCCCCCCCCC--CceEEEE
Q 023191 202 G--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSLRGP--RGAMIFF 270 (286)
Q Consensus 202 ~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l~gp--~gG~l~~ 270 (286)
. .++-|...| ++++.++|++||+++|+|++|. +|-.... .....+ ..|++ ++.|.++|. +-|.+++
T Consensus 238 Epv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv-~PDiv--t~gK~lggG~~Pigav~~ 314 (459)
T PRK11522 238 EPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENV-QPDIL--CLAKALGGGVMPIGATIA 314 (459)
T ss_pred ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCC-CCCEE--EechhhhCCCccceeEEE
Confidence 5 334455555 9999999999999999999985 2211111 011111 26876 558999764 2366666
Q ss_pred ecchhhhh
Q 023191 271 RKGVKEIN 278 (286)
Q Consensus 271 ~~~~~~~~ 278 (286)
++++.+..
T Consensus 315 ~~~i~~~~ 322 (459)
T PRK11522 315 TEEVFSVL 322 (459)
T ss_pred cHHHHHHh
Confidence 66655543
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.2e-06 Score=75.55 Aligned_cols=205 Identities=13% Similarity=0.069 Sum_probs=104.4
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe--CCChHHHHHHHHHh--c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS--LSGSPSNFQVYTAL--L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~--~sG~~a~~~~l~a~--~ 133 (286)
-+|.+.+++.+.+.+.. +.....+ ..+.+..+.+++.+....+.+. ...+.+ .||+.++..+++.. .
T Consensus 52 ~~p~v~~ai~~ql~~~~---~~~~~~~-----~~~~~~~lae~l~~~~~~~~~~-~~~~~f~~~sGseA~e~AlklAr~~ 122 (412)
T TIGR02407 52 NNPKLKQALIDYLADDG---IIHSLDM-----ATEAKREFLETFNEIILKPRGL-DYKVQFPGPTGTNAVESALKLARKV 122 (412)
T ss_pred CCHHHHHHHHHHHhhcc---ceecccc-----CcHHHHHHHHHHHHhccCccCC-CceEEEeCCCchHHHHHHHHHHhhh
Confidence 47899999988775411 1110001 1122333556666653211100 012444 57877777665544 2
Q ss_pred CCCCeEEeccCCCCcccCcccc-----ccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh-----cCCcEEEEcC
Q 023191 134 KPHDRIMALDLPHGGHLSHGYQ-----TDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-----FRPKLIVAGA 203 (286)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-----~~tk~v~i~~ 203 (286)
....+|+.....|.+...-... .++.........+..+|++.......-+++.+++.+.+ .++.+|++.|
T Consensus 123 tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Ep 202 (412)
T TIGR02407 123 TGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILET 202 (412)
T ss_pred cCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEecc
Confidence 3456788887666655311100 01111100000122233221000001246778888863 1457788752
Q ss_pred --CCCCC----ccCHHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEEEeCCCCCCCC-C-CceEEEEec
Q 023191 204 --SAYAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKSLRG-P-RGAMIFFRK 272 (286)
Q Consensus 204 --~n~g~----~~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~l~g-p-~gG~l~~~~ 272 (286)
.+.|. ..-+++|.++|++||+++|.|+++. +|-....+ ....+ ..|++++ .|++++ . +-|++++++
T Consensus 203 i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v-~PDi~~~--~K~lg~~G~pigav~~~~ 279 (412)
T TIGR02407 203 VQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI-EPDIVCL--SKSISGYGLPLALTLIKP 279 (412)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCC-CCCEEEe--chhccCCccceeEEEEch
Confidence 22343 2338899999999999999999976 22211110 11111 2787765 499864 3 238888887
Q ss_pred ch
Q 023191 273 GV 274 (286)
Q Consensus 273 ~~ 274 (286)
++
T Consensus 280 ~~ 281 (412)
T TIGR02407 280 EL 281 (412)
T ss_pred hh
Confidence 76
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-07 Score=79.68 Aligned_cols=203 Identities=12% Similarity=0.152 Sum_probs=127.3
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHH-HHHHhcCCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ-VYTALLKPH 136 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~-~l~a~~~~G 136 (286)
+|+.+++.+.+.+.. |..-....++-+..++. ...+.+...++.+.|+..+ +|.+.+..+++++ ++.+|.+|-
T Consensus 79 mPK~t~~~~~~eLDk-Wak~av~gH~~GkvPW~-~~De~il~l~~~iVGA~e~----EvavmNsLTvNlh~Ll~sFyKPT 152 (465)
T KOG3846|consen 79 MPKSTRNSINAELDK-WAKCAVEGHFKGKVPWV-SIDEPILPLLAPIVGAQEN----EVAVMNSLTVNLHSLLISFYKPT 152 (465)
T ss_pred CchhhHhHHHHHHHH-HHhhhhhccccccccee-ecchhhhhhhhhhccCCch----hhhhHhhhhhHHHHHHHHhcCCc
Confidence 577777777666544 21110011111211221 1223356778889998764 4888888885554 566777775
Q ss_pred C---eEEeccCCCCcccCccccccccccccceeeeEEEecccCC--CCCCCCHHHHHHHhhhcC--CcEEEEcCCC--CC
Q 023191 137 D---RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE--STGYIDYDQLEKSATLFR--PKLIVAGASA--YA 207 (286)
Q Consensus 137 d---~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~~d~e~l~~~i~~~~--tk~v~i~~~n--~g 207 (286)
. +|+.-. .++.+-.|..+. .+++.|..++...+...+ ....+-.+++.+.|..+. ..+|+++... +|
T Consensus 153 ekR~KILlE~---kaFPSDhYAies-Q~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTG 228 (465)
T KOG3846|consen 153 EKRFKILLEK---KAFPSDHYAIES-QCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTG 228 (465)
T ss_pred chhhhhhhcc---CCCCchHHHHHh-hhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEeecceeecc
Confidence 4 455444 333333343333 455666553332222222 223677888888887633 3445555333 67
Q ss_pred CccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCC-CCCc-eEEEEecc
Q 023191 208 RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLR-GPRG-AMIFFRKG 273 (286)
Q Consensus 208 ~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~-gp~g-G~l~~~~~ 273 (286)
...++.+|...-+..|++|=.|-||+.|.++.-++.|+ +|+.+++.+|.++ |+.| |.+++..+
T Consensus 229 Q~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWg---VDFACWCSYKYlnaGaGgIgGlFvHek 293 (465)
T KOG3846|consen 229 QYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWG---VDFACWCSYKYLNAGAGGIGGLFVHEK 293 (465)
T ss_pred cccchhhhhhcccCCCcEechhhhhhhcCCceEEeecC---CceEEEeeecccccCCCccceeeeehh
Confidence 88899999866667799999999999999999999998 9999999999884 4555 77777654
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.9e-06 Score=77.41 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=60.0
Q ss_pred HHHHHHhhh---cCCcEEEEcC--CCCCCccC----HHHHHHHHHhcCCEEEEeccc-cccccccCC--CCCCCCcceEE
Q 023191 185 DQLEKSATL---FRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAH-ISGLVAAGV--IPSPFEYADVV 252 (286)
Q Consensus 185 e~l~~~i~~---~~tk~v~i~~--~n~g~~~~----l~~I~~ia~~~~~~vivD~a~-~~g~~~~~~--~~~~~~~~D~v 252 (286)
+++++++.. .++.+|++.| .+-|...| +++|.++|++||+++|+|++| ++|-..... ....+ ..|++
T Consensus 247 ~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv-~PDiv 325 (504)
T PLN02760 247 DNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNI-KPDLV 325 (504)
T ss_pred HHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCC-CCcEE
Confidence 456766642 2466777763 33455555 999999999999999999998 455443211 11111 26765
Q ss_pred EeCCCCCCCCC--CceEEEEecchhhhhc
Q 023191 253 TTTTHKSLRGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 253 ~~s~~K~l~gp--~gG~l~~~~~~~~~~~ 279 (286)
+ +.|.++|. +.|.+++++++.+..+
T Consensus 326 t--lgK~lggG~~PigAv~~~~~i~d~~~ 352 (504)
T PLN02760 326 S--LAKALSSAYMPIGAVLVSPEISDVIH 352 (504)
T ss_pred E--ecccccCCccccceEeecHHHHhhhh
Confidence 4 58999764 2366888888877664
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-06 Score=86.93 Aligned_cols=163 Identities=19% Similarity=0.111 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-cC--CCCeEEeccCCCCcccCcccccccccccc
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LK--PHDRIMALDLPHGGHLSHGYQTDTKKISA 163 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~-~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (286)
++.-+.--+.+..++++.|.+.. |--..-|++ +..+++++. .. ...+|++++..|+.+..... .-+..
T Consensus 120 QG~Lqal~e~Qtmi~~LtGm~va----NASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~----t~~~~ 191 (954)
T PRK12566 120 QGRLEALLNFQQMTIDLTGLDLA----NASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLR----TRAEG 191 (954)
T ss_pred hHHHHHHHHHHHHHHHHhCchhh----hhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHH----Hhhhc
Confidence 34434334577999999999863 334444655 333333333 22 25789999877766543211 01222
Q ss_pred ceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCC
Q 023191 164 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 242 (286)
Q Consensus 164 ~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~ 242 (286)
.|.+++ .+++++.+++ ++.+|++..+| +|.+.++++|++++|++|.++++ .+ ..+.+.+.
T Consensus 192 ~g~~i~--------------~~~~~~~~~~-~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~~-~~---d~laL~ll 252 (954)
T PRK12566 192 FGFELV--------------VDAVDNLAAH-AVFGALLQYPDTHGEIRDLRPLIDQLHGQQALACV-AA---DLLSLLVL 252 (954)
T ss_pred CCcEEE--------------EcchhhcCCC-CEEEEEEECCCCceEEccHHHHHHHHHHcCCEEEE-Ee---CHHHHhCC
Confidence 332222 1334445555 68889888666 78888999999999999998663 33 23344455
Q ss_pred CCCCC-cceEEEeCCC-----CCCCCCCceEEEEecchhhh
Q 023191 243 PSPFE-YADVVTTTTH-----KSLRGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 243 ~~~~~-~~D~v~~s~~-----K~l~gp~gG~l~~~~~~~~~ 277 (286)
..|.+ |+|++++++. -.|+||..|++.+++++...
T Consensus 253 ~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~ 293 (954)
T PRK12566 253 TPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRA 293 (954)
T ss_pred CChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhh
Confidence 55555 7999998765 46889988999999876543
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-05 Score=74.74 Aligned_cols=207 Identities=16% Similarity=0.054 Sum_probs=107.2
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~--~~ 134 (286)
-.|.+.+++.+.+.... +....++ .+ +.+.++.+.+.+.+..... ..|.+++ |+.|+.++++.. ..
T Consensus 59 ~~p~v~~Ai~~ql~~~~---~~~~~~~-~~----~~~~~lae~L~~~~p~~~~---~~v~f~~SGseA~e~AiklAr~~t 127 (445)
T PRK08593 59 APPRVVEAIKAQADKFI---HYTPAYM-YH----EPLVRLAKKLCELAPGDFE---KRVTFGLSGSDANDGIIKFARAYT 127 (445)
T ss_pred CCHHHHHHHHHHHHhcc---Ccccccc-CC----HHHHHHHHHHHHhCCCCCC---CEEEECCchHHHHHHHHHHHHHhh
Confidence 37899999888776521 1110001 11 2233356777777643221 1477744 555877666533 22
Q ss_pred CCCeEEeccCCCCcccCccccc------ccc--ccccceeeeEEEecccCC-C-CCCCC-------HHHHHHHhhh----
Q 023191 135 PHDRIMALDLPHGGHLSHGYQT------DTK--KISAVSIFFETMPYRLNE-S-TGYID-------YDQLEKSATL---- 193 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~------~~~--~~~~~g~~~~~v~~~~~~-~-~~~~d-------~e~l~~~i~~---- 193 (286)
...+|+..+..|.+...-...+ ++. .....+ +..+|++-.. . ....+ ++++++.+..
T Consensus 128 gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (445)
T PRK08593 128 GRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPG--FVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPA 205 (445)
T ss_pred CCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCC--cEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCC
Confidence 3456887776666543111100 000 000111 2223322100 0 00111 2445544431
Q ss_pred cCCcEEEEcCC--CCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEEEeCCCCCCCCC-
Q 023191 194 FRPKLIVAGAS--AYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKSLRGP- 263 (286)
Q Consensus 194 ~~tk~v~i~~~--n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~l~gp- 263 (286)
.++.+|++.|- +.|...+ +++|.++|++||+++|+|++|. +|-..... ....+ ..|++ ++.|.++|.
T Consensus 206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv-~pDi~--t~gK~l~~G~ 282 (445)
T PRK08593 206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNI-TPDLM--SFGKSLAGGM 282 (445)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCC-CCCEe--eecccccCCc
Confidence 35778888633 2344434 9999999999999999999974 33221100 11111 25766 568988653
Q ss_pred CceEEEEecchhhhhcc
Q 023191 264 RGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 264 ~gG~l~~~~~~~~~~~~ 280 (286)
+.|++++++++.+..+.
T Consensus 283 p~gav~~~~~i~~~~~~ 299 (445)
T PRK08593 283 PMSAIVGRKEIMESLEA 299 (445)
T ss_pred ccEEEEEcHHHHhhhcc
Confidence 45889999888776643
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.7e-06 Score=77.03 Aligned_cols=205 Identities=12% Similarity=0.043 Sum_probs=108.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~--~~ 134 (286)
-.|++.+++.+.+.... +... .+ ..+.+.++.+++.++..-..+ .|.+++ |+.|+.++++.. ..
T Consensus 70 ~~p~v~~Ai~~q~~~~~---~~~~-~~-----~~~~~~~lae~L~~~~p~~~~----~v~f~~SGsEAve~AlklAr~~t 136 (451)
T PRK06062 70 QHPKVVAAIQEQAARLC---TVAP-AH-----ANDARSEAARLIAERAPGDLS----KVFFTNGGADANEHAVRMARLHT 136 (451)
T ss_pred CCHHHHHHHHHHHHhcC---CcCC-cc-----CCHHHHHHHHHHHHhCCCCCC----EEEEcCChHHHHHHHHHHHHHhh
Confidence 37889999888775421 1000 11 112233355777776643222 366655 554777666543 23
Q ss_pred CCCeEEeccCCCCcccCccccc-----ccc-ccccceeeeEEEecccCC-CCC--CCC-------HHHHHHHhhh---cC
Q 023191 135 PHDRIMALDLPHGGHLSHGYQT-----DTK-KISAVSIFFETMPYRLNE-STG--YID-------YDQLEKSATL---FR 195 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~-----~~~-~~~~~g~~~~~v~~~~~~-~~~--~~d-------~e~l~~~i~~---~~ 195 (286)
...+|+.....|.+...-.... ... .....+ +..++.+... ..+ .-| ++++++++.. .+
T Consensus 137 gr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 214 (451)
T PRK06062 137 GRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAG--VVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPST 214 (451)
T ss_pred CCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCC--CEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCc
Confidence 4567888876666553111000 000 000111 1112211100 001 012 6778887753 24
Q ss_pred CcEEEEc--CCCCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccC--CCCCCCCcceEEEeCCCCCCCCC--C
Q 023191 196 PKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSLRGP--R 264 (286)
Q Consensus 196 tk~v~i~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l~gp--~ 264 (286)
+.+|++. ..+-|...+ +++|.++|++||+++|+|++|. +|-.... ....++ ..|+++ +.|.++|. +
T Consensus 215 iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv-~PDi~t--~gK~lggG~~P 291 (451)
T PRK06062 215 IAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV-VPDLIT--FAKGVNSGYVP 291 (451)
T ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCC-CCCeee--echhhhcCCcC
Confidence 6778886 333455555 9999999999999999999986 2211111 011111 267664 58999774 2
Q ss_pred ceEEEEecchhhhhcc
Q 023191 265 GAMIFFRKGVKEINKQ 280 (286)
Q Consensus 265 gG~l~~~~~~~~~~~~ 280 (286)
-|.+++++++.+...+
T Consensus 292 igav~~~~~i~~~~~~ 307 (451)
T PRK06062 292 LGGVAISEAIAATFAD 307 (451)
T ss_pred cEEEEEcHHHHHHhcc
Confidence 3666677787776653
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-07 Score=81.74 Aligned_cols=168 Identities=17% Similarity=0.095 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH--HHHHHHHHhc--CCCCeEEeccCCCCcccCccccccccccccce
Q 023191 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP--SNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 90 ~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~--a~~~~l~a~~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+..|-..+...+-+..|+..-. ..+++..++ .+.+.+.++- ..++.|+.+..+|.+.+- .+..+|
T Consensus 54 ~~~ltn~l~~d~~~~~G~~~~~---~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~k--------ai~~AG 122 (389)
T PF05889_consen 54 LAKLTNSLVLDALRLAGLRSVK---SCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFK--------AIERAG 122 (389)
T ss_dssp HHHHHHHHHHHHHHHTTHTTHC---EEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHH--------HHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCcccc---ceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHH--------HHHhcC
Confidence 3444444445555677885322 355555555 3333555553 567888888876665433 456778
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCC-CCCccC-HHHHHHHHHhcCCEEEEeccccccccc--
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLYD-YERIRKVCNKQKAIMLADMAHISGLVA-- 238 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n-~g~~~~-l~~I~~ia~~~~~~vivD~a~~~g~~~-- 238 (286)
.++++++....++....|++.+++.+++. ++.+.+++ .+- .|+..| +++|+++|++||++.++-+|++.-...
T Consensus 123 l~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~ 202 (389)
T PF05889_consen 123 LEPVVVENVLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCM 202 (389)
T ss_dssp -EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHH
T ss_pred CeEEEeeccCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHH
Confidence 87888875444344467899999988653 23455555 333 666666 999999999999999999997651110
Q ss_pred ----cCCCCCCCCcceEEEeCCCCCCCCCCceEEEEe
Q 023191 239 ----AGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR 271 (286)
Q Consensus 239 ----~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (286)
....... .|+++-|+.|.|-.|-||.++..
T Consensus 203 ~~i~~a~~~GR---vda~vqS~dkNF~VPvGgai~As 236 (389)
T PF05889_consen 203 HLIQQAWRVGR---VDAFVQSTDKNFMVPVGGAIMAS 236 (389)
T ss_dssp HHHHHHHHHST---CSEEEEEHHHHHCEESSHEEEEE
T ss_pred HHHHHHHhcCC---cceeeeecCCCEEecCCCcEEEe
Confidence 0001112 78999999999989988444443
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-05 Score=75.33 Aligned_cols=208 Identities=12% Similarity=0.033 Sum_probs=108.5
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-+|++.+++.+.+.+.. +... .. ....+.+.++.+++.+++..+.+ .|.+ .||+.|+.++++...
T Consensus 65 ~~p~i~~Ai~~q~~~~~---~~~~--~~--~~~~~~~~~lae~L~~~~p~~~~----~v~f~~SGseAve~AlKlar~~~ 133 (460)
T PRK06105 65 SEQRLVEAAARQMKKLP---FYHT--FS--HKSHGPVIDLAEKLVAMAPVPMS----KVFFTNSGSEANDTVVKLVWYYN 133 (460)
T ss_pred CCHHHHHHHHHHHHhCC---Ceec--cc--ccCCHHHHHHHHHHHHhCCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 47899999988876521 1000 00 01112233356777777653332 3665 555558876666531
Q ss_pred -----CCCCeEEeccCCCCcccCccccc-----cccccccceeeeEEEecccCCC---CC-------CCCHHHHHHHhhh
Q 023191 134 -----KPHDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNES---TG-------YIDYDQLEKSATL 193 (286)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~---~~-------~~d~e~l~~~i~~ 193 (286)
....+|+.....|.+...-...+ ++......-..+..++.+.... .+ ...++++++++..
T Consensus 134 ~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 213 (460)
T PRK06105 134 NALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILA 213 (460)
T ss_pred HhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHH
Confidence 12357887776665543111100 0000000000011122210000 00 0124567777742
Q ss_pred ---cCCcEEEEcC--CCCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEEEeCCCCCCC
Q 023191 194 ---FRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKSLR 261 (286)
Q Consensus 194 ---~~tk~v~i~~--~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~l~ 261 (286)
.++.+|++.| .+.|...+ ++++.++|++||+++|.|++|. +|-....+ ....+ ..|++ ++.|.++
T Consensus 214 ~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v-~PDi~--~~gK~lg 290 (460)
T PRK06105 214 EGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI-KPDIL--VMSKQLS 290 (460)
T ss_pred cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCC-CCCee--eeecccc
Confidence 2567888863 23444444 8999999999999999999983 54432111 11111 26766 4579887
Q ss_pred CC--CceEEEEecchhhhhc
Q 023191 262 GP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 262 gp--~gG~l~~~~~~~~~~~ 279 (286)
|. +.|++++++++.+...
T Consensus 291 gG~~P~~av~~~~~i~~~~~ 310 (460)
T PRK06105 291 SSYQPLSAVLMNEKVYDPIA 310 (460)
T ss_pred cCcccceEEEEcHHHHHHHh
Confidence 65 3588888888776543
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.5e-07 Score=69.73 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=50.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHCC--CCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCC
Q 023191 84 YGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHG 147 (286)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~g--~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~ 147 (286)
|+...+..++++++++++.+.+| ++.+. .+|++|+|++ ++..++.++++|||.|++++|.|+
T Consensus 88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~p--d~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 88 FQDYHGLANFRKAIANFMAEARGGRVKFDA--DMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA 152 (153)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCccch--hheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 45557788999999999999988 43222 3699999999 888899999999999999995553
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.6e-06 Score=76.03 Aligned_cols=207 Identities=14% Similarity=0.057 Sum_probs=108.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-.|++.+++.+.+..... .....+ . .+...++.+++.+.+..+.+ .+.+ .||+.|+.++++...
T Consensus 60 ~~p~i~~Ai~~q~~~~~~---~~~~~~-~----~~~~~~la~~L~~~~p~~~~----~v~f~~SGsEAve~AlklAr~~~ 127 (428)
T PRK07986 60 NHPQLNAAMKSQIDAMSH---VMFGGI-T----HPPAIELCRKLVAMTPQPLE----CVFLADSGSVAVEVAMKMALQYW 127 (428)
T ss_pred CCHHHHHHHHHHHhhcCC---cccccc-C----CHHHHHHHHHHHhhCCCCcC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 368899999887765211 000000 1 12233356777777653322 3555 456667776655331
Q ss_pred ----CCCCeEEeccCCCCcccCccccc------cccccccceeeeEEEecccCC--CCC-CCCHHHHHHHhhh--cCCcE
Q 023191 134 ----KPHDRIMALDLPHGGHLSHGYQT------DTKKISAVSIFFETMPYRLNE--STG-YIDYDQLEKSATL--FRPKL 198 (286)
Q Consensus 134 ----~~Gd~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~v~~~~~~--~~~-~~d~e~l~~~i~~--~~tk~ 198 (286)
....+|+.....|.+...-.... ++....-.-.....++.+... +.+ .-|++++++.+.. .+..+
T Consensus 128 ~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaa 207 (428)
T PRK07986 128 QAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAA 207 (428)
T ss_pred HhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEE
Confidence 23467888887666532110000 000000000001112221110 001 1256788887753 14567
Q ss_pred EEEcC--CCCC-C----ccCHHHHHHHHHhcCCEEEEeccccccccccC-C---CCCCCCcceEEEeCCCCCCCCC--Cc
Q 023191 199 IVAGA--SAYA-R----LYDYERIRKVCNKQKAIMLADMAHISGLVAAG-V---IPSPFEYADVVTTTTHKSLRGP--RG 265 (286)
Q Consensus 199 v~i~~--~n~g-~----~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~---~~~~~~~~D~v~~s~~K~l~gp--~g 265 (286)
|++.| +..| . ...+++|.++|++||+++|+|++| .|.-..+ . ....+ ..|+++ +.|.++|. ..
T Consensus 208 vi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG~GrtG~~fa~~~~gv-~PDi~t--~gK~l~gG~~p~ 283 (428)
T PRK07986 208 VILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TGFGRTGKLFACEHAGI-APDILC--LGKALTGGTMTL 283 (428)
T ss_pred EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCCeeeecccCC-CCCEEE--echhhhCCcccC
Confidence 77764 3333 2 234899999999999999999998 4431111 1 11111 267775 68988654 23
Q ss_pred eEEEEecchhhhhcc
Q 023191 266 AMIFFRKGVKEINKQ 280 (286)
Q Consensus 266 G~l~~~~~~~~~~~~ 280 (286)
|++++++++.+..+.
T Consensus 284 ~av~~~~~i~~~~~~ 298 (428)
T PRK07986 284 SATLTTREVAETISN 298 (428)
T ss_pred cchhchHHHHHHhhc
Confidence 777888888777654
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-06 Score=76.09 Aligned_cols=207 Identities=12% Similarity=0.065 Sum_probs=106.4
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc----
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL---- 133 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~---- 133 (286)
+|.+.+++.+.+.... +... . ....+...++.+++.+.++-.. ..+.++++.+ |+..++....
T Consensus 34 ~p~i~~ai~~~~~~~~---~~~~---~--~~~~~~~~~la~~L~~~~p~~~----~~v~f~~sGseAve~Alkla~~~~~ 101 (339)
T PF00202_consen 34 HPEIAEAIAEQANKLN---YVSF---S--GFTHPEAAELAEKLAELFPGGL----DRVFFANSGSEAVEAALKLARQYHN 101 (339)
T ss_dssp -HHHHHHHHHHHHHCS---SCST---T--TSEEHHHHHHHHHHHHHSSTTE----EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHhhhcc---cccc---c--ceeccchhhhhhhhhhcccccc----ceeeeccCchHHHHHHHHHhhcccc
Confidence 6888888887765421 1000 0 0111223346688888873322 2466655555 7776665444
Q ss_pred ----CCCCeEEeccCCCCcccCcccc-----ccccccccceeeeEEEecccCCCC---CCCCHHHHHHHh---hhcCCcE
Q 023191 134 ----KPHDRIMALDLPHGGHLSHGYQ-----TDTKKISAVSIFFETMPYRLNEST---GYIDYDQLEKSA---TLFRPKL 198 (286)
Q Consensus 134 ----~~Gd~Vl~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~v~~~~~~~~---~~~d~e~l~~~i---~~~~tk~ 198 (286)
....+|+.+...|.+...-... .++.........+..+|++.. .. ..-..+++++.+ ...+..+
T Consensus 102 ~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iaa 180 (339)
T PF00202_consen 102 KRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDP-AADEEEQACLNALEELIAALNADEIAA 180 (339)
T ss_dssp HTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCH-HHHHHHHHHHHHHHHHHHHHHGGGEEE
T ss_pred cccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCcc-chhhhHHHHHHHHHHHHHhhcCCcEEE
Confidence 2446888888777654311111 011110000011223432210 00 000011122222 2336678
Q ss_pred EEEcCCC--CCC----ccCHHHHHHHHHhcCCEEEEeccccccccccCCC---CCCCCcceEEEeCCCCCCCCCCc-eEE
Q 023191 199 IVAGASA--YAR----LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI---PSPFEYADVVTTTTHKSLRGPRG-AMI 268 (286)
Q Consensus 199 v~i~~~n--~g~----~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~---~~~~~~~D~v~~s~~K~l~gp~g-G~l 268 (286)
|++.|-. .|. ..-+++|.++|++||+++|+|+.+..-....... ...+ ..|+++++ |.++|.-. |.+
T Consensus 181 vivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv-~PDiv~~g--K~l~gG~p~sav 257 (339)
T PF00202_consen 181 VIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGV-DPDIVTFG--KGLGGGLPISAV 257 (339)
T ss_dssp EEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTS-SSSEEEEE--GGGGTTSSEEEE
T ss_pred EEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccc-cCcccccc--cchhhhhhcccc
Confidence 8886433 342 2238999999999999999999976221111111 0111 27999886 99966544 999
Q ss_pred EEecchhhhhccC
Q 023191 269 FFRKGVKEINKQG 281 (286)
Q Consensus 269 ~~~~~~~~~~~~~ 281 (286)
++++++.+....+
T Consensus 258 ~~~~~i~~~~~~~ 270 (339)
T PF00202_consen 258 LGSEEIMEAFQPG 270 (339)
T ss_dssp EEEHHHHTTSCTT
T ss_pred cccchhhcccccc
Confidence 9999988777543
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-05 Score=73.64 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=107.5
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~--~~ 134 (286)
-.|.+.+++.+.+......+ ..+ +.+.++.+++.+.+. ..+ .+.+++ |+.|+..+++.. ..
T Consensus 70 ~~p~v~~ai~~q~~~~~~~~-------~~~----~~~~~la~~l~~~~p-~~~----~v~f~~sGseA~e~AlklAr~~t 133 (428)
T PRK12389 70 AHPHITKAITEAAENGVLYG-------TPT----ELEIEFAKMLKEAIP-SLE----KVRFVNSGTEAVMTTIRVARAYT 133 (428)
T ss_pred CCHHHHHHHHHHHHhCCccC-------CCC----HHHHHHHHHHHHhCC-CCc----EEEEeCCHHHHHHHHHHHHHHhh
Confidence 37889999988776521101 111 222335567766654 222 366655 554777666533 23
Q ss_pred CCCeEEeccCCCCcccCccccc-ccccc-----ccceee----eEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc
Q 023191 135 PHDRIMALDLPHGGHLSHGYQT-DTKKI-----SAVSIF----FETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG 202 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~-~~~~~-----~~~g~~----~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~ 202 (286)
...+|+.....|.+........ ..... ...+.. .....++ ..|++.+++.+.++ ++.+|++.
T Consensus 134 gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l~~~~~~vaavi~E 207 (428)
T PRK12389 134 GRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVP------FNDIEALKEALDKWGDEVAAVLVE 207 (428)
T ss_pred CCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcC------CCCHHHHHHHHHhcCCcEEEEEEe
Confidence 4567888776666643211100 00000 000000 0001111 12789998888642 46677776
Q ss_pred --CCCCCCccC----HHHHHHHHHhcCCEEEEeccccccccccCC-C-CCCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 203 --ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV-I-PSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 203 --~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~-~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
..+.|...| +++|.++|++||+++|.|++|...-..... . ...+ ..|++ ++.|.++|... |.++++++
T Consensus 208 Pv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv-~PDiv--t~gK~lggG~Pi~av~~~~~ 284 (428)
T PRK12389 208 PIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGV-EPDLT--ALGKIIGGGLPIGAYGGRKD 284 (428)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCC-CCCee--eechhhcCCCceeEEeEHHH
Confidence 333455555 999999999999999999998632111010 1 0111 26775 55898866433 66788888
Q ss_pred hhhhhc
Q 023191 274 VKEINK 279 (286)
Q Consensus 274 ~~~~~~ 279 (286)
+.+..+
T Consensus 285 i~~~~~ 290 (428)
T PRK12389 285 IMEQVA 290 (428)
T ss_pred HHhhhc
Confidence 877664
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=73.64 Aligned_cols=209 Identities=13% Similarity=0.092 Sum_probs=107.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC-CCCCcceeEEeCCChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~v~~~sG~~a~~~~l~a~--~~ 134 (286)
-.|++.+++.+.+.+.....+. . ..+ +...++.+++.+.+.. ..+. -.+.+||+.|+..+++.. ..
T Consensus 57 ~~p~v~~ai~~ql~~~~~~~~~---~-~~~----~~~~~la~~l~~~~p~~~~~~---~~f~~sGseA~e~AlklAr~~t 125 (421)
T PRK06777 57 RHPKVVAAVRQQLDQFTHTAYQ---I-VPY----ASYVTLAERINALAPIDGPAK---TAFFTTGAEAVENAVKIARAYT 125 (421)
T ss_pred CCHHHHHHHHHHHhhccccccc---c-cCC----hHHHHHHHHHHHhCCCCCCce---EEEeCCcHHHHHHHHHHHHHhh
Confidence 3788888888877652110110 0 111 1222355677776642 1222 244566666777655533 23
Q ss_pred CCCeEEeccCCCCcccCccccc------cccccccceeeeEEEecccCCC--CCCCCHHHHHHHhhh----cCCcEEEEc
Q 023191 135 PHDRIMALDLPHGGHLSHGYQT------DTKKISAVSIFFETMPYRLNES--TGYIDYDQLEKSATL----FRPKLIVAG 202 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~v~~~~~~~--~~~~d~e~l~~~i~~----~~tk~v~i~ 202 (286)
...+|+.....|.+...-...+ ++....-.-..+..++++.... ...-+++.+++.+.. .++.+|++.
T Consensus 126 gr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~E 205 (421)
T PRK06777 126 GRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLE 205 (421)
T ss_pred CCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence 4456888876666553111100 0000000000011122221000 011246677877752 256778886
Q ss_pred CC--CCC-CccC---HHHHHHHHHhcCCEEEEeccccccccccCC-CC-CCCC-cceEEEeCCCCCCCC-CCceEEEEec
Q 023191 203 AS--AYA-RLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGV-IP-SPFE-YADVVTTTTHKSLRG-PRGAMIFFRK 272 (286)
Q Consensus 203 ~~--n~g-~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~-~~~~-~~D~v~~s~~K~l~g-p~gG~l~~~~ 272 (286)
|- +.| ...+ +++|.++|++||+++|+|++|. |....+. .. ..+. ..|++ ++.|.+++ .+.|++++++
T Consensus 206 pv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~pDiv--~~sK~l~~G~pigav~~~~ 282 (421)
T PRK06777 206 PIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-GFARTGKLFAMEYYDVKPDLI--TMAKSLGGGMPISAVVGRA 282 (421)
T ss_pred CccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCccCCchhhhhhcCCCCCEE--eeehhhcCCCceEEEEEcH
Confidence 32 234 2334 8999999999999999999976 4321121 11 0011 26765 57998853 3459999998
Q ss_pred chhhhhcc
Q 023191 273 GVKEINKQ 280 (286)
Q Consensus 273 ~~~~~~~~ 280 (286)
++.+...+
T Consensus 283 ~i~~~~~~ 290 (421)
T PRK06777 283 EVMDAPAP 290 (421)
T ss_pred HHHhccCC
Confidence 87766543
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-05 Score=73.77 Aligned_cols=208 Identities=13% Similarity=0.050 Sum_probs=109.4
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-+|.+.+++.+.+.. .. +.....+.. + .. ..+.+++.+.++...+ .+.+ .+|+.++..+++...
T Consensus 62 ~~p~v~~ai~~~~~~-~~--~~~~~~~~~-~--~~--~~la~~l~~~~~~~~~----~v~f~~sGseA~e~AlklAr~~~ 129 (427)
T TIGR00508 62 NHPRLNAAAQKQIDK-MS--HVMFGGFTH-K--PA--IELCQKLVKMTPNALD----CVFLADSGSVAVEVALKMALQYW 129 (427)
T ss_pred CCHHHHHHHHHHHHh-cC--CccccccCC-H--HH--HHHHHHHHhhCCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 478889888887754 21 100000111 1 12 2255777777653322 3555 456667766555332
Q ss_pred ----CC-CCeEEeccCCCCcccCccccc-cccc-c-c-ccee--eeEEEecccCCCC--C-CCCHHHHHHHhhhc--CCc
Q 023191 134 ----KP-HDRIMALDLPHGGHLSHGYQT-DTKK-I-S-AVSI--FFETMPYRLNEST--G-YIDYDQLEKSATLF--RPK 197 (286)
Q Consensus 134 ----~~-Gd~Vl~~~~~~~~~~~~~~~~-~~~~-~-~-~~g~--~~~~v~~~~~~~~--~-~~d~e~l~~~i~~~--~tk 197 (286)
.+ ..+|+.....|.+...-...+ .... . . +.+. ....++.+...-. + .-|++++++.+... +..
T Consensus 130 ~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~va 209 (427)
T TIGR00508 130 QAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIA 209 (427)
T ss_pred HhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEE
Confidence 12 367888887776653111100 0000 0 0 0000 0111221111000 0 12567777777532 456
Q ss_pred EEEEcC--CCCC-----CccCHHHHHHHHHhcCCEEEEeccccccccccCC--CCCCCC-cceEEEeCCCCCCCCC--Cc
Q 023191 198 LIVAGA--SAYA-----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV--IPSPFE-YADVVTTTTHKSLRGP--RG 265 (286)
Q Consensus 198 ~v~i~~--~n~g-----~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~--~~~~~~-~~D~v~~s~~K~l~gp--~g 265 (286)
+|++.| ++.| ...++++|.++|++||+++|+|++| .|.-..+. ....+. ..|+++ +.|.|+|. ..
T Consensus 210 avivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~gG~~p~ 286 (427)
T TIGR00508 210 AVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TGFGRTGKLFACEHAGVVPDILC--VGKALTGGYMTL 286 (427)
T ss_pred EEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCCcCCccchhhhcCCCCCEEE--echhhhcCcccc
Confidence 777764 4444 3456999999999999999999998 44311111 010111 368776 59998654 24
Q ss_pred eEEEEecchhhhhcc
Q 023191 266 AMIFFRKGVKEINKQ 280 (286)
Q Consensus 266 G~l~~~~~~~~~~~~ 280 (286)
+.+++++++.+..+.
T Consensus 287 ~a~~~~~~~~~~~~~ 301 (427)
T TIGR00508 287 SATVTTDKVAQTISS 301 (427)
T ss_pred eEEEEcHHHHHHHhc
Confidence 778888888777664
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=71.60 Aligned_cols=207 Identities=17% Similarity=0.129 Sum_probs=105.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~a~~~~l~a~~--- 133 (286)
-.|.+.+++.+.+.+.. +.....+. . +....+.+++.+.+....+ .|.++ ||+.|+..++....
T Consensus 66 ~~p~v~~ai~~ql~~l~---~~~~~~~~-~----~~~~~la~~L~~~~p~~~~----~v~f~~sGseAve~AlklAr~~~ 133 (445)
T PRK09221 66 GRPEIVEAVARQAATLD---YAPAFQMG-H----PLAFELAERLAELAPGGLD----HVFFTNSGSESVDTALKIALAYH 133 (445)
T ss_pred CCHHHHHHHHHHHHhcc---CccccccC-C----HHHHHHHHHHHHhCCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 47888888888775421 10000011 1 2223355777777643222 35554 45557776555331
Q ss_pred ---C--CCCeEEeccCCCCcccCccc-----cccccccccceeeeEEEecccCCC--CCC--------CCHHHHHHHhhh
Q 023191 134 ---K--PHDRIMALDLPHGGHLSHGY-----QTDTKKISAVSIFFETMPYRLNES--TGY--------IDYDQLEKSATL 193 (286)
Q Consensus 134 ---~--~Gd~Vl~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~v~~~~~~~--~~~--------~d~e~l~~~i~~ 193 (286)
. ...+|+.....|.+...-.. ..++....-....+..+|.+.+.. .+. -..+++++.+..
T Consensus 134 ~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 213 (445)
T PRK09221 134 RARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVAL 213 (445)
T ss_pred HhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHh
Confidence 1 13578888776665421000 000100000000112222221000 010 114577777753
Q ss_pred ---cCCcEEEEc--CCCCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEEEeCCCCCCC
Q 023191 194 ---FRPKLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKSLR 261 (286)
Q Consensus 194 ---~~tk~v~i~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~l~ 261 (286)
.++.+|++. .++.|...+ +++|.++|++||+++|+|++|. +|-..... ....+ ..|++ ++.|.++
T Consensus 214 ~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv-~PDi~--~~gK~l~ 290 (445)
T PRK09221 214 HDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGV-TPDII--TFAKGLT 290 (445)
T ss_pred cCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCC-CCCEE--Eeccccc
Confidence 246678886 333555555 9999999999999999999984 33221111 11111 25765 4578876
Q ss_pred CC--CceEEEEecchhhhhc
Q 023191 262 GP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 262 gp--~gG~l~~~~~~~~~~~ 279 (286)
|. +.|.+++++++.+...
T Consensus 291 gG~~Pi~av~~~~~i~~~~~ 310 (445)
T PRK09221 291 NGAIPMGAVIASDEIYDAFM 310 (445)
T ss_pred cCcccceeeEEcHHHHHhhc
Confidence 43 3577788888776554
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-05 Score=72.63 Aligned_cols=206 Identities=16% Similarity=0.034 Sum_probs=106.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-.|++.+++.+.+.... +... +.. ...+.+..+.+.+.+....+.+ .+.+ .||+.|+.++++...
T Consensus 67 ~~p~v~~Av~~q~~~~~---~~~~--~~~--~~~~~~~~lAe~L~~~~p~~~~----~v~f~~sGSEAve~AlKlAr~~~ 135 (461)
T PRK07482 67 GRTEVAEAIAEQAKELA---YYHT--YVG--HGTEASITLSKRIIDRAPAGMS----KVYYGLSGSDANETQIKLVWYYN 135 (461)
T ss_pred CCHHHHHHHHHHHHhcC---cccc--ccc--cCCHHHHHHHHHHHHhCCCCcC----EEEEeCchHHHHHHHHHHHHHHH
Confidence 37899999988776521 1000 000 1112333366777776643332 3655 455557776655431
Q ss_pred ---C-C-CCeEEeccCCCCcccCcccc-----cccccc--ccceeeeEEEecccC-C-C--C-----C-CCCHHHHHHHh
Q 023191 134 ---K-P-HDRIMALDLPHGGHLSHGYQ-----TDTKKI--SAVSIFFETMPYRLN-E-S--T-----G-YIDYDQLEKSA 191 (286)
Q Consensus 134 ---~-~-Gd~Vl~~~~~~~~~~~~~~~-----~~~~~~--~~~g~~~~~v~~~~~-~-~--~-----~-~~d~e~l~~~i 191 (286)
. + ..+|+.....|.+...-... .++... ...+ +..++.+.. . . . + .-+++.+++.+
T Consensus 136 ~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (461)
T PRK07482 136 NVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIAR--VLHTEAPHYYRRADAGMSEEQFSAYCADELEELI 213 (461)
T ss_pred HhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCC--CEEcCCCccccccccCCCHHHHHHHHHHHHHHHH
Confidence 1 2 35788887666664210000 000000 0011 111221110 0 0 0 0 11467788877
Q ss_pred hh---cCCcEEEEcCCC--CCCc----cCHHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEEEeCCCCC
Q 023191 192 TL---FRPKLIVAGASA--YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKS 259 (286)
Q Consensus 192 ~~---~~tk~v~i~~~n--~g~~----~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~ 259 (286)
.. .++.+|++.|-. .|.. .-+++|.++|++||+++|.|+.+. +|-..... ...++ ..|++++ .|.
T Consensus 214 ~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKg 290 (461)
T PRK07482 214 LAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGI-EPDLITV--AKG 290 (461)
T ss_pred HhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCC-CCCEEEE--ccc
Confidence 42 256788886332 3322 238899999999999999999975 22221111 11111 2788875 798
Q ss_pred CCCCC--ceEEEEecchhhhhc
Q 023191 260 LRGPR--GAMIFFRKGVKEINK 279 (286)
Q Consensus 260 l~gp~--gG~l~~~~~~~~~~~ 279 (286)
++|.. -|.+++++++.+...
T Consensus 291 l~gG~~Pi~av~~~~~i~~~~~ 312 (461)
T PRK07482 291 LTSAYAPLSGSIVGEKVWDVLE 312 (461)
T ss_pred cccCccccceeeecHHHHHHHh
Confidence 86643 377777777766543
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.5e-06 Score=71.62 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHhhhc---CCcEEEEc-CCC--CC---CccCHHHHHHHHHhcCCEEEEeccccccccc-c-----CCCCC
Q 023191 180 GYIDYDQLEKSATLF---RPKLIVAG-ASA--YA---RLYDYERIRKVCNKQKAIMLADMAHISGLVA-A-----GVIPS 244 (286)
Q Consensus 180 ~~~d~e~l~~~i~~~---~tk~v~i~-~~n--~g---~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~-~-----~~~~~ 244 (286)
+.+|++.|+++|++. +.-.|+++ ..| -| +..+++++.+||++|++.++.|.+..+-.-. . +-..+
T Consensus 167 Gd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~ 246 (471)
T COG3033 167 GNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDW 246 (471)
T ss_pred CccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccc
Confidence 579999999999763 45566665 344 23 3457889999999999999999996643221 1 11111
Q ss_pred C--------CCcceEEEeCCCCCCCCCCceEEEEecc-hhhhhc
Q 023191 245 P--------FEYADVVTTTTHKSLRGPRGAMIFFRKG-VKEINK 279 (286)
Q Consensus 245 ~--------~~~~D~v~~s~~K~l~gp~gG~l~~~~~-~~~~~~ 279 (286)
. +.++|-++.|+-|--..+-||+|+.+++ +.|...
T Consensus 247 sI~~IarEm~sYaD~~~mS~KKD~lvnmGGfl~~~D~~~fDvy~ 290 (471)
T COG3033 247 SIEEIAREMYSYADGCTMSAKKDGLVNMGGFLCFKDDSFFDVYE 290 (471)
T ss_pred cHHHHHHHHHhhhhhheeeccccceeccccEEEecCccHHHHHH
Confidence 1 1358999999999877889999999986 445544
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.9e-05 Score=72.46 Aligned_cols=203 Identities=13% Similarity=0.050 Sum_probs=105.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~a~~~~l~a~--~~ 134 (286)
-.|++.+++.+.+.+.. +.... +..+ +...++.+.+.+......+ .|.++ ||+.|+.++++.. ..
T Consensus 70 ~~p~i~~Ai~~ql~~~~---~~~~~-~~~~----~~~~~lae~L~~~~p~~~~----~v~f~~SGsEA~e~AlklAr~~t 137 (457)
T PRK05639 70 SHPKLVKAVQEQVALIQ---HSMIG-YTHS----ERAIRVAEKLAEISPIENP----KVLFGLSGSDAVDMAIKVSKFST 137 (457)
T ss_pred CCHHHHHHHHHHHHhcc---ccccC-ccCC----HHHHHHHHHHHhhCCCCcC----EEEEeCchHHHHHHHHHHHHHhc
Confidence 47889999888776421 11100 1111 2222355777776653322 35555 4555777655543 33
Q ss_pred CCCeEEeccCCCCcccCcccc------ccccccccceeeeEEEecccCCC-CCC----CCH--------HHHHHHhh---
Q 023191 135 PHDRIMALDLPHGGHLSHGYQ------TDTKKISAVSIFFETMPYRLNES-TGY----IDY--------DQLEKSAT--- 192 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~~~~~-~~~----~d~--------e~l~~~i~--- 192 (286)
...+|+.....|.+...-... .++....-.-..+..+|++.... .+. -|. +.+++.+.
T Consensus 138 gr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 217 (457)
T PRK05639 138 RRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHV 217 (457)
T ss_pred CCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 456788777666654311000 01111000000122333321000 000 122 23444432
Q ss_pred --hcCCcEEEEcCCC--CCCcc----CHHHHHHHHHhcCCEEEEeccccccccccC-C---CCCCCCcceEEEeCCCCCC
Q 023191 193 --LFRPKLIVAGASA--YARLY----DYERIRKVCNKQKAIMLADMAHISGLVAAG-V---IPSPFEYADVVTTTTHKSL 260 (286)
Q Consensus 193 --~~~tk~v~i~~~n--~g~~~----~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~---~~~~~~~~D~v~~s~~K~l 260 (286)
..++.+|++.|-. -|... -+++|.++|++||+++|.|++|. |.--.+ . ....+ ..|+++ +.|.+
T Consensus 218 ~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv-~PDiv~--~gK~l 293 (457)
T PRK05639 218 VPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT-GIGRTGKWFASEWFEV-KPDLII--FGKGV 293 (457)
T ss_pred cCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcCchHHHHHhcCC-CCCEEE--echhh
Confidence 2367888886322 33222 38899999999999999999986 431111 1 11111 278888 68999
Q ss_pred CCCCc-eEEEEecchhh
Q 023191 261 RGPRG-AMIFFRKGVKE 276 (286)
Q Consensus 261 ~gp~g-G~l~~~~~~~~ 276 (286)
+|... |++++++++.+
T Consensus 294 ~gG~pi~av~~~~~i~~ 310 (457)
T PRK05639 294 ASGMGLSGVIGRKELMD 310 (457)
T ss_pred cCCCcceeEEehHHHHh
Confidence 76556 89999988776
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.7e-05 Score=71.07 Aligned_cols=206 Identities=11% Similarity=0.032 Sum_probs=105.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC-CCCCcceeEEe-CCChHHHHHHHHHh--c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQS-LSGSPSNFQVYTAL--L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~v~~-~sG~~a~~~~l~a~--~ 133 (286)
-.|++.+++.+.+......++. . ... +.+.++.+++.+.... ..+ .+.+ +||+.|+.++++.. .
T Consensus 50 ~~p~v~~a~~~ql~~~~~~~~~---~-~~~----~~~~~la~~l~~~~p~~~~~----~v~f~~sGseA~e~AlklAr~~ 117 (420)
T TIGR00700 50 SHPRVVDAVRTQVAEFTHTCFM---V-TPY----EGYVALAEKLNRIAPGSGPK----KSVFFNSGAEAVENAVKIARSY 117 (420)
T ss_pred CCHHHHHHHHHHHHhccCcccc---c-cCC----hHHHHHHHHHHHhCCCCCCC----EEEEeCCcHHHHHHHHHHHHHh
Confidence 3788999988877652111110 0 111 1222355667776632 122 2444 55666777655533 2
Q ss_pred CCCCeEEeccCCCCcccCccccc------cccccccceeeeEEEecccCCC--------CCCCCHHHHHHHhh----hcC
Q 023191 134 KPHDRIMALDLPHGGHLSHGYQT------DTKKISAVSIFFETMPYRLNES--------TGYIDYDQLEKSAT----LFR 195 (286)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~v~~~~~~~--------~~~~d~e~l~~~i~----~~~ 195 (286)
....+|+.....|.+...-...+ +..+..-.-.....+|++.... .+.-+++.+++.+. ..+
T Consensus 118 tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (420)
T TIGR00700 118 TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANN 197 (420)
T ss_pred cCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCc
Confidence 34456887776665543111100 0101000000112233221000 00012556776653 235
Q ss_pred CcEEEEcC--CCCCCccC----HHHHHHHHHhcCCEEEEeccccccccccC-C---CCCCCCcceEEEeCCCCCCCC-CC
Q 023191 196 PKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAG-V---IPSPFEYADVVTTTTHKSLRG-PR 264 (286)
Q Consensus 196 tk~v~i~~--~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~---~~~~~~~~D~v~~s~~K~l~g-p~ 264 (286)
+.+|++.| .+.|...+ +++|.++|++||+++|.|+++. |....+ . .... ...|+++ +.|.+++ .+
T Consensus 198 iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-g~gr~g~~~a~~~~~-~~pDi~~--lsK~l~~G~p 273 (420)
T TIGR00700 198 VAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQT-GFARTGAMFACEHEG-PEPDLIT--TAKSLADGLP 273 (420)
T ss_pred EEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCcccchhHHHhhcC-CCCCEEE--eeccccCCcc
Confidence 67888863 33453333 8999999999999999999965 221111 1 1111 1267655 7998853 34
Q ss_pred ceEEEEecchhhhhc
Q 023191 265 GAMIFFRKGVKEINK 279 (286)
Q Consensus 265 gG~l~~~~~~~~~~~ 279 (286)
.|++++++++.+...
T Consensus 274 ig~v~~~~~i~~~~~ 288 (420)
T TIGR00700 274 LSGVTGRAEIMDAPA 288 (420)
T ss_pred eEEEEecHHHHhhcC
Confidence 499999988876654
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.8e-05 Score=70.91 Aligned_cols=205 Identities=7% Similarity=-0.031 Sum_probs=109.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~a~~~~l~a~~--- 133 (286)
-.|++.+++.+.+.+.. +.....+. .+...++.+++.+.++...+ .+.++ ||+.|+.++++...
T Consensus 71 ~~p~v~~Ai~~ql~~~~---~~~~~~~~-----~~~~~~lAe~L~~~~p~~~~----~v~f~~sGseAve~AlKlA~~~~ 138 (453)
T PRK06943 71 ANPRINAALKDQLDTLE---HAMLAGCT-----HEPAIELAERLAALTGGTLG----HAFFASDGASAVEIALKMSFHAW 138 (453)
T ss_pred CCHHHHHHHHHHHHhcC---CccccccC-----CHHHHHHHHHHHHhCCCCCC----EEEEeCCCHHHHHHHHHHHHHHH
Confidence 47889999888776521 10000011 12233366777777654322 36665 56657776665431
Q ss_pred -----CCCCeEEeccCCCCcccCccccc-----cccc--cccceeeeEEEecccCCC-CC--------CCCHHHHHHHhh
Q 023191 134 -----KPHDRIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNES-TG--------YIDYDQLEKSAT 192 (286)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~~-~~--------~~d~e~l~~~i~ 192 (286)
....+|+.....|.+...-...+ ++.. ..+.+ +..++.+.... .. .-+++++++.+.
T Consensus 139 ~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~ 216 (453)
T PRK06943 139 RNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRH--AHVVASPDARGARPGETAADVAARALADVRRLFA 216 (453)
T ss_pred HHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCC--CEEECCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 12467888887776643100000 0000 00011 11232221100 00 113577777775
Q ss_pred h--cCCcEEEEcC--CC-CCC----ccCHHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEEEeCCCCCC
Q 023191 193 L--FRPKLIVAGA--SA-YAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKSL 260 (286)
Q Consensus 193 ~--~~tk~v~i~~--~n-~g~----~~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~l 260 (286)
. .++.+|++.| .. .|. ..-++++.++|++||+++|.|+.+. +|-..... ....+ ..|++++ .|.+
T Consensus 217 ~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv-~PDivt~--gKgl 293 (453)
T PRK06943 217 ERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGV-WPDFLCL--SKGI 293 (453)
T ss_pred hCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCC-CCCeEee--ehhh
Confidence 3 2577888876 23 332 2238899999999999999999974 33221100 11111 2788876 7888
Q ss_pred CCCC--ceEEEEecchhhhhc
Q 023191 261 RGPR--GAMIFFRKGVKEINK 279 (286)
Q Consensus 261 ~gp~--gG~l~~~~~~~~~~~ 279 (286)
+|.. -|.+++++++.+...
T Consensus 294 ~gG~~Pi~av~~~~ei~~~~~ 314 (453)
T PRK06943 294 SGGYLPLSLVLSRDAIFAAFY 314 (453)
T ss_pred ccCcccceEEEEcHHHHHhhc
Confidence 7652 488888888776554
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.9e-05 Score=76.18 Aligned_cols=206 Identities=9% Similarity=-0.010 Sum_probs=106.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh--cCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LKP 135 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~--~~~ 135 (286)
-.|+|.+++.+.+.... .. .+ + .. +...++.+++.+.+.-..+. -.++.||+.|+.++++.. ...
T Consensus 600 ~hp~v~~Ai~~q~~~l~---~~-~~-~-~~----~~~~elae~L~~~~p~~~~~---v~f~~SGsEA~e~AlklAr~~tg 666 (972)
T PRK06149 600 GHPRLAAAAARQWSLLN---TN-SR-F-HY----AAVAEFSERLAALAPDGLDT---VFLVNSGSEANDLAIRLAWAASG 666 (972)
T ss_pred CCHHHHHHHHHHHHhcc---cc-cc-c-cC----HHHHHHHHHHHHhCCCCcCE---EEEeCCchHHHHHHHHHHHHhcC
Confidence 37899999987765421 11 11 1 11 22333557777776322222 244566766887766622 233
Q ss_pred CCeEEeccCCCCcccCccc----ccc-cccc--ccceeeeEEEecccC-CCCCC-CC-----HHHHHHHhh-----hcCC
Q 023191 136 HDRIMALDLPHGGHLSHGY----QTD-TKKI--SAVSIFFETMPYRLN-ESTGY-ID-----YDQLEKSAT-----LFRP 196 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~----~~~-~~~~--~~~g~~~~~v~~~~~-~~~~~-~d-----~e~l~~~i~-----~~~t 196 (286)
...|+..+..|.+...-.. ... .... ...+ .+..++.+.. ...+. .| .+++++.+. ..++
T Consensus 667 r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~-~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 745 (972)
T PRK06149 667 RRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPD-WVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGL 745 (972)
T ss_pred CCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCC-CeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCce
Confidence 4567777766654321000 000 0000 0000 0122221100 00011 11 234444332 1246
Q ss_pred cEEEEc--CCCCCCccC----HHHHHHHHHhcCCEEEEeccc-cccccccCC---CCCCCCcceEEEeCCCCCCCCCCc-
Q 023191 197 KLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAH-ISGLVAAGV---IPSPFEYADVVTTTTHKSLRGPRG- 265 (286)
Q Consensus 197 k~v~i~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~-~~g~~~~~~---~~~~~~~~D~v~~s~~K~l~gp~g- 265 (286)
.+|++. .++.|...+ +++|.++|++||+++|+|++| ++|-....+ ...++ ..|++ ++.|.++|...
T Consensus 746 AavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv-~PDiv--t~gK~lg~G~Pl 822 (972)
T PRK06149 746 AGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGV-VPDII--TMAKGMGNGHPL 822 (972)
T ss_pred EEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCC-CCCEE--EecccccCCeee
Confidence 677775 344555555 999999999999999999998 444432111 11111 27887 55899976544
Q ss_pred eEEEEecchhhhhcc
Q 023191 266 AMIFFRKGVKEINKQ 280 (286)
Q Consensus 266 G~l~~~~~~~~~~~~ 280 (286)
|++++++++.+....
T Consensus 823 ~av~~~~~i~~~~~~ 837 (972)
T PRK06149 823 GAVITRREIAEALEA 837 (972)
T ss_pred EEEEEcHHHHhhhcc
Confidence 889999888776653
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6e-05 Score=70.40 Aligned_cols=205 Identities=13% Similarity=0.058 Sum_probs=107.4
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~a~~~~l~a~~--- 133 (286)
-.|++.+++.+.+.+.. +... .+. ...+.+..+.+++.+.+..+.+ .|.++ ||+.|+.++++..-
T Consensus 63 ~~p~i~~Ai~~q~~~~~---~~~~-~~~---~~~~~~~~lae~L~~~~p~~~~----~v~f~~sGSEAve~AlKlAr~~~ 131 (459)
T PRK05965 63 GQESIVEAAAEQMRELP---YATG-YFH---FGSEPAIRLAAKLAERAPGSLN----HVYFTLGGSDAVDSAVRFIRHYW 131 (459)
T ss_pred CCHHHHHHHHHHHHhcC---Cccc-ccc---cCCHHHHHHHHHHHhhCCCCcC----EEEEeCChhHHHHHHHHHHHHHH
Confidence 37899999988776521 1000 000 0112223356777776643322 37775 46667776655331
Q ss_pred ---C-C-CCeEEeccCCCCcccCc-----cccccccc--cccceeeeEEEecccCC-CCCCCC--------HHHHHHHhh
Q 023191 134 ---K-P-HDRIMALDLPHGGHLSH-----GYQTDTKK--ISAVSIFFETMPYRLNE-STGYID--------YDQLEKSAT 192 (286)
Q Consensus 134 ---~-~-Gd~Vl~~~~~~~~~~~~-----~~~~~~~~--~~~~g~~~~~v~~~~~~-~~~~~d--------~e~l~~~i~ 192 (286)
. + ..+|+.....|.+...- ....++.. ....+ ...++.+... ..+.-| ++++++.+.
T Consensus 132 ~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 209 (459)
T PRK05965 132 NATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPW--QHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVA 209 (459)
T ss_pred HhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCC--CEEcCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 1 2 35788888777665310 00001110 00111 1222222110 001123 356777775
Q ss_pred h---cCCcEEEEcCCC--CCCc----cCHHHHHHHHHhcCCEEEEecccc-ccccccC--CCCCCCCcceEEEeCCCCCC
Q 023191 193 L---FRPKLIVAGASA--YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVVTTTTHKSL 260 (286)
Q Consensus 193 ~---~~tk~v~i~~~n--~g~~----~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v~~s~~K~l 260 (286)
. .++.+|++.|-. .|.. .-++++.++|++||+++|.|+.+. +|-.... .....+ ..|++++ .|.+
T Consensus 210 ~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKgl 286 (459)
T PRK05965 210 ELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV-VPDLMTV--AKGL 286 (459)
T ss_pred hcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCC-CCCeEEe--chhh
Confidence 3 256788886332 3322 238899999999999999999975 2222111 011111 2788876 7888
Q ss_pred CCCC--ceEEEEecchhhhh
Q 023191 261 RGPR--GAMIFFRKGVKEIN 278 (286)
Q Consensus 261 ~gp~--gG~l~~~~~~~~~~ 278 (286)
+|.. -|.+++++++.+..
T Consensus 287 ~gG~~Pi~av~~~~~i~~~~ 306 (459)
T PRK05965 287 TSGYVPMGAVLMSDHVYQGI 306 (459)
T ss_pred ccCCcceeEEEEcHHHHHHH
Confidence 7663 38888888876544
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.7e-05 Score=70.05 Aligned_cols=202 Identities=13% Similarity=0.106 Sum_probs=105.1
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~--~~ 134 (286)
-.|.+.+++.+.+.. .. +... .+. .+...++.+++.++++...+ .+.++++.+ ++.+++... ..
T Consensus 88 ~~p~v~~Ai~~ql~~-~~--~~~~-~~~-----~~~~~~lae~L~~~~p~~~~----~v~f~~sGseAve~AlklAr~~t 154 (459)
T PRK06082 88 GHPHVIEKVKEQMAK-LP--FSPR-RFT-----NETAIECAEKLTEIAGGELN----RVLFAPGGTSAIGMALKLARHIT 154 (459)
T ss_pred CCHHHHHHHHHHHHh-CC--CccC-ccC-----CHHHHHHHHHHHHhCCCCCC----EEEECCCcHHHHHHHHHHHHHhc
Confidence 478899999887764 21 1111 111 13333456778777753222 366655555 777555433 23
Q ss_pred CCCeEEeccCCCCcccCcccc-----ccccc--cccceeeeEEEecccCC-CCC-CC------CHHHHHHHhhh-cCCcE
Q 023191 135 PHDRIMALDLPHGGHLSHGYQ-----TDTKK--ISAVSIFFETMPYRLNE-STG-YI------DYDQLEKSATL-FRPKL 198 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~-----~~~~~--~~~~g~~~~~v~~~~~~-~~~-~~------d~e~l~~~i~~-~~tk~ 198 (286)
...+|+.....|.+...-... .++.. ....+ +..+|.+... ..+ .. +++++++.+.. .++.+
T Consensus 155 gr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAa 232 (459)
T PRK06082 155 GNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAG--VERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGA 232 (459)
T ss_pred CCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCC--CEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEE
Confidence 447788877666554210100 00000 00011 1222211100 001 01 13557777753 24667
Q ss_pred EEEcCCC-CC-CccC---HHHHHHHHHhcCCEEEEeccccc-cccccCC--CCCCCCcceEEEeCCCCCCCCCC--ceEE
Q 023191 199 IVAGASA-YA-RLYD---YERIRKVCNKQKAIMLADMAHIS-GLVAAGV--IPSPFEYADVVTTTTHKSLRGPR--GAMI 268 (286)
Q Consensus 199 v~i~~~n-~g-~~~~---l~~I~~ia~~~~~~vivD~a~~~-g~~~~~~--~~~~~~~~D~v~~s~~K~l~gp~--gG~l 268 (286)
|++.|-. .| ...| +++|.++|++||+++|.|++|.. |-....+ ...++ ..|+++ +.|.++|.. .|.+
T Consensus 233 vIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv-~PDiv~--~gKgl~gG~~P~~av 309 (459)
T PRK06082 233 FIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGI-EPDILC--IGKGLGGGLVPIAAM 309 (459)
T ss_pred EEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCC-CCCEEE--ecccccCCCCcceEE
Confidence 7776322 33 2333 89999999999999999999762 2111110 11111 278887 689997652 3777
Q ss_pred EEecchhhh
Q 023191 269 FFRKGVKEI 277 (286)
Q Consensus 269 ~~~~~~~~~ 277 (286)
++++++.+.
T Consensus 310 ~~~~~i~~~ 318 (459)
T PRK06082 310 ITKDKYNTA 318 (459)
T ss_pred EEcHHHHhh
Confidence 777776543
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.5e-05 Score=70.52 Aligned_cols=200 Identities=15% Similarity=0.117 Sum_probs=106.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChHHHHHHHHHh---c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTAL---L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~a~~~~l~a~---~ 133 (286)
-.|++.+++.+.+.... +... .+. + +.+.++.+.+.+.++... .|.++ ||+.|+..+++.. .
T Consensus 64 ~~p~v~~ai~~q~~~~~---~~~~-~~~-~----~~~~~lae~l~~~~~~~~-----~v~f~~sGseA~e~AlklAr~~t 129 (451)
T PRK07678 64 GRKELAEAAYEQLKTLS---YFPL-TQS-H----EPAIKLAEKLNEWLGGEY-----VIFFSNSGSEANETAFKIARQYH 129 (451)
T ss_pred CCHHHHHHHHHHHHhcC---cccc-ccC-C----HHHHHHHHHHHHhCCCCC-----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 37888888888776421 1110 011 1 222336677777765431 36664 5666777655533 1
Q ss_pred ----CCC-CeEEeccCCCCcccCccccc-----cccc--cccceeeeEEEecccCCCCCC---------CC---HHHHHH
Q 023191 134 ----KPH-DRIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNESTGY---------ID---YDQLEK 189 (286)
Q Consensus 134 ----~~G-d~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~~~~~---------~d---~e~l~~ 189 (286)
++| .+|+.....|.+...-.... ++.. ....+ +..++.+ +.+. .| ++.+++
T Consensus 130 ~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~ 204 (451)
T PRK07678 130 AQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPG--FLHVPPP---DCYRMPGIESEDIYDLECVKEIDR 204 (451)
T ss_pred HhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCC--CEEeCCC---ccccccccCChHHHHHHHHHHHHH
Confidence 123 57888776666543111100 0000 00111 1222211 1111 11 233566
Q ss_pred Hhh---hcCCcEEEEcCC--CCCCcc----CHHHHHHHHHhcCCEEEEecccc-cccccc--CCCCCCCCcceEEEeCCC
Q 023191 190 SAT---LFRPKLIVAGAS--AYARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTH 257 (286)
Q Consensus 190 ~i~---~~~tk~v~i~~~--n~g~~~----~l~~I~~ia~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~ 257 (286)
.+. ..++.+|++.|- +.|... -++++.++|++||+++|.|+++. +|-... .....++ ..|++++ .
T Consensus 205 ~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv-~PDivt~--g 281 (451)
T PRK07678 205 VMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV-KPDIITM--A 281 (451)
T ss_pred HHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCC-CCCEEEe--e
Confidence 664 235788888633 234332 28999999999999999999974 443221 1111111 2788865 8
Q ss_pred CCCCCC--CceEEEEecchhhhhc
Q 023191 258 KSLRGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 258 K~l~gp--~gG~l~~~~~~~~~~~ 279 (286)
|.++|. +-|++++++++.+...
T Consensus 282 K~lggG~~Pi~av~~~~~i~~~~~ 305 (451)
T PRK07678 282 KGITSAYLPLSATAVKKEIYEAFK 305 (451)
T ss_pred cccccCCcceeEEEEcHHHHHHHh
Confidence 988765 2388888888776554
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.3e-05 Score=70.72 Aligned_cols=205 Identities=10% Similarity=0.021 Sum_probs=106.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-.|++.+++.+.+.+.. +.....+. .+.+..+.+.+.+.+....+ .|.+ .||+.|+.+++....
T Consensus 61 ~~p~v~~ai~~q~~~~~---~~~~~~~~-----~~~~~~lae~L~~~~p~~~~----~v~f~~sGseAve~AlklAr~~~ 128 (429)
T PRK06173 61 NHPRLNAAATNQLAKMS---HIMFGGFT-----HEPAVELAQKLLEILPPSLN----KIFFADSGSVAVEVAMKMALQYQ 128 (429)
T ss_pred CCHHHHHHHHHHHHhcC---CccccccC-----CHHHHHHHHHHHhhCCCCcC----EEEEeCCchHHHHHHHHHHHHHH
Confidence 36888888888775421 10000011 12223355777776642222 3665 555557776555332
Q ss_pred ----CC-CCeEEeccCCCCcccCccccc------ccccc--ccceeeeEEEecccCCC--CC-CCCHHHHHHHhhh--cC
Q 023191 134 ----KP-HDRIMALDLPHGGHLSHGYQT------DTKKI--SAVSIFFETMPYRLNES--TG-YIDYDQLEKSATL--FR 195 (286)
Q Consensus 134 ----~~-Gd~Vl~~~~~~~~~~~~~~~~------~~~~~--~~~g~~~~~v~~~~~~~--~~-~~d~e~l~~~i~~--~~ 195 (286)
++ ..+|+.....|.+...-...+ ++... ...+ ...+|.+.... .+ .-+++.+++.+.. .+
T Consensus 129 ~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~ 206 (429)
T PRK06173 129 QAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPV--QYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDE 206 (429)
T ss_pred HHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCC--CeEeCCCCcccchhHHHHHHHHHHHHHHhCCCc
Confidence 13 357888877666542110000 00000 0001 11222221100 00 1146667777753 25
Q ss_pred CcEEEEcC--CCCC-C----ccCHHHHHHHHHhcCCEEEEeccccccccccC-CC-CCCCC-cceEEEeCCCCCCCCC--
Q 023191 196 PKLIVAGA--SAYA-R----LYDYERIRKVCNKQKAIMLADMAHISGLVAAG-VI-PSPFE-YADVVTTTTHKSLRGP-- 263 (286)
Q Consensus 196 tk~v~i~~--~n~g-~----~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~-~~~~~-~~D~v~~s~~K~l~gp-- 263 (286)
+.+|++.| ...| . ..-+++|.++|++||+++|+|++| .|.-..+ .. ...+. ..|+++ +.|.++|.
T Consensus 207 iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG~~ 283 (429)
T PRK06173 207 IAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IGKALTGGYL 283 (429)
T ss_pred EEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCCEEE--eehhhhCCcc
Confidence 77888876 3333 2 223889999999999999999998 5531111 10 00111 268776 68988654
Q ss_pred CceEEEEecchhhhhc
Q 023191 264 RGAMIFFRKGVKEINK 279 (286)
Q Consensus 264 ~gG~l~~~~~~~~~~~ 279 (286)
..+.+++++++.+...
T Consensus 284 p~~a~~~~~~i~~~~~ 299 (429)
T PRK06173 284 TLSATITTEAIAQTIC 299 (429)
T ss_pred ccceEEecHHHHHHHh
Confidence 3477888888776653
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00011 Score=68.58 Aligned_cols=208 Identities=13% Similarity=0.116 Sum_probs=104.2
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~--~~ 134 (286)
-.|.+.+++.+.+.+... .... ....+.+.++.+++.+++.....+ .|.+++ |+.|+.++++.. ..
T Consensus 71 ~~p~v~~ai~~q~~~~~~---~~~~-----~~~~~~~~~la~~L~~~~p~~~~~---~v~f~~sGseA~e~AlklAr~~t 139 (451)
T PRK06918 71 SHPKVKEALHKQVDQYIH---TGFN-----VMMYEPYIELAEKLAALAPGSFDK---KVLFLNSGAEAVENAVKIARKYT 139 (451)
T ss_pred CCHHHHHHHHHHHHhccC---cccc-----ccccHHHHHHHHHHHHhCCCCCCC---EEEEcCCcHHHHHHHHHHHHHHh
Confidence 378899999887765211 1100 011133334667777776532211 366655 554777665533 23
Q ss_pred CCCeEEeccCCCCcccCccccc------cccccccceeeeEEEecccCC--CCCCCC-------HHHHHHHh----hhcC
Q 023191 135 PHDRIMALDLPHGGHLSHGYQT------DTKKISAVSIFFETMPYRLNE--STGYID-------YDQLEKSA----TLFR 195 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~v~~~~~~--~~~~~d-------~e~l~~~i----~~~~ 195 (286)
...+|+.....|.+...-.... ++....-....+..+|++... ..+..+ ++.+++.+ ...+
T Consensus 140 gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (451)
T PRK06918 140 KRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPET 219 (451)
T ss_pred CCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCc
Confidence 4467888776666553211110 000000000001222322100 001000 22344333 1235
Q ss_pred CcEEEEcCCC-C-CCc----cCHHHHHHHHHhcCCEEEEeccccccccccC-CCCC-CCC-cceEEEeCCCCCCCC-CCc
Q 023191 196 PKLIVAGASA-Y-ARL----YDYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS-PFE-YADVVTTTTHKSLRG-PRG 265 (286)
Q Consensus 196 tk~v~i~~~n-~-g~~----~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~-~~~-~~D~v~~s~~K~l~g-p~g 265 (286)
+.+|++.|-. . |.. ..+++|.++|++||+++|.|+.+. |....+ .... .+. ..|++ ++.|.+++ .+-
T Consensus 220 iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~t-g~gr~g~~~a~~~~~v~pDi~--t~sK~l~~G~pi 296 (451)
T PRK06918 220 IAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQT-GFARTGKYFAIEHFDVVPDLI--TVSKSLGAGVPI 296 (451)
T ss_pred eEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CcCccCceehhHhcCCCCCEE--eeehhhcCCCcc
Confidence 6778776433 2 322 238899999999999999999964 221111 1110 011 25644 68998854 333
Q ss_pred eEEEEecchhhhhc
Q 023191 266 AMIFFRKGVKEINK 279 (286)
Q Consensus 266 G~l~~~~~~~~~~~ 279 (286)
|++++++++.+...
T Consensus 297 g~v~~~~~i~~~~~ 310 (451)
T PRK06918 297 SGVIGRKEIMDESA 310 (451)
T ss_pred EEEEEcHHHHhccC
Confidence 99999988776554
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.3e-05 Score=70.84 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=61.7
Q ss_pred CHHHHHHHhhhc--CCcEEEEcCC--CCCCccCHHHHHHHHHhcCCEEEEeccccccccccC--CCC-CCCCcceEEEeC
Q 023191 183 DYDQLEKSATLF--RPKLIVAGAS--AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG--VIP-SPFEYADVVTTT 255 (286)
Q Consensus 183 d~e~l~~~i~~~--~tk~v~i~~~--n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~--~~~-~~~~~~D~v~~s 255 (286)
|++++++.+..+ ++.+|++.+. +.+....+++|.++|++||+++|+|++| .|..... ... ..+ ..|+ .+
T Consensus 173 d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv-~PDi--~t 248 (431)
T PRK06209 173 DIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGI-VPDL--SC 248 (431)
T ss_pred CHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCC-Ccce--ee
Confidence 789999988642 4566776532 2344556999999999999999999998 5542211 110 111 2576 44
Q ss_pred CCCCCCCC-CceEEEEecchhhh
Q 023191 256 THKSLRGP-RGAMIFFRKGVKEI 277 (286)
Q Consensus 256 ~~K~l~gp-~gG~l~~~~~~~~~ 277 (286)
+.|.++|. .+|++++++++.+.
T Consensus 249 ~gK~lggG~p~~av~~~~~i~~~ 271 (431)
T PRK06209 249 FGKALGNGFAVSALAGKREYMEL 271 (431)
T ss_pred ehhhhcCCcccEEEEEHHHHHhh
Confidence 68999764 35888888888775
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=72.50 Aligned_cols=206 Identities=15% Similarity=0.096 Sum_probs=105.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-.|++.+++.+.+.+........ + .+ +....+.+++.+......+ .+.+ +||+.|+..++....
T Consensus 57 ~~p~i~~ai~~q~~~~~~~~~~~---~-~~----~~~~~lae~L~~~~p~~~~----~v~f~~SGseA~e~AlklAr~~~ 124 (422)
T PRK05630 57 GHPRLKAAAHKQIDTMSHVMFGG---L-TH----EPAIKLTRKLLNLTDNGLD----HVFYSDSGSVSVEVAIKMALQYS 124 (422)
T ss_pred CCHHHHHHHHHHHHhCCCcccCC---c-CC----HHHHHHHHHHHhhCCCCcC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 37888888888776521100000 0 11 2223355777776543222 2555 556667776555331
Q ss_pred ----CC-CCeEEeccCCCCcccCccccccc-cc-c-c-cce--eeeEEEecccCCCCCCCC----HHHHHHHhhhcCCcE
Q 023191 134 ----KP-HDRIMALDLPHGGHLSHGYQTDT-KK-I-S-AVS--IFFETMPYRLNESTGYID----YDQLEKSATLFRPKL 198 (286)
Q Consensus 134 ----~~-Gd~Vl~~~~~~~~~~~~~~~~~~-~~-~-~-~~g--~~~~~v~~~~~~~~~~~d----~e~l~~~i~~~~tk~ 198 (286)
.+ ..+|+.....|.+...-...... .. . . +.. .....+|.+.......-| .+.+++.+.+ ++.+
T Consensus 125 ~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~iAA 203 (422)
T PRK05630 125 KGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE-TVAA 203 (422)
T ss_pred HhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh-ceEE
Confidence 12 35788887766654211110000 00 0 0 000 001122222100000001 2445555554 7888
Q ss_pred EEEcCC--C-CC----CccCHHHHHHHHHhcCCEEEEeccccccccccC-CCCCC-CC-cceEEEeCCCCCCCC--CCce
Q 023191 199 IVAGAS--A-YA----RLYDYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPSP-FE-YADVVTTTTHKSLRG--PRGA 266 (286)
Q Consensus 199 v~i~~~--n-~g----~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~~-~~-~~D~v~~s~~K~l~g--p~gG 266 (286)
|++.|- . .| ....+++|.++|++||+++|+|++|. |.-..+ ..... .. ..|++ ++.|.++| +..|
T Consensus 204 vi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~t-G~GrtG~~~a~~~~gv~PDi~--t~gK~l~gG~~p~~ 280 (422)
T PRK05630 204 IIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIAT-GFGRTGELFATLAAGVTPDIM--CVGKALTGGFMSFA 280 (422)
T ss_pred EEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccee-CCCcCchhhHHHhcCCCCCee--eeechhhcCccccc
Confidence 888762 2 23 23358899999999999999999984 331111 10000 01 26777 56899955 4668
Q ss_pred EEEEecchhhhhc
Q 023191 267 MIFFRKGVKEINK 279 (286)
Q Consensus 267 ~l~~~~~~~~~~~ 279 (286)
++++++++.+...
T Consensus 281 av~~~~~i~~~~~ 293 (422)
T PRK05630 281 ATLCTDKVAQLIS 293 (422)
T ss_pred eeeccHHHHHHHh
Confidence 8999988877654
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0001 Score=68.85 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=57.2
Q ss_pred HHHHHHhhh---cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccC--CCCCCCCcceEE
Q 023191 185 DQLEKSATL---FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VIPSPFEYADVV 252 (286)
Q Consensus 185 e~l~~~i~~---~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~--~~~~~~~~~D~v 252 (286)
+.+++.+.. .++.+|++.|-. .|...+ +++|.++|++||+++|+|+++. +|-.... .....+ ..|++
T Consensus 206 ~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv 284 (456)
T PRK07480 206 RQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGI-KPDLM 284 (456)
T ss_pred HHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCC-CCCee
Confidence 566655532 256788886332 343333 8999999999999999999984 3322211 111111 26776
Q ss_pred EeCCCCCCCCCC--ceEEEEecchhhhh
Q 023191 253 TTTTHKSLRGPR--GAMIFFRKGVKEIN 278 (286)
Q Consensus 253 ~~s~~K~l~gp~--gG~l~~~~~~~~~~ 278 (286)
++ .|.++|.. -|.+++++++.+..
T Consensus 285 ~~--gK~l~gG~~Pi~av~~~~~i~~~~ 310 (456)
T PRK07480 285 TI--AKGLTSGYIPMGAVGVGDRVAEVL 310 (456)
T ss_pred ee--ehhhccCCccceEEEEcHHHHHHH
Confidence 54 89887642 47777788877665
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00016 Score=73.73 Aligned_cols=206 Identities=13% Similarity=0.081 Sum_probs=107.4
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHh--cCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTAL--LKP 135 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~--~~~ 135 (286)
.|.|.+++.+.+..... . . .+. .+.+.++.+++.+.+..+.+ .+.+ .||+.|+.++++.. ...
T Consensus 640 hp~v~~Ai~~q~~~l~~--~--~-~~~-----~~~~~~lAe~L~~~~p~~~~----~v~f~nSGsEA~e~AlklAr~~tG 705 (1013)
T PRK06148 640 HPRVVAAAARQAARLNT--N--T-RYL-----HDAIVAYAERLTATLPDGLT----VAFFVNSGSEANSLALRLARAHTG 705 (1013)
T ss_pred CHHHHHHHHHHHhhcCC--c--C-CcC-----CHHHHHHHHHHHHhCCCCcC----EEEEeCCcHHHHHHHHHHHHHhcC
Confidence 68899998887754210 0 0 111 12333356777776643222 2544 55666777655543 234
Q ss_pred CCeEEeccCCCCcccCccccc----cccccc-cceeeeEEEecccC-CCCCC-CC-------HHHHHHHhh---h--cCC
Q 023191 136 HDRIMALDLPHGGHLSHGYQT----DTKKIS-AVSIFFETMPYRLN-ESTGY-ID-------YDQLEKSAT---L--FRP 196 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~----~~~~~~-~~g~~~~~v~~~~~-~~~~~-~d-------~e~l~~~i~---~--~~t 196 (286)
..+|+.....|.+...-...+ +..... ..-..+..++.+.. ...+. .| .+.+++.+. . .++
T Consensus 706 r~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~i 785 (1013)
T PRK06148 706 QRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGP 785 (1013)
T ss_pred CCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCce
Confidence 567888877666553211000 000000 00000111111100 00011 11 134555553 1 256
Q ss_pred cEEEEc--CCCCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCC---CCCCCCcceEEEeCCCCCCCCCCc-
Q 023191 197 KLIVAG--ASAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGV---IPSPFEYADVVTTTTHKSLRGPRG- 265 (286)
Q Consensus 197 k~v~i~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~---~~~~~~~~D~v~~s~~K~l~gp~g- 265 (286)
.+|++. ..+-|.+.+ ++++.++|++||+++|.|++|. +|-..... ....+ -.|++++ .|.++|...
T Consensus 786 AAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv-~PDivt~--gK~lggG~Pl 862 (1013)
T PRK06148 786 AFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGV-VPDIVTM--GKPIGNGHPM 862 (1013)
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCC-Ccceeee--cccccCCcce
Confidence 778876 333343333 8999999999999999999984 44332111 11111 2788765 899876544
Q ss_pred eEEEEecchhhhhccC
Q 023191 266 AMIFFRKGVKEINKQG 281 (286)
Q Consensus 266 G~l~~~~~~~~~~~~~ 281 (286)
|++++++++.+....+
T Consensus 863 gav~~~~ei~~~~~~g 878 (1013)
T PRK06148 863 GAVVTTREIADSFDNG 878 (1013)
T ss_pred EEEEEcHHHHhhccCC
Confidence 8888998887765543
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00024 Score=66.24 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=104.5
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHh---c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL---L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~---~ 133 (286)
-.|++.+|+.+.+.... +... +.+.. .+.+.++.+++.++++-..- ..+.+++ |+.|+.++++.. .
T Consensus 59 ~~p~v~~Ai~~ql~~~~---~~~~--~~~~~--~~~~~~lae~L~~~~~~~~~---~~v~f~~sGsEAve~AlklAr~~~ 128 (449)
T PRK07481 59 NREEVKEAIVRQLDELE---YYST--FDGTT--HPRAIELSYELIDMFAPEGM---RRVFFSSGGSDSVETALKLARQYW 128 (449)
T ss_pred CCHHHHHHHHHHHHhcc---ceec--ccccC--CHHHHHHHHHHHHhcCCCCC---CEEEEcCchHHHHHHHHHHHHHHH
Confidence 36888888888776421 1000 00001 12233366777777642111 1366655 555777665533 1
Q ss_pred ----CC-CCeEEeccCCCCcccCccccc-----cccc--cccceeeeEEEecccCC-CCCC-CCHHH--------HHHHh
Q 023191 134 ----KP-HDRIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNE-STGY-IDYDQ--------LEKSA 191 (286)
Q Consensus 134 ----~~-Gd~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~-~~~~-~d~e~--------l~~~i 191 (286)
.+ ..+|+.....|.+...-.... ++.. ....| +..++.+... ..+. -|+++ +++.+
T Consensus 129 ~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i 206 (449)
T PRK07481 129 KVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPG--CFHVETPWLYRNPFTEQDPEELARICARLLEREI 206 (449)
T ss_pred HhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCC--CEEeCCCcccccccCCCCHHHHHHHHHHHHHHHH
Confidence 12 357888887776643111100 0000 00111 1112211000 0011 13333 34444
Q ss_pred h---hcCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-cccccc--CCCCCCCCcceEEEeCCCCC
Q 023191 192 T---LFRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTHKS 259 (286)
Q Consensus 192 ~---~~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~K~ 259 (286)
. ..++.+|++.|-. .|...+ ++++.++|++||+++|.|+++. +|-... ......+ ..|++++ .|.
T Consensus 207 ~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKg 283 (449)
T PRK07481 207 AFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV-KPDIMCL--AKG 283 (449)
T ss_pred HhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCC-CCCEEEE--eec
Confidence 3 1257788886332 343322 8999999999999999999975 222211 0111111 2788776 798
Q ss_pred CCCC--CceEEEEecchhhhhc
Q 023191 260 LRGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 260 l~gp--~gG~l~~~~~~~~~~~ 279 (286)
++|. +-|++++++++.+..+
T Consensus 284 l~gG~~Pi~av~~~~~i~~~~~ 305 (449)
T PRK07481 284 ITSGYVPLGATMVNARIADAFE 305 (449)
T ss_pred ccCCCcCceEEEEcHHHHHHHh
Confidence 8764 2477888888776654
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00017 Score=67.17 Aligned_cols=200 Identities=11% Similarity=0.051 Sum_probs=101.3
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~--~~ 134 (286)
-+|++.+++.+.+..... ....++ ..+.+.++.+++.+++......+ ..+++ +||+.|+..+++.. ..
T Consensus 56 ~~p~i~~ai~~q~~~~~~---~~~~~~-----~~~~~~~lae~L~~~~p~~~~~~-~~~f~~~sGsEA~e~AlklAr~~t 126 (442)
T TIGR00709 56 NHPNMKQKILDYLQSGLP---LHTLDL-----TTPLKDAFIEALLNIIPKRKMDY-KLQFPGPSGADAVEAAIKLAKTYT 126 (442)
T ss_pred CCHHHHHHHHHHHHhccC---cccccc-----CcHHHHHHHHHHHHhCCCcCCCc-cEEEeCCCHHHHHHHHHHHHHHhc
Confidence 478899999887764210 000001 11333346677877764321000 12444 57777777655533 23
Q ss_pred CCCeEEeccCCCCcccCccccc-----cccc--cccceeeeEEEecccCCCCCCC--------CH----HHHHHHhhh--
Q 023191 135 PHDRIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNESTGYI--------DY----DQLEKSATL-- 193 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~~~~~~--------d~----e~l~~~i~~-- 193 (286)
...+|+.....|.+...-...+ ++.+ ....+ +..++++ +.... +. +.+++.+..
T Consensus 127 gr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (442)
T TIGR00709 127 GRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPG--VQFMPYP---HEYRCPFGIGGEAGSNASIEYFENFIEDVE 201 (442)
T ss_pred CCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCC--cEEeCCC---ccccccccCCchhHHHHHHHHHHHHHHhhc
Confidence 4567888876666553211111 0000 00111 2222222 11111 11 223344421
Q ss_pred ---cCCcEEEEc-CCCC-CCc----cCHHHHHHHHHhcCCEEEEecccc-ccccccCCCCC-CCC-cceEEEeCCCCCCC
Q 023191 194 ---FRPKLIVAG-ASAY-ARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPS-PFE-YADVVTTTTHKSLR 261 (286)
Q Consensus 194 ---~~tk~v~i~-~~n~-g~~----~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~-~~~-~~D~v~~s~~K~l~ 261 (286)
.++.+|++. ..+. |.. .-+++|.++|++||+++|.|+++. +|-.. ..... .+. ..|+++ +.|.++
T Consensus 202 ~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG-~~~a~~~~gv~PDiv~--~gK~l~ 278 (442)
T TIGR00709 202 SGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSG-TMFAFEHAGIEPDFVV--MSKAVG 278 (442)
T ss_pred cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCC-chhHHHHcCCCCcEEE--Eccccc
Confidence 256777776 3233 322 238899999999999999999975 33221 11110 011 268888 689886
Q ss_pred CCC-ceEEEEecch
Q 023191 262 GPR-GAMIFFRKGV 274 (286)
Q Consensus 262 gp~-gG~l~~~~~~ 274 (286)
+.- -|++++++++
T Consensus 279 ~G~Pigav~~~~~~ 292 (442)
T TIGR00709 279 GGLPLAVLLIAPEF 292 (442)
T ss_pred CCcccEEEEEchHH
Confidence 533 3888888764
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00017 Score=67.50 Aligned_cols=204 Identities=10% Similarity=0.006 Sum_probs=106.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~~--- 133 (286)
-.|++.+++.+.+.... +.....+. .+.+.++.+++.+++....+ .|.+++ |+.|+..+++...
T Consensus 64 ~~p~v~~Ai~~ql~~l~---~~~~~~~~-----~~~~~~lae~L~~~~p~~~~----~v~f~~sGsEAve~AlKlAr~~~ 131 (466)
T PRK07030 64 ANPRINQRIKDQVDQLE---HVILAGFS-----HEPVIELSERLVKITPPGLS----RCFYADNGSSAIEVALKMSFHYW 131 (466)
T ss_pred CCHHHHHHHHHHHHhcC---CccccccC-----CHHHHHHHHHHHHhCCCCcC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 36888888888776421 00000011 12233356777776642222 366655 5557776665431
Q ss_pred -----CCCCeEEeccCCCCcccCcccc-----ccccc--cccceeeeEEEecccCC-CCC--------CCCHHHHHHHhh
Q 023191 134 -----KPHDRIMALDLPHGGHLSHGYQ-----TDTKK--ISAVSIFFETMPYRLNE-STG--------YIDYDQLEKSAT 192 (286)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~-----~~~~~--~~~~g~~~~~v~~~~~~-~~~--------~~d~e~l~~~i~ 192 (286)
....+|+.....|.+...-... .++.. ....+ +..+|.+... ... .-+++++++.+.
T Consensus 132 ~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~ 209 (466)
T PRK07030 132 RNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLD--TIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLA 209 (466)
T ss_pred HHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCC--CEEcCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 1235788887666654211100 00000 00011 1222222100 000 113566777775
Q ss_pred h--cCCcEEEEcC-C-C-CCCc----cCHHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEEEeCCCCCC
Q 023191 193 L--FRPKLIVAGA-S-A-YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVVTTTTHKSL 260 (286)
Q Consensus 193 ~--~~tk~v~i~~-~-n-~g~~----~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v~~s~~K~l 260 (286)
. .++.+|++.| . . .|.. .-+++|.++|++||+++|.|+.+. +|-..... ...++ ..|++++ .|.+
T Consensus 210 ~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv-~PDiv~~--gKgl 286 (466)
T PRK07030 210 EHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGI-RPDFLCL--SKAL 286 (466)
T ss_pred hCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCC-CCCEEee--ehhc
Confidence 3 2567888876 2 2 3322 238899999999999999999975 33222100 11111 2788876 7888
Q ss_pred CCCC--ceEEEEecchhhhh
Q 023191 261 RGPR--GAMIFFRKGVKEIN 278 (286)
Q Consensus 261 ~gp~--gG~l~~~~~~~~~~ 278 (286)
+|.. -|.+++++++.+..
T Consensus 287 ~gG~~Pi~av~~~~ei~~~~ 306 (466)
T PRK07030 287 TGGYLPLAAVLTTDTVYQAF 306 (466)
T ss_pred cCCcccceEEEecHHHHHHH
Confidence 7663 48888898876654
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00032 Score=65.65 Aligned_cols=208 Identities=12% Similarity=0.101 Sum_probs=105.1
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHh---c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL---L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~---~ 133 (286)
-.|++.+++.+.+.... +... +.. ...+.+..+.+++.+....+.+ .|.+++ |+.|+..+++.. .
T Consensus 68 ~~p~v~~Ai~~q~~~~~---~~~~--~~~--~~~~~~~~lae~L~~~~p~~~~----~v~f~~sGseAve~AlklAr~~~ 136 (466)
T PRK07036 68 GREEMADAIADQARRLP---YYTP--FGD--MTNAPAAELAAKLAELAPGDLN----HVFLTTGGSTAVDSALRFVHYYF 136 (466)
T ss_pred CCHHHHHHHHHHHHhCc---cccc--ccc--cCCHHHHHHHHHHHHhCCCCcC----EEEEeCCchHHHHHHHHHHHHHH
Confidence 37888888887765411 1000 000 0112333466777776643222 366655 555777655533 1
Q ss_pred ---C-C-CCeEEeccCCCCcccCcccc-----ccccccccceeeeEEEecccC-CCCCCC--------CHHHHHHHhhh-
Q 023191 134 ---K-P-HDRIMALDLPHGGHLSHGYQ-----TDTKKISAVSIFFETMPYRLN-ESTGYI--------DYDQLEKSATL- 193 (286)
Q Consensus 134 ---~-~-Gd~Vl~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~v~~~~~-~~~~~~--------d~e~l~~~i~~- 193 (286)
. + ..+|+.....|.+...-... .++....-....+..++.+.. ...... .++.+++.+..
T Consensus 137 ~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 216 (466)
T PRK07036 137 NVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSL 216 (466)
T ss_pred HhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHc
Confidence 1 2 36788877666654311000 000000000000112222110 000011 13445555532
Q ss_pred --cCCcEEEEcCC--CCCCccC----HHHHHHHHHhcCCEEEEecccc-cccccc--CCC-CCCCCcceEEEeCCCCCCC
Q 023191 194 --FRPKLIVAGAS--AYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAA--GVI-PSPFEYADVVTTTTHKSLR 261 (286)
Q Consensus 194 --~~tk~v~i~~~--n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~--~~~-~~~~~~~D~v~~s~~K~l~ 261 (286)
.++.+|++.|- +.|...+ +++|.++|++||+++|.|+++. +|-... ... ...+ ..|++++ .|.++
T Consensus 217 ~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv-~PDivt~--gK~l~ 293 (466)
T PRK07036 217 GADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGI-QPDIITF--AKGLT 293 (466)
T ss_pred CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCC-CCCEEEE--ccccc
Confidence 25678888633 2444443 8999999999999999999974 332210 111 1111 2687755 89887
Q ss_pred CC--CceEEEEecchhhhhc
Q 023191 262 GP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 262 gp--~gG~l~~~~~~~~~~~ 279 (286)
|. +-|.+++++++.+..+
T Consensus 294 gG~~Pi~av~~~~~i~~~~~ 313 (466)
T PRK07036 294 SGYQPLGAVIISERLLDVIS 313 (466)
T ss_pred cCccccEEEEEcHHHHHHHh
Confidence 75 2477778888776654
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00017 Score=67.02 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=58.8
Q ss_pred HHHHHHhhh---cCCcEEEEcCCC--C-CCcc----CHHHHHHHHHhcCCEEEEecccc-ccccccCCC---CCCCCcce
Q 023191 185 DQLEKSATL---FRPKLIVAGASA--Y-ARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAAGVI---PSPFEYAD 250 (286)
Q Consensus 185 e~l~~~i~~---~~tk~v~i~~~n--~-g~~~----~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~---~~~~~~~D 250 (286)
+++++.+.. .++.+|++.|-. . |... -++.|.++|++||+++|.|+.+. +|-.. ... ...+ ..|
T Consensus 186 ~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG-~~~a~~~~gv-~PD 263 (443)
T PRK07483 186 DELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTG-TLFACEEDGV-APD 263 (443)
T ss_pred HHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCc-HHHHHhhcCC-CCC
Confidence 566665542 256788886432 2 3222 38999999999999999999976 32221 111 1111 268
Q ss_pred EEEeCCCCCCCCCC--ceEEEEecchhhhhc
Q 023191 251 VVTTTTHKSLRGPR--GAMIFFRKGVKEINK 279 (286)
Q Consensus 251 ~v~~s~~K~l~gp~--gG~l~~~~~~~~~~~ 279 (286)
++++ .|.++|.. -|++++++++.+..+
T Consensus 264 iv~~--gK~l~gG~~Pi~av~~~~~i~~~~~ 292 (443)
T PRK07483 264 LVTI--AKGLGAGYQPIGAVLASDRIYDAIA 292 (443)
T ss_pred eeee--hhhhccCccccEEEEEcHHHHHHHh
Confidence 7776 79887663 488888888776654
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.3e-05 Score=70.78 Aligned_cols=204 Identities=15% Similarity=0.118 Sum_probs=107.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-+|++.+++.+.+.... .. ....+ .+ +.+.++.+++.+++....+ .+.+ .||+.|+.++++...
T Consensus 73 ~~p~v~~Ai~~ql~~l~-~~--~~~~~-~~----~~~~~lae~L~~~~p~~~~----~v~f~~SGseAve~AlklAr~~~ 140 (460)
T PRK06916 73 QVPELDEAIREQLNKIA-HS--TLLGL-AN----VPSILLAEKLIEVVPEGLK----KVFYSDSGATAVEIAIKMAFQYW 140 (460)
T ss_pred CCHHHHHHHHHHHHhCC-Cc--ccccc-CC----HHHHHHHHHHHHhCCCCCC----EEEEeCCcHHHHHHHHHHHHHHH
Confidence 47889999988776521 01 00001 11 2233466777777653222 3555 555557776655331
Q ss_pred ----CC-CCeEEeccCCCCcccCccccc-----ccccc--ccceeeeEEEecccC-CCCC--------CCCHHHHHHHhh
Q 023191 134 ----KP-HDRIMALDLPHGGHLSHGYQT-----DTKKI--SAVSIFFETMPYRLN-ESTG--------YIDYDQLEKSAT 192 (286)
Q Consensus 134 ----~~-Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~--~~~g~~~~~v~~~~~-~~~~--------~~d~e~l~~~i~ 192 (286)
.+ ..+|+.....|.+...-...+ ++... ...+ ...+|.+.. ...+ .-+++.+++.+.
T Consensus 141 ~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~--~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~ 218 (460)
T PRK06916 141 QNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFE--AIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLK 218 (460)
T ss_pred HhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCC--CEEeCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 13 467888887666643111100 00000 0001 122322200 0000 124566777775
Q ss_pred h--cCCcEEEEcC--CC-CCCc----cCHHHHHHHHHhcCCEEEEecccc-ccccccCCCCC-CCC-cceEEEeCCCCCC
Q 023191 193 L--FRPKLIVAGA--SA-YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPS-PFE-YADVVTTTTHKSL 260 (286)
Q Consensus 193 ~--~~tk~v~i~~--~n-~g~~----~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~-~~~-~~D~v~~s~~K~l 260 (286)
. .++.+|++.| .. .|.. .-++++.++|++||+++|.|+++. +|-.. ..... .+. ..|+++ +.|.+
T Consensus 219 ~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG-~~~a~~~~gv~PDiv~--~gK~l 295 (460)
T PRK06916 219 EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTG-KMFACEHENVTPDIMT--AGKGL 295 (460)
T ss_pred hCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCc-hhhHHHhcCCCCCeee--eehhh
Confidence 3 2577888876 23 3322 238899999999999999999974 22211 11000 011 278775 48988
Q ss_pred CCCC--ceEEEEecchhhhh
Q 023191 261 RGPR--GAMIFFRKGVKEIN 278 (286)
Q Consensus 261 ~gp~--gG~l~~~~~~~~~~ 278 (286)
+|.. -|++++++++.+..
T Consensus 296 ~gG~~Pi~av~~~~ei~~~~ 315 (460)
T PRK06916 296 TGGYLPIAITVTTDEIYNAF 315 (460)
T ss_pred hcCccccceeeecHHHHHHh
Confidence 6652 38888888876544
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.8e-05 Score=68.43 Aligned_cols=207 Identities=13% Similarity=0.057 Sum_probs=114.9
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCC-CcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH--
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPG-ARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-- 123 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-- 123 (286)
...|+++|....|++|++.+.+.+.+....|.+- ...+.+ .....+-..+++.++++++++.+. .|.+..|+.
T Consensus 5 ~~~nFsaGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRs-k~~~~v~~~a~~~lreLl~iPd~Y---~VlflqGGat~ 80 (365)
T COG1932 5 RVYNFSAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRS-KEFKNVLEEAEKDLRELLNIPDDY---KVLFLQGGATG 80 (365)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhhccCCcceeeecccc-HHHHHHHHHHHHHHHHHhCCCCCc---eEEEEcCccHH
Confidence 4678888888889999988887766532222111 011111 223345556778899999997764 677777655
Q ss_pred HHHHHHHHhcCCCCe--EEeccCCCCcccCccccccccccccceeeeEEEecc-cC-CCCCCCCHHHHHHHhhhcCCcEE
Q 023191 124 SNFQVYTALLKPHDR--IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR-LN-ESTGYIDYDQLEKSATLFRPKLI 199 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~-~~~~~~d~e~l~~~i~~~~tk~v 199 (286)
...++...++..+.. |..-. +.... + ..+...+......... .. .-+..+|++... +.+ +..-|
T Consensus 81 qf~~~p~nLl~~~~~~yv~~g~--Ws~~a------~-~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~-~~ayv 148 (365)
T COG1932 81 QFAMAPMNLLGKRGTDYVDTGA--WSEFA------I-KEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSD-NDAYV 148 (365)
T ss_pred HHHHHHHhhhcccCceeEeeee--hhHhH------H-HHHHHhcccccccccceeccCccCCCChhhcc--cCC-CccEE
Confidence 444477777766543 33221 11110 0 0111111101111101 11 012345665543 333 34446
Q ss_pred EEcCCC--CCCccC-HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchh
Q 023191 200 VAGASA--YARLYD-YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (286)
Q Consensus 200 ~i~~~n--~g~~~~-l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (286)
.+|+.+ .|...+ ...+. . +.++++|.+..+...+.++.. .|++.++..|.+ ||.| ++++.|+++.
T Consensus 149 ~~~~NeTi~Gv~v~~~p~~~---~--~~~~v~D~SS~ilsr~iDvsk-----~dviyagaQKnl-GpaGltvvIvr~~~l 217 (365)
T COG1932 149 HFCWNETISGVEVPELPDIG---S--DGLLVADASSAILSRPIDVSK-----YDVIYAGAQKNL-GPAGLTVVIVRPDLL 217 (365)
T ss_pred EEecCCcccceEccCCCCCC---C--CceEEEecccHHhcCCCChhH-----cceEEEehhhcc-CccceEEEEEcHHHH
Confidence 666444 453332 22221 1 278999999666655544433 789999999988 7888 9999999876
Q ss_pred hhhcc
Q 023191 276 EINKQ 280 (286)
Q Consensus 276 ~~~~~ 280 (286)
....+
T Consensus 218 ~r~~~ 222 (365)
T COG1932 218 ERAES 222 (365)
T ss_pred hcccc
Confidence 55543
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00031 Score=65.45 Aligned_cols=205 Identities=14% Similarity=0.089 Sum_probs=107.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-.|+|.+++.+.+.... ..+.. .+. .+.+.++.+++.+.+....+ .+++ +||+.|+.++++...
T Consensus 48 ~hp~v~~Ai~~ql~~~~-~~~~~--~~~-----~~~~~~lae~L~~~~p~~~~----~v~f~~sGsEAve~AlklAr~~~ 115 (447)
T PRK06917 48 GVKEIADAIKEQAEEVS-FVYRS--QFT-----SEPAEKLAKKLSDLSPGDLN----WSFFVNSGSEANETAMKIAIQHF 115 (447)
T ss_pred CCHHHHHHHHHHHhhCc-Ccccc--ccC-----CHHHHHHHHHHHHhCCCCCC----EEEEeCChHHHHHHHHHHHHHHH
Confidence 47888888888776521 11100 011 13334466777777643222 3555 556667776666441
Q ss_pred -----CCCCeEEeccCCCCcccCccccc-----cccc--cccceeeeEEEecccCC-----CC-C---CCCHHHHHHHhh
Q 023191 134 -----KPHDRIMALDLPHGGHLSHGYQT-----DTKK--ISAVSIFFETMPYRLNE-----ST-G---YIDYDQLEKSAT 192 (286)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~--~~~~g~~~~~v~~~~~~-----~~-~---~~d~e~l~~~i~ 192 (286)
....+|+.....|.+...-.... ++.. ..+.+ +..++.+... ++ . .-+++.+++.+.
T Consensus 116 ~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~ 193 (447)
T PRK06917 116 QERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLED--YPTISAPYCYRCPVQKVYPTCQLACATELETAIE 193 (447)
T ss_pred HhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCC--CeEeCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 22367888876666553111100 0000 00001 1112211100 00 0 013466777775
Q ss_pred hc---CCcEEEEcCC--CCC-C----ccCHHHHHHHHHhcCCEEEEeccccccc-cccCCCC-CCCC-cceEEEeCCCCC
Q 023191 193 LF---RPKLIVAGAS--AYA-R----LYDYERIRKVCNKQKAIMLADMAHISGL-VAAGVIP-SPFE-YADVVTTTTHKS 259 (286)
Q Consensus 193 ~~---~tk~v~i~~~--n~g-~----~~~l~~I~~ia~~~~~~vivD~a~~~g~-~~~~~~~-~~~~-~~D~v~~s~~K~ 259 (286)
.+ ++.+|++.|- +.| . ..-+++|.++|++||+++|.|+++. |. ....... ..+. ..|++++ .|.
T Consensus 194 ~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t-GfGRtG~~~a~~~~gv~PDi~~~--gK~ 270 (447)
T PRK06917 194 RIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT-GLGRTGAMFAMEHWGVEPDIMTL--GKG 270 (447)
T ss_pred hcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh-CcCcccchhhHHhcCCCCCEEEe--eeh
Confidence 32 5678888642 223 2 2238899999999999999999976 32 1111110 0011 2687654 899
Q ss_pred CCCC--CceEEEEecchhhhhc
Q 023191 260 LRGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 260 l~gp--~gG~l~~~~~~~~~~~ 279 (286)
++|. +.|++++++++.+...
T Consensus 271 l~~G~~Pi~a~~~~~~i~~~~~ 292 (447)
T PRK06917 271 LGAGYTPIAATVVSDRVMEPIL 292 (447)
T ss_pred hccCCcceEEEEEcHHHHHHHh
Confidence 9765 3588888888776654
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00021 Score=66.99 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=59.4
Q ss_pred HHHHHHHhhh--cCCcEEEEcC--CC-CCC----ccCHHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceE
Q 023191 184 YDQLEKSATL--FRPKLIVAGA--SA-YAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADV 251 (286)
Q Consensus 184 ~e~l~~~i~~--~~tk~v~i~~--~n-~g~----~~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~ 251 (286)
++.+++.+.. .++.+|++.| .. .|. ..-++++.++|++||+++|.|+.+. +|-..... ....+ ..|+
T Consensus 223 ~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv-~PDi 301 (472)
T PRK08742 223 ADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGV-MPDL 301 (472)
T ss_pred HHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCC-CCCE
Confidence 5667777752 2577888876 22 332 2238899999999999999999975 33222110 11111 2788
Q ss_pred EEeCCCCCCCCCC--ceEEEEecchhhhh
Q 023191 252 VTTTTHKSLRGPR--GAMIFFRKGVKEIN 278 (286)
Q Consensus 252 v~~s~~K~l~gp~--gG~l~~~~~~~~~~ 278 (286)
+++ .|.++|.. -|.+++++++.+..
T Consensus 302 v~~--gKgl~gG~~Plaav~~~~ei~~~~ 328 (472)
T PRK08742 302 LCL--SKGLTGGFLPLSAVLATQQLYDAF 328 (472)
T ss_pred EEE--cccccCCCCCcceeeccHHHHHHh
Confidence 876 79886653 37788888876543
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00032 Score=65.57 Aligned_cols=204 Identities=11% Similarity=0.110 Sum_probs=103.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe--CCChHHHHHHHHHh--c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS--LSGSPSNFQVYTAL--L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~--~sG~~a~~~~l~a~--~ 133 (286)
-+|.+.+++.+.+.+..... .. .+. + +.+.++.+++.+....+... ...+++ .||+.|+..+++.. .
T Consensus 80 ~~p~v~~Ai~~ql~~~~~~~--~~-~~~-~----~~~~~la~~L~~~~p~~~~~-~~~v~f~~~SGSEAve~AlklAr~~ 150 (464)
T PRK06938 80 NHPVVIEAIQQVLADELPLH--TL-DLT-T----PVKDQFVQDLFASLPEAFAR-EAKIQFCGPTGTDAVEAALKLVKTA 150 (464)
T ss_pred CCHHHHHHHHHHHHhhhccc--cc-ccC-C----HHHHHHHHHHHHhCcccccc-cceEEEeCCCcHHHHHHHHHHHHHh
Confidence 47899999988775422111 00 011 1 22223445565554321100 002544 47887777655533 2
Q ss_pred CCCCeEEeccCCCCcccCccccc-----cccccc-cceeeeEEEecccCC-CCC--------CCCHHHHHHHhhhc----
Q 023191 134 KPHDRIMALDLPHGGHLSHGYQT-----DTKKIS-AVSIFFETMPYRLNE-STG--------YIDYDQLEKSATLF---- 194 (286)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~-~~g~~~~~v~~~~~~-~~~--------~~d~e~l~~~i~~~---- 194 (286)
....+|+.....|.+...-...+ ++.... +.. .+..+|++... ..+ ..+++.+++.+.+.
T Consensus 151 tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 229 (464)
T PRK06938 151 TGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLP-GVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGV 229 (464)
T ss_pred hCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCC-CcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCC
Confidence 34567888776666553111110 000000 000 12233332110 000 12367788877631
Q ss_pred -CCcEEEEcCCC--CCCc----cCHHHHHHHHHhcCCEEEEecccc-cccccc--CCCCCCCCcceEEEeCCCCCCCCCC
Q 023191 195 -RPKLIVAGASA--YARL----YDYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTHKSLRGPR 264 (286)
Q Consensus 195 -~tk~v~i~~~n--~g~~----~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~K~l~gp~ 264 (286)
++.+|++.|-. -|.. .-++++.++|++||+++|.|+.+. +|-... .....++ -.|++++ .|.++|..
T Consensus 230 ~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv-~PDiv~~--gKglggG~ 306 (464)
T PRK06938 230 VLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGI-IPDVVVL--SKAIGGSL 306 (464)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCC-CCCEEEe--eccccCCC
Confidence 46788886332 2322 238899999999999999999975 222110 0011111 2788876 78886644
Q ss_pred c-eEEEEecch
Q 023191 265 G-AMIFFRKGV 274 (286)
Q Consensus 265 g-G~l~~~~~~ 274 (286)
. |++++++++
T Consensus 307 PlsAv~~~~~~ 317 (464)
T PRK06938 307 PLAVVVYREWL 317 (464)
T ss_pred ceEEEeehhHh
Confidence 4 777787765
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0011 Score=62.10 Aligned_cols=202 Identities=13% Similarity=0.084 Sum_probs=100.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC-CCCcceeEEe-CCChHHHHHHHHHh--c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQS-LSGSPSNFQVYTAL--L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~v~~-~sG~~a~~~~l~a~--~ 133 (286)
-.|++.+++.+.+........ . .+ ..+.+.++.+++.+.+... .+. ..+++ .||+.|+.++++.. .
T Consensus 75 ~~p~v~~Ai~~q~~~~~~~~~--~-~~-----~~~~~~~lAe~L~~~~p~~~~~~--~~~f~~~SGsEAve~AlklAr~~ 144 (459)
T PRK06931 75 NHPDVLQSIQDVLTSGLPLHT--L-DL-----TTPLKDAFSEYLLSLLPGQGKEY--CLQFTGPSGADAVEAAIKLAKTY 144 (459)
T ss_pred CCHHHHHHHHHHHhhhccccc--c-cc-----CCHHHHHHHHHHHHhCCCccccc--eEEEeCCCcHHHHHHHHHHHHHh
Confidence 378899999887754210000 0 01 1133334667777776422 111 12355 57777777655533 3
Q ss_pred CCCCeEEeccCCCCcccCccccc-----ccccc--ccceeeeEEEecccCC-CCC----CCCHHHH----HHHhhh----
Q 023191 134 KPHDRIMALDLPHGGHLSHGYQT-----DTKKI--SAVSIFFETMPYRLNE-STG----YIDYDQL----EKSATL---- 193 (286)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~--~~~g~~~~~v~~~~~~-~~~----~~d~e~l----~~~i~~---- 193 (286)
....+|+.....|.+...-.... ++... ...+ +..+|++... ..+ .-+.+.+ ++.+..
T Consensus 145 tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (459)
T PRK06931 145 TGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPG--VQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESG 222 (459)
T ss_pred cCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCC--cEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcC
Confidence 45567888877676653211100 10000 0111 2223322100 000 0123333 333321
Q ss_pred -cCCcEEEEcC--CCCCCcc----CHHHHHHHHHhcCCEEEEecccc-cccccc--CCCCCCCCcceEEEeCCCCCCCCC
Q 023191 194 -FRPKLIVAGA--SAYARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAA--GVIPSPFEYADVVTTTTHKSLRGP 263 (286)
Q Consensus 194 -~~tk~v~i~~--~n~g~~~----~l~~I~~ia~~~~~~vivD~a~~-~g~~~~--~~~~~~~~~~D~v~~s~~K~l~gp 263 (286)
.++.+|++.| .+-|... -++++.++|++||+++|.|+.+. +|-... ......+ ..|++++ .|.++|.
T Consensus 223 ~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv-~PDivt~--gK~l~gG 299 (459)
T PRK06931 223 VRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGI-EPDIIVM--SKAVGGG 299 (459)
T ss_pred CCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCC-CCCEEEe--cccccCC
Confidence 1367788853 2233222 28899999999999999999975 332211 0011111 2788776 7888664
Q ss_pred Cc-eEEEEecch
Q 023191 264 RG-AMIFFRKGV 274 (286)
Q Consensus 264 ~g-G~l~~~~~~ 274 (286)
.. |++..++++
T Consensus 300 ~Pi~av~~~~~~ 311 (459)
T PRK06931 300 LPLAVLGIKKEF 311 (459)
T ss_pred cceeeeeeHHHH
Confidence 33 777777664
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0011 Score=57.61 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=60.8
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--cceEEEe
Q 023191 183 DYDQLEKSATLFRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTT 254 (286)
Q Consensus 183 d~e~l~~~i~~~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~ 254 (286)
|.++|+..+++.+.+++++.|-. -|.+.| +++..++|.+||+++|.|+.|..-.....+..-..+ -.|+++.
T Consensus 195 d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivil 274 (427)
T KOG1402|consen 195 DAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVIL 274 (427)
T ss_pred CHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEE
Confidence 78999999987677888876333 443332 899999999999999999998632222222110111 1677764
Q ss_pred CCCCCCCCC-Cc-eEEEEecchhhhhcc
Q 023191 255 TTHKSLRGP-RG-AMIFFRKGVKEINKQ 280 (286)
Q Consensus 255 s~~K~l~gp-~g-G~l~~~~~~~~~~~~ 280 (286)
.|.|.|. .. ..+++.+++....|-
T Consensus 275 --gKalSGG~~Pvsavl~~~~im~~~~p 300 (427)
T KOG1402|consen 275 --GKALSGGVYPVSAVLADDDIMLNIKP 300 (427)
T ss_pred --eccccCCeeeeEEEEecHHHHhccCC
Confidence 5777553 22 555566665544553
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0052 Score=57.03 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=51.6
Q ss_pred HHHHHHHhhh--cCCcEEEEc--CCCCCC----ccCHHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEE
Q 023191 184 YDQLEKSATL--FRPKLIVAG--ASAYAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVV 252 (286)
Q Consensus 184 ~e~l~~~i~~--~~tk~v~i~--~~n~g~----~~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v 252 (286)
++++++.+.. .++.+|++. ..+.|. ...+++|.++|++||+++|+|++|. +|...... ....+ ..|++
T Consensus 205 l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv-~PDi~ 283 (431)
T TIGR03251 205 LRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV-QPDIV 283 (431)
T ss_pred HHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCC-CCCEE
Confidence 4555666642 367888886 333343 2359999999999999999999987 43321110 01111 27888
Q ss_pred EeCCCCCCCCCCceEEEEe
Q 023191 253 TTTTHKSLRGPRGAMIFFR 271 (286)
Q Consensus 253 ~~s~~K~l~gp~gG~l~~~ 271 (286)
++ .|.+ |.+|++..+
T Consensus 284 ~~--gK~~--~~~g~~~~~ 298 (431)
T TIGR03251 284 AF--GKKT--QVCGIMAGR 298 (431)
T ss_pred Ee--cccC--ccceEEecc
Confidence 64 5655 555777554
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0024 Score=58.61 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=56.6
Q ss_pred HHHHHHHhhhc---CCcEEEEcCCC---CCCc-cC---HHHHHHHHHhcCCEEEEecccccccccc-CCCC-CCCC-cce
Q 023191 184 YDQLEKSATLF---RPKLIVAGASA---YARL-YD---YERIRKVCNKQKAIMLADMAHISGLVAA-GVIP-SPFE-YAD 250 (286)
Q Consensus 184 ~e~l~~~i~~~---~tk~v~i~~~n---~g~~-~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~-~~~~-~~~~-~~D 250 (286)
.++|+++|..+ +..++++.|-- -|.. .| ++++.++|++||+++|.|+. ..|.--- .++. ..+. ..|
T Consensus 200 a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV-~tGFGRTG~~FA~e~~gi~PD 278 (449)
T COG0161 200 ADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEV-ATGFGRTGKMFACEHAGIVPD 278 (449)
T ss_pred HHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecc-eeCCCcCchhhhhhhcCCCCC
Confidence 66788888763 44566665333 2322 22 89999999999999999998 2221100 1110 0000 156
Q ss_pred EEEeCCCCCCCCCCc--eEEEEecchhhhhccC
Q 023191 251 VVTTTTHKSLRGPRG--AMIFFRKGVKEINKQG 281 (286)
Q Consensus 251 ~v~~s~~K~l~gp~g--G~l~~~~~~~~~~~~~ 281 (286)
+++ ..|.+.|..- |.+++++++-+...++
T Consensus 279 i~~--~aKGLT~GY~Pl~a~l~~~~I~~~~~~~ 309 (449)
T COG0161 279 ILC--LAKGLTGGYLPLSAVLTSDRIYEAFSDG 309 (449)
T ss_pred eee--ecccccccchhhHhHhhhHHHHHHHhcc
Confidence 665 5688866544 7777777766655543
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0071 Score=56.51 Aligned_cols=51 Identities=12% Similarity=0.218 Sum_probs=38.3
Q ss_pred CHHHHHHHhhhc--CCcEEEEcC--CCCCCccC----HHHHHHHHHhcCCEEEEecccc
Q 023191 183 DYDQLEKSATLF--RPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI 233 (286)
Q Consensus 183 d~e~l~~~i~~~--~tk~v~i~~--~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~ 233 (286)
+++.+++++.++ ++.+|++.| .+.|...+ +++|.++|++||+++|+|++|.
T Consensus 237 ~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~t 295 (464)
T TIGR00699 237 CLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQT 295 (464)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeee
Confidence 456677777542 567888863 33454444 9999999999999999999984
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.03 Score=50.30 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=61.6
Q ss_pred CHHHHHHHhhhcC--CcEEEEcCCC-CCC-----ccCHHHHHHHHHhcCCEEEEeccccc-cccccCCCCCCCC-cceEE
Q 023191 183 DYDQLEKSATLFR--PKLIVAGASA-YAR-----LYDYERIRKVCNKQKAIMLADMAHIS-GLVAAGVIPSPFE-YADVV 252 (286)
Q Consensus 183 d~e~l~~~i~~~~--tk~v~i~~~n-~g~-----~~~l~~I~~ia~~~~~~vivD~a~~~-g~~~~~~~~~~~~-~~D~v 252 (286)
|..++++.++.++ ..+|++.|-. .|. ..-+..|.++|+++|+++|.|+.+.. |-.........+. ..|+.
T Consensus 192 d~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~ 271 (433)
T KOG1401|consen 192 DSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDIT 271 (433)
T ss_pred CHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcce
Confidence 7899999998855 5678886333 332 22377899999999999999999752 2111110000001 14554
Q ss_pred EeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 253 TTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 253 ~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+.-|.++|.-- |+..+++++.+...
T Consensus 272 --t~aK~L~gGlPigA~~v~~kV~~~i~ 297 (433)
T KOG1401|consen 272 --TVAKPLGGGLPIGATGVRDKVAEMIS 297 (433)
T ss_pred --eehhhccCCceeEEEeehHHHHhhcC
Confidence 45688866544 88888888776555
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.033 Score=49.04 Aligned_cols=229 Identities=16% Similarity=0.169 Sum_probs=125.4
Q ss_pred hhhccccccccChHHHHHHHHHHHHH--HcCceecCC-------CCCCCHHHHHHhccccccCCCCCCCCCcccCCcchH
Q 023191 20 PKQLNAPLEVVDPEIADIIEHEKARQ--WKGLELIPS-------ENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI 90 (286)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~L~~~-------e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 90 (286)
+++|.+. .--||+.+--+.+..++. ...+||..| .++.=+.|++|-.+.+..... .-|.+-.+.
T Consensus 25 ~s~~s~V-~maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ld------KEYlpI~Gl 97 (427)
T KOG1411|consen 25 SSWWSHV-EMAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLD------KEYLPITGL 97 (427)
T ss_pred cchhhcC-CCCCCCCcccHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhccc------chhccccch
Confidence 3444333 333444444445444333 245788654 334567777776654432110 113444566
Q ss_pred HHHHHHHHHHHHHHCCCCCCCcc----eeEEeCCChHHHH--HHHHHhcCCCCeEEeccCCCCcccCccccccccccccc
Q 023191 91 DMAESLCQKRALEAFRLDPEKWG----VNVQSLSGSPSNF--QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 164 (286)
Q Consensus 91 ~~l~~~~~~~~~~~~g~~~~~~~----~~v~~~sG~~a~~--~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
.++.+...+.+ ||-+.+... +.+...||+.++. +-|.+..-++..|.+++|.++-| ......+
T Consensus 98 ~eF~k~sakLa---~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh--------~~if~~a 166 (427)
T KOG1411|consen 98 AEFNKLSAKLA---LGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNH--------KNIFKDA 166 (427)
T ss_pred HHHHHHHHHHh---hcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCccccc--------Ccccccc
Confidence 67665544432 444221100 2355556665332 24444456799999999555444 3344556
Q ss_pred eeeeEEEecccCCCCCCCCHHHHHHHhhhcCC-cEEEE--cCCC-CC---CccCHHHHHHHHHhcCCEEEEecccccccc
Q 023191 165 SIFFETMPYRLNESTGYIDYDQLEKSATLFRP-KLIVA--GASA-YA---RLYDYERIRKVCNKQKAIMLADMAHISGLV 237 (286)
Q Consensus 165 g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~t-k~v~i--~~~n-~g---~~~~l~~I~~ia~~~~~~vivD~a~~~g~~ 237 (286)
|..+....+ .++.+..+|.+.+.+.+.+.-. ..|++ |.+| +| +....++|.++.++.+.+-+.|.| +-|.-
T Consensus 167 g~~~~~yrY-yd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmA-YQGfa 244 (427)
T KOG1411|consen 167 GLPVKFYRY-YDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMA-YQGFA 244 (427)
T ss_pred Ccceeeeee-ccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhh-hcccc
Confidence 655555543 3446778999887777765222 34444 4666 55 455688999999999999999998 34433
Q ss_pred ccCCCCCC------C-Ccce-EEEeCCCCCC--CCCCceEE
Q 023191 238 AAGVIPSP------F-EYAD-VVTTTTHKSL--RGPRGAMI 268 (286)
Q Consensus 238 ~~~~~~~~------~-~~~D-~v~~s~~K~l--~gp~gG~l 268 (286)
..++...- + .+.+ +++-|+-|.+ .|-+-|.+
T Consensus 245 SG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~ 285 (427)
T KOG1411|consen 245 SGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGAL 285 (427)
T ss_pred cCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhcccee
Confidence 33322110 0 1233 5677888876 34444554
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0027 Score=55.80 Aligned_cols=157 Identities=14% Similarity=0.042 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC----CC--CeEEeccCCCCcccCccccccccccc
Q 023191 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK----PH--DRIMALDLPHGGHLSHGYQTDTKKIS 162 (286)
Q Consensus 90 ~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~----~G--d~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (286)
..+|++.+|+.-.-.=++..+. --|++++|++ ++.+++.++.. .+ -.|+... |.|+.|+....
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~g--r~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~a--------PYY~~Y~~qt~ 114 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDG--RYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAA--------PYYSSYPEQTD 114 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TT--SEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-S--------S--CHHHHHCC
T ss_pred cHHHHHHHHHHHHHhccccccC--cEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecC--------CCccchHHHHH
Confidence 4677777765444333443332 2599999999 77777777732 22 2566666 55555554433
Q ss_pred cceee-eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCC
Q 023191 163 AVSIF-FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 241 (286)
Q Consensus 163 ~~g~~-~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~ 241 (286)
+..-. ++.. -|...+. + . +...+-+=+++.||||.-. +.+ .+++.-+..+|.|-|++.+....
T Consensus 115 ~f~s~~y~w~---Gda~~~~-~------~-~~~~~~IElVTSPNNPDG~-lr~--~V~~g~~~k~I~D~AYYWPhyTp-- 178 (363)
T PF04864_consen 115 FFDSRLYKWA---GDASNFK-N------S-DNPSPYIELVTSPNNPDGQ-LRE--AVLNGSSGKVIHDLAYYWPHYTP-- 178 (363)
T ss_dssp CT-BTTEEEE---EECCCGT-T--------S-CCGEEEEEESS-TTT---------SSTTTEEEEEEE-TT-STTTS---
T ss_pred hccccCcccc---ccHHhhc-c------C-CCCCCeEEEEeCCCCCccc-ccc--hhcCCCCcceeeeeeeecccccc--
Confidence 33211 1111 1111221 0 0 0102333356767766211 111 12344566789999988775531
Q ss_pred CCCCCCcceEEEeCCCCCCCCCCc---eEEEEecch
Q 023191 242 IPSPFEYADVVTTTTHKSLRGPRG---AMIFFRKGV 274 (286)
Q Consensus 242 ~~~~~~~~D~v~~s~~K~l~gp~g---G~l~~~~~~ 274 (286)
...+ ..-|+..++.+| +.|..| |+.++|++-
T Consensus 179 I~~~-aD~DiMLFT~SK-~TGHAGSR~GWAlVKD~~ 212 (363)
T PF04864_consen 179 ITAP-ADHDIMLFTLSK-LTGHAGSRFGWALVKDEE 212 (363)
T ss_dssp --S--B--SEEEEEHHH-HCS-GGG-EEEEEES-HH
T ss_pred cCCC-CCCceEEEEEec-ccCccccccceeeecCHH
Confidence 1112 125799999999 556555 999999863
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=52.84 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEE--EeCCCCCCCCCCc-eEEEEecchhhhhcc
Q 023191 212 YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVV--TTTTHKSLRGPRG-AMIFFRKGVKEINKQ 280 (286)
Q Consensus 212 l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v--~~s~~K~l~gp~g-G~l~~~~~~~~~~~~ 280 (286)
+++..++|+++|.++|.|++|..--.. + +-+.++.-|++ +-+.-|.+++... |.+++..+..+.+.+
T Consensus 235 lka~~~~v~k~Ggl~IaDEVqtGfGRt-G-~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~ 304 (442)
T KOG1404|consen 235 LKAAYKVVRKRGGLFIADEVQTGFGRT-G-HMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQ 304 (442)
T ss_pred HHHHHHHHHHcCCEEEehhhhhccccc-c-ccccccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHh
Confidence 899999999999999999998631111 1 33344422232 3345688876655 888888888877664
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.073 Score=53.18 Aligned_cols=91 Identities=16% Similarity=0.080 Sum_probs=57.1
Q ss_pred HHHHHHhhh-------cCCcEEEEcCC--CC-CCcc----CHHHHHHHHHhcCCEEEEeccccccc-cccCCCCCC-CC-
Q 023191 185 DQLEKSATL-------FRPKLIVAGAS--AY-ARLY----DYERIRKVCNKQKAIMLADMAHISGL-VAAGVIPSP-FE- 247 (286)
Q Consensus 185 e~l~~~i~~-------~~tk~v~i~~~--n~-g~~~----~l~~I~~ia~~~~~~vivD~a~~~g~-~~~~~~~~~-~~- 247 (286)
+.+++.+.+ .+..+|++.|- .. |... -++.+.++|++||+++|.|+++. |. -........ +.
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~T-GfGRtG~~fa~e~~gv 645 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFT-GLWRLGVESAWELLGC 645 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeeccc-CCCcccchhhHHhcCC
Confidence 556666642 25677888762 33 3222 28899999999999999999964 22 111111110 11
Q ss_pred cceEEEeCCCCCCCCCC--ceEEEEecchhhhh
Q 023191 248 YADVVTTTTHKSLRGPR--GAMIFFRKGVKEIN 278 (286)
Q Consensus 248 ~~D~v~~s~~K~l~gp~--gG~l~~~~~~~~~~ 278 (286)
..|+++ +.|.++|.. -|++++++++.+..
T Consensus 646 ~PDIi~--~gKgLtgG~~Plaa~l~~~~I~~~f 676 (817)
T PLN02974 646 KPDIAC--YAKLLTGGLVPLAATLATEEVFEAF 676 (817)
T ss_pred CCCEEe--ecccccCCCCccEEEEEcHHHHHhh
Confidence 267776 468887652 38888888877654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.022 Score=54.07 Aligned_cols=155 Identities=12% Similarity=0.146 Sum_probs=94.2
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
.+..+.++.|++... .=+.--|+.+..++..+. .+.+.+.++....|+...+.... .+.-.|.+++
T Consensus 168 yQTmi~dlTGL~~aN---ASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~T----Ra~~~~i~v~------ 234 (1001)
T KOG2040|consen 168 YQTMITDLTGLPMAN---ASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKT----RAKGFGIKVV------ 234 (1001)
T ss_pred hHHhhhhccCCcccc---hhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhc----cccccceeEE------
Confidence 457788888887643 123345665444333333 67778888888888877653321 1122222211
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEE
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (286)
..|+++..... + +...+++..++ .|.+.+..++++.+++.+..+++- ..+..+.+...|.+ |+|+++
T Consensus 235 -----~~~~~~~~~s~-~-~v~gvlvQYP~t~G~i~d~~el~~~a~~~~s~vv~a----tDLLaLtiLrpPgefGaDIav 303 (1001)
T KOG2040|consen 235 -----VSDIKEADYSS-K-DVSGVLVQYPDTEGSVLDFDELVELAHANGSLVVMA----TDLLALTILRPPGEFGADIAV 303 (1001)
T ss_pred -----ecCHHHhhccc-c-ceeEEEEEcCCCCCcccCHHHHHHHhhccCceEEEe----ehhhHHHccCChhhcCceeee
Confidence 12333332222 2 46778887555 779999999999999999876653 22333344445545 699999
Q ss_pred eCCCC-----CCCCCCceEEEEecchh
Q 023191 254 TTTHK-----SLRGPRGAMIFFRKGVK 275 (286)
Q Consensus 254 ~s~~K-----~l~gp~gG~l~~~~~~~ 275 (286)
+|+.. .++||..||+.+++++.
T Consensus 304 GSsQRFGVPlGYGGPHAaFfAv~~~l~ 330 (1001)
T KOG2040|consen 304 GSSQRFGVPLGYGGPHAAFFAVSESLV 330 (1001)
T ss_pred ccccccCccccCCCchHHHHHHHHHHH
Confidence 99987 23566667777766544
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.005 Score=57.36 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=51.8
Q ss_pred HHHHHHHhhh--cCCcEEEEc--CCCCCC----ccCHHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEE
Q 023191 184 YDQLEKSATL--FRPKLIVAG--ASAYAR----LYDYERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVV 252 (286)
Q Consensus 184 ~e~l~~~i~~--~~tk~v~i~--~~n~g~----~~~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v 252 (286)
++++++.+.. .++.+|++. ..+-|. ...+++|.++|++||+++|.|+++. +|-..... ...++ ..|++
T Consensus 212 ~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv 290 (443)
T PRK08297 212 LAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV-RPDIV 290 (443)
T ss_pred HHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCC-CCCEE
Confidence 4566677753 367888886 333342 2348999999999999999999975 33321110 01111 27888
Q ss_pred EeCCCCCCCCCCceEEEEe
Q 023191 253 TTTTHKSLRGPRGAMIFFR 271 (286)
Q Consensus 253 ~~s~~K~l~gp~gG~l~~~ 271 (286)
+ +.|.+ |.+|++..+
T Consensus 291 ~--~gK~l--~~~a~l~~~ 305 (443)
T PRK08297 291 A--FGKKT--QVCGIMAGR 305 (443)
T ss_pred E--ecccc--cccceecch
Confidence 6 48877 345666554
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.066 Score=46.62 Aligned_cols=142 Identities=16% Similarity=0.208 Sum_probs=83.5
Q ss_pred eEEeCCChHHHHH---HHHHhcCCCCeEEeccCCCCcccCccccccccccccce-eeeEEEecccCCCCCCCCHHHHHHH
Q 023191 115 NVQSLSGSPSNFQ---VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS-IFFETMPYRLNESTGYIDYDQLEKS 190 (286)
Q Consensus 115 ~v~~~sG~~a~~~---~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~d~e~l~~~ 190 (286)
.|...+|+.|+.. .+..+++ ...|.+..|.+..|.. ..+-+| ..+...++ .+.++..+|++.+...
T Consensus 102 ~vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~--------if~~aGf~tv~~Y~y-Wd~~~k~~d~e~~Lsd 171 (410)
T KOG1412|consen 102 GVQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHA--------IFEKAGFTTVATYPY-WDAENKCVDLEGFLSD 171 (410)
T ss_pred ceeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHHH--------HHHHcCCceeeeeee-ecCCCceecHHHHHHH
Confidence 3566666664432 3334444 5668888855544432 222333 22333443 3445678999999888
Q ss_pred hhhcCC-cEEE-E--cCCC-CC---CccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC------C-cc-eEEEe
Q 023191 191 ATLFRP-KLIV-A--GASA-YA---RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF------E-YA-DVVTT 254 (286)
Q Consensus 191 i~~~~t-k~v~-i--~~~n-~g---~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~------~-~~-D~v~~ 254 (286)
+.. .| +.|+ + |.+| +| +.....+|++..++.+.+.+.|.| +-|.-..+.....+ + +. =+++-
T Consensus 172 l~~-APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiA-YQGfASGD~~~DawAiR~fV~~g~e~fv~Q 249 (410)
T KOG1412|consen 172 LES-APEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIA-YQGFASGDLDADAWAIRYFVEQGFELFVCQ 249 (410)
T ss_pred Hhh-CCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehh-hcccccCCccccHHHHHHHHhcCCeEEEEh
Confidence 876 44 3343 3 3566 55 344577899999999999999998 44544444322111 1 22 26788
Q ss_pred CCCCCC--CCCCceEE
Q 023191 255 TTHKSL--RGPRGAMI 268 (286)
Q Consensus 255 s~~K~l--~gp~gG~l 268 (286)
|+.|.| .+++-|-+
T Consensus 250 SFaKNfGlYneRvGnl 265 (410)
T KOG1412|consen 250 SFAKNFGLYNERVGNL 265 (410)
T ss_pred hhhhhcccccccccce
Confidence 999976 45665543
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.016 Score=49.18 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=63.1
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEE-E-c-CCCC-C-CccCHHHHHHHHHhcCCEEEEecccccccc------ccCCCCC
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIV-A-G-ASAY-A-RLYDYERIRKVCNKQKAIMLADMAHISGLV------AAGVIPS 244 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~-i-~-~~n~-g-~~~~l~~I~~ia~~~~~~vivD~a~~~g~~------~~~~~~~ 244 (286)
+.+...-|++.+++.+.+-.+..|+ + + .+-+ | ....+++|+.||..|+++-++..|++.-.. ...-...
T Consensus 135 d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~g 214 (432)
T KOG3843|consen 135 DGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECG 214 (432)
T ss_pred cchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhc
Confidence 4344567999999999875565443 3 2 2223 3 456699999999999999999998543211 1111112
Q ss_pred CCCcceEEEeCCCCCCCCCCceEEEE
Q 023191 245 PFEYADVVTTTTHKSLRGPRGAMIFF 270 (286)
Q Consensus 245 ~~~~~D~v~~s~~K~l~gp~gG~l~~ 270 (286)
. +|.++-|..|.|..|-||.+..
T Consensus 215 r---ida~vqsldknf~vpvggaiia 237 (432)
T KOG3843|consen 215 R---IDAFVQSLDKNFMVPVGGAIIA 237 (432)
T ss_pred c---HHHHHHHhhhcceeecchhHhh
Confidence 2 8999999999999999966543
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.05 Score=48.13 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=48.3
Q ss_pred HHHHHHHhhhcC----C-cEEEEc------CCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCC---CCCCC-c
Q 023191 184 YDQLEKSATLFR----P-KLIVAG------ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI---PSPFE-Y 248 (286)
Q Consensus 184 ~e~l~~~i~~~~----t-k~v~i~------~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~---~~~~~-~ 248 (286)
++++|++|.+++ | .++++. ..|.+...-++.+.+++++|++.+|+|+.|..|--...+. .+.++ =
T Consensus 255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P 334 (484)
T KOG1405|consen 255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP 334 (484)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence 567777776532 3 456663 2334466679999999999999999999998665444432 12232 2
Q ss_pred ceEEEeC
Q 023191 249 ADVVTTT 255 (286)
Q Consensus 249 ~D~v~~s 255 (286)
.|++++|
T Consensus 335 pD~vTFS 341 (484)
T KOG1405|consen 335 PDVVTFS 341 (484)
T ss_pred ccceehh
Confidence 7888765
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.11 Score=45.12 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCc----ceEEEeCCCCCCCC-CCceEEEEecchhhhhc
Q 023191 212 YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEY----ADVVTTTTHKSLRG-PRGAMIFFRKGVKEINK 279 (286)
Q Consensus 212 l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~----~D~v~~s~~K~l~g-p~gG~l~~~~~~~~~~~ 279 (286)
++++++..+.+|-+.|.|+.|. |.--.+.+-|.+.- .|+++ ..|-++. .+-+.+.+.+++.++..
T Consensus 232 Fq~Va~~Vr~aGGv~IaDEVQv-GFGRvG~hyWafq~y~fiPDIVt--mgKpmGNGhPVa~VattkeIA~Af~ 301 (452)
T KOG1403|consen 232 FQAVADAVRSAGGVCIADEVQV-GFGRVGSHYWAFQTYNFIPDIVT--MGKPMGNGHPVAAVATTKEIAQAFH 301 (452)
T ss_pred HHHHHHHHhcCCCeEEeehhhh-cccccchhhhhhhhhccccchhe--ecccCCCCCeeeEEeccHHHHHHhc
Confidence 7899999999999999999974 33222333333331 45554 3465543 33488888887776554
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.44 Score=41.13 Aligned_cols=202 Identities=17% Similarity=0.133 Sum_probs=103.0
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCC-CCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC-hH-
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYP-GARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG-SP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG-~~- 123 (286)
..+|+.+|.-.+|..|+..+.+.+-+-..-|-. ....+.+ .....+-+.....+.++++++... .|++.-| .+
T Consensus 7 ~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRs-k~f~kii~~tes~lreLlniPdn~---~vlf~QGGGt~ 82 (370)
T KOG2790|consen 7 RVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRS-KDFAKIINDTESLLRELLNIPDNY---KVLFLQGGGTG 82 (370)
T ss_pred ceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccc-hhHHHHHHHHHHHHHHHHcCCCce---eEEEEeCCCcc
Confidence 578998888889999999888877662211211 0111112 222344445557788888986543 5666333 33
Q ss_pred HHHHHHHHh--cCCC---CeEEeccCCCCcccCccccccc-cccccceeeeEEEecccCCCC--CCCCHHHHHHHhhhcC
Q 023191 124 SNFQVYTAL--LKPH---DRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNEST--GYIDYDQLEKSATLFR 195 (286)
Q Consensus 124 a~~~~l~a~--~~~G---d~Vl~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~--~~~d~e~l~~~i~~~~ 195 (286)
-..++...+ ++.| |-|++-. |.... ..+.-.|...++.+ +...-+ -.+|.+.++. ++ +
T Consensus 83 qFaAv~lNL~glK~g~~AdYiVTGs----------WS~KA~~EAkk~~~~~~V~~-~~k~y~ygkvPd~~~w~~--~~-d 148 (370)
T KOG2790|consen 83 QFAAVPLNLIGLKHGRCADYVVTGS----------WSAKAAEEAKKYGTPNIVIP-KLKSYTYGKVPDPSTWEL--NP-D 148 (370)
T ss_pred cccccchhhhccccCCccceEEecc----------ccHHHHHHHHhhCCceEEec-cccccccCcCCChhhccc--CC-C
Confidence 222233333 3555 3344311 11000 01122222122222 222122 2456665543 22 4
Q ss_pred CcEEEEcCCC--CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEec
Q 023191 196 PKLIVAGASA--YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRK 272 (286)
Q Consensus 196 tk~v~i~~~n--~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~ 272 (286)
.+.|+.|... .|...+ ++- +-.-++.+++.|-+.-+-.-+.|+.. -++++....|.+ ||-| -++++|+
T Consensus 149 a~yvyyCaNETVHGVEf~--~~P-~~~~~~~vlVaDmSSnflSrpvDvsk-----~gvi~aGAQKN~-G~aG~Tvvivr~ 219 (370)
T KOG2790|consen 149 ASYVYYCANETVHGVEFD--FIP-VNDPKGAVLVADMSSNFLSRPVDVSK-----FGVIFAGAQKNV-GPAGVTVVIVRK 219 (370)
T ss_pred ccEEEEecCceeeceecC--CCC-CCCCCCceEEEecccchhcCCccchh-----cceEEecccccc-CccccEEEEEeh
Confidence 5677777333 342221 100 12346889999987433333333322 458999999988 6777 8888888
Q ss_pred chh
Q 023191 273 GVK 275 (286)
Q Consensus 273 ~~~ 275 (286)
++.
T Consensus 220 dll 222 (370)
T KOG2790|consen 220 DLL 222 (370)
T ss_pred hhh
Confidence 754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 286 | ||||
| 3ou5_A | 490 | Human Mitochondrial Serine Hydroxymethyltransferase | 1e-103 | ||
| 1bj4_A | 470 | Recombinant Serine Hydroxymethyltransferase (human) | 2e-95 | ||
| 1ls3_B | 483 | Crystal Structure Of The Complex Between Rabbit Cyt | 8e-95 | ||
| 1cj0_A | 470 | Crystal Structure Of Rabbit Cytosolic Serine Hydrox | 1e-94 | ||
| 1rvu_A | 483 | E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethy | 2e-94 | ||
| 1rv3_A | 483 | E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethy | 6e-94 | ||
| 1eji_A | 478 | Recombinant Serine Hydroxymethyltransferase (Mouse) | 5e-92 | ||
| 2vmn_A | 405 | Crystal Structure Of N341absshmt Internal Aldimine | 2e-61 | ||
| 1kkj_A | 419 | Crystal Structure Of Serine Hydroxymethyltransferas | 3e-61 | ||
| 2vmv_A | 405 | Crystal Structure Of F351gbsshmt Internal Aldimine | 3e-61 | ||
| 2vi8_A | 405 | Crystal Structure Of S172absshmt Internal Aldimine | 6e-61 | ||
| 1yjs_A | 419 | K226q Mutant Of Serine Hydroxymethyltransferase Fro | 7e-61 | ||
| 2w7d_A | 405 | Crystal Structure Of Y51fbsshmt Internal Aldimine L | 7e-61 | ||
| 2vgs_A | 407 | Crystal Structure Of E53qbsshmt Internal Aldimine L | 8e-61 | ||
| 3pgy_A | 415 | Serine Hydroxymethyltransferase From Staphylococcus | 9e-61 | ||
| 1yjy_A | 419 | K226m Mutant Of Serine Hydroxymethyltransferase Fro | 1e-60 | ||
| 2w7i_A | 405 | Crystal Structure Of Y61absshmt Internal Aldimine L | 3e-60 | ||
| 2vmr_A | 405 | Crystal Structure Of Y60absshmt Internal Aldimine L | 3e-60 | ||
| 3n0l_A | 417 | Crystal Structure Of Serine Hydroxymethyltransferas | 2e-59 | ||
| 2dkj_A | 407 | Crystal Structure Of T.Th.Hb8 Serine Hydroxymethylt | 5e-59 | ||
| 1dfo_A | 417 | Crystal Structure At 2.4 Angstrom Resolution Of E. | 2e-57 | ||
| 1eqb_A | 417 | X-Ray Crystal Structure At 2.7 Angstroms Resolution | 4e-57 | ||
| 3g8m_A | 417 | Serine Hydroxymethyltransferase Y55f Mutant Length | 4e-57 | ||
| 3h7f_A | 447 | Crystal Structure Of Serine Hydroxymethyltransferas | 3e-56 | ||
| 3gbx_A | 420 | Serine Hydroxymethyltransferase From Salmonella Typ | 7e-53 | ||
| 3ecd_A | 425 | Crystal Structure Of Serine Hydroxymethyltransferas | 2e-50 |
| >pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2 Length = 490 | Back alignment and structure |
|
| >pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human) Length = 470 | Back alignment and structure |
|
| >pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic Serine Hydroxymethyltransferase And Triglu-5-Formyl-Tetrahydrofolate Length = 483 | Back alignment and structure |
|
| >pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine Hydroxymethyltransferase At 2.8 Angstrom Resolution Length = 470 | Back alignment and structure |
|
| >pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase Length = 483 | Back alignment and structure |
|
| >pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase, Complex With Glycine Length = 483 | Back alignment and structure |
|
| >pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse) Length = 478 | Back alignment and structure |
|
| >pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From B.Stearothermophilus Length = 419 | Back alignment and structure |
|
| >pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Glycine Length = 419 | Back alignment and structure |
|
| >pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine Length = 407 | Back alignment and structure |
|
| >pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus Aureus, S95p Mutant. Length = 415 | Back alignment and structure |
|
| >pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Serine Length = 419 | Back alignment and structure |
|
| >pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine Length = 405 | Back alignment and structure |
|
| >pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Campylobacter Jejuni Length = 417 | Back alignment and structure |
|
| >pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine Hydroxymethyltransferase Length = 407 | Back alignment and structure |
|
| >pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli Serine Hydroxymethyltransferase In Complex With Glycine And 5-Formyl Tetrahydrofolate Length = 417 | Back alignment and structure |
|
| >pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate Length = 417 | Back alignment and structure |
|
| >pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant Length = 417 | Back alignment and structure |
|
| >pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Mycobacterium Tuberculosis Length = 447 | Back alignment and structure |
|
| >pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella Typhimurium Length = 420 | Back alignment and structure |
|
| >pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Burkholderia Pseudomallei Length = 425 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Length = 483 | Back alignment and structure |
|---|
Score = 532 bits (1373), Expect = 0.0
Identities = 166/280 (59%), Positives = 211/280 (75%), Gaps = 3/280 (1%)
Query: 7 EAVYEKEKNGVTWP---KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVM 63
AV ++ W + L PL+ D E+ DII+ E RQ GLELI SENF S +V+
Sbjct: 2 TAVNGAPRDAALWSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVL 61
Query: 64 QAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123
+A+GS + NKYS GYPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGSP
Sbjct: 62 EALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSP 121
Query: 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 183
+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYID
Sbjct: 122 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYID 181
Query: 184 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243
YD+LE++A LF PKLI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+P
Sbjct: 182 YDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVP 241
Query: 244 SPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKE 283
SPFE+ VVTTTTHK+LRG R MIF+R+GV+ ++ + +
Sbjct: 242 SPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGK 281
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A Length = 490 | Back alignment and structure |
|---|
Score = 525 bits (1355), Expect = 0.0
Identities = 171/282 (60%), Positives = 213/282 (75%), Gaps = 2/282 (0%)
Query: 2 SSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVS 61
+ N A + + W L DPE+ ++++ EK RQ +GLELI SENF S +
Sbjct: 12 AQHSNAAQTQTGEANRGWTG--QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRA 69
Query: 62 VMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121
++A+GS + NKYSEGYPG RYYGG E +D E LCQ+RALEAF LDP +WGVNVQ SG
Sbjct: 70 ALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG 129
Query: 122 SPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY 181
SP+N VYTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN TG
Sbjct: 130 SPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGL 189
Query: 182 IDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 241
IDY+QL +A LFRP+LI+AG SAYARL DY R+R+VC++ KA +LADMAHISGLVAA V
Sbjct: 190 IDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKV 249
Query: 242 IPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKE 283
IPSPF++AD+VTTTTHK+LRG R +IF+RKGVK ++ +
Sbjct: 250 IPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGR 291
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... Length = 405 | Back alignment and structure |
|---|
Score = 347 bits (893), Expect = e-119
Identities = 119/257 (46%), Positives = 167/257 (64%), Gaps = 16/257 (6%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
L DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
EY+D+ E L ++RA + F + NVQ SG+ +N VY +L+ D ++ ++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 147 GGHLSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA 203
GGHL+HG S V+ + + Y ++ T IDYD + + A L RPKLIVA A
Sbjct: 120 GGHLTHG--------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAA 171
Query: 204 SAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 263
+AY R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGP
Sbjct: 172 AAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGP 231
Query: 264 RGAMIFFRKGV-KEINK 279
RG MI ++ K+I+K
Sbjct: 232 RGGMILCQEQFAKQIDK 248
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Length = 420 | Back alignment and structure |
|---|
Score = 347 bits (893), Expect = e-119
Identities = 120/260 (46%), Positives = 168/260 (64%), Gaps = 16/260 (6%)
Query: 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 83
+ D E+ +E EK RQ + +ELI SEN+TS VMQA GS +TNKY+EGYPG RY
Sbjct: 8 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 67
Query: 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 143
YGG EY+D+ E L RA E F D NVQ SGS +NF VYTALL+P D ++ ++
Sbjct: 68 YGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTVLGMN 123
Query: 144 LPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200
L GGHL+HG S V+ + +PY ++E +G IDYD++ K A +PK+I+
Sbjct: 124 LAQGGHLTHG--------SPVNFSGKLYNIVPYGIDE-SGKIDYDEMAKLAKEHKPKMII 174
Query: 201 AGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL 260
G SAY+ + D+ ++R++ + A + DMAH++GL+AAGV P+P +A VVTTTTHK+L
Sbjct: 175 GGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTL 234
Query: 261 RGPRGAMIFFRKGVKEINKQ 280
GPRG +I + G +E+ K+
Sbjct: 235 AGPRGGLILAKGGDEELYKK 254
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Length = 447 | Back alignment and structure |
|---|
Score = 346 bits (889), Expect = e-118
Identities = 115/278 (41%), Positives = 166/278 (59%), Gaps = 16/278 (5%)
Query: 6 NEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQA 65
+ + P ++APL VDP+IA+++ E RQ LE+I SENF +V+QA
Sbjct: 5 HHHHMGTLEAQTQGPGSMSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQA 64
Query: 66 VGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSN 125
GSV+TNKY+EG PG RYYGG E++D+ E+L + RA F + NVQ SG+ +N
Sbjct: 65 QGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGAQAN 120
Query: 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNESTGYI 182
V AL+ P +R++ LDL +GGHL+HG ++ +E Y ++ +T I
Sbjct: 121 AAVLHALMSPGERLLGLDLANGGHLTHG--------MRLNFSGKLYENGFYGVDPATHLI 172
Query: 183 DYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI 242
D D + +A FRPK+I+AG SAY R+ D+ R + ++ A +L DMAH +GLVAAG+
Sbjct: 173 DMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLH 232
Query: 243 PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGV-KEINK 279
PSP +ADVV+TT HK+L G R +I ++ K IN
Sbjct: 233 PSPVPHADVVSTTVHKTLGGGRSGLIVGKQQYAKAINS 270
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} Length = 407 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-118
Identities = 120/258 (46%), Positives = 161/258 (62%), Gaps = 17/258 (6%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
D + ++I E+ RQ +GLELI SENF S V +AVGSV+TNKY+EGYPGARYYGG
Sbjct: 4 TLKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGG 63
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
E ID ESL +RA F NVQ SGS +N VY AL++P D +M +DL
Sbjct: 64 CEVIDRVESLAIERAKALFGAA----WANVQPHSGSQANMAVYMALMEPGDTLMGMDLAA 119
Query: 147 GGHLSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA 203
GGHL+HG S V+ ++ + Y + T ID +++ + A RPK+IVAGA
Sbjct: 120 GGHLTHG--------SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGA 171
Query: 204 SAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 263
SAY R +D++ R++ ++ A ++ DMAH +GLVAAG+ P+P YA VVT+TTHK+LRGP
Sbjct: 172 SAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGP 231
Query: 264 RGAMIFFRKG--VKEINK 279
RG +I K I+K
Sbjct: 232 RGGLILSNDPELGKRIDK 249
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} Length = 425 | Back alignment and structure |
|---|
Score = 344 bits (885), Expect = e-118
Identities = 108/262 (41%), Positives = 148/262 (56%), Gaps = 17/262 (6%)
Query: 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGAR 82
+ L D + I E RQ +ELI SEN S +V+ A GSV+TNKY+EGYPG R
Sbjct: 9 FSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKR 68
Query: 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMAL 142
YYGG E+ D E+L +R F NVQ SG+ +N V AL KP D ++ +
Sbjct: 69 YYGGCEFADEVEALAIERVKRLFNAG----HANVQPHSGAQANGAVMLALAKPGDTVLGM 124
Query: 143 DLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199
L GGHL+HG + ++ +F + Y ++ T IDYDQ+E A +P LI
Sbjct: 125 SLDAGGHLTHG--------AKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLI 176
Query: 200 VAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKS 259
+AG SAY R D+ R R + + A ++ DMAHI+G++AAG +P E+A VVT+TTHK+
Sbjct: 177 IAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKT 236
Query: 260 LRGPRGAMIFFRKG--VKEINK 279
LRGPRG + K+IN
Sbjct: 237 LRGPRGGFVLTNDEEIAKKINS 258
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} Length = 417 | Back alignment and structure |
|---|
Score = 340 bits (874), Expect = e-116
Identities = 121/261 (46%), Positives = 165/261 (63%), Gaps = 18/261 (6%)
Query: 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 83
LE+ D EI D+ E RQ +GLE+I SENFT VM+ +GS++TNKY+EGYPG RY
Sbjct: 3 AMSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRY 62
Query: 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 143
YGG E++D E+L +R + F NVQ SGS +N VY AL+ P D+I+ +D
Sbjct: 63 YGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMD 118
Query: 144 LPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200
L HGGHL+HG + VS +E+ Y + G IDY+++ + A +PKLIV
Sbjct: 119 LSHGGHLTHG--------AKVSSSGKMYESCFYGVEL-DGRIDYEKVREIAKKEKPKLIV 169
Query: 201 AGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL 260
GASAYAR+ D+ + R++ ++ A + AD+AHI+GLV AG PSPF YA VV++TTHK+L
Sbjct: 170 CGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTL 229
Query: 261 RGPRGAMIFFRKGV--KEINK 279
RGPRG +I K+IN
Sbjct: 230 RGPRGGIIMTNDEELAKKINS 250
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 9e-05
Identities = 33/261 (12%), Positives = 68/261 (26%), Gaps = 50/261 (19%)
Query: 42 KARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101
+ + L + + + ++ +++ G Y G+E E
Sbjct: 29 QEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAYAGSENFYHLE------- 81
Query: 102 LEAFRLDPEKWGVN--VQSLSGSPSNFQVYTALLKPHDRIMA---LDLPHGGHLSHGYQT 156
+ E +G V + G + + +KP + +G
Sbjct: 82 -RTVQ---ELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNG--- 134
Query: 157 DTKKISAVSIFFETM--PYRLNESTGYIDYDQLEKSATLFRPKLI----------VAGAS 204
V I + G ID +L+K + I +AG
Sbjct: 135 ----AVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQ 190
Query: 205 AYARLYDYERIRKVCNKQKAIMLADMAHISG--------------LVAAGVIPSPFEYAD 250
+ + + +R++ + D A ++ F YAD
Sbjct: 191 PVS-MANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
Query: 251 VVTTTTHKSLRGPRGAMIFFR 271
T + K G +
Sbjct: 250 GCTMSGKKDCLVNIGGFLCMN 270
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 286 | |||
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 100.0 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 100.0 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 100.0 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 100.0 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 100.0 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.97 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.97 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.97 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.96 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.92 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.92 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.92 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.92 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.91 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.91 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.91 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.91 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.91 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.91 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.91 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.9 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.9 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.9 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.9 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.9 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.9 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.9 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.9 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.9 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.89 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.89 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.89 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.89 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.89 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.89 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.89 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.89 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.89 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.89 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.89 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.89 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.89 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.89 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.89 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.89 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.88 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.88 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.88 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.88 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.88 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.88 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.88 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.88 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.88 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.88 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.87 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.87 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.87 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.87 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.87 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.87 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.87 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.87 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.87 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.87 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.87 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.87 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.87 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.86 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.86 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.86 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.86 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.86 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.86 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.86 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.86 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.86 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.86 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.85 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.85 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.85 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.85 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.85 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.85 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.85 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.85 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.85 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.85 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.85 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.85 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.85 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.85 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.85 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.85 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.85 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.84 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.84 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.84 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.84 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.84 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.84 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.84 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.84 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.84 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.84 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.84 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.84 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.84 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.84 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.83 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.83 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.83 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.83 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.83 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.83 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.83 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.83 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.83 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.83 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.83 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.83 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.82 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.82 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.82 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.82 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.82 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.82 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.82 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.82 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.81 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.81 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.81 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.81 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.81 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.81 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.81 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.81 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.81 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.8 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.8 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.8 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.8 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.8 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.8 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.8 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.8 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.8 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.8 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.8 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.79 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.79 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.79 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.79 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.79 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.79 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.79 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.78 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.78 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.78 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.78 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.65 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.78 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.78 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.78 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.78 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.78 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.77 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.77 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.77 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.77 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.77 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.77 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.76 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.76 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.76 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.76 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.76 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.76 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.76 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.76 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.76 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.75 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.75 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.75 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.74 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.73 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.73 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.73 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.72 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.72 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.71 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.71 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.71 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.7 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.7 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.69 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.68 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.66 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.66 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.66 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.62 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.62 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.61 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.61 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.6 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.59 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.59 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.59 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.58 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.56 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.56 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.56 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.55 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.55 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.55 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.53 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.53 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.52 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.51 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.51 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.5 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.5 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.49 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.49 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.49 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.48 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.48 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.45 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.43 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.42 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.19 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 98.82 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.02 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 98.66 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 97.96 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 97.91 |
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-47 Score=338.42 Aligned_cols=255 Identities=66% Similarity=1.107 Sum_probs=208.2
Q ss_pred cccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (286)
++.++..+|+++..+.+|..|+...|+|+++||++|+.|++++...+.++|.+|||+.+||++++.++++|..++++.++
T Consensus 32 ~~~l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~ 111 (490)
T 3ou5_A 32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 111 (490)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHH
T ss_pred ccchhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCC
Q 023191 104 AFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 183 (286)
Q Consensus 104 ~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d 183 (286)
+||+++..|+++|++.||+.||++++.++++|||+|+..+..+++|++.++......+.+.|..+..++++++++++.+|
T Consensus 112 lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~ID 191 (490)
T 3ou5_A 112 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID 191 (490)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEEC
T ss_pred HhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999988755444566778888889999998889999
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCC
Q 023191 184 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 263 (286)
Q Consensus 184 ~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp 263 (286)
+|+++++..+++||+|+++.|.+++..|++++.+||++.|+++++|.||.+|++..+.+++|++++|++++|+||+|.||
T Consensus 192 yd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGP 271 (490)
T 3ou5_A 192 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 271 (490)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSC
T ss_pred HHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecchhhhh
Q 023191 264 RGAMIFFRKGVKEIN 278 (286)
Q Consensus 264 ~gG~l~~~~~~~~~~ 278 (286)
+||+|++|++....+
T Consensus 272 rGG~Il~~~~~~~~~ 286 (490)
T 3ou5_A 272 RSGLIFYRKGVKAVD 286 (490)
T ss_dssp SCEEEEEECSEEEEC
T ss_pred CceEEEecccccccc
Confidence 999999999765443
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=304.29 Aligned_cols=256 Identities=64% Similarity=1.057 Sum_probs=228.6
Q ss_pred chhhccccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHH
Q 023191 19 WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (286)
..+++++++..++++++..+..+..++.+.|+|+++++++|+.|++++.+.+.+.|.+||++.++|++....+++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~ 96 (483)
T 1rv3_A 17 HEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQ 96 (483)
T ss_dssp HHHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHH
Confidence 46667788889999999999998888888999999999999999999999999888888999889999899999999999
Q ss_pred HHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCC
Q 023191 99 KRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178 (286)
Q Consensus 99 ~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 178 (286)
+++++++|+++++|.++|++++|+.++++++.++++|||+|+++++.|+++..+++..++.++.+.|..++.++++++++
T Consensus 97 ~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~ 176 (483)
T 1rv3_A 97 KRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD 176 (483)
T ss_dssp HHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT
T ss_pred HHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccC
Confidence 99999999987655567999999988887799999999999999999999999988877777778887677788776766
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCC
Q 023191 179 TGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHK 258 (286)
Q Consensus 179 ~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K 258 (286)
++.+|+++|++++++.+||+|+++++|++...|+++|.++|+++|+++|+|++|+.|.+..+..+.++.++|++++|+||
T Consensus 177 ~~~iD~d~le~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K 256 (483)
T 1rv3_A 177 TGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHK 256 (483)
T ss_dssp TCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSG
T ss_pred CCcCCHHHHHHHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcc
Confidence 78999999999998449999999777766888999999999999999999999999998878777766679999999999
Q ss_pred CCCCCCceEEEEecch
Q 023191 259 SLRGPRGAMIFFRKGV 274 (286)
Q Consensus 259 ~l~gp~gG~l~~~~~~ 274 (286)
+|+||+||++++++++
T Consensus 257 ~l~GprgG~i~~~~~~ 272 (483)
T 1rv3_A 257 TLRGCRAGMIFYRRGV 272 (483)
T ss_dssp GGCCCSCEEEEEECSB
T ss_pred cCCCCCceEEEEcchh
Confidence 9999999999999864
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=297.97 Aligned_cols=250 Identities=67% Similarity=1.117 Sum_probs=187.3
Q ss_pred ccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 023191 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (286)
..++.++|+++..+.++..++.+.|+|+++++++|+.|++++.+.+.+.|.+||++.++|++.+..+++|+.++++++++
T Consensus 33 ~~l~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l 112 (490)
T 2a7v_A 33 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEA 112 (490)
T ss_dssp CCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999989899999999999888889999999999999
Q ss_pred CCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCH
Q 023191 105 FRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184 (286)
Q Consensus 105 ~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~ 184 (286)
||++.++|+++|++++|+.++.+++.++++|||+|+++++.|++++..++......+.+.|..++.++++++++++.+|+
T Consensus 113 ~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~ 192 (490)
T 2a7v_A 113 FDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDY 192 (490)
T ss_dssp TTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCH
T ss_pred cCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCH
Confidence 99988665456677788779998999999999999999999998876554322223345666566677777766789999
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCC
Q 023191 185 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPR 264 (286)
Q Consensus 185 e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~ 264 (286)
+++++++.+++||+|+++.+++|...|+++|.++|++||+++++|+||+.|.+..+..+.++.++|++++|+||+|+||+
T Consensus 193 d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp~ 272 (490)
T 2a7v_A 193 NQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGAR 272 (490)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCS
T ss_pred HHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCcccc
Confidence 99999997668999988877889888999999999999999999999999988777666666679999999999999999
Q ss_pred ceEEEEecch
Q 023191 265 GAMIFFRKGV 274 (286)
Q Consensus 265 gG~l~~~~~~ 274 (286)
||++++++++
T Consensus 273 GG~i~~~~~~ 282 (490)
T 2a7v_A 273 SGLIFYRKGV 282 (490)
T ss_dssp CEEEEEECSE
T ss_pred chheeeccch
Confidence 9999999864
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=253.27 Aligned_cols=250 Identities=44% Similarity=0.719 Sum_probs=204.7
Q ss_pred hhccccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHH
Q 023191 21 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (286)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (286)
..+...+..++++++..+.++.+++.+.|+|.++++++++.+++++.+.+.+.|..+|++.++|.+....+.+++..+++
T Consensus 20 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~ 99 (447)
T 3h7f_A 20 GSMSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDR 99 (447)
T ss_dssp CGGGCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHhCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHH
Confidence 56677888999999999998887878899999999999999999999999877877888888888888777777777799
Q ss_pred HHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCC
Q 023191 101 ALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180 (286)
Q Consensus 101 ~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 180 (286)
+++++|++. +.+++++|+.++.+++.++++|||+|+++++.|.+++..+. .+.+.|..++.++++++++++
T Consensus 100 la~~~g~~~----~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~ 170 (447)
T 3h7f_A 100 AKALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGM-----RLNFSGKLYENGFYGVDPATH 170 (447)
T ss_dssp HHHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHSSEEEEECCCTTTC
T ss_pred HHHHcCCCc----eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhh-----hhhhcCCeeEEEEcCcCcccC
Confidence 999999876 34557777668888999999999999999988877543332 122334445556666665678
Q ss_pred CCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCC
Q 023191 181 YIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL 260 (286)
Q Consensus 181 ~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l 260 (286)
.+|++++++++.+.++++|+++.++++...++++|.++|++||+++|+|++|+.|....+.....+.++|++++|+||+|
T Consensus 171 ~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l 250 (447)
T 3h7f_A 171 LIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTL 250 (447)
T ss_dssp SCCHHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGG
T ss_pred CcCHHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCC
Confidence 89999999999765899999976666766699999999999999999999998887665555555557899999999999
Q ss_pred CCCCceEEEEecchhhhhc
Q 023191 261 RGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 261 ~gp~gG~l~~~~~~~~~~~ 279 (286)
+||+||++++++++.+..+
T Consensus 251 ~G~~gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 251 GGGRSGLIVGKQQYAKAIN 269 (447)
T ss_dssp CCCSCEEEEECGGGHHHHH
T ss_pred CCCCeEEEEECHHHHHHHh
Confidence 9999999999988766544
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=246.26 Aligned_cols=244 Identities=48% Similarity=0.812 Sum_probs=194.3
Q ss_pred cccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHC
Q 023191 26 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAF 105 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (286)
.++.++++++..+.++..++.+.++|.++++++++.+++++.+.+.+.+..+|++.++|.+....+++++.+++++++++
T Consensus 5 ~~~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 84 (417)
T 3n0l_A 5 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLF 84 (417)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHh
Confidence 45678999999998877777789999999999999999999999877677778887788888888899999999999999
Q ss_pred CCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHH
Q 023191 106 RLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 185 (286)
Q Consensus 106 g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e 185 (286)
|+++ .+|++++|+.++.+++.++++|||+|+++++.|.++..++.. ....|..+..++++.+ +++.+|++
T Consensus 85 g~~~----~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~-~~~~~d~~ 154 (417)
T 3n0l_A 85 NCKF----ANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAK-----VSSSGKMYESCFYGVE-LDGRIDYE 154 (417)
T ss_dssp TCSE----EECCCSSHHHHHHHHHHHHSCTTCEEEEECC---------------------CCSEEEEECCC-TTSSCCHH
T ss_pred CCCC----cceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhh-----hhhhcceeeeEeccCC-CCCCcCHH
Confidence 9976 359999996688889999999999999999888776554432 2233444555666666 67889999
Q ss_pred HHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc
Q 023191 186 QLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG 265 (286)
Q Consensus 186 ~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g 265 (286)
+|++++++.+|++|+++.+|+|...++++|.++|++||+++|+|++|+.|....+..+..+.++|++++|+||+|+||+|
T Consensus 155 ~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~ 234 (417)
T 3n0l_A 155 KVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG 234 (417)
T ss_dssp HHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSC
T ss_pred HHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCe
Confidence 99999984489999988777899999999999999999999999999988876665555555689999999999999999
Q ss_pred eEEEEe-cchhhhhc
Q 023191 266 AMIFFR-KGVKEINK 279 (286)
Q Consensus 266 G~l~~~-~~~~~~~~ 279 (286)
|+++++ +++.+..+
T Consensus 235 G~~~~~~~~~~~~~~ 249 (417)
T 3n0l_A 235 GIIMTNDEELAKKIN 249 (417)
T ss_dssp EEEEESCHHHHHHHH
T ss_pred eEEEECCHHHHHHHh
Confidence 999998 46655443
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=237.55 Aligned_cols=247 Identities=47% Similarity=0.782 Sum_probs=183.6
Q ss_pred hcccc--ccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 22 QLNAP--LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 22 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
+|+.. ++..+++++..+.++..+..+.+.+.++++++++.+++++.+.+.+.+..++++.+++.+....+.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (420)
T 3gbx_A 4 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAID 83 (420)
T ss_dssp BCTTTCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHH
T ss_pred HHhhhcchhhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHH
Confidence 45555 6788999999998887777788999999999999999999999866666677777777776666788888889
Q ss_pred HHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCC
Q 023191 100 RALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST 179 (286)
Q Consensus 100 ~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 179 (286)
++++++|+++ ..|++++|+.++.+++.++++|||+|++.++.|+++..++.. ....|..++.++++.+ ++
T Consensus 84 ~la~~~~~~~----~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~-~~ 153 (420)
T 3gbx_A 84 RAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSP-----VNFSGKLYNIVPYGID-ES 153 (420)
T ss_dssp HHHHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC-----------------CHHHHSEEEEEEEC-TT
T ss_pred HHHHHhCCCC----ceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchh-----hhhcccceeEEeccCC-cc
Confidence 9999999976 357788886688878899999999999999888876543332 1233444555665566 66
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCC
Q 023191 180 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKS 259 (286)
Q Consensus 180 ~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~ 259 (286)
+.+|+++|+++++++++++|+++.+|+|...++++|.++|++||+++|+|++|+.|....+.....+..+|++++|+||+
T Consensus 154 ~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~ 233 (420)
T 3gbx_A 154 GKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKT 233 (420)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGG
T ss_pred CCcCHHHHHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccC
Confidence 88999999999987679999998777788889999999999999999999999888776555444445689999999999
Q ss_pred CCCCCceEEEEec---chhhhh
Q 023191 260 LRGPRGAMIFFRK---GVKEIN 278 (286)
Q Consensus 260 l~gp~gG~l~~~~---~~~~~~ 278 (286)
|+||+||++++++ ++.+..
T Consensus 234 ~~g~~gg~~~~~~~~~~~~~~~ 255 (420)
T 3gbx_A 234 LAGPRGGLILAKGGDEELYKKL 255 (420)
T ss_dssp GCSCSCEEEEESSCCHHHHHHH
T ss_pred CCCCCceEEEEcCCcHHHHHHh
Confidence 9999999999998 554433
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=236.16 Aligned_cols=250 Identities=42% Similarity=0.663 Sum_probs=181.0
Q ss_pred hhhccccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 20 PKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
+.++++.+..++++++..+.++..+..+.++|.++++++++.+++++.+.+.+.|..++++.++|.+....+.+++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 85 (425)
T 3ecd_A 6 NPFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIE 85 (425)
T ss_dssp SHHHHCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHH
T ss_pred chHHHHHHHhhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHH
Confidence 34678889999999999998877777788999999999999999999999876676677776666665555566777778
Q ss_pred HHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCC
Q 023191 100 RALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST 179 (286)
Q Consensus 100 ~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 179 (286)
++++++|.+. ..|++++|+.++..++.+++++||+|+++++.|.++...+. .....|..++.++++.++++
T Consensus 86 ~~~~~~~~~~----~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~ 156 (425)
T 3ecd_A 86 RVKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGA-----KPALSGKWFNALQYGVSRDT 156 (425)
T ss_dssp HHHHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECC-----------------------CEEEEECCCTTT
T ss_pred HHHHHhCCCC----ceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecch-----hhhhcccceeeeecCCCccc
Confidence 8999999876 23545666558887899999999999999988877432221 11234444555666666566
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCC
Q 023191 180 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKS 259 (286)
Q Consensus 180 ~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~ 259 (286)
+.+|+++|++++++.++++|+++++++|...++++|.++|++||+++|+|++|+.|....+.....+..+|++++|+||+
T Consensus 157 ~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~ 236 (425)
T 3ecd_A 157 MLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKT 236 (425)
T ss_dssp SSCCHHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGG
T ss_pred CccCHHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcc
Confidence 89999999999975589999998667798899999999999999999999999988776554444344589999999999
Q ss_pred CCCCCceEEEEec-chhhhh
Q 023191 260 LRGPRGAMIFFRK-GVKEIN 278 (286)
Q Consensus 260 l~gp~gG~l~~~~-~~~~~~ 278 (286)
|+||+||++++++ .+.+..
T Consensus 237 l~g~~~g~~~~~~~~~~~~~ 256 (425)
T 3ecd_A 237 LRGPRGGFVLTNDEEIAKKI 256 (425)
T ss_dssp GCCCSCEEEEESCHHHHHHH
T ss_pred cCCCCcEEEEeCCHHHHHHH
Confidence 9999999999985 454433
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=226.83 Aligned_cols=245 Identities=47% Similarity=0.798 Sum_probs=187.9
Q ss_pred cccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHC
Q 023191 26 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAF 105 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (286)
++.++++.++..+..+..++.+.+.+..++++.++.+++++.+.+.+.+..+|++.+++.+.....++++.+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~ 82 (405)
T 2vi8_A 3 YLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF 82 (405)
T ss_dssp SHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh
Confidence 45678889999988877666666777778888899999999998865454456655555555667788888999999999
Q ss_pred CCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHH
Q 023191 106 RLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 185 (286)
Q Consensus 106 g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e 185 (286)
|++. ..|++++|+.++.+++.+++++||+|+++++.|+++..... .+...|...+.++++++++++.+|++
T Consensus 83 g~~~----~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~ 153 (405)
T 2vi8_A 83 GAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-----PVNFSGVQYNFVAYGVDPETHVIDYD 153 (405)
T ss_dssp TCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-----TTSHHHHHSEEEEECBCTTTCSBCHH
T ss_pred CCCc----eEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-----hhhhccceeEEEecccccccCCcCHH
Confidence 9875 24667888558888999999999999999987776643221 11233332344554554456789999
Q ss_pred HHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc
Q 023191 186 QLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG 265 (286)
Q Consensus 186 ~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g 265 (286)
++++.+++.+|++|+++++|+|...++++|.++|++||+++|+|++|+.|....+.....+..+|++++|+||+|+||.|
T Consensus 154 ~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g 233 (405)
T 2vi8_A 154 DVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG 233 (405)
T ss_dssp HHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC
T ss_pred HHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC
Confidence 99999986589999887788887778999999999999999999999977665554443333589999999999998888
Q ss_pred eEEEEecchhhhhc
Q 023191 266 AMIFFRKGVKEINK 279 (286)
Q Consensus 266 G~l~~~~~~~~~~~ 279 (286)
|++++++++.+..+
T Consensus 234 G~~~~~~~~~~~l~ 247 (405)
T 2vi8_A 234 GMILCQEQFAKQID 247 (405)
T ss_dssp EEEEECHHHHHHHH
T ss_pred eEEEEcHHHHHHHH
Confidence 99999977765544
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=224.35 Aligned_cols=242 Identities=48% Similarity=0.775 Sum_probs=186.4
Q ss_pred ccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC
Q 023191 29 VVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD 108 (286)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~ 108 (286)
..++.+++.+.++..+..+.++|..++++.++.+++++.+.+.+.+..+|++..++.+......+++.+++++++++|++
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~ 85 (407)
T 2dkj_A 6 KRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA 85 (407)
T ss_dssp CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC
Confidence 45688899998887777789999999999999999999998865343355554434344444466766778999999987
Q ss_pred CCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHH
Q 023191 109 PEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLE 188 (286)
Q Consensus 109 ~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~ 188 (286)
+ .+|++++|+.++.+++.+++++||+|+++++.|+++..+.. .+...|..++.++++++++++.+|+++++
T Consensus 86 ~----~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~l~ 156 (407)
T 2dkj_A 86 W----ANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGS-----RVNFSGKLYKVVSYGVRPDTELIDLEEVR 156 (407)
T ss_dssp E----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC-----TTSHHHHHSEEEEECCCTTTSSCCHHHHH
T ss_pred c----ceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHH-----HHHhcCceEEEEecCCCcccCccCHHHHH
Confidence 5 34778888888887889999999999999987776642222 23344544455665555446889999999
Q ss_pred HHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEE
Q 023191 189 KSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 268 (286)
Q Consensus 189 ~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l 268 (286)
+.+++.++++|+++.+++|...++++|.++|++||+++|+|++|+.|....+.....+..+|++++|+||+++|+++|++
T Consensus 157 ~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~ 236 (407)
T 2dkj_A 157 RLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLI 236 (407)
T ss_dssp HHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEEE
T ss_pred HHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCceEE
Confidence 99985589999997666688889999999999999999999999987765554333333589999999999999999999
Q ss_pred EEe-cchhhhhc
Q 023191 269 FFR-KGVKEINK 279 (286)
Q Consensus 269 ~~~-~~~~~~~~ 279 (286)
+++ +++.+..+
T Consensus 237 ~~~~~~~~~~l~ 248 (407)
T 2dkj_A 237 LSNDPELGKRID 248 (407)
T ss_dssp EESCHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 999 57665443
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=192.10 Aligned_cols=203 Identities=14% Similarity=0.073 Sum_probs=155.1
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
+.+.++..++++.+++++.+.+...+ .....++.+.+++++++++|++.+. .+|++++|++ ++.
T Consensus 4 ~~~~~gp~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~~~~~la~~~~~~~~~--~~v~~~~g~t~al~- 68 (384)
T 3zrp_A 4 LLLHVGPTTIKEDVLVAGLENNVGFT------------SKEFVEALAYSLKGLRYVMGASKNY--QPLIIPGGGTSAME- 68 (384)
T ss_dssp --CCSSCSCCCHHHHHHTTCCSCCTT------------SHHHHHHHHHHHHHHHHHHTCCTTS--EEEEEESCHHHHHH-
T ss_pred eeccCCCCCCCHHHHHHhhccccccc------------cHHHHHHHHHHHHHHHHHhCCCCCC--cEEEEcCCcHHHHH-
Confidence 45677777899999999988764311 1233566667889999999997632 2599999999 888
Q ss_pred HHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 128 ~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
++.+++++||+|+++++.|.+. + +...+...|.+++.++ .+ .++.+|++++++.++++++++|+++ ++|
T Consensus 69 ~~~~~~~~gd~vi~~~~~~~~~--~----~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~np 139 (384)
T 3zrp_A 69 SVTSLLKPNDKILVVSNGVFGD--R----WEQIFKRYPVNVKVLR--PS-PGDYVKPGEVEEEVRKSEYKLVALTHVETS 139 (384)
T ss_dssp HGGGGCCTTCEEEEECSSHHHH--H----HHHHHTTSSCEEEEEC--CS-TTCCCCHHHHHHHHHHSCEEEEEEESEETT
T ss_pred HHHhhcCCCCEEEEecCCcchH--H----HHHHHHHcCCcEEEec--CC-CCCCCCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 8899999999999998655442 1 1112234565565555 44 4578999999999987679999997 555
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
+|...|+++|.++|++||+++|+|++|+.+....+..... +|++++|+||+|+|+.| |++++++++.+..
T Consensus 140 tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~---~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~ 210 (384)
T 3zrp_A 140 TGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWN---VDVYLTASQKALGSAAGLGLLLLSPKALSIL 210 (384)
T ss_dssp TTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTT---CSEEEEETTSTTCCCSSEEEEEECHHHHHHH
T ss_pred CceECcHHHHHHHHHhcCCEEEEECcccccCccccccccC---CCEEEecCcccccCCCceEEEEECHHHHHHh
Confidence 7788899999999999999999999998877654444333 89999999999988888 9999998875544
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=192.76 Aligned_cols=206 Identities=17% Similarity=0.200 Sum_probs=157.5
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
.+.+.++...+++.+++++.+.+...+ ......+.+.+++++++++|.+.+. .|++++|++ ++.
T Consensus 14 ~~~~~pgp~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~~~~~la~~~~~~~~~---~v~~~~sgt~al~ 78 (411)
T 3nnk_A 14 RLLMGPGPINADPRVLRAMSSQLIGQY------------DPAMTHYMNEVMALYRGVFRTENRW---TMLVDGTSRAGIE 78 (411)
T ss_dssp CEEESSSCCCCCHHHHHHHTSCCCCTT------------CHHHHHHHHHHHHHHHHHHTCCCSE---EEEEESCHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhhccccccc------------cHHHHHHHHHHHHHHHHHhCCCCCc---EEEECCCcHHHHH
Confidence 356677777889999999987543211 1223456677889999999997642 377777766 888
Q ss_pred HHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC
Q 023191 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (286)
Q Consensus 127 ~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n 205 (286)
+++.+++++||+|+++++.|.+.. +...+...|.+++.++ .+ +++.+|+++|+++++++++++|+++ ++|
T Consensus 79 ~~~~~~~~~gd~Vl~~~~~~~~~~------~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 149 (411)
T 3nnk_A 79 AILVSAIRPGDKVLVPVFGRFGHL------LCEIARRCRAEVHTIE--VP-WGEVFTPDQVEDAVKRIRPRLLLTVQGDT 149 (411)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHH------HHHHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhcCCCCEEEEecCCchHHH------HHHHHHHcCCeEEEEe--cC-CCCCCCHHHHHHHHhhCCCeEEEEeCCCC
Confidence 799999999999999996554421 2223445566666665 44 5678999999999986689999998 555
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhcc
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQ 280 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~ 280 (286)
+|...|+++|.++|++||+++|+|++|+.+....+..... +|++++|+||+|+||.| |++++++++.+..++
T Consensus 150 ptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~---~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~ 223 (411)
T 3nnk_A 150 STTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWG---LDAVSAGMQKCLGGPSGTSPITLSARMEEAIRR 223 (411)
T ss_dssp TTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTT---CSEEECCSTTTTCCCSSEEEEEECHHHHHHHHT
T ss_pred CcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccC---CcEEEecCccccCCCCceEEEEECHHHHHHHhh
Confidence 7788899999999999999999999998877655544433 89999999999888888 999999987766554
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=191.82 Aligned_cols=204 Identities=13% Similarity=0.066 Sum_probs=156.2
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
+.+.++..++++.+++++.+.+.+.| + ....++++++++++++++|++++. +|++|+|++ ++..
T Consensus 36 ~l~~~~~~~~~~~v~~a~~~~~~~~~----------~--~~~~~~~~~~~~~la~~~g~~~~~---~v~~t~g~t~al~~ 100 (393)
T 1vjo_A 36 LLLGPGPSNAHPSVLQAMNVSPVGHL----------D--PAFLALMDEIQSLLRYVWQTENPL---TIAVSGTGTAAMEA 100 (393)
T ss_dssp EECSSSCCCCCHHHHHHHSSCCCCTT----------S--HHHHHHHHHHHHHHHHHHTCCCSC---EEEESSCHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHhccccccc----------C--HHHHHHHHHHHHHHHHHhCCCCCc---EEEEeCchHHHHHH
Confidence 44455556789999999988765422 1 224577888999999999997641 599999999 8888
Q ss_pred HHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 128 ~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
++.+++++||+|+++++.|.+. . +...+...|.+++.++ .+ +++.+|+++|++.+++.++++|+++ ++|
T Consensus 101 ~~~~~~~~gd~Vl~~~~~~~~~--~----~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~np 171 (393)
T 1vjo_A 101 TIANAVEPGDVVLIGVAGYFGN--R----LVDMAGRYGADVRTIS--KP-WGEVFSLEELRTALETHRPAILALVHAETS 171 (393)
T ss_dssp HHHHHCCTTCEEEEEESSHHHH--H----HHHHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEETT
T ss_pred HHHhccCCCCEEEEEcCChhHH--H----HHHHHHHcCCceEEEe--cC-CCCCCCHHHHHHHHhhCCceEEEEeccCCC
Confidence 9999999999999999665541 0 2223445666665565 44 4578999999999976578999987 555
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+|...|+++|.++|+++|+++|+|++|+.|..+.++... ++|++++|+||+|++|.+ |++++++++.+..+
T Consensus 172 tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~ 243 (393)
T 1vjo_A 172 TGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAW---GVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQ 243 (393)
T ss_dssp TTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEECCSSSTTCSCSSCEEEEECHHHHHHHH
T ss_pred cceeccHHHHHHHHHHcCCEEEEECCccccCcCCccccc---CccEEEEcCcccccCCCceEEEEECHHHHHHHh
Confidence 777889999999999999999999999977554333222 489999999999988888 99999988766553
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=191.20 Aligned_cols=206 Identities=13% Similarity=0.123 Sum_probs=156.7
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
..+++.++..++++.+++++.+.+...+ ........+++++++++++|++++. +|++|+|++ ++
T Consensus 19 ~~~~~~~g~~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~g~~~~~---~i~~~~g~t~a~ 83 (393)
T 2huf_A 19 NKLLMGPGPSNAPQRVLDAMSRPILGHL------------HPETLKIMDDIKEGVRYLFQTNNIA---TFCLSASGHGGM 83 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTSCCCCTT------------SHHHHHHHHHHHHHHHHHHTCCCSE---EEEESSCHHHHH
T ss_pred CeEEecCCCCCCCHHHHHHHHhhhccCC------------CHHHHHHHHHHHHHHHHHhCCCCCc---EEEEcCcHHHHH
Confidence 3467777777789999999988765421 1223455666779999999987642 599999998 88
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CC
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~ 204 (286)
.+++.+++++||+|+++++.|.++. . ...+...|..++.++ .+ +++.+|++++++.+++.++++|+++ ++
T Consensus 84 ~~~~~~~~~~gd~vl~~~~~~~~~~--~----~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 154 (393)
T 2huf_A 84 EATLCNLLEDGDVILIGHTGHWGDR--S----ADMATRYGADVRVVK--SK-VGQSLSLDEIRDALLIHKPSVLFLTQGD 154 (393)
T ss_dssp HHHHHHHCCTTCEEEEEESSHHHHH--H----HHHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHHHHhCCCCEEEEECCCcchHH--H----HHHHHHcCCeeEEEe--CC-CCCCCCHHHHHHHHhccCCcEEEEEccC
Confidence 8899999999999999997665531 1 011223465565565 44 4568999999999976579999997 55
Q ss_pred C-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 205 n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
| +|...|+++|.++|++||+++|+|++|+.|....++... ++|++++|+||+|+||.| |++++++++.+..+
T Consensus 155 nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~ 228 (393)
T 2huf_A 155 SSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRW---EIDAMYTGSQKVLGAPPGITPVSFSHRAVERYK 228 (393)
T ss_dssp TTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSSSTTCCCSSCEEEEECHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhc---CccEEEECCCcccccCCCeEEEEECHHHHHHHh
Confidence 5 778889999999999999999999999887655443322 389999999999998888 99999987766554
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=190.09 Aligned_cols=205 Identities=15% Similarity=0.156 Sum_probs=155.2
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
.+.|.++...+++.+++++.+.....+ .....++.+++++++++++|++.+. .+++++|++ ++.
T Consensus 12 ~~~~~p~p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~g~~~~~---~~~~~~s~t~al~ 76 (416)
T 3isl_A 12 RTIMTPGPVEVDPRVLRVMSTPVVGQF------------DPAFTGIMNETMEMLRELFQTKNRW---AYPIDGTSRAGIE 76 (416)
T ss_dssp CEECSSSSCCCCHHHHHHTTSCCCCTT------------SHHHHHHHHHHHHHHHHHTTCCCSE---EEEEESCHHHHHH
T ss_pred ceeecCCCcCcCHHHHHHhcccCCCCc------------cHHHHHHHHHHHHHHHHHhCCCCCc---EEEecCcHHHHHH
Confidence 456777777789999998876432211 1233566777889999999987642 243666665 887
Q ss_pred HHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC
Q 023191 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (286)
Q Consensus 127 ~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n 205 (286)
+++.++++|||+|+++++.|.++. +...+...|.+++.++ .+ .++.+|++++++++++.++++|+++ ++|
T Consensus 77 ~~~~~l~~~gd~Vl~~~~~~~~~~------~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 147 (416)
T 3isl_A 77 AVLASVIEPEDDVLIPIYGRFGYL------LTEIAERYGANVHMLE--CE-WGTVFDPEDIIREIKKVKPKIVAMVHGET 147 (416)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH------HHHHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhcCCCCEEEEecCCcccHH------HHHHHHhcCCeeEEEe--cC-CCCCCCHHHHHHHHhhCCCcEEEEEccCC
Confidence 788999999999999996655421 1223345566666665 44 4578999999999984489999997 566
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+|...|+++|.++|++||+++|+|++|+.|....+..... +|++++|+||+++||.| |++++++++.+..+
T Consensus 148 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~---~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~ 220 (416)
T 3isl_A 148 STGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWK---IDAAIGGTQKCLSVPSGMAPITYNERVADVIA 220 (416)
T ss_dssp TTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTT---CSEEECCSSSTTCCCSSEEEEEECHHHHHHHH
T ss_pred CCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcC---CCEEEecCccccCCCCCeEEEEECHHHHHHhh
Confidence 7788899999999999999999999999887665544433 89999999999888888 99999988765554
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=187.98 Aligned_cols=200 Identities=11% Similarity=0.041 Sum_probs=152.6
Q ss_pred cCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHH
Q 023191 52 IPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYT 130 (286)
Q Consensus 52 ~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~ 130 (286)
.++...+++.+++++.+.+.+.| + ....++++++++++++++|++ +. .++++++|++ ++..++.
T Consensus 25 ~~~~~~~~~~v~~a~~~~~~~~~----------~--~~~~~~~~~~~~~la~~~g~~-~~--~~v~~~~g~t~a~~~~~~ 89 (386)
T 2dr1_A 25 TAGPVACFPEVLEIMKVQMFSHR----------S--KEYRKVHMDTVERLREFLEVE-KG--EVLLVPSSGTGIMEASIR 89 (386)
T ss_dssp CSSSCCCCHHHHHHTTSCCCCTT----------S--HHHHHHHHHHHHHHHHHHTCS-SS--EEEEESSCHHHHHHHHHH
T ss_pred cCCCcCCcHHHHHHHhccccccc----------C--HHHHHHHHHHHHHHHHHhCCC-CC--cEEEEeCChHHHHHHHHH
Confidence 44555679999999988764322 1 123678888999999999997 11 3599999999 8888999
Q ss_pred HhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh-cCCcEEEEc-CCC-CC
Q 023191 131 ALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-FRPKLIVAG-ASA-YA 207 (286)
Q Consensus 131 a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-~~tk~v~i~-~~n-~g 207 (286)
+++++||+|+++++.|.+.. +...+...|.+++.++ .+ .++.+|+++|++.+.+ .++++|+++ ++| +|
T Consensus 90 ~l~~~gd~vl~~~~~~~~~~------~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG 160 (386)
T 2dr1_A 90 NGVSKGGKVLVTIIGAFGKR------YKEVVESNGRKAVVLE--YE-PGKAVKPEDLDDALRKNPDVEAVTITYNETSTG 160 (386)
T ss_dssp HHSCTTCEEEEEESSHHHHH------HHHHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHCTTCCEEEEESEETTTT
T ss_pred HhhcCCCeEEEEcCCchhHH------HHHHHHHhCCceEEEe--cC-CCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcc
Confidence 99999999999996665520 2223345566565555 44 4578999999999953 379999997 555 77
Q ss_pred CccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 208 RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 208 ~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
...|+++|.++|++||+++|+|++|+.|....+.... ++|++++|+||+|++|.| |++++++++.+..
T Consensus 161 ~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~ 229 (386)
T 2dr1_A 161 VLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKW---GLDVVFSSSQKAFGVPPGLAIGAFSERFLEIA 229 (386)
T ss_dssp EECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCSEEEEETTSTTCCCSSCEEEEECHHHHHHH
T ss_pred hhCCHHHHHHHHHHcCCeEEEEccccccCcccccccc---CCcEEEEeccccccCCCceEEEEECHHHHHHH
Confidence 8889999999999999999999999987654333222 489999999999999877 9999998876544
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=187.88 Aligned_cols=206 Identities=14% Similarity=0.131 Sum_probs=155.0
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
.+.+.++...+++.+++++.+.+...+ .....++..++++++++++|.+.+. +|++++|++ ++.
T Consensus 24 ~~~~~p~p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~~~---~v~~~~gg~~al~ 88 (393)
T 3kgw_A 24 RLLLGPGPSNLAPRVLAAGSLRMIGHM------------QKEMLQIMEEIKQGIQYVFQTRNPL---TLVVSGSGHCAME 88 (393)
T ss_dssp CEECSSSCCCCCHHHHHHTTCCCCCTT------------SHHHHHHHHHHHHHHHHHHTCCCSE---EEEESCCTTTHHH
T ss_pred ceeccCCCCCCCHHHHHHhcccccCcc------------cHHHHHHHHHHHHHHHHHhCCCCCc---EEEEeCCcHHHHH
Confidence 456777777889999999987543211 1223456667789999999986532 488888888 888
Q ss_pred HHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC
Q 023191 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (286)
Q Consensus 127 ~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n 205 (286)
.++.+++++||+|+++.+.|.+. .+...+...|..++.++ .+ .++.+|+++|++.++++++++|+++ ++|
T Consensus 89 ~~~~~~~~~gd~vl~~~~~~~~~------~~~~~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 159 (393)
T 3kgw_A 89 TALFNLLEPGDSFLTGTNGIWGM------RAAEIADRIGARVHQMI--KK-PGEHYTLQEVEEGLAQHKPVLLFLVHGES 159 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHH------HHHHHHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHhcCCCCCEEEEEeCCchhH------HHHHHHHHcCCceEEEe--CC-CCCCCCHHHHHHHHhhCCCcEEEEeccCC
Confidence 89999999999999987443211 01112345566666565 44 4568999999999987689999998 555
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhcc
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQ 280 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~ 280 (286)
+|...|+++|.++|++||+++|+|++|+.|....+..... +|++++|+||+|+|+.| |++++++++.+..++
T Consensus 160 ptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~---~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~ 233 (393)
T 3kgw_A 160 STGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQG---IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYS 233 (393)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTT---CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHT
T ss_pred cchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcC---CCEEEecCcccccCCCceeEEEECHHHHHHHhc
Confidence 6788899999999999999999999998776554443333 89999999999988888 999999887766543
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-24 Score=190.56 Aligned_cols=236 Identities=14% Similarity=0.088 Sum_probs=164.3
Q ss_pred ccccccccChHHHHHHHHHHHHH----HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHH
Q 023191 23 LNAPLEVVDPEIADIIEHEKARQ----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESL 96 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (286)
+++++..++++.+..+.....+. .+.++|..+++. +++.+.+++.+.+.... .+ |+...+..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~------y~~~~g~~~lr~~ 76 (385)
T 1b5p_A 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGK-TK------YAPPAGIPELREA 76 (385)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CS------CCCTTCCHHHHHH
T ss_pred hhhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-CC------CCCCCCCHHHHHH
Confidence 33444445554444444432221 357899888873 57889999888775422 12 3333566789999
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
+.+++.+.+|++.+. .+|++|+|++ ++.+++.++++|||+|+++++.|.++ ...+...|.+++.++ .
T Consensus 77 ia~~~~~~~g~~~~~--~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--------~~~~~~~g~~~~~v~--~ 144 (385)
T 1b5p_A 77 LAEKFRRENGLSVTP--EETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSY--------PEMVRFAGGVVVEVE--T 144 (385)
T ss_dssp HHHHHHHTTCCCCCG--GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHH--------HHHHHHTTCEEEEEE--C
T ss_pred HHHHHHHHhCCCCCh--HHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhH--------HHHHHHcCCEEEEee--c
Confidence 999999888864322 3599999999 88889999999999999999665544 334456676666665 4
Q ss_pred CC-CCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CCC
Q 023191 176 NE-STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFE 247 (286)
Q Consensus 176 ~~-~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~ 247 (286)
+. +++.+|++++++++++ ++++|+++ |+| +|...+ +++|+++|++||+++|+|++|+..... +.... .+.
T Consensus 145 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~ 222 (385)
T 1b5p_A 145 LPEEGFVPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE-GEHFSPGRVA 222 (385)
T ss_dssp CGGGTTCCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSS-SCCCCGGGTC
T ss_pred CcccCCCCCHHHHHHhcCC-CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccC-CCCCCHHHcC
Confidence 32 3578999999999987 88999886 767 776655 889999999999999999997654332 11110 011
Q ss_pred -cceEEEeCCCCCCCC--CCceEEEEecchhhhhc
Q 023191 248 -YADVVTTTTHKSLRG--PRGAMIFFRKGVKEINK 279 (286)
Q Consensus 248 -~~D~v~~s~~K~l~g--p~gG~l~~~~~~~~~~~ 279 (286)
..++++.|++|+++. .+.|++++++++.+..+
T Consensus 223 ~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~ 257 (385)
T 1b5p_A 223 PEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMA 257 (385)
T ss_dssp TTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHH
T ss_pred CCCEEEEEechhhcCCcccceEEEEeCHHHHHHHH
Confidence 357889999998853 34599999887765544
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=187.49 Aligned_cols=205 Identities=13% Similarity=0.124 Sum_probs=152.9
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
.++++++...+++.+++++.+.+...| ..........+++.+++++|.+++. +|++++|++ ++.
T Consensus 19 ~~~~~~~p~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~l~~~la~~~~~~~~~---~v~~~~g~t~al~ 83 (396)
T 2ch1_A 19 KIMMGPGPSNCSKRVLTAMTNTVLSNF------------HAELFRTMDEVKDGLRYIFQTENRA---TMCVSGSAHAGME 83 (396)
T ss_dssp CBCCSSSSCCCCHHHHHHTTSCCCCTT------------CHHHHHHHHHHHHHHHHHHTCCCSC---EEEESSCHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhccccccCC------------ChhHHHHHHHHHHHHHHHhCCCCCc---EEEECCcHHHHHH
Confidence 456666666689999999987654311 1122344556778899999987742 599999998 888
Q ss_pred HHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC
Q 023191 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (286)
Q Consensus 127 ~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n 205 (286)
+++.+++++||+|+++++.|.++. . ...+...|..++.++ .+ +++.+|++++++.+++.++++|+++ ++|
T Consensus 84 ~~~~~~~~~gd~vl~~~~~~~~~~--~----~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~n 154 (396)
T 2ch1_A 84 AMLSNLLEEGDRVLIAVNGIWAER--A----VEMSERYGADVRTIE--GP-PDRPFSLETLARAIELHQPKCLFLTHGDS 154 (396)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH--H----HHHHHHTTCEEEEEE--CC-TTSCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhcCCCCeEEEEcCCcccHH--H----HHHHHHcCCceEEec--CC-CCCCCCHHHHHHHHHhCCCCEEEEECCCC
Confidence 899999999999999996665541 0 012345566666665 44 4678999999999976579999997 555
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+|...|+++|.++|+++|+++|+|++|+.|....++... ++|++++|+||++++|.| |++++++++.+..+
T Consensus 155 ptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~ 227 (396)
T 2ch1_A 155 SSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKW---EIDAVYTGAQKVLGAPPGITPISISPKALDVIR 227 (396)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCCEEECCCC-CCCCCSSCEEEEECHHHHHHHH
T ss_pred CCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhc---CcCEEEEcCCccccCCCCeEEEEECHHHHHhhh
Confidence 778889999999999999999999999877554333222 379999999999998888 99999887665543
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=188.48 Aligned_cols=207 Identities=17% Similarity=0.099 Sum_probs=154.1
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
...+|+++..++|+++++++.+.+...+ .....++.+++++++++++|++.+. ..+++++|++ ++
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~~~~~la~~~g~~~~~--~~i~~~~ggt~al 84 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQVPYFR------------TTEFSSTMLENEKFMLEYAKAPEGS--KAVFMTCSSTGSM 84 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSCCCCCS------------SHHHHHHHHHHHHHHHHHHTCCTTC--EEEEESSCHHHHH
T ss_pred CceeecCCCCCCcHHHHHHhcCCCCCCC------------CHHHHHHHHHHHHHHHHHhCCCCCc--eEEEEcCChhHHH
Confidence 4678888888899999999987653311 1234466777889999999997542 1355588877 88
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CC
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~ 204 (286)
.+++.++++|||+|+++++.+.++.. ...+...|..+..++ .+ .++.+|++++++.+++ ++++|+++ ++
T Consensus 85 ~~~~~~~~~~gd~vi~~~~~~~~~~~------~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~~~~-~~~~v~~~~~~ 154 (376)
T 3f0h_A 85 EAVVMNCFTKKDKVLVIDGGSFGHRF------VQLCEIHEIPYVALK--LE-HGKKLTKEKLYEYDNQ-NFTGLLVNVDE 154 (376)
T ss_dssp HHHHHHHCCTTCCEEEEESSHHHHHH------HHHHHHTTCCEEEEE--CC-TTCCCCHHHHHTTTTS-CCCEEEEESEE
T ss_pred HHHHHhccCCCCeEEEEeCChhhHHH------HHHHHHcCCceEEEe--CC-CCCCCCHHHHHHhhcc-CceEEEEeccc
Confidence 87999999999999999853333210 012234455565565 33 4578999999998876 89999997 55
Q ss_pred C-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhcc
Q 023191 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQ 280 (286)
Q Consensus 205 n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~ 280 (286)
| +|...|+++|.++|++||+++|+|++|+.+....+.... ++|++++|+||+|+|+.| |++++++++.+..++
T Consensus 155 nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~ 229 (376)
T 3f0h_A 155 TSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNEC---GADVMITGSQKVLACPPGISVIVLAPRGVERVEK 229 (376)
T ss_dssp TTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHT
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccccccc---CccEEEecCcccccCCCceEEEEECHHHHHHhhc
Confidence 5 778889999999999999999999999877654322222 389999999999987878 999999887765543
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=190.97 Aligned_cols=216 Identities=17% Similarity=0.201 Sum_probs=157.9
Q ss_pred HHcCceecCCCC-CCCHHHHHHhccccc--cCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 45 QWKGLELIPSEN-FTSVSVMQAVGSVMT--NKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 45 ~~~~i~L~~~e~-~~~~~v~~a~~~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
..+.+.|+.+.+ ++++.+++++.+.+. +.+ +++....+.......+..+.+++++++++|++++ +|++++|
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~----~v~~~~g 93 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFGWQAEEAVDIARNQIADLVGADPR----EIVFTSG 93 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG----GEEEESS
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC----eEEEeCC
Confidence 346677765444 679999999999887 544 2222201111223456667788999999999764 4999999
Q ss_pred hH-HHHHHHHHhcC----CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCC
Q 023191 122 SP-SNFQVYTALLK----PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRP 196 (286)
Q Consensus 122 ~~-a~~~~l~a~~~----~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~t 196 (286)
++ ++.+++.++.+ +||+|+++++.|+++...... ....|.+++.++ .+ +++.+|+++|++++++ ++
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-----~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~~ 164 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-----LEREGFEVTYLA--PQ-RNGIIDLKELEAAMRD-DT 164 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHH-----HHHTTCEEEEEC--CC-TTSCCCHHHHHHHCCT-TE
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHH-----HHHcCCEEEEec--cC-CCCccCHHHHHHhcCC-Cc
Confidence 88 88878887773 899999999777766432211 123365555554 44 4688999999999987 89
Q ss_pred cEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 197 KLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 197 k~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
++|+++ ++| +|...|+++|.++|++||+++|+|++|+.+....+.... ++|++++|+||++ ||.| |+++++++
T Consensus 165 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~sK~~-g~~g~G~~~~~~~ 240 (423)
T 3lvm_A 165 ILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL---KVDLMSFSGHKIY-GPKGIGALYVRRK 240 (423)
T ss_dssp EEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTS---CCSEEEEESTTTT-SCSSCEEEEECBT
T ss_pred EEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhc---CCCEEEechHHhc-CCCCeEEEEEecc
Confidence 999987 555 778899999999999999999999999887665444333 3899999999955 5666 99999977
Q ss_pred hhhhhc
Q 023191 274 VKEINK 279 (286)
Q Consensus 274 ~~~~~~ 279 (286)
..+..+
T Consensus 241 ~~~~~~ 246 (423)
T 3lvm_A 241 PRVRIE 246 (423)
T ss_dssp TBCCCC
T ss_pred ccCCCC
Confidence 654443
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-24 Score=190.75 Aligned_cols=198 Identities=17% Similarity=0.203 Sum_probs=150.3
Q ss_pred CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc-
Q 023191 56 NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL- 133 (286)
Q Consensus 56 ~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~- 133 (286)
.++++.+++++.+.+.+.+ +++.. .+.......++.+++++++++++|++++ +|++++|++ ++.+++.++.
T Consensus 10 ~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~----~i~~~~g~~~a~~~~~~~~~~ 82 (382)
T 4hvk_A 10 KPVDERILEAMLPYMTESF--GNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG----TVVFTSGATEANNLAIIGYAM 82 (382)
T ss_dssp CCCCHHHHHHHHHHHHTSC--CCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTE----EEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhc--CCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcC----eEEEECCchHHHHHHHHHhhh
Confidence 3678999999999886644 33332 1222234456777888999999999763 599999999 8887888887
Q ss_pred ---CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCC
Q 023191 134 ---KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YAR 208 (286)
Q Consensus 134 ---~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~ 208 (286)
+|||+|+++++.|+++...... ....|.+++.++ .+ +++.+|+++|++++++ ++++|+++ ++| +|.
T Consensus 83 ~~~~~gd~vi~~~~~~~~~~~~~~~-----~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 153 (382)
T 4hvk_A 83 RNARKGKHILVSAVEHMSVINPAKF-----LQKQGFEVEYIP--VG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEIGT 153 (382)
T ss_dssp HHGGGCCEEEEETTCCHHHHHHHHH-----HHHTTCEEEEEC--BC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCB
T ss_pred hhcCCCCEEEECCCCcHHHHHHHHH-----HHhcCCEEEEec--cC-CCCCcCHHHHHHHhcc-CceEEEEECCCCCcee
Confidence 9999999999888776543221 112355555554 44 5678999999999987 89999987 666 778
Q ss_pred ccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 209 LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 209 ~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
..|+++|.++|++||+ +|+|++|+.|....+.... ++|++++|+||++ ||.| |+++++++.
T Consensus 154 ~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~-g~~g~g~~~~~~~~ 215 (382)
T 4hvk_A 154 IQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKI---GADMLTISSNDIY-GPKGVGALWIRKEA 215 (382)
T ss_dssp BCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHH---TCSEEEEESGGGT-SCTTCEEEEEETTC
T ss_pred eCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhc---CCCEEEEeHHHhc-CCCceEEEEEcCcc
Confidence 8999999999999999 9999999887654333222 3899999999965 6777 999998764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-23 Score=186.46 Aligned_cols=203 Identities=14% Similarity=0.094 Sum_probs=150.1
Q ss_pred ceec-CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 49 LELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 49 i~L~-~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
+-|. ++..++++.+++++.+.+.+.+ + .......+.+++++++++|++++ +|++|+|++ ++.
T Consensus 10 ~yl~~~~~~~~~~~v~~a~~~~~~~~~----------~--~~~~~~~~~l~~~la~~~g~~~~----~v~~t~g~t~a~~ 73 (392)
T 2z9v_A 10 VITLTAGPVNAYPEVLRGLGRTVLYDY----------D--PAFQLLYEKVVDKAQKAMRLSNK----PVILHGEPVLGLE 73 (392)
T ss_dssp SEECSSSCCCCCHHHHHHTTSCCCCTT----------S--HHHHHHHHHHHHHHHHHTTCSSC----CEEESSCTHHHHH
T ss_pred ceeecCCCcCCCHHHHHHHhccccccc----------c--HHHHHHHHHHHHHHHHHhCCCCC----EEEEeCCchHHHH
Confidence 3343 3444679999999988765411 0 12234455677999999998754 499999988 888
Q ss_pred HHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh-cCCcEEEEc-CC
Q 023191 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-FRPKLIVAG-AS 204 (286)
Q Consensus 127 ~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-~~tk~v~i~-~~ 204 (286)
+++.+++++||+|+++++.|.++. .. ..+...|.+++.++ .+ +++.+|++++++.+++ .++++|+++ ++
T Consensus 74 ~~~~~~~~~gd~Vl~~~~~~~~~~--~~----~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 144 (392)
T 2z9v_A 74 AAAASLISPDDVVLNLASGVYGKG--FG----YWAKRYSPHLLEIE--VP-YNEAIDPQAVADMLKAHPEITVVSVCHHD 144 (392)
T ss_dssp HHHHHHCCTTCCEEEEESSHHHHH--HH----HHHHHHCSCEEEEE--CC-TTSCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred HHHHHhcCCCCEEEEecCCcccHH--HH----HHHHHcCCceEEee--CC-CCCCCCHHHHHHHHhcCCCCcEEEEeccC
Confidence 889999999999999997766541 11 11223465565565 44 3467999999999953 278999887 55
Q ss_pred C-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 205 n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
| +|...|+++|.++|++||+++|+|++|+.|....++... ++|++++|+||+++||.| |++++++++.+..+
T Consensus 145 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~ 218 (392)
T 2z9v_A 145 TPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDC---KADIYVTGPNKCLGAPPGLTMMGVSERAWAKMK 218 (392)
T ss_dssp GGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGG---TCSEEEECSSSTTCCCSCCEEEEECHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccc---cceEEEecCcccccCCCceeEEEECHHHHHHhh
Confidence 5 678889999999999999999999999877654333222 389999999999999888 99999988765443
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=187.89 Aligned_cols=235 Identities=12% Similarity=0.054 Sum_probs=166.1
Q ss_pred cccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHH
Q 023191 26 PLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (286)
+...+++..+..+.+...+..+.++|..+++. +++.+.+++.+.+.... .+ |+...+..++++++.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~------y~~~~g~~~l~~~la~~~~~ 78 (389)
T 1gd9_A 6 RLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGL-TH------YGPNIGLLELREAIAEKLKK 78 (389)
T ss_dssp HHHHSCCCHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHTTC-CS------CCCTTCCHHHHHHHHHHHHH
T ss_pred HhHhCChhHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhCCC-CC------CCCCCCcHHHHHHHHHHHHH
Confidence 34445555555555543332467899888774 58899999988775421 12 33334567899899999988
Q ss_pred HCCCCCCCccee-EEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCC
Q 023191 104 AFRLDPEKWGVN-VQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY 181 (286)
Q Consensus 104 ~~g~~~~~~~~~-v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 181 (286)
.+|++.+. .+ |++|+|++ ++.+++.+++++||+|+++++.|.++.. .+...|.+++.++++.+ +++.
T Consensus 79 ~~g~~~~~--~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~v~~~~~-~~~~ 147 (389)
T 1gd9_A 79 QNGIEADP--KTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP--------AVILAGGKPVEVPTYEE-DEFR 147 (389)
T ss_dssp HHCCCCCT--TTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH--------HHHHHTCEEEEEECCGG-GTTC
T ss_pred HhCCCCCC--CCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHCCCEEEEeccCCc-cCCC
Confidence 88853221 36 89999888 8887888999999999999977766532 34456666666654311 2568
Q ss_pred CCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccC----CCCCC-CCcceE
Q 023191 182 IDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAG----VIPSP-FEYADV 251 (286)
Q Consensus 182 ~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~----~~~~~-~~~~D~ 251 (286)
+|++++++.+++ ++++|+++ ++| +|... ++++|+++|++||+++|+|++|+.+..... +.... ..+.|+
T Consensus 148 ~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i 226 (389)
T 1gd9_A 148 LNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTI 226 (389)
T ss_dssp CCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEE
T ss_pred CCHHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEE
Confidence 999999999987 88998887 666 67665 488999999999999999999886654321 11110 124789
Q ss_pred EEeCCCCCCCCC--CceEEEEecchhhhhc
Q 023191 252 VTTTTHKSLRGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 252 v~~s~~K~l~gp--~gG~l~~~~~~~~~~~ 279 (286)
++.|+||+|+.| +.|++++++++.+..+
T Consensus 227 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~ 256 (389)
T 1gd9_A 227 TVNGFSKTFAMTGWRLGFVAAPSWIIERMV 256 (389)
T ss_dssp EEEESTTTTTCGGGCCEEEECCHHHHHHHH
T ss_pred EEecChhhcCCcccceEEEEECHHHHHHHH
Confidence 999999988533 3499999987765544
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=188.89 Aligned_cols=214 Identities=14% Similarity=0.093 Sum_probs=155.9
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..+++. +++.+++++.+.+.... .+ |+...+..++++++.+++.+.+|++.+. .+|++++|++
T Consensus 42 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~------y~~~~g~~~lr~~la~~~~~~~g~~~~~--~~v~~~~g~t~ 112 (389)
T 1o4s_A 42 DVINLTAGEPDFPTPEPVVEEAVRFLQKGE-VK------YTDPRGIYELREGIAKRIGERYKKDISP--DQVVVTNGAKQ 112 (389)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHTTCC-CC------CCCTTCCHHHHHHHHHHHHHHHTCCCCG--GGEEEESHHHH
T ss_pred CEEEccCCCCCCCCCHHHHHHHHHHHhcCC-CC------CCCCCCCHHHHHHHHHHHHHHhCCCCCH--HHEEEecCHHH
Confidence 67899888773 57899999988775421 12 3333566789999999998888873221 3599999998
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.+++++||+|+++++.|.++.. .+...|.+++.++++.+ +++.+|+++|++++++ ++++|+++
T Consensus 113 al~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~ 182 (389)
T 1o4s_A 113 ALFNAFMALLDPGDEVIVFSPVWVSYIP--------QIILAGGTVNVVETFMS-KNFQPSLEEVEGLLVG-KTKAVLINS 182 (389)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECCGG-GTTCCCHHHHHHTCCT-TEEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEEecCCc-cCCCCCHHHHHHhccc-CceEEEEcC
Confidence 8888899999999999999976665532 34456666665654321 3578999999999987 88998887
Q ss_pred CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCC-CCC---CcceEEEeCCCCCCCCC--CceEEEEec
Q 023191 203 ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPF---EYADVVTTTTHKSLRGP--RGAMIFFRK 272 (286)
Q Consensus 203 ~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~~---~~~D~v~~s~~K~l~gp--~gG~l~~~~ 272 (286)
++| +|...+ +++|+++|++||+++|+|++|+.+........ ..+ .+.|++++|+||+|+.| +.|++++++
T Consensus 183 p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~ 262 (389)
T 1o4s_A 183 PNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSE 262 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCH
Confidence 666 676666 89999999999999999999886544211000 001 24799999999998533 359999988
Q ss_pred chhhhhc
Q 023191 273 GVKEINK 279 (286)
Q Consensus 273 ~~~~~~~ 279 (286)
++.+..+
T Consensus 263 ~~~~~l~ 269 (389)
T 1o4s_A 263 KVATAVS 269 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765543
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=188.70 Aligned_cols=214 Identities=15% Similarity=0.142 Sum_probs=155.3
Q ss_pred CceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC-CCCCcceeEEeCCChH-H
Q 023191 48 GLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~v~~~sG~~-a 124 (286)
.+.|..+.+ ++|+.+++++.+.+.+.+ +.+....+............+++.+++++|. +++ +|++++|++ +
T Consensus 24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~----~v~~~~g~t~a 97 (406)
T 1kmj_A 24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKMENVRKRASLFINARSAE----ELVFVRGTTEG 97 (406)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGG----GEEEESSHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCC----eEEEeCChhHH
Confidence 577876665 578999999998886532 1111100000011234445577899999998 443 599999998 8
Q ss_pred HHHHHHHh----cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 125 NFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 125 ~~~~l~a~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
+.+++.++ +++||+|+++++.|.+...+... .+...|.+++.++ .+ +++.+|++++++++++ ++++|+
T Consensus 98 ~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~----~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~l~~-~~~~v~ 169 (406)
T 1kmj_A 98 INLVANSWGNSNVRAGDNIIISQMEHHANIVPWQM----LCARVGAELRVIP--LN-PDGTLQLETLPTLFDE-KTRLLA 169 (406)
T ss_dssp HHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHH----HHHHHTCEEEEEC--BC-TTSCBCGGGHHHHCCT-TEEEEE
T ss_pred HHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHH----HHHhCCCEEEEEe--cC-CCCCcCHHHHHHHhcc-CCeEEE
Confidence 88899999 89999999999888776533211 1234465555555 44 4578999999999987 899999
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
++ ++| +|...|+++|.++|++||+++|+|++|+.|....+.... ++|++++|+||++ ||.| |++++++++.+.
T Consensus 170 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~---~~d~~~~s~~K~~-g~~G~G~~~~~~~~~~~ 245 (406)
T 1kmj_A 170 ITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---DCDFYVFSGHKLY-GPTGIGILYVKEALLQE 245 (406)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEEGGGTT-SCTTCEEEEECHHHHHH
T ss_pred EeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCccccc---CCCEEEEEchhcc-CCCCcEEEEEeHHHHhh
Confidence 87 555 778899999999999999999999999877543221111 4899999999988 7777 999999887665
Q ss_pred hc
Q 023191 278 NK 279 (286)
Q Consensus 278 ~~ 279 (286)
.+
T Consensus 246 ~~ 247 (406)
T 1kmj_A 246 MP 247 (406)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=184.82 Aligned_cols=215 Identities=15% Similarity=0.075 Sum_probs=155.6
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|..+++. +++.+.+++.+.+.+.. .+ |+...+..++++++.+++.+.+|++.+. .+|++|+|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~------y~~~~g~~~l~~~la~~~~~~~g~~~~~--~~v~~~~g~~ 100 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQGK-TR------YGPAAGEPRLREAIAQKLQRDNGLCYGA--DNILVTNGGK 100 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CS------CCCTTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEESHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHhcCC-CC------CCCCCCCHHHHHHHHHHHHHhcCCCCCh--hhEEEcCCHH
Confidence 357899888773 57899999988775421 12 3444567889999999999888864322 3599999988
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.+++++||+|+++++.|.++.. .+...|.+++.++.+.+ +++.+|+++|++.+++ ++++|+++
T Consensus 101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~-~~~~v~~~ 170 (388)
T 1j32_A 101 QSIFNLMLAMIEPGDEVIIPAPFWVSYPE--------MVKLAEGTPVILPTTVE-TQFKVSPEQIRQAITP-KTKLLVFN 170 (388)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTCEEEEECCCGG-GTTCCCHHHHHHHCCT-TEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHH--------HHHHcCCEEEEecCCcc-cCCCCCHHHHHHhcCc-CceEEEEe
Confidence 8888999999999999999977665432 34456665655553321 2578999999999987 89999887
Q ss_pred -CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCC--CC----CcceEEEeCCCCCCC--CCCceEEE
Q 023191 203 -ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PF----EYADVVTTTTHKSLR--GPRGAMIF 269 (286)
Q Consensus 203 -~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~----~~~D~v~~s~~K~l~--gp~gG~l~ 269 (286)
++| +|... ++++|+++|++||+++|+|++|+........... .+ .+.|+++.|+||+++ |.+.|+++
T Consensus 171 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~ 250 (388)
T 1j32_A 171 TPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLA 250 (388)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEE
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEE
Confidence 666 67654 4899999999999999999998764432111111 11 137899999999984 33459999
Q ss_pred Eecchhhhhc
Q 023191 270 FRKGVKEINK 279 (286)
Q Consensus 270 ~~~~~~~~~~ 279 (286)
+++++.+..+
T Consensus 251 ~~~~~~~~l~ 260 (388)
T 1j32_A 251 GPVPLVKAAT 260 (388)
T ss_dssp CCHHHHHHHH
T ss_pred eCHHHHHHHH
Confidence 9887765443
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=187.67 Aligned_cols=209 Identities=15% Similarity=0.102 Sum_probs=147.6
Q ss_pred cCceecCC--CCCCCHHHHHHhccccccCCCCCCC--CCcccCCcchHHHHHHHHHHH-HHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPS--ENFTSVSVMQAVGSVMTNKYSEGYP--GARYYGGNEYIDMAESLCQKR-ALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~--e~~~~~~v~~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.+.|+.+ .+++++.+++++.+.+.......+. ....+.......+ ++++ +++++|.+ . |++++|
T Consensus 8 ~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~la~~~~~~--~----v~~~~g 77 (371)
T 2e7j_A 8 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHD----FIHNQLPKFLGCD--V----ARVTNG 77 (371)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHH----HHHTHHHHHTTSS--E----EEEESS
T ss_pred CcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHH----HHHHHHHHHcCCC--E----EEEeCC
Confidence 45666553 4467999999999887653211111 1111222334444 4478 88888876 2 999999
Q ss_pred hH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh----cCC
Q 023191 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL----FRP 196 (286)
Q Consensus 122 ~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~----~~t 196 (286)
++ ++.+++.+++++||+|+++++.|.++.. .+...|.+++.++.+.+ +++.+|++++++.+++ .++
T Consensus 78 ~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~~~ 148 (371)
T 2e7j_A 78 AREAKFAVMHSLAKKDAWVVMDENCHYSSYV--------AAERAGLNIALVPKTDY-PDYAITPENFAQTIEETKKRGEV 148 (371)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHHTTCEEEEECCCCT-TTCCCCHHHHHHHHHHHTTTSCE
T ss_pred hHHHHHHHHHHHhCCCCEEEEccCcchHHHH--------HHHHcCCeEEEeecccC-CCCCcCHHHHHHHHHhhcccCCe
Confidence 87 8888999999999999999977766543 23456666655652244 4588999999999983 278
Q ss_pred cEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 197 KLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 197 k~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
++|+++ ++| +|...|+++|.++|++||+++|+|++|+.+..+...... ++|++++|+||+|++|.+ |+++++++
T Consensus 149 ~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~sK~~~~~~~~G~~~~~~~ 225 (371)
T 2e7j_A 149 VLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGMKEE 225 (371)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred EEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhc---CCCEEEecCCcCCCCCCCcEEEEEech
Confidence 998887 555 778889999999999999999999999887653222111 379999999999988766 99999998
Q ss_pred hhhh
Q 023191 274 VKEI 277 (286)
Q Consensus 274 ~~~~ 277 (286)
+.+.
T Consensus 226 ~~~~ 229 (371)
T 2e7j_A 226 WAEI 229 (371)
T ss_dssp TTTT
T ss_pred hhhh
Confidence 7665
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=184.57 Aligned_cols=196 Identities=13% Similarity=0.081 Sum_probs=147.8
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
++++++..++++.+++++.+.+...+ + .........+++++++++|++++ ++++++|++ ++.+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~~~---------~---~~~~~~~~~l~~~la~~~g~~~~----~i~~~~g~t~a~~~ 66 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLHHR---------T---EAAREVFLKARGLLREAFRTEGE----VLILTGSGTLAMEA 66 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCCTT---------S---HHHHHHHHHHHHHHHHHHTCSSE----EEEEESCHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCCcc---------C---HHHHHHHHHHHHHHHHHhCCCCc----eEEEcCchHHHHHH
Confidence 56778888899999999988764311 0 12234445677889999998753 599999988 8888
Q ss_pred HHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 128 ~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
++.+++++||+|+++++.|.++. .. ..+...|.+++.++ .+ +++.+|++++++ + ++++|+++ ++|
T Consensus 67 ~~~~~~~~gd~vl~~~~~~~~~~--~~----~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~---~-~~~~v~~~~~~np 133 (352)
T 1iug_A 67 LVKNLFAPGERVLVPVYGKFSER--FY----EIALEAGLVVERLD--YP-YGDTPRPEDVAK---E-GYAGLLLVHSETS 133 (352)
T ss_dssp HHHHHCCTTCEEEEEECSHHHHH--HH----HHHHHTTCEEEEEE--CC-TTCCCCTTTSCC---S-SCSEEEEESEETT
T ss_pred HHHhccCCCCeEEEEeCCchhHH--HH----HHHHHcCCceEEEe--CC-CCCCCCHHHHhc---c-CCcEEEEEEecCC
Confidence 99999999999999997666652 10 01223465565565 44 456789888877 4 89999987 555
Q ss_pred CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhh
Q 023191 206 YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (286)
+|...|+++|.++|++| |+++|+|++|+.|....+.... ++|++++|+|||++||.| |++++++++.+
T Consensus 134 tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~ 204 (352)
T 1iug_A 134 TGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM---GVDAAASGSQKGLMCPPGLGFVALSPRALE 204 (352)
T ss_dssp TTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG---TCSEEEEESSSTTCCCSCEEEEEECHHHHH
T ss_pred cceecCHHHHHHHHHhhCCCCEEEEECCccccCcceecccc---CeeEEEecCcccccCCCceeEEEECHHHHH
Confidence 67889999999999999 9999999999877654332222 389999999999999988 99999887553
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-23 Score=184.45 Aligned_cols=205 Identities=17% Similarity=0.250 Sum_probs=148.3
Q ss_pred eecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 50 ELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 50 ~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
.|+.+.+ ++++.+++++.+.+.+.|.+ +...+ ............+++++++++|++++ +|++++|++ ++.+
T Consensus 4 yld~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 4 YFDNNATTRVDDRVLEEMIVFYREKYGN--PNSAH-GMGIEANLHMEKAREKVAKVLGVSPS----EIFFTSCATESINW 76 (384)
T ss_dssp ECBTTTCCCCCHHHHHHHHHHHHTCCCC--TTCSS-HHHHHHHHHHHHHHHHHHHHHTSCGG----GEEEESCHHHHHHH
T ss_pred EEecCccCCCCHHHHHHHHHHHHhcCCC--Ccccc-HHHHHHHHHHHHHHHHHHHHcCCCCC----eEEEECCHHHHHHH
Confidence 4444444 67999999999988764422 21100 00011234445567888888998764 499999988 8887
Q ss_pred HHHHhc----CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 128 VYTALL----KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 128 ~l~a~~----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.++. ++||+|+++++.|+++..... .+...|.+++.++ .+ +++.+|+++|++.+++ ++++|+++
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~~~~v~~~~ 147 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMK-----YLSMKGFKVKYVP--VD-SRGVVKLEELEKLVDE-DTFLVSIMA 147 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-----HHHHTTCEEEECC--BC-TTSCBCHHHHHHHCCT-TEEEEEEES
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHH-----HHHhcCCEEEEEc--cC-CCCccCHHHHHHHhCC-CCeEEEEEC
Confidence 888887 899999999977766533221 1123455555454 44 4578999999999987 89999987
Q ss_pred CCC-CCCccCHHHHHHHHHhcC--CEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 203 ASA-YARLYDYERIRKVCNKQK--AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~~--~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
++| +|...|+++|.++|++|| +++|+|++|+.|....++... ++|++++|+||++ ||.| |++++++++
T Consensus 148 ~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~sK~~-g~~G~G~~~~~~~~ 219 (384)
T 1eg5_A 148 ANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKL---EVDYASFSAHKFH-GPKGVGITYIRKGV 219 (384)
T ss_dssp BCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTT---CCSEEEEEGGGGT-SCTTCEEEEECTTS
T ss_pred CCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhc---CCCEEEecHHHhc-CCCceEEEEEcCCC
Confidence 555 678899999999999999 999999999876544333222 4899999999974 6777 999999876
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-23 Score=181.24 Aligned_cols=203 Identities=14% Similarity=0.077 Sum_probs=150.7
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
++|+++..++|+.+++++.+.+.+.+ + ....+..+++++++++++|++.+. .+|++|+|++ ++..
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~~~---------~---~~~~~~~~~l~~~la~~~g~~~~~--~~v~~t~g~t~a~~~ 67 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRGHL---------D---PEVLRVNRAIQERLAALFDPGEGA--LVAALAGSGSLGMEA 67 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCCTT---------C---HHHHHHHHHHHHHHHHHHCCCTTC--EEEEESSCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhccccccc---------C---HHHHHHHHHHHHHHHHHhCCCCCC--ceEEEcCCcHHHHHH
Confidence 56788888899999999988765310 1 123355566789999999986222 3699999988 8887
Q ss_pred HHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 128 ~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
++.++++ |+|+++++.|.++ +. ...+...|.+++.++ .+ +++.+|++++++.+++.++++|+++ ++|
T Consensus 68 ~~~~~~~--d~vl~~~~~~~~~--~~----~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~np 136 (353)
T 2yrr_A 68 GLANLDR--GPVLVLVNGAFSQ--RV----AEMAALHGLDPEVLD--FP-PGEPVDPEAVARALKRRRYRMVALVHGETS 136 (353)
T ss_dssp HHHTCSC--CCEEEEECSHHHH--HH----HHHHHHTTCCEEEEE--CC-TTSCCCHHHHHHHHHHSCCSEEEEESEETT
T ss_pred HHHHhcC--CcEEEEcCCCchH--HH----HHHHHHcCCceEEEe--CC-CCCCCCHHHHHHHHHhCCCCEEEEEccCCC
Confidence 8888876 8999998766654 11 112234565566665 44 4578999999999976578999887 555
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+|...|+++|.++|++||+++|+|++|+.|....++... ++|++++|+|||++||.| |++++++++.+..+
T Consensus 137 tG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~ 208 (353)
T 2yrr_A 137 TGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAM---GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFT 208 (353)
T ss_dssp TTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCSEEECCTTSTTCCCSSCEEEEECHHHHHHCC
T ss_pred cceecCHHHHHHHHHHcCCeEEEEcCccccccccccccc---CceEEEecCcccccCCCceEEEEECHHHHHHhc
Confidence 678889999999999999999999999766443221111 379999999999988888 99999988765443
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=182.41 Aligned_cols=211 Identities=11% Similarity=0.032 Sum_probs=150.2
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.|+|..++++ +++.+++++.+.+.+.. .+ |+...+..++++++.+++.+.+|++.+. .+|++|+|++
T Consensus 31 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~------y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~v~~t~g~~ 101 (391)
T 3h14_A 31 RRIIHMEVGQPGTGAPRGAVEALAKSLETDA-LG------YTVALGLPALRQRIARLYGEWYGVDLDP--GRVVITPGSS 101 (391)
T ss_dssp CCCEECCCSSCSSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCG--GGEEEESSHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CC------CCCCCChHHHHHHHHHHHHHHhCCCCCH--HHEEEecChH
Confidence 477999988874 47889999988776521 12 3334556789999999999888864322 3699999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.+++++||+|+++.+.|.++. ..+...|.+++.++++.+ .++.+|++++++. ++++|+++
T Consensus 102 ~al~~~~~~l~~~gd~vl~~~p~~~~~~--------~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~----~~~~v~i~ 168 (391)
T 3h14_A 102 GGFLLAFTALFDSGDRVGIGAPGYPSYR--------QILRALGLVPVDLPTAPE-NRLQPVPADFAGL----DLAGLMVA 168 (391)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHH--------HHHHHTTCEEEEEECCGG-GTTSCCHHHHTTS----CCSEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCccHH--------HHHHHcCCEEEEeecCcc-cCCCCCHHHHHhc----CCeEEEEC
Confidence 888899999999999999996555443 344566766666664322 3468899999876 68999887
Q ss_pred -CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC--CCcceEEEeCCCCCCC--CCCceEEEEecc
Q 023191 203 -ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP--FEYADVVTTTTHKSLR--GPRGAMIFFRKG 273 (286)
Q Consensus 203 -~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~--~~~~D~v~~s~~K~l~--gp~gG~l~~~~~ 273 (286)
++| +|...+ +++|+++|++||+++|+|++|+....... .... +...++++.|++|+++ |.+.|+++++++
T Consensus 169 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 247 (391)
T 3h14_A 169 SPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTALELTDECYVINSFSKYFSMTGWRVGWMVVPED 247 (391)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGG
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcChhhcCCCEEEEEechhccCCccceeEEEEeCHH
Confidence 666 676666 88999999999999999999864332211 1111 1235688999999884 444599999988
Q ss_pred hhhhhc
Q 023191 274 VKEINK 279 (286)
Q Consensus 274 ~~~~~~ 279 (286)
+.+..+
T Consensus 248 ~~~~~~ 253 (391)
T 3h14_A 248 QVRVVE 253 (391)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 776654
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=180.64 Aligned_cols=205 Identities=13% Similarity=0.100 Sum_probs=146.6
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
.+++++|...+++++++++.+.+.+. ++. + ......+ +++++++++|.+.+. .++++++|++ ++.
T Consensus 5 ~~~~~~gp~~~~~~v~~a~~~~~~~~----~~~---~-~~~~~~~----l~~~la~~~g~~~~~--~~v~~~~g~t~a~~ 70 (366)
T 1m32_A 5 YLLLTPGPLTTSRTVKEAMLFDSCTW----DDD---Y-NIGVVEQ----IRQQLTALATASEGY--TSVLLQGSGSYAVE 70 (366)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCCCTT----SHH---H-HTTTHHH----HHHHHHHHHCSSSSE--EEEEEESCHHHHHH
T ss_pred cccccCCCcCCCHHHHHHHhhhhcCC----CHH---H-HHHHHHH----HHHHHHHHhCCCCcC--cEEEEecChHHHHH
Confidence 57888886678999999998754210 000 0 0023334 557777888832111 2599999988 888
Q ss_pred HHHHHhcCCCCeEEecc-CCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-CCcEEEEc-C
Q 023191 127 QVYTALLKPHDRIMALD-LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-RPKLIVAG-A 203 (286)
Q Consensus 127 ~~l~a~~~~Gd~Vl~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-~tk~v~i~-~ 203 (286)
+++.+++++||+|++++ +.|++. +...+...|.+++.++ .+ +++.+|++++++++++. ++++|+++ +
T Consensus 71 ~~~~~~~~~gd~vi~~~~~~~~~~-------~~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~ 140 (366)
T 1m32_A 71 AVLGSALGPQDKVLIVSNGAYGAR-------MVEMAGLMGIAHHAYD--CG-EVARPDVQAIDAILNADPTISHIAMVHS 140 (366)
T ss_dssp HHHHHSCCTTCCEEEEESSHHHHH-------HHHHHHHHTCCEEEEE--CC-TTSCCCHHHHHHHHHHCTTCCEEEEESE
T ss_pred HHHHHhcCCCCeEEEEeCCCccHH-------HHHHHHHhCCceEEEe--CC-CCCCCCHHHHHHHHhcCCCeEEEEEecc
Confidence 89999999999998776 333321 1112334565566565 34 45779999999999873 57888776 5
Q ss_pred CC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 204 SA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 204 ~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+| +|...|+++|.++|++||+++|+|++|+.|....++... ++|++++|+||+++||.| |++++++++.+..+
T Consensus 141 ~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~ 215 (366)
T 1m32_A 141 ETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAAL---HIDYLISSANKCIQGVPGFAFVIAREQKLAACK 215 (366)
T ss_dssp ETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCT
T ss_pred cCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCcccccc---CccEEEecCcccccCCCceEEEEECHHHHHhhc
Confidence 55 688889999999999999999999999877654443222 389999999999988888 99999988765544
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=183.10 Aligned_cols=214 Identities=13% Similarity=0.098 Sum_probs=154.9
Q ss_pred HcCceecCCCC--CCCHHHHHHhccccccCCCCCCCC-CcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 46 WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPG-ARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 46 ~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
.+.|+|..+.+ ++++.+++++.+.+.+.. +. ...|+...+..++++++.+++.+.+|.+.+. .+|++|+|+
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~--~~i~~~~g~ 108 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYD----SVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNA--DNLYMTMGA 108 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSC----HHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEESSH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCC----ccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCCh--HHEEEccCH
Confidence 36789988866 368899999988775421 00 1123344566789999999999998863322 369999999
Q ss_pred H-HHHHHHHHhcCCC-CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 123 P-SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 123 ~-a~~~~l~a~~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
+ ++..++.+++++| |+|+++++.|.++. ..+...|.+++.+| .+.+++.+|++++++++++ ++++|+
T Consensus 109 ~~al~~~~~~l~~~g~d~vl~~~p~~~~~~--------~~~~~~g~~~~~v~--~~~~~~~~d~~~l~~~l~~-~~~~v~ 177 (398)
T 3ele_A 109 AASLSICFRALTSDAYDEFITIAPYFPEYK--------VFVNAAGARLVEVP--ADTEHFQIDFDALEERINA-HTRGVI 177 (398)
T ss_dssp HHHHHHHHHHHCCSTTCEEEEESSCCTHHH--------HHHHHTTCEEEEEC--CCTTTSSCCHHHHHHTCCT-TEEEEE
T ss_pred HHHHHHHHHHHcCCCCCEEEEeCCCchhhH--------HHHHHcCCEEEEEe--cCCcCCcCCHHHHHHHhCc-CCCEEE
Confidence 9 8888999999999 99999996655543 24455676665555 4545679999999999987 899999
Q ss_pred Ec-CCC-CCCccC---HHHHHHHHHh------cCCEEEEeccccccccccCCCCCC--CCcceEEEeCCCCCCC--CCCc
Q 023191 201 AG-ASA-YARLYD---YERIRKVCNK------QKAIMLADMAHISGLVAAGVIPSP--FEYADVVTTTTHKSLR--GPRG 265 (286)
Q Consensus 201 i~-~~n-~g~~~~---l~~I~~ia~~------~~~~vivD~a~~~g~~~~~~~~~~--~~~~D~v~~s~~K~l~--gp~g 265 (286)
++ ++| +|...+ +++|+++|++ ||+++|+|++|+.........+.. ....++++.|++|+|+ |.+.
T Consensus 178 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 257 (398)
T 3ele_A 178 INSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERI 257 (398)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCC
T ss_pred EcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCcccee
Confidence 97 666 677666 6777899999 999999999987533321111111 1136688999999884 4445
Q ss_pred eEEEEecchhh
Q 023191 266 AMIFFRKGVKE 276 (286)
Q Consensus 266 G~l~~~~~~~~ 276 (286)
|++++++++.+
T Consensus 258 G~~~~~~~~~~ 268 (398)
T 3ele_A 258 GYVLVPDEVYD 268 (398)
T ss_dssp EEEECCTTSTT
T ss_pred EEEEEcchhhh
Confidence 99999987543
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-23 Score=186.75 Aligned_cols=237 Identities=10% Similarity=0.051 Sum_probs=168.6
Q ss_pred cccccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (286)
++++..+++..+..+.+.. ...+.++|..+++. +++.+++++.+.+.+. ..+ |+...+..++++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~------y~~~~g~~~l~~~la~~~ 75 (411)
T 2o0r_A 4 VSRLRPYATTVFAEMSALA-TRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-VNQ------YPPGPGSAPLRRAIAAQR 75 (411)
T ss_dssp CGGGGGGSSCHHHHHHHHH-HTTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-CCS------CCCTTCCHHHHHHHHHHH
T ss_pred hhHhHhcCccHHHHHHHHh-hcCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-CCC------CCCCCCCHHHHHHHHHHH
Confidence 4556667777777766543 34467899888763 5789999998887542 112 233345678999999999
Q ss_pred HHHCCCCCCCcce-eEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCC
Q 023191 102 LEAFRLDPEKWGV-NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST 179 (286)
Q Consensus 102 ~~~~g~~~~~~~~-~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 179 (286)
.+.+|++.+. . +|++|+|++ ++.+++.+++++||+|+++++.|.++.. .+...|.+++.++++.+..+
T Consensus 76 ~~~~g~~~~~--~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~--------~~~~~g~~~~~v~~~~~~~~ 145 (411)
T 2o0r_A 76 RRHFGVDYDP--ETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP--------VVAMAGAHRVTVPLVPDGRG 145 (411)
T ss_dssp HHHHCCCCCT--TTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEEETTE
T ss_pred HHHcCCCCCC--CceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH--------HHHHcCCEEEEeeccccccC
Confidence 8888864221 2 499999988 8888899999999999999977766532 33456666665654321114
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CC---Ccc
Q 023191 180 GYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PF---EYA 249 (286)
Q Consensus 180 ~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~---~~~ 249 (286)
+.+|+++|++.+++ ++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+.+......... .+ .+.
T Consensus 146 ~~~d~~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 224 (411)
T 2o0r_A 146 FALDADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAER 224 (411)
T ss_dssp EECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred CCCCHHHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCC
Confidence 67999999999987 89999987 666 676655 589999999999999999998765432111110 11 247
Q ss_pred eEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 250 DVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 250 D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
|+++.|+||+|+ |.+.|++++++++.+..+
T Consensus 225 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~ 256 (411)
T 2o0r_A 225 TITISSAAKMFNCTGWKIGWACGPAELIAGVR 256 (411)
T ss_dssp EEEEEEHHHHTTCTTTCEEEEECCHHHHHHHH
T ss_pred EEEEeechhhcCCccceEEEEeeCHHHHHHHH
Confidence 999999999885 334699999887766544
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-23 Score=186.45 Aligned_cols=198 Identities=17% Similarity=0.200 Sum_probs=146.0
Q ss_pred CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc-
Q 023191 56 NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL- 133 (286)
Q Consensus 56 ~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~- 133 (286)
.++++.+++++.+.+.+.+ +++.. .|..........+++++++++++|++++ +|++|+|++ ++.+++.++.
T Consensus 10 ~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~a~~~~~~~l~~ 82 (382)
T 4eb5_A 10 KPVDERILEAMLPYMTESF--GNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG----TVVFTSGATEANNLAIIGYAM 82 (382)
T ss_dssp CCCCHHHHHHHHHHHHTSC--CCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTE----EEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcc--CCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCC----eEEEcCchHHHHHHHHHHHHh
Confidence 3679999999998886533 22221 1221223345666788999999998763 599999988 8887888887
Q ss_pred ---CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCC
Q 023191 134 ---KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YAR 208 (286)
Q Consensus 134 ---~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~ 208 (286)
++||+|+++++.|+++...... ....|..++.++ .+ +++.+|+++|++.+++ ++++|+++ ++| +|.
T Consensus 83 ~~~~~gd~Vl~~~~~~~~~~~~~~~-----~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 153 (382)
T 4eb5_A 83 RNARKGKHILVSAVEHMSVINPAKF-----LQKQGFEVEYIP--VG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEIGT 153 (382)
T ss_dssp HHGGGCCEEEEETTCCHHHHHHHHH-----HTTTTCEEEEEC--BC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCB
T ss_pred hccCCCCEEEECCCcchHHHHHHHH-----HHhCCcEEEEec--cC-CCCccCHHHHHHHhcC-CCeEEEEeccCCCccc
Confidence 8999999999887766432211 112455555555 44 4678999999999987 89998887 555 778
Q ss_pred ccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 209 LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 209 ~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
..|+++|.++|++||++ |+|++|+.|....++... ++|++++|+||+ .||.| |+++++++.
T Consensus 154 ~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~---~~di~~~s~sK~-~g~~g~G~~~~~~~~ 215 (382)
T 4eb5_A 154 IQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKI---GADMLTISSNDI-YGPKGVGALWIRKEA 215 (382)
T ss_dssp BCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHH---TCSEEEEETGGG-TCCSSCEEEEEETTC
T ss_pred cCCHHHHHHHHHHCCCE-EEEcchhcCCcccCcccc---CCCEEEeehHHh-cCCCceEEEEEcccc
Confidence 89999999999999999 999999876543222111 389999999997 57777 999998763
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-23 Score=186.89 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=169.0
Q ss_pred CCCCCcchhhhhcccCCCchhhccccccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCC
Q 023191 1 MSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGY 78 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~ 78 (286)
|+++.|..- ++. -.+++++...++.++..+.+.. ...+.|+|..+++. +++.+++++.+.+....
T Consensus 1 ~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~---- 67 (429)
T 1yiz_A 1 MSSTSNETM-HNK-------FDLPKRYQGSTKSVWVEYIQLA-AQYKPLNLGQGFPDYHAPKYALNALAAAANSPD---- 67 (429)
T ss_dssp ------------C-------CCSSSSCCCCTTCHHHHHHHHH-HHHCCEECCSSSCSSCCCHHHHHHHHHHHTCSC----
T ss_pred CCCCccchh-ccc-------cchhHHhhhCCchHHHHHHHHh-ccCCEEEecCCCCCCCCCHHHHHHHHHHHhccc----
Confidence 666666544 221 1134566667777777666543 34578999888763 68999999988775410
Q ss_pred CCCcccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCcccc
Q 023191 79 PGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQ 155 (286)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~ 155 (286)
.....|+...+..++++++.+++.+.+|. +++. +|++++|++ ++.+++.+++++||+|+++.+.|.++.
T Consensus 68 ~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~----- 139 (429)
T 1yiz_A 68 PLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMT---EVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYE----- 139 (429)
T ss_dssp GGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTT---SEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH-----
T ss_pred cCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcC---CEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHH-----
Confidence 01112344455678999999999888885 4430 499999988 888899999999999999996665543
Q ss_pred ccccccccceeeeEEEecccCCC---------CCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHh
Q 023191 156 TDTKKISAVSIFFETMPYRLNES---------TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNK 221 (286)
Q Consensus 156 ~~~~~~~~~g~~~~~v~~~~~~~---------~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~ 221 (286)
..+...|..++.+++ +.+ ++.+|+++|++.+++ ++++|+++ ++| +|...+ +++|+++|++
T Consensus 140 ---~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~ 213 (429)
T 1yiz_A 140 ---PMVKAAGGIPRFIPL--KPNKTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKK 213 (429)
T ss_dssp ---HHHHHTTCEEEEEEC--BCCCSSSSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred ---HHHHHcCCEEEEEeC--CcccccccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHH
Confidence 234456666655654 322 467999999999976 89999887 666 676664 8999999999
Q ss_pred cCCEEEEeccccccccccC----CCCCC-CCcceEEEeCCCCCCCCC--CceEEEEecchhhhhc
Q 023191 222 QKAIMLADMAHISGLVAAG----VIPSP-FEYADVVTTTTHKSLRGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 222 ~~~~vivD~a~~~g~~~~~----~~~~~-~~~~D~v~~s~~K~l~gp--~gG~l~~~~~~~~~~~ 279 (286)
||+++|+|++|+....... +.... ..+.|+++.|+||+|+.| +.|++++++++.+..+
T Consensus 214 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~ 278 (429)
T 1yiz_A 214 WNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQ 278 (429)
T ss_dssp HTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHHHHHHHH
T ss_pred cCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHHHHHHHH
Confidence 9999999999875332111 11111 124789999999988533 3599999988766554
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=181.82 Aligned_cols=205 Identities=13% Similarity=0.038 Sum_probs=151.7
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..+++. +++.+++++.+.+.... .+ |+...+..++++++.+++.+.+|++.+. .+|++|+|++
T Consensus 30 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~------y~~~~~~~~l~~~la~~~~~~~g~~~~~--~~v~~~~g~~~ 100 (370)
T 2z61_A 30 KVIHLEIGEPDFNTPKPIVDEGIKSLKEGK-TH------YTDSRGILELREKISELYKDKYKADIIP--DNIIITGGSSL 100 (370)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHHHTTC-CS------CCCTTCCHHHHHHHHHHHHHHSSCCCCG--GGEEEESSHHH
T ss_pred CEEEccCCCCCCCCCHHHHHHHHHHHHcCc-cC------CCCCCCCHHHHHHHHHHHHHHhCCCCCh--hhEEECCChHH
Confidence 57899888773 57899999988775421 12 3333556789999999998888854332 3599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.+++.+++++||+|+++++.|.++.. .+...|..++.++ +|++++++.+++ ++++|+++
T Consensus 101 a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~v~---------~d~~~l~~~l~~-~~~~v~~~~ 162 (370)
T 2z61_A 101 GLFFALSSIIDDGDEVLIQNPCYPCYKN--------FIRFLGAKPVFCD---------FTVESLEEALSD-KTKAIIINS 162 (370)
T ss_dssp HHHHHHHHHCCTTCEEEEESSCCTHHHH--------HHHHTTCEEEEEC---------SSHHHHHHHCCS-SEEEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHcCCEEEEeC---------CCHHHHHHhccc-CceEEEEcC
Confidence 8888999999999999999977665532 3445565444443 689999999987 88998887
Q ss_pred CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccC---CCCC-CCCcceEEEeCCCCCCCCC--CceEEEEecchh
Q 023191 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG---VIPS-PFEYADVVTTTTHKSLRGP--RGAMIFFRKGVK 275 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~---~~~~-~~~~~D~v~~s~~K~l~gp--~gG~l~~~~~~~ 275 (286)
++| +|...+.+ |.++|++||+++|+|++|+.+..... .... ...+.|+++.|+||+++.| +.|++++++++.
T Consensus 163 p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~ 241 (370)
T 2z61_A 163 PSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEII 241 (370)
T ss_dssp SCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHH
T ss_pred CCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHH
Confidence 666 77888999 99999999999999999886544211 1111 0124789999999998533 359999998876
Q ss_pred hhhc
Q 023191 276 EINK 279 (286)
Q Consensus 276 ~~~~ 279 (286)
+..+
T Consensus 242 ~~~~ 245 (370)
T 2z61_A 242 EAIL 245 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=180.61 Aligned_cols=203 Identities=10% Similarity=0.045 Sum_probs=144.7
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC----CCCCcceeEEeCCCh
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL----DPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~----~~~~~~~~v~~~sG~ 122 (286)
+.+.+.++...+++.+++++.+.+...+ + .........++++++++++. ++ .+|++++|+
T Consensus 5 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~---~---------~~~~~~~~~~~~~l~~~~~~~~~~~~----~~v~~~~g~ 68 (385)
T 2bkw_A 5 VDTLLIPGPIILSGAVQKALDVPSLGHT---S---------PEFVSIFQRVLKNTRAVFKSAAASKS----QPFVLAGSG 68 (385)
T ss_dssp CCEECSSSSCCCCHHHHHTTSCCCCCTT---S---------HHHHHHHHHHHHHHHHHTTCCGGGTC----EEEEEESCT
T ss_pred cceeecCCCcCchHHHHHHHhccccccC---C---------HHHHHHHHHHHHHHHHHhCCCCCCCC----ceEEEcCch
Confidence 4577888887889999999987654311 1 11112233345566666654 33 358888888
Q ss_pred H-HHHHHHHHhc---CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 123 P-SNFQVYTALL---KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 123 ~-a~~~~l~a~~---~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
+ ++.+++.++. ++||+|++++..+.... ....+...|.+++.+++. + +++.+|+++|++++++.++++
T Consensus 69 t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~------~~~~~~~~g~~~~~v~~~-~-~~~~~d~~~l~~~l~~~~~~~ 140 (385)
T 2bkw_A 69 TLGWDIFASNFILSKAPNKNVLVVSTGTFSDR------FADCLRSYGAQVDVVRPL-K-IGESVPLELITEKLSQNSYGA 140 (385)
T ss_dssp THHHHHHHHHHSCTTCSCCEEEEECSSHHHHH------HHHHHHHTTCEEEEECCS-S-TTSCCCHHHHHHHHHHSCCSE
T ss_pred HHHHHHHHHHHhccCCCCCeEEEEcCCcchHH------HHHHHHHcCCceEEEecC-C-CCCCCCHHHHHHHHhcCCCCE
Confidence 8 8887888887 99999988853211110 011234456656555531 4 567899999999997657999
Q ss_pred EEEc-CCC-CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 199 IVAG-ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 199 v~i~-~~n-~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
|+++ ++| +|...|+++|.++|++| |+++|+|++|+.|....++... ++|++++|+||+++||.| |+++++++
T Consensus 141 v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~G~G~~~~~~~ 217 (385)
T 2bkw_A 141 VTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW---GVDFALTASQKAIGAPAGLSISLCSSR 217 (385)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSCEEEEEECHH
T ss_pred EEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccccccc---CceEEEecCccccccCCcceEEEEcHH
Confidence 9987 555 67888999999999999 9999999999877654433322 389999999999999888 99999887
Q ss_pred hhh
Q 023191 274 VKE 276 (286)
Q Consensus 274 ~~~ 276 (286)
+.+
T Consensus 218 ~~~ 220 (385)
T 2bkw_A 218 FMD 220 (385)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=186.30 Aligned_cols=216 Identities=15% Similarity=0.125 Sum_probs=155.9
Q ss_pred cCceecCCCC-CCCHHHHHHhccccccCCCCCCCCC-cccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.+.|+.+.. ++|+.+++++.+.+..... ..+.. ..|. ........+++.+++++|++++ +|++++|++
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~y~---~~~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~ 87 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQE-NGPFSIAANQ---HIQQLIAQLRQALAETFNVDPN----TITITDNVTT 87 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHH-HCSSSHHHHH---HHHHHHHHHHHHHHHHTTSCGG----GEEEESSHHH
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHhc-cCCcchhhHH---HHHHHHHHHHHHHHHHcCCCHH----HEEEeCChHH
Confidence 3567765554 4678899999887754210 00000 0111 1113445577888999998764 499999988
Q ss_pred HHHHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 a~~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.++ +++||+|+++++.|.++..+... .+...|.+++.++++.. +++.+|++++++.+++ ++++|+++
T Consensus 88 a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~----~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~i~~-~~~~v~~~ 161 (390)
T 1elu_A 88 GCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQA----IAARFGITYRFFPVAAT-LNQGDAAAVLANHLGP-KTRLVILS 161 (390)
T ss_dssp HHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHH----HHHHHCCEEEEECCGGG-SSSSCHHHHHHTTCCT-TEEEEEEE
T ss_pred HHHHHHhCCCCCCCCEEEEecCcccHHHHHHHH----HHHHhCcEEEEEcCCCC-CCccchHHHHHHhcCC-CceEEEEe
Confidence 888889999 89999999999777765432110 12234655655654321 3578999999999987 89999987
Q ss_pred -CCC-CCCccCHHHHHHHHH----hcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchh
Q 023191 203 -ASA-YARLYDYERIRKVCN----KQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~----~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (286)
++| +|...|+++|.++|+ +||+++|+|++|+.|....++... +.|++++|+|||+.||.| |++++++++.
T Consensus 162 ~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~~ 238 (390)
T 1elu_A 162 HLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRL---EVDYYAFTGHKWFAGPAGVGGLYIHGDCL 238 (390)
T ss_dssp SBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTS---CCSEEEEESSSTTCCCTTCEEEEECTTTG
T ss_pred ccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhc---CCCEEEccccccccCCCceEEEEECHHhH
Confidence 556 778899999999999 999999999999987665443322 389999999998888888 9999999877
Q ss_pred hhhc
Q 023191 276 EINK 279 (286)
Q Consensus 276 ~~~~ 279 (286)
+..+
T Consensus 239 ~~~~ 242 (390)
T 1elu_A 239 GEIN 242 (390)
T ss_dssp GGCC
T ss_pred hhcC
Confidence 6554
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=184.34 Aligned_cols=237 Identities=15% Similarity=0.152 Sum_probs=155.6
Q ss_pred ccccccccChHHHHHHHHHHHH----HHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHH
Q 023191 23 LNAPLEVVDPEIADIIEHEKAR----QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESL 96 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~----~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (286)
+++++..+.++.+..+.+...+ ..+.++|..+++. +++.+++++.+.+..... ..|+...+..+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~g~~~l~~~ 83 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDT------HGYSTSRGIPRLRRA 83 (412)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------------CTTCCHHHHHH
T ss_pred hhHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCC------CCCCCCCCcHHHHHH
Confidence 3444555555555554443321 1256899888774 589999999887754211 123334566789988
Q ss_pred HHHHHHHHCCC--CCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 97 CQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 97 ~~~~~~~~~g~--~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
+.+++.+.+|+ ++++ +|++|+|++ ++.+++.+++++||+|+++++.|.++.. .+...|.+++.++
T Consensus 84 ia~~~~~~~g~~~~~~~---~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~~~~~~- 151 (412)
T 2x5d_A 84 ISHWYRDRYDVQIDPES---EAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIY--------GAVIAGAQVRSVP- 151 (412)
T ss_dssp HHHHHHHHHCCCCCTTT---SEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH--------HHHHHTCEEEEEE-
T ss_pred HHHHHHHHhCCCCCCCc---CEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEee-
Confidence 88888888786 3312 499999999 8888999999999999999966655432 3445666565555
Q ss_pred ccCCC-CCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCC--CC
Q 023191 174 RLNES-TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SP 245 (286)
Q Consensus 174 ~~~~~-~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~--~~ 245 (286)
.+.+ ++.+|++++++.+++ ++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+.+........ ..
T Consensus 152 -~~~~~~~~~d~~~l~~~i~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~ 229 (412)
T 2x5d_A 152 -LVPGIDFFNELERAIRESIP-KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQ 229 (412)
T ss_dssp -CSTTSCHHHHHHHHHHTEES-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred -cCCccCCCCCHHHHHHhccc-CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhh
Confidence 4433 445899999999886 89999996 766 676655 68899999999999999999886543211100 11
Q ss_pred C---CcceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 246 F---EYADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 246 ~---~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
+ .+.|+++.|+||+|+ |.+.|++++++++.+..+
T Consensus 230 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~ 268 (412)
T 2x5d_A 230 VPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALA 268 (412)
T ss_dssp STTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHH
T ss_pred ccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHH
Confidence 1 147899999999985 445599999887766554
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=179.81 Aligned_cols=201 Identities=13% Similarity=0.083 Sum_probs=150.4
Q ss_pred ecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHH
Q 023191 51 LIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVY 129 (286)
Q Consensus 51 L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l 129 (286)
|.....++++.+.+++.+.+...+ +++ ....+..++++++++++++++|++++ +|++++|++ ++.+++
T Consensus 35 ~~~~~~~~~~~v~~a~~~~~~~~~--~~~-----~~~~~~~~~~~~l~~~la~~~~~~~~----~i~~~~ggt~a~~~~~ 103 (397)
T 3f9t_A 35 FGSMCSNVLPITRKIVDIFLETNL--GDP-----GLFKGTKLLEEKAVALLGSLLNNKDA----YGHIVSGGTEANLMAL 103 (397)
T ss_dssp CSCSCCCCCTHHHHHHHHHTTCCT--TSG-----GGBHHHHHHHHHHHHHHHHHTTCTTC----EEEEESCHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHHHHhhcC--CCc-----ccChhHHHHHHHHHHHHHHHhCCCCC----CEEEecCcHHHHHHHH
Confidence 444445678899999988876533 111 11235678888899999999999764 589999998 888788
Q ss_pred HHhcCC-------------CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCC
Q 023191 130 TALLKP-------------HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRP 196 (286)
Q Consensus 130 ~a~~~~-------------Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~t 196 (286)
.++..+ ||+|+++++.|.++.. .+...|.+++.++ .+ +++.+|++++++.+++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~ 172 (397)
T 3f9t_A 104 RCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEK--------GREMMDLEYIYAP--IK-EDYTIDEKFVKDAVEDYDV 172 (397)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHH--------HHHHHTCEEEEEC--BC-TTSSBCHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHH--------HHHHcCceeEEEe--eC-CCCcCCHHHHHHHHhhcCC
Confidence 888765 9999999977666433 4445676666665 44 4688999999999986578
Q ss_pred cEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCC---------CCCCC-cceEEEeCCCCCCCCCC
Q 023191 197 KLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI---------PSPFE-YADVVTTTTHKSLRGPR 264 (286)
Q Consensus 197 k~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~---------~~~~~-~~D~v~~s~~K~l~gp~ 264 (286)
++|+++ ++| +|...|+++|.++|++||+++|+|++|+.+..+.... +..+. ++|++++|+||++++|.
T Consensus 173 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~ 252 (397)
T 3f9t_A 173 DGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPI 252 (397)
T ss_dssp CEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCS
T ss_pred eEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCC
Confidence 888887 666 7788999999999999999999999988665432110 11111 48999999999997775
Q ss_pred c-eEEEEecc
Q 023191 265 G-AMIFFRKG 273 (286)
Q Consensus 265 g-G~l~~~~~ 273 (286)
+ |+++++++
T Consensus 253 ~~g~~~~~~~ 262 (397)
T 3f9t_A 253 PSGGILFKDI 262 (397)
T ss_dssp SCEEEEESSG
T ss_pred CceEEEEeCH
Confidence 5 88888765
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-23 Score=187.86 Aligned_cols=214 Identities=14% Similarity=0.077 Sum_probs=154.1
Q ss_pred CceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 48 GLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 48 ~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
.+.|+.+.+ ++++.+++++.+.+.+.+ +++.. .|..........+++++++++++|++++ +|++++|++ ++
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~al 99 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSG--ASTVG-AHPSARRSAAVLDAAREAVADLVNADPG----GVVLGADRAVLL 99 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCC--SSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGG----GEEEESCHHHHH
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcC--CCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCC----eEEEeCChHHHH
Confidence 466665554 578999999998876532 11211 1111112345556677999999998754 499999999 77
Q ss_pred HHHHHHh---cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 126 FQVYTAL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 126 ~~~l~a~---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
.+++.++ +++||+|+++++.|.++..+...+ ....|.+++.++ .+++++.+|+++|++.+++ +|++|+++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~----~~~~g~~v~~v~--~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 172 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRA----AHRYGAKVKWAE--VDIETGELPTWQWESLISK-STRLVAVN 172 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHH----HHHHBCEEEEEC--CCTTTCCCCGGGHHHHCCT-TEEEEEEE
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHH----HHhcCCeEEEEe--cCcccCCcCHHHHHHHhCC-CceEEEEe
Confidence 7677777 799999999998887765433211 011455555554 4434678999999999987 89999987
Q ss_pred -CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCce-EEEEecchhhhhc
Q 023191 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA-MIFFRKGVKEINK 279 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG-~l~~~~~~~~~~~ 279 (286)
++| +|...|+++|.++|+++|+++|+|++|+.|....+.... ++|++++|+||++ ||++| ++++++++.+..+
T Consensus 173 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~~K~~-g~~~G~~~~~~~~~~~~l~ 248 (406)
T 3cai_A 173 SASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRET---DADVVTVNAHAWG-GPPIGAMVFRDPSVMNSFG 248 (406)
T ss_dssp SBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHH---CCSEEEEEGGGGT-SCSCEEEEESCHHHHHTSC
T ss_pred CCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhc---CCCEEEeehhhhc-CCCcCeEEEEehHHHhhcC
Confidence 555 788899999999999999999999999877554332212 3899999999976 56677 9999987765544
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=181.31 Aligned_cols=235 Identities=10% Similarity=0.125 Sum_probs=167.9
Q ss_pred cccccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (286)
++++..+.+..+..+.+.. ...+.++|..+++. +++.+.+++.+.+.... .+ |+...+..++++++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~------y~~~~g~~~l~~~la~~l 80 (386)
T 1u08_A 9 QSKLPQLGTTIFTQMSALA-QQHQAINLSQGFPDFDGPRYLQERLAHHVAQGA-NQ------YAPMTGVQALREAIAQKT 80 (386)
T ss_dssp CCSCCCCCCCHHHHHHHHH-HHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CS------CCCTTCCHHHHHHHHHHH
T ss_pred chhhhcCCccHHHHHHHHH-hcCCeEEecCCCCCCCCCHHHHHHHHHHHHhhc-cC------CCCCCCCHHHHHHHHHHH
Confidence 4556667777777666543 33567899888763 67999999988775411 12 233345678999999999
Q ss_pred HHHCCCCCCCcce-eEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCC
Q 023191 102 LEAFRLDPEKWGV-NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST 179 (286)
Q Consensus 102 ~~~~g~~~~~~~~-~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 179 (286)
++.+|.+.+. . +|++|+|++ ++.+++.+++++||+|+++++.|.++.. .+...|.+++.++ .+.++
T Consensus 81 ~~~~g~~~~~--~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~v~--~~~~~ 148 (386)
T 1u08_A 81 ERLYGYQPDA--DSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP--------AIALSGGIVKRMA--LQPPH 148 (386)
T ss_dssp HHHHSCCCCT--TTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEE--CCTTT
T ss_pred HHHhCCCCCC--CCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH--------HHHHcCCEEEEee--cCccc
Confidence 8888853221 2 499999998 8887899999999999999977665432 3445666565555 44335
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CC---Ccc
Q 023191 180 GYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PF---EYA 249 (286)
Q Consensus 180 ~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~---~~~ 249 (286)
+.+|+++|++.+++ ++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+........... .+ .+.
T Consensus 149 ~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 227 (386)
T 1u08_A 149 FRVDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER 227 (386)
T ss_dssp CCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTT
T ss_pred CcCCHHHHHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCc
Confidence 78999999999976 89999987 666 676654 789999999999999999998754332111110 11 137
Q ss_pred eEEEeCCCCCCCCC--CceEEEEecchhhhhc
Q 023191 250 DVVTTTTHKSLRGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 250 D~v~~s~~K~l~gp--~gG~l~~~~~~~~~~~ 279 (286)
|+++.|+||+|+.| +.|++++++++.+..+
T Consensus 228 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~ 259 (386)
T 1u08_A 228 AVAVSSFGKTYHMTGWKVGYCVAPAPISAEIR 259 (386)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEECCHHHHHHHH
T ss_pred EEEEecchhhcCCcccceEEEEcCHHHHHHHH
Confidence 89999999998633 3599999988766554
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=184.93 Aligned_cols=212 Identities=14% Similarity=0.123 Sum_probs=153.9
Q ss_pred CceecCCCC-CCCHHHHHHhccccccCCCCCCCC--CcccCCcchHHHHHHHHHHHHHHHCCC-CCCCcceeEEeCCChH
Q 023191 48 GLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPG--ARYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP 123 (286)
Q Consensus 48 ~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~v~~~sG~~ 123 (286)
.++|..+++ ++|+.+++++.+.+.+.. +.+. ...|+. ........+++.+++++|. +++ +|++++|++
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~~--~~~~~~~~l~~~la~~~~~~~~~----~v~~~~g~t 100 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSV--RATDAYEAVRNKVAKFINARSPR----EIVYTRNAT 100 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHH--HHHHHHHHHHHHHHHHTTCSCGG----GEEEESSHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcc--CCCCcccchHHH--HHHHHHHHHHHHHHHHcCCCCCC----eEEEcCChH
Confidence 678887766 568999999988876522 1111 111211 1123344567889999998 553 599999988
Q ss_pred -HHHHHHHHh----cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 124 -SNFQVYTAL----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 124 -a~~~~l~a~----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
++.+++.++ +++||+|+++++.|.+...+.. ..+...|.+++.++ .+ +++.+|++++++++++ ++++
T Consensus 101 ~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~----~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~-~~~~ 172 (420)
T 1t3i_A 101 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQ----MVAAKTGAVLKFVQ--LD-EQESFDLEHFKTLLSE-KTKL 172 (420)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHH----HHHHHHCCEEEEEC--BC-TTSSBCHHHHHHHCCT-TEEE
T ss_pred HHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHH----HHHHhcCcEEEEec--cC-CCCCcCHHHHHHhhCC-CceE
Confidence 888899999 8999999999988877532211 11234565555555 44 5678999999999987 8999
Q ss_pred EEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchh
Q 023191 199 IVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (286)
Q Consensus 199 v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (286)
|+++ ++| +|...|+++|.++|++||+++|+|++|+.|....+.... ++|++++|+||.+ ||.| |++++++++.
T Consensus 173 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~sK~~-~~~g~G~~~~~~~~~ 248 (420)
T 1t3i_A 173 VTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI---DCDWLVASGHKMC-APTGIGFLYGKEEIL 248 (420)
T ss_dssp EEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEEGGGTT-SCTTCEEEEECHHHH
T ss_pred EEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhc---CCCEEEEehhhhc-CCCceEEEEEchHHH
Confidence 9887 555 778899999999999999999999999877553222112 3899999999954 6666 9999998876
Q ss_pred hhhc
Q 023191 276 EINK 279 (286)
Q Consensus 276 ~~~~ 279 (286)
+..+
T Consensus 249 ~~~~ 252 (420)
T 1t3i_A 249 EAMP 252 (420)
T ss_dssp HHSC
T ss_pred hhcC
Confidence 6554
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-23 Score=188.71 Aligned_cols=205 Identities=14% Similarity=0.139 Sum_probs=151.7
Q ss_pred cCceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 47 KGLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 47 ~~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
+.+.|+.+.+ ++++.+++++.+.+.+.+ +++.. .+.......++.+++++++++++|++++ +|++++|++ +
T Consensus 20 ~~iyld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~----~v~~~~g~t~a 92 (400)
T 3vax_A 20 HMTYLDAAATTRVDQRVADIVLHWMTAEF--GNAGS-RHEYGIRAKRGVERAREYLASTVSAEPD----ELIFTSGATES 92 (400)
T ss_dssp --CCCCCCCCSSSCHHHHHHHHHHHHHHH--SCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGG----GEEEESCHHHH
T ss_pred CcEEecCCCCCCCCHHHHHHHHHHHHhcc--CCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCC----cEEEeCCHHHH
Confidence 3456654444 678999999998876533 22221 1111223456667788999999999864 499999998 8
Q ss_pred HHHHHHHhc----CCCC-eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEE
Q 023191 125 NFQVYTALL----KPHD-RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (286)
Q Consensus 125 ~~~~l~a~~----~~Gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v 199 (286)
+.+++.+++ ++|| +|++++++|+++......+ ...|.+++.++ .+ +++.+|+++|++++++ ++++|
T Consensus 93 l~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-----~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~-~~~~v 163 (400)
T 3vax_A 93 NNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHL-----AGRGFEVDFLT--PG-PSGRISVEGVMERLRP-DTLLV 163 (400)
T ss_dssp HHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHH-----HTTTCEEEEEC--CC-TTCCCCHHHHHTTCCT-TEEEE
T ss_pred HHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHH-----HhcCCeEEEEc--cC-CCCCcCHHHHHHhcCC-CceEE
Confidence 887888887 8999 9999998887765433211 12455555554 44 4688999999999987 89999
Q ss_pred EEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEE-Eec
Q 023191 200 VAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIF-FRK 272 (286)
Q Consensus 200 ~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~-~~~ 272 (286)
+++ ++| +|...|+++|.++|++||+++|+|++|+.|....+... + +|++++|+|| +.||.| |+++ +++
T Consensus 164 ~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~--~--~d~~~~s~~K-~~g~~g~g~~~~~~~ 235 (400)
T 3vax_A 164 SLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTT--P--IDMISISGHK-IGAPKGVGALVTRRR 235 (400)
T ss_dssp ECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGS--C--CSEEEEETGG-GTSCSSCEEEEECBC
T ss_pred EEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhh--c--CcEEEEeHHH-hCCCCceEEEEEecc
Confidence 987 666 77889999999999999999999999987765543322 1 7899999999 556777 9998 877
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=184.85 Aligned_cols=214 Identities=17% Similarity=0.078 Sum_probs=153.9
Q ss_pred HcCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC
Q 023191 46 WKGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120 (286)
Q Consensus 46 ~~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s 120 (286)
.+.++|..+++ ++++.+++++.+.+.+.. .+ |+...+..++++++.+++.+.+|++.+. .+|++|+
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~------y~~~~g~~~l~~~la~~l~~~~g~~~~~--~~v~~t~ 108 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NY------YGDSEGLPELRKAIVEREKRKNGVDITP--DDVRVTA 108 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CS------CCCTTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEES
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-CC------CCCCCCcHHHHHHHHHHHHHhcCCCCCH--HHEEEcC
Confidence 36789988877 457899999988775421 12 3333556789999999998887764322 3699999
Q ss_pred ChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEE
Q 023191 121 GSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (286)
Q Consensus 121 G~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v 199 (286)
|++ ++.+++.+++++||+|+++++.|.++. ..+...|.+++.++++.+ +++.+|+++|++.+++ ++++|
T Consensus 109 g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~--------~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~-~~~~v 178 (406)
T 1xi9_A 109 AVTEALQLIFGALLDPGDEILVPGPSYPPYT--------GLVKFYGGKPVEYRTIEE-EDWQPDIDDIRKKITD-RTKAI 178 (406)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--------HHHHHTTCEEEEEEEEGG-GTSEECHHHHHHHCCT-TEEEE
T ss_pred ChHHHHHHHHHHhCCCCCEEEEcCCCCccHH--------HHHHHcCCEEEEeecCCC-cCCcCCHHHHHHhhCc-CceEE
Confidence 988 888889999999999999996665543 234456666666654321 3567899999999987 89998
Q ss_pred EEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CC-Ccc-eEEEeCCCCCCC--CCCceEE
Q 023191 200 VAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PF-EYA-DVVTTTTHKSLR--GPRGAMI 268 (286)
Q Consensus 200 ~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~-~~~-D~v~~s~~K~l~--gp~gG~l 268 (286)
+++ ++| +|...+ +++|+++|++||+++|+|++|+.+... +.... .+ .+. |++++|+||+++ |.+.|++
T Consensus 179 ~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 257 (406)
T 1xi9_A 179 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYE-GEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYM 257 (406)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSS-SCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEE
T ss_pred EEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccC-CCCCCHHHcCCCceEEEEeccccccCCCccEEEEE
Confidence 887 666 666555 899999999999999999998765431 11100 01 135 889999999985 3345998
Q ss_pred E--Eec----chhhhhc
Q 023191 269 F--FRK----GVKEINK 279 (286)
Q Consensus 269 ~--~~~----~~~~~~~ 279 (286)
+ .++ ++.+..+
T Consensus 258 ~~~~~~~~~~~l~~~l~ 274 (406)
T 1xi9_A 258 YFVDPENKLSEVREAID 274 (406)
T ss_dssp EEECTTCTTHHHHHHHH
T ss_pred EEecCchhHHHHHHHHH
Confidence 8 777 6655443
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-23 Score=188.05 Aligned_cols=214 Identities=15% Similarity=0.146 Sum_probs=141.2
Q ss_pred cCceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 47 KGLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 47 ~~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
+.+.|+.+.+ ++|+.+++++.+.+.+.+ +|+... |.......++.+.+++++++++|++++ +|++++|++ +
T Consensus 18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~a 90 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAW--GNPSSS-YVAGRKAKDIINTARASLAKMIGGKPQ----DIIFTSGGTES 90 (432)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHHCC--SCTTCS-SHHHHHHHHHHHHHHHHHHHHHTCCGG----GEEEESCHHHH
T ss_pred CcEEeeCCccCCCCHHHHHHHHHHHHHhc--CCCccC-cHHHHHHHHHHHHHHHHHHHHcCCCcC----eEEEeCChHHH
Confidence 4577776665 579999999998876532 343321 222223445566788999999998764 599999988 8
Q ss_pred HHHHHHHhc--------CCCCeEEeccCCCCcccCcc-----ccc----cccccccceeeeEEEecccCCCCCCCCHHHH
Q 023191 125 NFQVYTALL--------KPHDRIMALDLPHGGHLSHG-----YQT----DTKKISAVSIFFETMPYRLNESTGYIDYDQL 187 (286)
Q Consensus 125 ~~~~l~a~~--------~~Gd~Vl~~~~~~~~~~~~~-----~~~----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l 187 (286)
+.+++.+++ ++||+|+++.|.|.++.... +.. ....+...|.+++.++ .+.+++.+|+++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~--~~~~~~~~d~~~l 168 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVP--VSKVNGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEEC--CCTTTSSCCHHHH
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEe--cCcccCCcCHHHH
Confidence 877888775 59999999986665431000 000 0001122455565555 4433578999999
Q ss_pred HHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcC----------CEEEEeccccccccccCCCCCCCCcceEEEeC
Q 023191 188 EKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQK----------AIMLADMAHISGLVAAGVIPSPFEYADVVTTT 255 (286)
Q Consensus 188 ~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~----------~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s 255 (286)
++++++ +|++|+++ ++| +|...|+++|.++|++++ +++|+|++|+.|....++... ++|++++|
T Consensus 169 ~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~---~~d~~~~s 244 (432)
T 3a9z_A 169 LAAVRP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDL---GVDFLTIV 244 (432)
T ss_dssp HHTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHH---CCSEEEEE
T ss_pred HHhccC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhc---CCCEEEEe
Confidence 999987 89999988 555 788999999999999999 999999999876543222111 48999999
Q ss_pred CCCCCCCCCceEEEEecch
Q 023191 256 THKSLRGPRGAMIFFRKGV 274 (286)
Q Consensus 256 ~~K~l~gp~gG~l~~~~~~ 274 (286)
+||++ ||+.|++++++++
T Consensus 245 ~~K~~-g~~~G~~~~~~~~ 262 (432)
T 3a9z_A 245 GHKFY-GPRIGALYVRGVG 262 (432)
T ss_dssp GGGTT-CCSCEEEEETTBT
T ss_pred hhHhc-CCcceEEEEcccc
Confidence 99976 6878999999865
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=185.18 Aligned_cols=228 Identities=15% Similarity=0.185 Sum_probs=153.8
Q ss_pred ccChHHH---HHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccC--C--CCCCCCCcccCCcchHHHHHHHHHHHH
Q 023191 29 VVDPEIA---DIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNK--Y--SEGYPGARYYGGNEYIDMAESLCQKRA 101 (286)
Q Consensus 29 ~~~~~~~---~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~--~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (286)
.+++++. +.+..+..++...+.+...+|. +.|++++.+..... + ..+|. |+. .+.++ +++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~~~gy~----Y~~-~g~~~----Le~~l 83 (427)
T 3hvy_A 15 NINERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTNSSGYG----YND-IGRDS----LDRVY 83 (427)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTC----TTC-HHHHH----HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcccCcCCC----CCc-hhHHH----HHHHH
Confidence 3456555 4444444455555666555554 78888887754321 1 11221 222 23444 44888
Q ss_pred HHHCCCCCCCcceeEE---eCCChHHHHHHHHHhcCCCCeEEecc-CCCCcccCccc--c-ccccccccceeeeEEEecc
Q 023191 102 LEAFRLDPEKWGVNVQ---SLSGSPSNFQVYTALLKPHDRIMALD-LPHGGHLSHGY--Q-TDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 102 ~~~~g~~~~~~~~~v~---~~sG~~a~~~~l~a~~~~Gd~Vl~~~-~~~~~~~~~~~--~-~~~~~~~~~g~~~~~v~~~ 174 (286)
++++|.+. .++ +++|+.++.+++.++++|||+|++.+ +.|.++..... . .....+...|.+++.++
T Consensus 84 A~l~g~e~-----alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~-- 156 (427)
T 3hvy_A 84 ANIFNTES-----AFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVD-- 156 (427)
T ss_dssp HHHHTCSE-----EEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECC--
T ss_pred HHHhCCCc-----eEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEec--
Confidence 99999875 355 56676688889999999999999998 77766531110 0 00012233565555444
Q ss_pred cCCCCCCCCHHHHHHHhhh-cCCcEEEEcC----CC--CCCccCHHHHHHHHHh--cCCEEEEeccccccccccCCCCCC
Q 023191 175 LNESTGYIDYDQLEKSATL-FRPKLIVAGA----SA--YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~-~~tk~v~i~~----~n--~g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
. +++.+|++++++++++ .+||+|+++. ++ ++...++++|+++|++ +|+++++|++|+.+.... .+
T Consensus 157 ~--~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~----~p 230 (427)
T 3hvy_A 157 L--KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEK----EP 230 (427)
T ss_dssp C--BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSS----CG
T ss_pred C--CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCC----CC
Confidence 3 3578999999999983 3899999964 44 4477899999999999 899999999987665321 22
Q ss_pred CC-cceEEEeCCCCCCCC---CCceEEEEecchhhhhcc
Q 023191 246 FE-YADVVTTTTHKSLRG---PRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 246 ~~-~~D~v~~s~~K~l~g---p~gG~l~~~~~~~~~~~~ 280 (286)
+. ++|++++|+||+++| |.||++++++++.+..+.
T Consensus 231 ~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~ 269 (427)
T 3hvy_A 231 TDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATF 269 (427)
T ss_dssp GGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHH
T ss_pred cccCCeEEEECCcccccccccceEEEEEECHHHHHHHHH
Confidence 22 489999999999988 788999999887766553
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=180.88 Aligned_cols=227 Identities=11% Similarity=0.086 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHH----HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC
Q 023191 33 EIADIIEHEKARQ----WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR 106 (286)
Q Consensus 33 ~~~~~~~~~~~~~----~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g 106 (286)
+.+..+....... .+.++|..+++. +++.+++++.+.+.+... ..|+...+..++++++.+++.+.+|
T Consensus 8 ~~~~~~~~~~~~~~~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~~~~~l~~~ia~~~~~~~g 81 (376)
T 2dou_A 8 SVFLVVDEAKRKARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTT------YGYCLKSCTLPFLEEAARWYEGRYG 81 (376)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGG------SSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhhccCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCc------CCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5555554443322 357899888874 589999999887754111 1233335678899888888888889
Q ss_pred CCCCCcce-eEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCH
Q 023191 107 LDPEKWGV-NVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184 (286)
Q Consensus 107 ~~~~~~~~-~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~ 184 (286)
++.+. . +|++|+|++ ++.+++.+++++||+|+++++.|.++. ..+...|.+++.+++ .+++.+|+
T Consensus 82 ~~~~~--~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~--------~~~~~~g~~~~~~~~---~~~~~~d~ 148 (376)
T 2dou_A 82 VGLDP--RREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYF--------GAARVASLRTFLIPL---REDGLADL 148 (376)
T ss_dssp CCCCT--TTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHH--------HHHHHTTCEEEEECB---CTTSSBCG
T ss_pred CCCCC--CccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHH--------HHHHHcCCEEEEeeC---CCCCCCCH
Confidence 85211 1 599999998 887789999999999999996555543 244456666665653 25677999
Q ss_pred HHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCC-CCC---CcceEEEeC
Q 023191 185 DQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPF---EYADVVTTT 255 (286)
Q Consensus 185 e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~~---~~~D~v~~s 255 (286)
+++++.+++ ++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+.+........ ..+ .+.++++.|
T Consensus 149 ~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 227 (376)
T 2dou_A 149 KAVPEGVWR-EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFS 227 (376)
T ss_dssp GGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEE
T ss_pred HHHHHhhcc-CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEec
Confidence 999998876 89999997 666 676655 67889999999999999999876543211000 111 135788999
Q ss_pred CCCCCC--CCCceEEEEecchhhhhc
Q 023191 256 THKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 256 ~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
++|+|+ |.+.|++++++++.+..+
T Consensus 228 ~sK~~~~~G~r~G~~~~~~~~~~~l~ 253 (376)
T 2dou_A 228 LSKSYNLAGFRLGFALGSEEALARLE 253 (376)
T ss_dssp HHHHHTCGGGCCEEEEECHHHHHHHH
T ss_pred chhhcCChhheeEEEecCHHHHHHHH
Confidence 999884 445599999888766554
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=180.90 Aligned_cols=232 Identities=11% Similarity=0.024 Sum_probs=163.1
Q ss_pred cccccChHHHHHHHHHHHH-----HHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHH
Q 023191 26 PLEVVDPEIADIIEHEKAR-----QWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~-----~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (286)
+++.+.++.+..+.+..++ ..+.|+|..+++. +++.+++++.+.+.... +| +...+..++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~y------~~~~g~~~lr~~la 76 (396)
T 3jtx_A 5 LLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHELE--KY------PLTAGLPELRQACA 76 (396)
T ss_dssp HHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGGGGG--SC------CCTTCCHHHHHHHH
T ss_pred hhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhcc--CC------CCCCCcHHHHHHHH
Confidence 3445555555555443322 1357999888874 58999999988775311 23 33345678999999
Q ss_pred HHHHHHCCCC---CCCcceeEEeCCChH-HHHHHHHHhcCCC-----CeEEeccCCCCcccCccccccccccccceeeeE
Q 023191 99 KRALEAFRLD---PEKWGVNVQSLSGSP-SNFQVYTALLKPH-----DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFE 169 (286)
Q Consensus 99 ~~~~~~~g~~---~~~~~~~v~~~sG~~-a~~~~l~a~~~~G-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 169 (286)
+++.+.+|.+ ++. +|++|+|++ ++.+++.+++++| |+|+++.+.|.++ ...+...|.+++
T Consensus 77 ~~l~~~~g~~~~~~~~---~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~--------~~~~~~~g~~~~ 145 (396)
T 3jtx_A 77 NWLKRRYDGLTVDADN---EILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIY--------EGATLLGGGEIH 145 (396)
T ss_dssp HHHHHHTTTCCCCTTT---SEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHH--------HHHHHHTTCEEE
T ss_pred HHHHHhcCCCCCCCCC---eEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhH--------HHHHHHcCCEEE
Confidence 9999999964 541 499999999 8887899999997 7999999555444 334456676666
Q ss_pred EEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCH---HHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 170 TMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDY---ERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 170 ~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l---~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
.+++ +.+++.+|++++++++++ ++++|+++ ++| +|...+. ++|+++|++||+++|+|++|+...........
T Consensus 146 ~v~~--~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~ 222 (396)
T 3jtx_A 146 FANC--PAPSFNPDWRSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLG 222 (396)
T ss_dssp EEEC--CTTTCCCCGGGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCC
T ss_pred Eeec--CCCCCccCHHHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCch
Confidence 6664 445678999999999988 89999997 666 6766664 45999999999999999998753322111100
Q ss_pred C---------CCcceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 245 P---------FEYADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 245 ~---------~~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
. -.+.++++.|++|.++ |.+.|+++.++++.+..+
T Consensus 223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 268 (396)
T 3jtx_A 223 CLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFL 268 (396)
T ss_dssp HHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHH
T ss_pred HHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHH
Confidence 0 0236789999999764 344599999888776554
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-22 Score=176.57 Aligned_cols=227 Identities=14% Similarity=0.068 Sum_probs=156.5
Q ss_pred ccccccccChHHHHHHHHHHHHH---HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHH
Q 023191 23 LNAPLEVVDPEIADIIEHEKARQ---WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLC 97 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~---~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (286)
+++.++.+.++.......+..+. .+.|+|..++++ +++.+++++.+.+.... +|+. .+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~y~~-------~~~~~l---- 72 (363)
T 3ffh_A 6 WKKSLAGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTSKKVAAIQANSSVETE--IYPD-------GWASSL---- 72 (363)
T ss_dssp CCGGGTTCCC----CHHHHHHHTTTCSCCEECSSCSCTTCCCHHHHHHHHTCBSCCC--BC-----------CHHH----
T ss_pred hhHHHHhCCCCCCCCCHHHHHHhcCCCceEEccCCCCCCCCCHHHHHHHHHHHHHhh--cCCC-------cchHHH----
Confidence 34455555565544333332222 357999999885 68999999988775421 2321 233444
Q ss_pred HHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 98 QKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 98 ~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
++.+++++|++++ +|++|+|++ ++.+++.+++++||+|+++++.|.++ ...+...|.+++.++ .+
T Consensus 73 r~~la~~~~~~~~----~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~--------~~~~~~~g~~~~~v~--~~ 138 (363)
T 3ffh_A 73 RKEVADFYQLEEE----ELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQY--------RQNALIEGAEVREIP--LL 138 (363)
T ss_dssp HHHHHHHHTCCGG----GEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHH--------HHHHHHHTCEEEEEE--CC
T ss_pred HHHHHHHhCCChh----hEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHH--------HHHHHHcCCEEEEec--CC
Confidence 4777788888764 499999999 88878999999999999999555443 334456676666565 44
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCC-----C
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPF-----E 247 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~-----~ 247 (286)
+++.+|++++++.+++ ++++|+++ ++| +|...|.++|.++++.+ |+++|+|++|+.... .. ....+ .
T Consensus 139 -~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~~-~~~~~~~~~~~ 214 (363)
T 3ffh_A 139 -QDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVT-PQ-PEKHEKLVRTY 214 (363)
T ss_dssp -TTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCS-SC-CCCCGGGGGTC
T ss_pred -CCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcC-cc-ccCHHHHhhcC
Confidence 3688999999999987 89999997 666 77889999999999888 999999999874332 11 11111 1
Q ss_pred cceEEEeCCCCCCC--CCCceEEEEecchhhhhcc
Q 023191 248 YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 248 ~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~~ 280 (286)
..++++.|++|+++ |.+.|++++++++.+..++
T Consensus 215 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~ 249 (363)
T 3ffh_A 215 KNLIITRTFSKIYGLASARVGYGIADKEIIRQLNI 249 (363)
T ss_dssp TTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHH
T ss_pred CCEEEEeechhhhcCchhceeeeecCHHHHHHHHH
Confidence 24578999999884 3344999998887766554
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=180.80 Aligned_cols=228 Identities=16% Similarity=0.150 Sum_probs=159.8
Q ss_pred cccccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (286)
++++..+.++.+..+.+.. ...+.++|..+++. +++.+.+++.+.+.. . ..| +...+..+++ +.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~-~~y------~~~~~~~~l~----~~l 70 (381)
T 1v2d_A 4 HPRTEAAKESIFPRMSGLA-QRLGAVNLGQGFPSNPPPPFLLEAVRRALGR-Q-DQY------APPAGLPALR----EAL 70 (381)
T ss_dssp CGGGGGC---CHHHHHHHH-HHHTCEECCCCSCSSCCCHHHHHHHHHHTTT-S-CSC------CCTTCCHHHH----HHH
T ss_pred hhhhhhcCccHHHHHHHHH-hcCCeEEecCCCCCCCCCHHHHHHHHHHHHH-h-cCC------CCCCCCHHHH----HHH
Confidence 4555666666676666643 33578999888774 578999999887754 1 122 2223445555 666
Q ss_pred HHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCC
Q 023191 102 LEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180 (286)
Q Consensus 102 ~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 180 (286)
+++++++++ +|++|+|++ ++.+++.+++++||+|+++++.|.++.. .+...|.+++.++++..++++
T Consensus 71 a~~~~~~~~----~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~~~~~~~~~ 138 (381)
T 1v2d_A 71 AEEFAVEPE----SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP--------DAFLAGAKARLVRLDLTPEGF 138 (381)
T ss_dssp HHHHTSCGG----GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HHHHTTCEEEEEECEEETTEE
T ss_pred HHhcCCChh----hEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEEeCCCCCccC
Confidence 667888764 499999998 8888899999999999999977766532 334556666556532102347
Q ss_pred CCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC----CCcceE
Q 023191 181 YIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP----FEYADV 251 (286)
Q Consensus 181 ~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~----~~~~D~ 251 (286)
.+|++++++.+++ ++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+.... +..... ..+.|+
T Consensus 139 ~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~--g~~~~~~~~~~~~~~~ 215 (381)
T 1v2d_A 139 RLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY--GERPRRLREFAPERTF 215 (381)
T ss_dssp ECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS--SSCCCCHHHHCTTTEE
T ss_pred CcCHHHHHHhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc--CCCCCCHHHhcCCCEE
Confidence 8999999999976 88999987 666 676655 88999999999999999999875433 111111 124899
Q ss_pred EEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 252 VTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 252 v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
++.|+||+|+ |.+.|++++++++.+..+
T Consensus 216 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 245 (381)
T 1v2d_A 216 TVGSAGKRLEATGYRVGWIVGPKEFMPRLA 245 (381)
T ss_dssp EEEEHHHHTTCGGGCCEEEECCTTTHHHHH
T ss_pred EEeechhhcCCcccceEEEEeCHHHHHHHH
Confidence 9999999885 334599999988776554
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=180.98 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=153.2
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.|+|..+++ ++++.+++++.+.+.+.. .+|+ .. ..++++++++++++.+|.+.+. .+|++|+|++
T Consensus 28 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~------~~--~~~l~~~la~~l~~~~g~~~~~--~~i~~~~g~~~ 96 (391)
T 3dzz_A 28 KELPMWIAEMDFKIAPEIMASMEEKLKVAA-FGYE------SV--PAEYYKAVADWEEIEHRARPKE--DWCVFASGVVP 96 (391)
T ss_dssp TCEECCSSCCSSCCCHHHHHHHHHHHTTCC-CCCB------CC--CHHHHHHHHHHHHHHHSCCCCG--GGEEEESCHHH
T ss_pred CceeccccCCCCCCCHHHHHHHHHHHhcCc-CCCC------CC--CHHHHHHHHHHHHHHhCCCCCH--HHEEECCCHHH
Confidence 5789988876 468999999998876521 1222 11 4688889999999999843222 3599999988
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.+++.+++++||+|+++.+.|.++.. .+...|.+++.++++....++.+|++++++++++.++++|+++
T Consensus 97 a~~~~~~~l~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 97 AISAMVRQFTSPGDQILVQEPVYNMFYS--------VIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp HHHHHHHHHSCTTCEEEECSSCCHHHHH--------HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred HHHHHHHHhCCCCCeEEECCCCcHHHHH--------HHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 8888999999999999999966665432 4445666665555432223456999999999984489999887
Q ss_pred CCC-CCCc---cCHHHHHHHHHhcCCEEEEeccccccccccCCCCC--CCC--cce--EEEeCCCCCC--CCCCceEEEE
Q 023191 203 ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFE--YAD--VVTTTTHKSL--RGPRGAMIFF 270 (286)
Q Consensus 203 ~~n-~g~~---~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~--~~D--~v~~s~~K~l--~gp~gG~l~~ 270 (286)
++| +|.. .++++|+++|++||+++|+|++|+........... .+. ..| +++.|+||++ .|.+.|++++
T Consensus 169 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~ 248 (391)
T 3dzz_A 169 PHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAII 248 (391)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEEC
T ss_pred CCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEE
Confidence 656 6666 56889999999999999999998754432211111 111 145 8899999987 4455599999
Q ss_pred e-cchhhhhc
Q 023191 271 R-KGVKEINK 279 (286)
Q Consensus 271 ~-~~~~~~~~ 279 (286)
+ +++.+..+
T Consensus 249 ~~~~~~~~~~ 258 (391)
T 3dzz_A 249 PNPDLRARAE 258 (391)
T ss_dssp CSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7 66665554
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-22 Score=179.12 Aligned_cols=216 Identities=11% Similarity=0.029 Sum_probs=155.8
Q ss_pred CceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 48 GLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 48 ~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
.|+|..++. ++++.+++++.+.+.+....+ |+...+..++++++++++++++|.+.+. ..+|++++|++
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~l~~~l~~~l~~~~g~~~~~-~~~i~~~~g~~~ 113 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQA------YTEYRGDLGIRDLLAPRLAAFTGAPVDA-RDGLIITPGTQG 113 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHH------SCCTTCCHHHHHHHHHHHHHHHTSCCCT-TTSEEEESHHHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCC------cCCCCCCHHHHHHHHHHHHHHhCCCCCC-CCcEEEeCCcHH
Confidence 588877543 468899999988876421101 2333456788999999999999984210 01499999998
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc---CCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL---NESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
++..++.+++++||+|+++.+.|.++. ..+...|.+++.+++.. +.+++.+|++++++.+++ ++++|+
T Consensus 114 a~~~~~~~l~~~gd~vl~~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 184 (407)
T 3nra_A 114 ALFLAVAATVARGDKVAIVQPDYFANR--------KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFL 184 (407)
T ss_dssp HHHHHHHTTCCTTCEEEEEESCCTHHH--------HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEE
T ss_pred HHHHHHHHhCCCCCEEEEcCCcccchH--------HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEE
Confidence 888788999999999999996666543 24456676666665421 125678999999999988 899988
Q ss_pred Ec-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC------CCCcceEEEeCCCCCCC--CCCceE
Q 023191 201 AG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS------PFEYADVVTTTTHKSLR--GPRGAM 267 (286)
Q Consensus 201 i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~------~~~~~D~v~~s~~K~l~--gp~gG~ 267 (286)
++ ++| +|...+ +++|+++|++||+++|+|++|+.+......... .....++++.|++|+|+ |.+.|+
T Consensus 185 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 264 (407)
T 3nra_A 185 FSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGV 264 (407)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEE
T ss_pred EcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEE
Confidence 87 766 677777 899999999999999999998765433211110 01136689999999985 344599
Q ss_pred EEEecchhhhhc
Q 023191 268 IFFRKGVKEINK 279 (286)
Q Consensus 268 l~~~~~~~~~~~ 279 (286)
+++++++.+..+
T Consensus 265 ~~~~~~~~~~l~ 276 (407)
T 3nra_A 265 AFGSRAIIARME 276 (407)
T ss_dssp EEECHHHHHHHH
T ss_pred EEcCHHHHHHHH
Confidence 999888776554
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=185.74 Aligned_cols=233 Identities=11% Similarity=0.129 Sum_probs=166.1
Q ss_pred cChHHHHHHHHHHH--------HHHcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 30 VDPEIADIIEHEKA--------RQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 30 ~~~~~~~~~~~~~~--------~~~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
+++..+..+.+... ...+.|+|..+++ .+|+.+.+++.+.+.... ...|+...+..++++++.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~------~~~Y~~~~g~~~lr~~ia~ 106 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPM------VNQYSPTRGRPSLINSLIK 106 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGG------GGSCCCTTCCHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcC------CCCCCCCCCCHHHHHHHHH
Confidence 56667777766542 2246799988876 368999999988775411 1123444567789999999
Q ss_pred HHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-
Q 023191 100 RALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE- 177 (286)
Q Consensus 100 ~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~- 177 (286)
++.+.+|.+.+. .+|++|+|++ ++.+++.++++|||+|+++++.|.++. ..+...|..++.+++..+.
T Consensus 107 ~l~~~~g~~~~~--~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~--------~~~~~~g~~~~~v~~~~~~~ 176 (447)
T 3b46_A 107 LYSPIYNTELKA--ENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYI--------PNIELCGGKVVYVPINPPKE 176 (447)
T ss_dssp HHTTTTTSCCCG--GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH--------HHHHHTTCEEEEEEEECCGG
T ss_pred HHHHhcCCCCCh--hhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHH--------HHHHHcCCEEEEEeCCCccc
Confidence 998888864322 3599999988 888899999999999999996665543 2445667666666543210
Q ss_pred --------CCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCC-
Q 023191 178 --------STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP- 243 (286)
Q Consensus 178 --------~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~- 243 (286)
.++.+|+++|++.+++ ++++|+++ ++| +|... ++++|+++|++||+++|+|++|...........
T Consensus 177 ~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~ 255 (447)
T 3b46_A 177 LDQRNTRGEEWTIDFEQFEKAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRI 255 (447)
T ss_dssp GGTSCBCSTTSEECHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG
T ss_pred cccccccccCcccCHHHHHHhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCH
Confidence 1468999999999986 89999987 666 66554 588999999999999999999875333211000
Q ss_pred CCC----CcceEEEeCCCCCCC--CCCceEEEE-ecchhhhhc
Q 023191 244 SPF----EYADVVTTTTHKSLR--GPRGAMIFF-RKGVKEINK 279 (286)
Q Consensus 244 ~~~----~~~D~v~~s~~K~l~--gp~gG~l~~-~~~~~~~~~ 279 (286)
..+ .+.|+++.|+||+|+ |.+.|++++ ++++.+..+
T Consensus 256 ~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~l~~~l~ 298 (447)
T 3b46_A 256 ATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAA 298 (447)
T ss_dssp GGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHHHHHHHH
T ss_pred HHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHHHHHHHH
Confidence 011 147899999999885 455699999 777766554
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=184.29 Aligned_cols=241 Identities=11% Similarity=0.029 Sum_probs=170.5
Q ss_pred ccccccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHH
Q 023191 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (286)
+++++..++++.+..+.+.. ...+.|+|..+++. +++.+++++.+.+.... ....|+...+..++++++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-----~~~~y~~~~g~~~lr~~la~~ 79 (422)
T 3fvs_A 6 QARRLDGIDYNPWVEFVKLA-SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-----MLNQYTKTFGYPPLTKILASF 79 (422)
T ss_dssp SCGGGTTCCCCHHHHHHHHH-HTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCG-----GGGSCCCTTCCHHHHHHHHHH
T ss_pred HHHHhhccCccHHHHHHHHh-hcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCC-----ccCCCCCCCCCHHHHHHHHHH
Confidence 35566667777777766543 34578999988873 68999999988876521 011233345567899999999
Q ss_pred HHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc----
Q 023191 101 ALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL---- 175 (286)
Q Consensus 101 ~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~---- 175 (286)
+.+.+|.+.+. ..+|++|+|++ ++..++.+++++||+|+++.+.|.++. ..+...|.+++.+++..
T Consensus 80 ~~~~~g~~~~~-~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~--------~~~~~~g~~~~~~~~~~~~~~ 150 (422)
T 3fvs_A 80 FGELLGQEIDP-LRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYE--------PMTMMAGGRPVFVSLKPGPIQ 150 (422)
T ss_dssp HHHHHTCCCCH-HHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH--------HHHHHTTCEEEEEECBCCCCC
T ss_pred HHHhhCCCCCC-CCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhH--------HHHHHcCCEEEEEeccccccc
Confidence 99988875321 01599999999 888789999999999999996665543 23445666666666432
Q ss_pred C-----CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCC---
Q 023191 176 N-----ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVI--- 242 (286)
Q Consensus 176 ~-----~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~--- 242 (286)
+ .+++.+|++++++.+++ ++++|+++ ++| +|... ++++|+++|++||+++|+|++|+.........
T Consensus 151 ~G~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 229 (422)
T 3fvs_A 151 NGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISI 229 (422)
T ss_dssp SSSCCBGGGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred ccccccccCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCCh
Confidence 0 12467999999999987 89999987 666 67666 58999999999999999999987533221111
Q ss_pred -CCCC-CcceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 243 -PSPF-EYADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 243 -~~~~-~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
...- .+.++++.|++|+|+ |.+.|++++++++.+..+
T Consensus 230 ~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~ 270 (422)
T 3fvs_A 230 ASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLR 270 (422)
T ss_dssp GGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHH
T ss_pred hhcccccCcEEEEecchhccCCccceEEEEEeCHHHHHHHH
Confidence 1110 135688999999884 444599999888766554
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=178.36 Aligned_cols=197 Identities=11% Similarity=0.041 Sum_probs=146.1
Q ss_pred CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCC--cceeEEeCCChH-HHHHHHHHhc
Q 023191 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEK--WGVNVQSLSGSP-SNFQVYTALL 133 (286)
Q Consensus 57 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~--~~~~v~~~sG~~-a~~~~l~a~~ 133 (286)
++++.+.+++.+++..... + +...++..++++++++++++++|++.+. . ..+++|+|++ ++..++.++.
T Consensus 53 ~~~~~v~e~~~~a~~~~~~-~------~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~-~~~~~t~ggtea~~~al~a~~ 124 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWI-D------KEEYPQSAAIDLRCVNMVADLWHAPAPKNGQ-AVGTNTIGSSEACMLGGMAMK 124 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTT-C------TTTCHHHHHHHHHHHHHHHHHTTCCCCTTSC-CEEEEESSHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCC-C------hhhChhHHHHHHHHHHHHHHHhCCCcccccC-CceEEeCCHHHHHHHHHHHHH
Confidence 4578889998887754221 1 2334677899999999999999997631 0 1388889998 8877777775
Q ss_pred C--------CC-----CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 134 K--------PH-----DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 134 ~--------~G-----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
+ +| ++|++++ .|.++.. .+...|.+++.++ ++++++.+|+++|++++++ +|++|+
T Consensus 125 ~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~--------~~~~~G~~v~~v~--~~~~~~~~d~~~l~~~i~~-~t~~v~ 192 (452)
T 2dgk_A 125 WRWRKRMEAAGKPTDKPNLVCGP-VQICWHK--------FARYWDVELREIP--MRPGQLFMDPKRMIEACDE-NTIGVV 192 (452)
T ss_dssp HHHHHHHHHTTCCCSCCEEEESS-CCHHHHH--------HHHHTTCEEEECC--CBTTBCSCCHHHHHHHCCT-TEEEEE
T ss_pred HHHHHHHHhcCCCCCCcEEEECC-CcHHHHH--------HHHHcCceEEEEe--cCCCCCeECHHHHHHHHhh-CCEEEE
Confidence 4 55 5899887 6655433 3446676666665 4433689999999999987 899988
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhc------CCEEEEeccccccccc--cCCCCC--CCCcceEEEeCCCCCCCCCCc-eE
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQ------KAIMLADMAHISGLVA--AGVIPS--PFEYADVVTTTTHKSLRGPRG-AM 267 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~------~~~vivD~a~~~g~~~--~~~~~~--~~~~~D~v~~s~~K~l~gp~g-G~ 267 (286)
++ ++| +|.+.|+++|+++|+++ ++++++|+||+.+..+ ...... .+.++|++++++|||+.+|.+ |+
T Consensus 193 ~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~ 272 (452)
T 2dgk_A 193 PTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGW 272 (452)
T ss_dssp CBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEE
T ss_pred EEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEE
Confidence 87 666 78899999999999996 9999999998776542 111111 133699999999999878777 99
Q ss_pred EEEecc
Q 023191 268 IFFRKG 273 (286)
Q Consensus 268 l~~~~~ 273 (286)
++++++
T Consensus 273 ~~~~~~ 278 (452)
T 2dgk_A 273 VIWRDE 278 (452)
T ss_dssp EEESSG
T ss_pred EEEcCH
Confidence 999864
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=182.80 Aligned_cols=177 Identities=18% Similarity=0.150 Sum_probs=136.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--------------CCCeEEeccCCCCc
Q 023191 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK--------------PHDRIMALDLPHGG 148 (286)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~--------------~Gd~Vl~~~~~~~~ 148 (286)
|.......++|+.+++|+++++|.+.+. ..+++++|++ +++.++.+..+ +++.|++++..|.+
T Consensus 127 ~~~~p~~~~le~~~~~~l~~~~g~~~~~--~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s 204 (511)
T 3vp6_A 127 YEIAPVFVLMEQITLKKMREIVGWSSKD--GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS 204 (511)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCSSS--CEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTH
T ss_pred cccCchHHHHHHHHHHHHHHHhCCCCCC--CceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHH
Confidence 3455778899999999999999997432 2588888888 77766666643 67889999977776
Q ss_pred ccCcccccccccccccee---eeEEEecccCCCCCCCCHHHHHHHhhhcC-----CcEEEEc-CCC-CCCccCHHHHHHH
Q 023191 149 HLSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATLFR-----PKLIVAG-ASA-YARLYDYERIRKV 218 (286)
Q Consensus 149 ~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~e~l~~~i~~~~-----tk~v~i~-~~n-~g~~~~l~~I~~i 218 (286)
+.. .+...|. .++.++ .+ +++.+|+++|++++++.+ |++|+++ ++| +|.+.|+++|+++
T Consensus 205 ~~~--------~~~~~g~g~~~~~~v~--~d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~i 273 (511)
T 3vp6_A 205 IKK--------AGAALGFGTDNVILIK--CN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADI 273 (511)
T ss_dssp HHH--------HHHHTTSCGGGEEEEC--BC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHH
T ss_pred HHH--------HHHHcCCCCCcEEEee--cC-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHH
Confidence 643 3344554 455565 44 568999999999997621 7888887 666 7899999999999
Q ss_pred HHhcCCEEEEeccccccccccCCCCC---CCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 219 CNKQKAIMLADMAHISGLVAAGVIPS---PFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 219 a~~~~~~vivD~a~~~g~~~~~~~~~---~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
|++||+++++|+||+.+......... ++.++|++++++||||++|.| |+++++++
T Consensus 274 a~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~ 332 (511)
T 3vp6_A 274 CEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK 332 (511)
T ss_dssp HHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST
T ss_pred HHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH
Confidence 99999999999999988775432222 223589999999999999988 99999875
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-22 Score=179.38 Aligned_cols=213 Identities=13% Similarity=0.062 Sum_probs=152.4
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|..+++. +++.+++++ +.+.+.. .+ |+...+..++++++.+++.+.+|.+.+. .+|++|+|++
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~-~~------y~~~~g~~~l~~~la~~~~~~~g~~~~~--~~v~~~~g~t 112 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENKPEV-VY------YSHSAGIWELREAFASYYKRRQRVDVKP--ENVLVTNGGS 112 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCCSS-CC------CCCTTCCHHHHHHHHHHHHHTSCCCCCG--GGEEEESHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHhcCC-CC------CCCCCCcHHHHHHHHHHHHHHhCCCCCH--HHEEEeCCHH
Confidence 357899888773 578899999 8775421 12 3334556789999999998888764322 3599999988
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.+++++||+|+++++.|.++.. .+...|.+++.++++.+ +++.+ +++|++++++ ++++|+++
T Consensus 113 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~~~~~-~~~~~-~~~l~~~l~~-~~~~v~~~ 181 (409)
T 2gb3_A 113 EAILFSFAVIANPGDEILVLEPFYANYNA--------FAKIAGVKLIPVTRRME-EGFAI-PQNLESFINE-RTKGIVLS 181 (409)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHHTCEEEEEECCGG-GTSCC-CTTGGGGCCT-TEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHH--------HHHHcCCEEEEeccCCC-CCCcc-HHHHHHhhCc-CCeEEEEC
Confidence 8888999999999999999977665532 34456666655653311 24455 8889988877 88998887
Q ss_pred -CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCC--CCCcceEEEeCCCCCCCCC--CceEEEEec-
Q 023191 203 -ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFEYADVVTTTTHKSLRGP--RGAMIFFRK- 272 (286)
Q Consensus 203 -~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~~~D~v~~s~~K~l~gp--~gG~l~~~~- 272 (286)
++| +|... ++++|+++|++||+++|+|++|+.+......... .+.+.|++++|+||+|+.| +.|++++++
T Consensus 182 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 261 (409)
T 2gb3_A 182 NPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE 261 (409)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcH
Confidence 666 66554 4889999999999999999998865442211110 1124799999999998533 359999998
Q ss_pred chhhhhc
Q 023191 273 GVKEINK 279 (286)
Q Consensus 273 ~~~~~~~ 279 (286)
++.+..+
T Consensus 262 ~l~~~l~ 268 (409)
T 2gb3_A 262 ELISHAM 268 (409)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765544
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=173.69 Aligned_cols=206 Identities=17% Similarity=0.205 Sum_probs=150.1
Q ss_pred cCceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 47 KGLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 47 ~~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
..+.|+.+.+ ++++.+++++.+.+.. |..+ .+..++++++++++++++|.+++ +|++++|++ +
T Consensus 14 ~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~----------~g~~~~~~~~~~~l~~~~g~~~~----~v~~~~g~t~a 78 (359)
T 1svv_A 14 KPYSFVNDYSVGMHPKILDLMARDNMT-QHAG----------YGQDSHCAKAARLIGELLERPDA----DVHFISGGTQT 78 (359)
T ss_dssp -CEECSCSCSSCCCHHHHHHHHHHTTC-CCCS----------TTCSHHHHHHHHHHHHHHTCTTS----EEEEESCHHHH
T ss_pred eeEEecCCCcCCCCHHHHHHHHHHHhh-cccc----------ccccHHHHHHHHHHHHHhCCCCc----cEEEeCCchHH
Confidence 4678876555 5789999999987753 3111 22346777888999999998764 599999999 8
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc------CCcE
Q 023191 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF------RPKL 198 (286)
Q Consensus 125 ~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~------~tk~ 198 (286)
+..++.+++++||+|+++++.|.++.... .+...|.+++.++ .+ ++.+|+++|++.+++. ++++
T Consensus 79 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~------~~~~~g~~~~~v~--~~--~~~~d~~~l~~~l~~~~~~~~~~~~~ 148 (359)
T 1svv_A 79 NLIACSLALRPWEAVIATQLGHISTHETG------AIEATGHKVVTAP--CP--DGKLRVADIESALHENRSEHMVIPKL 148 (359)
T ss_dssp HHHHHHHHCCTTEEEEEETTSHHHHSSTT------HHHHTTCCEEEEC--CT--TSCCCHHHHHHHHHHSCSTTSCEEEE
T ss_pred HHHHHHHHhCCCCEEEEcccchHHHHHHH------HHhcCCCeeEEEe--CC--CCeecHHHHHHHHHHHHhccCCCceE
Confidence 88899999999999999997777665420 1334565565555 33 5789999999999873 2889
Q ss_pred EEEcCCC-CCCccC---HHHHHHHHHhcCCEEEEeccc---cccccccCCCCCCC-CcceEEEeCCCCCCCCCCc-eEEE
Q 023191 199 IVAGASA-YARLYD---YERIRKVCNKQKAIMLADMAH---ISGLVAAGVIPSPF-EYADVVTTTTHKSLRGPRG-AMIF 269 (286)
Q Consensus 199 v~i~~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~---~~g~~~~~~~~~~~-~~~D~v~~s~~K~l~gp~g-G~l~ 269 (286)
|+++++| +|...+ +++|.++|++||+++|+|++| ..|....+.....+ ..+|++++++||+ ++|.| |+++
T Consensus 149 v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~ 227 (359)
T 1svv_A 149 VYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALII 227 (359)
T ss_dssp EEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEE
T ss_pred EEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEE
Confidence 9887335 677777 889999999999999999998 43433221111000 1479999999996 67888 9999
Q ss_pred Eecchhhhh
Q 023191 270 FRKGVKEIN 278 (286)
Q Consensus 270 ~~~~~~~~~ 278 (286)
+++++.+..
T Consensus 228 ~~~~~~~~~ 236 (359)
T 1svv_A 228 LNDALKPNA 236 (359)
T ss_dssp CSGGGCTTH
T ss_pred EcccHHHHH
Confidence 988775544
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-22 Score=179.59 Aligned_cols=205 Identities=11% Similarity=0.015 Sum_probs=149.2
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.|+|..++++ +++.+++++.+.+.... +|+. ..+ .+++ +.+++++|++++ +|++|+|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~y~~------~~~-~~lr----~~la~~~~~~~~----~v~~~~g~~ 92 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKAH--LYPD------DSM-IELK----STLAQKYKVQNE----NIIIGAGSD 92 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGTT--SCCC------TTC-HHHH----HHHHHHHTCCGG----GEEEESSHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhhc--cCCC------CCh-HHHH----HHHHHHhCCCcc----eEEECCCHH
Confidence 367999988885 68999999998876422 3332 122 3444 777778888764 599999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.+++++||+|+++.+.|.++. ..+...|.+++.+++ +.+++ +|++++++++++ ++++|+++
T Consensus 93 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~--------~~~~~~g~~~~~v~~--~~~~~-~d~~~l~~~l~~-~~~~v~~~ 160 (365)
T 3get_A 93 QVIEFAIHSKLNSKNAFLQAGVTFAMYE--------IYAKQCGAKCYKTQS--ITHNL-DEFKKLYETHKD-EIKLIFLC 160 (365)
T ss_dssp HHHHHHHHHHCCTTCEEEECSSCCTHHH--------HHHHHHTCEEEECSS--SSCCH-HHHHHHHHHTTT-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCChHHHH--------HHHHHcCCEEEEEec--CCCCC-CCHHHHHHHhCC-CCCEEEEc
Confidence 888789999999999999996655443 244566766655553 23567 999999999986 89999997
Q ss_pred -CCC-CCCccCHHHHHHHHH--hcCCEEEEecccccccc--ccCCCCCCC-----CcceEEEeCCCCCCC--CCCceEEE
Q 023191 203 -ASA-YARLYDYERIRKVCN--KQKAIMLADMAHISGLV--AAGVIPSPF-----EYADVVTTTTHKSLR--GPRGAMIF 269 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~--~~~~~vivD~a~~~g~~--~~~~~~~~~-----~~~D~v~~s~~K~l~--gp~gG~l~ 269 (286)
++| +|...+.+++.++++ ++|+++|+|++|+.... ........+ ...++++.|+||+++ |.+.|+++
T Consensus 161 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~ 240 (365)
T 3get_A 161 LPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGI 240 (365)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEE
T ss_pred CCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEE
Confidence 777 788889888888888 77999999999875442 211111111 125688999999974 44559999
Q ss_pred Eecchhhhhc
Q 023191 270 FRKGVKEINK 279 (286)
Q Consensus 270 ~~~~~~~~~~ 279 (286)
+++++.+..+
T Consensus 241 ~~~~~~~~~~ 250 (365)
T 3get_A 241 ANANIISAFY 250 (365)
T ss_dssp ECHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9887776554
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=173.69 Aligned_cols=205 Identities=11% Similarity=0.053 Sum_probs=150.2
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +++.+++++.+.+.+.. +|+ ..+.. .+++.+++++|++++ +|++++|++
T Consensus 17 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~y~-------~~~~~----~l~~~la~~~~~~~~----~i~~~~g~~~ 79 (354)
T 3ly1_A 17 NPIRINFNENPLGMSPKAQAAARDAVVKAN--RYA-------KNEIL----MLGNKLAAHHQVEAP----SILLTAGSSE 79 (354)
T ss_dssp SCEECSSCCCSSCCCHHHHHHHHHTGGGTT--SCC-------HHHHH----HHHHHHHHHTTSCGG----GEEEESHHHH
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHhhCc--CCC-------CCchH----HHHHHHHHHhCCChH----HEEEeCChHH
Confidence 56899988884 68999999998876421 232 12333 455888888998764 499999998
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh-cCCcEEEEc
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-FRPKLIVAG 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-~~tk~v~i~ 202 (286)
++.+++.+++++||+|+++.+.|.++. ..+...|.+++.++ .+ +++.+|++++++.+++ .++++|+++
T Consensus 80 a~~~~~~~l~~~gd~vl~~~~~~~~~~--------~~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~l~~~~~~~~v~l~ 148 (354)
T 3ly1_A 80 GIRAAIEAYASLEAQLVIPELTYGDGE--------HFAKIAGMKVTKVK--ML-DNWAFDIEGLKAAVAAYSGPSIVYLV 148 (354)
T ss_dssp HHHHHHHHHCCTTCEEEEESSSCTHHH--------HHHHHTTCEEEEEC--CC-TTSCCCHHHHHHHHHTCSSCEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEECCCCchHHH--------HHHHHcCCEEEEec--CC-CCCCCCHHHHHHHhccCCCCCEEEEe
Confidence 888789999999999999996665543 24445676665554 44 4689999999999983 389999997
Q ss_pred -CCC-CCCccCHHHHHHHHHh--cCCEEEEeccccccccccCCCCCCC-----C-cceEEEeCCCCCCC--CCCceEEEE
Q 023191 203 -ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPF-----E-YADVVTTTTHKSLR--GPRGAMIFF 270 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~~~~~~-----~-~~D~v~~s~~K~l~--gp~gG~l~~ 270 (286)
++| +|...+.+++.++++. ||+++|+|++|+..... +.....+ . +.++++.|+||+++ |.+.|++++
T Consensus 149 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 227 (354)
T 3ly1_A 149 NPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVND-PRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVA 227 (354)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCC-TTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEEC
T ss_pred CCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccc-cccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeec
Confidence 666 7788888888888877 99999999998744332 1111111 0 25688999999984 334499999
Q ss_pred ecchhhhhcc
Q 023191 271 RKGVKEINKQ 280 (286)
Q Consensus 271 ~~~~~~~~~~ 280 (286)
++++.+..++
T Consensus 228 ~~~~~~~~~~ 237 (354)
T 3ly1_A 228 HPTVIALMGR 237 (354)
T ss_dssp CHHHHHHHGG
T ss_pred CHHHHHHHHH
Confidence 8887766654
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-22 Score=180.09 Aligned_cols=173 Identities=14% Similarity=0.130 Sum_probs=126.9
Q ss_pred HHHHHHHHHCCCCCCCcceeEE---eCCChHHHHHHHHHhcCCCCeEEecc-CCCCcccCccc--ccc-ccccccceeee
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQ---SLSGSPSNFQVYTALLKPHDRIMALD-LPHGGHLSHGY--QTD-TKKISAVSIFF 168 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~---~~sG~~a~~~~l~a~~~~Gd~Vl~~~-~~~~~~~~~~~--~~~-~~~~~~~g~~~ 168 (286)
.+++.+++++|.+. .++ +++|+.++.+++.++++|||+|++.+ +.|+++....- ... ...+...|.++
T Consensus 77 ~Le~~lA~l~g~e~-----alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~ 151 (427)
T 3i16_A 77 SLDAVYARVFNTES-----ALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINY 151 (427)
T ss_dssp HHHHHHHHHHTCSE-----EEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEE
T ss_pred HHHHHHHHHhCCcc-----eEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEE
Confidence 34478999999875 355 56676688889999999999999998 77776542110 000 01223346555
Q ss_pred EEEecccCCCCCCCCHHHHHHHhhh-cCCcEEEEcC----CC--CCCccCHHHHHHHHHh--cCCEEEEecccccccccc
Q 023191 169 ETMPYRLNESTGYIDYDQLEKSATL-FRPKLIVAGA----SA--YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAA 239 (286)
Q Consensus 169 ~~v~~~~~~~~~~~d~e~l~~~i~~-~~tk~v~i~~----~n--~g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~ 239 (286)
+.++ .+ +++.+|++++++++++ .+||+|+++. ++ +|.+.++++|+++|++ +|+++++|++|+.+....
T Consensus 152 ~~v~--~~-~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~ 228 (427)
T 3i16_A 152 KQVD--LK-EDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTK 228 (427)
T ss_dssp EECC--CC-TTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSS
T ss_pred EEec--Cc-cCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccC
Confidence 4444 44 4578999999999982 2899999964 44 4578899999999999 999999999987665321
Q ss_pred CCCCCCCC-cceEEEeCCCCCCCC---CCceEEEEecchhhhhcc
Q 023191 240 GVIPSPFE-YADVVTTTTHKSLRG---PRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 240 ~~~~~~~~-~~D~v~~s~~K~l~g---p~gG~l~~~~~~~~~~~~ 280 (286)
.++. ++|++++|+||+++| +.||++++++++.+..+.
T Consensus 229 ----~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~ 269 (427)
T 3i16_A 229 ----EPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSY 269 (427)
T ss_dssp ----CGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHH
T ss_pred ----CccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHH
Confidence 1222 589999999999988 788999999888766653
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=177.82 Aligned_cols=213 Identities=11% Similarity=0.021 Sum_probs=154.9
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|..++++ +++.+++++.+.+.+....+| +...+..++++++.+++.+.+|++.+. .+|++|+|++
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y------~~~~g~~~lr~~la~~~~~~~g~~~~~--~~i~~t~g~t 115 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIY------PNLDGLPELKQEASRFAKLFVNIDIPA--RACVPTVGSM 115 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSC------CCTTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEESHHH
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCC------CCCCChHHHHHHHHHHHHHhhCCCCCc--ccEEEeCCHH
Confidence 367999988874 589999999888764211123 333456789989999998888864332 3699999999
Q ss_pred -HHHHHHHHhc--CCCC--eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 124 -SNFQVYTALL--KPHD--RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 124 -a~~~~l~a~~--~~Gd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
++.+++.+++ ++|| +|+++.+.|.++ ...+...|.+++.++++ ++++.+|+++|++++...++++
T Consensus 116 ~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~--------~~~~~~~g~~~~~v~~~--~~~~~~d~~~l~~~l~~~~~~~ 185 (437)
T 3g0t_A 116 QGCFVSFLVANRTHKNREYGTLFIDPGFNLN--------KLQCRILGQKFESFDLF--EYRGEKLREKLESYLQTGQFCS 185 (437)
T ss_dssp HHHHHHHHHHTTSCTTCSCCEEEEESCCHHH--------HHHHHHHTCCCEEEEGG--GGCTTHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHHHHhcCCCCCccEEEEeCCCcHhH--------HHHHHHcCCEEEEEeec--CCCCccCHHHHHHHHhcCCceE
Confidence 8887889998 9999 999999655544 33445667767667643 3567899999999994338999
Q ss_pred EEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCC-------CCC---CcceEEEeCCCCCCC--
Q 023191 199 IVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-------SPF---EYADVVTTTTHKSLR-- 261 (286)
Q Consensus 199 v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-------~~~---~~~D~v~~s~~K~l~-- 261 (286)
|+++ ++| +|...+ +++|+++|++||+++|+|++|+.......... ..+ .+.++++.|+||+++
T Consensus 186 v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 265 (437)
T 3g0t_A 186 IIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYA 265 (437)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCG
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCc
Confidence 9886 766 676665 77789999999999999999875433211100 111 236688999999874
Q ss_pred CCCceEEEEecchhh
Q 023191 262 GPRGAMIFFRKGVKE 276 (286)
Q Consensus 262 gp~gG~l~~~~~~~~ 276 (286)
|.+.|++++++++.+
T Consensus 266 G~r~G~~~~~~~~~~ 280 (437)
T 3g0t_A 266 GQRIGVLMISGKLYE 280 (437)
T ss_dssp GGCCEEEEECHHHHH
T ss_pred cceeEEEEECHHHhh
Confidence 334599999887766
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-22 Score=183.09 Aligned_cols=238 Identities=13% Similarity=0.039 Sum_probs=160.0
Q ss_pred cccccccChHHHHHHHHHHHHH--HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQ--WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
++++..+.++.+..+.+..... .+.++|..+++. +++.+++++.+.+......+ |+...+..++++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~lr~~ia~ 96 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKIEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK------YGAFHGKEAFKQAIVD 96 (404)
T ss_dssp CHHHHTSCCCTTC-------CCCSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHS------CCCTTCCHHHHHHHHH
T ss_pred hhHhhhCCchHHHHHHHHHHhcCCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCC------CCCCCCCHHHHHHHHH
Confidence 3444445554444444332211 246899888774 57899999988774311111 2333456789988889
Q ss_pred HHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCC
Q 023191 100 RALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178 (286)
Q Consensus 100 ~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 178 (286)
++++.+|++.+. ..+|++|+|++ ++.+++.+++++||+|+++++.|.++.. .+...|.+++.++ .+.+
T Consensus 97 ~~~~~~g~~~~~-~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~--------~~~~~g~~~~~v~--~~~~ 165 (404)
T 2o1b_A 97 FYQRQYNVTLDK-EDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLA--------GVLLADGKPVPLN--LEPP 165 (404)
T ss_dssp HHHHHHCCCCCT-TTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHH--------HHHHTTCEEEEEE--CCTT
T ss_pred HHHHHhCCCCCC-cccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH--------HHHHCCCEEEEec--cCcc
Confidence 988888975210 01599999998 8888999999999999999966655432 3445666565555 4434
Q ss_pred CCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCC-CCCCC---cc
Q 023191 179 TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVI-PSPFE---YA 249 (286)
Q Consensus 179 ~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-~~~~~---~~ 249 (286)
++.+|+++|++.+++ ++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+......... ...+. +.
T Consensus 166 ~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 244 (404)
T 2o1b_A 166 HYLPDWSKVDSQIID-KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDV 244 (404)
T ss_dssp TCCCCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHH
T ss_pred cCcCCHHHHHHhhcc-CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCC
Confidence 567899999999876 89999997 666 676654 7889999999999999999987643321100 01111 35
Q ss_pred eEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 250 DVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 250 D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
++++.|+||+|+ |.+.|++++++++.+..+
T Consensus 245 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~ 276 (404)
T 2o1b_A 245 AIEIYSLSKGYNMSGFRVGFAVGNKDMIQALK 276 (404)
T ss_dssp EEEEEESTTTTTCGGGCCEEEEECHHHHHHHH
T ss_pred EEEEEecchhccCchhheEeEecCHHHHHHHH
Confidence 789999999985 344599999888766554
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=174.46 Aligned_cols=238 Identities=14% Similarity=0.070 Sum_probs=161.2
Q ss_pred hccccccccChHHHHHHHHHHHH--HH--cCceecCCCCC----CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHH
Q 023191 22 QLNAPLEVVDPEIADIIEHEKAR--QW--KGLELIPSENF----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 93 (286)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~i~L~~~e~~----~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 93 (286)
++++++..+.+..+..+...... .. +.|+|..+.+. +++.+.+++.+.+.+.. .... |+...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~----~~~~-y~~~~~~~~l 80 (407)
T 2zc0_A 6 YLAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEP----KSVM-YTPANGIPEL 80 (407)
T ss_dssp GSCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCG----GGGS-CCCTTCCHHH
T ss_pred hhhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcc----cccc-CCCCCCCHHH
Confidence 34555555665555555444331 23 57899776542 56788898888775421 0111 3444567889
Q ss_pred HHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEe
Q 023191 94 ESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (286)
Q Consensus 94 ~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (286)
++++.+++.+.+|++.+. .+|++|+|++ ++.+++.+++++||+|+++.+.|.++. ..+...|.+++.++
T Consensus 81 ~~~la~~~~~~~g~~~~~--~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~--------~~~~~~g~~~~~v~ 150 (407)
T 2zc0_A 81 REELAAFLKKYDHLEVSP--ENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTL--------LAFEQLGAKIEGVP 150 (407)
T ss_dssp HHHHHHHHHHHSCCCCCG--GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--------HHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCc--ceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH--------HHHHHcCCEEEEcc
Confidence 999999998888853221 3599999988 888899999999999999996655542 23445666666565
Q ss_pred cccCCCCCCCCHHHHHHHhh----h-cCCcEEE-Ec-CCC-CCCccCHH---HHHHHHHhcCCEEEEeccccccccccCC
Q 023191 173 YRLNESTGYIDYDQLEKSAT----L-FRPKLIV-AG-ASA-YARLYDYE---RIRKVCNKQKAIMLADMAHISGLVAAGV 241 (286)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~----~-~~tk~v~-i~-~~n-~g~~~~l~---~I~~ia~~~~~~vivD~a~~~g~~~~~~ 241 (286)
+ + ++ .+|++++++.++ + .++++|+ ++ ++| +|...|.+ +|+++|++||+++|+|++|+.+......
T Consensus 151 ~--~-~~-~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 226 (407)
T 2zc0_A 151 V--D-ND-GMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGD 226 (407)
T ss_dssp E--E-TT-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSS
T ss_pred c--C-CC-CCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCC
Confidence 4 3 22 389999999987 4 2678875 45 556 67777765 9999999999999999998765432211
Q ss_pred CCC--CCC--cceEEEeCCCCCCCCC--CceEEEEecchhhhhc
Q 023191 242 IPS--PFE--YADVVTTTTHKSLRGP--RGAMIFFRKGVKEINK 279 (286)
Q Consensus 242 ~~~--~~~--~~D~v~~s~~K~l~gp--~gG~l~~~~~~~~~~~ 279 (286)
... .+. +.++++.|++|+|+ | +.|++++++++.+..+
T Consensus 227 ~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~ 269 (407)
T 2zc0_A 227 IVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVL 269 (407)
T ss_dssp CCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHH
T ss_pred CCChhhcCCCCCEEEEcccccccC-CCcceEEEecCHHHHHHHH
Confidence 110 011 24578999999997 4 4699999887766554
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-21 Score=171.90 Aligned_cols=215 Identities=12% Similarity=0.041 Sum_probs=154.1
Q ss_pred CceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 48 GLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
.++|..++++ +++.+.+++.+.+.+... ....|+...+ .++++++.+++.+.+|...+. .+|++++|++ +
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~----~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~--~~v~~~~G~~~a 104 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIAT----ELNRYPERDA-VELRDELAAYITKQTGVAVTR--DNLWAANGSNEI 104 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGG----GTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCG--GGEEEESHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhccc----ccccCCCccH-HHHHHHHHHhhhhcccCCCCh--HhEEECCChHHH
Confidence 3889888874 589999999887754100 0011222233 588888888888876653221 3599999998 7
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-C
Q 023191 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A 203 (286)
Q Consensus 125 ~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~ 203 (286)
+.+++.+++++||+|+++++.|.++.. .+...|.+++.++ .+ +++.+|++++++.+++.++++|+++ +
T Consensus 105 l~~~~~~l~~~gd~Vl~~~~~y~~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~ 173 (369)
T 3cq5_A 105 LQQLLQAFGGPGRTALGFQPSYSMHPI--------LAKGTHTEFIAVS--RG-ADFRIDMDVALEEIRAKQPDIVFVTTP 173 (369)
T ss_dssp HHHHHHHHCSTTCEEEEEESSCTHHHH--------HHHHTTCEEEEEE--CC-TTSSCCHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHhcCCCCEEEEcCCChHHHHH--------HHHHcCCEEEEec--CC-cCCCCCHHHHHHHhhccCCCEEEEeCC
Confidence 777889999999999999977665532 3445566565555 44 4578999999999876579999997 6
Q ss_pred CC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC-CCCc-ceEEEeCCCCCCCC--CCceEEEEecchhhhh
Q 023191 204 SA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-PFEY-ADVVTTTTHKSLRG--PRGAMIFFRKGVKEIN 278 (286)
Q Consensus 204 ~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~-~~~~-~D~v~~s~~K~l~g--p~gG~l~~~~~~~~~~ 278 (286)
+| +|...|.+++.++|+.+++++|+|++|+.+......... ...+ .++++.|+||+|+. .+.|++++++++.+..
T Consensus 174 ~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l 253 (369)
T 3cq5_A 174 NNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAV 253 (369)
T ss_dssp CTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHH
Confidence 66 778899999999999999999999998865432111100 1013 56889999999853 3449999998877665
Q ss_pred cc
Q 023191 279 KQ 280 (286)
Q Consensus 279 ~~ 280 (286)
++
T Consensus 254 ~~ 255 (369)
T 3cq5_A 254 ML 255 (369)
T ss_dssp HT
T ss_pred HH
Confidence 54
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=179.27 Aligned_cols=244 Identities=11% Similarity=0.026 Sum_probs=167.8
Q ss_pred CCCchhhccccccccChHHHHHHHHHHHHHHcCceecCCCC----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHH
Q 023191 16 GVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSEN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYID 91 (286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (286)
...|..+++++.....+..++.+.... ...+.|+|..|.+ ++++.+.+++.+.+..... ....|+...+..
T Consensus 47 ~~~~~~~~s~~~~~~~~s~~~~~~~~~-~~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~----~~~~Y~~~~g~~ 121 (448)
T 3aow_A 47 LGDVERFFSKKALEMRASEVRELLKLV-ETSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYAD----KALQYGTTKGFT 121 (448)
T ss_dssp TSCGGGGCCHHHHHCCCCHHHHHHHHH-HTSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHH----HHHSCCCTTCCH
T ss_pred ccchHHHhhHHHhcCCCcHHHHHHHhc-cCCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhH----HHhCCCCCCCcH
Confidence 355776777767667776666655532 3456789987765 2567888888877654100 001234445678
Q ss_pred HHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEE
Q 023191 92 MAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 170 (286)
Q Consensus 92 ~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 170 (286)
++++++.+++.+.+|++ +. .+|++|+|++ ++.+++.+++++||+|+++++.|.++. ..+...|.+++.
T Consensus 122 ~lr~~ia~~~~~~~g~~-~~--~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~--------~~~~~~g~~~~~ 190 (448)
T 3aow_A 122 PLRETLMKWLGKRYGIS-QD--NDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAAL--------QAFNFYEPQYIQ 190 (448)
T ss_dssp HHHHHHHHHHHHHHCCC-TT--SEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--------HHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHhcCcC-Ch--hhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHH--------HHHHHcCCEEEE
Confidence 89988888887778983 22 3699999999 888799999999999999996555443 344556766655
Q ss_pred EecccCCCCCCCCHHHHHHHhh----h-cCCcEEEE-c-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccccccc
Q 023191 171 MPYRLNESTGYIDYDQLEKSAT----L-FRPKLIVA-G-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA 239 (286)
Q Consensus 171 v~~~~~~~~~~~d~e~l~~~i~----~-~~tk~v~i-~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~ 239 (286)
++ .+ ++ .+|+++|++.++ + .++|+|++ + ++| +|...+ +++|+++|++||+++|+|++|+......
T Consensus 191 v~--~~-~~-g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g 266 (448)
T 3aow_A 191 IP--LD-DE-GMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSG 266 (448)
T ss_dssp EE--EE-TT-EECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSS
T ss_pred ec--cC-CC-CCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCC
Confidence 65 44 22 389999999987 3 27888854 5 566 676655 6789999999999999999987654322
Q ss_pred CCCCC--CC--CcceEEEeCCCCCCC-CCCceEEEEecchhhhhc
Q 023191 240 GVIPS--PF--EYADVVTTTTHKSLR-GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 240 ~~~~~--~~--~~~D~v~~s~~K~l~-gp~gG~l~~~~~~~~~~~ 279 (286)
..... .+ .+.++++.|++|+|+ |.+.|++++++++.+..+
T Consensus 267 ~~~~~~~~~~~~~~vi~~~S~SK~~~~GlriG~v~~~~~l~~~l~ 311 (448)
T 3aow_A 267 NPEKKIKALDNEGRVIYLGTFSKILAPGFRIGWMVGDPGIIRKME 311 (448)
T ss_dssp CCCCCTGGGCTTSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHH
T ss_pred CCCcCHHhcCCCCCEEEEccchhhccccccEEEEEeCHHHHHHHH
Confidence 11111 11 135788999999986 223499999988766554
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-22 Score=176.01 Aligned_cols=205 Identities=10% Similarity=0.003 Sum_probs=147.5
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
+.++++++...+|+.+++++.+.+.+... ++. .......++.+.+++++++++|.+.. .+|++++|++ ++
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~---~~v~~~~g~t~al 74 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKIG-VIS-----HRSKKFEEVYKTASDNLKTLLELPSN---YEVLFLASATEIW 74 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTTT-TSC-----TTSHHHHHHHHHHHHHHHHHTTCCTT---EEEEEESCHHHHH
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCcc-CcC-----CCCHHHHHHHHHHHHHHHHHhCCCCC---cEEEEeCCchHHH
Confidence 35788888888899999888777655220 111 11234456777888999999998532 3699999988 88
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CC
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~ 204 (286)
.++++++++| .+++..+.+.++ .. ...+...|.+++.++ .+ +++.+|+++++ +++ +||+|+++ ++
T Consensus 75 ~~~~~~l~~~--~~i~~~~~~~~~--~~----~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~--~~~-~~~~v~~~~~~ 140 (362)
T 3ffr_A 75 ERIIQNCVEK--KSFHCVNGSFSK--RF----YEFAGELGREAYKEE--AA-FGKGFYPADIT--VPA-DAEIICLTHNE 140 (362)
T ss_dssp HHHHHHHCSS--EEEEEECSHHHH--HH----HHHHHHTTCEEEEEE--CC-TTCCCCGGGCC--CCT-TCCEEEEESEE
T ss_pred HHHHHhccCC--cEEEEcCcHHHH--HH----HHHHHHhCCCeEEEe--cC-CCCCCCHHHHh--ccC-CccEEEEEcCC
Confidence 8899999988 444444322221 00 112334566666665 33 46789999998 655 89999997 65
Q ss_pred C-CCCccCHHHHHHHHHhc-CCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 205 A-YARLYDYERIRKVCNKQ-KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 205 n-~g~~~~l~~I~~ia~~~-~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
| +|...|+++|.++|++| |+++|+|++|+.+....+. ..+|++++|+||+|+||.| |++++++++.+..+
T Consensus 141 nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~-----~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~ 213 (362)
T 3ffr_A 141 TSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDW-----TKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSK 213 (362)
T ss_dssp TTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCT-----TSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHH
T ss_pred CCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccCh-----hHCcEEEEecccccCCCCceEEEEECHHHHHHhh
Confidence 5 77889999999999999 9999999999877654332 2289999999999998888 99999987655443
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-22 Score=187.59 Aligned_cols=173 Identities=12% Similarity=0.075 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCe---EEeccCCCCcccCccccccccccccceeee
Q 023191 93 AESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDR---IMALDLPHGGHLSHGYQTDTKKISAVSIFF 168 (286)
Q Consensus 93 l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~---Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 168 (286)
+.+.+++++++++|++++ +|++|+|++ ++.+++.++++|||. |++..+.|++...+... .+...|..+
T Consensus 112 ~~~~l~~~la~~~g~~~~----~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~----~~~~~G~~~ 183 (465)
T 3e9k_A 112 GDESIVGLMKDIVGANEK----EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIES----QLQLHGLNI 183 (465)
T ss_dssp TTHHHHGGGHHHHTCCGG----GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHH----HHHHTTCCH
T ss_pred hHHHHHHHHHHHcCCCcC----CEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHH----HHHHcCCcc
Confidence 344567899999999864 599999999 777788999887766 99999888775433221 112233322
Q ss_pred -----EEEecccCCCCCCCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEecccccccccc
Q 023191 169 -----ETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 239 (286)
Q Consensus 169 -----~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~ 239 (286)
...+ .+ +++.+|+++|++++++ .++++|+++ ++| +|...|+++|.++|++||++||+|++|+.|..+.
T Consensus 184 ~~~~v~~~~--~~-~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~ 260 (465)
T 3e9k_A 184 EESMRMIKP--RE-GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVEL 260 (465)
T ss_dssp HHHEEEECC--CT-TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC
T ss_pred eeeeEEEec--CC-CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCC
Confidence 2222 23 5678999999999973 278999887 666 7889999999999999999999999999988765
Q ss_pred CCCCCCCCcceEEEeCCCCCC-CCCCc-eEEEEecchhhhhc
Q 023191 240 GVIPSPFEYADVVTTTTHKSL-RGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 240 ~~~~~~~~~~D~v~~s~~K~l-~gp~g-G~l~~~~~~~~~~~ 279 (286)
++.... +|++++|+||++ +||.| |++++++++.+..+
T Consensus 261 ~~~~~~---~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~ 299 (465)
T 3e9k_A 261 YLHDWG---VDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIK 299 (465)
T ss_dssp CHHHHT---CCEEEECSSSTTCCCTTCCCEEEECGGGTTTSC
T ss_pred chhhcC---CCEEEECcccccccCCCceEEEEEcHHHHhhcC
Confidence 544444 899999999999 48888 99999988765443
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-22 Score=182.42 Aligned_cols=237 Identities=11% Similarity=0.025 Sum_probs=163.5
Q ss_pred cccccChHHHHHHHHHHHHHHcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHH
Q 023191 26 PLEVVDPEIADIIEHEKARQWKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (286)
++..++++.+..+.+.. ...+.|+|..+++. +++.+++++.+.+.+....+ |+...+..++++++.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~l~~~la~~~~~ 76 (410)
T 3e2y_A 4 RIEGLDSNVWVEFTKLA-ADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQ------YTRGFGHPALVKALSCLYGK 76 (410)
T ss_dssp GGTTCCCCHHHHTTTTT-TSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGS------CCCTTCCHHHHHHHHHHHHH
T ss_pred hhccCCccHHHHHHHHh-cCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccC------CCCCCChHHHHHHHHHHHHH
Confidence 34445555555544321 22467999988873 68999999988775421112 33334567899899999988
Q ss_pred HCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC------
Q 023191 104 AFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN------ 176 (286)
Q Consensus 104 ~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~------ 176 (286)
.+|.+.+. ..+|++++|++ ++..++.+++++||+|+++.+.|.++. ..+...|..++.+++...
T Consensus 77 ~~~~~~~~-~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~--------~~~~~~g~~~~~~~~~~~~~~g~~ 147 (410)
T 3e2y_A 77 IYQRQIDP-NEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYE--------PMVRMAGAVPVFIPLRSKPTDGMK 147 (410)
T ss_dssp HHTSCCCT-TTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHH--------HHHHHTTCEEEEEECEECCCCSSC
T ss_pred HhCCCCCC-CCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhH--------HHHHHcCCEEEEEecccccccccc
Confidence 88864311 01599999998 888899999999999999996665543 244456666666664421
Q ss_pred --CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCc---cCHHHHHHHHHhcCCEEEEeccccccccccCCCCC--CCC
Q 023191 177 --ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFE 247 (286)
Q Consensus 177 --~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~---~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~ 247 (286)
..++.+|++++++.+++ ++++|+++ ++| +|.. .++++|+++|++||+++|+|++|+........... .+.
T Consensus 148 ~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 226 (410)
T 3e2y_A 148 WTSSDWTFDPRELESKFSS-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLP 226 (410)
T ss_dssp CBGGGEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred ccccCCcCCHHHHHhhcCC-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcC
Confidence 13457899999999977 89999987 666 6655 46889999999999999999998643322111110 011
Q ss_pred ---cceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 248 ---YADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 248 ---~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
..++++.|++|+|+ |.+.|++++++++.+..+
T Consensus 227 ~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~ 263 (410)
T 3e2y_A 227 GMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQ 263 (410)
T ss_dssp TCGGGEEEEEEHHHHSSCGGGCCEEEECCHHHHHHHH
T ss_pred CccCeEEEEecchhhcCCCCceEEEEEECHHHHHHHH
Confidence 24588999999885 444599999988766554
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-21 Score=177.96 Aligned_cols=199 Identities=11% Similarity=0.029 Sum_probs=147.1
Q ss_pred CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC--CCCcceeEEeCCChH-HHHHHHHHh
Q 023191 56 NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNVQSLSGSP-SNFQVYTAL 132 (286)
Q Consensus 56 ~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~~~~~v~~~sG~~-a~~~~l~a~ 132 (286)
.++++.+.+++.+++...+. + +.......++++.+++++++++|++ +++. ..-.+++|++ +++.++.++
T Consensus 66 ~~~~~~v~~~l~~~~~~~~~--~-----~~~~p~~~~le~~~~~~la~l~g~~~~~~~~-~~g~~t~ggtea~~~a~~a~ 137 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINKNYV--D-----MDEYPVTTELQNRCVNMIAHLFNAPLEEAET-AVGVGTVGSSEAIMLAGLAF 137 (502)
T ss_dssp CCCCHHHHHHHHHTTTCBTT--C-----TTTCHHHHHHHHHHHHHHHHHTTCCCCSSCC-CEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccCCC--C-----hhcChhHHHHHHHHHHHHHHHhCCCcccccC-CcceecCcHHHHHHHHHHHH
Confidence 34689999999888765331 1 1233557899999999999999997 4331 1123467777 887777777
Q ss_pred cCC--------CC-----eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEE
Q 023191 133 LKP--------HD-----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (286)
Q Consensus 133 ~~~--------Gd-----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v 199 (286)
..+ |+ +|+++++.|.++. ..+...|..++.++ ++.+++.+|+++|++++++ +|++|
T Consensus 138 ~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~--------~~~~~~G~~~~~v~--~~~~~~~~d~~~l~~~i~~-~t~~v 206 (502)
T 3hbx_A 138 KRKWQNKRKAEGKPVDKPNIVTGANVQVCWE--------KFARYFEVELKEVK--LSEGYYVMDPQQAVDMVDE-NTICV 206 (502)
T ss_dssp HHHHHHHHHHTTCCCSCCEEEEETTCCHHHH--------HHHHHTTCEEEEEC--CBTTBCSCCHHHHHHHCCT-TEEEE
T ss_pred HHHHhHHHHhcCCCCCCcEEEEcCCchHHHH--------HHHHHcCceeEEEe--cCCCcCcCCHHHHHHHHhh-CCEEE
Confidence 655 77 8999986665543 34556777776666 4434589999999999988 89988
Q ss_pred EEc-CCC-CCCccCHHHHHHHHHhc------CCEEEEeccccccccc--cCCCCCC--CCcceEEEeCCCCCCCCCCc-e
Q 023191 200 VAG-ASA-YARLYDYERIRKVCNKQ------KAIMLADMAHISGLVA--AGVIPSP--FEYADVVTTTTHKSLRGPRG-A 266 (286)
Q Consensus 200 ~i~-~~n-~g~~~~l~~I~~ia~~~------~~~vivD~a~~~g~~~--~~~~~~~--~~~~D~v~~s~~K~l~gp~g-G 266 (286)
+++ ++| +|...|+++|.++|+++ |+++++|+||+.+..+ .+..+.. ..++|++++++|||+.+|.| |
T Consensus 207 ~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G 286 (502)
T 3hbx_A 207 AAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIG 286 (502)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCE
T ss_pred EEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeE
Confidence 886 666 78999999999999999 9999999998755431 1111221 23699999999999989988 9
Q ss_pred EEEEecc
Q 023191 267 MIFFRKG 273 (286)
Q Consensus 267 ~l~~~~~ 273 (286)
+++++++
T Consensus 287 ~~~~~~~ 293 (502)
T 3hbx_A 287 WVIWRNK 293 (502)
T ss_dssp EEEESSG
T ss_pred EEEEeCH
Confidence 8888764
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=176.23 Aligned_cols=210 Identities=13% Similarity=0.169 Sum_probs=151.9
Q ss_pred HcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC--CCCCCcceeEEeCCC
Q 023191 46 WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQSLSG 121 (286)
Q Consensus 46 ~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g--~~~~~~~~~v~~~sG 121 (286)
.+.++|..+++ ++++.+++++.+.+.+.. .+| + .+..++++++++++++++| ++++ +|++|+|
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y------~--~~~~~~~~~l~~~l~~~~g~~~~~~----~v~~~~g 98 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI-YGY------T--TRPDSYNESIVNWLYRRHNWKIKSE----WLIYSPG 98 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC-CCC------B--CCCHHHHHHHHHHHHHHHCCCCCGG----GEEEESC
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCC-CCC------C--CCCHHHHHHHHHHHHHHhCCCCcHH----HeEEcCC
Confidence 46789988877 468999999998876521 122 1 1336888899999999999 4553 5999999
Q ss_pred hH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc-cCCCCCCCCHHHHHHHhhhcCCcEE
Q 023191 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR-LNESTGYIDYDQLEKSATLFRPKLI 199 (286)
Q Consensus 122 ~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~d~e~l~~~i~~~~tk~v 199 (286)
++ ++.+++.+++++||+|+++.+.|.++.. .+...|.+++.++++ ....++.+|++++++++++ +++|
T Consensus 99 ~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v 168 (391)
T 4dq6_A 99 VIPAISLLINELTKANDKIMIQEPVYSPFNS--------VVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLF 168 (391)
T ss_dssp HHHHHHHHHHHHSCTTCEEEECSSCCTHHHH--------HHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEE
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCCHHHHH--------HHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEE
Confidence 99 8887999999999999999966655432 444567666666543 2224567999999999976 8888
Q ss_pred EEc-CCC-CCCc---cCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-------cceEEEeCCCCCCC--CCCc
Q 023191 200 VAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-------YADVVTTTTHKSLR--GPRG 265 (286)
Q Consensus 200 ~i~-~~n-~g~~---~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-------~~D~v~~s~~K~l~--gp~g 265 (286)
+++ ++| +|.. .++++|+++|++||+++|+|++|+....... ....+. ...+++.|+||+++ |.+.
T Consensus 169 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~ 247 (391)
T 4dq6_A 169 ILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH-KHIPMASISKEFEKNTITCMAPTKTFNIAGLQS 247 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC-CCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCC
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC-CccCHHHcCccccCcEEEEEechhhccCcccce
Confidence 887 666 6665 5688999999999999999999875433211 111111 12388999999884 3445
Q ss_pred eEEEEec-chhhhhc
Q 023191 266 AMIFFRK-GVKEINK 279 (286)
Q Consensus 266 G~l~~~~-~~~~~~~ 279 (286)
|++++++ ++.+..+
T Consensus 248 G~~~~~~~~~~~~~~ 262 (391)
T 4dq6_A 248 SYVVLPDEKDYKLLD 262 (391)
T ss_dssp EEEECCSHHHHHHHH
T ss_pred EEEEeCCHHHHHHHH
Confidence 9999887 6665544
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.6e-21 Score=172.04 Aligned_cols=226 Identities=12% Similarity=0.097 Sum_probs=155.9
Q ss_pred cccChHHHHHHHHHHHHHH----c-------------CceecCCCC---CCCHHHHHHhccccccCCCCCCCCCc-ccCC
Q 023191 28 EVVDPEIADIIEHEKARQW----K-------------GLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGAR-YYGG 86 (286)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~----~-------------~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~-~~~~ 86 (286)
+.++++++..+........ + .+++..++. ..++.+++++.+.+.. |..++.... .++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~-~~~~~~~~~~~~g~ 102 (409)
T 3kki_A 24 PQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLE-EQQSLFMSASFLQN 102 (409)
T ss_dssp CCCCHHHHHHHHHHHHHHTTTSTTSSCTTCCCCCCTTSEECCCSCTTCCTTCHHHHHHHHHHHHS-CCCCCCSBGGGGCS
T ss_pred ccchHHHHHHHHHHHHHHhhhccCCCeeeeCCCCCCceEEeeccCccCCcCCHHHHHHHHHHHHH-cCCCCCccccccCC
Confidence 5578888888876543321 1 133333321 2579999999988865 322322221 2222
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
.....+ +++++++++|.+. .+++++|+.++.+++.+++++||.|+++++.|+++.. .+...|.
T Consensus 103 ~~~~~~----l~~~la~~~g~~~-----~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~ 165 (409)
T 3kki_A 103 DYDKPM----IEKRLAKFTGFDE-----CLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWE--------GARYANA 165 (409)
T ss_dssp TTTSCH----HHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHH--------HHHHTTC
T ss_pred cHHHHH----HHHHHHHHhCCCe-----EEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHH--------HHHHcCC
Confidence 222333 4577888888764 4888888778888999999999999999977666543 3345564
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCC--
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI-- 242 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-- 242 (286)
.+..+ + ..|+++|++++++.++++|+++ ++| +|...++++|.++|++||+++|+|++|+.|.....-.
T Consensus 166 ~~~~~--~------~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~ 237 (409)
T 3kki_A 166 QAHPF--M------HNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGL 237 (409)
T ss_dssp EEEEE--C------TTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH
T ss_pred eEEEe--c------CCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcc
Confidence 44333 2 2589999999987578999998 555 6788899999999999999999999998765421100
Q ss_pred --CCCC-CcceEEEeCCCCCCCCCCceEEEEecchhhhhcc
Q 023191 243 --PSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 243 --~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~~ 280 (286)
...+ ..+|+++.|++|+|+++ ||++++++++.+..++
T Consensus 238 ~~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~~~~~~~~~ 277 (409)
T 3kki_A 238 LAELGLTREVHFMTASLAKTFAYR-AGAIWCNNEVNRCVPF 277 (409)
T ss_dssp HHHHTCGGGCSEEEEESSSTTCSS-CEEEEESSSGGGTHHH
T ss_pred hhhcCCCCCCCEEEeecchhhCCC-ceEEEECHHHHHHHHH
Confidence 0111 13789999999999766 8999999988776553
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=176.93 Aligned_cols=207 Identities=20% Similarity=0.218 Sum_probs=147.2
Q ss_pred CceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcc-cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 48 GLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 48 ~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.++|..+.+ ..++.+.+++.+.+.. +..+++..++ ++..+... ++++++++++|.+. .|++++|+.
T Consensus 45 ~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~----~l~~~la~~~~~~~-----~i~~~sGt~ 114 (399)
T 3tqx_A 45 VLNFCANNYLGLADHPALIKTAQTVVEQ-YGFGMASVRFICGTQTIHK----ELEKDISEFLGTDD-----TILYSSCFD 114 (399)
T ss_dssp EEECSSCCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCCCCCCCBHHHH----HHHHHHHHHHTCSE-----EEEESCHHH
T ss_pred EEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCcCccccCchHHH----HHHHHHHHHHCCCc-----EEEECchHH
Confidence 477777754 2479999999888765 3223322222 22333334 45577888888753 589999977
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcE
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKL 198 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~ 198 (286)
++..++.+++++||.|++..+.|+++.. .+...|..+..++ . .|++++++.+++. ++++
T Consensus 115 a~~~~l~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~~~~~~~--~------~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 115 ANGGLFETLLGPEDAIISDELNHASIID--------GIRLCKAQRYRYK--N------NAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHH--------HHHSCCSEEEEEC--T------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred HHHHHHHHhcCCCCEEEECCcccHHHHH--------HHHHcCCceeEeC--C------CCHHHHHHHHHhhhccCCCceE
Confidence 7777889999999999999976666533 4455665554443 2 4677888888753 7889
Q ss_pred EEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC----CC-CCcceEEEeCCCCCCCCCCceEEEEe
Q 023191 199 IVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP----SP-FEYADVVTTTTHKSLRGPRGAMIFFR 271 (286)
Q Consensus 199 v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~----~~-~~~~D~v~~s~~K~l~gp~gG~l~~~ 271 (286)
|+++ ++| +|...|+++|.++|++||+++|+|++|+.|........ .. ....|++++|+||+|+|++||+++++
T Consensus 179 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~ 258 (399)
T 3tqx_A 179 IATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGH 258 (399)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEEC
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcC
Confidence 9987 445 67888999999999999999999999976654322110 11 12479999999999988999999999
Q ss_pred cchhhhhcc
Q 023191 272 KGVKEINKQ 280 (286)
Q Consensus 272 ~~~~~~~~~ 280 (286)
+++.+..++
T Consensus 259 ~~~~~~~~~ 267 (399)
T 3tqx_A 259 KEIIEWLRN 267 (399)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766553
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=167.93 Aligned_cols=201 Identities=14% Similarity=0.126 Sum_probs=144.2
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.|+|..++++ +++.+++++.+.+.... +|+ ..+..+++ +.+++++|++++ +|++|+|++
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~--~y~-------~~~~~~lr----~~la~~~~~~~~----~i~~t~G~~ 78 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAAAAARIN--RYP-------FDAEPRVM----RKLAEHFSCPED----NLMLVRGID 78 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHGGGTT--SCC-------TTHHHHHH----HHHHHHHTSCGG----GEEEESHHH
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHHhhhhhc--cCC-------CCchHHHH----HHHHHHhCcCHH----HEEEeCCHH
Confidence 467999999885 68999999988775411 232 23455555 667777888764 599999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.++ +||+|+++++.|.++ ...+...|.+++.++ .+ +++.+|++++++. . ++++++++
T Consensus 79 ~~l~~~~~~~--~gd~vl~~~p~~~~~--------~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~--~-~~~~v~i~ 142 (337)
T 3p1t_A 79 ECFDRISAEF--SSMRFVTAWPGFDGY--------RARIAVSGLRHFEIG--LT-DDLLLDPNDLAQV--S-RDDCVVLA 142 (337)
T ss_dssp HHHHHHHHHS--TTSEEEEESSSCSHH--------HHHHTTSCCEEEEEC--BC-TTSSBCHHHHTTC--C-TTEEEEEE
T ss_pred HHHHHHHHhc--CCCeEEEeCCCcHHH--------HHHHHHcCCEEEEec--CC-CCCCCCHHHHHhh--c-CCCEEEEe
Confidence 777666666 999999999655554 334456676665554 44 4678999999876 3 68898887
Q ss_pred -CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCC--CCCceEEEEecchhhhh
Q 023191 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLR--GPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~ 278 (286)
++| +|...|++++.++|+++++ +|+|++|.. ..............++++.|++|+|+ |.+.|++++++++.+..
T Consensus 143 ~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~-~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l 220 (337)
T 3p1t_A 143 NPSNPTGQALSAGELDQLRQRAGK-LLIDETYVD-YSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAM 220 (337)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGG-GSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChh-hccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHH
Confidence 767 7899999999999999997 566999763 22111111112246799999999884 55569999998877666
Q ss_pred ccC
Q 023191 279 KQG 281 (286)
Q Consensus 279 ~~~ 281 (286)
++.
T Consensus 221 ~~~ 223 (337)
T 3p1t_A 221 KRK 223 (337)
T ss_dssp HTT
T ss_pred Hhh
Confidence 543
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=171.38 Aligned_cols=207 Identities=14% Similarity=0.061 Sum_probs=146.7
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC-CCCCcceeEEeCCChH
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL-DPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~v~~~sG~~ 123 (286)
+.|+|..++++ +++.+++++.+.+.+....+|+. .+..+++ +.+++++|+ +++ +|++|+|++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-------~~~~~l~----~~la~~~g~~~~~----~i~~~~g~t 95 (367)
T 3euc_A 31 GLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-------PSSEALR----AKLKEVMQVPAGM----EVLLGNGSD 95 (367)
T ss_dssp TCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-------CCHHHHH----HHHHHHHTCCTTC----EEEEEEHHH
T ss_pred CeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-------CcHHHHH----HHHHHHhCCCCcc----eEEEcCCHH
Confidence 56999988885 68999999988776311112322 2344555 777777888 443 699999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.+++++||+|+++.+.|.++.. .+...|.+++.++ .+ +++.+|+++++++++++++++|+++
T Consensus 96 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 96 EIISMLALAAARPGAKVMAPVPGFVMYAM--------SAQFAGLEFVGVP--LR-ADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp HHHHHHHHHTCCTTCEEEEEESCSCCSCH--------HHHTTTCEEEEEE--CC-TTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCHHHHHH--------HHHHcCCeEEEec--CC-CCCCCCHHHHHHHhhccCCCEEEEc
Confidence 8887889999999999999966655432 3445676665555 44 4688999999999987689999997
Q ss_pred -CCC-CCCcc---CHHHHHHHHHhc--CCEEEEeccccccccccCCCCC-CCCcceEEEeCCCCCC-CCCCceEEEEecc
Q 023191 203 -ASA-YARLY---DYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPS-PFEYADVVTTTTHKSL-RGPRGAMIFFRKG 273 (286)
Q Consensus 203 -~~n-~g~~~---~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~-~~~~~D~v~~s~~K~l-~gp~gG~l~~~~~ 273 (286)
++| +|... ++++|+++|++| |+++|+|++|+... ....... ...+.++++.|+||+. .|.+.|+++++++
T Consensus 165 ~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~ 243 (367)
T 3euc_A 165 YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA-QESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQ 243 (367)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS-SCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHH
T ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc-ccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHH
Confidence 666 67654 577888889999 99999999976421 1111100 0012568899999982 2233499999888
Q ss_pred hhhhhcc
Q 023191 274 VKEINKQ 280 (286)
Q Consensus 274 ~~~~~~~ 280 (286)
+.+..++
T Consensus 244 ~~~~~~~ 250 (367)
T 3euc_A 244 WLEQLDK 250 (367)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 7766554
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-21 Score=171.24 Aligned_cols=226 Identities=14% Similarity=0.026 Sum_probs=154.4
Q ss_pred ChHHHHHHHHHHHHH---HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHC
Q 023191 31 DPEIADIIEHEKARQ---WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAF 105 (286)
Q Consensus 31 ~~~~~~~~~~~~~~~---~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (286)
+++.+..+.+..... .+.|+|..++++ +|+.+++++.+.+.... + |+...+..++++++.+++.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~------y~~~~g~~~lr~~la~~l~~~~ 76 (376)
T 3ezs_A 5 EPYPFERLRALLKEITPKKRGLDLGIGEPQFETPKFIQDALKNHTHSLN--I------YPKSAFEESLRAAQRGFFKRRF 76 (376)
T ss_dssp CCCHHHHHHHHHTTCCCSSCCCBCSSCCCCSCCCHHHHHHHHTTGGGGG--S------CCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHhhhccCCEEEeCCCCCCCCCCHHHHHHHHHhhhhcC--C------CCCCCCCHHHHHHHHHHHHHHh
Confidence 344455554433221 257899888874 58999999988773211 2 2333456789999999999988
Q ss_pred CCCCCCcceeEEeCCChH-HHHHHHHHhcCC--CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCC
Q 023191 106 RLDPEKWGVNVQSLSGSP-SNFQVYTALLKP--HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYI 182 (286)
Q Consensus 106 g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~--Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 182 (286)
|++.+. .+|++|+|++ ++.+++.+++++ ||+|+++.+.|.++. ..+...|.+++.+++ +.+ ..+
T Consensus 77 g~~~~~--~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~--------~~~~~~g~~~~~~~~--~~~-~~~ 143 (376)
T 3ezs_A 77 KIELKE--NELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYE--------GAAKFIKAKSLLMPL--TKE-NDF 143 (376)
T ss_dssp SCCCCG--GGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHH--------HHHHHTTCEEEEEEC--CGG-GTS
T ss_pred CCCCCH--HHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHH--------HHHHHcCCEEEEccc--CCC-CCc
Confidence 983221 3599999999 888799999999 999999996665543 244556766666654 322 223
Q ss_pred CHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC-C--------CCc
Q 023191 183 DYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-P--------FEY 248 (286)
Q Consensus 183 d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~-~--------~~~ 248 (286)
++ ++++.+.+ ++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+........... . ..+
T Consensus 144 ~~-~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (376)
T 3ezs_A 144 TP-SLNEKELQ-EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFK 221 (376)
T ss_dssp CC-CCCHHHHH-HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCT
T ss_pred ch-hHHhhhcc-CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccC
Confidence 33 66677776 89999997 666 666665 667888899999999999998754332211100 0 113
Q ss_pred ceEEEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 249 ADVVTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 249 ~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
.++++.|++|+++ |.+.|+++.++++.+..+
T Consensus 222 ~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~ 254 (376)
T 3ezs_A 222 NVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYK 254 (376)
T ss_dssp TEEEEEESTTTTTCGGGCCEEEEECHHHHHHHH
T ss_pred cEEEEecchhccCCccceeEEEeeCHHHHHHHH
Confidence 6799999999984 334499999888776655
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=175.21 Aligned_cols=202 Identities=15% Similarity=0.157 Sum_probs=136.8
Q ss_pred HHHHHHhcccccc-CCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEE---eCCChHHHHHHHHHhcCC
Q 023191 60 VSVMQAVGSVMTN-KYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQ---SLSGSPSNFQVYTALLKP 135 (286)
Q Consensus 60 ~~v~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~---~~sG~~a~~~~l~a~~~~ 135 (286)
..|++++.+.... .+. +......|+. .+..+ +++.+++++|.+. .++ +++|+.++.+++.++++|
T Consensus 32 ~~vl~a~~~~~~~~~~~-~~~~~~~y~~-~~~~~----Le~~lA~l~g~e~-----alv~p~~~sGt~Ai~~al~all~~ 100 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHF-HPSTGYGYDD-EGRDT----LERVYATVFKTEA-----ALVRPQIISGTHAISTVLFGILRP 100 (409)
T ss_dssp HHHHHHHHHTTCCGGGG-CCCCTTCTTC-HHHHH----HHHHHHHHHTCSE-----EEEETTSCSHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhhhhhhcc-CCCcCCCCCh-hHHHH----HHHHHHHHhCCCc-----EEEECCCccHHHHHHHHHHHhcCC
Confidence 6678888765421 111 1111111222 23334 4478889999865 244 456655888899999999
Q ss_pred CCeEEecc-CCCCcccCcccc--ccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcC----CC--C
Q 023191 136 HDRIMALD-LPHGGHLSHGYQ--TDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA----SA--Y 206 (286)
Q Consensus 136 Gd~Vl~~~-~~~~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~----~n--~ 206 (286)
||+|++++ +.|.++....-. .....+...|..++.+ +.+ +++.+|++++++++++ +||+|+++. ++ +
T Consensus 101 GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v--~~~-~~g~~d~e~l~~ai~~-~tklV~i~~s~g~p~npt 176 (409)
T 3jzl_A 101 DDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSV--PLL-ENGDVDFPRIAKKMTP-KTKMIGIQRSRGYADRPS 176 (409)
T ss_dssp TCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEEC--CCC-TTSCCCHHHHHHHCCT-TEEEEEEECSCTTSSSCC
T ss_pred CCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEe--CCC-CCCCcCHHHHHHhccC-CCeEEEEECCCCCCCCCc
Confidence 99999998 777665421100 0001223345555444 444 4688999999999987 899999864 44 5
Q ss_pred CCccCHHHHHHHHHh--cCCEEEEeccccccccccCCCCCCCC-cceEEEeCCCCCCCC---CCceEEEEecchhhhhcc
Q 023191 207 ARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPFE-YADVVTTTTHKSLRG---PRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 207 g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s~~K~l~g---p~gG~l~~~~~~~~~~~~ 280 (286)
|...++++|+++|++ ||+++++|++|+.+.... .+.. ++|++++|+||+++| +.||++++++++.+..++
T Consensus 177 g~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~----~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~ 252 (409)
T 3jzl_A 177 FTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQ----EPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGY 252 (409)
T ss_dssp CCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSC----CSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHH
T ss_pred CccccHHHHHHHHHhhCCCCEEEEeCCcccccccC----CccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHH
Confidence 688899999999999 999999999987654321 1222 589999999999977 457999999887766653
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=174.33 Aligned_cols=206 Identities=15% Similarity=0.104 Sum_probs=149.1
Q ss_pred cCceecCCCC-C--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 47 KGLELIPSEN-F--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~-~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
+.++|..+++ . +++.+++++.+.+.... .++.. |....+..++++++++++++++|.+ ++++++|++
T Consensus 44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~---~~~~~g~~~~~~~l~~~la~~~g~~------~v~~~~ggt 113 (398)
T 3a2b_A 44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKYG-TGCAG---SRFLNGTLDIHVELEEKLSAYVGKE------AAILFSTGF 113 (398)
T ss_dssp EEEECSCSCTTCGGGCHHHHHHHHHHHHHHC-SCCCS---BTTTTCCCHHHHHHHHHHHHHHTCS------EEEEESSHH
T ss_pred eEEEeecccccCCCCCHHHHHHHHHHHHHcC-CCCCC---cCcccCCcHHHHHHHHHHHHHhCCC------cEEEECCHH
Confidence 4678888865 2 68999999988775421 12211 1222334467777889999999874 388888888
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc---CCcEE
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF---RPKLI 199 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~---~tk~v 199 (286)
++..++.+++++||.|+++++.|+++.. .+...|.+++.++ . +|++++++.+++. ++++|
T Consensus 114 ~a~~~~~~~~~~~gd~V~~~~p~~~~~~~--------~~~~~g~~~~~v~--~------~d~~~l~~~l~~~~~~~~~~v 177 (398)
T 3a2b_A 114 QSNLGPLSCLMGRNDYILLDERDHASIID--------GSRLSFSKVIKYG--H------NNMEDLRAKLSRLPEDSAKLI 177 (398)
T ss_dssp HHHHHHHHHSSCTTCEEEEETTCCHHHHH--------HHHHSSSEEEEEC--T------TCHHHHHHHHHTSCSSSCEEE
T ss_pred HHHHHHHHHHhCCCCEEEECCccCHHHHH--------HHHHcCCceEEeC--C------CCHHHHHHHHHhhccCCceEE
Confidence 8888999999999999999966665543 3445665554443 2 5899999999764 68898
Q ss_pred EEc-CCC-CCCccCHHHHHHHHHhcCCEEEEecccccccccc-CCC--C-CCCC-cceEEEeCCCCCCCCCCceEEEEec
Q 023191 200 VAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA-GVI--P-SPFE-YADVVTTTTHKSLRGPRGAMIFFRK 272 (286)
Q Consensus 200 ~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~-~~~--~-~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (286)
+++ ++| +|...++++|.++|++||+++|+|++|+.+.... +.. . ..+. .+|++++|+||+|+ |.||++++++
T Consensus 178 ~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~ 256 (398)
T 3a2b_A 178 CTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDA 256 (398)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECH
T ss_pred EEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCH
Confidence 887 555 6788899999999999999999999998664421 110 0 0111 26999999999886 6669999998
Q ss_pred chhhhhc
Q 023191 273 GVKEINK 279 (286)
Q Consensus 273 ~~~~~~~ 279 (286)
++.+..+
T Consensus 257 ~~~~~l~ 263 (398)
T 3a2b_A 257 DVIDFLK 263 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766554
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=172.76 Aligned_cols=207 Identities=15% Similarity=0.128 Sum_probs=147.4
Q ss_pred CceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcc-cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 48 GLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 48 ~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.++|..+++ ..++.+++++.+.+.. +..++++.+. ++.. ....++++.+++++|.+. .+++++|+.
T Consensus 66 ~id~~~~~~lg~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~G~~----~~~~~l~~~la~~~g~~~-----~i~~~sGs~ 135 (427)
T 2w8t_A 66 TILLGTYNYMGMTFDPDVIAAGKEALEK-FGSGTCGSRMLNGTF----HDHMEVEQALRDFYGTTG-----AIVFSTGYM 135 (427)
T ss_dssp EEECSCCCTTCGGGCHHHHHHHHHHHHH-HCSCCCSCTTTTCCC----HHHHHHHHHHHHHHTCSE-----EEEESCHHH
T ss_pred EEEEECcccccCCCCHHHHHHHHHHHHH-hCCCCcccccccCCc----HHHHHHHHHHHHHhCCCc-----eEEecCcHH
Confidence 357777764 3689999999888765 2223332221 2222 333445577888888752 588888888
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc---CCcEEE
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF---RPKLIV 200 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~---~tk~v~ 200 (286)
++..++.+++++||.|++..+.|.++.. .+...|.+++.++ ..|+++|++++++. ++++|+
T Consensus 136 a~~~al~~l~~~gd~vl~~~~~h~~~~~--------~~~~~g~~~~~~~--------~~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 136 ANLGIISTLAGKGEYVILDADSHASIYD--------GCQQGNAEIVRFR--------HNSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp HHHHHHHHHSCTTCEEEEETTCCHHHHH--------HHHHSCSEEEEEC--------TTCHHHHHHHHHTSCSSSCEEEE
T ss_pred HHHHHHHHhcCCCCEEEECCcccHHHHH--------HHHHcCCeeEEeC--------CCCHHHHHHHHHhccCCCCeEEE
Confidence 8887889999999999999977766543 3445565544332 25899999999764 688998
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC----CCC-CcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP----SPF-EYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~----~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
++ +.| +|...|+++|.++|++||+++|+|++|+.+........ ..+ .++|++++|+||+|+ +.||+++++++
T Consensus 200 ~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g-~~gG~v~~~~~ 278 (427)
T 2w8t_A 200 LEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG-TVGGFVVSNHP 278 (427)
T ss_dssp EESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC-SCCEEEEECCT
T ss_pred EcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc-cCCCEEEeCHH
Confidence 87 434 67888999999999999999999999988765411000 111 147999999999985 77899999998
Q ss_pred hhhhhccC
Q 023191 274 VKEINKQG 281 (286)
Q Consensus 274 ~~~~~~~~ 281 (286)
+.+.++..
T Consensus 279 l~~~l~~~ 286 (427)
T 2w8t_A 279 KFEAVRLA 286 (427)
T ss_dssp TGGGGGGT
T ss_pred HHHHHHHh
Confidence 88776643
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=177.79 Aligned_cols=174 Identities=14% Similarity=0.113 Sum_probs=134.8
Q ss_pred CCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc-------C-CCC------eEEeccCCCCcc
Q 023191 85 GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL-------K-PHD------RIMALDLPHGGH 149 (286)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~-------~-~Gd------~Vl~~~~~~~~~ 149 (286)
...+...++++++++++++++|.+.+ ++++++|++ +++.++.++. + +|| .|++++..|.++
T Consensus 141 ~~s~~~~~le~~~~~~la~l~g~~~~----~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~ 216 (515)
T 2jis_A 141 EIAPVFVLMEEEVLRKLRALVGWSSG----DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSI 216 (515)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCSSC----EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred hhchHHHHHHHHHHHHHHHHhCCCCC----CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHH
Confidence 44466788999999999999999743 589999988 8776766652 2 576 788888777776
Q ss_pred cCcccccccccccccee---eeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc-CCC-CCCccCHHHHHHHH
Q 023191 150 LSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG-ASA-YARLYDYERIRKVC 219 (286)
Q Consensus 150 ~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~-~~n-~g~~~~l~~I~~ia 219 (286)
.... ...|. .++.+| .+ +++.+|+++|++++++. +|++|+++ ++| +|.+.|+++|+++|
T Consensus 217 ~~~~--------~~~g~g~~~v~~v~--~~-~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la 285 (515)
T 2jis_A 217 QKGA--------AFLGLGTDSVRVVK--AD-ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVC 285 (515)
T ss_dssp HHHH--------HHTTSCGGGEEEEC--BC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHH
T ss_pred HHHH--------HHcCCCCCcEEEEe--cC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHH
Confidence 5432 23333 455565 44 46899999999999763 48888887 656 78899999999999
Q ss_pred HhcCCEEEEeccccccccccCCCCC---CCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 220 NKQKAIMLADMAHISGLVAAGVIPS---PFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 220 ~~~~~~vivD~a~~~g~~~~~~~~~---~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
++||+++|+|++|+.+....+.... .+.++|++++++|||+++|.| |+++++++
T Consensus 286 ~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~ 343 (515)
T 2jis_A 286 QRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDT 343 (515)
T ss_dssp HHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCC
T ss_pred HHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeCh
Confidence 9999999999999888776442221 223589999999999999998 99999987
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.1e-21 Score=171.16 Aligned_cols=187 Identities=12% Similarity=0.132 Sum_probs=138.0
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-cCCCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHD 137 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~~~Gd 137 (286)
++++++++.+.+.... .+ |.......+++ +.+++++|.+. .|++++|+.++.+++.++ +++||
T Consensus 16 ~~~~~~a~~~~l~~~~-~~------~~~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~al~~~l~~l~~~~gd 79 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQ-WW------RMGGDEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPGT 79 (388)
T ss_dssp CHHHHHHHHHHHHTSC-CB------TTTCSHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTTC
T ss_pred CHHHHHHHHHHHHcCC-ee------ecCCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCcC
Confidence 4899999988886521 01 22234455555 77778888762 599999955888799999 89999
Q ss_pred eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCccCHHHHH
Q 023191 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIR 216 (286)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g~~~~l~~I~ 216 (286)
+|+++.+.|.++.. .+...|.+++.++ ++++++.+|+++|++++++ ++++|+ ++| +|...++++|.
T Consensus 80 ~Vi~~~~~~~~~~~--------~~~~~g~~~~~v~--~~~~~~~~d~~~l~~~i~~-~~~~v~--~~n~tG~~~~l~~i~ 146 (388)
T 1b9h_A 80 EVIVPAFTFISSSQ--------AAQRLGAVTVPVD--VDAATYNLDPEAVAAAVTP-RTKVIM--PVHMAGLMADMDALA 146 (388)
T ss_dssp EEEEESSSCTHHHH--------HHHHTTCEEEEEC--BCTTTCCBCHHHHHHHCCT-TEEEEC--CBCGGGCCCCHHHHH
T ss_pred EEEECCCccHHHHH--------HHHHcCCEEEEEe--cCCCcCCCCHHHHHHhcCc-CceEEE--EeCCccCcCCHHHHH
Confidence 99999977777643 3345665555554 5544588999999999987 888877 555 78889999999
Q ss_pred HHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEecc-h
Q 023191 217 KVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG-V 274 (286)
Q Consensus 217 ~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~-~ 274 (286)
++|++||+++|+|++|+.|....+.....+..+++..+|.||+++|++||+++++++ +
T Consensus 147 ~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~~~ 205 (388)
T 1b9h_A 147 KISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGET 205 (388)
T ss_dssp HHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCH
T ss_pred HHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCHHH
Confidence 999999999999999988765432211111125566667789998888999999876 5
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=174.68 Aligned_cols=196 Identities=16% Similarity=0.157 Sum_probs=139.5
Q ss_pred HcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHH
Q 023191 46 WKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSN 125 (286)
Q Consensus 46 ~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~ 125 (286)
.+.++|..+.+..++.+++++.+.+...+ |. ....+..+++ +.+++++|.+. .+++++|+.++
T Consensus 22 ~~~~~l~~~~p~~~~~~~~a~~~~~~~~~---~~-----~~~~~~~~l~----~~la~~~~~~~-----~i~~~~gt~al 84 (391)
T 3dr4_A 22 SDLPRISVAAPRLDGNERDYVLECMDTTW---IS-----SVGRFIVEFE----KAFADYCGVKH-----AIACNNGTTAL 84 (391)
T ss_dssp ------CCCCCCCCSSHHHHHHHHHHHTC---CS-----SCSHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHH
T ss_pred CCCceeccCCCCCCHHHHHHHHHHHHcCC---cc-----CCChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHH
Confidence 35678888888888999999988776522 11 1234555555 67777778763 35555555588
Q ss_pred HHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 023191 126 FQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS 204 (286)
Q Consensus 126 ~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~ 204 (286)
.+++.++ +++||+|+++++.|.++.. .+...|.+++.++ .+++++.+|++++++++++ ++++|++ +
T Consensus 85 ~~~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~--~~~~~~~~d~~~l~~~~~~-~~~~v~~--~ 151 (391)
T 3dr4_A 85 HLALVAMGIGPGDEVIVPSLTYIASAN--------SVTYCGATPVLVD--NDPRTFNLDAAKLEALITP-RTKAIMP--V 151 (391)
T ss_dssp HHHHHHHTCCTTCEEEEESSSCTHHHH--------HHHHTTCEEEEEC--BCTTTCSBCGGGSGGGCCT-TEEEECC--B
T ss_pred HHHHHHcCCCCcCEEEECCCchHHHHH--------HHHHCCCEEEEEe--cCccccCcCHHHHHHhcCC-CceEEEE--E
Confidence 8789999 9999999999977766643 3345565555554 5545689999999999987 8888875 3
Q ss_pred C-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeC--CCCCCCCCCceEEEEecc
Q 023191 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTT--THKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 205 n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s--~~K~l~gp~gG~l~~~~~ 273 (286)
| +|...++++|.++|+++|+++|+|++|+.|....+.....+ .|++++| .||+++|++||+++++++
T Consensus 152 n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~--~di~~~S~s~~K~l~~g~gg~~~~~~~ 221 (391)
T 3dr4_A 152 HLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL--GDCATFSFFGNAIITTGEGGMITTNDD 221 (391)
T ss_dssp CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS--SSEEEEECBTTSSSCCBSCEEEEESCH
T ss_pred CCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeeccc--CCEEEEECCCCCcCCcCCeEEEEECCH
Confidence 4 67889999999999999999999999998876544322222 3555555 779998888899888764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=173.71 Aligned_cols=212 Identities=13% Similarity=0.169 Sum_probs=150.1
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEeCCCh
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~~sG~ 122 (286)
+.++|..+++ ++++.+.+++.+.+.+.. .+| +.. ..++++++.+++++.+|. +++ +|++|+|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y------~~~--~~~l~~~la~~l~~~~g~~~~~~----~v~~t~g~ 98 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDETV-LGY------TGP--TEEYKKTVKKWMKDRHQWDIQTD----WIINTAGV 98 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-CSS------BCC--CHHHHHHHHHHHHHHHCCCCCGG----GEEEESSH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcCC-CCC------CCC--cHHHHHHHHHHHHHHhCCCCChh----hEEEcCCH
Confidence 5788988877 358899999988775311 122 221 578888898999888884 443 59999999
Q ss_pred H-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 123 ~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
+ ++.+++.+++++||+|+++.+.|.++.. .+...|.+++.+++..+..++.+|+++|++.+++.++++|++
T Consensus 99 ~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 99 VPAVFNAVREFTKPGDGVIIITPVYYPFFM--------AIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSSCCTHHHH--------HHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 8 8888999999999999999966655432 344556555555432111135699999999998338899988
Q ss_pred c-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCC--CCCC----cceEEEeCCCCCCC--CCCceEE
Q 023191 202 G-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPFE----YADVVTTTTHKSLR--GPRGAMI 268 (286)
Q Consensus 202 ~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~--~~~~----~~D~v~~s~~K~l~--gp~gG~l 268 (286)
+ ++| +|...+ +++|+++|++||+++|+|++|+.......... ..+. ..++++.|++|+|+ |.+.|++
T Consensus 171 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 250 (399)
T 1c7n_A 171 CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNI 250 (399)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEE
T ss_pred cCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEE
Confidence 7 666 677777 99999999999999999999876433211110 0111 24688999999884 3345999
Q ss_pred EEec-chhhhhc
Q 023191 269 FFRK-GVKEINK 279 (286)
Q Consensus 269 ~~~~-~~~~~~~ 279 (286)
++++ ++.+..+
T Consensus 251 ~~~~~~~~~~l~ 262 (399)
T 1c7n_A 251 IIKNPDIRERFT 262 (399)
T ss_dssp ECCCHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 9975 4665544
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-21 Score=171.86 Aligned_cols=195 Identities=10% Similarity=0.090 Sum_probs=135.4
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHH-HHHCCCCCCCcceeEEeCCChHHHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA-LEAFRLDPEKWGVNVQSLSGSPSNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~g~~~~~~~~~v~~~sG~~a~~~ 127 (286)
|.+...+-++++++++++.+.+.+.+ +. .......++| +.+ ++++|... . .|.+++|+.++.+
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~~~---~~-----~~~~~~~~l~----~~~~a~~~g~~~-~---~v~~~sgt~al~~ 68 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDASHI---YT-----NYGPINQRFE----QTIMSGFFQNRG-A---VTTVANATLGLMA 68 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHHTC---CS-----SSCHHHHHHH----HHHHHHTSTTCS-E---EEEESCHHHHHHH
T ss_pred eeccCCCCCCcHHHHHHHHHHHHcCC---cc-----cCCHHHHHHH----HHHHHHHhCCCC-e---EEEeCCHHHHHHH
Confidence 55544444567888999988887633 10 1123445555 777 88888322 1 3555555557777
Q ss_pred HHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHh-hhcC--CcEEEEcC
Q 023191 128 VYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA-TLFR--PKLIVAGA 203 (286)
Q Consensus 128 ~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i-~~~~--tk~v~i~~ 203 (286)
++.++ ++|||+|+++++.|.++.. .+...|.+++.++ ++++++.+|++++++++ ++ + ||+|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~~~--------~~~~~G~~~~~v~--~~~~~~~~d~~~l~~~i~~~-~~~tk~v~~-- 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPATPL--------AAIWCGLEPYFID--ISIDDWYMDKTVLWDKIEEL-KEEVAIVVP-- 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHHHH--------HHHHTTCEEEEEC--BCTTTCSBCHHHHHHHHHHH-GGGEEEECC--
T ss_pred HHHHcCCCCcCEEEECCCCcHHHHH--------HHHHcCCEEEEEe--cCCccCCcCHHHHHHHHhcC-CCCceEEEE--
Confidence 88888 9999999999977776543 3345676565554 55567899999999988 55 6 888874
Q ss_pred CC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC-CCCCcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 204 SA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 204 ~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
.| +|...++++|.++|+ ||++||+|++|+.|....+... ..+...++..++.||+++++.||+++++++
T Consensus 136 ~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~ 206 (377)
T 3ju7_A 136 YATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNE 206 (377)
T ss_dssp BCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCH
T ss_pred ECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCH
Confidence 33 688889999999999 9999999999998876433222 111123344555789998877799988763
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-21 Score=174.64 Aligned_cols=204 Identities=16% Similarity=0.095 Sum_probs=143.1
Q ss_pred cCceecCCCC------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC--CCCCCcceeEEe
Q 023191 47 KGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNVQS 118 (286)
Q Consensus 47 ~~i~L~~~e~------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g--~~~~~~~~~v~~ 118 (286)
+.|+|..|.+ ++++.+++++.+.+......+ |+...+..++++++.+++.+. + ++++ +|++
T Consensus 55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~lr~~la~~~~~~-~~~~~~~----~v~~ 123 (427)
T 3dyd_A 55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNG------YAPSIGFLSSREEIASYYHCP-EAPLEAK----DVIL 123 (427)
T ss_dssp CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSS------CCCTTCCHHHHHHHHHHHCBT-TBCCCGG----GEEE
T ss_pred CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCC------CCCCCCcHHHHHHHHHHHhhc-CCCCChH----HEEE
Confidence 4589987764 578999999998876522112 333455667775555554332 2 3443 5999
Q ss_pred CCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCc
Q 023191 119 LSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 197 (286)
Q Consensus 119 ~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk 197 (286)
|+|++ ++.+++.++++|||+|+++++.|.++ ...+...|.+++.+++..+ +++.+|++++++.+++ +++
T Consensus 124 t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~--------~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~-~~~ 193 (427)
T 3dyd_A 124 TSGCSQAIDLCLAVLANPGQNILVPRPGFSLY--------KTLAESMGIEVKLYNLLPE-KSWEIDLKQLEYLIDE-KTA 193 (427)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTHH--------HHHHHHTTCEEEEEEEEGG-GTTEECHHHHHSSCCT-TEE
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEcCCCchhH--------HHHHHHcCCEEEEEecccc-cCCCCCHHHHHHHhcc-CCC
Confidence 99999 88889999999999999999555443 3345566766666665322 4678999999999987 788
Q ss_pred EEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--c---ceEEEeCCCCCCCCC--Cc
Q 023191 198 LIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--Y---ADVVTTTTHKSLRGP--RG 265 (286)
Q Consensus 198 ~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~---~D~v~~s~~K~l~gp--~g 265 (286)
+|+++ ++| +|...+ +++|+++|+++|+++|+|++|.......... ..+. . ..+++.|++|.|+.| +.
T Consensus 194 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~-~~~~~~~~~~~vi~~~S~sK~~~~~G~ri 272 (427)
T 3dyd_A 194 CLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKY-EPLATLSTDVPILSCGGLAKRWLVPGWRL 272 (427)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCC-CCGGGGCSSCCEEEEEESTTTSSCGGGCC
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcC-ccHHHhCCCCcEEEEeeccccCCCcCcce
Confidence 88887 766 777778 9999999999999999999976533221111 1111 1 236688999986443 45
Q ss_pred eEEEEec
Q 023191 266 AMIFFRK 272 (286)
Q Consensus 266 G~l~~~~ 272 (286)
|++++++
T Consensus 273 G~~~~~~ 279 (427)
T 3dyd_A 273 GWILIHD 279 (427)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9999985
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-21 Score=174.82 Aligned_cols=245 Identities=13% Similarity=0.085 Sum_probs=158.5
Q ss_pred chhhccccccccChHHHHHHHHHHHHH-HcCceecCCCCCC--CHHHHHHhccccccCCC-----CCCCCCcccCCcchH
Q 023191 19 WPKQLNAPLEVVDPEIADIIEHEKARQ-WKGLELIPSENFT--SVSVMQAVGSVMTNKYS-----EGYPGARYYGGNEYI 90 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~L~~~e~~~--~~~v~~a~~~~l~~~~~-----~~~~~~~~~~~~~~~ 90 (286)
++++++++++.+.+..+..+.+..... .+.++|..|.+.. +|. ..+...+..... ........|+...+.
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~ 80 (425)
T 2r2n_A 3 YARFITAASAARNPSPIRTMTDILSRGPKSMISLAGGLPNPNMFPF--KTAVITVENGKTIQFGEEMMKRALQYSPSAGI 80 (425)
T ss_dssp GGGGSCHHHHTCCCCSGGGHHHHHHHSCTTCEECCCCCCCGGGCSE--EEEEEEETTSCCEEECHHHHHHHTSCCCTTCC
T ss_pred hhHHHHHHHhcCCCchHHHHHHHhhcCCCCeEEcCCcCCCchhCCH--HHHHHHHhhcccccccccchhhhcCCCCCCCC
Confidence 445666667667666666666654332 4678998887632 121 111111110000 000000113444666
Q ss_pred HHHHHHHHHHHHHHCCCCCC-------CcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccc
Q 023191 91 DMAESLCQKRALEAFRLDPE-------KWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS 162 (286)
Q Consensus 91 ~~l~~~~~~~~~~~~g~~~~-------~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (286)
.++++++.+++++.+|++.+ . .+|++|+|++ ++.+++.++++|||+|++++|.|.++ ...+.
T Consensus 81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~--~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~--------~~~~~ 150 (425)
T 2r2n_A 81 PELLSWLKQLQIKLHNPPTIHYPPSQGQ--MDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGT--------LQSLH 150 (425)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTSCGGGTC--EEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHH--------HHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCc--CcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHH--------HHHHH
Confidence 78999999999998998641 1 2699999999 88879999999999999999555443 33455
Q ss_pred cceeeeEEEecccCCCCCCCCHHHHHHHhhh-----------cCCcEEEE-c-CCC-CCCccCHH---HHHHHHHhcCCE
Q 023191 163 AVSIFFETMPYRLNESTGYIDYDQLEKSATL-----------FRPKLIVA-G-ASA-YARLYDYE---RIRKVCNKQKAI 225 (286)
Q Consensus 163 ~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-----------~~tk~v~i-~-~~n-~g~~~~l~---~I~~ia~~~~~~ 225 (286)
..|.+++.++ .+ + ..+|+++|++.++. .++++|++ + ++| +|...+.+ +|+++|++||++
T Consensus 151 ~~g~~~~~v~--~~-~-~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~ 226 (425)
T 2r2n_A 151 PLGCNIINVA--SD-E-SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFL 226 (425)
T ss_dssp GGTCEEEEEC--EE-T-TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred HcCCEEEEeC--cC-C-CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 6776666565 44 2 24899999999872 26898877 3 566 67666644 999999999999
Q ss_pred EEEeccccccccccCCCCC--CC--CcceEEEeCCCCCCC-CCCceEEEEecchhhhhc
Q 023191 226 MLADMAHISGLVAAGVIPS--PF--EYADVVTTTTHKSLR-GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 226 vivD~a~~~g~~~~~~~~~--~~--~~~D~v~~s~~K~l~-gp~gG~l~~~~~~~~~~~ 279 (286)
+|+|++|+........... .+ .+.++++.|++|+|+ |.+.|++++++++.+..+
T Consensus 227 li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~ 285 (425)
T 2r2n_A 227 IIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVI 285 (425)
T ss_dssp EEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHH
T ss_pred EEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHH
Confidence 9999998743222111111 01 135688999999985 223499999988766554
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=175.75 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=153.5
Q ss_pred HcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|..+++ ++++.+++++.+.+.+.. .+|+. ...++++++++++++.+|.+.+. .+|++++|++
T Consensus 61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~--------~~~~l~~~l~~~l~~~~g~~~~~--~~v~~~~g~~ 129 (421)
T 3l8a_A 61 PELLQMWVADMDFLPVPEIKEAIINYGREHI-FGYNY--------FNDDLYQAVIDWERKEHDYAVVK--EDILFIDGVV 129 (421)
T ss_dssp TTCEECCSSCCCSCCCHHHHHHHHHHHHHCC-SSCBC--------CCHHHHHHHHHHHHHHHCCCCCG--GGEEEESCHH
T ss_pred CCeeecccCCCCCCCCHHHHHHHHHHHhcCC-cCCCC--------CCHHHHHHHHHHHHHHhCCCCCH--HHEEEcCCHH
Confidence 36788887766 368999999988876421 12221 12688889999999999843222 3599999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.+++++||+|+++.+.|.++.. .+...|.++..+|+.....++.+|+++|++++++.++++|+++
T Consensus 130 ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~ 201 (421)
T 3l8a_A 130 PAISIALQAFSEKGDAVLINSPVYYPFAR--------TIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLC 201 (421)
T ss_dssp HHHHHHHHHHSCTEEEEEEEESCCHHHHH--------HHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEECCCCcHHHHH--------HHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEEC
Confidence 9888999999999999999966655432 4445676666666542224567899999999984489999987
Q ss_pred -CCC-CCCc---cCHHHHHHHHHhcCCEEEEeccccccccccCCC----CCC--CCcceEEEeCCCCCCC--CCCceEEE
Q 023191 203 -ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVI----PSP--FEYADVVTTTTHKSLR--GPRGAMIF 269 (286)
Q Consensus 203 -~~n-~g~~---~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~----~~~--~~~~D~v~~s~~K~l~--gp~gG~l~ 269 (286)
++| +|.. .++++|+++|++||+++|+|++|+......... ... ....++++.|++|+|+ |.+.|+++
T Consensus 202 ~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~ 281 (421)
T 3l8a_A 202 SPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAI 281 (421)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEE
Confidence 666 6655 568999999999999999999986433221111 111 0125588999999885 33449999
Q ss_pred Ee-cchhhhhc
Q 023191 270 FR-KGVKEINK 279 (286)
Q Consensus 270 ~~-~~~~~~~~ 279 (286)
++ +++.+..+
T Consensus 282 ~~~~~l~~~~~ 292 (421)
T 3l8a_A 282 IQNESLRRKFQ 292 (421)
T ss_dssp CCSHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 98 56666554
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=179.60 Aligned_cols=202 Identities=17% Similarity=0.114 Sum_probs=148.2
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~-- 134 (286)
.++.+.+++.+.+..... .+ ...+....+..++++++++++++++|++.+. .++++++|++ ++.+++.++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~--~~~~~~~ggt~a~~~a~~a~~~~~ 150 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCV-AN--QLHPDVFPAVRKMESEVVSMVLRMFNAPSDT--GCGTTTSGGTESLLLACLSAKMYA 150 (497)
T ss_dssp CCHHHHHHHHHHHHHTSS-CB--TTCTTTCHHHHHHHHHHHHHHHHHTTCCTTT--CCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhh-cC--CCCcccChHHHHHHHHHHHHHHHHhCCCCCC--CeEEEcCcHHHHHHHHHHHHHHHH
Confidence 357777777766644111 11 1113445677899999999999999997211 2588889988 88878888765
Q ss_pred ---CC---CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-C
Q 023191 135 ---PH---DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-Y 206 (286)
Q Consensus 135 ---~G---d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~ 206 (286)
+| |+|+++.+.|.++.. .+...|.+++.++ .+.+++.+|+++|++++++ +|++|+++ ++| +
T Consensus 151 ~~~~g~~~~~Vi~~~~~h~~~~~--------~~~~~G~~~~~v~--~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~npt 219 (497)
T 3mc6_A 151 LHHRGITEPEIIAPVTAHAGFDK--------AAYYFGMKLRHVE--LDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPH 219 (497)
T ss_dssp HHHSCCSSCEEEEETTSCHHHHH--------HHHHSCCEEEEEC--BCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTT
T ss_pred HhcCCCCCceEEEeCCccHHHHH--------HHHHcCCeEEEEe--cCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCC
Confidence 56 899999966665433 4556677676665 4433689999999999987 89999998 555 7
Q ss_pred CCccCHHHHHHHHHhcCCEEEEeccccccccc----cC---C--CCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchh
Q 023191 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVA----AG---V--IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (286)
Q Consensus 207 g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~----~~---~--~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (286)
|...|+++|+++|++||+++|+|++|+.+... .+ . ......++|++++++||++++|.+ |+++++++..
T Consensus 220 G~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~ 298 (497)
T 3mc6_A 220 GIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDL 298 (497)
T ss_dssp CCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHH
T ss_pred CcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHH
Confidence 78899999999999999999999998855443 01 1 111123699999999999888877 9999987643
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-21 Score=170.76 Aligned_cols=213 Identities=10% Similarity=0.054 Sum_probs=148.2
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHH-HHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM-AESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
+.++|..+++ .+++.+.+++.+.+.... .+|+ .. ..+ +++++.+++.+.+|.+.+. .+|++|+|++
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~------~~--~~~~lr~~la~~l~~~~g~~~~~--~~v~~t~g~~ 97 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHGV-FGYS------RW--KNDEFLAAIAHWFSTQHYTAIDS--QTVVYGPSVI 97 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTCC-CCCC------CS--CCHHHHHHHHHHHHHHSCCCCCG--GGEEEESCHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCCC-CCCC------CC--ChHHHHHHHHHHHHHhcCCCCCH--HHEEEcCCHH
Confidence 5788887776 368999999988775411 1232 21 346 8888999999888843221 3599999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.+++++||+|+++.+.|.++. ..+...|.+++.++++.+..++.+|+++|++++++.++++|+++
T Consensus 98 ~al~~~~~~l~~~gd~vl~~~p~y~~~~--------~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~ 169 (390)
T 1d2f_A 98 YMVSELIRQWSETGEGVVIHTPAYDAFY--------KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC 169 (390)
T ss_dssp HHHHHHHHHSSCTTCEEEEEESCCHHHH--------HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHHHH--------HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEe
Confidence 888799999999999999996655543 24445666666665432211356899999999975578999887
Q ss_pred -CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CCC-c-ceEEEeCCCCCCC--CCCceEEEEe
Q 023191 203 -ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFE-Y-ADVVTTTTHKSLR--GPRGAMIFFR 271 (286)
Q Consensus 203 -~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~-~-~D~v~~s~~K~l~--gp~gG~l~~~ 271 (286)
++| +|...+ +++|+++|++||+++|+|++|+........... .+. . .|. +.|++|+|+ |.+.|+++++
T Consensus 170 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~ 248 (390)
T 1d2f_A 170 SPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIE 248 (390)
T ss_dssp SSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEEC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEEC
Confidence 666 666655 889999999999999999998764432111111 111 1 277 999999884 3345999986
Q ss_pred -cchhhhhc
Q 023191 272 -KGVKEINK 279 (286)
Q Consensus 272 -~~~~~~~~ 279 (286)
+++.+..+
T Consensus 249 ~~~~~~~~~ 257 (390)
T 1d2f_A 249 NSSSRDAYL 257 (390)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 46655443
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=169.35 Aligned_cols=194 Identities=15% Similarity=0.201 Sum_probs=139.9
Q ss_pred CCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-
Q 023191 55 ENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL- 132 (286)
Q Consensus 55 e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~- 132 (286)
.+..++++++++.+.+.+.|. .. ......+++ +.+++++|.+ +|++++|++ ++.+++.++
T Consensus 7 ~p~~~~~v~~a~~~~~~~~~~----~~----~g~~~~~l~----~~la~~~~~~------~v~~~~ggt~al~~~~~~l~ 68 (394)
T 1o69_A 7 PPHMGGNELKYIEEVFKSNYI----AP----LGEFVNRFE----QSVKDYSKSE------NALALNSATAALHLALRVAG 68 (394)
T ss_dssp -----CCHHHHHHHHHHHTTT----SC----TTHHHHHHH----HHHHHHHCCS------EEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHcCCc----cC----CChHHHHHH----HHHHHHhCCC------cEEEeCCHHHHHHHHHHHcC
Confidence 444677888888888765331 10 012244444 7777777763 388888888 888899999
Q ss_pred cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEcCCCCCCcc
Q 023191 133 LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAGASAYARLY 210 (286)
Q Consensus 133 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~~~n~g~~~ 210 (286)
+++||+|+++.+.|.++.. .+...|.+++.++ .+ +++.+|++++++.+++. ++++|++++ .+|...
T Consensus 69 ~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~-~~G~~~ 136 (394)
T 1o69_A 69 VKQDDIVLASSFTFIASVA--------PICYLKAKPVFID--CD-ETYNIDVDLLKLAIKECEKKPKALILTH-LYGNAA 136 (394)
T ss_dssp CCTTCEEEEESSSCGGGTH--------HHHHTTCEEEEEC--BC-TTSSBCHHHHHHHHHHCSSCCCEEEEEC-GGGCCC
T ss_pred CCCCCEEEECCCccHHHHH--------HHHHcCCEEEEEE--eC-CCCCcCHHHHHHHHhcccCCceEEEEEC-CCCChh
Confidence 9999999999977776644 3345666565555 44 56889999999999764 689998874 467889
Q ss_pred CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEe-cchhhhh
Q 023191 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR-KGVKEIN 278 (286)
Q Consensus 211 ~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~-~~~~~~~ 278 (286)
++++|.++|+++|+++|+|++|+.|....+.....+..+|+.++|.||+++|+++|+++++ +++.+..
T Consensus 137 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l 205 (394)
T 1o69_A 137 KMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKA 205 (394)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHH
Confidence 9999999999999999999999877665443211223488899999999987777999996 5655444
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=167.98 Aligned_cols=210 Identities=12% Similarity=0.078 Sum_probs=148.6
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
++.++|..++++ +++.+++++.+.+.+.. .+| +. .+ .++++++.+++.+.+|.+.+. .+|++|+|++
T Consensus 23 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~-~~y------~~-~~-~~lr~~la~~~~~~~~~~~~~--~~i~~t~g~~ 91 (377)
T 3fdb_A 23 QGVLPLWVAESDFSTCPAVLQAITDAVQREA-FGY------QP-DG-SLLSQATAEFYADRYGYQARP--EWIFPIPDVV 91 (377)
T ss_dssp TTSEECCSSCCCSCCCHHHHHHHHHHHHTTC-CSS------CC-SS-CCHHHHHHHHHHHHHCCCCCG--GGEEEESCHH
T ss_pred CCeeeecccCCCCCCCHHHHHHHHHHHHcCC-CCC------CC-CC-HHHHHHHHHHHHHHhCCCCCH--HHEEEeCChH
Confidence 357899888874 68999999988876521 123 22 23 577888888888888854322 3699999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++..++.+++++||+|+++.+.|.++.. .+...|.+++.++ .+ ++ +|++++++++++ ++++++++
T Consensus 92 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~--~~-~~--~d~~~l~~~l~~-~~~~v~i~ 157 (377)
T 3fdb_A 92 RGLYIAIDHFTPAQSKVIVPTPAYPPFFH--------LLSATQREGIFID--AT-GG--INLHDVEKGFQA-GARSILLC 157 (377)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESCCTHHHH--------HHHHHTCCEEEEE--CT-TS--CCHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCcHhHHH--------HHHHcCCEEEEcc--CC-CC--CCHHHHHHHhcc-CCCEEEEe
Confidence 8887999999999999999966665432 4445676666565 44 22 999999999988 79999887
Q ss_pred -CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-----cceEEEeCCCCCCCC--CCceEEEE
Q 023191 203 -ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-----YADVVTTTTHKSLRG--PRGAMIFF 270 (286)
Q Consensus 203 -~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-----~~D~v~~s~~K~l~g--p~gG~l~~ 270 (286)
++| +|...+ +++|+++|++||+++|+|++|+...........++. ..++++.|++|+++. .+.|++++
T Consensus 158 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 237 (377)
T 3fdb_A 158 NPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIF 237 (377)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEe
Confidence 666 666554 677888899999999999998764332201111111 244889999999843 34487776
Q ss_pred -ecchhhhhcc
Q 023191 271 -RKGVKEINKQ 280 (286)
Q Consensus 271 -~~~~~~~~~~ 280 (286)
++++.+..++
T Consensus 238 ~~~~~~~~~~~ 248 (377)
T 3fdb_A 238 SNPSDAEHWQQ 248 (377)
T ss_dssp CSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 5566665543
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=174.89 Aligned_cols=197 Identities=11% Similarity=0.027 Sum_probs=140.9
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcc------eeEEeCCChH-HHHHHHHH
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG------VNVQSLSGSP-SNFQVYTA 131 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~------~~v~~~sG~~-a~~~~l~a 131 (286)
|..+.+.+...+.... ..|..+....++|+.+.+++++++|.+.+.+. ...++++|++ +++.++.+
T Consensus 92 ~~~~~~~~~~~~n~~~-------~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ 164 (481)
T 4e1o_A 92 PSLLGDMLADAINCLG-------FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLA 164 (481)
T ss_dssp HHHHHHHHHHHHCCCC-------SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccc-------CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHH
Confidence 4445555555554311 12445578899999999999999998653100 1356667766 77766655
Q ss_pred hc-------------------CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhh
Q 023191 132 LL-------------------KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT 192 (286)
Q Consensus 132 ~~-------------------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~ 192 (286)
.. .+++.|++++..|.++.. .+.+.|.+++.+| .+ +++.+|+++|+++++
T Consensus 165 ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~Le~~i~ 233 (481)
T 4e1o_A 165 ARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEK--------AGLISLVKMKFLP--VD-DNFSLRGEALQKAIE 233 (481)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHH--------HHHHHTCEEEEEC--CC-TTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHH--------HHHhCCCceEEEE--cC-CCCcCCHHHHHHHHH
Confidence 42 267899999977777544 3345676666665 44 578999999999997
Q ss_pred hcC-----CcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCC---CCCcceEEEeCCCCCCCC
Q 023191 193 LFR-----PKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS---PFEYADVVTTTTHKSLRG 262 (286)
Q Consensus 193 ~~~-----tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~---~~~~~D~v~~s~~K~l~g 262 (286)
+.+ |++|+++ +++ +|.+.|+++|+++|++||+++++|+||+.+......... .++.+|++++++||||++
T Consensus 234 ~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~ 313 (481)
T 4e1o_A 234 EDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMV 313 (481)
T ss_dssp HHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSC
T ss_pred HHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCC
Confidence 622 5666665 444 789999999999999999999999999877554322211 223479999999999999
Q ss_pred CCc-eEEEEecc
Q 023191 263 PRG-AMIFFRKG 273 (286)
Q Consensus 263 p~g-G~l~~~~~ 273 (286)
|.| |+++++++
T Consensus 314 p~g~g~l~~~~~ 325 (481)
T 4e1o_A 314 HFDCTGFWVKDK 325 (481)
T ss_dssp CSSCEEEEESBH
T ss_pred CCceEEEEEeCH
Confidence 999 99999875
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-21 Score=172.29 Aligned_cols=207 Identities=18% Similarity=0.218 Sum_probs=144.6
Q ss_pred cCceecCCCCC---CCHHHHHHhccccccCCCCCCCCCccc-CCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 47 KGLELIPSENF---TSVSVMQAVGSVMTNKYSEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~~---~~~~v~~a~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
..++|..+.+. +++.+++++.+.+.. +..++...++. +......+ +++.+++++|++ + .|++++|+
T Consensus 46 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~-~----~i~~~sGs 115 (401)
T 1fc4_A 46 HVINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMASVRFICGTQDSHKE----LEQKLAAFLGME-D----AILYSSCF 115 (401)
T ss_dssp EEEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCHHHHCCBHHHHH----HHHHHHHHHTCS-E----EEEESCHH
T ss_pred cEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCCCcccCCcHHHHH----HHHHHHHHhCCC-c----EEEeCChH
Confidence 45777776443 489999999887754 32222221111 11233344 557777788886 2 58889997
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCc
Q 023191 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPK 197 (286)
Q Consensus 123 ~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk 197 (286)
.++..++.+++++||.|+++.+.|+++.. .+...|..++.++ ..|++++++.+++. +++
T Consensus 116 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~~~~~~~--------~~d~~~l~~~l~~~~~~~~~~~ 179 (401)
T 1fc4_A 116 DANGGLFETLLGAEDAIISDALNHASIID--------GVRLCKAKRYRYA--------NNDMQELEARLKEAREAGARHV 179 (401)
T ss_dssp HHHHTTHHHHCCTTCEEEEETTCCHHHHH--------HHHTSCSEEEEEC--------TTCHHHHHHHHHHHHHTTCSSE
T ss_pred HHHHHHHHHHcCCCCEEEEcchhHHHHHH--------HHHHcCCceEEEC--------CCCHHHHHHHHHHhhccCCCce
Confidence 77777889999999999999977765432 3345565444332 24889999988753 689
Q ss_pred EEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccc-cCCC-C--CCC-CcceEEEeCCCCCCCCCCceEEEE
Q 023191 198 LIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVA-AGVI-P--SPF-EYADVVTTTTHKSLRGPRGAMIFF 270 (286)
Q Consensus 198 ~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~-~~~~-~--~~~-~~~D~v~~s~~K~l~gp~gG~l~~ 270 (286)
+|+++ ++| +|...++++|.++|++||+++|+|++|+.|... .+.. . ..+ .+.|+++.|+||+|+|+.||++++
T Consensus 180 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~ 259 (401)
T 1fc4_A 180 LIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAA 259 (401)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEE
T ss_pred EEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEc
Confidence 99987 555 778889999999999999999999998767652 1110 0 111 147999999999996666899999
Q ss_pred ecchhhhhc
Q 023191 271 RKGVKEINK 279 (286)
Q Consensus 271 ~~~~~~~~~ 279 (286)
++++.+..+
T Consensus 260 ~~~~~~~l~ 268 (401)
T 1fc4_A 260 RKEVVEWLR 268 (401)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888766554
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-21 Score=173.77 Aligned_cols=178 Identities=14% Similarity=0.162 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEecc-CCCCcccCccccc--cccccccceeeeE
Q 023191 93 AESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD-LPHGGHLSHGYQT--DTKKISAVSIFFE 169 (286)
Q Consensus 93 l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~-~~~~~~~~~~~~~--~~~~~~~~g~~~~ 169 (286)
.++++++++++++|.+... .++++++|+.++.+++.++++|||+|++++ +.|.++....... ++......|.+++
T Consensus 66 ~~~~l~~~la~~~g~~~~~--~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~ 143 (431)
T 3ht4_A 66 GRDTLEKVYADVFGAEAGL--VRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN 143 (431)
T ss_dssp HHHHHHHHHHHHTTCSEEC--CBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred hHHHHHHHHHHHhCCCccc--ccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence 3556779999999987632 234477776688889999999999999998 7777654321100 1112334565555
Q ss_pred EEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-----CCCccCHHHHHHHHHh--cCCEEEEeccccccccccCC
Q 023191 170 TMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-----YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGV 241 (286)
Q Consensus 170 ~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-----~g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~ 241 (286)
.++ .+ +++.+|++++++++++ +|++|+++ ++| ++...++++|+++|++ +|+++|+|++|+.+......
T Consensus 144 ~v~--~~-~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~ 219 (431)
T 3ht4_A 144 AVP--LT-EGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEP 219 (431)
T ss_dssp ECC--BC-TTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCG
T ss_pred EeC--CC-CCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCc
Confidence 554 54 4588999999999987 89999996 333 3356789999999999 99999999998876543221
Q ss_pred CCCCCCcceEEEeCCCCCCCC---CCceEEEEecchhhhhc
Q 023191 242 IPSPFEYADVVTTTTHKSLRG---PRGAMIFFRKGVKEINK 279 (286)
Q Consensus 242 ~~~~~~~~D~v~~s~~K~l~g---p~gG~l~~~~~~~~~~~ 279 (286)
... ++|++++|++|+++| +.||++++++++.+..+
T Consensus 220 ~~~---g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 257 (431)
T 3ht4_A 220 CHV---GADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACA 257 (431)
T ss_dssp GGT---TCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred ccc---CCeEEEcCccccCCCCCCCceEEEEecHHHHHHHH
Confidence 112 489999999999876 78899999988776554
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=168.47 Aligned_cols=206 Identities=17% Similarity=0.152 Sum_probs=144.3
Q ss_pred cCceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcc-cCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 47 KGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARY-YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
..++|..+++ ++++.+++++.+.+.+ +..+++..++ ++......+ +++.+++++|++. .|++++|+
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~-----~i~~~sGt 109 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQA----LEEELAEWLGYSR-----ALLFISGF 109 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHH----HHHHHHHHHTCSE-----EEEESCHH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHH----HHHHHHHHhCCCc-----EEEeCCcH
Confidence 4688888775 4689999999888754 1112221111 122334444 4477777778752 58889996
Q ss_pred HHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEE
Q 023191 123 PSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIV 200 (286)
Q Consensus 123 ~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~ 200 (286)
.++..++.+++++||.|+++.+.|+++.. .+...|.+++.+| . .|++++++.+++. ++++|+
T Consensus 110 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~~~~~~~--~------~d~~~l~~~l~~~~~~~~~v~ 173 (384)
T 1bs0_A 110 AANQAVIAAMMAKEDRIAADRLSHASLLE--------AASLSPSQLRRFA--H------NDVTHLARLLASPCPGQQMVV 173 (384)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHH--------HHHTSSSEEEEEC--T------TCHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHhCCCCcEEEEcccccHHHHH--------HHHHcCCCEEEeC--C------CCHHHHHHHHHhcCCCCeEEE
Confidence 67777889999999999999976665543 3345565554443 2 4899999998763 267787
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEecccccccccc-CCC-CCCC-CcceEEEeCCCCCCCCCCceEEEEecchh
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA-GVI-PSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVK 275 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~-~~~-~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~ 275 (286)
++ ++| +|...++++|.++|++||+++|+|++|+.|.... +.. ...+ .+.|++++|+||+++ |.||++++++++.
T Consensus 174 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~~~~ 252 (384)
T 1bs0_A 174 TEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG-VSGAAVLCSSTVA 252 (384)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS-SCCEEEEECHHHH
T ss_pred EeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh-ccCcEEEeCHHHH
Confidence 77 556 7788899999999999999999999998765421 110 0011 137899999999885 7789999998776
Q ss_pred hhhc
Q 023191 276 EINK 279 (286)
Q Consensus 276 ~~~~ 279 (286)
+..+
T Consensus 253 ~~l~ 256 (384)
T 1bs0_A 253 DYLL 256 (384)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=175.94 Aligned_cols=176 Identities=14% Similarity=0.052 Sum_probs=135.9
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCC--CCcceeEEeCCChH-HHHHHHHHhcCCC--------CeEEeccCCCCcccCccc
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDP--EKWGVNVQSLSGSP-SNFQVYTALLKPH--------DRIMALDLPHGGHLSHGY 154 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~--~~~~~~v~~~sG~~-a~~~~l~a~~~~G--------d~Vl~~~~~~~~~~~~~~ 154 (286)
......++++++++++++++|++. +. ...++++|++ ++..++.++.++| |+|+++.+.|.++..
T Consensus 133 ~~p~~~~le~~l~~~la~~~g~~~~~~~--v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~--- 207 (514)
T 3mad_A 133 LWPSTAKFEAEVVAMTAHMLGGDAAGGT--VCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDK--- 207 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTGGGGTSC--CEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHH---
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCccCC--cceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHH---
Confidence 345677899999999999999874 22 1228888888 8888889888776 999999966666432
Q ss_pred cccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccc
Q 023191 155 QTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAH 232 (286)
Q Consensus 155 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~ 232 (286)
.+...|.+++.++ .+ +++.+|+++|++++++ ++++|+++ ++| +|...|+++|.++|++||+++|+|++|
T Consensus 208 -----~~~~~G~~v~~v~--~~-~~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~ 278 (514)
T 3mad_A 208 -----AAQYFGIKLVRTP--LD-ADYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACL 278 (514)
T ss_dssp -----HHHHHTCEEEEEC--BC-TTSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTT
T ss_pred -----HHHHcCCeeEEee--eC-CCCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEeccc
Confidence 4456676666665 44 4789999999999987 89999987 655 788999999999999999999999998
Q ss_pred cccccc----cCC----CCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchh
Q 023191 233 ISGLVA----AGV----IPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (286)
Q Consensus 233 ~~g~~~----~~~----~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (286)
+.+... .+. ......++|++++++||++++|.+ |+++++++..
T Consensus 279 ~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~ 330 (514)
T 3mad_A 279 GGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDL 330 (514)
T ss_dssp TTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHH
T ss_pred ccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHH
Confidence 755432 011 111123589999999999888877 9999988643
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-20 Score=167.21 Aligned_cols=230 Identities=11% Similarity=0.082 Sum_probs=153.1
Q ss_pred cccChHHHHHHHHHHHHH-----HcCceecCCCC-------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHH
Q 023191 28 EVVDPEIADIIEHEKARQ-----WKGLELIPSEN-------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAES 95 (286)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~-----~~~i~L~~~e~-------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (286)
...+..++.......+.. .+.|+|..|++ ++++.+.+++.+...... ..|+...+..++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~g~~~lr~ 87 (418)
T 3rq1_A 15 KKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEH-------VGYAPIAGIPDFLC 87 (418)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHH-------HSCCCTTCCHHHHH
T ss_pred CCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhccccc-------CCCCCCCChHHHHH
Confidence 345556666554433222 25789988852 468889888877553211 11334456778998
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
++.+++.+..+.+.. .+|++|+|++ ++.+++.++++|||+|+++++.|.++ ...+...|.+++.++
T Consensus 88 ~ia~~~~~~~~~~~~---~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~--------~~~~~~~g~~~~~v~-- 154 (418)
T 3rq1_A 88 AAEKECFGNFRPEGH---IRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAY--------RVICSDTGRTLVTYS-- 154 (418)
T ss_dssp HHHHHHHGGGCCSSE---EEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHH--------HHHHHHTTCEEEEEC--
T ss_pred HHHHHHhcccCcccc---ccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhH--------HHHHHHcCCEEEEEe--
Confidence 888888777665421 3699999999 88889999999999999999555443 335556776666665
Q ss_pred cCCCCCCCCHHHHHHHhhhc---CCc-EEEEc-C-CC-CCCccCHH---HHHHHHH------hcCCEEEEeccccccccc
Q 023191 175 LNESTGYIDYDQLEKSATLF---RPK-LIVAG-A-SA-YARLYDYE---RIRKVCN------KQKAIMLADMAHISGLVA 238 (286)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~---~tk-~v~i~-~-~n-~g~~~~l~---~I~~ia~------~~~~~vivD~a~~~g~~~ 238 (286)
++.+++.+|++++++.+++. +++ +++++ | +| +|...+.+ +|+++|+ +||+++|+|++|.. ...
T Consensus 155 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~-~~~ 233 (418)
T 3rq1_A 155 LFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLD-YSG 233 (418)
T ss_dssp SBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGG-GSS
T ss_pred eeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccc-ccC
Confidence 43345789999999998752 666 67777 6 56 77776655 5556666 89999999999742 221
Q ss_pred cC-----CCC--CCCCcc---eEEEeCCCCCCC--CCCceEEEE---ecchhhhhc
Q 023191 239 AG-----VIP--SPFEYA---DVVTTTTHKSLR--GPRGAMIFF---RKGVKEINK 279 (286)
Q Consensus 239 ~~-----~~~--~~~~~~---D~v~~s~~K~l~--gp~gG~l~~---~~~~~~~~~ 279 (286)
.+ +.. ..+. - .+++.|++|+++ |.+.|++++ ++++.+..+
T Consensus 234 ~~~~~~~~~~~~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 288 (418)
T 3rq1_A 234 EKDEVRAFFNKFSHLP-KEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFF 288 (418)
T ss_dssp CHHHHHGGGGGGTTCC-TTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC-CCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHH
Confidence 11 000 0000 1 277899999875 445599998 677766554
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-21 Score=174.91 Aligned_cols=233 Identities=14% Similarity=0.064 Sum_probs=153.5
Q ss_pred chhhccccccccChHHHHHHHHHHHHHHcCceecCCCCC----CCHHHHHHhccccccCC--CCCCCCCcccCCcchHHH
Q 023191 19 WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENF----TSVSVMQAVGSVMTNKY--SEGYPGARYYGGNEYIDM 92 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~----~~~~v~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 92 (286)
+..+++++...+.+..+..+.... ...+.++|..+.+. +++.+.+++.+.+.... ..+| +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y------~~~~~~~~ 78 (397)
T 2zyj_A 6 WSEAFGKGAGRIQASTIRELLKLT-QRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQY------SPTEGYAP 78 (397)
T ss_dssp HHHHSCGGGGGCCCCHHHHHHHHH-TSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSC------CCTTCCHH
T ss_pred HHHHhhhhhcccCchHHHHHHhhc-cCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCC------CCCCCCHH
Confidence 444556666666655555444432 23467899776542 56788898887765310 0122 22234556
Q ss_pred HHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEE
Q 023191 93 AESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 171 (286)
Q Consensus 93 l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 171 (286)
++ +.+++++|++++ +|++|+|++ ++.+++.+++++||+|+++.+.|.++. ..+...|.+++.+
T Consensus 79 l~----~~la~~~g~~~~----~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~--------~~~~~~g~~~~~~ 142 (397)
T 2zyj_A 79 LR----AFVAEWIGVRPE----EVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAI--------QAFRLQGPRFLTV 142 (397)
T ss_dssp HH----HHHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHH--------HHHHTTCCEEEEE
T ss_pred HH----HHHHHHhCCChh----hEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHH--------HHHHHcCCEEEec
Confidence 66 455555577654 599999999 887788999999999999996655543 2444566666656
Q ss_pred ecccCCCCCCCCHHHHHHHhhhcCCcEEE-Ec-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 172 PYRLNESTGYIDYDQLEKSATLFRPKLIV-AG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 172 ~~~~~~~~~~~d~e~l~~~i~~~~tk~v~-i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
++ + ++ .+|++++++.+++.++++|+ ++ ++| +|...+ +++|+++|++||+++|+|++|+........ ...
T Consensus 143 ~~--~-~~-~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~-~~~ 217 (397)
T 2zyj_A 143 PA--G-EE-GPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEAR-LPS 217 (397)
T ss_dssp EE--E-TT-EECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCC-CCC
T ss_pred Cc--C-CC-CCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCC-CCc
Confidence 54 3 22 38999999999865789885 45 656 676666 458999999999999999998765432111 111
Q ss_pred CC--c------ceEEEeCCCCCCCC-CCceEEEEecchhhhhc
Q 023191 246 FE--Y------ADVVTTTTHKSLRG-PRGAMIFFRKGVKEINK 279 (286)
Q Consensus 246 ~~--~------~D~v~~s~~K~l~g-p~gG~l~~~~~~~~~~~ 279 (286)
+. + ..+++.|+||+|++ .+.|++++++++.+..+
T Consensus 218 ~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~ 260 (397)
T 2zyj_A 218 LFELAREAGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLV 260 (397)
T ss_dssp HHHHHHHHTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHH
T ss_pred hhhhCcccCCCeEEEEecccccccccceeEEEecCHHHHHHHH
Confidence 11 1 23889999999971 23399999987765544
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-21 Score=174.87 Aligned_cols=227 Identities=10% Similarity=0.008 Sum_probs=149.9
Q ss_pred HcCc-eecCCCCCCCHHHHHHhccccccCCCC---CC--CC----CcccCCcchHHHHHHHHHHHHHHHCCCCCCCccee
Q 023191 46 WKGL-ELIPSENFTSVSVMQAVGSVMTNKYSE---GY--PG----ARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVN 115 (286)
Q Consensus 46 ~~~i-~L~~~e~~~~~~v~~a~~~~l~~~~~~---~~--~~----~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 115 (286)
.+.| +|..+.+..++.+.+++.+++...... +. +. ...|+...+..++++++.+++.+.+|+..+. .+
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~--~~ 108 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTS--EN 108 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--GG
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCH--HH
Confidence 4678 999888877766655555544331110 00 10 1235555677899999999998888764322 36
Q ss_pred EEeCCChH-HHHHHHHHhcCCCC--------------eEEec-cCCCCcccCccccccccccccceeeeEEEecccCCC-
Q 023191 116 VQSLSGSP-SNFQVYTALLKPHD--------------RIMAL-DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES- 178 (286)
Q Consensus 116 v~~~sG~~-a~~~~l~a~~~~Gd--------------~Vl~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~- 178 (286)
|++|+|++ ++.+++.+++++|| +|+++ ++.|.++....... . .+.+....+++++.+.+
T Consensus 109 i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~ 184 (444)
T 3if2_A 109 IALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEG--Q--HFAAVLPHIDEVTHDGEE 184 (444)
T ss_dssp EEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSS--C--CEEECCCEEEEEEETTEE
T ss_pred EEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccccc--c--hhhccCceEEeccccccc
Confidence 99999999 88889999999998 78876 77776664322100 0 11222234444455422
Q ss_pred ---CCCCCHHHHHHH---hhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--C
Q 023191 179 ---TGYIDYDQLEKS---ATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--P 245 (286)
Q Consensus 179 ---~~~~d~e~l~~~---i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~ 245 (286)
++.+|+++|+++ +.+ ++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+.+......... .
T Consensus 185 g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~ 263 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLN 263 (444)
T ss_dssp EEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCC
T ss_pred CccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccccccccccccc
Confidence 247899999987 555 88999987 777 777777 888999999999999999998643221111110 1
Q ss_pred CCcceEEEeCCCCCCC-CCCceEEEEecchhhhhc
Q 023191 246 FEYADVVTTTTHKSLR-GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 246 ~~~~D~v~~s~~K~l~-gp~gG~l~~~~~~~~~~~ 279 (286)
..+.+++++|+||++. |.+.|+++.++++.+..+
T Consensus 264 ~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~ 298 (444)
T 3if2_A 264 WDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVS 298 (444)
T ss_dssp CCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHH
T ss_pred CCCCEEEEechhhccCCCCceEEEEECHHHHHHHH
Confidence 1247899999999632 223399998888776554
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=171.35 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=138.4
Q ss_pred CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-cC
Q 023191 56 NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LK 134 (286)
Q Consensus 56 ~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~~ 134 (286)
+++++++++++.+.+.+.....|+ ...+..++.+++++.+++++|++. .|++++|+.++.+++.++ ++
T Consensus 12 ~~~~~~~~~a~~~~~~~~~~~~~~------~~~g~~~l~~~l~~~la~~~g~~~-----~i~~~~gt~al~~~~~~~~~~ 80 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQSNRWAISG------YWTGEESMERKFAKAFADFNGVPY-----CVPTTSGSTALMLALEALGIG 80 (418)
T ss_dssp SCCCHHHHHHHHHHHHHTCCSTTS------BCCSSCCHHHHHHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHhcCCccccC------cccCCHHHHHHHHHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCCC
Confidence 346899999999888652111121 112223445556688888889862 477777766888789999 89
Q ss_pred CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHH
Q 023191 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYER 214 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~ 214 (286)
+||+|+++.+.|.++.. .+...|.+++.++ .+++++.+|++++++.+++ ++++|+++. .+|...++++
T Consensus 81 ~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~~~--~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~~ 148 (418)
T 2c81_A 81 EGDEVIVPSLTWIATAT--------AVLNVNALPVFVD--VEADTYCIDPQLIKSAITD-KTKAIIPVH-LFGSMANMDE 148 (418)
T ss_dssp TTCEEEEESSSCTHHHH--------HHHHTTCEEEEEC--BCTTTCSBCHHHHGGGCCT-TEEEECCBC-CTTCCCCHHH
T ss_pred CcCEEEECCCccHhHHH--------HHHHcCCEEEEEe--cCCCCCCcCHHHHHHhhCC-CCeEEEEeC-CcCCcccHHH
Confidence 99999999977766643 3345666565554 5534689999999999987 889888753 2688899999
Q ss_pred HHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEe-cchhhh
Q 023191 215 IRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR-KGVKEI 277 (286)
Q Consensus 215 I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~-~~~~~~ 277 (286)
|.++|++||+++|+|++|+.+....+.....+..+++.++|.||++++++||+++++ +++.+.
T Consensus 149 i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~ 212 (418)
T 2c81_A 149 INEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTAGEGGIIVTKNPRLFEL 212 (418)
T ss_dssp HHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHH
T ss_pred HHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCCCCeEEEEECCHHHHHH
Confidence 999999999999999999987632221111111133444445999976566999986 455443
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=169.67 Aligned_cols=196 Identities=13% Similarity=0.095 Sum_probs=144.2
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
+.|+|.. +..|+.+++++.+.+.+.+ + .......+++ +.+++++|.+ ++++++|++ ++
T Consensus 9 ~~i~~~~--p~~~~~~~~a~~~~~~~~~---~------~~~~~~~~l~----~~la~~~~~~------~~~~~~~gt~al 67 (393)
T 1mdo_A 9 DFLPFSR--PAMGAEELAAVKTVLDSGW---I------TTGPKNQELE----AAFCRLTGNQ------YAVAVSSATAGM 67 (393)
T ss_dssp CCBCSCC--CCCCHHHHHHHHHHHHHTC---C------SSSHHHHHHH----HHHHHHHCCS------EEEEESCHHHHH
T ss_pred cccccCC--CCCCHHHHHHHHHHHhcCC---c------CCChHHHHHH----HHHHHHhCCC------cEEEecChHHHH
Confidence 4577754 4467888999988876522 1 1224445555 6777777865 267777777 88
Q ss_pred HHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 023191 126 FQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS 204 (286)
Q Consensus 126 ~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~ 204 (286)
.+++.++ +++||+|+++++.|.++.. .+...|.+++.++ .+++++.+|++++++.+++ ++++|++++
T Consensus 68 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~v~--~~~~~~~~d~~~l~~~l~~-~~~~v~~~~- 135 (393)
T 1mdo_A 68 HIALMALGIGEGDEVITPSMTWVSTLN--------MIVLLGANPVMVD--VDRDTLMVTPEHIEAAITP-QTKAIIPVH- 135 (393)
T ss_dssp HHHHHHTTCCTTCEEEEESSSCHHHHH--------HHHHTTCEEEEEC--BCTTTCCBCHHHHHHHCCT-TEEEECCBC-
T ss_pred HHHHHHcCCCCCCEEEeCCCccHhHHH--------HHHHCCCEEEEEe--ccCCcCCCCHHHHHHhcCC-CceEEEEeC-
Confidence 8899999 9999999999977766543 3345666565554 5544578999999999987 889888763
Q ss_pred CCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCC--CCCCCCCceEEEEe-cchhhhh
Q 023191 205 AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH--KSLRGPRGAMIFFR-KGVKEIN 278 (286)
Q Consensus 205 n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~--K~l~gp~gG~l~~~-~~~~~~~ 278 (286)
.+|...++++|.++|+++|+++|+|++|+.|....+. +.+. .|++++|+| |+++|+++|+++++ +++.+..
T Consensus 136 ~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~~~~--~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l 209 (393)
T 1mdo_A 136 YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGR-HIGA--RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKL 209 (393)
T ss_dssp GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE-ETTS--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCe-ecCC--CCeEEEeCCCCCccccccceEEEeCCHHHHHHH
Confidence 3677889999999999999999999999877554221 1111 799999999 99988888999997 4665443
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=173.79 Aligned_cols=176 Identities=18% Similarity=0.139 Sum_probs=133.4
Q ss_pred CCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--------CC-----C-eEEeccCCCCcc
Q 023191 85 GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK--------PH-----D-RIMALDLPHGGH 149 (286)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~--------~G-----d-~Vl~~~~~~~~~ 149 (286)
.......++|+.+++++++++|++.+. .++++++|++ ++..++.++.. +| + .|++++..|.++
T Consensus 125 ~~~~~~~~le~~~~~~la~~~g~~~~~--~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~ 202 (504)
T 2okj_A 125 EIAPVFVLMEQITLKKMREIVGWSSKD--GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI 202 (504)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCSSS--CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred hhChHHHHHHHHHHHHHHHHhCCCCCC--CCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHH
Confidence 334667789999999999999997311 3699999988 88777777642 56 6 788888777766
Q ss_pred cCcccccccccccccee---eeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc-CCC-CCCccCHHHHHHHH
Q 023191 150 LSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG-ASA-YARLYDYERIRKVC 219 (286)
Q Consensus 150 ~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~-~~n-~g~~~~l~~I~~ia 219 (286)
.... ...|. +++.+| .+ +++.+|+++|++++++. +|++|+++ ++| +|.+.|+++|+++|
T Consensus 203 ~~~~--------~~~g~g~~~v~~v~--~~-~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la 271 (504)
T 2okj_A 203 KKAG--------AALGFGTDNVILIK--CN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADIC 271 (504)
T ss_dssp HHHH--------HHTTSCGGGEEEEC--BC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHH
T ss_pred HHHH--------HHcCCCcccEEEEe--cC-CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHH
Confidence 4432 23332 455565 44 56899999999999763 48888887 656 78899999999999
Q ss_pred HhcCCEEEEeccccccccccCCCC---CCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 220 NKQKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 220 ~~~~~~vivD~a~~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
++||+++|+|++|+.+........ ..+.++|++++++|||+++|.+ |+++++++
T Consensus 272 ~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~ 329 (504)
T 2okj_A 272 EKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK 329 (504)
T ss_dssp HHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST
T ss_pred HHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECH
Confidence 999999999999988776422111 1123589999999999998987 99999874
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=173.60 Aligned_cols=196 Identities=10% Similarity=0.079 Sum_probs=140.1
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCc-----ceeEEeCCChH-HHHHHHHHh
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKW-----GVNVQSLSGSP-SNFQVYTAL 132 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~-----~~~v~~~sG~~-a~~~~l~a~ 132 (286)
+..+.+++..++.. +. ..|.......++|+.+++++++++|++.+.. ...+++|+|++ +++.++.+.
T Consensus 87 ~~~~~~~~~~~~n~-~~------~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~ 159 (486)
T 1js3_A 87 PAMLADMLCGAIGC-IG------FSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAA 159 (486)
T ss_dssp HHHHHHHHHHHHCC-CC------SSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-Cc------cccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHH
Confidence 34566666666532 11 1134446678999999999999999974200 02477888888 777666655
Q ss_pred cCC---------CC--------e--EEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh
Q 023191 133 LKP---------HD--------R--IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 193 (286)
Q Consensus 133 ~~~---------Gd--------~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~ 193 (286)
.++ || + |+++++.|.++.. .+...|..++.++ ++ +++.+|+++|++++++
T Consensus 160 ~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~--------~~~~~G~~v~~v~--~d-~~~~~d~~~L~~~i~~ 228 (486)
T 1js3_A 160 RTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVER--------AGLIGGVKLKAIP--SD-GKFAMRASALQEALER 228 (486)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHH--------HHHHHTCEEEEEC--CC-TTSCCCHHHHHHHHHH
T ss_pred HHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHH--------HHHhCCCceEEee--cC-CCCCCCHHHHHHHHHH
Confidence 321 43 4 6778866655432 4556777666665 44 5789999999999986
Q ss_pred cCCc------EEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC---CCCCcceEEEeCCCCCCCC
Q 023191 194 FRPK------LIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP---SPFEYADVVTTTTHKSLRG 262 (286)
Q Consensus 194 ~~tk------~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~---~~~~~~D~v~~s~~K~l~g 262 (286)
+++ +|+++ ++| +|...|+++|+++|++||+++|+|+||+.+........ ..+.++|++++++|||+++
T Consensus 229 -~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~ 307 (486)
T 1js3_A 229 -DKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLV 307 (486)
T ss_dssp -HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSC
T ss_pred -HHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCC
Confidence 553 66666 666 88999999999999999999999999987765432111 1223589999999999998
Q ss_pred CCc-eEEEEecc
Q 023191 263 PRG-AMIFFRKG 273 (286)
Q Consensus 263 p~g-G~l~~~~~ 273 (286)
|.+ |+++++++
T Consensus 308 p~~~G~l~~~~~ 319 (486)
T 1js3_A 308 NFDCSAMWVKRR 319 (486)
T ss_dssp CSSCEEEEESCH
T ss_pred CcceEEEEEeCH
Confidence 877 99999875
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=170.35 Aligned_cols=208 Identities=12% Similarity=0.051 Sum_probs=141.2
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.|+|..+++ ++++.+++++.+.+..... ......|+...+..++++++.+++. +|+..+. .+|++++|++
T Consensus 70 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~--~~i~~t~G~~~ 143 (449)
T 3qgu_A 70 KIISLGIGDTTEPLPKYIADAMAKAAAGLAT--REGYSGYGAEQGQGALREAVASTFY--GHAGRAA--DEIFISDGSKC 143 (449)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHGGGG--SCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCG--GGEEEESCHHH
T ss_pred CEEEeeCCCCCCCCCHHHHHHHHHHHHhhcc--ccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCH--HHEEEccCHHH
Confidence 5799998887 4689999999887764210 0112234555667788888877776 5543222 3699999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee----------eEEEecccCCCCCCCCHHHHHHHhhh
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF----------FETMPYRLNESTGYIDYDQLEKSATL 193 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~~v~~~~~~~~~~~d~e~l~~~i~~ 193 (286)
++..+ .+++++||+|+++++.|.++.. .+...|.. +..++++.+ +++..|++++ +
T Consensus 144 al~~~-~~l~~~gd~Vl~~~p~~~~~~~--------~~~~~g~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~ 208 (449)
T 3qgu_A 144 DIARI-QMMFGSKPTVAVQDPSYPVYVD--------TSVMMGMTGDHNGTGFDGIEYMVCNPD-NHFFPDLSKA-----K 208 (449)
T ss_dssp HHHHH-HHHHCSSSCEEEEESCCTHHHH--------HHHHHTCSCCBCSSSBTTEEEEECCGG-GTTCCCGGGC-----C
T ss_pred HHHHH-HHHhCCCCEEEEcCCCChhHHH--------HHHHcCCcccccccccceeEEEecccc-cCCcCChhHc-----C
Confidence 66645 8889999999999966665542 33445544 555554322 2456665432 3
Q ss_pred cCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CC---CcceEEEeCCCCCCC--
Q 023191 194 FRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PF---EYADVVTTTTHKSLR-- 261 (286)
Q Consensus 194 ~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~---~~~D~v~~s~~K~l~-- 261 (286)
++++|+++ ++| +|...+ +++|+++|++||+++|+|++|............ .+ .+.++++.|++|+|+
T Consensus 209 -~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 287 (449)
T 3qgu_A 209 -RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT 287 (449)
T ss_dssp -CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred -CCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence 79999997 666 666554 788899999999999999998764332111110 11 136789999999985
Q ss_pred CCCceEEEEecchhh
Q 023191 262 GPRGAMIFFRKGVKE 276 (286)
Q Consensus 262 gp~gG~l~~~~~~~~ 276 (286)
|.+.|++++++++.+
T Consensus 288 G~r~G~~~~~~~~~~ 302 (449)
T 3qgu_A 288 GVRLGWTVVPKALKY 302 (449)
T ss_dssp TCCCEEEECCTTCBC
T ss_pred cceeEEEecCHHHHh
Confidence 555699999988764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.9e-21 Score=172.67 Aligned_cols=231 Identities=12% Similarity=0.071 Sum_probs=155.5
Q ss_pred ccccccccChHHHHHHHHHHHHH--HcCceecCC---CC--C--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHH
Q 023191 23 LNAPLEVVDPEIADIIEHEKARQ--WKGLELIPS---EN--F--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 93 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~L~~~---e~--~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 93 (286)
+.+++...+++.+..+....... .+.|+|..| ++ . +++.+++++.+.+......+ |+...+..++
T Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~------Y~~~~g~~~l 97 (420)
T 4f4e_A 24 LFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRG------YLPIDGIAAY 97 (420)
T ss_dssp TTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCC------CCCTTCCHHH
T ss_pred HhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCC------CCCCCCcHHH
Confidence 45667777777665555544332 367999888 33 2 34899999988876522112 3444667888
Q ss_pred HHHHHHHHHHHCCC--CCCCcceeEEeCCChH-HHHHH--HHHhcCCCCeEEeccCCCCcccCccccccccccccceeee
Q 023191 94 ESLCQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQV--YTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 168 (286)
Q Consensus 94 ~~~~~~~~~~~~g~--~~~~~~~~v~~~sG~~-a~~~~--l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 168 (286)
++++.+++....+. +++. .+|++|+|++ ++.++ +.++++|||+|++++|.|.+ +...+...|.++
T Consensus 98 r~~ia~~l~~~~~~~~~~~~--~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~--------~~~~~~~~g~~~ 167 (420)
T 4f4e_A 98 DASVQKLLLGDDSPLIAAGR--VVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWEN--------HRALFDMAGFEV 167 (420)
T ss_dssp HHHHHHHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHH--------HHHHHHHTTCCE
T ss_pred HHHHHHHhcCCCccccccCc--eEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHh--------HHHHHHHcCCeE
Confidence 88888888665442 3331 1599999999 77766 45678999999999955544 333555677777
Q ss_pred EEEecccCCCCCCCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCC
Q 023191 169 ETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGV 241 (286)
Q Consensus 169 ~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~ 241 (286)
+.+++. +.+++.+|++++++.+++ .++++++++ ++| +|... ++++|+++|++||+++|+|++|.......+.
T Consensus 168 ~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~ 246 (420)
T 4f4e_A 168 VAYPYY-DAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEA 246 (420)
T ss_dssp EEEECE-ETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTG
T ss_pred EEeeee-ccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcch
Confidence 667642 225688999999999973 267888887 666 67554 4778999999999999999997533221100
Q ss_pred CCC------CCCcceEEEeCCCCCCC--CCCceEEEE
Q 023191 242 IPS------PFEYADVVTTTTHKSLR--GPRGAMIFF 270 (286)
Q Consensus 242 ~~~------~~~~~D~v~~s~~K~l~--gp~gG~l~~ 270 (286)
... .....++++.|++|+|+ |.+.|++++
T Consensus 247 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 283 (420)
T 4f4e_A 247 DAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSI 283 (420)
T ss_dssp GGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEE
T ss_pred hhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEE
Confidence 000 01125688999999885 444588865
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-21 Score=175.65 Aligned_cols=211 Identities=15% Similarity=0.086 Sum_probs=147.9
Q ss_pred HcCceecCCCC----CCCHHHHHHhccccccCC--CCCCCCCcccCCcchHHHHHHHHHHHHHHHCC---CCCCCcceeE
Q 023191 46 WKGLELIPSEN----FTSVSVMQAVGSVMTNKY--SEGYPGARYYGGNEYIDMAESLCQKRALEAFR---LDPEKWGVNV 116 (286)
Q Consensus 46 ~~~i~L~~~e~----~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g---~~~~~~~~~v 116 (286)
.+.|+|..+.+ .+++.+.+++.+.+.... ..+ |+...+..++++++.+++.+.+| ++++ +|
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~------y~~~~g~~~lr~~la~~l~~~~g~~~~~~~----~v 112 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQ------YSTTEGDPVLKQQILKLLERMYGITGLDED----NL 112 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTS------CCCTTCCHHHHHHHHHHHHHHHCCCSCCGG----GE
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcC------CCCCCCCHHHHHHHHHHHHhccCCCCCCcc----cE
Confidence 46789977654 256889999888775410 012 23334567899888888888778 4443 59
Q ss_pred EeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh--
Q 023191 117 QSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL-- 193 (286)
Q Consensus 117 ~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~-- 193 (286)
++|+|++ ++.+++.+++++||+|+++++.|.++ ...+...|.+++.+++ +. + .+|++++++.+++
T Consensus 113 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~--------~~~~~~~g~~~~~v~~--~~-~-~~d~~~l~~~l~~~~ 180 (425)
T 1vp4_A 113 IFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGA--------INAFRQYLANFVVVPL--ED-D-GMDLNVLERKLSEFD 180 (425)
T ss_dssp EEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHH--------HHHHHTTTCEEEEEEE--ET-T-EECHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHH--------HHHHHHcCCEEEEecc--CC-C-CCCHHHHHHHHHhhh
Confidence 9999999 88778999999999999999655544 3344556766665654 42 2 3899999998875
Q ss_pred -----cCCcEEE-Ec-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC-----CcceEEEeCCC
Q 023191 194 -----FRPKLIV-AG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF-----EYADVVTTTTH 257 (286)
Q Consensus 194 -----~~tk~v~-i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~-----~~~D~v~~s~~ 257 (286)
.++++|+ ++ ++| +|...+ +++|+++|++||+++|+|++|+........ ...+ .+.++++.|++
T Consensus 181 ~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~-~~~~~~~~~~~~~i~~~s~s 259 (425)
T 1vp4_A 181 KNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGET-VDPIFKIGGPERVVLLNTFS 259 (425)
T ss_dssp HTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCC-CCCHHHHHCTTTEEEEEEST
T ss_pred hcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC-CcCHHHhCCCCCEEEEeccc
Confidence 3688885 55 656 676655 678999999999999999998764332111 1111 12578899999
Q ss_pred CCCC-CCCceEEEEecchhhhhc
Q 023191 258 KSLR-GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 258 K~l~-gp~gG~l~~~~~~~~~~~ 279 (286)
|+|+ |.+.|++++++++.+..+
T Consensus 260 K~~~~G~r~G~~~~~~~~~~~l~ 282 (425)
T 1vp4_A 260 KVLAPGLRIGMVAGSKEFIRKIV 282 (425)
T ss_dssp TTTCGGGCEEEEECCHHHHHHHH
T ss_pred cccccccceEEEeeCHHHHHHHH
Confidence 9987 223499999987765544
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=173.65 Aligned_cols=178 Identities=12% Similarity=-0.014 Sum_probs=131.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHCCCCCCCc-----ceeEEeCCChH-HHHHHHHHhc-------------------CCCCe
Q 023191 84 YGGNEYIDMAESLCQKRALEAFRLDPEKW-----GVNVQSLSGSP-SNFQVYTALL-------------------KPHDR 138 (286)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~g~~~~~~-----~~~v~~~sG~~-a~~~~l~a~~-------------------~~Gd~ 138 (286)
|...+...++|+++.+++++++|.+.+.. ....++|+|++ +++.++.+.. .|++.
T Consensus 105 ~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~ 184 (475)
T 3k40_A 105 WIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 184 (475)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEE
T ss_pred ccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeE
Confidence 45567888999999999999999974200 01366777777 7776665541 14578
Q ss_pred EEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcC-----CcEEEEc-CCC-CCCccC
Q 023191 139 IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR-----PKLIVAG-ASA-YARLYD 211 (286)
Q Consensus 139 Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~-----tk~v~i~-~~n-~g~~~~ 211 (286)
|+++...|.++.. .+.+.|.+++.+| ++ +++ +|+++|++++++.+ |++|+++ ++| +|.+.|
T Consensus 185 vi~s~~~H~s~~~--------~~~~~g~~~~~v~--~d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~ 252 (475)
T 3k40_A 185 GYCSDQAHSSVER--------AGLLGGVKLRSVQ--SE-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY 252 (475)
T ss_dssp EEEETTSCHHHHH--------HHHHHTCEEEEEC--CB-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred EEECCCchHHHHH--------HHHHcCCceEEEE--CC-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC
Confidence 9999988877654 3345676666665 45 467 99999999997621 5666665 554 789999
Q ss_pred HHHHHHHHHhcCCEEEEeccccccccccCCCCC---CCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 212 YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS---PFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 212 l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~---~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
+++|+++|++||+++|+|+||+.+......... .+..+|++++++|||+++|.| |+++++++
T Consensus 253 l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~ 318 (475)
T 3k40_A 253 LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDP 318 (475)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSG
T ss_pred HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCH
Confidence 999999999999999999999877554322211 223479999999999999999 99999875
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-20 Score=167.74 Aligned_cols=205 Identities=19% Similarity=0.184 Sum_probs=136.0
Q ss_pred cCceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHH
Q 023191 47 KGLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSN 125 (286)
Q Consensus 47 ~~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~ 125 (286)
+.|+|..+++ ++++.+++++.+..... ..|+......+++ +.+++++|.+. .+++++|+.++
T Consensus 4 ~~i~~~~~~~~~p~~~~~~a~~~~~~~~--------~~y~~~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~ 66 (347)
T 1jg8_A 4 MMIDLRSDTVTKPTEEMRKAMAQAEVGD--------DVYGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGN 66 (347)
T ss_dssp -CEECSCGGGCCCCHHHHHHHHTCCCCC--------GGGTCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHH
T ss_pred eEEEeccccCCCCCHHHHHHHhcCCCCC--------cccCCChHHHHHH----HHHHHHhCCce-----EEEecCcHHHH
Confidence 3578877776 46788999887654211 1233344555555 77777788753 35566665577
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEE
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIV 200 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~ 200 (286)
.+++.++++|||+|+++++.|.+.+... ..+...|.+++.+ .+ +++.+|++++++++++. +|++|+
T Consensus 67 ~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-----~~~~~~g~~~~~v---~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 67 QVSIMAHTQRGDEVILEADSHIFWYEVG-----AMAVLSGVMPHPV---PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIA 137 (347)
T ss_dssp HHHHHHHCCTTCEEEEETTCHHHHSSTT-----HHHHHTCCEEEEE---CE-ETTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHHHHHhcCCCCEEEEcCcchhhhcccc-----chhhccCeEEEEe---cC-CCCccCHHHHHHHhccccccccCceEEE
Confidence 7788899999999999996665432211 0123455544433 22 35678999999998752 688998
Q ss_pred Ec-CCC-C-CCccC---HHHHHHHHHhcCCEEEEeccccccccc-cCCCCCCC-CcceEEEeCCCCCCCCCCceEEEEec
Q 023191 201 AG-ASA-Y-ARLYD---YERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRK 272 (286)
Q Consensus 201 i~-~~n-~-g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~-~~~~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (286)
++ ++| + |...+ +++|.++|++||+++|+|++|..+... .+.....+ .++|.+++|+||++++|.||+++.++
T Consensus 138 ~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~ 217 (347)
T 1jg8_A 138 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR 217 (347)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH
T ss_pred EeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCH
Confidence 87 665 6 76655 578899999999999999998654221 12211111 14788888999999888777777776
Q ss_pred chhhh
Q 023191 273 GVKEI 277 (286)
Q Consensus 273 ~~~~~ 277 (286)
++.+.
T Consensus 218 ~~~~~ 222 (347)
T 1jg8_A 218 DFIER 222 (347)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-20 Score=171.63 Aligned_cols=221 Identities=12% Similarity=0.040 Sum_probs=152.2
Q ss_pred HHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 45 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 45 ~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
..+.++|..+....|..+++++.+.+.... + .....|+...+..++++++.+++.+.+|.+.+. .+|++|+|++
T Consensus 94 ~p~~i~~~~~~~~~p~~~~~~a~~~l~~~~--~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~ 168 (500)
T 3tcm_A 94 HPDLLQREEIKTLFSADSISRAKQILAMIP--G-RATGAYSHSQGIHGLRDAIASGIASRDGFPANA--DDIFLTDGASP 168 (500)
T ss_dssp SGGGGGCTTHHHHSCHHHHHHHHHHHTTST--T-SCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCG--GGEEEESSSHH
T ss_pred CcccccCCCCcccCCHHHHHHHHHHHHcCC--C-CcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCc--ccEEEcCCHHH
Confidence 345566655422357777777766665421 0 012335666778899999999998888854322 3699999999
Q ss_pred HHHHHHHHhc-CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCc
Q 023191 124 SNFQVYTALL-KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPK 197 (286)
Q Consensus 124 a~~~~l~a~~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk 197 (286)
++..++.+++ ++||.|+++++.|.++ ...+...|..++.++++.+ +++.+|+++|++.+++. ++|
T Consensus 169 al~~~~~~l~~~~gd~Vlv~~p~y~~~--------~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~~~k 239 (500)
T 3tcm_A 169 GVHLMMQLLIRNEKDGILVPIPQYPLY--------SASIALHGGALVPYYLNES-TGWGLETSDVKKQLEDARSRGINVR 239 (500)
T ss_dssp HHHHHHHHHCCSTTEEEEEEESCCTHH--------HHHHHHTTCEEEEEECBTT-TTSBCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCCCEEEEeCCCcHhH--------HHHHHHcCCEEEEEecccc-cCCCCCHHHHHHHHHHHHhcCCCce
Confidence 8877888988 8999999999555544 3355567766666654422 35799999999999763 688
Q ss_pred EEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC-------C----Ccc-eEEEeCCCCCC
Q 023191 198 LIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-------F----EYA-DVVTTTTHKSL 260 (286)
Q Consensus 198 ~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~-------~----~~~-D~v~~s~~K~l 260 (286)
+|+++ ++| +|...+ +++|+++|++||+++|+|++|.......+..... + ... .+++.|++|+|
T Consensus 240 ~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~ 319 (500)
T 3tcm_A 240 ALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGY 319 (500)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTT
T ss_pred EEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccC
Confidence 88886 766 676655 6677888999999999999987654432211111 0 112 26688999998
Q ss_pred C---CCCceEEEE---ecchhhhhc
Q 023191 261 R---GPRGAMIFF---RKGVKEINK 279 (286)
Q Consensus 261 ~---gp~gG~l~~---~~~~~~~~~ 279 (286)
. |.++|++.+ ++++.+.++
T Consensus 320 ~g~~G~R~G~~~~~~~~~~~~~~l~ 344 (500)
T 3tcm_A 320 YGECGKRGGYFEITGFSAPVREQIY 344 (500)
T ss_dssp TCCGGGCCEEEEEESCCTTHHHHHH
T ss_pred CCCCccceEEEEEeCCCHHHHHHHH
Confidence 3 667799988 677766554
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-20 Score=170.43 Aligned_cols=206 Identities=11% Similarity=0.096 Sum_probs=145.0
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
+.|........+.+.+++.+.+.. |+ .|+. ....++..++++++++++++++|++. .+++++|++ ++..
T Consensus 69 ~~lg~~~~~~~p~v~~~~~~~~~~-~~-~~~~---~~~~~g~~~l~~~l~~~la~~~g~~~-----~~~~~~ggt~a~~~ 138 (474)
T 1wyu_B 69 YPLGSCTMKYNPKLHEEAARLFAD-LH-PYQD---PRTAQGALRLMWELGEYLKALTGMDA-----ITLEPAAGAHGELT 138 (474)
T ss_dssp CCBTTTCCCCCCHHHHHHHHTTSS-CC-TTSC---GGGCHHHHHHHHHHHHHHHHHHTCSE-----EECCCSSHHHHHHH
T ss_pred cccccccccCCHHHHHHHHHHHHh-cC-CCCc---hhhChHHHHHHHHHHHHHHHHHCCCc-----eeecChHHHHHHHH
Confidence 455422223346666776654322 21 1111 01246778899999999999999875 366767776 6665
Q ss_pred HHHHh----cCCCC-----eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE
Q 023191 128 VYTAL----LKPHD-----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL 198 (286)
Q Consensus 128 ~l~a~----~~~Gd-----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~ 198 (286)
++.++ .++|| +|+++++.|+++.. .+...|.+++.++ .+ +++.+|+++|++++++ ++++
T Consensus 139 al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~--------~~~~~G~~vv~v~--~~-~~~~~d~~~L~~~i~~-~t~~ 206 (474)
T 1wyu_B 139 GILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPA--------TASMAGYQVREIP--SG-PEGEVDLEALKRELGP-HVAA 206 (474)
T ss_dssp HHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHH--------HHHHTTCEEEEEC--BC-TTSSBCHHHHHHHCST-TEEE
T ss_pred HHHHHHHHHHhcCCccCCCEEEEeCCcChhhHH--------HHHHCCCEEEEec--CC-CCCCcCHHHHHHhhCC-CceE
Confidence 44443 46888 99999977776653 3446676666665 44 4688999999999987 8999
Q ss_pred EEEcCCC-CCCc-cCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEEeCCCCCCCCCC------ceEEE
Q 023191 199 IVAGASA-YARL-YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVTTTTHKSLRGPR------GAMIF 269 (286)
Q Consensus 199 v~i~~~n-~g~~-~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp~------gG~l~ 269 (286)
|+++.+| +|.. .++++|+++|++||+++|+|++|+.+... ... +.. ++|++++|+||+|++|. .|+++
T Consensus 207 v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g--~~~-~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~ 283 (474)
T 1wyu_B 207 LMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMG--WAR-PGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVG 283 (474)
T ss_dssp EEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTT--TCC-HHHHTCSEEECCTTTTTCCCCTTSCCCCCCEE
T ss_pred EEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhcc--CCC-cccCCCcEEEEeCccccccCCCCCCCCeEEEE
Confidence 9998555 6766 69999999999999999999999766532 111 111 48999999999998763 49999
Q ss_pred Eecchhhhhc
Q 023191 270 FRKGVKEINK 279 (286)
Q Consensus 270 ~~~~~~~~~~ 279 (286)
+++++.+...
T Consensus 284 ~~~~l~~~l~ 293 (474)
T 1wyu_B 284 VKAHLAPYLP 293 (474)
T ss_dssp ECGGGGGGCC
T ss_pred EcHHHHHhCC
Confidence 9998766554
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=168.70 Aligned_cols=220 Identities=13% Similarity=0.096 Sum_probs=147.5
Q ss_pred cCceecCCCCCC-CHHHHHHhccccccCC-CCC---CCCCcccCCcchHHHHHHHHHHHHHHHCC----CCCCCcceeEE
Q 023191 47 KGLELIPSENFT-SVSVMQAVGSVMTNKY-SEG---YPGARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNVQ 117 (286)
Q Consensus 47 ~~i~L~~~e~~~-~~~v~~a~~~~l~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~~~~~v~ 117 (286)
+.++|..++++. ++.+.+++.+...... .++ ......|+...+..++++++.+++.+.+| ++++ +|+
T Consensus 37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~----~i~ 112 (428)
T 1iay_A 37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE----RVV 112 (428)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT----SCE
T ss_pred ceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh----hEE
Confidence 457888888864 5567777764321000 000 00011234444567899999999988888 4443 599
Q ss_pred eCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-CCCCCCHHHHHHHhhh--
Q 023191 118 SLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATL-- 193 (286)
Q Consensus 118 ~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~-- 193 (286)
+++|++ ++.+++.+++++||+|+++++.|.++... .....|..++.++ .+. +++.+|++++++.+++
T Consensus 113 ~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~-------~~~~~g~~~~~v~--~~~~~~~~~d~~~l~~~l~~~~ 183 (428)
T 1iay_A 113 MAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRD-------LRWRTGVQLIPIH--CESSNNFKITSKAVKEAYENAQ 183 (428)
T ss_dssp EEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH-------TTTTTCCEEEEEC--CCTTTTTCCCHHHHHHHHHHHH
T ss_pred EccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHH-------HHHhcCCEEEEee--cCCccCCcCCHHHHHHHHHHHH
Confidence 999998 88778999999999999999777665321 1124565555555 332 3568899999998864
Q ss_pred ---cCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC--CC-Cc-------ce--EEE
Q 023191 194 ---FRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PF-EY-------AD--VVT 253 (286)
Q Consensus 194 ---~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~-~~-------~D--~v~ 253 (286)
.++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+........... .+ .. .| +++
T Consensus 184 ~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~ 263 (428)
T 1iay_A 184 KSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIV 263 (428)
T ss_dssp HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred hcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEE
Confidence 268888887 766 777778 899999999999999999998764332111111 01 01 46 889
Q ss_pred eCCCCCCC--CCCceEEEE-ecchhhhhc
Q 023191 254 TTTHKSLR--GPRGAMIFF-RKGVKEINK 279 (286)
Q Consensus 254 ~s~~K~l~--gp~gG~l~~-~~~~~~~~~ 279 (286)
.|+||+|+ |.+.|++++ ++++.+..+
T Consensus 264 ~s~sK~~g~~Glr~G~~~~~~~~~~~~~~ 292 (428)
T 1iay_A 264 YSLSKDMGLPGFRVGIIYSFNDDVVNCAR 292 (428)
T ss_dssp EESTTTSSCGGGCEEEEEESCHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEEeCCHHHHHHHH
Confidence 99999984 334599998 455665544
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=166.93 Aligned_cols=189 Identities=17% Similarity=0.157 Sum_probs=133.8
Q ss_pred CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL 132 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~ 132 (286)
+.+++++.+++++.+.+.+.+ .++ .....+ +++.+++++|.+ ++++++|++ ++.+++.++
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~--~~~-------~~~~~~----l~~~la~~~~~~------~v~~~~ggt~al~~~~~~~ 67 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQ--LTQ-------GKRSLL----FEEALCEFLGVK------HALVFNSATSALLTLYRNF 67 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSC--CSS-------SHHHHH----HHHHHHHHHTCS------EEEEESCHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHcCc--ccC-------ChHHHH----HHHHHHHHhCCC------eEEEeCCHHHHHHHHHHHh
Confidence 566789999999999886522 111 233344 557778888876 288888888 888899999
Q ss_pred ---cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCc
Q 023191 133 ---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARL 209 (286)
Q Consensus 133 ---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~ 209 (286)
+++||+|+++++.|.++.. .+...|.+++.++ .+ +++.+|++++++.+++ ++++|+++.+ +|..
T Consensus 68 ~~~~~~gd~Vl~~~~~~~~~~~--------~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~ 134 (375)
T 2fnu_A 68 SEFSADRNEIITTPISFVATAN--------MLLESGYTPVFAG--IK-NDGNIDELALEKLINE-RTKAIVSVDY-AGKS 134 (375)
T ss_dssp SCCCTTSCEEEECSSSCTHHHH--------HHHHTTCEEEECC--BC-TTSSBCGGGSGGGCCT-TEEEEEEECG-GGCC
T ss_pred cccCCCCCEEEECCCccHhHHH--------HHHHCCCEEEEec--cC-CCCCCCHHHHHhhcCc-CceEEEEeCC-cCCc
Confidence 8999999999977776644 2334565555454 55 3347999999999887 8898877644 8888
Q ss_pred cCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEE-e-cchhh
Q 023191 210 YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFF-R-KGVKE 276 (286)
Q Consensus 210 ~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~-~-~~~~~ 276 (286)
.|+++|.++|++||+++|+|++|+.|....+.....+..+++.++|+||++ || | |++++ + +++.+
T Consensus 135 ~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~ 202 (375)
T 2fnu_A 135 VEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPI-TT-AEGGAVVTNDSELHE 202 (375)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSS-CC-SSCEEEEESCHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHH
Confidence 999999999999999999999998876543211111111444456666988 55 5 77766 4 34543
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-20 Score=166.52 Aligned_cols=207 Identities=16% Similarity=0.151 Sum_probs=145.8
Q ss_pred cCceecCCCC------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH------CC--CCCCCc
Q 023191 47 KGLELIPSEN------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA------FR--LDPEKW 112 (286)
Q Consensus 47 ~~i~L~~~e~------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~g--~~~~~~ 112 (286)
+.++|..+.+ ++++.+++++.+.+......+ |+...+..++++++.+++.+. .| ++++
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~-- 105 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNG------YFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKD-- 105 (416)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSS------CCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG--
T ss_pred CeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCC------cCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcc--
Confidence 4688887752 468999999988875421112 333355678888888887732 33 3443
Q ss_pred ceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHh
Q 023191 113 GVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 191 (286)
Q Consensus 113 ~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i 191 (286)
+|++|+|++ ++.+++.+++++||+|+++++.|.++.. .+...|.+++.++++.+ +++.+|+++|++.+
T Consensus 106 --~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~--------~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l 174 (416)
T 1bw0_A 106 --NVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET--------VCKAYGIGMHFYNCRPE-NDWEADLDEIRRLK 174 (416)
T ss_dssp --GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH--------HHHHTTCEEEEEEEEGG-GTTEECHHHHHHHC
T ss_pred --eEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHH--------HHHHcCcEEEEeecCcc-cCCCCCHHHHHHHh
Confidence 599999999 8887899999999999999966665432 34456666666654322 24679999999999
Q ss_pred hhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccC----CCCC--CCC--cceEEEeCCCC
Q 023191 192 TLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAG----VIPS--PFE--YADVVTTTTHK 258 (286)
Q Consensus 192 ~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~----~~~~--~~~--~~D~v~~s~~K 258 (286)
++ ++++++++ ++| +|...+ +++|+++|++||+++|+|++|+....... .... .+. ..++++.|++|
T Consensus 175 ~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK 253 (416)
T 1bw0_A 175 DD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAK 253 (416)
T ss_dssp CT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTT
T ss_pred cc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchh
Confidence 87 78888886 766 677777 99999999999999999999876322211 1111 111 13477899999
Q ss_pred CCCCC--CceEEEEecc
Q 023191 259 SLRGP--RGAMIFFRKG 273 (286)
Q Consensus 259 ~l~gp--~gG~l~~~~~ 273 (286)
+|+.| +.|+++++++
T Consensus 254 ~~~~~Glr~G~~~~~~~ 270 (416)
T 1bw0_A 254 NLVVPGWRLGWLLYVDP 270 (416)
T ss_dssp TTSCGGGCCEEEEEECT
T ss_pred hCCCCCceEEEEEeeCc
Confidence 97544 4699998874
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=172.03 Aligned_cols=198 Identities=16% Similarity=0.081 Sum_probs=141.3
Q ss_pred CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh---
Q 023191 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--- 132 (286)
Q Consensus 57 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~--- 132 (286)
+.++.+++++.....+.. ...|.......++|+.+++++++++|++... .+++|+|++ ++..++.+.
T Consensus 111 ~~~~~v~~~~~~~~~n~~------~~~~~~~~~~~~le~~~~~~la~~~g~~~~~---~~~~t~ggt~a~~~al~~ar~~ 181 (497)
T 2qma_A 111 PLMPAVAAEAMIAALNQS------MDSWDQASSATYVEQKVVNWLCDKYDLSEKA---DGIFTSGGTQSNQMGLMLARDW 181 (497)
T ss_dssp CBHHHHHHHHHHHHHCCC------TTCGGGCHHHHHHHHHHHHHHHHHTTCCTTC---EEEEESSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhccc------ccchhhChHHHHHHHHHHHHHHHHhCCCCCC---CeEEcCCchHHHHHHHHHHHHH
Confidence 346777777655443311 1123444567899999999999999996533 588889888 777666662
Q ss_pred -c---------CC------CC-eEEeccCCCCcccCcccccccccccccee---eeEEEecccCCCCCCCCHHHHHHHhh
Q 023191 133 -L---------KP------HD-RIMALDLPHGGHLSHGYQTDTKKISAVSI---FFETMPYRLNESTGYIDYDQLEKSAT 192 (286)
Q Consensus 133 -~---------~~------Gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~d~e~l~~~i~ 192 (286)
+ .+ |+ .|+++...|.++.... ...|. .++.+| .+ +++.+|+++|+++++
T Consensus 182 ~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~--------~~~g~g~~~v~~v~--~~-~~~~~d~~~L~~~i~ 250 (497)
T 2qma_A 182 IADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSA--------SWMGLGEKAVMTVD--AN-ADGTMDITKLDEVIA 250 (497)
T ss_dssp HHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHH--------HHTTSCGGGEEEEC--BC-TTSSBCGGGHHHHHH
T ss_pred HHHhhcccchhhcccccccCCeEEEECCCchHHHHHHH--------HHcCCCcccEEEEe--cC-CCCcCCHHHHHHHHH
Confidence 3 13 46 7888887777664322 23332 455565 44 568999999999997
Q ss_pred hc---CCc--EEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCC--CCCCCcceEEEeCCCCCCCCC
Q 023191 193 LF---RPK--LIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVI--PSPFEYADVVTTTTHKSLRGP 263 (286)
Q Consensus 193 ~~---~tk--~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~--~~~~~~~D~v~~s~~K~l~gp 263 (286)
+. .++ +|+++ ++| +|...|+++|+++|++||+++|+|+||+.+....+.. ...+..+|++++|+|||+++|
T Consensus 251 ~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p 330 (497)
T 2qma_A 251 QAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQT 330 (497)
T ss_dssp HHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCC
T ss_pred HHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCC
Confidence 62 244 66666 565 7899999999999999999999999998877654411 112235899999999999999
Q ss_pred Cc-eEEEEecch
Q 023191 264 RG-AMIFFRKGV 274 (286)
Q Consensus 264 ~g-G~l~~~~~~ 274 (286)
.+ |+++++++.
T Consensus 331 ~~~G~l~~~~~~ 342 (497)
T 2qma_A 331 ISCGALLVNDKS 342 (497)
T ss_dssp SSCEEEEESCGG
T ss_pred cceEEEEEeCHH
Confidence 88 999998753
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-20 Score=165.08 Aligned_cols=193 Identities=16% Similarity=0.145 Sum_probs=137.3
Q ss_pred cCceecCCC--CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSE--NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e--~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
..+++..++ .++++.+++++.. + + ....+++.+++.+++++|++.. .++++++|++
T Consensus 29 ~v~~~~~~~~~~~~~~~v~~a~~~-----~--~-----------~~~~~~~~~~~~~a~~~g~~~~---~~~~~~~ggt~ 87 (374)
T 2aeu_A 29 ALYDLSGLSGGFLIDEKDKALLNT-----Y--I-----------GSSYFAEKVNEYGLKHLGGDEN---DKCVGFNRTSS 87 (374)
T ss_dssp GCEECSSCCCCCCCCHHHHHHHTS-----T--T-----------HHHHHHHHHHHHHHHHHTCCTT---EEEEEESSHHH
T ss_pred ceeeecccCCCCCCCHHHHHHHHH-----h--c-----------CchHHHHHHHHHHHHHhCCCCc---ceEEEEcChHH
Confidence 467877654 4679999999961 2 1 1134556677888889998421 2477777777
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcE-EEEc
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKL-IVAG 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~-v~i~ 202 (286)
++.+++.++ |||+|+++++.|++++.... .+...|.+++.+ .|++++++. ++ +|++ |+++
T Consensus 88 a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-----~~~~~g~~~~~v----------~d~~~l~~~-~~-~~~~~v~~~ 148 (374)
T 2aeu_A 88 AILATILAL--KPKKVIHYLPELPGHPSIER-----SCKIVNAKYFES----------DKVGEILNK-ID-KDTLVIITG 148 (374)
T ss_dssp HHHHHHHHH--CCSEEEEECSSSSCCTHHHH-----HHHHTTCEEEEE----------SCHHHHHTT-CC-TTEEEEEEC
T ss_pred HHHHHHHhC--CCCEEEEecCCCCccHHHHH-----HHHHcCcEEEEe----------CCHHHHHhc-CC-CccEEEEEc
Confidence 887788877 99999999988877654211 223445444332 288999888 55 8999 8887
Q ss_pred -CCC-CC-CccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEEeCCCCCCCCCCceEEEEecchhhhh
Q 023191 203 -ASA-YA-RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVTTTTHKSLRGPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 203 -~~n-~g-~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~ 278 (286)
++| +| ...++++|.++|++||+++|+|++|+.+.........++. ++|++++|+||+++||++|++++++++.+..
T Consensus 149 ~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l 228 (374)
T 2aeu_A 149 STMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKI 228 (374)
T ss_dssp BCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHH
T ss_pred cCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECHHHHHHH
Confidence 666 56 6789999999999999999999998765310011111111 4799999999999999889999998877655
Q ss_pred c
Q 023191 279 K 279 (286)
Q Consensus 279 ~ 279 (286)
+
T Consensus 229 ~ 229 (374)
T 2aeu_A 229 Y 229 (374)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=163.96 Aligned_cols=204 Identities=17% Similarity=0.185 Sum_probs=140.7
Q ss_pred cCceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 47 KGLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 47 ~~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
..|+|..+.+ .+++.+++++.+.+.. +..+ |+.. .+.+++++++++++| .. .+|++++|++ +
T Consensus 8 ~~id~~~~~~~~~~~~v~~a~~~~~~~-~~~~------~~~~----~~~~~l~~~la~~~g-~~----~~v~~~~~gt~a 71 (356)
T 1v72_A 8 PALGFSSDNIAGASPEVAQALVKHSSG-QAGP------YGTD----ELTAQVKRKFCEIFE-RD----VEVFLVPTGTAA 71 (356)
T ss_dssp CCCBCSCGGGCCCCHHHHHHHHHTTSS-CCCS------TTCS----HHHHHHHHHHHHHHT-SC----CEEEEESCHHHH
T ss_pred ceEeeccCCccCCCHHHHHHHHhhccC-cccc------cccc----hHHHHHHHHHHHHhC-CC----CcEEEeCCccHH
Confidence 4567765533 4689999999876532 2111 2222 344556688888888 32 2578878877 8
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccc--eeeeEEEecccCCCCCCCCHHHHHH-Hhhhc------C
Q 023191 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAV--SIFFETMPYRLNESTGYIDYDQLEK-SATLF------R 195 (286)
Q Consensus 125 ~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~~~~d~e~l~~-~i~~~------~ 195 (286)
+.+++.++++|||+|+++++.|.++.... .+... |.+++.++ .+ ++.+|+++|++ ++++. +
T Consensus 72 ~~~al~~~~~~gd~vi~~~~~~~~~~~~~------~~~~~~~g~~~~~v~--~~--~~~~d~~~l~~~~i~~~~~~~~~~ 141 (356)
T 1v72_A 72 NALCLSAMTPPWGNIYCHPASHINNDECG------APEFFSNGAKLMTVD--GP--AAKLDIVRLRERTREKVGDVHTTQ 141 (356)
T ss_dssp HHHHHHTSCCTTEEEEECTTSHHHHSSTT------HHHHHTTSCEEEECC--CG--GGCCCHHHHHHHTTSSTTCTTSCE
T ss_pred HHHHHHHhcCCCCEEEEcCccchhhhhch------HHHHHhCCcEEEEec--CC--CCeEcHHHHHHHhhhcchhhccCC
Confidence 88788999999999999986665543320 12333 65555444 33 36899999999 88652 5
Q ss_pred CcEEEEc-CCCCCC---ccCHHHHHHHHHhcCCEEEEecccccccc-ccCCCCCCC---CcceEEEeCCCCCCCCCCc-e
Q 023191 196 PKLIVAG-ASAYAR---LYDYERIRKVCNKQKAIMLADMAHISGLV-AAGVIPSPF---EYADVVTTTTHKSLRGPRG-A 266 (286)
Q Consensus 196 tk~v~i~-~~n~g~---~~~l~~I~~ia~~~~~~vivD~a~~~g~~-~~~~~~~~~---~~~D~v~~s~~K~l~gp~g-G 266 (286)
+++|+++ ++|+|. ..++++|.++|++||+++|+|++|..+.. ..+.....+ .++|++++|+||+ ++|.| |
T Consensus 142 ~~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g 220 (356)
T 1v72_A 142 PACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEA 220 (356)
T ss_dssp EEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEE
T ss_pred ceEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccE
Confidence 7899887 556786 55688999999999999999999875422 112222222 1488999999998 67888 7
Q ss_pred EEEEecchhhh
Q 023191 267 MIFFRKGVKEI 277 (286)
Q Consensus 267 ~l~~~~~~~~~ 277 (286)
++++++++.+.
T Consensus 221 ~~~~~~~~~~~ 231 (356)
T 1v72_A 221 IVLFNTSLATE 231 (356)
T ss_dssp EEESSGGGHHH
T ss_pred EEEECHHHHhh
Confidence 88888876654
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-21 Score=172.56 Aligned_cols=191 Identities=13% Similarity=0.113 Sum_probs=136.9
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
+++..+.+..++.+++++.+.+...+ |.......++| +.+++++|.+. +++++|++ ++..
T Consensus 6 ~~l~~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~------~i~~~sgt~al~~ 66 (373)
T 3frk_A 6 ASFKPMHDEIEYEIKFKFEEIYKRNW---------FILGDEDKKFE----QEFADYCNVNY------CIGCGNGLDALHL 66 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTC---------CSSSHHHHHHH----HHHHHHHTSSE------EEEESCHHHHHHH
T ss_pred cCCCcccCCCCHHHHHHHHHHHHCCC---------ccCCchHHHHH----HHHHHHhCCCe------EEEeCCHHHHHHH
Confidence 34443444457788888888776522 12234455555 77777788752 45545555 8888
Q ss_pred HHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-
Q 023191 128 VYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA- 205 (286)
Q Consensus 128 ~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n- 205 (286)
++.++ +++||+|+++.+.|.++.. .+...|.+++.++ .+++++.+|++++++++++ ++++|++ +|
T Consensus 67 ~l~~l~~~~gd~Vi~~~~~~~~~~~--------~~~~~g~~~~~~~--~~~~~~~~d~~~l~~~l~~-~~~~v~~--~n~ 133 (373)
T 3frk_A 67 ILKGYDIGFGDEVIVPSNTFIATAL--------AVSYTGAKPIFVE--PDIRTYNIDPSLIESAITE-KTKAIIA--VHL 133 (373)
T ss_dssp HHHHTTCCTTCEEEEETTSCTHHHH--------HHHHHSCEEEEEC--EETTTTEECGGGTGGGCCT-TEEEEEE--ECC
T ss_pred HHHHcCCCCcCEEEECCCCcHHHHH--------HHHHcCCEEEEEe--ccccccCcCHHHHHHhcCC-CCeEEEE--ECC
Confidence 99999 9999999999988777654 2345566565554 5545688999999999987 8888884 34
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeC--CCCCCCC-CCceEEEEecc
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTT--THKSLRG-PRGAMIFFRKG 273 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s--~~K~l~g-p~gG~l~~~~~ 273 (286)
+|...++++|.++|+++|+++|+|++|+.|....+.... ...|++++| .||++++ +.||+++++++
T Consensus 134 ~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~--~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~ 202 (373)
T 3frk_A 134 YGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVG--SLGDAAGFSFYPAKNLGSLGDGGAVVTNDK 202 (373)
T ss_dssp TTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCSSSCEEEEESCH
T ss_pred CcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEecc--ccccEEEEeCcCCCccCccceeEEEEeCCH
Confidence 788899999999999999999999999987663221111 126888888 5599987 56799988764
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=169.59 Aligned_cols=206 Identities=15% Similarity=0.157 Sum_probs=139.6
Q ss_pred CceecCCCC-CCCHHHHHHhccccccCCCCCCCCCc-ccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-H
Q 023191 48 GLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGAR-YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-S 124 (286)
Q Consensus 48 ~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a 124 (286)
.+.|+.+.+ +.|+.+++++.+.+.+.+ +++... ++. .+.....+++++++++++|++++ +|++++|++ +
T Consensus 29 ~~yld~~~~~~~~~~v~~a~~~~l~~~~--~~~~~~~~~~--~~~~~~~~~l~~~la~~~g~~~~----~v~~~~g~t~a 100 (416)
T 1qz9_A 29 VIYLDGNSLGARPVAALARAQAVIAEEW--GNGLIRSWNS--AGWRDLSERLGNRLATLIGARDG----EVVVTDTTSIN 100 (416)
T ss_dssp CEECCTTTSCCCBTTHHHHHHHHHHTCC--CCCGGGHHHH--TSGGGHHHHHHHHHHTTTTCCTT----SEEECSCHHHH
T ss_pred eEeecCCCcCCCcHHHHHHHHHHHHHHH--hccCccccch--hhHHHHHHHHHHHHHHHcCCCcc----cEEEeCChhHH
Confidence 456665544 568889999988886533 221110 111 01123344567899999999764 488999988 6
Q ss_pred HHHHHHHhc------CCCCeEEec-cCCCCcccCccccccccccccc--eeeeEEEecccCCCCCCCCHHHHHHHhhhcC
Q 023191 125 NFQVYTALL------KPHDRIMAL-DLPHGGHLSHGYQTDTKKISAV--SIFFETMPYRLNESTGYIDYDQLEKSATLFR 195 (286)
Q Consensus 125 ~~~~l~a~~------~~Gd~Vl~~-~~~~~~~~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~ 195 (286)
+.+++.+++ ++||+|++. .+.|+++..+.... .... |.+++.+++ +++|++++++ +
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~----~~~~~~g~~~~~v~~----------~~~l~~~i~~-~ 165 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGL----ADMLQQGYTLRLVDS----------PEELPQAIDQ-D 165 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHH----HHHHCSSCEEEEESS----------GGGHHHHCST-T
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHH----HHHhcCCceEEEeCc----------HHHHHHHhCC-C
Confidence 655777766 899985554 45666543322110 1112 544444432 6788888887 8
Q ss_pred CcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCC-CCCCc-eEEEEe
Q 023191 196 PKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL-RGPRG-AMIFFR 271 (286)
Q Consensus 196 tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l-~gp~g-G~l~~~ 271 (286)
+++|+++ ++| +|...|+++|.++|++||+++|+|++|+.|....+.... ++|++++|+||++ +|+++ |+++++
T Consensus 166 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~~g~~~~g~l~~~ 242 (416)
T 1qz9_A 166 TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA---GADYAIGCTYKYLNGGPGSQAFVWVS 242 (416)
T ss_dssp EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCSEEEECSSSTTCCCTTCCCEEEEC
T ss_pred ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhc---CCCEEEecCcccCCCCCCCeEEEEEC
Confidence 9999887 555 678899999999999999999999999876554322111 3899999999997 56787 999999
Q ss_pred cchhhhhc
Q 023191 272 KGVKEINK 279 (286)
Q Consensus 272 ~~~~~~~~ 279 (286)
+++.+..+
T Consensus 243 ~~~~~~l~ 250 (416)
T 1qz9_A 243 PQLCDLVP 250 (416)
T ss_dssp TTTTTTSC
T ss_pred HHHHhccC
Confidence 88765444
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-20 Score=166.19 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=128.8
Q ss_pred CCcchHHHHHHHHHHHHHHHC-CCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccc
Q 023191 85 GGNEYIDMAESLCQKRALEAF-RLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS 162 (286)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (286)
+...+..+++ +.+++++ +++++ +|++++|++ ++.+++.++++|||+|+++.+.|.++.. .+.
T Consensus 60 ~~~~g~~~l~----~~la~~~~~~~~~----~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~--------~~~ 123 (375)
T 3op7_A 60 GWIEGSPAFK----KSVSQLYTGVKPE----QILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD--------IPK 123 (375)
T ss_dssp CCTTCCHHHH----HHHHTTSSSCCGG----GEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH--------HHH
T ss_pred CCCCChHHHH----HHHHHHhccCChh----hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHH
Confidence 3334556666 5566665 45654 499999988 8888999999999999999966655432 344
Q ss_pred cceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccccc
Q 023191 163 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLV 237 (286)
Q Consensus 163 ~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~ 237 (286)
..|.+++.++++.+ +++.+|++++++++++ ++++|+++ ++| +|...+ +++|.++|++||+++|+|++|+....
T Consensus 124 ~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~ 201 (375)
T 3op7_A 124 SLGAEVDLWQIEEE-NGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE 201 (375)
T ss_dssp HTTCEEEEEEEEGG-GTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS
T ss_pred HcCCEEEEEecccc-CCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 56666666664422 4567999999999987 89999997 656 677788 99999999999999999999875432
Q ss_pred ccCCCCCC--CCcceEEEeCCCCCCC--CCCceEEEEecchhhhhccC
Q 023191 238 AAGVIPSP--FEYADVVTTTTHKSLR--GPRGAMIFFRKGVKEINKQG 281 (286)
Q Consensus 238 ~~~~~~~~--~~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~~~~ 281 (286)
. .. ... ..+.++++.|++|+++ |.+.|++++++++.+..++.
T Consensus 202 ~-~~-~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~ 247 (375)
T 3op7_A 202 L-DV-PSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDY 247 (375)
T ss_dssp S-CC-CCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTT
T ss_pred c-CC-CchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHH
Confidence 2 11 110 0125588999999985 33459999988887766644
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=169.22 Aligned_cols=207 Identities=11% Similarity=0.062 Sum_probs=139.7
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC-CCCCCcceeEEeCCChH-HHHHHHHHhcCCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP-SNFQVYTALLKPH 136 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g-~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~G 136 (286)
|..+.+++.+.+.... + .....|+...+..++++++.+++++.+| ++.+. .+|++|+|++ ++..++.+++++|
T Consensus 103 P~~~~~~~~~~l~~~~--~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~--~~i~~t~G~~~ai~~~~~~l~~~g 177 (498)
T 3ihj_A 103 PEDAKKRARRILQACG--G-NSLGSYSASQGVNCIREDVAAYITRRDGGVPADP--DNIYLTTGASDGISTILKILVSGG 177 (498)
T ss_dssp CHHHHHHHHHHHHHC-------------CCSCHHHHHHHHHHHHHHTTTCCCCG--GGEEEESSHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHhcc--C-CCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCc--ccEEEcCCHHHHHHHHHHHHcCCC
Confidence 5556666666665411 0 0112355667788999999999998885 53222 3699999999 8887889999987
Q ss_pred C----eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc----CCcEEEEc-CCC-C
Q 023191 137 D----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF----RPKLIVAG-ASA-Y 206 (286)
Q Consensus 137 d----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~----~tk~v~i~-~~n-~ 206 (286)
| .|+++.|.|+.+ ...+...|..++.++++-+ ++|.+|+++|++++++. ++|+|+++ |+| +
T Consensus 178 d~~~d~Vlv~~p~y~~~--------~~~~~~~g~~~v~~~~~~~-~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPT 248 (498)
T 3ihj_A 178 GKSRTGVMIPIPQYPLY--------SAVISELDAIQVNYYLDEE-NCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPT 248 (498)
T ss_dssp GGGSEEEEEEESCCTHH--------HHHHHHTTCEEEEEECBGG-GTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTT
T ss_pred CCCCCEEEEeCCCchhH--------HHHHHHcCCEEEEeecccc-ccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCC
Confidence 6 999999555444 3355567766655654322 36799999999999874 48888886 666 6
Q ss_pred CCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCc------------c-eEEEeCCCCCC---CCCCceE
Q 023191 207 ARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEY------------A-DVVTTTTHKSL---RGPRGAM 267 (286)
Q Consensus 207 g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~------------~-D~v~~s~~K~l---~gp~gG~ 267 (286)
|.+.+ +++|+++|++|++++|+|++|.......+.....+.. . -+++.|++|+| +|.++|+
T Consensus 249 G~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~ 328 (498)
T 3ihj_A 249 GQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGY 328 (498)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEE
T ss_pred CCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEE
Confidence 76654 6789999999999999999976554432211111110 1 26688999998 3777799
Q ss_pred EEE---ecchhhhhc
Q 023191 268 IFF---RKGVKEINK 279 (286)
Q Consensus 268 l~~---~~~~~~~~~ 279 (286)
+.+ +.++.+.++
T Consensus 329 ~~~~~~~~~l~~~l~ 343 (498)
T 3ihj_A 329 MEVINLHPEIKGQLV 343 (498)
T ss_dssp EEEESCCHHHHHHHH
T ss_pred EEEecCCHHHHHHHH
Confidence 984 556665554
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-20 Score=167.51 Aligned_cols=195 Identities=13% Similarity=0.157 Sum_probs=141.5
Q ss_pred eecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCC-cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 50 ELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGG-NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 50 ~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
+|..+++. +|+.+++++.+.+...+ |+. ..+..+++ +.+++++|.+ +|++++|++ ++
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~~~---------y~~~~~~~~~l~----~~la~~~~~~------~v~~~~ggt~al 80 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDSQW---------LSNGGPLVREFE----ERVAGLAGVR------HAVATCNATAGL 80 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHHTC---------CSSSCHHHHHHH----HHHHHHHTSS------EEEEESCHHHHH
T ss_pred cccccCCCCCChHHHHHHHHHHHhcCC---------cccCCHHHHHHH----HHHHHHhCCC------eEEEeCCHHHHH
Confidence 56667764 46689999988775421 232 34555666 6666677764 388889988 88
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA 205 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n 205 (286)
.+++.++. +||+|+++++.|.++.. .+...|.+++.++ ++++++.+|+++|++.+++ ++++|+++. .
T Consensus 81 ~~~l~~l~-~gd~Vlv~~~~~~~~~~--------~~~~~G~~~~~v~--~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~ 147 (424)
T 2po3_A 81 QLLAHAAG-LTGEVIMPSMTFAATPH--------ALRWIGLTPVFAD--IDPDTGNLDPDQVAAAVTP-RTSAVVGVH-L 147 (424)
T ss_dssp HHHHHHHT-CCSEEEEESSSCTHHHH--------HHHHTTCEEEEEC--BCTTTSSBCHHHHGGGCCT-TEEEEEEEC-G
T ss_pred HHHHHHcC-CCCEEEECCCccHHHHH--------HHHHcCCEEEEEe--cCCCcCCcCHHHHHHhhCc-CCcEEEEEC-C
Confidence 87777774 79999999977766543 3345676565554 5544688999999999987 899998853 3
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCC--CCCCCCCceEEEEe-cchhhhh
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH--KSLRGPRGAMIFFR-KGVKEIN 278 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~--K~l~gp~gG~l~~~-~~~~~~~ 278 (286)
+|...++++|.++|+++|+++|+|++|+.|....+.... ...|++++|+| |+++|+++|+++++ +++.+..
T Consensus 148 tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~--~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l 221 (424)
T 2po3_A 148 WGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAG--SLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARI 221 (424)
T ss_dssp GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecc--cccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHH
Confidence 677889999999999999999999999877653221111 12588888887 99988888999998 4655443
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-21 Score=170.75 Aligned_cols=195 Identities=17% Similarity=0.172 Sum_probs=138.0
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
+++..+.++.++++++++.+.+...+ |.......+++ +.+++++|.+. +++++|++ ++.+
T Consensus 5 ~~~~~~~~~~~~~v~~a~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~------~~~~~sGt~al~~ 65 (367)
T 3nyt_A 5 IDLKNQQARIKDKIDAGIQRVLRHGQ---------YILGPEVTELE----DRLADFVGAKY------CISCANGTDALQI 65 (367)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHCC---------CSSCHHHHHHH----HHHHHHHTCSE------EEEESCHHHHHHH
T ss_pred ccccccccccCHHHHHHHHHHHhcCC---------ccCChHHHHHH----HHHHHHhCCCc------EEEeCCHHHHHHH
Confidence 44444444567888888888776522 12234455555 77777788763 45545555 8887
Q ss_pred HHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-
Q 023191 128 VYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA- 205 (286)
Q Consensus 128 ~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n- 205 (286)
++.++ +++||+|+++.+.|.++.. .+...|.+++.+ +.+++++.+|++++++++++ ++++|+ +.|
T Consensus 66 al~~~~~~~gd~Vi~~~~~~~~~~~--------~~~~~G~~~~~~--~~~~~~~~~d~~~l~~~i~~-~~~~v~--~~~~ 132 (367)
T 3nyt_A 66 VQMALGVGPGDEVITPGFTYVATAE--------TVALLGAKPVYV--DIDPRTYNLDPQLLEAAITP-RTKAII--PVSL 132 (367)
T ss_dssp HHHHTTCCTTCEEEEESSSCTHHHH--------HHHHTTCEEEEE--CBCTTTCSBCGGGTGGGCCT-TEEEEC--CBCG
T ss_pred HHHHhCCCCcCEEEECCCccHHHHH--------HHHHcCCEEEEE--ecCCccCCcCHHHHHHhcCc-CCcEEE--eeCC
Confidence 88998 8999999999977766543 334556555555 45545689999999999977 888887 344
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCC--CCCCCC-CCceEEEEec-chhhh
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTT--HKSLRG-PRGAMIFFRK-GVKEI 277 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~--~K~l~g-p~gG~l~~~~-~~~~~ 277 (286)
+|...++++|.++|++||+++|+|++|+.|....+.....+ .|++++|+ ||++++ +.||++++++ ++.+.
T Consensus 133 ~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~--~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~ 206 (367)
T 3nyt_A 133 YGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNL--STVACTSFFPSAPLGCYGDGGAIFTNDDELATA 206 (367)
T ss_dssp GGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSS--SSEEEEECCTTSSSCCSSCCEEEEESCHHHHHH
T ss_pred ccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCC--CCEEEEECCCCCcCCCcCceeEEEeCCHHHHHH
Confidence 68889999999999999999999999998766432211111 38998885 899977 4578888865 45443
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-20 Score=166.82 Aligned_cols=206 Identities=9% Similarity=0.046 Sum_probs=141.1
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCC--CCcccCCcchHHHHHHHHHHHHHHHCCCCCCCccee-EEeCCChH
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYP--GARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVN-VQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~-v~~~sG~~ 123 (286)
..+++.++..++|+.+++++.+.+.+....+.. ...++ .....++.+++++++++++|++.+. + +++|+|++
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~g~~~~~---~~i~~t~g~t 78 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR--GAVYEAVHNEAQARLLALLGNPTGY---KVLFIQGGAS 78 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT--SHHHHHHHHHHHHHHHHHTTCCSSE---EEEEESSHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCC--cHHHHHHHHHHHHHHHHHhCCCCCc---EEEEECCCch
Confidence 356788888889999999999888652211111 00111 2334567788999999999996531 3 57788888
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC-CCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
++.+++.++++|||+|+++++.+.++. . ...+...| +++.++++.+. .+..+|.++++ +++ +||+|++
T Consensus 79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~----~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-~t~~v~~ 148 (362)
T 2c0r_A 79 TQFAMIPMNFLKEGQTANYVMTGSWASK--A----LKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-NAAYLHL 148 (362)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHH--H----HHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-TEEEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEEecCcHhHH--H----HHHHHHhC-CeEEEecccccccccCCCHHHcc--cCC-CcCEEEE
Confidence 888899999999999998764322210 0 11234456 67777654211 22346776654 565 8999988
Q ss_pred c-CCC-CCCc-cCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 202 G-ASA-YARL-YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 202 ~-~~n-~g~~-~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
+ ++| +|.. .++++| +|+++++|++|+.|....+ +...|++++|+||++ ||.| |++++++++.+.
T Consensus 149 ~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~-----~~~~d~~~~s~~K~~-g~~G~G~l~~~~~~~~~ 216 (362)
T 2c0r_A 149 TSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFD-----LNQFGLVYAGAQKNL-GPSGVTVVIVREDLVAE 216 (362)
T ss_dssp ESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCC-----GGGCSEEEEETTTTT-CCSSCEEEEEEGGGSSS
T ss_pred eCCcCccceeccccccc------CCCEEEEEChhhccCCccc-----hhHCcEEEEeccccc-cCcCcEEEEEcHHHHhh
Confidence 7 555 6653 577776 8999999999988765432 222589999999999 5888 999999987655
Q ss_pred hc
Q 023191 278 NK 279 (286)
Q Consensus 278 ~~ 279 (286)
++
T Consensus 217 l~ 218 (362)
T 2c0r_A 217 SP 218 (362)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=167.05 Aligned_cols=192 Identities=11% Similarity=0.070 Sum_probs=140.1
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHH
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNF 126 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~ 126 (286)
..++|..+.+..++ +++++.+.+.... |.......+++ +.++++++.+. .+++++|+.++.
T Consensus 7 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~ 67 (374)
T 3uwc_A 7 PYSYLERQFADIEP-YLNDLREFIKTAD---------FTLGAELEKFE----KRFAALHNAPH-----AIGVGTGTDALA 67 (374)
T ss_dssp CSCCHHHHTSSCHH-HHHHHHHHHHHTC---------CSSCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHH
T ss_pred eeeccccCCCCchH-HHHHHHHHHHcCC---------cccChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHH
Confidence 35677777777777 8888888775421 22334455555 77888888763 355555544888
Q ss_pred HHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 023191 127 QVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA 205 (286)
Q Consensus 127 ~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n 205 (286)
+++.++ +++||+|+++.+.|.++.. .+...|.+++.++ .+ +++.+|++++++.+++ ++++|+ ++|
T Consensus 68 ~~~~~~~~~~gd~v~~~~~~~~~~~~--------~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~~~~-~~~~v~--~~n 133 (374)
T 3uwc_A 68 MSFKMLNIGAGDEVITCANTFIASVG--------AIVQAGATPVLVD--SE-NGYVIDPEKIEAAITD-KTKAIM--PVH 133 (374)
T ss_dssp HHHHHTTCCTTCEEEEESSSCHHHHH--------HHHHTTCEEEEEC--BC-TTSSBCGGGTGGGCCT-TEEEEC--CBC
T ss_pred HHHHHcCCCCCCEEEECCCccHHHHH--------HHHHcCCEEEEEe--cC-CCCCcCHHHHHHhCCC-CceEEE--EeC
Confidence 799999 9999999999977766543 3445666665555 44 5688999999999987 888887 455
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCC--CCCCC-CCceEEEEecc
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH--KSLRG-PRGAMIFFRKG 273 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~--K~l~g-p~gG~l~~~~~ 273 (286)
+|...++++|.++|++||+++|+|++|+.|......... ...|++++|+| |++++ +.||+++++++
T Consensus 134 ~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~--~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~ 203 (374)
T 3uwc_A 134 YTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVG--SWGQFACFSLHPLKNLNVWSDAGVIITHSD 203 (374)
T ss_dssp GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSSSEEEEECSSSSSSCCSSCCEEEEESCH
T ss_pred CcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeecc--ccccEEEEeCCCCCcCCccceeEEEEeCCH
Confidence 778889999999999999999999999887653221111 12699999987 99987 45688888763
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-20 Score=167.79 Aligned_cols=199 Identities=17% Similarity=0.108 Sum_probs=142.8
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHH
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNF 126 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~ 126 (286)
..++|..+++..++.+++++.+.+... .| .......+++ +.+++++|.+. .+++++|+.++.
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~---~y------~~~~~~~~l~----~~la~~~~~~~-----~v~~~~Gt~a~~ 92 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG---RY------LLGPELEGFE----AEFAAYCETDH-----AVGVNSGMDALQ 92 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT---CC------SSSHHHHHHH----HHHHHHTTSSE-----EEEESCHHHHHH
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC---CC------CCchhHHHHH----HHHHHHHCCCe-----EEEecCHHHHHH
Confidence 567887777766789999998877541 11 2223444444 77788888762 466666655888
Q ss_pred HHHHHh-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC
Q 023191 127 QVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA 205 (286)
Q Consensus 127 ~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n 205 (286)
.++.++ +++||+|+++.+.|.++.. .+...|.+++.++ .+++++.+|++++++.+++ ++++|++++ .
T Consensus 93 ~~l~~~~~~~gd~vl~~~~~~~~~~~--------~~~~~g~~~~~~~--~~~~~~~~d~~~l~~~i~~-~~~~v~~~n-~ 160 (399)
T 2oga_A 93 LALRGLGIGPGDEVIVPSHTYIASWL--------AVSATGATPVPVE--PHEDHPTLDPLLVEKAITP-RTRALLPVH-L 160 (399)
T ss_dssp HHHHHTTCCTTCEEEEESSSCTHHHH--------HHHHTTCEEEEEC--BCSSSSSBCHHHHHHHCCT-TEEEECCBC-G
T ss_pred HHHHHhCCCCcCEEEECCCccHHHHH--------HHHHCCCEEEEEe--cCCCCCCcCHHHHHHhcCC-CCeEEEEeC-C
Confidence 789999 9999999999977666433 3345566565555 4434678999999999987 888887531 2
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCC--CCCCCC-CceEEEEe-cchhhh
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH--KSLRGP-RGAMIFFR-KGVKEI 277 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~--K~l~gp-~gG~l~~~-~~~~~~ 277 (286)
+|...++++|.++|+++|+++|+|++|+.|....+. ... ...|++++|+| |+|+++ ++|+++++ +++.+.
T Consensus 161 tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~ 234 (399)
T 2oga_A 161 YGHPADMDALRELADRHGLHIVEDAAQAHGARYRGR-RIG-AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAER 234 (399)
T ss_dssp GGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTE-ETT-CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHH
T ss_pred cCCccCHHHHHHHHHHcCCEEEEECcccccCccCCe-ecc-cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHH
Confidence 788889999999999999999999999877543211 111 12699999995 999764 67888886 455443
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=161.00 Aligned_cols=195 Identities=18% Similarity=0.192 Sum_probs=138.6
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQV 128 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~ 128 (286)
+++..+.+.+++++++++.+.+.+.+ |.......+++ +.+++++|.+. .|++++|+.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~a~~~a 65 (390)
T 3b8x_A 4 INYPLASSTWDDLEYKAIQSVLDSKM---------FTMGEYVKQYE----TQFAKTFGSKY-----AVMVSSGSTANLLM 65 (390)
T ss_dssp -CBCSCCCCCCHHHHHHHHHHHHHTC---------CSSCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHHHHHHcCC---------CCCChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHH
Confidence 55555777789999999988886521 12234455555 67777778762 47777777788778
Q ss_pred HHHh-------cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 129 YTAL-------LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 129 l~a~-------~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
+.++ +++||+|+++.+.|.++..+ +...|.+++.++ ++++++.+|++++++++++ +|++|++
T Consensus 66 l~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~--------~~~~g~~~~~~~--~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 66 IAALFFTKKPRLKKGDEIIVPAVSWSTTYYP--------LQQYGLRVKFVD--IDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp HHHTTSSSSCSCCTTCEEEEESSSCHHHHHH--------HHHTTCEEEEEC--BCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred HHHHHhhhhcCCCCcCEEEECCCCcHHHHHH--------HHHcCCEEEEEe--cCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 8888 88999999999877776542 334565555554 5544589999999999987 8999988
Q ss_pred cCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeC--CCCCCCCCCceEEEEec-chh
Q 023191 202 GASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTT--THKSLRGPRGAMIFFRK-GVK 275 (286)
Q Consensus 202 ~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s--~~K~l~gp~gG~l~~~~-~~~ 275 (286)
+. .+|...++++|.++|++||+++|+|++|+.|... +....+. ..|+.++| .+|.++++.||++++++ ++.
T Consensus 135 ~~-~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~g~-~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~ 208 (390)
T 3b8x_A 135 VN-LLGNPNNFDEINKIIGGRDIILLEDNCESMGATF-NNKCAGT-FGLMGTFSSFYSNHIATMEGGCIVTDDEEIY 208 (390)
T ss_dssp EC-GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-TTEETTS-SSSEEEEECCTTSSSCSSSCEEEEESCHHHH
T ss_pred EC-CccChhhHHHHHHHHHHcCCEEEEECcCcccCEE-CCccccc-ccceEEEEccCCCCCccCCceEEEeCCHHHH
Confidence 52 2456689999999999999999999999988765 2222221 13554433 24447677789999987 443
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-20 Score=166.59 Aligned_cols=230 Identities=16% Similarity=0.057 Sum_probs=156.4
Q ss_pred ccccccChHHHHHHHHHHHHHHcCceecCCCCC-----CCHHHHHHhc--cccccCCCCCCCCCccc-CCcchHHHHHHH
Q 023191 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENF-----TSVSVMQAVG--SVMTNKYSEGYPGARYY-GGNEYIDMAESL 96 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~-----~~~~v~~a~~--~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~ 96 (286)
..+..+.++.++.+.+.. .....++|..+.+. +++.+++++. +.+.+.. ....| +...+..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~-----~~~~Yp~~~~g~~~lr-- 76 (423)
T 3ez1_A 5 EASRPALDLARQAYEAFK-ARGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGL-----DLRNYPGGVAGLPSAR-- 76 (423)
T ss_dssp -CCHHHHHHHHHHHHHHH-HHTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTE-----ETTSSCSCTTCCHHHH--
T ss_pred HHHHHHHHHHHHHHHHhh-cCCceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcch-----hhhCCCCCCCChHHHH--
Confidence 355667788888887753 44578999988775 4567888875 5544210 01123 4445556666
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHH--HHHHHhcC--C---------CCeEEeccCCCCcccCccccccccccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNF--QVYTALLK--P---------HDRIMALDLPHGGHLSHGYQTDTKKIS 162 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~--~~l~a~~~--~---------Gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (286)
+.++++++++++ +|++|+|++ ++. +++.++++ | ||+|+++++.|.++ ...+.
T Consensus 77 --~~ia~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~--------~~~~~ 142 (423)
T 3ez1_A 77 --ALFAGYLDVKAE----NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRH--------FLLLQ 142 (423)
T ss_dssp --HHHHHHTTSCGG----GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHH--------HHHHH
T ss_pred --HHHHHHhCCChh----hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHH--------HHHHH
Confidence 667777788775 599999999 775 68888888 8 59999999555443 33455
Q ss_pred cceeeeEEEecccCCCCCCCCHHHHHHHhh-hcCCcEEEEc--CCC-CCCccCHH---HHHHHH-HhcCCEEEEeccccc
Q 023191 163 AVSIFFETMPYRLNESTGYIDYDQLEKSAT-LFRPKLIVAG--ASA-YARLYDYE---RIRKVC-NKQKAIMLADMAHIS 234 (286)
Q Consensus 163 ~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~-~~~tk~v~i~--~~n-~g~~~~l~---~I~~ia-~~~~~~vivD~a~~~ 234 (286)
..|.+++.+++ + ++ .+|+++|+++++ ..++++|++. ++| +|...+.+ +|+++| ++||+++|+|++|..
T Consensus 143 ~~g~~~~~v~~--~-~~-g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~ 218 (423)
T 3ez1_A 143 TLGFELLTVDM--Q-SD-GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV 218 (423)
T ss_dssp HHTCEEEEEEE--E-TT-EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSS
T ss_pred HcCCEEEeccC--C-CC-CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcch
Confidence 67766666654 4 22 499999999995 2378998764 466 67777765 888888 899999999999874
Q ss_pred ccccc-CCCCC----------CCCcceEEEeCCCCC-CCCCCceEEEEecchhhhhcc
Q 023191 235 GLVAA-GVIPS----------PFEYADVVTTTTHKS-LRGPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 235 g~~~~-~~~~~----------~~~~~D~v~~s~~K~-l~gp~gG~l~~~~~~~~~~~~ 280 (286)
..+.. +.... ...+.++++.|++|+ ++|.+.|+++.++++.+..++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~ 276 (423)
T 3ez1_A 219 HHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSK 276 (423)
T ss_dssp CBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHH
T ss_pred hhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHH
Confidence 33322 11110 011366889999995 455566999999887766553
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=165.77 Aligned_cols=230 Identities=11% Similarity=0.049 Sum_probs=149.0
Q ss_pred ccccccccCh-HHHHHHHHHHHHH------HcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHH
Q 023191 23 LNAPLEVVDP-EIADIIEHEKARQ------WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 93 (286)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~~~~~------~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 93 (286)
+++.+..+++ +.+..+.+..... .+.|+|..+++ ++++.+++++.+.+..... + .+...|+...+..++
T Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-~-~~~~~y~~~~g~~~l 103 (432)
T 3ei9_A 26 RNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELST-I-EGYSGYGAEQGAKPL 103 (432)
T ss_dssp CCHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTS-T-TTCCCCCCTTCCHHH
T ss_pred cChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccc-c-CCccCCCCCCCCHHH
Confidence 3444555555 3555443322211 15689988877 4689999999888764211 0 111234545667889
Q ss_pred HHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce-------
Q 023191 94 ESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS------- 165 (286)
Q Consensus 94 ~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g------- 165 (286)
++++.+++.+.++++++ +|++|+|++ ++. ++.++++|||.|+++++.|.++.... ...|
T Consensus 104 ~~~ia~~~~~~~~~~~~----~i~~t~G~~~al~-~l~~l~~~gd~Vl~~~p~y~~~~~~~--------~~~g~~~~~~~ 170 (432)
T 3ei9_A 104 RAAIAKTFYGGLGIGDD----DVFVSDGAKCDIS-RLQVMFGSNVTIAVQDPSYPAYVDSS--------VIMGQTGQFNT 170 (432)
T ss_dssp HHHHHHHHHTTTTCCGG----GEEEESCHHHHHH-HHHHHHCTTCCEEEEESCCTHHHHHH--------HHHTCSCCEET
T ss_pred HHHHHHHHHccCCCCcc----eEEECCChHHHHH-HHHHHcCCCCEEEEeCCCCHHHHHHH--------HHcCCcccccc
Confidence 98888888766666654 599999999 555 56888999999999997777664322 2222
Q ss_pred -----eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccc
Q 023191 166 -----IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISG 235 (286)
Q Consensus 166 -----~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g 235 (286)
..++.++++.+ .++..|+++ .+ ++++|+++ |+| +|...+ +++|+++|++||+++|+|++|+..
T Consensus 171 ~~~~~~~~~~~~~~~~-~~~~~~l~~-----~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~ 243 (432)
T 3ei9_A 171 DVQKYGNIEYMRCTPE-NGFFPDLST-----VG-RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMY 243 (432)
T ss_dssp TTTEETTCEEEECCGG-GTTSCCGGG-----CC-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred cccccCceEEeccCcc-cCCcCChhh-----CC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhh
Confidence 12444543321 234566443 23 78999997 766 666554 677788899999999999998754
Q ss_pred ccccCCCC-CCC---CcceEEEeCCCCCC--CCCCceEEEEecch
Q 023191 236 LVAAGVIP-SPF---EYADVVTTTTHKSL--RGPRGAMIFFRKGV 274 (286)
Q Consensus 236 ~~~~~~~~-~~~---~~~D~v~~s~~K~l--~gp~gG~l~~~~~~ 274 (286)
........ ..+ ...++++.|++|+| .|.+.|++++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~ 288 (432)
T 3ei9_A 244 MSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKL 288 (432)
T ss_dssp CCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTC
T ss_pred ccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHH
Confidence 33211110 001 13568999999987 34455999998877
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=165.36 Aligned_cols=220 Identities=12% Similarity=0.009 Sum_probs=147.0
Q ss_pred cCceecCCCCCC-CHHHHHHhccccccCCC--CCCCC---CcccCCcchHHHHHHHHHHHHHHHCC----CCCCCcceeE
Q 023191 47 KGLELIPSENFT-SVSVMQAVGSVMTNKYS--EGYPG---ARYYGGNEYIDMAESLCQKRALEAFR----LDPEKWGVNV 116 (286)
Q Consensus 47 ~~i~L~~~e~~~-~~~v~~a~~~~l~~~~~--~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~~~~~v 116 (286)
..|+|...+++. .+.+.+++.+....... +|... ...|+...+..++++++.+++.+.++ ++++ +|
T Consensus 39 ~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~----~v 114 (435)
T 3piu_A 39 GIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN----HL 114 (435)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG----GE
T ss_pred CeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH----HE
Confidence 357888888865 55666666554321110 01000 02345556678899888888887665 4443 59
Q ss_pred EeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccc-cceeeeEEEecccCCCCCCCCHHHHHHHhhhc
Q 023191 117 QSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS-AVSIFFETMPYRLNESTGYIDYDQLEKSATLF 194 (286)
Q Consensus 117 ~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~ 194 (286)
++++|++ ++.+++.+++++||.|+++.+.|.++.. .+. ..|.+++.++++.+ .++.+|+++|++++++.
T Consensus 115 ~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~--------~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l~~~ 185 (435)
T 3piu_A 115 VLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTGVEIVPIHCTSS-NGFQITETALEEAYQEA 185 (435)
T ss_dssp EEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTCCEEEEEECCGG-GTSCCCHHHHHHHHHHH
T ss_pred EEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHH--------HHHHhcCCEEEEeeCCCc-cCCcCCHHHHHHHHHHH
Confidence 9999999 8888999999999999999977766542 223 45666655654322 34679999999998752
Q ss_pred -----CCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC--------------Ccce
Q 023191 195 -----RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF--------------EYAD 250 (286)
Q Consensus 195 -----~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~--------------~~~D 250 (286)
++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+.+........... ....
T Consensus 186 ~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 265 (435)
T 3piu_A 186 EKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRV 265 (435)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGE
T ss_pred HhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCE
Confidence 78888887 666 676554 57888999999999999999876443322111100 0123
Q ss_pred EEEeCCCCCCC--CCCceEEEEec-chhhhhc
Q 023191 251 VVTTTTHKSLR--GPRGAMIFFRK-GVKEINK 279 (286)
Q Consensus 251 ~v~~s~~K~l~--gp~gG~l~~~~-~~~~~~~ 279 (286)
+++.|+||+|+ |.+.|++++++ .+.+..+
T Consensus 266 i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~ 297 (435)
T 3piu_A 266 HVVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT 297 (435)
T ss_dssp EEEEESSSSSCCGGGCEEEEEESCHHHHHHHH
T ss_pred EEEEeeecccCCCceeEEEEEeCCHHHHHHHH
Confidence 88999999984 34459999954 4555444
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=163.30 Aligned_cols=161 Identities=16% Similarity=0.113 Sum_probs=123.9
Q ss_pred HHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 95 SLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 95 ~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
+.+++++++++|.+. .|++++|+.++.+++.+++++||+|+++++.|+++..... ..+...|.+++.++
T Consensus 117 ~~l~~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G~~v~~v~-- 185 (445)
T 1qgn_A 117 VVLEEKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIE----TILPKMGITATVID-- 185 (445)
T ss_dssp HHHHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHH----HTGGGGTCEEEEEC--
T ss_pred HHHHHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH----HHHHHcCCEEEEeC--
Confidence 345578888888752 5999999887777889999999999999987776543111 01234465554443
Q ss_pred cCCCCCCCCHHHHHHHhhhcCC-cEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cce
Q 023191 175 LNESTGYIDYDQLEKSATLFRP-KLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YAD 250 (286)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~~t-k~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D 250 (286)
.+ |++++++++++ +| ++|+++ ++| +|.+.|+++|+++|++||+++|+|++|+.+... .++. ++|
T Consensus 186 ~~------d~~~l~~ai~~-~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-----~~~~~g~D 253 (445)
T 1qgn_A 186 PA------DVGALELALNQ-KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-----KALALGAD 253 (445)
T ss_dssp SS------CHHHHHHHHHH-SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----CTTTTTCS
T ss_pred CC------CHHHHHHHhcc-CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----CccccCCE
Confidence 22 89999999988 89 999997 666 678899999999999999999999999866432 1222 599
Q ss_pred EEEeCCCCCCCCCC---ceEEEEecchhhhh
Q 023191 251 VVTTTTHKSLRGPR---GAMIFFRKGVKEIN 278 (286)
Q Consensus 251 ~v~~s~~K~l~gp~---gG~l~~~~~~~~~~ 278 (286)
+++.|+||+++|+. +|++++++++.+.+
T Consensus 254 iv~~S~sK~~gg~gd~~~G~l~~~~~l~~~l 284 (445)
T 1qgn_A 254 LVLHSATKFLGGHNDVLAGCISGPLKLVSEI 284 (445)
T ss_dssp EEEECTTTTTTCSSSCCCEEEEECHHHHHHH
T ss_pred EEEECCcccccccccceEEEEEECHHHHHHH
Confidence 99999999998875 79999998766544
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-20 Score=173.33 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH--HHHHHHHHhcC--CCCeEEeccCCCCcccCccccccccccccce
Q 023191 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP--SNFQVYTALLK--PHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 90 ~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~--a~~~~l~a~~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
..++++++++++++++|++. . +++|+|++ ++++++.++.. +|+.|++++++|.++.. .+...|
T Consensus 131 ~~~~~~~~~~~la~~~g~~~----~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~--------~~~~~G 197 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNV----H-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK--------AVSFVG 197 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCC----E-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH--------HHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCC----C-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH--------HHHHcC
Confidence 66788899999999999976 3 78888877 44445555433 77889999977776432 344567
Q ss_pred eeeEEEeccc-CCCCCCCCHHHHHHHh-hh---cCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccc---c
Q 023191 166 IFFETMPYRL-NESTGYIDYDQLEKSA-TL---FRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHIS---G 235 (286)
Q Consensus 166 ~~~~~v~~~~-~~~~~~~d~e~l~~~i-~~---~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~---g 235 (286)
.+++.+++.. + +++.+|+++|++++ ++ .++++|+++ ++| +|.+.|+++|+++|+++|+++++|+||+. |
T Consensus 198 ~~~~~v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g 276 (456)
T 2z67_A 198 MNMRLVETVLDG-DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNY 276 (456)
T ss_dssp CEEEEECCEEET-TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred CCceEEEEeccC-CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHH
Confidence 6666665321 3 56789999999999 42 367777666 545 78999999999999999999999988653 3
Q ss_pred ccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEec-chhh
Q 023191 236 LVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRK-GVKE 276 (286)
Q Consensus 236 ~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~-~~~~ 276 (286)
..+.+...... ++|++++|+|||+++|.| |++++++ ++.+
T Consensus 277 ~~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~ 318 (456)
T 2z67_A 277 YLEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIK 318 (456)
T ss_dssp HHHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHHHH
T ss_pred hhHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHHHh
Confidence 32222111111 499999999999888887 9999964 4544
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-19 Score=158.94 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=137.9
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.++|..++++ +++.+++++.+.+... .+|+. .+..+++ +.+++++|++++ +|++|+|++
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~l~----~~la~~~~~~~~----~v~~~~g~~~ 87 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDCI--ERYPD-------ADYFHLH----QALARHHQVPAS----WILAGNGETE 87 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGG--GSCCC-------TTCHHHH----HHHHHHHTSCGG----GEEEESSHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHHh--hcCCC-------CCHHHHH----HHHHHHHCcCHH----HEEECCCHHH
Confidence 57899888774 6899999998877531 12321 2334555 666667788764 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.+++.++ +||+|+++.+.|.++. ..+...|.+++.++++.+ +++.+ ++++.+.+.+ ++++|+++
T Consensus 88 al~~~~~~~--~gd~vl~~~p~y~~~~--------~~~~~~g~~~~~v~~~~~-~~~~~-l~~~~~~~~~-~~~~v~i~~ 154 (364)
T 1lc5_A 88 SIFTVASGL--KPRRAMIVTPGFAEYG--------RALAQSGCEIRRWSLREA-DGWQL-TDAILEALTP-DLDCLFLCT 154 (364)
T ss_dssp HHHHHHHHH--CCSEEEEEESCCTHHH--------HHHHHTTCEEEEEECCGG-GTTCC-CTTHHHHCCT-TCCEEEEES
T ss_pred HHHHHHHHc--CCCeEEEeCCCcHHHH--------HHHHHcCCeEEEEeCCcc-cccch-hHHHHHhccC-CCCEEEEeC
Confidence 777677777 7899999996665543 234456666655654321 23333 4656666655 78988886
Q ss_pred CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccccccc-CCCCC-CCCcceEEEeCCCCCCC--CCCceEEE-Eecc
Q 023191 203 ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA-GVIPS-PFEYADVVTTTTHKSLR--GPRGAMIF-FRKG 273 (286)
Q Consensus 203 ~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~-~~~~~-~~~~~D~v~~s~~K~l~--gp~gG~l~-~~~~ 273 (286)
++| +|...+ +++|+++|++||+++|+|++|+.+.... ..... ...+.|+++.|+||+|+ |.+.|+++ .+++
T Consensus 155 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~ 234 (364)
T 1lc5_A 155 PNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDA 234 (364)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHH
Confidence 766 777777 8999999999999999999987543310 11100 11137899999999985 33459999 8887
Q ss_pred hhhhhc
Q 023191 274 VKEINK 279 (286)
Q Consensus 274 ~~~~~~ 279 (286)
+.+..+
T Consensus 235 ~~~~l~ 240 (364)
T 1lc5_A 235 AMARMR 240 (364)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765554
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.3e-19 Score=160.73 Aligned_cols=226 Identities=14% Similarity=0.117 Sum_probs=152.1
Q ss_pred ccccccChH-HHHHHHHHHHH-HHcCceecCCCC-------CCCHHHHHHhcccc-ccCCCCCCCCCcccCCcchHHHHH
Q 023191 25 APLEVVDPE-IADIIEHEKAR-QWKGLELIPSEN-------FTSVSVMQAVGSVM-TNKYSEGYPGARYYGGNEYIDMAE 94 (286)
Q Consensus 25 ~~~~~~~~~-~~~~~~~~~~~-~~~~i~L~~~e~-------~~~~~v~~a~~~~l-~~~~~~~~~~~~~~~~~~~~~~l~ 94 (286)
..+...+++ ++.......+. ..+.|+|..|+. ++++.+++++. .+ .... ...|+...+..+|+
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~------~~~Y~~~~G~~~lr 78 (405)
T 3k7y_A 6 SSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYK------EKPYLLGNGTEDFS 78 (405)
T ss_dssp GGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCC------CCCCCTTSSCHHHH
T ss_pred hcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCC------CCCCCCCCCcHHHH
Confidence 345556665 44444432221 136799998851 35788888876 33 2211 12245667889999
Q ss_pred HHHHHHHHHHCCCC--CCCcceeEEeCCChH-HHHHHHHHhcC--CCCeEEeccCCCCcccCccccccccccccceeeeE
Q 023191 95 SLCQKRALEAFRLD--PEKWGVNVQSLSGSP-SNFQVYTALLK--PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFE 169 (286)
Q Consensus 95 ~~~~~~~~~~~g~~--~~~~~~~v~~~sG~~-a~~~~l~a~~~--~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 169 (286)
+++.+++.+..+.. ++. .+|++|+|++ ++.+++.++++ | |+|++++ |.|+.|...+...|.+++
T Consensus 79 ~aia~~~~~~~~~~~~~~~--i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~--------P~y~~~~~~~~~~g~~~~ 147 (405)
T 3k7y_A 79 TLTQNLIFGNNSKYIEDKK--ICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTN--------PPYINHVNMIESRGFNLK 147 (405)
T ss_dssp HHHHHHHHCSSCTTTTTTC--EEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEES--------SCCHHHHHHHHTTTCEEE
T ss_pred HHHHHHHcCCCCccccccc--eEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeC--------CCCHhHHHHHHHcCCeEE
Confidence 99999987665543 222 2468899999 88778888877 9 9999999 666666656778887776
Q ss_pred EEecccCCCCCCCCHHHHHHHhhhc-CCcEEEEc-C-CC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCC
Q 023191 170 TMPYRLNESTGYIDYDQLEKSATLF-RPKLIVAG-A-SA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVI 242 (286)
Q Consensus 170 ~v~~~~~~~~~~~d~e~l~~~i~~~-~tk~v~i~-~-~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~ 242 (286)
.+|+. +.+++.+|++++++.+.+. ++++++++ + +| +|...+ +++|+++|++|+++||+|+++. +....+..
T Consensus 148 ~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~-~l~~~~~~ 225 (405)
T 3k7y_A 148 YINFF-DYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ-GFGHTNLE 225 (405)
T ss_dssp EECCE-ETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCT-TTSSSSTT
T ss_pred EEecc-ccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcc-cccCCCcc
Confidence 67642 3346899999999999752 46788886 4 45 665544 7788999999999999999964 33221110
Q ss_pred C--C------CCCcceEEEeCCCCCCC--CCCceEEEE
Q 023191 243 P--S------PFEYADVVTTTTHKSLR--GPRGAMIFF 270 (286)
Q Consensus 243 ~--~------~~~~~D~v~~s~~K~l~--gp~gG~l~~ 270 (286)
. . .....-+++.|++|+|+ |.|-|++++
T Consensus 226 ~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~ 263 (405)
T 3k7y_A 226 EDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHI 263 (405)
T ss_dssp GGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEE
T ss_pred cchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEE
Confidence 0 0 00013377999999874 778899864
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=162.42 Aligned_cols=200 Identities=17% Similarity=0.101 Sum_probs=139.6
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCC--CCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKY--SEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
+.|+|..++++ +++.+++++.+.+.+.. ..+|+. ....+++ +.+++++|++++ +|++|+|+
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~-------~~~~~lr----~~la~~~g~~~~----~i~~t~g~ 91 (360)
T 3hdo_A 27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPS-------ASSQKLR----EVAGELYGFDPS----WIIMANGS 91 (360)
T ss_dssp TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCC-------SSCHHHH----HHHHHHHTCCGG----GEEEESSH
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCC-------CchHHHH----HHHHHHhCcCcc----eEEEcCCH
Confidence 57899988884 58999999988876520 112322 1224444 677777788764 49999999
Q ss_pred H-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 123 ~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
+ ++.+++.+++++||+|+++++.|.++. ..+...|.+++.++ .+ +++.+ +++++. .+++++++
T Consensus 92 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~--------~~~~~~g~~~~~v~--~~-~~~~~--~~l~~~---~~~~~v~i 155 (360)
T 3hdo_A 92 DEVLNNLIRAFAAEGEEIGYVHPSYSYYG--------TLAEVQGARVRTFG--LT-GDFRI--AGFPER---YEGKVFFL 155 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSSCTHHH--------HHHHHHTCEEEEEC--BC-TTSSB--TTCCSS---BCSSEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCChHHHH--------HHHHHCCCEEEEee--CC-CCCCH--HHHHhh---cCCCEEEE
Confidence 9 888899999999999999996665543 24456676665555 44 34444 444332 35788888
Q ss_pred c-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC---CcceEEEeCCCCCCC--CCCceEEEEecch
Q 023191 202 G-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF---EYADVVTTTTHKSLR--GPRGAMIFFRKGV 274 (286)
Q Consensus 202 ~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~---~~~D~v~~s~~K~l~--gp~gG~l~~~~~~ 274 (286)
+ ++| +|...|+++|.++|+++|+++|+|++|+.. .. . ....+ .+.++++.|++|+++ |.+.|++++++++
T Consensus 156 ~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~-~~-~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 232 (360)
T 3hdo_A 156 TTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEF-AE-S-NALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEV 232 (360)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGG-SS-C-CCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHH
T ss_pred eCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhh-CC-c-chhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHH
Confidence 7 666 789999999999999999999999998742 11 1 11010 125588999999974 4455999998887
Q ss_pred hhhhcc
Q 023191 275 KEINKQ 280 (286)
Q Consensus 275 ~~~~~~ 280 (286)
.+..++
T Consensus 233 ~~~~~~ 238 (360)
T 3hdo_A 233 IAALDK 238 (360)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766553
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-20 Score=167.75 Aligned_cols=223 Identities=12% Similarity=0.060 Sum_probs=141.8
Q ss_pred HcCceecCCCCCCCH----HHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 46 WKGLELIPSENFTSV----SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 46 ~~~i~L~~~e~~~~~----~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
.+.++|..+.+.+.+ .+.+++.+.+.+... ......|+...+..++++++.+++.+.+|+..+. .+|++|+|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G 106 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKA--ADALCNYDGPQGKTALLNALAVLLRETLGWDIEP--QNIALTNG 106 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHH--HHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCG--GGEEEESC
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcc--cceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCc--ccEEEeCC
Confidence 477999998886644 444555544432100 0000124555778899999999998887764332 36999999
Q ss_pred hH-HHHHHHHHhcCCCC-----eEEec-cCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc
Q 023191 122 SP-SNFQVYTALLKPHD-----RIMAL-DLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF 194 (286)
Q Consensus 122 ~~-a~~~~l~a~~~~Gd-----~Vl~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~ 194 (286)
++ ++.+++.+++++|| +|+++ ++.|.++........ .+.+......+++.+..++.+|+++++ +.+
T Consensus 107 ~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~- 179 (417)
T 3g7q_A 107 SQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDD----LFVSARPNIELLPEGQFKYHVDFEHLH--IGE- 179 (417)
T ss_dssp HHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----C----CEEECCCEEEEEGGGEEEEECCGGGCC--CCT-
T ss_pred cHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchh----hhccccCcccccCCcccccccCHHHhc--ccc-
Confidence 99 88889999999988 89997 866655533211000 112222333443322124578998887 555
Q ss_pred CCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccccccc---CCCCCCCCcceEEEeCCCCCC-CCCCc
Q 023191 195 RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA---GVIPSPFEYADVVTTTTHKSL-RGPRG 265 (286)
Q Consensus 195 ~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~---~~~~~~~~~~D~v~~s~~K~l-~gp~g 265 (286)
++++|+++ ++| +|...+ +++|+++|++||+++|+|++|+...... +..+ ...+.++++.|++|+. .|.+.
T Consensus 180 ~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~G~r~ 258 (417)
T 3g7q_A 180 ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARP-LWNPNIILCMSLSKLGLPGSRC 258 (417)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCC-CCCTTEEEEEESGGGTCTTSCC
T ss_pred CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccccccc-CCCCCEEEEEechhccCCCcce
Confidence 88999887 777 777777 8899999999999999999986422111 1111 1124778999999943 22234
Q ss_pred eEEEEecchhhhhcc
Q 023191 266 AMIFFRKGVKEINKQ 280 (286)
Q Consensus 266 G~l~~~~~~~~~~~~ 280 (286)
|+++.++++.+..++
T Consensus 259 G~~~~~~~~~~~~~~ 273 (417)
T 3g7q_A 259 GIIIANDKTITAIAN 273 (417)
T ss_dssp EEEECCHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHH
Confidence 999998887766543
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=165.78 Aligned_cols=205 Identities=16% Similarity=0.115 Sum_probs=137.4
Q ss_pred cCceecCC-CC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 47 KGLELIPS-EN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~-e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
+.++|..+ ++ ++++.+.++....... ..+ .+...|+. .+. ..++++++++++++|.+. .+++++|+.
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~-~~~--~~~~~Y~~-~g~-~~~~~l~~~la~~~g~~~-----~i~~~sGt~ 159 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPS-AIE--NGPYDYTR-SGN-PTRDALESLLAKLDKADR-----AFCFTSGMA 159 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSS-SSC--CCSCSBTT-TCC-HHHHHHHHHHHHHHTCSE-----EEEESSHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhc-ccc--cCCccccC-CCC-HHHHHHHHHHHHHhCCCe-----EEEECCHHH
Confidence 45777665 33 4566776666543111 000 01111221 122 256667799999998752 366666665
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.+++ .++++||+|+++++.|+++..... ..+...|.+++.++ .+ |++++++++++ +|++|+++
T Consensus 160 al~~~l-~~~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G~~v~~v~--~~------d~~~l~~~i~~-~tk~v~l~~ 225 (464)
T 1ibj_A 160 ALSAVT-HLIKNGEEIVAGDDVYGGSDRLLS----QVVPRSGVVVKRVN--TT------KLDEVAAAIGP-QTKLVWLES 225 (464)
T ss_dssp HHHHHH-TTSCTTCEEEEESSCCHHHHHHHH----HTSGGGTCEEEEEC--TT------SHHHHHHHCCS-SEEEEEECS
T ss_pred HHHHHH-HHhCCCCEEEEECCCchhHHHHHH----HHHHHcCCEEEEeC--CC------CHHHHHHHhcc-CceEEEEeC
Confidence 776555 488999999999987776542210 11234565555443 22 89999999987 89999998
Q ss_pred CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCC---ceEEEEec-chhhh
Q 023191 203 ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPR---GAMIFFRK-GVKEI 277 (286)
Q Consensus 203 ~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~---gG~l~~~~-~~~~~ 277 (286)
++| +|.+.++++|+++|++||+++|+|++|+.|....... . ++|+++.|+||+|+||. +|++++++ ++.+.
T Consensus 226 p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~-~---~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~ 301 (464)
T 1ibj_A 226 PTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE-L---GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKE 301 (464)
T ss_dssp SCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG-T---TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHH
T ss_pred CCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhh-c---CCEEEEECCcccccCCCCCcEEEEEEChHHHHHH
Confidence 666 7788899999999999999999999998764321111 1 48999999999998774 49999986 56544
Q ss_pred hc
Q 023191 278 NK 279 (286)
Q Consensus 278 ~~ 279 (286)
.+
T Consensus 302 l~ 303 (464)
T 1ibj_A 302 VY 303 (464)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=165.87 Aligned_cols=161 Identities=13% Similarity=0.052 Sum_probs=120.6
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
.+++.+++++|.+. .+++++|+.++.+++.+++++||+|+++++.|.+...+... .....|.++..++ .
T Consensus 86 ~le~~lA~l~g~~~-----~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~----~l~~~G~~v~~v~--~ 154 (415)
T 2fq6_A 86 SLQQAMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSK----ILSKLGVTTSWFD--P 154 (415)
T ss_dssp HHHHHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHH----TGGGGTCEEEEEC--T
T ss_pred HHHHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHH----HHHHcCcEEEEEC--C
Confidence 34477888888753 47776665588778999999999999999888776543211 1123454444442 2
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHh--cCCEEEEeccccccccccCCCCCCCC-cce
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNK--QKAIMLADMAHISGLVAAGVIPSPFE-YAD 250 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~--~~~~vivD~a~~~g~~~~~~~~~~~~-~~D 250 (286)
+ |++++++++++ +||+|+++ ++| +|.+.|+++|+++|++ +|+++|+|++|+.+... .++. ++|
T Consensus 155 ~------d~~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~-----~p~~~g~D 222 (415)
T 2fq6_A 155 L------IGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLF-----KALDFGID 222 (415)
T ss_dssp T------CGGGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSS-----CGGGGTCS
T ss_pred C------CHHHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccC-----CccccCCe
Confidence 2 78999999987 89999997 666 7789999999999999 99999999998865321 1222 599
Q ss_pred EEEeCCCCCCCCCC---ceEEEEecchhhhhc
Q 023191 251 VVTTTTHKSLRGPR---GAMIFFRKGVKEINK 279 (286)
Q Consensus 251 ~v~~s~~K~l~gp~---gG~l~~~~~~~~~~~ 279 (286)
++++|+||+++++. +|++++++++.+.++
T Consensus 223 iv~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~ 254 (415)
T 2fq6_A 223 VSIQAATKYLVGHSDAMIGTAVCNARCWEQLR 254 (415)
T ss_dssp EEEEETTTTTTCSSSCCCEEEEECTTTHHHHH
T ss_pred EEEEeCccccCCCCCceEEEEEeCHHHHHHHH
Confidence 99999999998875 699999887655443
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-20 Score=164.26 Aligned_cols=176 Identities=7% Similarity=0.006 Sum_probs=125.7
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
....++.+++++.+++++|.+. .|++++|++ ++.+++ ..+.+||+|+++++.|.+.. ... .+...|.
T Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~-----~v~~~~sgt~a~~~~~-~~~~~gd~vi~~~~~~~~~~--~~~----~~~~~g~ 98 (379)
T 3ke3_A 31 KAFQEVMNDLLSNLKTVYNAEA-----AVIIPGSGTYGMEAVA-RQLTIDEDCLIIRNGWFSYR--WTQ----ILEKGKF 98 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSE-----EEEEESCHHHHHHHHH-HHHCTTCEEEEEECSHHHHH--HHH----HHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCC-----EEEEcCChhHHHHHHH-HhCCCCCeEEEEeCCchhHH--HHH----HHHHhCC
Confidence 3455777888999999999872 488877777 777555 45689999999986665431 110 1112232
Q ss_pred --eeEEEecccCC-----CC-CCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccc
Q 023191 167 --FFETMPYRLNE-----ST-GYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 233 (286)
Q Consensus 167 --~~~~v~~~~~~-----~~-~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~ 233 (286)
+++.++.+... .. ..+|++++++++++.+|++|++. ..| +|...| +++|.++|++||+++|+|++|+
T Consensus 99 ~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~ 178 (379)
T 3ke3_A 99 AKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS 178 (379)
T ss_dssp SSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 34444432210 01 25899999999965489998886 344 677888 9999999999999999999987
Q ss_pred ccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 234 SGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 234 ~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
|....+.... ++|++++|+||+|+||.| |++++++++.+..+
T Consensus 179 -g~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~ 221 (379)
T 3ke3_A 179 -GCVWLDMKEL---GIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVE 221 (379)
T ss_dssp -TTCCCCHHHH---TCSEEEECTTTTTCSCCCEEEEEECHHHHHHHH
T ss_pred -CCcccccccc---CCCEEEecchhhcCCCCceEEEEECHHHHHhhh
Confidence 6443332222 489999999999999988 99999988766554
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=161.75 Aligned_cols=227 Identities=10% Similarity=0.025 Sum_probs=147.4
Q ss_pred ccccChHHHHHHHHHHHHH--HcCceecCCC---C--CC--CHHHHHHhcc-ccccCCCCCCCCCcccCCcchHHHHHHH
Q 023191 27 LEVVDPEIADIIEHEKARQ--WKGLELIPSE---N--FT--SVSVMQAVGS-VMTNKYSEGYPGARYYGGNEYIDMAESL 96 (286)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~--~~~i~L~~~e---~--~~--~~~v~~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (286)
+...+++....+....... .+.++|..|. + .+ ++.+++++.+ .+.+....+ |+...+..+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~------y~~~~g~~~lr~~ 78 (397)
T 3fsl_A 5 VDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASL------YLPMEGLNCYRHA 78 (397)
T ss_dssp CCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCC------CCCTTCCHHHHHH
T ss_pred CCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCcccccc------CCCCCchHHHHHH
Confidence 3444554444444433322 3568998883 2 23 4899999988 776422112 3344566788888
Q ss_pred HHHHHHHHCCC--CCCCcceeEEeCCChH-HHHHH--HHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEE
Q 023191 97 CQKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQV--YTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM 171 (286)
Q Consensus 97 ~~~~~~~~~g~--~~~~~~~~v~~~sG~~-a~~~~--l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v 171 (286)
+.+++....+. +++. .+|++|+|++ ++.++ +.+++++||+|+++.+.|.++ ...+...|.+++.+
T Consensus 79 la~~~~~~~~~~~~~~~--~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~--------~~~~~~~g~~~~~~ 148 (397)
T 3fsl_A 79 IAPLLFGADHPVLKQQR--VATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENH--------VAIFAGAGFEVSTY 148 (397)
T ss_dssp HHHHHHCTTCHHHHTTC--EEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHH--------HHHHHHTTCCEEEE
T ss_pred HHHHHhcCCcccccccc--eEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhH--------HHHHHHcCCceEEE
Confidence 87877655442 3431 1599999999 77766 356689999999999555444 33455667667666
Q ss_pred ecccCCCCCCCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 172 PYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 172 ~~~~~~~~~~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
++..+ +++.+|++++++.+++ .++++++++ ++| +|... ++++|+++|++||+++|+|++|.......+....
T Consensus 149 ~~~~~-~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 227 (397)
T 3fsl_A 149 PWYDE-ATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAY 227 (397)
T ss_dssp CCEET-TTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGH
T ss_pred eeeec-cCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccH
Confidence 64212 4688999999999983 267788877 666 66654 4669999999999999999997643322100000
Q ss_pred ------CCCcceEEEeCCCCCCC--CCCceEEEE
Q 023191 245 ------PFEYADVVTTTTHKSLR--GPRGAMIFF 270 (286)
Q Consensus 245 ------~~~~~D~v~~s~~K~l~--gp~gG~l~~ 270 (286)
......+++.|++|+++ |.+.|++++
T Consensus 228 ~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~ 261 (397)
T 3fsl_A 228 AIRAIASAGLPALVSNSFSKIFSLYGERVGGLSV 261 (397)
T ss_dssp HHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEE
T ss_pred HHHHHHhcCCCEEEEecccccccCcCCCeeEEEE
Confidence 00124588999999885 444599876
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=160.36 Aligned_cols=162 Identities=13% Similarity=0.150 Sum_probs=123.2
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+++.+++++|.+ + .+++++|+.++..++.+++++||+|+++++.|.++....... +...|.+++.++ .
T Consensus 3 l~~~la~~~g~~-~----~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~--~- 70 (331)
T 1pff_A 3 LEGKIAKLEHAE-A----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQ----LRKFGVEVDFID--M- 70 (331)
T ss_dssp HHHHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTH----HHHTTCEEEEEC--T-
T ss_pred HHHHHHHHhCCC-e----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHH----HHhcCCEEEEeC--C-
Confidence 457888888886 2 588888966888788889999999999998887764332110 112454444443 2
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHh-cCCEEEEeccccccccccCCCCCCCCcceEEE
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNK-QKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~-~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (286)
.|++++++.+++ ++++|+++ ++| +|...|+++|.++|++ +|+++|+|++|+.|...... .. ++|+++
T Consensus 71 -----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~---~~d~~~ 140 (331)
T 1pff_A 71 -----AVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DL---GVDIVV 140 (331)
T ss_dssp -----TSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GG---TCSEEE
T ss_pred -----CCHHHHHHhhcC-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hc---CCcEEE
Confidence 478899998887 89999997 666 7788899999999999 99999999999987654222 12 489999
Q ss_pred eCCCCCCCCCC---ceEEEEec-chhhhhcc
Q 023191 254 TTTHKSLRGPR---GAMIFFRK-GVKEINKQ 280 (286)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~-~~~~~~~~ 280 (286)
+|+||+|++|. +|++++++ ++.+..+.
T Consensus 141 ~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~ 171 (331)
T 1pff_A 141 HSATKYINGHTDVVAGLVCSRADIIAKVKSQ 171 (331)
T ss_dssp EETTTTTSSSSSCCCEEEEECHHHHHHHHHT
T ss_pred EECccccCCCCCceEEEEEeCcHHHHHHHHH
Confidence 99999998875 68999998 77665543
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-19 Score=161.26 Aligned_cols=162 Identities=15% Similarity=0.175 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEe
Q 023191 93 AESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (286)
Q Consensus 93 l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (286)
..+++++++++++|.+. .+++++|+.++..++.+++++||+|+++++.|+++...... .+...|.+++.++
T Consensus 65 ~~~~l~~~la~~~g~~~-----~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~----~~~~~g~~~~~v~ 135 (398)
T 2rfv_A 65 TTDALEKKLAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSH----SMPKFGINVRFVD 135 (398)
T ss_dssp HHHHHHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHT----HHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHH----HHHHcCCEEEEeC
Confidence 34455688888888762 48888877788778999999999999999887766432210 0134455454443
Q ss_pred cccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcce
Q 023191 173 YRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAD 250 (286)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D 250 (286)
.+ |++++++.+++ ++++|+++ ++| +|...|+++|.++|++||+++|+|++|+.+...... .. ++|
T Consensus 136 --~~------d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~---~~d 202 (398)
T 2rfv_A 136 --AA------KPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPL-QL---GAD 202 (398)
T ss_dssp --TT------SHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GG---TCS
T ss_pred --CC------CHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hh---CCc
Confidence 22 89999999987 89999997 666 678889999999999999999999999877543211 11 489
Q ss_pred EEEeCCCCCCCCCC---ceEEEEecchhh
Q 023191 251 VVTTTTHKSLRGPR---GAMIFFRKGVKE 276 (286)
Q Consensus 251 ~v~~s~~K~l~gp~---gG~l~~~~~~~~ 276 (286)
+++.|+||+|++|. +|++++++++.+
T Consensus 203 i~~~s~sK~~~~~g~~~~G~~~~~~~~~~ 231 (398)
T 2rfv_A 203 IVVHSVTKYINGHGDVIGGIIVGKQEFID 231 (398)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred EEEEeCcccccCCCCceEEEEEECHHHHH
Confidence 99999999998875 499999887654
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=165.00 Aligned_cols=227 Identities=11% Similarity=-0.006 Sum_probs=146.0
Q ss_pred ccChHHHHHHHHHHHHHHcCceecCCCCCC-----CHHHHHHh--ccccccCCCCCCCCCcccCCcchHHHHHHHHHHHH
Q 023191 29 VVDPEIADIIEHEKARQWKGLELIPSENFT-----SVSVMQAV--GSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (286)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~-----~~~v~~a~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (286)
...+..++.+.+. ......++|..|.+.. ++.+.+++ .+.+.+. ......|+...+..+++ +.+
T Consensus 17 ~~~~~~~~~~~~~-~~~~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~Y~~~~g~~~lr----~~i 87 (427)
T 3ppl_A 17 LFHEDIKRKFDEL-KSKNLKLDLTRGKPSSEQLDFADELLALPGKGDFKAAD----GTDVRNYGGLDGIVDIR----QIW 87 (427)
T ss_dssp HHHHHHHHHHHHH-HHTCCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTT----SCBTTSSCCSSCCHHHH----HHH
T ss_pred HhHHHHHHHHHHh-hcCCceEecCCCCCChHHCCCcHHHHHHhhhHHHhhcc----chhhcCCCCCCCcHHHH----HHH
Confidence 3334444444432 2334678998887632 22455555 4444331 11123355556677777 455
Q ss_pred HHHCCCCCCCcceeEEeCCChH-HH--HHHHHHhcC--C----------CCeEEeccCCCCcccCcccccccccccccee
Q 023191 102 LEAFRLDPEKWGVNVQSLSGSP-SN--FQVYTALLK--P----------HDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 102 ~~~~g~~~~~~~~~v~~~sG~~-a~--~~~l~a~~~--~----------Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
+++++++++ +|++|+|++ ++ .+++.++++ | ||+|++++|.|.+ +...+...|.
T Consensus 88 a~~~~~~~~----~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~--------~~~~~~~~g~ 155 (427)
T 3ppl_A 88 ADLLGVPVE----QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDR--------HFSITERFGF 155 (427)
T ss_dssp HHHHTSCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHH--------HHHHHHHTTC
T ss_pred HHHhCCCcc----eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHH--------HHHHHHHcCC
Confidence 555588775 599999999 66 257888877 6 9999999955544 3435556776
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc--CCC-CCCccCHH---HHHHHH-HhcCCEEEEecccccccccc
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG--ASA-YARLYDYE---RIRKVC-NKQKAIMLADMAHISGLVAA 239 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~--~~n-~g~~~~l~---~I~~ia-~~~~~~vivD~a~~~g~~~~ 239 (286)
+++.+| ++ ++ .+|+++|+++++..++++|++. ++| +|...+.+ +|+++| ++||+++|+|++|+...+..
T Consensus 156 ~~~~v~--~~-~~-g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~ 231 (427)
T 3ppl_A 156 EMISVP--MN-ED-GPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTD 231 (427)
T ss_dssp EEEEEE--EE-TT-EECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSS
T ss_pred EEEEeC--CC-CC-CCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCC
Confidence 666665 44 23 3999999999954478999875 455 67777766 888888 99999999999976433321
Q ss_pred CCC-CCC---------CCcceEEEeCCCCCC-CCCCceEEEEecchhhhhcc
Q 023191 240 GVI-PSP---------FEYADVVTTTTHKSL-RGPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 240 ~~~-~~~---------~~~~D~v~~s~~K~l-~gp~gG~l~~~~~~~~~~~~ 280 (286)
... ... ..+.++++.|++|++ +|.+.|++++++++.+..++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~ 283 (427)
T 3ppl_A 232 EFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTG 283 (427)
T ss_dssp CCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHH
T ss_pred CCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHH
Confidence 110 000 113678899999974 34455999999887765543
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=160.75 Aligned_cols=218 Identities=13% Similarity=0.041 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHH-HcCceecCCCC--C-----CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 023191 33 EIADIIEHEKARQ-WKGLELIPSEN--F-----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (286)
Q Consensus 33 ~~~~~~~~~~~~~-~~~i~L~~~e~--~-----~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (286)
.++.......... .+.|+|..+.. + ..+.+++++.+.+.+....+ |....+..++++++.+++.+.
T Consensus 14 ~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~------Y~~~~g~~~lr~~ia~~~~~~ 87 (401)
T 7aat_A 14 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKE------YLPIAGLADFTRASAELALGE 87 (401)
T ss_dssp HHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCC------CCCTTCCHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccC------CCCCCCCHHHHHHHHHHhcCC
Confidence 3444444432222 24689887763 1 23467887776654312222 334456778998888888877
Q ss_pred CCC--CCCCcceeEEe--CCChH-HHHHHHHHh---cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 105 FRL--DPEKWGVNVQS--LSGSP-SNFQVYTAL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 105 ~g~--~~~~~~~~v~~--~sG~~-a~~~~l~a~---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+|. +++ +|++ |+|++ ++.+++.++ ++|||+|++++|.|.++. ..+...|.+++.+++..
T Consensus 88 ~~~~~~~~----~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~--------~~~~~~g~~~~~~~~~~- 154 (401)
T 7aat_A 88 NSEAFKSG----RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHT--------PIFRDAGLQLQAYRYYD- 154 (401)
T ss_dssp TCHHHHTT----CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHH--------HHHHHTTCEEEEEECEE-
T ss_pred CccccccC----ceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHH--------HHHHHcCCeeEeeeeec-
Confidence 675 344 4766 99998 776566555 499999999996665543 34456676666666432
Q ss_pred CCCCCCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCC--CCC---
Q 023191 177 ESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGV--IPS--- 244 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~--~~~--- 244 (286)
.+++.+|++++++.+.+ .++++++++ ++| +|... ++++|+++|++||+++|+|++|...... +. ...
T Consensus 155 ~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~-~~~~~~~~~~ 233 (401)
T 7aat_A 155 PKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASG-DINRDAWALR 233 (401)
T ss_dssp TTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTS-CHHHHTHHHH
T ss_pred cccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCC-CccccHHHHH
Confidence 24688999988877753 267888887 666 66444 5788999999999999999997533221 10 000
Q ss_pred ---CCCcceEEEeCCCCCCC--CCCceEEEE
Q 023191 245 ---PFEYADVVTTTTHKSLR--GPRGAMIFF 270 (286)
Q Consensus 245 ---~~~~~D~v~~s~~K~l~--gp~gG~l~~ 270 (286)
......+++.|+||+|+ |.+-|++++
T Consensus 234 ~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~ 264 (401)
T 7aat_A 234 HFIEQGIDVVLSQSYAKNMGLYGERAGAFTV 264 (401)
T ss_dssp HHHHTTCCCEEEEECTTTSCCGGGCEEEEEE
T ss_pred HHHhcCCcEEEEecCCcccccccCceEEEEE
Confidence 00124588999999874 344588886
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=159.62 Aligned_cols=196 Identities=16% Similarity=0.114 Sum_probs=132.4
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.|+|..++++ +|+.+ + +.. ..+|+. .. ..+++ +.+++++|++++ +|++++|++
T Consensus 30 ~~i~l~~~~~~~~~~~~v--a----~~~--~~~Y~~------~~-~~~lr----~~la~~~~~~~~----~v~~~~G~~~ 86 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL--T----QQT--LNRYPE------CQ-PKAVI----ENYAQYAGVKPE----QVLVSRGADE 86 (356)
T ss_dssp CSEECSSCCCSSCCCCCC--C----CCC--TTSCCC------SS-CHHHH----HHHHHHHTSCGG----GEEEESHHHH
T ss_pred ceEEeeCCCCCCCCCHhH--h----hhh--hccCCC------cc-HHHHH----HHHHHHhCCChH----HEEEcCCHHH
Confidence 56899999985 34444 2 211 112322 12 34455 667777788764 599999998
Q ss_pred HHHHHHHHhcCCC-CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 SNFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 a~~~~l~a~~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++++++++| |+|+++++.|.++ ...+...|.+++.++ .+ +++.+|++++++.++ ++++|+++
T Consensus 87 ai~~~~~~~~~~g~d~Vl~~~p~~~~~--------~~~~~~~g~~~~~v~--~~-~~~~~d~~~l~~~i~--~~~~v~l~ 153 (356)
T 1fg7_A 87 GIELLIRAFCEPGKDAILYCPPTYGMY--------SVSAETIGVECRTVP--TL-DNWQLDLQGISDKLD--GVKVVYVC 153 (356)
T ss_dssp HHHHHHHHHCCTTTCEEEECSSSCTHH--------HHHHHHHTCEEEECC--CC-TTSCCCHHHHHTSCT--TEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCChHHH--------HHHHHHcCCEEEEee--CC-CCCCCCHHHHHHHhc--CCCEEEEe
Confidence 8877899999999 9999999655554 334455666555554 44 457899999998886 78999997
Q ss_pred -CCC-CCCccCHHHH---HHHHHhcCCEEEEeccccccccccCCCCC-CCCcceEEEeCCCCCCC--CCCceEEEEecch
Q 023191 203 -ASA-YARLYDYERI---RKVCNKQKAIMLADMAHISGLVAAGVIPS-PFEYADVVTTTTHKSLR--GPRGAMIFFRKGV 274 (286)
Q Consensus 203 -~~n-~g~~~~l~~I---~~ia~~~~~~vivD~a~~~g~~~~~~~~~-~~~~~D~v~~s~~K~l~--gp~gG~l~~~~~~ 274 (286)
++| +|...+.++| +++|+ +|+++|+|++|............ ...+.++++.|++|+|+ |.+.|++++++++
T Consensus 154 ~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 232 (356)
T 1fg7_A 154 SPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEV 232 (356)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHH
Confidence 655 6777775555 55566 89999999998743311111110 00136788999999884 4445999998887
Q ss_pred hhhhc
Q 023191 275 KEINK 279 (286)
Q Consensus 275 ~~~~~ 279 (286)
.+..+
T Consensus 233 ~~~l~ 237 (356)
T 1fg7_A 233 INLLM 237 (356)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=162.35 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=120.7
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
++++.+++++|.+. .+++++|+.++..++.+++++||+|+++++.|+++..++.. .+...|.+++.++ .
T Consensus 66 ~l~~~ia~~~g~~~-----~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~----~~~~~g~~~~~v~--~ 134 (404)
T 1e5e_A 66 NLEGKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEH----ALTKFGIQVDFIN--T 134 (404)
T ss_dssp HHHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHT----HHHHTTCEEEEEC--T
T ss_pred HHHHHHHHHhCCCc-----EEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHH----HHHHcCCEEEEEC--C
Confidence 34477777778752 36666665588778899999999999999777765442210 1334565554443 3
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHh-cCCEEEEeccccccccccCCCCCCCC-cceE
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNK-QKAIMLADMAHISGLVAAGVIPSPFE-YADV 251 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~-~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~ 251 (286)
+ |++++++.+++ +||+|+++ ++| +|.+.|+++|+++|++ +|+++|+|++|+.+.... ++. ++|+
T Consensus 135 ~------d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~-----~~~~~~di 202 (404)
T 1e5e_A 135 A------IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITN-----PVDFGVDV 202 (404)
T ss_dssp T------STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCC-----GGGGTCSE
T ss_pred C------CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCC-----ccccCCEE
Confidence 2 78899999987 89999997 666 7788899999999999 999999999998765321 112 4899
Q ss_pred EEeCCCCCCCCCC---ceEEEEecchhh-hhc
Q 023191 252 VTTTTHKSLRGPR---GAMIFFRKGVKE-INK 279 (286)
Q Consensus 252 v~~s~~K~l~gp~---gG~l~~~~~~~~-~~~ 279 (286)
++.|+||+|++|. +|++++++++.+ ..+
T Consensus 203 ~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~ 234 (404)
T 1e5e_A 203 VVHSATKYINGHTDVVAGLICGKADLLQQIRM 234 (404)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECHHHHHHHHH
T ss_pred EEEcCccccCCCCCCeEEEEEECHHHHHHHHH
Confidence 9999999998875 499999987655 444
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-19 Score=163.72 Aligned_cols=232 Identities=15% Similarity=0.019 Sum_probs=146.0
Q ss_pred cccccccChHHHHHHHHHHHHHHcCceecCCCCC-----CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENF-----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQ 98 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~-----~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (286)
++.+......++....+.. .....++|..++++ +++.+++++.+.+.... + .....|+...+..+++
T Consensus 11 ~~~l~~~~~~~~~~~~~l~-~~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~Y~~~~G~~~lr---- 82 (422)
T 3d6k_A 11 AARLAQVREEVTAKYAELK-AKNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKD--G-VDCRNYGGLLGIADIR---- 82 (422)
T ss_dssp -------CHHHHHHHHHHH-HTTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTT--C-CBTTSSCCSSCCHHHH----
T ss_pred HHHHHhhHHHHHHHHHHHh-ccCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhcc--c-hhhhCCCCCCCCHHHH----
Confidence 4556667778888766643 34567899998884 34466666655421100 0 0011245555666777
Q ss_pred HHHHHHCCCCCCCcceeEEeCCChH-HH--HHHHHHhcCC------------CCeEEeccCCCCcccCcccccccccccc
Q 023191 99 KRALEAFRLDPEKWGVNVQSLSGSP-SN--FQVYTALLKP------------HDRIMALDLPHGGHLSHGYQTDTKKISA 163 (286)
Q Consensus 99 ~~~~~~~g~~~~~~~~~v~~~sG~~-a~--~~~l~a~~~~------------Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (286)
+.++++++++++ +|++|+|++ ++ .+++.++.++ ||+|++++|.|.+ +...+..
T Consensus 83 ~~ia~~~~~~~~----~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~--------~~~~~~~ 150 (422)
T 3d6k_A 83 ELWAEALGLPAD----LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDR--------HFTITEH 150 (422)
T ss_dssp HHHHHHHTCCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHH--------HHHHHHH
T ss_pred HHHHHHhCCChh----HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHH--------HHHHHHH
Confidence 445555578765 599999999 65 4466777665 3479999955444 4435556
Q ss_pred ceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE-Ec-CCC-CCCccCHH---HHHHHHH-hcCCEEEEeccccc-c
Q 023191 164 VSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV-AG-ASA-YARLYDYE---RIRKVCN-KQKAIMLADMAHIS-G 235 (286)
Q Consensus 164 ~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~-i~-~~n-~g~~~~l~---~I~~ia~-~~~~~vivD~a~~~-g 235 (286)
.|.+++.+++ +. + .+|++++++.+++.++|+|+ ++ ++| +|...+.+ +|+++|+ +||+++|+|++|+. +
T Consensus 151 ~g~~~~~v~~--~~-~-g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~ 226 (422)
T 3d6k_A 151 FGFEMINVPM--TD-E-GPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHT 226 (422)
T ss_dssp HTCEEEEEEE--ET-T-EECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred cCCEEEecCC--CC-C-CCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccc
Confidence 7766666654 42 2 39999999999754788888 45 666 77777765 7778888 99999999999874 2
Q ss_pred ccccCCCCCCC---------CcceEEEeCCCCCC-CCCCceEEEEecchhhhhc
Q 023191 236 LVAAGVIPSPF---------EYADVVTTTTHKSL-RGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 236 ~~~~~~~~~~~---------~~~D~v~~s~~K~l-~gp~gG~l~~~~~~~~~~~ 279 (286)
....+....++ ...++++.|++|++ +|.+.|++++++++.+..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~~l~~~l~ 280 (422)
T 3d6k_A 227 LSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEWYA 280 (422)
T ss_dssp SSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCHHHHHHHH
T ss_pred cCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCHHHHHHHH
Confidence 22211111111 13578899999963 3445699999988766554
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-20 Score=165.16 Aligned_cols=202 Identities=10% Similarity=0.108 Sum_probs=139.6
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCC---cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh-H
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG---NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS-P 123 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~-~ 123 (286)
.++++++..++|+.+++++.+.+.+ + ..++...|.. ..+..++.+++++++++++|++.. .+|++++|+ +
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---~~v~~~~g~gt 77 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLN-F--NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND---YQILFLQGGAS 77 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSS-S--TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT---EEEEEESSHHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhh-h--ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC---ceEEEECCcch
Confidence 5778888888999999999988754 2 1111111111 344556777788999999999632 369999998 7
Q ss_pred -HHHHHHHHhcCC---CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHH-HhhhcCCcE
Q 023191 124 -SNFQVYTALLKP---HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEK-SATLFRPKL 198 (286)
Q Consensus 124 -a~~~~l~a~~~~---Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~-~i~~~~tk~ 198 (286)
++.+++.+++.+ ||.|+++.+.|.+ .. .+...| +++.+++ +++++.+|++++++ ++++ +||+
T Consensus 78 ~al~~~~~~l~~~~~~g~~vi~~~~~~~~--------~~-~~~~~g-~~~~v~~--~~~~~~~d~~~l~~~~i~~-~~k~ 144 (360)
T 1w23_A 78 LQFTMLPMNLLTKGTIGNYVLTGSWSEKA--------LK-EAKLLG-ETHIAAS--TKANSYQSIPDFSEFQLNE-NDAY 144 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHH--------HH-HHHTTS-EEEEEEE--CGGGTSCSCCCGGGCCCCT-TEEE
T ss_pred HHHHHHHHHhcCCCCcccEEEecchhHHH--------HH-HHHHhC-CeEEeec--ccccCcCCccchHhhccCC-CCCE
Confidence 888788888765 5667766533322 11 133456 6666664 32244578899988 7876 8999
Q ss_pred EEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchh
Q 023191 199 IVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (286)
Q Consensus 199 v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (286)
|+++ ++| +|...+ +++++||+++|+|++|+.+....++ ...|++++|+||+|+ |.| |++++++++.
T Consensus 145 v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~~~~-----~~~di~~~s~sK~~~-~~G~G~~~~~~~~~ 213 (360)
T 1w23_A 145 LHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRPLKV-----NQFGMIYAGAQKNLG-PSGVTVVIVKKDLL 213 (360)
T ss_dssp EEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSCCCG-----GGCSEEEEETTTTTS-CTTCEEEEEEHHHH
T ss_pred EEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCCcCc-----ccCCEEEEEcccccC-CCCcEEEEEcHHHH
Confidence 9987 555 676655 3334899999999999887654322 224899999999885 768 9999998766
Q ss_pred hhhc
Q 023191 276 EINK 279 (286)
Q Consensus 276 ~~~~ 279 (286)
+..+
T Consensus 214 ~~~~ 217 (360)
T 1w23_A 214 NTKV 217 (360)
T ss_dssp CSCC
T ss_pred hhcc
Confidence 5443
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-19 Score=160.62 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 94 ESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 94 ~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
.+++++++++++|.+. .+++++|+.++.+++.+++++||+|+++++.|.++...... .....|.+++.++
T Consensus 83 ~~~l~~~la~~~g~~~-----~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~----~~~~~g~~~~~v~- 152 (414)
T 3ndn_A 83 VSVFEERLRLIEGAPA-----AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSE----ILPRWGVQTVFVD- 152 (414)
T ss_dssp HHHHHHHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHT----HHHHTTCEEEEEC-
T ss_pred HHHHHHHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHH----HHHHcCcEEEEeC-
Confidence 3445588888888643 35666665588878999999999999999777765432210 1122455454443
Q ss_pred ccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceE
Q 023191 174 RLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADV 251 (286)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~ 251 (286)
.+ |++++++++++ +|++|+++ ++| +|...++++|+++|+++|+++|+|++|+.+.....+ .. ++|+
T Consensus 153 -~~------d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~-~~---g~di 220 (414)
T 3ndn_A 153 -GD------DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF-PL---GVDV 220 (414)
T ss_dssp -TT------CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG-GG---TCSE
T ss_pred -CC------CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch-hc---CCCe
Confidence 32 89999999987 89999997 666 778899999999999999999999999866543221 11 4899
Q ss_pred EEeCCCCCCCCCC---ceEEEEecchh
Q 023191 252 VTTTTHKSLRGPR---GAMIFFRKGVK 275 (286)
Q Consensus 252 v~~s~~K~l~gp~---gG~l~~~~~~~ 275 (286)
++.|++|+|+++. +|+++++++..
T Consensus 221 v~~S~sK~l~~~G~~~~G~vv~~~~~~ 247 (414)
T 3ndn_A 221 VVYSGTKHIDGQGRVLGGAILGDREYI 247 (414)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECHHHH
T ss_pred EeccCCccccCCCCceEEEEEECHHHH
Confidence 9999999997744 69999987644
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-19 Score=159.79 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 94 ESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 94 ~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
.+++++.+++++|.+. .+++++|+.++..++.+++++||+|+++++.|+++....... ....|.+++.++
T Consensus 67 ~~~l~~~la~~~g~~~-----~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~----~~~~g~~~~~~~- 136 (398)
T 1gc0_A 67 LNLLEARMASLEGGEA-----GLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHG----IGEFGVKLRHVD- 136 (398)
T ss_dssp HHHHHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHT----GGGGTCEEEEEC-
T ss_pred HHHHHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHH----HHHcCCEEEEEC-
Confidence 3345578888888762 588888866888799999999999999998888765432111 123454444343
Q ss_pred ccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceE
Q 023191 174 RLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADV 251 (286)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~ 251 (286)
. .|++++++.+++ +|++|+++ ++| +|...|+++|+++|++||+++|+|++|+.+.....+ .. ++|+
T Consensus 137 -~------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~-~~---~~d~ 204 (398)
T 1gc0_A 137 -M------ADLQALEAAMTP-ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPL-EL---GADL 204 (398)
T ss_dssp -T------TCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGG-GG---TCSE
T ss_pred -C------CCHHHHHHhcCC-CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCch-hh---CceE
Confidence 2 289999999987 89999997 666 678889999999999999999999999877653221 11 4899
Q ss_pred EEeCCCCCCCCCC---ceEEEEecchh
Q 023191 252 VTTTTHKSLRGPR---GAMIFFRKGVK 275 (286)
Q Consensus 252 v~~s~~K~l~gp~---gG~l~~~~~~~ 275 (286)
++.|+||+|+||. ||++++++++.
T Consensus 205 ~~~S~sK~~~~~~~~~~G~l~~~~~~~ 231 (398)
T 1gc0_A 205 VVHSATKYLSGHGDITAGIVVGSQALV 231 (398)
T ss_dssp EEEETTTTTTCSSSCCCEEEEECHHHH
T ss_pred EEECCccccCCCCCCeEEEEEEChHHH
Confidence 9999999998876 59999987644
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-19 Score=163.91 Aligned_cols=214 Identities=14% Similarity=0.066 Sum_probs=147.5
Q ss_pred HcCceecCCCC-C--CCHHH--HHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHC-CCCCCCccee---E
Q 023191 46 WKGLELIPSEN-F--TSVSV--MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAF-RLDPEKWGVN---V 116 (286)
Q Consensus 46 ~~~i~L~~~e~-~--~~~~v--~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~---v 116 (286)
.+.++|..+++ . .++.+ ++++.+.+......+ |+...+..++++++.+++.+.. ++++ .+ |
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~------y~~~~g~~~lr~~ia~~~~~~~~~~~~----~~~~~i 116 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFP------YAPPQGIEELRDLWQQKMLRDNPELSI----DNMSRP 116 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSS------CCCTTCCHHHHHHHHHHHHHHCTTCCG----GGBCCC
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccc------cCCCCCCHHHHHHHHHHHhccCcccCC----CccceE
Confidence 46789988877 3 24555 777777654311112 3334556788888888776664 4444 36 8
Q ss_pred EeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCcccccccccccc-ceeeeEEEecccCCCCCCCCHHHHHHHhhhc
Q 023191 117 QSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISA-VSIFFETMPYRLNESTGYIDYDQLEKSATLF 194 (286)
Q Consensus 117 ~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~ 194 (286)
++|+|++ ++.+++.++++|||+|+++++.|.++. ..+.. .|.+++.++ .+.+++.+|++++++.+++.
T Consensus 117 ~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~--------~~~~~~~g~~~~~~~--~~~~~~~~d~~~l~~~l~~~ 186 (430)
T 2x5f_A 117 IVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYK--------LVFNTRNGANLQTYP--IFDKDGHYTTDSLVEALQSY 186 (430)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHH--------HHHTTTTCCEEEEEC--CBCTTSCBCSHHHHHHHHHC
T ss_pred EEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHH--------HHHHHhcCCeEEEEe--ccCccCCcCHHHHHHHHHhc
Confidence 9999988 888899999999999999996665543 23445 666565554 44324789999999998753
Q ss_pred --CCcEEEEc-CCC-CCCccC---HHHHHHHHHh-----cCCEEEEeccccccccccCCCCC---CC---Ccc---eEEE
Q 023191 195 --RPKLIVAG-ASA-YARLYD---YERIRKVCNK-----QKAIMLADMAHISGLVAAGVIPS---PF---EYA---DVVT 253 (286)
Q Consensus 195 --~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~-----~~~~vivD~a~~~g~~~~~~~~~---~~---~~~---D~v~ 253 (286)
++++++++ |+| +|...+ +++|+++|++ ||+++|+|++|+........... .+ ... ++++
T Consensus 187 ~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 266 (430)
T 2x5f_A 187 NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRL 266 (430)
T ss_dssp CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEE
T ss_pred CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEE
Confidence 67888887 766 677777 8899999999 99999999998754332111111 11 124 6789
Q ss_pred eCCCCCCCCC--CceEEEE---ecchhhhhc
Q 023191 254 TTTHKSLRGP--RGAMIFF---RKGVKEINK 279 (286)
Q Consensus 254 ~s~~K~l~gp--~gG~l~~---~~~~~~~~~ 279 (286)
.|+||+|+.| +.|++++ ++++.+..+
T Consensus 267 ~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~ 297 (430)
T 2x5f_A 267 DGATKEFFAWGFRVGFMTFGTSDQTTKEVLE 297 (430)
T ss_dssp EEHHHHTTCGGGCCEEEEEBCCCHHHHHHHH
T ss_pred EecccCCCCCCCCeEEEEEecCCHHHHHHHH
Confidence 9999988533 3499999 777765554
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=157.56 Aligned_cols=161 Identities=20% Similarity=0.158 Sum_probs=120.7
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
.+++.++++++.+ + .|++++|+.++..++.+++++||+|+++.+.|.+...+... .+...|.+++.++ .
T Consensus 56 ~l~~~la~~~~~~-~----~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~----~~~~~g~~~~~~~--~ 124 (386)
T 1cs1_A 56 VVQRALAELEGGA-G----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDS----LAKRGCYRVLFVD--Q 124 (386)
T ss_dssp HHHHHHHHHHTCS-E----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHH----HHTTTSCEEEEEC--T
T ss_pred HHHHHHHHHhCCC-c----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHH----HHHhcCCEEEEeC--C
Confidence 3447777788876 2 58889995588878899999999999999888764432210 1123454444443 2
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEE
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (286)
.|++++++.+++ ++++|+++ ++| +|...++++|.++|++||+++|+|++|+.+...... .. ++|+++
T Consensus 125 ------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~---~~di~~ 193 (386)
T 1cs1_A 125 ------GDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-AL---GADLVL 193 (386)
T ss_dssp ------TCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GG---TCSEEE
T ss_pred ------CCHHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-cc---CceEEE
Confidence 289999999987 89999998 556 678889999999999999999999999876543221 11 489999
Q ss_pred eCCCCCCCCCCc---eEEEEec-chhhhh
Q 023191 254 TTTHKSLRGPRG---AMIFFRK-GVKEIN 278 (286)
Q Consensus 254 ~s~~K~l~gp~g---G~l~~~~-~~~~~~ 278 (286)
+|+||+|++|.+ |++++++ ++.+..
T Consensus 194 ~s~sK~~~~~~~~~~G~~~~~~~~l~~~l 222 (386)
T 1cs1_A 194 HSCTKYLNGHSDVVAGVVIAKDPDVVTEL 222 (386)
T ss_dssp EETTTTTTCSSCCCCEEEEESSHHHHHHH
T ss_pred EcCcccccCCCCceeEEEEeCcHHHHHHH
Confidence 999999988764 9999987 665544
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=154.18 Aligned_cols=202 Identities=13% Similarity=0.073 Sum_probs=137.6
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.|+|..++++ +++.+++++.+.+.... +|+. .+..+++ +.++++++++++ +|++|+|++
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~--~y~~-------~~~~~l~----~~la~~~~~~~~----~i~~~~g~t 88 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGIKNLG--VYPD-------VNYRRLN----KSIENYLKLKDI----GIVLGNGAS 88 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHHHGGG--SCCC-------TTCHHHH----HHHHHHHTCCSC----EEEEESSHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHhc--CCCC-------ccHHHHH----HHHHHHhCCCcc----eEEEcCCHH
Confidence 467999988875 58999999988775421 2322 2334444 777777788764 599999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.++ |+|+++.+.|.++. ..+...|.+++.++ .+ ++..+|++++++.+++ +++|+++
T Consensus 89 ~al~~~~~~~----d~vi~~~~~~~~~~--------~~~~~~g~~~~~~~--~~-~~~~~~~~~l~~~l~~--~~~v~i~ 151 (361)
T 3ftb_A 89 EIIELSISLF----EKILIIVPSYAEYE--------INAKKHGVSVVFSY--LD-ENMCIDYEDIISKIDD--VDSVIIG 151 (361)
T ss_dssp HHHHHHHTTC----SEEEEEESCCTHHH--------HHHHHTTCEEEEEE--CC-TTSCCCHHHHHHHTTT--CSEEEEE
T ss_pred HHHHHHHHHc----CcEEEecCChHHHH--------HHHHHcCCeEEEee--cC-cccCCCHHHHHHhccC--CCEEEEe
Confidence 777666666 99999996665543 24445676666565 44 3456788999999976 8999987
Q ss_pred -CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccc--cCCCCC-CCCcceEEEeCCCCCCC--CCCceEEE-Ee
Q 023191 203 -ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVA--AGVIPS-PFEYADVVTTTTHKSLR--GPRGAMIF-FR 271 (286)
Q Consensus 203 -~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~--~~~~~~-~~~~~D~v~~s~~K~l~--gp~gG~l~-~~ 271 (286)
++| +|...+ +++|+++|++||+++|+|++|+..... ...... .....++++.|++|+++ |.+.|+++ .+
T Consensus 152 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~ 231 (361)
T 3ftb_A 152 NPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNN 231 (361)
T ss_dssp TTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESC
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCC
Confidence 666 666654 667888888999999999998754432 010000 00124577999999885 33448888 66
Q ss_pred cchhhhhccC
Q 023191 272 KGVKEINKQG 281 (286)
Q Consensus 272 ~~~~~~~~~~ 281 (286)
+++.+..++.
T Consensus 232 ~~~~~~~~~~ 241 (361)
T 3ftb_A 232 KEIAAKIKAK 241 (361)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 6777666543
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-20 Score=168.98 Aligned_cols=206 Identities=9% Similarity=0.017 Sum_probs=136.2
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCC-cccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChH-
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGA-RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~- 123 (286)
+...++++..++|++|+++|.+.+.+.+..+.+.. ..+. .....++-+.+|+.+++++|++.+ .+|++ |+|+|
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~-~~~~~~~~~~ar~~la~ll~~~~~---~evif~t~~~T~ 102 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHR-GKEFIQVAEEAEQDFRDLLNIPSN---YKVLFCHGGGRG 102 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC------------------------CCHHHHHHHHHHHTCCTT---EEEEEEESCTTH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCC-CHHHHHHHHHHHHHHHHHhCCCCC---ceEEEEcCCchH
Confidence 35667788889999999999998866332111100 0011 122234455678999999999542 25887 56777
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.+++..++++||+|++....+-++ ++.. .+...| .++.++.+...++..+|++++++++++ +|++|.++
T Consensus 103 a~n~ai~~l~~~gd~v~~~~~~~~~~--~~~~----~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~-~t~lV~~~h 174 (386)
T 3qm2_A 103 QFAGVPLNLLGDKTTADYVDAGYWAA--SAIK----EAKKYC-APQIIDAKITVDGKRAVKPMREWQLSD-NAAYLHYCP 174 (386)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSHHHH--HHHH----HHTTTS-EEEEEECEEEETTEEEECCGGGCCCCT-TCSCEEECS
T ss_pred HHHHHHHhccCCCCeEEEEeCCHHHH--HHHH----HHHHhC-CeEEEecCcccCCCCCCchHHHhhcCC-CCcEEEEEC
Confidence 77778899999999988766444443 2221 122345 566666431012223677788877877 89998886
Q ss_pred CCC-CCCc-cCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchh
Q 023191 203 ASA-YARL-YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVK 275 (286)
Q Consensus 203 ~~n-~g~~-~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~ 275 (286)
.+| +|.. .|+++|. +|+++++|++|++|..+.++..+ |++++|+|||+ ||.| |++++++++.
T Consensus 175 ~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~-----~~~~~s~hK~l-GP~G~g~l~v~~~~~ 239 (386)
T 3qm2_A 175 NETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRY-----GVIYAGAQKNI-GPAGLTLVIVREDLL 239 (386)
T ss_dssp EETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGC-----SEEEEETTTTT-CCTTEEEEEEEGGGC
T ss_pred CcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcccc-----CEEEEeccccc-CCCccEEEEECHHHH
Confidence 333 6875 8888875 79999999999999998877654 36789999999 7999 9999998864
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-19 Score=161.58 Aligned_cols=204 Identities=13% Similarity=0.075 Sum_probs=133.5
Q ss_pred cCceecCCCCCC--CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHH
Q 023191 47 KGLELIPSENFT--SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPS 124 (286)
Q Consensus 47 ~~i~L~~~e~~~--~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a 124 (286)
..+.+..++++. ++.+++++.+.+... .|+......+++ +++++++|.+. .+++++|+.+
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~~~~~---------~~~~~~~~~~l~----~~la~~~~~~~-----~i~~~~g~~a 75 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDNLESD---------IYGNGAVIEDFE----TKIAKILGKQS-----AVFFPSGTMA 75 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTTCBCC---------BTTBSHHHHHHH----HHHHHHHTCSE-----EEEESCHHHH
T ss_pred chhhcCCCccccCCCHHHHHHHHhhcccC---------cccCCHHHHHHH----HHHHHHhCCCc-----EEEeCCHHHH
Confidence 446667788875 788888887744321 123334444555 77888888764 3777666668
Q ss_pred HHHHHHHhcCCCCe--EEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 125 NFQVYTALLKPHDR--IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 125 ~~~~l~a~~~~Gd~--Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
+..++.+++.+||+ |++..+.|........ .....|..++.+ +. +++.+|+++++++ .+ ++++|+++
T Consensus 76 ~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~-----~~~~~g~~~~~v--~~--~~~~~d~~~l~~~-~~-~~~~v~~~ 144 (359)
T 3pj0_A 76 QQIALRIWADRKENRRVAYHPLSHLEIHEQDG-----LKELQQITPLLL--GT--ANQLLTIDDIKSL-RE-PVSSVLIE 144 (359)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCHHHHSSTTH-----HHHHHCCEEEEC--SC--TTSCCCHHHHHTC-SS-CCSEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEeccceeeehhcch-----HHHhcCceEEec--CC--cCCCcCHHHHHhc-cC-CceEEEEE
Confidence 87788999999987 4444432222111000 012345544444 33 3578999999988 54 89999998
Q ss_pred -CCC-C-CCccCHH---HHHHHHHhcCCEEEEeccccccccc-cCCCCCCC-CcceEEEeCCCCCCCCCCceEEEEecch
Q 023191 203 -ASA-Y-ARLYDYE---RIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGV 274 (286)
Q Consensus 203 -~~n-~-g~~~~l~---~I~~ia~~~~~~vivD~a~~~g~~~-~~~~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~ 274 (286)
++| + |...+.+ +|+++|++||++||+|++|..+... .+.....+ .++|+++.|+||+|++|.||+++.++++
T Consensus 145 ~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~l 224 (359)
T 3pj0_A 145 LPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGNDDF 224 (359)
T ss_dssp SSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEECHHH
T ss_pred ecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEECCHHH
Confidence 555 3 5666655 5599999999999999998655421 11111111 2479999999999999977888888887
Q ss_pred hhhhc
Q 023191 275 KEINK 279 (286)
Q Consensus 275 ~~~~~ 279 (286)
.+..+
T Consensus 225 ~~~~~ 229 (359)
T 3pj0_A 225 VQEAK 229 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=158.77 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=119.1
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
+++.+++++|.+. .|++++|+.++.+++. ++++||+|+++++.|+++..... ..+...|.+++.++ .+
T Consensus 72 l~~~la~~~g~~~-----~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~----~~~~~~G~~v~~v~--~~ 139 (403)
T 3cog_A 72 LEKAVAALDGAKY-----CLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFR----QVASEFGLKISFVD--CS 139 (403)
T ss_dssp HHHHHHHHHTCSE-----EEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHH----HTGGGGTCEEEEEC--TT
T ss_pred HHHHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHH----HHHHHcCCEEEEEC--CC
Confidence 4477777788762 5999999777776777 89999999999988876543221 11234565554443 32
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcC-CEEEEeccccccccccCCCCCCCC-cceEE
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQK-AIMLADMAHISGLVAAGVIPSPFE-YADVV 252 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~-~~vivD~a~~~g~~~~~~~~~~~~-~~D~v 252 (286)
|++++++.+++ +|++|+++ ++| +|...|+++|+++|+++| +++|+|++|+.+.... ++. ++|++
T Consensus 140 ------d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~-----~~~~~~div 207 (403)
T 3cog_A 140 ------KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQR-----PLALGADIS 207 (403)
T ss_dssp ------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCC-----TTTTTCSEE
T ss_pred ------CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCC-----ccccCCeEE
Confidence 89999999987 89999997 666 778889999999999999 9999999988765321 122 58999
Q ss_pred EeCCCCCCCCCC---ceEEEEe-cchhhhh
Q 023191 253 TTTTHKSLRGPR---GAMIFFR-KGVKEIN 278 (286)
Q Consensus 253 ~~s~~K~l~gp~---gG~l~~~-~~~~~~~ 278 (286)
+.|+||+|+||. +|+++++ +++.+.+
T Consensus 208 ~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l 237 (403)
T 3cog_A 208 MYSATKYMNGHSDVVMGLVSVNCESLHNRL 237 (403)
T ss_dssp EEETTTTTTCSSCCCCEEEEECCHHHHHHH
T ss_pred EEcChhhccCCCCCeEEEEEECcHHHHHHH
Confidence 999999999886 4999996 4555443
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=156.47 Aligned_cols=205 Identities=16% Similarity=0.091 Sum_probs=138.6
Q ss_pred ceecCCCC-C--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHH
Q 023191 49 LELIPSEN-F--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSN 125 (286)
Q Consensus 49 i~L~~~e~-~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~ 125 (286)
+++..+++ . .+|.+++++.+.+.+...........|+......+++ +.+++++|.+ .+|++++|++++
T Consensus 49 i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~la~~~~~~-----~~i~~~sG~~a~ 119 (401)
T 2bwn_A 49 TVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLE----AEIAGLHQKE-----AALVFSSAYNAN 119 (401)
T ss_dssp EECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHH----HHHHHHTTCS-----EEEEESCHHHHH
T ss_pred EEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHH----HHHHHHhCCC-----cEEEECCcHHHH
Confidence 56655554 2 4678999998887652110000111233334455555 7777888863 269999999877
Q ss_pred HHHHHHh--cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh---cCCcEEE
Q 023191 126 FQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIV 200 (286)
Q Consensus 126 ~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~tk~v~ 200 (286)
..++.++ ..|||+|+++.+.|+++..+ +...|.+++.++ .+ |++++++.++. .++++|+
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~--------~~~~g~~~~~v~--~~------d~~~le~~l~~~~~~~~~~v~ 183 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHASMIEG--------IKRNAGPKRIFR--HN------DVAHLRELIAADDPAAPKLIA 183 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHHH--------HHHSCCCEEEEC--TT------CHHHHHHHHHHSCTTSCEEEE
T ss_pred HHHHHHHhcCCCCCEEEECchhhHHHHHH--------HHHcCCeEEEEc--CC------CHHHHHHHHHhhccCCceEEE
Confidence 7566655 36999999999777766542 334565555554 32 78999998872 2789998
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEecccccccccc-CC--C-CCCC-CcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA-GV--I-PSPF-EYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~-~~--~-~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
++ ++| +|...|+++|.++|++||+++|+|++|+.|.... +. . ...+ ...|+++.|++|+|++ .||+++++++
T Consensus 184 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~GG~~~~~~~ 262 (401)
T 2bwn_A 184 FESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASAR 262 (401)
T ss_dssp EESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECHH
T ss_pred EecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-CCCEEecCHH
Confidence 87 556 7788999999999999999999999999765421 10 0 0111 1258999999999975 4589888877
Q ss_pred hhhhhc
Q 023191 274 VKEINK 279 (286)
Q Consensus 274 ~~~~~~ 279 (286)
+.+..+
T Consensus 263 ~~~~l~ 268 (401)
T 2bwn_A 263 MVDAVR 268 (401)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-20 Score=170.23 Aligned_cols=213 Identities=15% Similarity=0.109 Sum_probs=147.5
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEeCCCh
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSLSGS 122 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~~sG~ 122 (286)
+.++|..+++ .+++.+++++.+.+.... .+| +.. ..++++++.+++++.+|. +++ +|++++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y------~~~--~~~l~~~la~~l~~~~g~~~~~~----~v~~~~g~ 98 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLV-YGY------TYA--SDELLQAVLDWEKSEHQYSFDKE----DIVFVEGV 98 (392)
Confidence 5678877776 467889999988775411 122 221 567888888888888884 443 59999998
Q ss_pred H-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 123 P-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 123 ~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
+ ++.+++.+++++||+|+++.+.|.++.. .+...|.+++.+++.....++.+|++++++.+++.++++|++
T Consensus 99 ~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~--------~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (392)
T 3b1d_A 99 VPAISIAIQAFTKEGEAVLINSPVYPPFAR--------SVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLL 170 (392)
Confidence 8 8887889999999999999966655432 444556555555432111136789999999987447899888
Q ss_pred c-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCC--CCC----CcceEEEeCCCCCCC--CCCceEE
Q 023191 202 G-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPF----EYADVVTTTTHKSLR--GPRGAMI 268 (286)
Q Consensus 202 ~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~--~~~----~~~D~v~~s~~K~l~--gp~gG~l 268 (286)
+ ++| +|... ++++|+++|++||+++|+|++|........... ..+ ...++++.|++|+|+ |.+.|++
T Consensus 171 ~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 250 (392)
T 3b1d_A 171 CNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYA 250 (392)
Confidence 7 555 56544 488999999999999999999875433211110 001 124588999999984 4456999
Q ss_pred EEecc-hhhhhcc
Q 023191 269 FFRKG-VKEINKQ 280 (286)
Q Consensus 269 ~~~~~-~~~~~~~ 280 (286)
+++++ +.+..++
T Consensus 251 ~~~~~~~~~~~~~ 263 (392)
T 3b1d_A 251 IIENPTLCAQFKH 263 (392)
Confidence 98654 7665553
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-19 Score=161.06 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=118.6
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
++++++++++|.+. .+++++|+.++.+++.++++|||+|+++++.|.++..... ..+...|.+++.++ .
T Consensus 86 ~le~~lA~l~g~~~-----~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~----~~~~~~G~~~~~v~--~ 154 (430)
T 3ri6_A 86 DLEQRLKNLTGALG-----VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQ----KTLPSFGIEVRFVD--V 154 (430)
T ss_dssp HHHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----THHHHTTCEEEEEC--T
T ss_pred HHHHHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH----HHHHHcCCEEEEeC--C
Confidence 34478888888754 4888888778887899999999999999977776543221 12234455454443 3
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEE
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVV 252 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v 252 (286)
+ |++++++++++ +|++|+++ ++| +|...|+++|+++|+++|+++|+|++|+.+... .+.. ++|++
T Consensus 155 ~------d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~-----~~~~~g~div 222 (430)
T 3ri6_A 155 M------DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLL-----EAKRLGVDIE 222 (430)
T ss_dssp T------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTC-----CGGGGTCSEE
T ss_pred C------CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC-----ChHHcCCEEE
Confidence 2 89999999987 89999997 667 778899999999999999999999998876541 1222 58999
Q ss_pred EeCCCCCCCCC---CceEEEEecc
Q 023191 253 TTTTHKSLRGP---RGAMIFFRKG 273 (286)
Q Consensus 253 ~~s~~K~l~gp---~gG~l~~~~~ 273 (286)
+.|++|+|+|+ .||+++.+.+
T Consensus 223 ~~S~sK~l~g~g~~~gG~vv~~~~ 246 (430)
T 3ri6_A 223 VLSSTKFISGGGTSVGGVLIDHGL 246 (430)
T ss_dssp EEECCCEEETTEEECCEEEEECSC
T ss_pred EECCcccccCCCCceEEEEEECCh
Confidence 99999999887 5688886543
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-19 Score=167.84 Aligned_cols=207 Identities=13% Similarity=0.122 Sum_probs=142.1
Q ss_pred cCceecCCCC-CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH-CC-CCCCCcceeEEeCCChH
Q 023191 47 KGLELIPSEN-FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA-FR-LDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~g-~~~~~~~~~v~~~sG~~ 123 (286)
+.++|..+++ ..++.+++++.+.+... +| +.+..+..++++++.+++.+. .+ +..+. ..+|++|+|++
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~~~~---~y-----~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~-~~~i~~t~G~t 174 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGAVAN---NY-----PVPDRCLVNTEKIINYFLQELSYKDANLAE-QTDLFPTEGGT 174 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHTC---SC-----CSSSSCCHHHHHHHHHHHHHHHTTTCCCGG-GEEEEEEEHHH
T ss_pred hheeccCCCCCcCCcHHHHHHHHHHHhC---CC-----CCCcccHHHHHHHHHHHHHHhcCCCCCCCC-cceEEEECCHH
Confidence 3466765555 24566777666655431 22 223456678999999998776 33 33210 03699999999
Q ss_pred -HHHHHHHH-----hcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC-CCCCCCCHHHHHHHhhhcCC
Q 023191 124 -SNFQVYTA-----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN-ESTGYIDYDQLEKSATLFRP 196 (286)
Q Consensus 124 -a~~~~l~a-----~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~d~e~l~~~i~~~~t 196 (286)
++..++.+ ++++||+|+++++.|.++.. .+...|..++.++++.+ .+++.+|+++|++++++ ++
T Consensus 175 ~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~--------~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~ 245 (533)
T 3f6t_A 175 AAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLR--------IPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP-SI 245 (533)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHT--------SGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT-TE
T ss_pred HHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHH--------HHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC-CC
Confidence 77778887 78999999999966655433 44566766777765431 24688999999999987 89
Q ss_pred cEEEEc-CCC-CCCccCHH---HHHHHHH-hcCCEEEEeccccccccccCCCCC-C-CCcceEEEeCCCCCCC--CCCce
Q 023191 197 KLIVAG-ASA-YARLYDYE---RIRKVCN-KQKAIMLADMAHISGLVAAGVIPS-P-FEYADVVTTTTHKSLR--GPRGA 266 (286)
Q Consensus 197 k~v~i~-~~n-~g~~~~l~---~I~~ia~-~~~~~vivD~a~~~g~~~~~~~~~-~-~~~~D~v~~s~~K~l~--gp~gG 266 (286)
++|+++ |+| +|...+.+ +|+++|+ +||+++|+|++|+. ... +.... . ..+.++++.|++|.++ |.+.|
T Consensus 246 k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~-~~~-~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG 323 (533)
T 3f6t_A 246 KALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGA-FVP-NFKSIYSVVPYNTMLVYSYSKLFGCTGWRLG 323 (533)
T ss_dssp EEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGG-GST-TCCCHHHHSGGGEEEEEESHHHHTCGGGCEE
T ss_pred eEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccc-ccc-CccCHhhcCCCCEEEEecCcccCCCcccceE
Confidence 999986 777 77766655 8888888 68999999999763 222 11110 0 0135699999999875 44459
Q ss_pred EEEEecc
Q 023191 267 MIFFRKG 273 (286)
Q Consensus 267 ~l~~~~~ 273 (286)
+++++++
T Consensus 324 ~l~~~~~ 330 (533)
T 3f6t_A 324 VIALNEK 330 (533)
T ss_dssp EEEEESS
T ss_pred EEEECcH
Confidence 9999887
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=156.69 Aligned_cols=204 Identities=12% Similarity=0.121 Sum_probs=128.8
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC-CCCCCcceeEEeCCChH
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g-~~~~~~~~~v~~~sG~~ 123 (286)
+.++|..+++ ++++.+++++.+.+..... ......|+...+..++++++.+++. +| ++++ +|++++|++
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~y~~~~g~~~lr~~la~~l~--~g~~~~~----~v~~~~G~~ 105 (400)
T 3asa_A 34 TVINLSIGDTTQPLNASVAEAFASSIARLSS--PTTCRGYGPDFGLPALRQKLSEDFY--RGFVDAK----EIFISDGAK 105 (400)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHHHTS--SSCCCCCCCTTCCHHHHHHHHHTTS--TTSSCGG----GEEEESCHH
T ss_pred ceEeccCCCCCCCCCHHHHHHHHHHHhcccc--cccccCCCCCCCCHHHHHHHHHHHH--cCCCCHH----HEEEccChH
Confidence 5689988877 4688999999887653110 0011123333455667754444432 57 5553 599999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceee-eEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF-FETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
++.+ +..++++||+|+++++.|.++. ..+...|.. ++.++++.+ +++..|+++ + + ++++|++
T Consensus 106 ~al~~-~~~~~~~gd~Vl~~~p~y~~~~--------~~~~~~g~~~~~~~~~~~~-~~~~~~l~~----~-~-~~~~v~l 169 (400)
T 3asa_A 106 VDLFR-LLSFFGPNQTVAIQDPSYPAYL--------DIARLTGAKEIIALPCLQE-NAFFPEFPE----D-T-HIDILCL 169 (400)
T ss_dssp HHHHH-HHHHHCSSCEEEEEESCCHHHH--------HHHHHTTCSEEEEEECCGG-GTTCCCCCT----T-C-CCSEEEE
T ss_pred HHHHH-HHHHcCCCCEEEECCCCcHHHH--------HHHHHcCCcceEecccchh-cCcccChhh----c-c-CccEEEE
Confidence 6664 4566789999999996665543 233445655 555554311 234445432 1 3 7999999
Q ss_pred c-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCC--CCCC---cceEEEeCCCCCCC--CCCceEEE
Q 023191 202 G-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPFE---YADVVTTTTHKSLR--GPRGAMIF 269 (286)
Q Consensus 202 ~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~--~~~~---~~D~v~~s~~K~l~--gp~gG~l~ 269 (286)
+ ++| +|...+ +++|+++|+++|+++|+|++|+.......... ..+. ..++++.|++|+|+ |.+.|+++
T Consensus 170 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~ 249 (400)
T 3asa_A 170 CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTV 249 (400)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEE
T ss_pred eCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEe
Confidence 7 666 676665 66789999999999999999873211111000 0111 13588999999884 44459999
Q ss_pred Eecch
Q 023191 270 FRKGV 274 (286)
Q Consensus 270 ~~~~~ 274 (286)
+++++
T Consensus 250 ~~~~~ 254 (400)
T 3asa_A 250 IPQEL 254 (400)
T ss_dssp CCTTC
T ss_pred eChhh
Confidence 98877
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=157.71 Aligned_cols=162 Identities=15% Similarity=0.107 Sum_probs=121.5
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
.+++++++++|.+. .+++++|+.++..++.+++++||+|+++++.|+++...... .+...|.+++.++ .
T Consensus 63 ~l~~~la~~~g~~~-----~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~----~~~~~g~~~~~v~--~ 131 (389)
T 3acz_A 63 QFEEMVCSIEGAAG-----SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTH----WLPRFGIEVDLID--T 131 (389)
T ss_dssp HHHHHHHHHHTCSE-----EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHH----HHHHTTCEEEEEC--T
T ss_pred HHHHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHH----HHHHcCCEEEEEC--C
Confidence 34477888888762 47778777788878888899999999999888765432210 0223455454443 2
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEE
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (286)
.|++++++.+++ ++++|+++ ++| +|...|+++|.++|++||+++|+|++|+.+.....+ .. ++|+++
T Consensus 132 ------~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~-~~---~~di~~ 200 (389)
T 3acz_A 132 ------SDVEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPL-EL---GADIAL 200 (389)
T ss_dssp ------TCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGG-GT---TCSEEE
T ss_pred ------CCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCcc-cc---CCeEEE
Confidence 389999999987 89999997 666 678889999999999999999999998766431111 11 489999
Q ss_pred eCCCCCCCCCC---ceEEEEec-chhhhhc
Q 023191 254 TTTHKSLRGPR---GAMIFFRK-GVKEINK 279 (286)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~-~~~~~~~ 279 (286)
.|+||+++||. +|++++++ ++.+.++
T Consensus 201 ~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~ 230 (389)
T 3acz_A 201 HSVSKYINGHGDVIGGVSSAKTAEDIATIK 230 (389)
T ss_dssp EETTTTTTCSSCCCCEEEEESSHHHHHHHH
T ss_pred ECChhhccCCCCceeEEEEECcHHHHHHHH
Confidence 99999998875 49999998 7665443
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=158.05 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=113.3
Q ss_pred HHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 95 SLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 95 ~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
+++++++++++|.+. +++++|++ ++..++.+++++||+|+++++.|.++..+... .+...|.+++.++
T Consensus 59 ~~l~~~la~~~g~~~------~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~----~~~~~g~~~~~~~- 127 (412)
T 2cb1_A 59 KALEERLKALEGALE------AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQ----VLSLMGVTVRYVD- 127 (412)
T ss_dssp HHHHHHHHHHHTCSE------EEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHH----TTTTTTCEEEEEC-
T ss_pred HHHHHHHHHHhCCCc------EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHH----HHHHcCCEEEEEC-
Confidence 345577888888752 66667767 88889999999999999999888765443211 1223454444342
Q ss_pred ccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cce
Q 023191 174 RLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YAD 250 (286)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D 250 (286)
+|++++++++++ +|++|+++ ++| +|...|+++|.++|++||+++|+|++|+.+.... .++. ++|
T Consensus 128 --------~~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~----~~~~~~~d 194 (412)
T 2cb1_A 128 --------PEPEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALC----RPLAWGAH 194 (412)
T ss_dssp --------SSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSC----CGGGGTCS
T ss_pred --------CCHHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccC----CccccCCe
Confidence 248999999987 89999997 666 7788899999999999999999999998762211 1112 489
Q ss_pred EEEeCCCCCCCCCCc--eEEEEec
Q 023191 251 VVTTTTHKSLRGPRG--AMIFFRK 272 (286)
Q Consensus 251 ~v~~s~~K~l~gp~g--G~l~~~~ 272 (286)
++++|+||+++||.+ |++++.+
T Consensus 195 i~~~S~~K~~~~~~~~~G~~~~~~ 218 (412)
T 2cb1_A 195 VVVESLTKWASGHGSVLGGAVLSR 218 (412)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEEC
T ss_pred EEEECCcccccCCCCcEEEEEEec
Confidence 999999999988754 5555544
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=155.96 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 94 ESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 94 ~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
.+.+++.+++++|.+. .+++++|+.++.+++.+++++||+|+++++.|+++...... .....|..+..++
T Consensus 68 ~~~l~~~la~~~g~~~-----~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~----~~~~~g~~~~~v~- 137 (392)
T 3qhx_A 68 RTALEAALAAVEDAAF-----GRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDK----VFTGWNVEYTPVA- 137 (392)
T ss_dssp HHHHHHHHHHHTTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHH----TGGGGTCEEEEEC-
T ss_pred HHHHHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHH----HHHhcCcEEEEeC-
Confidence 3345588888998763 35556665588878898999999999999888765432211 1123454444443
Q ss_pred ccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cce
Q 023191 174 RLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YAD 250 (286)
Q Consensus 174 ~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D 250 (286)
.+ |++++++++++ +|++|+++ ++| +|.+.|+++|+++|++||+++|+|++|+.+... .++. ++|
T Consensus 138 -~~------d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~-----~~~~~~~d 204 (392)
T 3qhx_A 138 -LA------DLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ-----QPLSLGAD 204 (392)
T ss_dssp -TT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-----CGGGGTCS
T ss_pred -CC------CHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccC-----ChHHhCCc
Confidence 32 89999999987 89999997 666 778899999999999999999999998755321 1222 489
Q ss_pred EEEeCCCCCCCCCC---ceEEEEec-chhhhhc
Q 023191 251 VVTTTTHKSLRGPR---GAMIFFRK-GVKEINK 279 (286)
Q Consensus 251 ~v~~s~~K~l~gp~---gG~l~~~~-~~~~~~~ 279 (286)
+++.|+||+++++. +|++++++ ++.+..+
T Consensus 205 i~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~ 237 (392)
T 3qhx_A 205 VVLHSTTKYIGGHSDVVGGALVTNDEELDQSFA 237 (392)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH
T ss_pred EEEEcCccccCCCCCceEEEEEECcHHHHHHHH
Confidence 99999999998764 79999985 5554443
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-18 Score=156.06 Aligned_cols=188 Identities=13% Similarity=0.078 Sum_probs=124.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPH 136 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~G 136 (286)
+++.+.+++... .. .|....+..+++ +.++++++.+. +++++|++ ++.+++.++++||
T Consensus 56 ~~~~~~~a~~~~-~~----------~y~~~~~~~~l~----~~la~~~~~~~------~~~~~~gt~a~~~al~~l~~~g 114 (456)
T 2ez2_A 56 MSDKQWAGMMMG-DE----------AYAGSENFYHLE----RTVQELFGFKH------IVPTHQGRGAENLLSQLAIKPG 114 (456)
T ss_dssp CCHHHHHHHTTC-CC----------CSSSCHHHHHHH----HHHHHHHCCSE------EEEESSHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHhhcc-hh----------hcccChhHHHHH----HHHHHHhCCCc------EEEeCCcHHHHHHHHHHhCCCC
Confidence 467888887621 11 133345566666 66667777642 66666666 8888889999999
Q ss_pred CeEEeccCCC-CcccCccccccccccccceeeeEEEecccC--CC-----CCCCCHHHHHHHhhhcCC----cEEEEc-C
Q 023191 137 DRIMALDLPH-GGHLSHGYQTDTKKISAVSIFFETMPYRLN--ES-----TGYIDYDQLEKSATLFRP----KLIVAG-A 203 (286)
Q Consensus 137 d~Vl~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~-----~~~~d~e~l~~~i~~~~t----k~v~i~-~ 203 (286)
| +++.+.| +++. ..+...|.+++.++++.+ ++ ++.+|+++|++++++ ++ ++|+++ +
T Consensus 115 d--i~~~~~~~~~~~--------~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-~t~~~~~~v~l~~p 183 (456)
T 2ez2_A 115 Q--YVAGNMYFTTTR--------YHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDE-KGAENIAYICLAVT 183 (456)
T ss_dssp C--EEEESSCCHHHH--------HHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHH-HCGGGEEEEEEESS
T ss_pred C--EeccccccchhH--------HHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHh-ccccceeEEEEecc
Confidence 9 6677555 3322 234456665655553311 11 368899999999987 55 888887 6
Q ss_pred CC--CCCccC---HHHHHHHHHhcCCEEEEecccccc---------ccccCCCCC-----CCCcceEEEeCCCCCCCCCC
Q 023191 204 SA--YARLYD---YERIRKVCNKQKAIMLADMAHISG---------LVAAGVIPS-----PFEYADVVTTTTHKSLRGPR 264 (286)
Q Consensus 204 ~n--~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g---------~~~~~~~~~-----~~~~~D~v~~s~~K~l~gp~ 264 (286)
+| +|...+ +++|+++|++||+++|+|++|+.| ....+.... .....|++++|+||+++.|+
T Consensus 184 ~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~ 263 (456)
T 2ez2_A 184 VNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNI 263 (456)
T ss_dssp BTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCc
Confidence 65 455555 999999999999999999999876 222222100 00236888888999876566
Q ss_pred ceEEEEe-cchhhh
Q 023191 265 GAMIFFR-KGVKEI 277 (286)
Q Consensus 265 gG~l~~~-~~~~~~ 277 (286)
||+++++ +++.+.
T Consensus 264 gG~~~~~~~~~~~~ 277 (456)
T 2ez2_A 264 GGFLCMNDDEMFSS 277 (456)
T ss_dssp CEEEEESCHHHHHH
T ss_pred eeEEEECCHHHHHH
Confidence 7999984 555543
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-19 Score=163.82 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=116.6
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
++++++++ +|.+. ++++++|++ ++.+++++++++||+|+++++.|.++.. .+...|..++.++..
T Consensus 61 ~~~~~la~-~g~~~-----~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~--------~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 61 KSMKQVEK-HSDYD-----GYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLH--------ALDISQQEGHFIETH 126 (446)
T ss_dssp HHHHHHCS-CTTEE-----EEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHH--------HHHHHTCCEEECEEE
T ss_pred HHHHHHHh-cCCCc-----eEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHH--------HHHHcCCeEEEEeCe
Confidence 35588888 88862 599999998 8888999999999999999977776654 333566666555542
Q ss_pred cCCCC----CCCCHHHHHHHhhhcCCcEEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC-C-
Q 023191 175 LNEST----GYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF-E- 247 (286)
Q Consensus 175 ~~~~~----~~~d~e~l~~~i~~~~tk~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~-~- 247 (286)
.+ ++ +.+|++++ +.+ ++++|+++++| +|...|+++|+++|++||+++|+|++|+......+. +... .
T Consensus 127 ~~-~~~~~~~~~d~~~l---~~~-~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~ 200 (446)
T 2x3l_A 127 QS-PLTNHYNKVNLSRL---NND-GHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY 200 (446)
T ss_dssp EC-TTTSSEEEEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG
T ss_pred ec-cccCcCCCCCHHHH---cCC-CceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc
Confidence 24 22 46788877 444 79999997444 788999999999999999999999998762211111 1111 1
Q ss_pred cceEEEeCCCCCCCCCCc-eEEEEecchhh
Q 023191 248 YADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (286)
Q Consensus 248 ~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (286)
++|++++|+||+++|+.| |++++++++.+
T Consensus 201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~ 230 (446)
T 2x3l_A 201 QADYVVQSFHKTLPALTMGSVLYIHKNAPY 230 (446)
T ss_dssp TCSEEEECHHHHSSSCTTCEEEEEETTCTT
T ss_pred CCCEEEECCccccccccccEEEEEcCCcCC
Confidence 489999999999988877 99999988654
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=166.91 Aligned_cols=163 Identities=18% Similarity=0.089 Sum_probs=122.4
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
..++.+++++|.+. .+++++|++ ++.+++.++++|||+|+++.+.|.++... +...|..++.++..
T Consensus 209 ~~ee~la~l~G~d~-----~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~--------~~~~G~~~v~v~~~ 275 (755)
T 2vyc_A 209 ESEKYAARVFGADR-----SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQG--------LMLTGAKPVYMVPS 275 (755)
T ss_dssp HHHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH--------HHHHCCEEEEECCC
T ss_pred HHHHHHHHHhCCCc-----eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHH--------HHHcCCEEEEEeCC
Confidence 35588889999864 488999988 88889999999999999999888776542 34567666666533
Q ss_pred cCCCCC----CC-----CHHHHHHHhhhc-CCc--------EEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEecccccc
Q 023191 175 LNESTG----YI-----DYDQLEKSATLF-RPK--------LIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISG 235 (286)
Q Consensus 175 ~~~~~~----~~-----d~e~l~~~i~~~-~tk--------~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g 235 (286)
. +++ .+ |+++|+++++++ ++| +++++.+| +|.+.|+++|+++|++|++++++|+||+.+
T Consensus 276 ~--~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 276 R--NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp B--CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred C--CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence 2 222 35 999999999762 344 88887446 788899999999999999999999999754
Q ss_pred ccccCC--CCCCCCc--ceE------EEeCCCCCCCCCCc-eEEEEecc
Q 023191 236 LVAAGV--IPSPFEY--ADV------VTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 236 ~~~~~~--~~~~~~~--~D~------v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
...... ...++.+ +|+ +++|+||+++||++ |+++++++
T Consensus 354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~ 402 (755)
T 2vyc_A 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG 402 (755)
T ss_dssp GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECC
T ss_pred cccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCc
Confidence 332211 1112233 565 99999999999985 88988876
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=168.38 Aligned_cols=166 Identities=17% Similarity=0.092 Sum_probs=122.9
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
++++.+++++|.+. .+++++|++ ++.++++++++|||+|+++.+.|.++... .+.+.|..++.++..
T Consensus 177 e~e~~lA~~~gae~-----~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~-------~~~l~Ga~~v~v~~~ 244 (730)
T 1c4k_A 177 AAEKHAARVYNADK-----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS-------ALAMAGGRPVYLQTN 244 (730)
T ss_dssp HHHHHHHHHTTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH-------HTTTTCCEEEEECEE
T ss_pred HHHHHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH-------HHHHCCCEEEEEeCC
Confidence 45588999999875 488999997 88889999999999999999888776542 034567666655533
Q ss_pred cCCC--CCCCCHHHH-----HHHhhhcC------C----cEEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccc
Q 023191 175 LNES--TGYIDYDQL-----EKSATLFR------P----KLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGL 236 (286)
Q Consensus 175 ~~~~--~~~~d~e~l-----~~~i~~~~------t----k~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~ 236 (286)
.+.- .+.+|+++| ++++++ + + |+|+++.+| +|.+.|+++|+++|++|++++++|+||+.+.
T Consensus 245 ~~~~~i~g~id~e~L~~~~le~~i~~-~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~ 323 (730)
T 1c4k_A 245 RNPYGFIGGIYDSDFDEKKIRELAAK-VDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE 323 (730)
T ss_dssp ECTTCCEEEECGGGSCHHHHHHHTTT-SSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred ccccCccCCCCHHHHhhhHHHHHhhc-CCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence 2200 123677777 888876 3 5 889887445 7888999999999999999999999997543
Q ss_pred cccC----CCCCCC--Ccce----EEEeCCCCCCCCCCc-eEEEEecch
Q 023191 237 VAAG----VIPSPF--EYAD----VVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 237 ~~~~----~~~~~~--~~~D----~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
.... ...... .++| ++++|+||+++|+.+ |+++++++.
T Consensus 324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~ 372 (730)
T 1c4k_A 324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSH 372 (730)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGG
T ss_pred ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchh
Confidence 2211 111111 1467 999999999999876 888888764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-19 Score=161.81 Aligned_cols=200 Identities=10% Similarity=-0.002 Sum_probs=137.8
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChH-HHHHHHH
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSP-SNFQVYT 130 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~-a~~~~l~ 130 (286)
+...+.|++|+++|.+.+.+.+..+.+............++-+.+|+.+++++|++.+. +|++ ++|+| ++.+++.
T Consensus 19 at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~---evif~t~~~T~a~n~a~~ 95 (377)
T 3e77_A 19 YFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNY---KVIFLQGGGCGQFSAVPL 95 (377)
T ss_dssp ECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTE---EEEEESSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCC---eEEEEcCchHHHHHHHHH
Confidence 34557899999999998876432221110001112345567778899999999996432 5888 56777 7777888
Q ss_pred HhcCC--CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-C
Q 023191 131 ALLKP--HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-Y 206 (286)
Q Consensus 131 a~~~~--Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~ 206 (286)
.++.+ ||+|++....+-++ ++.. .++..|..+..++ .+ .++..++++++..+++ +|++|.++ ..| +
T Consensus 96 ~l~~~~~Gd~v~~~~~g~~~~--~~~~----~a~~~G~~~~~~~--~~-~~~~~~~~~~~~~i~~-~t~lV~~~h~et~t 165 (377)
T 3e77_A 96 NLIGLKAGRCADYVVTGAWSA--KAAE----EAKKFGTINIVHP--KL-GSYTKIPDPSTWNLNP-DASYVYYCANETVH 165 (377)
T ss_dssp HHGGGSTTCEEEECCCSHHHH--HHHH----HHTTTSEEEECSC--CC-SSSCSCCCGGGCCCCT-TCSCEEEESEETTT
T ss_pred hccCCCCCCeEEEEECCHHHH--HHHH----HHHHhCCceEEec--cC-CCcCCCCChHHhccCC-CccEEEEeCccCch
Confidence 88765 99998776544443 2211 2233454333333 33 3445666777766776 89998886 333 6
Q ss_pred CCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhh
Q 023191 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (286)
Q Consensus 207 g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (286)
|.+.|+ +|+++|+++++|++|++|..+.++..+. ++++|+|||+ ||.| |++++++++.+
T Consensus 166 G~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~-----~~~~s~~K~~-gp~G~g~l~~~~~~l~ 225 (377)
T 3e77_A 166 GVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG-----VIFAGAQKNV-GSAGVTVVIVRDDLLG 225 (377)
T ss_dssp TEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS-----EEEEEGGGTT-SCTTCEEEEEETTSCS
T ss_pred heEchh-----hhccCCCEEEEEcccccCCCCCchhhcC-----EEEEeccccc-CCCccEEEEEcHHHHh
Confidence 888888 4788999999999999999987776543 6889999999 7999 99999988643
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=157.63 Aligned_cols=226 Identities=14% Similarity=0.048 Sum_probs=142.7
Q ss_pred ccccccChHHHHHHHHHHHHH--HcCceecCCCC-------CCCHHHHHHhcc-ccccCCCCCCCCCcccCCcchHHHHH
Q 023191 25 APLEVVDPEIADIIEHEKARQ--WKGLELIPSEN-------FTSVSVMQAVGS-VMTNKYSEGYPGARYYGGNEYIDMAE 94 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~--~~~i~L~~~e~-------~~~~~v~~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~ 94 (286)
+++...+++.+..+....... .+.++|..+.. ++++.+++++.+ .+......+ |+...+..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~------y~~~~g~~~lr 79 (412)
T 1yaa_A 6 NNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHE------YLGITGLPSLT 79 (412)
T ss_dssp TTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCC------CCCTTCCHHHH
T ss_pred ccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccC------CCCCCCcHHHH
Confidence 344455554444444433221 35688887763 467999999988 775311112 33445677888
Q ss_pred HHHHHHHHHHCCC--CCCCcceeEEe--CCChH-HHHHH--HHHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 95 SLCQKRALEAFRL--DPEKWGVNVQS--LSGSP-SNFQV--YTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 95 ~~~~~~~~~~~g~--~~~~~~~~v~~--~sG~~-a~~~~--l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
+++.+++.+.+|. +++ +|++ |+|++ ++.++ +...++|||+|+++++.|.++. ..+...|.+
T Consensus 80 ~~ia~~~~~~~~~~~~~~----~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~--------~~~~~~g~~ 147 (412)
T 1yaa_A 80 SNAAKIIFGTQSDALQED----RVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHM--------AIFENQGLK 147 (412)
T ss_dssp HHHHHHHHCTTCHHHHTT----CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHH--------HHHHTTTCC
T ss_pred HHHHHHHhcCCCCCCCcc----eEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHH--------HHHHHcCce
Confidence 8888888665553 443 4888 99888 76655 3455689999999996665543 244456666
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhhcC-CcEEEE-c-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccccccc-
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATLFR-PKLIVA-G-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA- 239 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~~~-tk~v~i-~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~- 239 (286)
++.+++. +++++.+|++++++.+++.+ ++++++ + ++| +|...+ +++|+++|++||+++|+|++|.......
T Consensus 148 ~~~v~~~-~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~ 226 (412)
T 1yaa_A 148 TATYPYW-ANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDL 226 (412)
T ss_dssp EEEEECE-ETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCH
T ss_pred EEEEeee-cCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcc
Confidence 6666541 32467899999999997632 244444 6 666 676654 6688999999999999999975321110
Q ss_pred --CCCCC-CC---Cc---ceEEEeCCCCCCCC--CCceEEE
Q 023191 240 --GVIPS-PF---EY---ADVVTTTTHKSLRG--PRGAMIF 269 (286)
Q Consensus 240 --~~~~~-~~---~~---~D~v~~s~~K~l~g--p~gG~l~ 269 (286)
..... .+ .. .++++.|++|+|+. .+.|+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~ 267 (412)
T 1yaa_A 227 DKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFH 267 (412)
T ss_dssp HHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred cchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEE
Confidence 00000 00 11 35779999998853 2239888
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=154.70 Aligned_cols=234 Identities=12% Similarity=0.048 Sum_probs=134.3
Q ss_pred CCchhhccccccccChH-HHHHHHHHHHHH-HcCceecCCCC---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHH
Q 023191 17 VTWPKQLNAPLEVVDPE-IADIIEHEKARQ-WKGLELIPSEN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYID 91 (286)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~i~L~~~e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (286)
+++.-.|..++...+++ ++..+....+.. .+.|+|..+++ ..++.+.+++.++... . ...|+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~-~------~~~y~~~~g~~ 82 (409)
T 4eu1_A 10 GTLEAQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATLG-T------NMDYAPVTGIA 82 (409)
T ss_dssp -----------------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCC-S------CCCCCCTTCCH
T ss_pred cchhhhHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCcc-c------cccCCCCCCcH
Confidence 45555556677777776 566555543322 36799988874 3456677777766322 1 11234445667
Q ss_pred HHHHHHHHHHHHHCCCC-----CCCcceeEE--eCCChH-HHHH---HHHHhcCCCCeEEeccCCCCcccCccccccccc
Q 023191 92 MAESLCQKRALEAFRLD-----PEKWGVNVQ--SLSGSP-SNFQ---VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKK 160 (286)
Q Consensus 92 ~l~~~~~~~~~~~~g~~-----~~~~~~~v~--~~sG~~-a~~~---~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~ 160 (286)
++++++.+++. |.+ ++ +|. .++|++ ++.+ ++.+++++||+|++++|.|.++ ...
T Consensus 83 ~lr~~ia~~~~---~~~~~~~~~~----~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~--------~~~ 147 (409)
T 4eu1_A 83 SFVEEAQKLCF---GPTCAALRDG----RIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNH--------ESI 147 (409)
T ss_dssp HHHHHHHHHHH---CSSCHHHHTT----CEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHH--------HHH
T ss_pred HHHHHHHHHHc---CCCchhhccC----ceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhH--------HHH
Confidence 88877777663 443 33 353 366666 5443 3456679999999999555444 335
Q ss_pred cccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccc
Q 023191 161 ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 233 (286)
Q Consensus 161 ~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~ 233 (286)
+...|.+++.+++. +.+++.+|++++++.+++. ++++++++ |+| +|...+ +++|+++|++||+++|+|++|.
T Consensus 148 ~~~~g~~~~~~~~~-~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~ 226 (409)
T 4eu1_A 148 FAKAGMELTPYSYY-DPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ 226 (409)
T ss_dssp HHHTTCEEEEECCE-ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred HHHcCCeEEEEEee-cCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc
Confidence 55677666666543 2256789999999999741 45566666 666 776666 5569999999999999999966
Q ss_pred cccccc------CCCCC-CCCcceEEEeCCCCCCCCC--CceEE--EE-ecc
Q 023191 234 SGLVAA------GVIPS-PFEYADVVTTTTHKSLRGP--RGAMI--FF-RKG 273 (286)
Q Consensus 234 ~g~~~~------~~~~~-~~~~~D~v~~s~~K~l~gp--~gG~l--~~-~~~ 273 (286)
...... ..... ......+++.|++|+|+.| +.|++ ++ +++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~ 278 (409)
T 4eu1_A 227 GFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAE 278 (409)
T ss_dssp TTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHH
T ss_pred ccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHH
Confidence 432211 00000 0011337799999988533 44886 44 444
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=155.43 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=119.1
Q ss_pred HHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecc
Q 023191 95 SLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR 174 (286)
Q Consensus 95 ~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 174 (286)
+.+++.+++++|.+. .+++++|+.++.+++. ++++||+|+++.+.|++...... ..+...|.+++.++
T Consensus 58 ~~lr~~la~~~g~~~-----~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~----~~~~~~G~~v~~v~-- 125 (393)
T 1n8p_A 58 ENLERAVAALENAQY-----GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFT----KVANAHGVETSFTN-- 125 (393)
T ss_dssp HHHHHHHHHHTTCSE-----EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHH----HTSTTTCSCCEEES--
T ss_pred HHHHHHHHHHhCCCc-----EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHH----HHHHHcCcEEEEeC--
Confidence 345588888898762 5888888668877888 89999999999987775432210 11223455555554
Q ss_pred cCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhc----CCEEEEeccccccccccCCCCCCCCc
Q 023191 175 LNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ----KAIMLADMAHISGLVAAGVIPSPFEY 248 (286)
Q Consensus 175 ~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~----~~~vivD~a~~~g~~~~~~~~~~~~~ 248 (286)
.+ | +++++++++ +|++|+++ ++| +|.+.|+++|.++|+++ |+++|+|++|+.+... +.... +
T Consensus 126 ~~------d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~~---~ 193 (393)
T 1n8p_A 126 DL------L-NDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLNF---G 193 (393)
T ss_dssp SH------H-HHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGGG---T
T ss_pred CC------h-HHHHHhccc-CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHHc---C
Confidence 22 7 899999987 89999997 666 77888999999999999 9999999999877653 22112 4
Q ss_pred ceEEEeCCCCCCCCCC---ceEEEEe-cchhhhhc
Q 023191 249 ADVVTTTTHKSLRGPR---GAMIFFR-KGVKEINK 279 (286)
Q Consensus 249 ~D~v~~s~~K~l~gp~---gG~l~~~-~~~~~~~~ 279 (286)
+|++++|+||+++++. ||+++++ +++.+.++
T Consensus 194 ~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~ 228 (393)
T 1n8p_A 194 ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ 228 (393)
T ss_dssp CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH
T ss_pred CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHH
Confidence 9999999999887654 3999986 45555443
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=155.85 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=114.9
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
.+++.+++++|.+. .+++++|+.++..++.+++++||+|+++.+.|.++..++... ....|.+++.++ +.
T Consensus 62 ~l~~~la~~~g~~~-----~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~----~~~~g~~~~~~~-~~ 131 (421)
T 2ctz_A 62 VLEKRLAALEGGKA-----ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVT----LKRLGIEVRFTS-RE 131 (421)
T ss_dssp HHHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTH----HHHTTCEEEECC-TT
T ss_pred HHHHHHHHHhCCCc-----eEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHH----HHHcCCEEEEEC-CC
Confidence 35577888888763 488888866888788888999999999998888765443210 123454443330 22
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccc-cccccccCCCCCCCC-cceE
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAH-ISGLVAAGVIPSPFE-YADV 251 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~-~~g~~~~~~~~~~~~-~~D~ 251 (286)
+ |++++++++++ +|++|+++ ++| +|.+.|+++|.++|++||+++|+|++| +.|... . ++. ++|+
T Consensus 132 ~------d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~-~----~~~~~~Di 199 (421)
T 2ctz_A 132 E------RPEEFLALTDE-KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL-R----PLAWGAAL 199 (421)
T ss_dssp C------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC-C----GGGGTCSE
T ss_pred C------CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC-C----ccccCCeE
Confidence 2 89999999987 89999997 666 778899999999999999999999999 777421 1 122 4899
Q ss_pred EEeCCCCCCCCCCc--eEEEEe
Q 023191 252 VTTTTHKSLRGPRG--AMIFFR 271 (286)
Q Consensus 252 v~~s~~K~l~gp~g--G~l~~~ 271 (286)
+++|+||+|+||.+ |++++.
T Consensus 200 ~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 200 VTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp EEEETTTTTTCSSCCCCEEEEE
T ss_pred EEECCcccccCCCCcEEEEEEe
Confidence 99999999988653 544443
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-18 Score=152.35 Aligned_cols=233 Identities=9% Similarity=-0.048 Sum_probs=149.5
Q ss_pred ccccccccChHHHHHHHHHHHHH--HcCceecCCCC-------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHH
Q 023191 23 LNAPLEVVDPEIADIIEHEKARQ--WKGLELIPSEN-------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 93 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~L~~~e~-------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 93 (286)
+.+++...+++.+..+....... .+.++|..+.+ ++++.+.+++.+.+.+.. ....|+...+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-----~~~~y~~~~g~~~l 79 (412)
T 1ajs_A 5 VFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSS-----LNHEYLPILGLAEF 79 (412)
T ss_dssp TTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTT-----CCCCCCCTTCCHHH
T ss_pred hhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChh-----hccCCCCCCCCHHH
Confidence 34456666666666665544321 35789988763 356899999987762210 01123344566788
Q ss_pred HHHHHHHHHHHCCC--CCCCcceeEEe--CCChH-HHHHHH--HHhcCCC-----CeEEeccCCCCcccCcccccccccc
Q 023191 94 ESLCQKRALEAFRL--DPEKWGVNVQS--LSGSP-SNFQVY--TALLKPH-----DRIMALDLPHGGHLSHGYQTDTKKI 161 (286)
Q Consensus 94 ~~~~~~~~~~~~g~--~~~~~~~~v~~--~sG~~-a~~~~l--~a~~~~G-----d~Vl~~~~~~~~~~~~~~~~~~~~~ 161 (286)
++++.+++...+|. +++ +|++ |+|++ ++.+++ .+++++| |+|+++.+.|.++. ..+
T Consensus 80 r~~la~~~~~~~~~~~~~~----~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~--------~~~ 147 (412)
T 1ajs_A 80 RTCASRLALGDDSPALQEK----RVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN--------GVF 147 (412)
T ss_dssp HHHHHHHHHCTTCHHHHTT----CEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH--------HHH
T ss_pred HHHHHHHHhcCCCCccCCC----cEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHH--------HHH
Confidence 87777777554443 443 4888 99988 777664 3557899 99999996665543 244
Q ss_pred ccceee-eEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccc
Q 023191 162 SAVSIF-FETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHI 233 (286)
Q Consensus 162 ~~~g~~-~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~ 233 (286)
...|.+ ++.+++..+ +++.+|++++++.+++. ++++++++ ++| +|...+ +++|+++|++||+++|+|++|.
T Consensus 148 ~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~ 226 (412)
T 1ajs_A 148 TTAGFKDIRSYRYWDT-EKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQ 226 (412)
T ss_dssp HHTTCSCEEEEECEET-TTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT
T ss_pred HHcCCceeEEEeeecC-CCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccc
Confidence 556766 666654322 46789999999998753 56677777 666 666544 6689999999999999999965
Q ss_pred cccccc---C---CCCC-CCCcceEEEeCCCCCCCCC--CceEEEE---ecc
Q 023191 234 SGLVAA---G---VIPS-PFEYADVVTTTTHKSLRGP--RGAMIFF---RKG 273 (286)
Q Consensus 234 ~g~~~~---~---~~~~-~~~~~D~v~~s~~K~l~gp--~gG~l~~---~~~ 273 (286)
...... . .... .....++++.|+||.++.+ +.|++++ +++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~ 278 (412)
T 1ajs_A 227 GFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPD 278 (412)
T ss_dssp TTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHH
T ss_pred cccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCCHH
Confidence 221110 0 0000 0001348899999988542 2399998 655
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=153.80 Aligned_cols=206 Identities=13% Similarity=0.092 Sum_probs=132.5
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQ 127 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~ 127 (286)
.-.|..+.++..+++++++.+.+.. ..+...|+......+++ +++++++|.+. .+++++|+.++..
T Consensus 12 ~~~l~~~~~p~~~~~~~~~~~~~~~-----~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~~a~~~ 77 (357)
T 3lws_A 12 TTGQISGHGKRNVGVLKTAFAAVAD-----EMASDQYGTGAIIEPFE----QKFADVLGMDD-----AVFFPSGTMAQQV 77 (357)
T ss_dssp CSEESSBSSCCBHHHHHHHHTTSCT-----TCBCEETTEETTHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHH
T ss_pred hcccccCCCCCCHHHHHHHHHHhhc-----ccCcccccCChHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHH
Confidence 3446667777777776666543211 11122345445566666 67777788753 4777777767777
Q ss_pred HHHHhcCCCC--eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CC
Q 023191 128 VYTALLKPHD--RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (286)
Q Consensus 128 ~l~a~~~~Gd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~ 204 (286)
++.+++.+|| .|++..+.|........ .....|..+ ++++. +++.+|+++++++ . ++++|+++ ++
T Consensus 78 al~~~~~~gd~~~vi~~~~~~~~~~~~~~-----~~~~~g~~~--~~v~~--~~~~~d~~~l~~~--~-~~~~v~~~~p~ 145 (357)
T 3lws_A 78 ALRIWSDETDNRTVAYHPLCHLEIHEQDG-----LKELHPIET--ILVGA--ADRLMTLDEIKAL--P-DIACLLLELPQ 145 (357)
T ss_dssp HHHHHHHHHTCCEEEECTTCHHHHSSTTH-----HHHHSSCEE--EECSC--TTSCCCHHHHHTC--C-SCSEEEEESSB
T ss_pred HHHHHhhcCCCcEEEecccceeeeeccch-----hhhccCcEE--EEecC--CCCCcCHHHHhcC--c-CcceEEEEccc
Confidence 8899999998 56665543333221100 122345444 44332 4568999999987 3 58999998 55
Q ss_pred C-C-CCccC---HHHHHHHHHhcCCEEEEeccccccccc-cCCCCCCC-CcceEEEeCCCCCCCCCCceEEEEecchhhh
Q 023191 205 A-Y-ARLYD---YERIRKVCNKQKAIMLADMAHISGLVA-AGVIPSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 205 n-~-g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~-~~~~~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~ 277 (286)
| + |...+ +++|+++|++||++||+|++|..+... .+.....+ ..+|+++.|+||+|+||.||+++.++++.+.
T Consensus 146 np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~~~~~ 225 (357)
T 3lws_A 146 REIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQT 225 (357)
T ss_dssp GGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECHHHHHH
T ss_pred ccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCHHHHHH
Confidence 5 4 65554 889999999999999999998632211 11110001 2378899999999999999999998877655
Q ss_pred hc
Q 023191 278 NK 279 (286)
Q Consensus 278 ~~ 279 (286)
.+
T Consensus 226 ~~ 227 (357)
T 3lws_A 226 AR 227 (357)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=164.42 Aligned_cols=228 Identities=14% Similarity=0.099 Sum_probs=144.9
Q ss_pred cccccCh--HHHHHHHHHHHHHH---------cCceecCCCCC-CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHH
Q 023191 26 PLEVVDP--EIADIIEHEKARQW---------KGLELIPSENF-TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMA 93 (286)
Q Consensus 26 ~~~~~~~--~~~~~~~~~~~~~~---------~~i~L~~~e~~-~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 93 (286)
.+..+++ +++..+.+...... +.++|..+++. +++.+++++.+.+.. .+|+ ...+..++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~l~~g~~~~~~~~~~~al~~~~~~---~~Y~------~~~g~~~l 143 (546)
T 2zy4_A 73 GVGGLAKIDGIEGRFERYIAENRDQEGVRFLGKSLSYVRDQLGLDPAAFLHEMVDGILG---CNYP------VPPRMLNI 143 (546)
T ss_dssp CEEECCCSTTHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHT---CSCC------SSSSCCHH
T ss_pred hhccCCccccchhHHHHHHHhcCCCCcchhHHhhhecccCCCCCCChHHHHHHHHhhhc---CCCC------CCcCCHHH
Confidence 4445554 66776666544331 25677666663 456677777665532 1233 23334455
Q ss_pred HHH-HHHHHHHHCCC--CC-CCcceeEEeCCChH-HHHHHHHH-----hcCCCCeEEeccCCCCcccCcccccccccccc
Q 023191 94 ESL-CQKRALEAFRL--DP-EKWGVNVQSLSGSP-SNFQVYTA-----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISA 163 (286)
Q Consensus 94 ~~~-~~~~~~~~~g~--~~-~~~~~~v~~~sG~~-a~~~~l~a-----~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~ 163 (286)
+++ ++.++.+.++. +. +. .+|++|+|++ ++..++.+ +++|||.|++++|.|+++ ...+.+
T Consensus 144 r~~ia~~~~~~~~~~~~~~~~~--~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~--------~~~~~~ 213 (546)
T 2zy4_A 144 SEKIVRQYIIREMGADAIPSES--VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPY--------IEIPEL 213 (546)
T ss_dssp HHHHHHHHHHHHTTCTTSCGGG--EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHH--------HHHHHS
T ss_pred HHHHHHHHHHHhccCCCCCCCc--ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccH--------HHHHHH
Confidence 555 44555665543 11 11 3699999999 77767776 579999999999555444 323223
Q ss_pred c--eeeeEEEecccCC-CCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHH--HhcCCEEEEecccc
Q 023191 164 V--SIFFETMPYRLNE-STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVC--NKQKAIMLADMAHI 233 (286)
Q Consensus 164 ~--g~~~~~v~~~~~~-~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia--~~~~~~vivD~a~~ 233 (286)
. |.+++.++ .++ +++.+|+++|++.+++ ++++|+++ |+| +|...+ +++|+++| +++|++||+|++|+
T Consensus 214 ~~~g~~~~~v~--~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~ 290 (546)
T 2zy4_A 214 AQYALEEVAIN--ADPSLNWQYPDSELDKLKDP-AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG 290 (546)
T ss_dssp TTSCCEEEEEE--CBGGGTTBCCHHHHGGGGST-TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG
T ss_pred cCCCcEEEEEe--cCcccCCCCCHHHHHHhhCC-CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcch
Confidence 2 34444444 432 3578999999988765 89999987 666 676655 66788888 78999999999976
Q ss_pred ccccccCCCCCCC---CcceEEEeCCCCCCC--CCCceEEEEecc-hhhhh
Q 023191 234 SGLVAAGVIPSPF---EYADVVTTTTHKSLR--GPRGAMIFFRKG-VKEIN 278 (286)
Q Consensus 234 ~g~~~~~~~~~~~---~~~D~v~~s~~K~l~--gp~gG~l~~~~~-~~~~~ 278 (286)
.... + ....+ .+.++++.|++|+++ |.+.|+++++++ +.+..
T Consensus 291 ~~~~--~-~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 291 TFAD--D-FQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp GGST--T-CCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHH
T ss_pred hhcc--c-CcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHH
Confidence 4321 1 11111 136688999999885 455699999886 65544
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=155.35 Aligned_cols=202 Identities=10% Similarity=0.037 Sum_probs=136.8
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCccc--CCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChH
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYY--GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSP 123 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~ 123 (286)
+.++|+++..++|++|+++|.+.+.+.+. .+...+. .......++-+.+|+.+++++|++.+ .+|++ |+|++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~--~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~---~~v~f~t~~~T 79 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQG--RGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD---YEVLFLQGGAS 79 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGG--SSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT---EEEEEESSHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhccc--CCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC---ceEEEEcCcHH
Confidence 46789999999999999999998875332 2211110 01233456667889999999999643 25887 88888
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCC-CCCCHHHHHHHhhhcCCcEEEE
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST-GYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~-~~~d~e~l~~~i~~~~tk~v~i 201 (286)
++.+++..++ +||++++....+-++ ++. ..++..|..++.++.+. ++ +.++++. + +++ +|++|.+
T Consensus 80 ~a~n~~~~~~~-~~~~~~~i~~~~~~~--~~~----~~a~~~G~~v~~~~~~~--~g~~~~~~~~-~--l~~-~t~lv~~ 146 (361)
T 3m5u_A 80 LQFAMIPMNLA-LNGVCEYANTGVWTK--KAI----KEAQILGVNVKTVASSE--ESNFDHIPRV-E--FSD-NADYAYI 146 (361)
T ss_dssp HHHHHHHHHHC-CSSCEEEEECSHHHH--HHH----HHHHHTTCCEEEEEECT--TTTSCSCCCC-C--CCT-TSSEEEE
T ss_pred HHHHHHHHhcC-CCCeEEEEeCCHHHH--HHH----HHHHHcCCceEEEeccc--CcCCCcCChh-h--cCC-CCCEEEE
Confidence 7777888888 899764333222222 111 11223455666676432 22 1245555 3 776 8999988
Q ss_pred c-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 202 G-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 202 ~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
+ .+| +|...|. +++ +|+++++|++|++|..+.++. . .|++++|+|||+ ||.| |++++++++.+..
T Consensus 147 ~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~--~---~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~ 214 (361)
T 3m5u_A 147 CSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS--N---IALFYGGVQKNA-GISGLSCIFIRKDMLERS 214 (361)
T ss_dssp ESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT--T---EEEEEEETTTTS-SCTTCEEEEEEHHHHHHH
T ss_pred eCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc--c---CCEEEEechhcc-CCCccEEEEEcHHHHhhh
Confidence 6 333 5766552 344 499999999999999887764 2 799999999999 7999 9999998876433
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-18 Score=152.29 Aligned_cols=206 Identities=12% Similarity=0.060 Sum_probs=134.5
Q ss_pred HcCceecCCC---C----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC--CCCCCcceeE
Q 023191 46 WKGLELIPSE---N----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR--LDPEKWGVNV 116 (286)
Q Consensus 46 ~~~i~L~~~e---~----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g--~~~~~~~~~v 116 (286)
.+.++|..++ + ++++.+++++.+.+.+....+ |+...+..++++++.+++.+..+ ++++ +|
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~lr~~la~~~~~~~~~~~~~~----~v 95 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKN------YLGIDGIPEFGRCTQELLFGKGSALINDK----RA 95 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCC------CCCTTCCHHHHHHHHHHHHCTTCHHHHTT----CE
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCcccccC------CCCCCCCHHHHHHHHHHHhcCCCCccccc----cE
Confidence 3578998886 2 356999999987664311112 33445667888777777754333 2343 48
Q ss_pred Ee--CCChH-HHHHHHHHh--cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHh
Q 023191 117 QS--LSGSP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 191 (286)
Q Consensus 117 ~~--~sG~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i 191 (286)
++ |+|++ ++.+++.++ +.+||+|+++++.|.++. ..+...|.+++.+++... +++.+|++++++.+
T Consensus 96 ~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~--------~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~l 166 (396)
T 2q7w_A 96 RTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHK--------SVFNSAGLEVREYAYYDA-ENHTLDFDALINSL 166 (396)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHH--------HHHHHTTCEEEEEECEET-TTTEECHHHHHHHH
T ss_pred EEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHH--------HHHHHcCCceEEEecccC-CCCCcCHHHHHHHH
Confidence 77 88888 777666655 579999999996665543 344556766666654321 45789999999999
Q ss_pred hhc--CCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEecccccccccc-----CCCCCC-CCcceEEEeCCCC
Q 023191 192 TLF--RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAA-----GVIPSP-FEYADVVTTTTHK 258 (286)
Q Consensus 192 ~~~--~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~-----~~~~~~-~~~~D~v~~s~~K 258 (286)
++. ++++++++ ++| +|...+ +++|+++|++||+++|+|++|....... ...... ....++++.|++|
T Consensus 167 ~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 246 (396)
T 2q7w_A 167 NEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSX 246 (396)
T ss_dssp TTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTT
T ss_pred HhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccc
Confidence 753 35677777 666 666554 6689999999999999999976432210 000000 0014578999999
Q ss_pred CCC--CCCceEEEE
Q 023191 259 SLR--GPRGAMIFF 270 (286)
Q Consensus 259 ~l~--gp~gG~l~~ 270 (286)
+++ |.+.|++++
T Consensus 247 ~~~~~G~riG~~~~ 260 (396)
T 2q7w_A 247 NFGLYNERVGACTL 260 (396)
T ss_dssp TTTCGGGCCEEEEE
T ss_pred cccccccccceEEE
Confidence 885 333499987
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=151.96 Aligned_cols=226 Identities=14% Similarity=0.122 Sum_probs=139.7
Q ss_pred hhccccccccCh-HHHHHHHHHHHHHH-cCceecCCCC-------CCCHHHHHHhccccc--cCCCCCCCCCcccCCcch
Q 023191 21 KQLNAPLEVVDP-EIADIIEHEKARQW-KGLELIPSEN-------FTSVSVMQAVGSVMT--NKYSEGYPGARYYGGNEY 89 (286)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~i~L~~~e~-------~~~~~v~~a~~~~l~--~~~~~~~~~~~~~~~~~~ 89 (286)
++++ .+...++ .++.......+... ..|+|..+.. ++.+.+++++.+... .... ..|....+
T Consensus 23 ~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~------~~Y~~~~G 95 (448)
T 3meb_A 23 SVFS-GFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYN------KEYPPVAG 95 (448)
T ss_dssp CTTT-TCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTC------CSCCCTTC
T ss_pred hHHh-cCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCC------CCCCCCcc
Confidence 4443 4444444 45555544332222 3588877654 235667777544431 1111 12344456
Q ss_pred HHHHHHHHHHHHHHHCCCC-----CCCcceeEEe--CCChH-HHHH--HHHHhcCCCCeEEeccCCCCcccCcccccccc
Q 023191 90 IDMAESLCQKRALEAFRLD-----PEKWGVNVQS--LSGSP-SNFQ--VYTALLKPHDRIMALDLPHGGHLSHGYQTDTK 159 (286)
Q Consensus 90 ~~~l~~~~~~~~~~~~g~~-----~~~~~~~v~~--~sG~~-a~~~--~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~ 159 (286)
..++++++.+++ +|.+ ++ +|++ |+|++ ++.+ .+.++++|||+|+++++.|..+. .
T Consensus 96 ~~~lr~~ia~~l---~g~~~~~~~~~----~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~--------~ 160 (448)
T 3meb_A 96 FPLFLEAAQFLM---FGKDSKAAQEG----RIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHY--------G 160 (448)
T ss_dssp CHHHHHHHHHHH---HCTTCHHHHTT----CEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHH--------H
T ss_pred hHHHHHHHHHHh---cCCCccccCcC----cEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHH--------H
Confidence 677886666665 3665 33 4888 99998 7654 45677899999999996665543 2
Q ss_pred ccc----cceeeeEEEecccCCC-CCCCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEE
Q 023191 160 KIS----AVSIFFETMPYRLNES-TGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIML 227 (286)
Q Consensus 160 ~~~----~~g~~~~~v~~~~~~~-~~~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vi 227 (286)
.+. ..|.+++.+++. +.+ ++.+|++++++.+++ .++++++++ ++| +|...+ +++|+++|++||+++|
T Consensus 161 ~~~~~~~~~G~~v~~~~~~-~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li 239 (448)
T 3meb_A 161 IYDKVFNKLKVPYKEYTYL-RKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAF 239 (448)
T ss_dssp HHHHHHCTTTSCCEEECCB-CTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHhhHHhCCCeEEEEecc-ccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEE
Confidence 444 567666666542 434 589999999999985 256777776 666 666555 6669999999999999
Q ss_pred EeccccccccccCC--CCCCC------CcceEEEeCCCCCCC--CCCceEE--EE
Q 023191 228 ADMAHISGLVAAGV--IPSPF------EYADVVTTTTHKSLR--GPRGAMI--FF 270 (286)
Q Consensus 228 vD~a~~~g~~~~~~--~~~~~------~~~D~v~~s~~K~l~--gp~gG~l--~~ 270 (286)
+|++|..... .+. ....+ ....+++.|+||.|+ |.+-|++ ++
T Consensus 240 ~Deay~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~ 293 (448)
T 3meb_A 240 FDSAYQGFAT-GSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVH 293 (448)
T ss_dssp EEESCTTTSS-SCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEEC
T ss_pred EecccccccC-CCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeee
Confidence 9999653221 110 00000 113477999999875 3344887 55
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-18 Score=152.02 Aligned_cols=222 Identities=14% Similarity=0.104 Sum_probs=140.7
Q ss_pred ccccChHHHHHHHHHHHHH--HcCceecCCCC-------CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHH
Q 023191 27 LEVVDPEIADIIEHEKARQ--WKGLELIPSEN-------FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLC 97 (286)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~--~~~i~L~~~e~-------~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (286)
+...++..+..+....... .+.++|..++. ++++.+.+++.+.+......+ |+...+..++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~lr~~l 78 (394)
T 2ay1_A 5 LKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKT------YAGLSGEPEFQKAM 78 (394)
T ss_dssp CCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCC------CCCSSCCHHHHHHH
T ss_pred CccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCC------CCCCCCcHHHHHHH
Confidence 3444444444343333222 35688988762 347999999987664311112 33335567788777
Q ss_pred HHHHHHHCCCCCCCcceeEEe--CCChH-HHHHHHHHhc--CCCCeEEeccCCCCcccCccccccccccccceeeeEEEe
Q 023191 98 QKRALEAFRLDPEKWGVNVQS--LSGSP-SNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (286)
Q Consensus 98 ~~~~~~~~g~~~~~~~~~v~~--~sG~~-a~~~~l~a~~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (286)
.+++... +.+++ +|++ |+|++ ++.+++.++. .+||+|+++.+.|.++ ...+...|.+++.++
T Consensus 79 a~~~~~~-~~~~~----~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~--------~~~~~~~g~~~~~~~ 145 (394)
T 2ay1_A 79 GELILGD-GLKSE----TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNH--------VSIMNFMGLPVQTYR 145 (394)
T ss_dssp HHHHHGG-GCCGG----GEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHH--------HHHHHHHTCCEEEEE
T ss_pred HHHHhCC-CCCcc----cEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhH--------HHHHHHcCCceEEEe
Confidence 7766322 22443 4887 88888 7776776664 4999999999655554 334445666666666
Q ss_pred cccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccc-------
Q 023191 173 YRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVA------- 238 (286)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~------- 238 (286)
+... +++.+|++++++.+++. ++++++++ ++| +|...+ +++|+++|++||+++|+|++|+.....
T Consensus 146 ~~~~-~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 224 (394)
T 2ay1_A 146 YFDA-ETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAG 224 (394)
T ss_dssp CEET-TTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHH
T ss_pred cccc-cCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHH
Confidence 4322 45789999999999763 35666666 666 666554 668899999999999999998743221
Q ss_pred cC-CCCCCCCcceEEEeCCCCCCC--CCCceEEEE
Q 023191 239 AG-VIPSPFEYADVVTTTTHKSLR--GPRGAMIFF 270 (286)
Q Consensus 239 ~~-~~~~~~~~~D~v~~s~~K~l~--gp~gG~l~~ 270 (286)
.. +.... ...+++.|++|+++ |.+.|++++
T Consensus 225 ~~~~~~~~--~~~i~~~s~sK~~~~~G~riG~~~~ 257 (394)
T 2ay1_A 225 TRLIASRI--PEVLIAASCSKNFGIYRERTGCLLA 257 (394)
T ss_dssp HHHHHHHC--SSEEEEEECTTTTTCGGGCEEEEEE
T ss_pred HHHHhhcC--CCEEEEEeccCCCcCcCCccceEEE
Confidence 00 10001 13477899999885 333499988
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=148.39 Aligned_cols=198 Identities=11% Similarity=0.046 Sum_probs=135.3
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.++|..++++ +++.+++++.+.+.... +|+. ..+ .+ +++++++++|++++ +|++|+|++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~--~y~~------~~~-~~----lr~~la~~~~~~~~----~i~~t~g~~ 77 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCIR--HYPE------PDA-GT----LRQMLAKRNSVDNN----AILVTNGPT 77 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGGGG--SCCC------TTC-HH----HHHHHHHHTTCCGG----GEEEESHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhHHh--cCCC------CcH-HH----HHHHHHHHhCcCHH----HEEEcCCHH
Confidence 467999988874 58999999988774321 2332 222 34 45888888898775 499999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.+++.++. ||+|+++.+.|.++ ...+...|.+++.+++. + +...+++ + ++++|+++
T Consensus 78 ~al~~~~~~l~--gd~Vi~~~p~~~~~--------~~~~~~~g~~~~~v~~~-~-~~~~~~~--------~-~~~~v~i~ 136 (350)
T 3fkd_A 78 AAFYQIAQAFR--GSRSLIAIPSFAEY--------EDACRMYEHEVCFYPSN-E-DIGEADF--------S-NMDFCWLC 136 (350)
T ss_dssp HHHHHHHHHTT--TCEEEEEESCCHHH--------HHHHHHTTCEEEEEETT-S-CGGGSCC--------T-TCSEEEEE
T ss_pred HHHHHHHHHHC--CCEEEEeCCCcHHH--------HHHHHHcCCeEEEEecC-C-ccccCcc--------C-CCCEEEEe
Confidence 8777778777 99999999555444 33455667666666531 3 2223333 3 79999987
Q ss_pred -CCC-CCCccCHHHHHHHHHhcC-CEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCCC--CCCceEEEEecchh
Q 023191 203 -ASA-YARLYDYERIRKVCNKQK-AIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLR--GPRGAMIFFRKGVK 275 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~~~-~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l~--gp~gG~l~~~~~~~ 275 (286)
++| +|...+.++|.++++.++ .++|+|++|+............+. ..++++.|++|+++ |.+.|++++++++.
T Consensus 137 ~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~ 216 (350)
T 3fkd_A 137 NPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFM 216 (350)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHH
Confidence 666 788999999999998876 799999998643221111111111 35688999999885 44559999988877
Q ss_pred hhhccC
Q 023191 276 EINKQG 281 (286)
Q Consensus 276 ~~~~~~ 281 (286)
+..++.
T Consensus 217 ~~~~~~ 222 (350)
T 3fkd_A 217 KRVAAF 222 (350)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 766644
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-18 Score=154.93 Aligned_cols=171 Identities=15% Similarity=0.066 Sum_probs=123.7
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccc
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 164 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
.++..++.+++++++++++|++++ ++.+++|++ ++.+++.++ +++||+|+++++.|+++..++.. .+...
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~----~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~----~a~~~ 174 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIA----NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRA----YLEAV 174 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEE----CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHH----HHHHT
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcc----ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHH----HHHHC
Confidence 356677888899999999999763 588889888 444444443 68999999999888776543321 11235
Q ss_pred eeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEecc-ccccccccCCC
Q 023191 165 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMA-HISGLVAAGVI 242 (286)
Q Consensus 165 g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a-~~~g~~~~~~~ 242 (286)
|.+++.++. +++.+|+++ +++ +|++|+++.+| +|.+.|+++|+++|+++|+++++|.. ++.|..... .
T Consensus 175 G~~v~~v~~----~~~~~d~~~----i~~-~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~ 244 (438)
T 1wyu_A 175 GAKLLTLPL----EGGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-G 244 (438)
T ss_dssp TCEEEEECC----BTTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-H
T ss_pred CCEEEEEcC----cCCccCHHH----hCC-CeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-c
Confidence 666666653 246777766 566 89999997336 88888999999999999999998855 555543211 0
Q ss_pred CCCCCcceEEEeCCCC-----CCCCCCceEEEEecchhhhh
Q 023191 243 PSPFEYADVVTTTTHK-----SLRGPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 243 ~~~~~~~D~v~~s~~K-----~l~gp~gG~l~~~~~~~~~~ 278 (286)
.. ++|++++|+|| |++||+.|++++++++.+..
T Consensus 245 ~~---g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l 282 (438)
T 1wyu_A 245 AY---GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQL 282 (438)
T ss_dssp HH---TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGC
T ss_pred cC---CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhC
Confidence 11 48999999887 78899559999998876544
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-18 Score=148.78 Aligned_cols=195 Identities=12% Similarity=0.029 Sum_probs=133.4
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC---CCCCCcceeEEeCCC
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR---LDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g---~~~~~~~~~v~~~sG 121 (286)
+.++|..++++ +++.+++++.+.+......+|+ . .+..+++ +.++++++ ++++ +|++++|
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~-~~~~~lr----~~la~~~~~~~~~~~----~v~~~~G 84 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYY------D-SPDEELI----EKILSYLDTDFLSKN----NVSVGNG 84 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCC------C-SSCHHHH----HHHHHHHTCSSCCGG----GEEEESS
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCC------C-CchHHHH----HHHHHHcCCCCCCHH----HEEEcCC
Confidence 46899888883 5899999998877321111232 1 1345566 55556666 6654 5999999
Q ss_pred hH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEE
Q 023191 122 SP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 200 (286)
Q Consensus 122 ~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~ 200 (286)
++ ++..++.++ ||+|+++ +.|.++.. .+...|.+++.++ .+ +++.+|++++ + ++++|+
T Consensus 85 ~~~al~~~~~~~---gd~Vl~~-p~y~~~~~--------~~~~~g~~~~~v~--~~-~~~~~d~~~l-----~-~~~~v~ 143 (335)
T 1uu1_A 85 ADEIIYVMMLMF---DRSVFFP-PTYSCYRI--------FAKAVGAKFLEVP--LT-KDLRIPEVNV-----G-EGDVVF 143 (335)
T ss_dssp HHHHHHHHHHHS---SEEEECS-SSCHHHHH--------HHHHHTCEEEECC--CC-TTSCCCCCCC-----C-TTEEEE
T ss_pred hHHHHHHHHHHh---CCcEEEC-CCcHHHHH--------HHHHcCCeEEEec--cC-CCCCCCHHHc-----C-CCCEEE
Confidence 98 777677777 9999998 88876543 2334565554444 44 4567887776 3 799999
Q ss_pred Ec-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC-CCCCcceEEEeCCCCCCC--CCCceEEEEecchh
Q 023191 201 AG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFEYADVVTTTTHKSLR--GPRGAMIFFRKGVK 275 (286)
Q Consensus 201 i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~~~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~ 275 (286)
++ |+| +|...+.+++.++++..| ++|+|++|+..... .... ....+.++++.|++|+++ |.+.|++++++++.
T Consensus 144 l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 221 (335)
T 1uu1_A 144 IPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFI 221 (335)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHH
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHH
Confidence 76 766 778899999999999989 99999998742211 1000 011136789999999885 33459999988876
Q ss_pred hhhc
Q 023191 276 EINK 279 (286)
Q Consensus 276 ~~~~ 279 (286)
+..+
T Consensus 222 ~~l~ 225 (335)
T 1uu1_A 222 DAYN 225 (335)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-18 Score=158.86 Aligned_cols=174 Identities=10% Similarity=0.036 Sum_probs=124.5
Q ss_pred chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC----CCCeEEeccCCCCcccCccccccccccc
Q 023191 88 EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK----PHDRIMALDLPHGGHLSHGYQTDTKKIS 162 (286)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~----~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (286)
.....+++.+..++.+++|++... ..++++|+| +..+++.+.++ +++.|+++...|.+... .+.
T Consensus 94 ~~~~~~e~~~~~~~~~~lGlp~~~---~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~k--------Al~ 162 (450)
T 3bc8_A 94 SLLNKITNSLVLNVIKLAGVHSVA---SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFK--------SMV 162 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCC---EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHH--------HHH
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCc---eEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHH--------HHH
Confidence 345678888889999999997643 456667776 43334444444 38999999988777765 455
Q ss_pred cceeeeEEEecccCCCCCCCCHHHHHHHhhhcC--CcEEEE-cCCCCC--CccCHHHHHHHHHhcCCEEEEecccccccc
Q 023191 163 AVSIFFETMPYRLNESTGYIDYDQLEKSATLFR--PKLIVA-GASAYA--RLYDYERIRKVCNKQKAIMLADMAHISGLV 237 (286)
Q Consensus 163 ~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~--tk~v~i-~~~n~g--~~~~l~~I~~ia~~~~~~vivD~a~~~g~~ 237 (286)
+.|...+.++...+.+.+.+|++.|+++|.++. .+++++ ++++++ ...|+++|+++|++||++++||+||++...
T Consensus 163 l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~ 242 (450)
T 3bc8_A 163 TAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSS 242 (450)
T ss_dssp HTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred HcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhh
Confidence 778776666533333467899999999997743 234444 577776 689999999999999999999999875433
Q ss_pred ccC-CCCCCC--CcceEEEeCCCCCCCCCCc-eEEEEec
Q 023191 238 AAG-VIPSPF--EYADVVTTTTHKSLRGPRG-AMIFFRK 272 (286)
Q Consensus 238 ~~~-~~~~~~--~~~D~v~~s~~K~l~gp~g-G~l~~~~ 272 (286)
... +....+ +++|+++.|+|||++.|.+ +++++++
T Consensus 243 ~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd 281 (450)
T 3bc8_A 243 KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFN 281 (450)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESC
T ss_pred hhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecC
Confidence 211 111112 3599999999999999988 7777765
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-18 Score=155.46 Aligned_cols=193 Identities=12% Similarity=0.148 Sum_probs=122.3
Q ss_pred HHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC----
Q 023191 60 VSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK---- 134 (286)
Q Consensus 60 ~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~---- 134 (286)
+.+++++.+.+.... ..|+...+..+++ ++++++++.+ +|++|+|++ ++.+++.++++
T Consensus 55 ~~v~~a~~~~~~~~~-------~~y~~~~~~~~l~----~~la~~~~~~------~v~~t~ggt~A~~~al~~~~~~~~~ 117 (467)
T 1ax4_A 55 NAMSDHQWAAMITGD-------EAYAGSRNYYDLK----DKAKELFNYD------YIIPAHQGRGAENILFPVLLKYKQK 117 (467)
T ss_dssp CCEEHHHHHHHHTCC-------CCSSSCHHHHHHH----HHHHHHHCCC------EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-------cccccCccHHHHH----HHHHHHcCCC------cEEEcCCcHHHHHHHHHHHHHhhcc
Confidence 555666655543311 1134445556666 6666677753 388888887 88888888888
Q ss_pred CCCe---EEeccCCCCcccCccccccccccccceeeeEEEeccc--CC-----CCCCCCHHHHHHHhhhc---CCcEEEE
Q 023191 135 PHDR---IMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL--NE-----STGYIDYDQLEKSATLF---RPKLIVA 201 (286)
Q Consensus 135 ~Gd~---Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~-----~~~~~d~e~l~~~i~~~---~tk~v~i 201 (286)
+||+ |+++.+.|..+.. .+...|..+..++... +. .++.+|+++|++++++. ++++|++
T Consensus 118 ~Gd~~~~viv~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~ 189 (467)
T 1ax4_A 118 EGKAKNPVFISNFHFDTTAA--------HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVS 189 (467)
T ss_dssp TTCCSSCEEEESSCCHHHHH--------HHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEE
T ss_pred CCCccceEEEeccccchhhH--------HHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEE
Confidence 9999 8887422222211 2223444443333211 11 13578999999999752 6899998
Q ss_pred c-CCC-C-CCc---cCHHHHHHHHHhcCCEEEEeccccc-ccc--------ccCCCCCCC-----CcceEEEeCCCCCCC
Q 023191 202 G-ASA-Y-ARL---YDYERIRKVCNKQKAIMLADMAHIS-GLV--------AAGVIPSPF-----EYADVVTTTTHKSLR 261 (286)
Q Consensus 202 ~-~~n-~-g~~---~~l~~I~~ia~~~~~~vivD~a~~~-g~~--------~~~~~~~~~-----~~~D~v~~s~~K~l~ 261 (286)
+ ++| + |.. .++++|+++|++||+++|+|++|.. +.. ..+.....+ ..+|++++|+||+++
T Consensus 190 ~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g 269 (467)
T 1ax4_A 190 TVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL 269 (467)
T ss_dssp ESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC
T ss_pred eccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCC
Confidence 7 555 5 444 3578999999999999999999876 322 111110001 237889999999997
Q ss_pred CCCceEEEEe-c-chhhh
Q 023191 262 GPRGAMIFFR-K-GVKEI 277 (286)
Q Consensus 262 gp~gG~l~~~-~-~~~~~ 277 (286)
.|.||+++++ + ++.+.
T Consensus 270 ~~~Gg~~~~~d~~~l~~~ 287 (467)
T 1ax4_A 270 LNIGGLVAIRDNEEIFTL 287 (467)
T ss_dssp CSSCEEEEESSCHHHHHH
T ss_pred CCcceEEEeCCHHHHHHH
Confidence 7768888888 5 55443
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=159.29 Aligned_cols=160 Identities=16% Similarity=0.068 Sum_probs=119.3
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
+++.++++||.+. .+++++|++ ++.++++++++|||+|+++++.|.++.. ++.+.|+.++.++...
T Consensus 200 aE~~lA~~fGa~~-----a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~--------~l~lsGa~pv~v~~~~ 266 (715)
T 3n75_A 200 AEQYIARVFNADR-----SYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTH--------LMMMSDVTPIYFRPTR 266 (715)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH--------HHHHSCCEEEEECCCB
T ss_pred HHHHHHHHhCCCC-----ceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHH--------HHHHcCCEEEEEeccc
Confidence 4488999999875 488899987 9888999999999999999988877754 4456777666555332
Q ss_pred CCCCCC----C-----CHHHHHHHhhhc-CCc---EEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCC
Q 023191 176 NESTGY----I-----DYDQLEKSATLF-RPK---LIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGV 241 (286)
Q Consensus 176 ~~~~~~----~-----d~e~l~~~i~~~-~tk---~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~ 241 (286)
+.+. + |+++|+++++++ ++| +++++.+| +|.+.|+++|+++|++++ +++|+||+.+......
T Consensus 267 --~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~ 342 (715)
T 3n75_A 267 --NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI 342 (715)
T ss_dssp --CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGG
T ss_pred --cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEccccccccccCCc
Confidence 2333 3 899999999862 344 77776336 788999999999998763 7999999877532221
Q ss_pred C--CCCCC---cceEE---EeCCCCCCCCCC-ceEEEEecc
Q 023191 242 I--PSPFE---YADVV---TTTTHKSLRGPR-GAMIFFRKG 273 (286)
Q Consensus 242 ~--~~~~~---~~D~v---~~s~~K~l~gp~-gG~l~~~~~ 273 (286)
. ...+. .+|++ ++|+||+++|+. ||++.++++
T Consensus 343 ~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~ 383 (715)
T 3n75_A 343 YEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD 383 (715)
T ss_dssp GTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESC
T ss_pred cccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCch
Confidence 1 12222 25755 999999999984 599999876
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=149.74 Aligned_cols=242 Identities=10% Similarity=0.014 Sum_probs=148.5
Q ss_pred CCchhhccccccccChHHHHHHHHHHHHHHcCceecCC-------CCCCCHHHHHHhccccccCCCCCCCCCcccCCcch
Q 023191 17 VTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPS-------ENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEY 89 (286)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~-------e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~ 89 (286)
-+.+++|++.-...+..++.......+.....|||..| .++..+.|++|....+....+.. |.+..|
T Consensus 15 m~~~~~~~~v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~------Y~p~~G 88 (420)
T 4h51_A 15 MTTAERWQKIQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYE------YLPISG 88 (420)
T ss_dssp CCHHHHHHTCCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCC------CCCTTC
T ss_pred hhhhHHHhCCCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCC------CCCcCC
Confidence 34566675544444445555544433222346999877 22456889888877665533222 566688
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH----HHHHhcCCCCeEEeccCCCCcccCccccccccccccc
Q 023191 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ----VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 164 (286)
Q Consensus 90 ~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~----~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
..++++++.+++.... .+.+. ...+.|.|++ +... +.+++++|||+|++++ |.|+.|...+...
T Consensus 89 ~p~lr~aia~~~~g~~-~~~~~--~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~--------P~w~~y~~i~~~a 157 (420)
T 4h51_A 89 YQPFIDEAVKIIYGNT-VELEN--LVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSD--------PTWPNHYGVVKAA 157 (420)
T ss_dssp CHHHHHHHHHHHHC----CGGG--EEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEE--------SCCTHHHHHHHHT
T ss_pred hHHHHHHHHHHhcCCC-ccccc--cceeeecCchHHHHHHHHHHHHhcCCCCCEEEEec--------CCchhHHHHHHHc
Confidence 8999988887663221 12211 2233355555 4332 3344568999999999 6666665566677
Q ss_pred eeeeEEEecccCCCCCCCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCc---cCHHHHHHHHHhcCCEEEEecccccccc
Q 023191 165 SIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARL---YDYERIRKVCNKQKAIMLADMAHISGLV 237 (286)
Q Consensus 165 g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~---~~l~~I~~ia~~~~~~vivD~a~~~g~~ 237 (286)
|.+.+..+...+++++.+|.+.+.+.+.. .++++++++ ++| +|.. ..+++|+++|+++++++++|+++ .+..
T Consensus 158 G~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y-~~~~ 236 (420)
T 4h51_A 158 GWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAY-QGYA 236 (420)
T ss_dssp TCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC-TTTT
T ss_pred CCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhh-hhhc
Confidence 76533222223435678899999887753 245666666 667 7743 45889999999999999999995 4443
Q ss_pred ccCCCCCCC------C--cceEEEeCCCCCC--CCCCceEEEEecchhh
Q 023191 238 AAGVIPSPF------E--YADVVTTTTHKSL--RGPRGAMIFFRKGVKE 276 (286)
Q Consensus 238 ~~~~~~~~~------~--~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~ 276 (286)
..+.....+ + ..-+++.|++|+| .|+|-|++.+..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~ 285 (420)
T 4h51_A 237 SGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKT 285 (420)
T ss_dssp TSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHH
T ss_pred cCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHH
Confidence 322111000 0 0237789999976 5677799988765443
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=148.45 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=114.5
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
++++.+++++|.+. .+++++|+.++.+ +.+++++||+|+++++.|++........ +....|.+++.++ .
T Consensus 71 ~l~~~la~l~g~~~-----~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~---~~~~~g~~~~~v~--~ 139 (400)
T 3nmy_A 71 AYERCVAALEGGTR-----AFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERV---RRRTAGLDFSFVD--L 139 (400)
T ss_dssp HHHHHHHHHHTCSE-----EEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHT---HHHHHCCEEEEEC--T
T ss_pred HHHHHHHHHhCCCC-----EEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHh---hHhhcCeEEEEEC--C
Confidence 34477888888753 4778888657774 6788999999999997776543322100 0122354444443 2
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEE
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVT 253 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~ 253 (286)
+ |++++++++++ +|++|+++ ++| +|...|+++|+++|++||+++|+|++|+.+.....+ .. ++|+++
T Consensus 140 ~------d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~-~~---g~div~ 208 (400)
T 3nmy_A 140 T------DPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPL-SL---GADLVV 208 (400)
T ss_dssp T------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGG-GG---TCSEEE
T ss_pred C------CHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hc---CCcEEE
Confidence 2 89999999987 89999997 666 678889999999999999999999998765432111 11 499999
Q ss_pred eCCCCCCCCC---Cce-EEEEec-chhhhh
Q 023191 254 TTTHKSLRGP---RGA-MIFFRK-GVKEIN 278 (286)
Q Consensus 254 ~s~~K~l~gp---~gG-~l~~~~-~~~~~~ 278 (286)
.|++|+|+|| .|| ++++++ ++.+..
T Consensus 209 ~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l 238 (400)
T 3nmy_A 209 HSATKYLNGHSDMVGGIAVVGDNAELAEQM 238 (400)
T ss_dssp EETTTTTTCSSSCCCEEEEECSCHHHHHHH
T ss_pred ecCccccCCCCCcceeEEEEeCCHHHHHHH
Confidence 9999999987 457 555544 454443
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=145.89 Aligned_cols=209 Identities=12% Similarity=0.120 Sum_probs=130.6
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
..+++..+.+ .+++.+++++.+.+.... .... .|. .....+ +++.+++++|++ + +|++++|
T Consensus 29 ~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~---~~~~-~y~-~~~~~~----l~~~la~~~g~~-~----~v~~~~g 94 (375)
T 2eh6_A 29 EYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLL---HVSN-LYE-NPWQEE----LAHKLVKHFWTE-G----KVFFANS 94 (375)
T ss_dssp EEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCS---CCCT-TBC-CHHHHH----HHHHHHHTSSSC-E----EEEEESS
T ss_pred EEEEcCCcccccccCCCCHHHHHHHHHHHHhcc---ccCc-ccC-CHHHHH----HHHHHHhhcCCC-C----eEEEeCc
Confidence 3466654432 168999999988875421 1111 132 233333 458888888883 3 5999999
Q ss_pred hH-HHHHHHHH---hc---CCC-CeEEeccCCCCcccCccccccccccccceee-----eEEEecccCCCCCCCCHHHHH
Q 023191 122 SP-SNFQVYTA---LL---KPH-DRIMALDLPHGGHLSHGYQTDTKKISAVSIF-----FETMPYRLNESTGYIDYDQLE 188 (286)
Q Consensus 122 ~~-a~~~~l~a---~~---~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~v~~~~~~~~~~~d~e~l~ 188 (286)
++ ++.+++.+ +. +|| |+|+++++.|.++...............+.. +..++ ..|+++|+
T Consensus 95 ~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~l~ 166 (375)
T 2eh6_A 95 GTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAK--------LNDIDSVY 166 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEEC--------TTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCC--------CchHHHHH
Confidence 88 77766654 45 889 9999999777665322111100000000100 11111 15899999
Q ss_pred HHhhhcCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCCCC-cceEEEeCCCCCC
Q 023191 189 KSATLFRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSPFE-YADVVTTTTHKSL 260 (286)
Q Consensus 189 ~~i~~~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~~~-~~D~v~~s~~K~l 260 (286)
+++++ ++++|+++++| +|...+ +++|.++|++||+++|+|++|+ ++..........+. ..|++++| |+|
T Consensus 167 ~~l~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~ 243 (375)
T 2eh6_A 167 KLLDE-ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGL 243 (375)
T ss_dssp TTCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGG
T ss_pred HHhcC-CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccc
Confidence 99887 89999998444 466767 9999999999999999999987 33222111000111 27888666 988
Q ss_pred CCCCc-eEEEEecchhhhhcc
Q 023191 261 RGPRG-AMIFFRKGVKEINKQ 280 (286)
Q Consensus 261 ~gp~g-G~l~~~~~~~~~~~~ 280 (286)
+++.+ |++++++++.+..++
T Consensus 244 ~~g~~~G~~~~~~~~~~~~~~ 264 (375)
T 2eh6_A 244 GGGVPIGAILAREEVAQSFTP 264 (375)
T ss_dssp GTTSCCEEEEEEHHHHTTCCT
T ss_pred cCCCCeEEEEEcHHHHhhhcC
Confidence 77655 999999887665554
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=149.40 Aligned_cols=209 Identities=12% Similarity=0.074 Sum_probs=132.6
Q ss_pred CceecCCC-----CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 48 GLELIPSE-----NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 48 ~i~L~~~e-----~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
.+++..++ .++++.+++++.+.+.... ... ..| . ....++++++++++++++.+ +|++++|+
T Consensus 47 ~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~---~~~-~~~-~----~~~~~~l~~~la~~~~~~~~----~v~~~~gg 113 (395)
T 1vef_A 47 YIDCVGGYGVANLGHGNPEVVEAVKRQAETLM---AMP-QTL-P----TPMRGEFYRTLTAILPPELN----RVFPVNSG 113 (395)
T ss_dssp EEESSHHHHTCTTCBTCHHHHHHHHHHHHHCC---CCC-TTS-C----CHHHHHHHHHHHHTSCTTEE----EEEEESSH
T ss_pred EEEccCccccccCCCCCHHHHHHHHHHHHhCC---CCc-ccc-C----CHHHHHHHHHHHHhcCCCcC----EEEEcCcH
Confidence 46665443 2478999999998886521 111 112 1 23445566888899987553 58998888
Q ss_pred H-HHHHHHHHhc--CCCCeEEeccCCCCcccCccccccccccccceeeeE---EEecccCC-CCCCCCHHHHHHHhhhcC
Q 023191 123 P-SNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFE---TMPYRLNE-STGYIDYDQLEKSATLFR 195 (286)
Q Consensus 123 ~-a~~~~l~a~~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~-~~~~~d~e~l~~~i~~~~ 195 (286)
+ ++.+++.++. .+||+|+++++.|.+...... ...|.... ..|+..+- .-...|++++++++++ +
T Consensus 114 ~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~-------~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~-~ 185 (395)
T 1vef_A 114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSL-------SVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDE-E 185 (395)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHH-------HTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT-T
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhh-------hhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhcc-C
Confidence 8 8877777663 689999999876654432111 11221100 01100000 0002589999999987 8
Q ss_pred CcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCC-C-CCCC-cceEEEeCCCCCCCCCCc-
Q 023191 196 PKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVI-P-SPFE-YADVVTTTTHKSLRGPRG- 265 (286)
Q Consensus 196 tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-~-~~~~-~~D~v~~s~~K~l~gp~g- 265 (286)
+++|++++.+ +|...+ +++|.++|++||+++|+|++|+ |....+.. . .... ..|++ |+||+|+++.+
T Consensus 186 ~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~ 262 (395)
T 1vef_A 186 TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPL 262 (395)
T ss_dssp EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSC
T ss_pred EEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCchhHhhhcCCCCCEE--EEcccccCCCce
Confidence 9999887433 677777 9999999999999999999987 43211111 0 0011 36776 56999977655
Q ss_pred eEEEEecchhhhhcc
Q 023191 266 AMIFFRKGVKEINKQ 280 (286)
Q Consensus 266 G~l~~~~~~~~~~~~ 280 (286)
|++++++++.+..++
T Consensus 263 G~~~~~~~~~~~l~~ 277 (395)
T 1vef_A 263 GVAVMREEVARSMPK 277 (395)
T ss_dssp EEEEEEHHHHHTSCT
T ss_pred EEEEehHHHHhhhcc
Confidence 999999887666554
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=151.91 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=119.6
Q ss_pred HHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCC---
Q 023191 60 VSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKP--- 135 (286)
Q Consensus 60 ~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~--- 135 (286)
+.+++++.+.+.... ..|+...+..+++ ++++++++.+ .+++++|++ ++.+++.++.++
T Consensus 53 ~~v~~a~~~~l~~~~-------~~y~~~~~~~~l~----~~la~~~~~~------~v~~t~~gt~A~~~al~~~~~~~~~ 115 (467)
T 2oqx_A 53 GAVTQSMQAAMMRGD-------EAYSGSRSYYALA----ESVKNIFGYQ------YTIPTHQGRGAEQIYIPVLIKKREQ 115 (467)
T ss_dssp SCCCHHHHHHTTSCC-------CCSSSCHHHHHHH----HHHHHHHCCS------EEEEEC--CCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCc-------ceeccCchhHHHH----HHHHHHhCcC------cEEEcCCcHHHHHHHHHHHhccccc
Confidence 677777776664311 1244445556666 6667777764 377777777 888788888888
Q ss_pred --C----CeEEeccCCCCcccCccccccccccccceeeeEEE----ecccC---CCCCCCCHHHHHHHhhh---cCCcEE
Q 023191 136 --H----DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETM----PYRLN---ESTGYIDYDQLEKSATL---FRPKLI 199 (286)
Q Consensus 136 --G----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v----~~~~~---~~~~~~d~e~l~~~i~~---~~tk~v 199 (286)
| |+|++. ..|........ ...+...... +++.+ +.++.+|+++|++++++ .+|++|
T Consensus 116 ~~G~~~~d~Ii~~-~~h~~t~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~v 187 (467)
T 2oqx_A 116 EKGLDRSKMVAFS-NYFFDTTQGHS-------QINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI 187 (467)
T ss_dssp HHCCCTTTCEEEE-SSCCHHHHHHH-------HHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCE
T ss_pred cCCCCccceEEec-ccccccchhhh-------hccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEE
Confidence 8 997765 33322100000 0111111111 11111 12457899999999984 279999
Q ss_pred EEc-CCC-C-CCc---cCHHHHHHHHHhcCCEEEEeccccc-ccc--------ccCCCCCCC-----CcceEEEeCCCCC
Q 023191 200 VAG-ASA-Y-ARL---YDYERIRKVCNKQKAIMLADMAHIS-GLV--------AAGVIPSPF-----EYADVVTTTTHKS 259 (286)
Q Consensus 200 ~i~-~~n-~-g~~---~~l~~I~~ia~~~~~~vivD~a~~~-g~~--------~~~~~~~~~-----~~~D~v~~s~~K~ 259 (286)
+++ ++| + |.. .++++|+++|++||+++|+|++|.. +.. ..+.....+ ..+|++++|+||+
T Consensus 188 i~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~ 267 (467)
T 2oqx_A 188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267 (467)
T ss_dssp EEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSST
T ss_pred EEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccc
Confidence 997 555 3 443 3588999999999999999999876 432 112111011 2378889999999
Q ss_pred CCCCCceEEEEecc-hhhh
Q 023191 260 LRGPRGAMIFFRKG-VKEI 277 (286)
Q Consensus 260 l~gp~gG~l~~~~~-~~~~ 277 (286)
++.|.||+++++++ +.+.
T Consensus 268 ~g~~~Gg~~~~~~~~~~~~ 286 (467)
T 2oqx_A 268 AMVPMGGLLCMKDDSFFDV 286 (467)
T ss_dssp TCCSSCEEEEECSGGGHHH
T ss_pred cCCCCceEEEecChhHHHH
Confidence 98887899988877 4443
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-17 Score=146.80 Aligned_cols=196 Identities=9% Similarity=-0.004 Sum_probs=129.1
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChH-H
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSP-S 124 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~-a 124 (286)
..+++.++..++|+.+++++.+...... +. .++ .....++.+++++++++++|++.++ +|++ |+|++ +
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~--~~~---~~~~~~~~~~~~~~la~~~g~~~~~---~i~~~t~g~t~a 109 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTAAALF--GT--SHR---QAPVKNLVGRVRSGLAELFSLPDGY---EVILGNGGATAF 109 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTTTTTT--TS--CTT---SHHHHHHHHHHHHHHHHHTTCCTTC---EEEEEETCHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcCCCcc--Cc--CcC---CHHHHHHHHHHHHHHHHHhCCCCCc---eEEEeCCchhHH
Confidence 4678888888899999999977311100 00 011 1233456677889999999997422 5888 99999 8
Q ss_pred HHHHHHHhcCCC-CeEEeccCCCCcccCccccccccccccc--eeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 125 NFQVYTALLKPH-DRIMALDLPHGGHLSHGYQTDTKKISAV--SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 125 ~~~~l~a~~~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
+.+++.++++|| +.| ....|... ... .+... |..++.++++ ++...+. .+++ +||+|++
T Consensus 110 l~~~~~~l~~~gv~~v--~~~~~~~~------~~~-~~~~~~~g~~~~~v~~~---~g~~~~~-----~i~~-~~~~v~~ 171 (398)
T 2fyf_A 110 WDAAAFGLIDKRSLHL--TYGEFSAK------FAS-AVSKNPFVGEPIIITSD---PGSAPEP-----QTDP-SVDVIAW 171 (398)
T ss_dssp HHHHHHHTCSSCEEEE--ECSHHHHH------HHH-HHHHCTTSCCCEEEECC---TTCCCCC-----CCCT-TCSEEEE
T ss_pred HHHHHHHhcCCCeEEE--eCCHHHHH------HHH-HHHHhCCCCceEEEecC---CCCCCCc-----cccC-CCCEEEE
Confidence 888999999998 443 22222110 000 11122 4455556543 2333332 1455 8999988
Q ss_pred c-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 202 G-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 202 ~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
+ ++| +|...|+++|.++ +|+++|+|++|+.+....++ ..+|++++|+||+++++.| |++++++++.+..
T Consensus 172 ~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~-----~~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l 243 (398)
T 2fyf_A 172 AHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDI-----AETDAYYFAPQKNFASDGGLWLAIMSPAALSRI 243 (398)
T ss_dssp ESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCG-----GGCSEEEECTTSTTCSCSSEEEEEECHHHHHHH
T ss_pred eCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCc-----ccCcEEEEecCcccCCCCceEEEEECHHHHHHh
Confidence 7 555 7788888888776 89999999999877654322 2489999999999987756 9999998776543
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-16 Score=141.24 Aligned_cols=221 Identities=12% Similarity=0.021 Sum_probs=134.5
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
..+++..+.. ..++++++++.+.+.... .++.. .|. .....++++.++++++++.+ +|++++|
T Consensus 44 ~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~--~~~~~-~~~-----~~~~~~l~~~la~~~~~~~~----~v~~~~g 111 (429)
T 1s0a_A 44 RLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMS--HVMFG-GIT-----HAPAIELCRKLVAMTPQPLE----CVFLADS 111 (429)
T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCS--CCCCS-SEE-----CHHHHHHHHHHHHHSCTTCC----EEEEESS
T ss_pred EEEEcCccHhhccCCCCCHHHHHHHHHHHHhcc--ccccc-ccC-----CHHHHHHHHHHHHhCCCCCC----EEEEeCC
Confidence 3466665552 258999999998886522 11110 111 12334466788899987664 5999999
Q ss_pred hH-HHHHHHHHhc---C----CCCeEEeccCCCCcccCccccc------cccccccceeeeEEEecccC--CCCC-CCCH
Q 023191 122 SP-SNFQVYTALL---K----PHDRIMALDLPHGGHLSHGYQT------DTKKISAVSIFFETMPYRLN--ESTG-YIDY 184 (286)
Q Consensus 122 ~~-a~~~~l~a~~---~----~Gd~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~v~~~~~--~~~~-~~d~ 184 (286)
++ ++.++++++. + |||+|+++++.|.++....... ++.........+..++++.. .+.+ .+|+
T Consensus 112 gtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 191 (429)
T 1s0a_A 112 GSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM 191 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHH
Confidence 88 8876776543 2 6999999997776542211100 01010000012334543321 0123 5899
Q ss_pred HHHHHHhhh--cCCcEEEEcCC--C-CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCCCC-cceEEE
Q 023191 185 DQLEKSATL--FRPKLIVAGAS--A-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSPFE-YADVVT 253 (286)
Q Consensus 185 e~l~~~i~~--~~tk~v~i~~~--n-~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~~~-~~D~v~ 253 (286)
++|++++++ .++++|+++|. | +|...+ +++|.++|++||+++|+|++|. +|..........+. ..|+++
T Consensus 192 ~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t 271 (429)
T 1s0a_A 192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILC 271 (429)
T ss_dssp HHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred HHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEE
Confidence 999999874 26677777765 4 565565 9999999999999999999986 33221100000011 367775
Q ss_pred eCCCCCCCCC-Cc-eEEEEecchhhhhccC
Q 023191 254 TTTHKSLRGP-RG-AMIFFRKGVKEINKQG 281 (286)
Q Consensus 254 ~s~~K~l~gp-~g-G~l~~~~~~~~~~~~~ 281 (286)
++|+|+|+ .+ |++++++++.+..+++
T Consensus 272 --~sK~l~~G~~~iG~~~~~~~~~~~l~~~ 299 (429)
T 1s0a_A 272 --LGKALTGGTMTLSATLTTREVAETISNG 299 (429)
T ss_dssp --ECGGGGTSSSCCEEEEECHHHHHHHHTS
T ss_pred --ecccccCCCccceEEEeCHHHHHHhhcC
Confidence 45999875 44 9999998877666553
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-17 Score=149.77 Aligned_cols=166 Identities=13% Similarity=0.062 Sum_probs=119.7
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCC----CCeEEeccCCCCcccCccccccccccccceeeeEE
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKP----HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFET 170 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~----Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 170 (286)
.+.+|++.. |++... ..++++|+| ++++++.+.+++ ||+|+++...|.+.+. ++.+.|..++.
T Consensus 121 l~ld~L~~~-G~~~~~---~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~k--------AliL~Gl~Pv~ 188 (501)
T 3hl2_A 121 LVLDIIKLA-GVHTVA---NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFK--------SMITAGFEPVV 188 (501)
T ss_dssp HHHHHHHHT-TCTTCC---EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHH--------HHHHTTCEEEE
T ss_pred HHHHHHHHc-CCCCCC---cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHH--------HHHHcCCeEEE
Confidence 356777665 997532 577788998 666666666664 4999999988888776 45578887777
Q ss_pred EecccCCCCCCCCHHHHHHHhhhcCC--cEEEE-cCCCCC--CccCHHHHHHHHHhcCCEEEEeccccccccccC-CCCC
Q 023191 171 MPYRLNESTGYIDYDQLEKSATLFRP--KLIVA-GASAYA--RLYDYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS 244 (286)
Q Consensus 171 v~~~~~~~~~~~d~e~l~~~i~~~~t--k~v~i-~~~n~g--~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~ 244 (286)
++...+.+...+|+++++++|+++.+ .++++ ++++++ ...++++|+++|++||++++||+||++...... +...
T Consensus 189 V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~s 268 (501)
T 3hl2_A 189 IENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQ 268 (501)
T ss_dssp ECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHH
T ss_pred EeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHH
Confidence 76544544578999999999987532 23333 355554 568999999999999999999999876543221 1111
Q ss_pred CCC-c-ceEEEeCCCCCCCCCCce-EEEEecc
Q 023191 245 PFE-Y-ADVVTTTTHKSLRGPRGA-MIFFRKG 273 (286)
Q Consensus 245 ~~~-~-~D~v~~s~~K~l~gp~gG-~l~~~~~ 273 (286)
.+. | +|+++.|+||++..|-|| +++++++
T Consensus 269 A~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~ 300 (501)
T 3hl2_A 269 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFND 300 (501)
T ss_dssp HHHHSCCCEEEEEHHHHHCCCSSCEEEEESCH
T ss_pred HHhcCCCcEEEecccccceeecCceEEEeCCH
Confidence 112 4 999999999999999884 5556653
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-16 Score=140.58 Aligned_cols=197 Identities=9% Similarity=0.011 Sum_probs=123.5
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCC-
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKP- 135 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~- 135 (286)
.+|.+.+++.+.+.... +... . ...+... ++++++++++|.+ .+++++|++ ++.+++.++..+
T Consensus 53 ~~p~v~~a~~~~~~~~~---~~~~-~-~~~~~~~----~l~~~la~~~g~~------~v~~~~~gt~a~~~al~~~~~~~ 117 (392)
T 3ruy_A 53 RHPKIINALIDQANRVT---LTSR-A-FHSDQLG----PWYEKVAKLTNKE------MVLPMNTGAEAVETAIKTARRWA 117 (392)
T ss_dssp TCHHHHHHHHHHHTTCS---CCCT-T-SEETTHH----HHHHHHHHHHTCS------EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc---cccc-c-cCCHHHH----HHHHHHHHhcCCC------EEEEeCcHHHHHHHHHHHHHHhh
Confidence 47999999988775521 1111 1 1122333 4557788888832 488888887 887777766543
Q ss_pred ---------CCeEEeccCCCCcccCccccc-----cccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 136 ---------HDRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 136 ---------Gd~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
||+|+++.+.|.+........ +..........+..+ +. .|+++|++++++ ++++|++
T Consensus 118 ~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~d~~~l~~~l~~-~~~~v~~ 188 (392)
T 3ruy_A 118 YDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVI--PY------GDLEALKAAITP-NTAAFIL 188 (392)
T ss_dssp HHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEE--CT------TCHHHHHHHCCT-TEEEEEE
T ss_pred hhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeee--Cc------ccHHHHHHHhcc-CeEEEEE
Confidence 789999998886553211111 000000000001111 11 289999999986 8999999
Q ss_pred c-CCC-CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCCCC-cceEEEeCCCCCCCC--CCceEEEEe
Q 023191 202 G-ASA-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSPFE-YADVVTTTTHKSLRG--PRGAMIFFR 271 (286)
Q Consensus 202 ~-~~n-~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~~~-~~D~v~~s~~K~l~g--p~gG~l~~~ 271 (286)
+ ++| +|...| +++|.++|++||+++|+|++|+ ++............ ..|++++| |+++| .++|+++++
T Consensus 189 ~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~ 266 (392)
T 3ruy_A 189 EPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAAN 266 (392)
T ss_dssp CSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEEC
T ss_pred eCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEEC
Confidence 7 555 677777 9999999999999999999985 22111101000001 26787664 99977 577999999
Q ss_pred cchhhhhcc
Q 023191 272 KGVKEINKQ 280 (286)
Q Consensus 272 ~~~~~~~~~ 280 (286)
+++.+..+.
T Consensus 267 ~~~~~~~~~ 275 (392)
T 3ruy_A 267 RDILGVFEP 275 (392)
T ss_dssp HHHHTTCCT
T ss_pred HHHHhhhcc
Confidence 887766554
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-16 Score=139.94 Aligned_cols=211 Identities=13% Similarity=0.070 Sum_probs=130.2
Q ss_pred cCceecCCC--CC---C-CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC-CCCcceeEEeC
Q 023191 47 KGLELIPSE--NF---T-SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD-PEKWGVNVQSL 119 (286)
Q Consensus 47 ~~i~L~~~e--~~---~-~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~v~~~ 119 (286)
..+++..+. ++ . ++++++++.+.+.... .+... .|. .....++++.+++++|++ ++ +|+++
T Consensus 43 ~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~--~~~~~-~~~-----~~~~~~l~~~la~~~~~~~~~----~v~~~ 110 (419)
T 2eo5_A 43 KYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA--HAAAN-DFY-----NIPQLELAKKLVTYSPGNFQK----KVFFS 110 (419)
T ss_dssp EEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC--CCSCS-CSC-----CHHHHHHHHHHHHHSSCSSCE----EEEEE
T ss_pred EEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc--ccccc-ccC-----CHHHHHHHHHHHHhCCCCcCC----EEEEe
Confidence 356776555 22 2 7999999998886521 11111 111 233445668899999987 43 59999
Q ss_pred CChH-HHHHHHHHhcC-CCCeEEeccCCCCcccCcccc------ccccccccceeeeEEEecccCCCCCC----------
Q 023191 120 SGSP-SNFQVYTALLK-PHDRIMALDLPHGGHLSHGYQ------TDTKKISAVSIFFETMPYRLNESTGY---------- 181 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~-~Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~~~~~~~~---------- 181 (286)
+|++ ++..+++++.. +||+|+++++.|++....... .++.+.......++.+|++ +++.
T Consensus 111 ~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~g~~~~~~ 187 (419)
T 2eo5_A 111 NSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYP---NPYRNPWHINGYEN 187 (419)
T ss_dssp SSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCC---CSSSCTTCCCTTTC
T ss_pred CchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCC---cccccccccccccc
Confidence 9988 88877776543 499999999777654321110 1111111111124445532 2222
Q ss_pred ------CCHHHHH-HHhhh----cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCC
Q 023191 182 ------IDYDQLE-KSATL----FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIP 243 (286)
Q Consensus 182 ------~d~e~l~-~~i~~----~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~ 243 (286)
+|+++|+ +.+++ .++++|+++|.| +|...+ +++|.++|++||+++|+|++|. +|.... ...
T Consensus 188 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~-~~~ 266 (419)
T 2eo5_A 188 PSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFA 266 (419)
T ss_dssp HHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSG
T ss_pred chhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc-hhh
Confidence 4689999 88874 266777777654 465555 9999999999999999999986 332211 000
Q ss_pred CC-CC-cceEEEeCCCCCCCCC-Cc-eEEEEecchh
Q 023191 244 SP-FE-YADVVTTTTHKSLRGP-RG-AMIFFRKGVK 275 (286)
Q Consensus 244 ~~-~~-~~D~v~~s~~K~l~gp-~g-G~l~~~~~~~ 275 (286)
.. +. ..|++ +++|+|+++ -. |++++++++.
T Consensus 267 ~~~~~~~~d~~--t~sK~~~~G~~riG~~~~~~~~~ 300 (419)
T 2eo5_A 267 IENFNTVPDVI--TLAKALGGGIMPIGATIFRKDLD 300 (419)
T ss_dssp GGGGTCCCSEE--EECGGGGTTTSCCEEEEEEGGGC
T ss_pred HHhcCCCCCEE--EecccccCCccceEEEEEchHhh
Confidence 00 01 25666 566998764 33 9999998866
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=135.99 Aligned_cols=208 Identities=13% Similarity=0.006 Sum_probs=126.5
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHH---Hhc
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYT---ALL 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~---a~~ 133 (286)
+++.+++++.+.+.... +... .|.......+++ +.++++++.+.. .+|++++|++ ++.+++. ++.
T Consensus 58 ~~~~v~~a~~~~~~~~~---~~~~-~~~~~~~~~~l~----~~la~~~~~~~~---~~v~~~~g~~~a~~~~~~~a~~~~ 126 (426)
T 1sff_A 58 LHPKVVAAVEAQLKKLS---HTCF-QVLAYEPYLELC----EIMNQKVPGDFA---KKTLLVTTGSEAVENAVKIARAAT 126 (426)
T ss_dssp TCHHHHHHHHHHTTTCS---CCCT-TTEECHHHHHHH----HHHHHHSSCSSC---EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC---Cccc-cccCCHHHHHHH----HHHHHhCCcccc---cEEEEeCchHHHHHHHHHHHHHhh
Confidence 68999999998875421 1111 123334444444 677777732221 2699999999 8877776 677
Q ss_pred CCCCeEEeccCCCCcccCccccc------cccccccceeeeEEEecccC--CCCCCCCHHHHHHHhhh----cCCcEEEE
Q 023191 134 KPHDRIMALDLPHGGHLSHGYQT------DTKKISAVSIFFETMPYRLN--ESTGYIDYDQLEKSATL----FRPKLIVA 201 (286)
Q Consensus 134 ~~Gd~Vl~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~v~~~~~--~~~~~~d~e~l~~~i~~----~~tk~v~i 201 (286)
++| +|+++++.|.+........ ++.........++.++++.+ ..++.+|+++|++++++ .++++|++
T Consensus 127 ~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~ 205 (426)
T 1sff_A 127 KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVI 205 (426)
T ss_dssp TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred CCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEE
Confidence 887 8889887776543211100 00000000001344554321 01235799999999873 37788888
Q ss_pred c--CCCCCCccC----HHHHHHHHHhcCCEEEEeccccccccccCC-CC-CCCC-cceEEEeCCCCCCCC-CCceEEEEe
Q 023191 202 G--ASAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV-IP-SPFE-YADVVTTTTHKSLRG-PRGAMIFFR 271 (286)
Q Consensus 202 ~--~~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~-~~~~-~~D~v~~s~~K~l~g-p~gG~l~~~ 271 (286)
+ ++|+|...+ +++|.++|++||+++|+|++|+ |....+. .. .... ..|++ |++|+|++ .+.|+++++
T Consensus 206 ~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~~~GlriG~~~~~ 282 (426)
T 1sff_A 206 EPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSIAGGFPLAGVTGR 282 (426)
T ss_dssp CSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGGGTSSCCEEEEEE
T ss_pred ecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccccCCCceEEEEEc
Confidence 5 456775666 9999999999999999999987 4322111 10 0011 26665 66799864 223999999
Q ss_pred cchhhhhcc
Q 023191 272 KGVKEINKQ 280 (286)
Q Consensus 272 ~~~~~~~~~ 280 (286)
+++.+..+.
T Consensus 283 ~~~~~~l~~ 291 (426)
T 1sff_A 283 AEVMDAVAP 291 (426)
T ss_dssp HHHHTTSCT
T ss_pred HHHHhhhcc
Confidence 887766654
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=137.69 Aligned_cols=197 Identities=15% Similarity=0.171 Sum_probs=124.4
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~-- 134 (286)
.++.+.+++.+.+..... +. ..+ .. ....++++++++++|.+ +|++++|++ ++.+++.++..
T Consensus 56 ~~p~v~~a~~~~~~~~~~--~~--~~~-~~----~~~~~l~~~la~~~~~~------~v~~~~gg~~a~~~al~~~~~~~ 120 (406)
T 4adb_A 56 AHPELREALNEQASKFWH--TG--NGY-TN----EPVLRLAKKLIDATFAD------RVFFCNSGAEANEAALKLARKFA 120 (406)
T ss_dssp TCHHHHHHHHHHHTTCSC--CC--TTS-CC----HHHHHHHHHHHHHSSCS------EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--cc--CCc-CC----HHHHHHHHHHHhhCCCC------eEEEeCcHHHHHHHHHHHHHHHH
Confidence 489999999888765221 11 111 11 23445668888888765 388888888 88878887764
Q ss_pred -----CC-CeEEeccCCCCcccCccccccccc-----cccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 023191 135 -----PH-DRIMALDLPHGGHLSHGYQTDTKK-----ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA 203 (286)
Q Consensus 135 -----~G-d~Vl~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~ 203 (286)
+| |+|+++++.|.++........... ..-.+..+..++ ..|+++|++++++ ++++|+++|
T Consensus 121 ~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d~~~l~~~l~~-~~~~v~~~p 191 (406)
T 4adb_A 121 HDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAA--------YNDINSASALIDD-STCAVIVEP 191 (406)
T ss_dssp HHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEEC--------TTCHHHHHTTCST-TEEEEEECS
T ss_pred HhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeC--------CCcHHHHHHHhcC-CeEEEEEeC
Confidence 66 999999987776532111110000 000001121121 1489999999986 899999986
Q ss_pred CC-CCCc-----cCHHHHHHHHHhcCCEEEEeccccccccccCCCC--CCCC-cceEEEeCCCCCCCCC-CceEEEEecc
Q 023191 204 SA-YARL-----YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPFE-YADVVTTTTHKSLRGP-RGAMIFFRKG 273 (286)
Q Consensus 204 ~n-~g~~-----~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~--~~~~-~~D~v~~s~~K~l~gp-~gG~l~~~~~ 273 (286)
+| +|.. .++++|.++|++||+++|+|++|+ |....+... ..+. ..|+++ ++|+|++. +.|+++++++
T Consensus 192 ~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~r~G~~~~~~~ 268 (406)
T 4adb_A 192 IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDLLT--TAKALGGGFPVGALLATEE 268 (406)
T ss_dssp EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECHH
T ss_pred CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhHHHHhcCCCCCEEE--echhhcCCCCeEEEEEcHH
Confidence 55 4433 368999999999999999999986 332111100 0001 257774 49998633 4599999988
Q ss_pred hhhhhccC
Q 023191 274 VKEINKQG 281 (286)
Q Consensus 274 ~~~~~~~~ 281 (286)
+.+..++.
T Consensus 269 ~~~~~~~~ 276 (406)
T 4adb_A 269 CARVMTVG 276 (406)
T ss_dssp HHHTCCTT
T ss_pred HHhhhccC
Confidence 87666543
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-15 Score=132.53 Aligned_cols=208 Identities=13% Similarity=0.096 Sum_probs=126.9
Q ss_pred CceecCC--CCC---CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCCh
Q 023191 48 GLELIPS--ENF---TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGS 122 (286)
Q Consensus 48 ~i~L~~~--e~~---~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~ 122 (286)
.+++..+ .++ .+|++++++.+.+.... .++ . .+ .....+++++++++++|.+ .|++++|+
T Consensus 38 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~--~-~~-----~~~~~~~l~~~la~~~~~~------~v~~~~gg 102 (395)
T 3nx3_A 38 YLDFSSGIGVCALGYNHAKFNAKIKAQVDKLL-HTS--N-LY-----YNENIAAAAKNLAKASALE------RVFFTNSG 102 (395)
T ss_dssp EEESSHHHHTCTTCBSCHHHHHHHHHHHTTCS-CCC--T-TS-----BCHHHHHHHHHHHHHHTCS------EEEEESSH
T ss_pred EEECCCcHHhccCCCCCHHHHHHHHHHHHhcc-ccc--c-cc-----CCHHHHHHHHHHHHhcCCC------eEEEeCCH
Confidence 4666544 222 47999999998876521 111 1 11 1244455668888888732 48888888
Q ss_pred H-HHHHHHHHhc-------CCCCeEEeccCCCCcccCcccc-----ccccccccceeeeEEEecccCCCCCCCCHHHHHH
Q 023191 123 P-SNFQVYTALL-------KPHDRIMALDLPHGGHLSHGYQ-----TDTKKISAVSIFFETMPYRLNESTGYIDYDQLEK 189 (286)
Q Consensus 123 ~-a~~~~l~a~~-------~~Gd~Vl~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~ 189 (286)
+ ++..++.++. .+||+|+++++.|.+....... .+.......+..+..++ . .|+++|++
T Consensus 103 ~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~d~~~l~~ 174 (395)
T 3nx3_A 103 TESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAK--Y------NDISSVEK 174 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEEC--T------TCHHHHHT
T ss_pred HHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeC--C------CCHHHHHH
Confidence 8 8887777664 5689999999887665311110 01101111111122222 1 27999999
Q ss_pred HhhhcCCcEEEEcCC-C-CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCCCC-cceEEEeCCCCCCC
Q 023191 190 SATLFRPKLIVAGAS-A-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSPFE-YADVVTTTTHKSLR 261 (286)
Q Consensus 190 ~i~~~~tk~v~i~~~-n-~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~~~-~~D~v~~s~~K~l~ 261 (286)
++++ ++++|++.+. | .|...+ +++|.++|++||+++|+|++|+ +|..........+. ..|++++ +|+|+
T Consensus 175 ~l~~-~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~--sK~~~ 251 (395)
T 3nx3_A 175 LVNE-KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTS--AKALG 251 (395)
T ss_dssp TCCT-TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGT
T ss_pred hccC-CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEe--ccccc
Confidence 9976 7888888633 3 455555 9999999999999999999976 32221100000001 2566654 59886
Q ss_pred CC-CceEEEEecch-hhhhccC
Q 023191 262 GP-RGAMIFFRKGV-KEINKQG 281 (286)
Q Consensus 262 gp-~gG~l~~~~~~-~~~~~~~ 281 (286)
++ +.|++++++++ .+..++.
T Consensus 252 ~G~~~G~~~~~~~~~~~~~~~~ 273 (395)
T 3nx3_A 252 CGLSVGAFVINQKVASNSLEAG 273 (395)
T ss_dssp TTSCCEEEEECHHHHHHHSCTT
T ss_pred CCCceEEEEEchhhhhhhcCCc
Confidence 54 44999999988 7666543
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.8e-16 Score=140.50 Aligned_cols=202 Identities=11% Similarity=-0.032 Sum_probs=124.7
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchH-----HHHHHHHHHHHHHHCCCCCCCcceeEEeC
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYI-----DMAESLCQKRALEAFRLDPEKWGVNVQSL 119 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~g~~~~~~~~~v~~~ 119 (286)
+.|+|..+++. +++.+.+++.+.+... .......|+...+. .++++++.+++. ..|++.+. ..+|++|
T Consensus 23 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~---~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~-~~~i~~t 97 (391)
T 3bwn_A 23 FVVNLDHGDPTAYEEYWRKMGDRCTVTIR---GCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATE-DRYIVVG 97 (391)
T ss_dssp SCEECSSCCCGGGHHHHHHTGGGSCEEEC---TTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCS-SSEEEEE
T ss_pred CeeEcCCCCCCCCCCHHHHHhHHHHhhcC---ccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCC-CCeEEEe
Confidence 56899888874 3445666654333211 01112234555665 889988888876 44653211 0269999
Q ss_pred CChH-HHHHHHHHhcCCCC----eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc
Q 023191 120 SGSP-SNFQVYTALLKPHD----RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF 194 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd----~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~ 194 (286)
+|++ ++.+++.++++||| +|++++|.|.++ ...+...|.+++.+++ +.++.. .+
T Consensus 98 ~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~--------~~~~~~~g~~~~~~~~--d~~~l~----------~~- 156 (391)
T 3bwn_A 98 TGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTY--------VEETTYVRSGMYKWEG--DAWGFD----------KK- 156 (391)
T ss_dssp EHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHH--------HHHHHTTCBTTEEEEE--ESTTCC----------CC-
T ss_pred CChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhH--------HHHHHHcCCeEEEecC--CHHHcC----------CC-
Confidence 9999 88879999999999 999999555544 3344566666655553 322222 13
Q ss_pred CCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCC--CCCceEEEE
Q 023191 195 RPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLR--GPRGAMIFF 270 (286)
Q Consensus 195 ~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~--gp~gG~l~~ 270 (286)
++|+|+++ |+| +|...+ +|++.++.++++||+|++|+.+... .+. . ....++++.|+||+|+ |.+.|++++
T Consensus 157 ~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~-~l~-~-~~~~~i~~~S~SK~~g~~GlRiG~~~~ 231 (391)
T 3bwn_A 157 GPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYT-PIT-R-RQDHDIMLFTFSKITGHAGSRIGWALV 231 (391)
T ss_dssp SCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTS-CCC-C-CBCCSEEEEEHHHHHSCGGGCEEEEEE
T ss_pred CCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCC-ccc-c-CCCCeEEEEechhhcCCCccceEEEEe
Confidence 78999887 776 776654 4444222233999999998742110 111 0 1136799999999874 445599998
Q ss_pred -ecchhhhhc
Q 023191 271 -RKGVKEINK 279 (286)
Q Consensus 271 -~~~~~~~~~ 279 (286)
++++.+.++
T Consensus 232 ~~~~l~~~l~ 241 (391)
T 3bwn_A 232 KDKEVAKKMV 241 (391)
T ss_dssp CCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 667665544
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-15 Score=136.79 Aligned_cols=197 Identities=13% Similarity=0.150 Sum_probs=120.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--- 133 (286)
.+|.+++++.+.+.... +... .| ..+...+ +++++++++|.+ .|++++|++ ++.+++.++.
T Consensus 93 ~~p~v~~Ai~~~~~~~~---~~~~-~~-~~~~~~~----l~~~la~~~g~~------~v~~~~sGseA~~~al~~~~~~~ 157 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLT---LTSR-AF-YNNVLGE----YEEYITKLFNYH------KVLPMNTGVEAGETACKLARKWG 157 (439)
T ss_dssp TCHHHHHHHHHHHTTCS---CCCT-TS-EESSHHH----HHHHHHHHHTCS------EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC---cccC-cc-CCHHHHH----HHHHHHHhcCCC------EEEEeCCHHHHHHHHHHHHHHHh
Confidence 67999999998876521 1111 12 1223344 446677777743 488888777 8887777654
Q ss_pred ------CCC-CeEEeccCCCCcccCccccccc-----cccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 134 ------KPH-DRIMALDLPHGGHLSHGYQTDT-----KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 134 ------~~G-d~Vl~~~~~~~~~~~~~~~~~~-----~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
.+| |+|+++++.|.+.......... .+..-....+..+| . .|++++++.++..++++|++
T Consensus 158 ~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~--~------~d~~~le~~l~~~~~~~vi~ 229 (439)
T 2oat_A 158 YTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIP--Y------NDLPALERALQDPNVAAFMV 229 (439)
T ss_dssp HHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEEC--S------SCHHHHHHHTTSTTEEEEEE
T ss_pred hhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeC--C------CCHHHHHHHhCCCCEEEEEE
Confidence 467 8999999777654321110000 00000001122232 2 28999999995337888888
Q ss_pred cCCC--CCCcc----CHHHHHHHHHhcCCEEEEeccccccccccCC-CC-CCCC-cceEEEeCCCCCCCCC--CceEEEE
Q 023191 202 GASA--YARLY----DYERIRKVCNKQKAIMLADMAHISGLVAAGV-IP-SPFE-YADVVTTTTHKSLRGP--RGAMIFF 270 (286)
Q Consensus 202 ~~~n--~g~~~----~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~-~~~~-~~D~v~~s~~K~l~gp--~gG~l~~ 270 (286)
+|.+ +|... ++++|.++|++||+++|+|++|. |....+. .. ..+. ..|++ +++|+|++. ++|++++
T Consensus 230 ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~G~v~~ 306 (439)
T 2oat_A 230 EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPVSAVLC 306 (439)
T ss_dssp CSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEE
T ss_pred ECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCCcchhHHHhCCCCcEE--EecccccCCCCCeEEEEE
Confidence 7543 46444 69999999999999999999984 4321111 00 0011 26876 667999764 5799999
Q ss_pred ecchhhhhcc
Q 023191 271 RKGVKEINKQ 280 (286)
Q Consensus 271 ~~~~~~~~~~ 280 (286)
++++.+..+.
T Consensus 307 ~~~~~~~l~~ 316 (439)
T 2oat_A 307 DDDIMLTIKP 316 (439)
T ss_dssp CHHHHTTSCT
T ss_pred CHHHHhccCC
Confidence 9887766654
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-15 Score=133.84 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=121.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~-- 134 (286)
.++.+++++.+.+.... .... .| ..++.+++++.+++++|.+ +|++++|++ ++.+++.++..
T Consensus 57 ~~~~v~~a~~~~~~~~~---~~~~-~~-----~~~~~~~l~~~la~~~g~~------~v~~~~gg~~a~~~al~~~~~~~ 121 (397)
T 2ord_A 57 SHPRLVEAIKDQAEKLI---HCSN-LF-----WNRPQMELAELLSKNTFGG------KVFFANTGTEANEAAIKIARKYG 121 (397)
T ss_dssp TCHHHHHHHHHHHHHCS---CCCT-TS-----EEHHHHHHHHHHHHTTTSC------EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc---cCcc-cc-----CCHHHHHHHHHHHHhcCCC------eEEEeCCHHHHHHHHHHHHHHHh
Confidence 58999999998876521 1111 11 1234455668888888842 488888888 88777777753
Q ss_pred ----C-CCeEEeccCCCCcccCccccccccccccceee------------eEEEecccCCCCCCCCHHHHHHHhhhcCCc
Q 023191 135 ----P-HDRIMALDLPHGGHLSHGYQTDTKKISAVSIF------------FETMPYRLNESTGYIDYDQLEKSATLFRPK 197 (286)
Q Consensus 135 ----~-Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk 197 (286)
+ +++|+++++.|.+..... +...|.. +..++ . .|+++|++.+++ +++
T Consensus 122 ~~~~~~~~~vi~~~~~yh~~~~~~-------~~~~g~~~~~~~~~p~~~~~~~~~--~------~d~~~l~~~l~~-~~~ 185 (397)
T 2ord_A 122 KKKSEKKYRILSAHNSFHGRTLGS-------LTATGQPKYQKPFEPLVPGFEYFE--F------NNVEDLRRKMSE-DVC 185 (397)
T ss_dssp HHHCTTCCEEEEEBTCCCCSSHHH-------HHHSBCHHHHGGGCSCCTTEEEEC--T------TCHHHHHHHCCT-TEE
T ss_pred hcCCCCCceEEEEcCCcCCCchhh-------hhccCChhhccccCCCCCCeeEec--C------CCHHHHHHHhhc-CeE
Confidence 5 578998887665432211 1122211 22222 2 289999999987 899
Q ss_pred EEEEc-CCC-CCC----ccCHHHHHHHHHhcCCEEEEeccccccccccCCCC--CCCC-cceEEEeCCCCCCCCC-CceE
Q 023191 198 LIVAG-ASA-YAR----LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPFE-YADVVTTTTHKSLRGP-RGAM 267 (286)
Q Consensus 198 ~v~i~-~~n-~g~----~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~--~~~~-~~D~v~~s~~K~l~gp-~gG~ 267 (286)
+|+++ ++| +|. ..++++|.++|++||+++|+|++|+ |....+... ..+. ..|++ +++|+|+++ +.|+
T Consensus 186 ~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~ 262 (397)
T 2ord_A 186 AVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGA 262 (397)
T ss_dssp EEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEE
T ss_pred EEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCccchhhhhhCCCCCee--eeccccCCCcCeEE
Confidence 99998 444 565 3578999999999999999999986 433222110 0001 26776 447999754 3499
Q ss_pred EEEecchhhhhc
Q 023191 268 IFFRKGVKEINK 279 (286)
Q Consensus 268 l~~~~~~~~~~~ 279 (286)
+++++++. ..+
T Consensus 263 ~~~~~~~~-~l~ 273 (397)
T 2ord_A 263 VIVNERAN-VLE 273 (397)
T ss_dssp EEECSTTC-CCC
T ss_pred EEEchHhc-ccC
Confidence 99998875 444
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=132.82 Aligned_cols=197 Identities=15% Similarity=0.186 Sum_probs=116.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--- 133 (286)
.+|.+++++.+.+.... +... .+ . .+...++++.+++++|.+ +|++++|++ ++.+++.++.
T Consensus 82 ~~p~v~~ai~~~~~~~~---~~~~-~~-~----~~~~~~l~~~la~~~g~~------~v~~~~sGseA~~~al~~a~~~~ 146 (433)
T 1z7d_A 82 CHPNILNAMINQAKNLT---ICSR-AF-F----SVPLGICERYLTNLLGYD------KVLMMNTGAEANETAYKLCRKWG 146 (433)
T ss_dssp TCHHHHHHHHHHHTTCS---CCCT-TS-E----EHHHHHHHHHHHHHHTCS------EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC---CccC-Cc-C----CHHHHHHHHHHHhhcCCC------eEEEeCCHHHHHHHHHHHHHHHh
Confidence 68999999998876521 1111 11 1 233344557777777743 488888877 8887777643
Q ss_pred ------CCC-CeEEeccCCCCcccCccccccccccccce-----eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEE
Q 023191 134 ------KPH-DRIMALDLPHGGHLSHGYQTDTKKISAVS-----IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVA 201 (286)
Q Consensus 134 ------~~G-d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i 201 (286)
.+| |+|+++++.|.+................+ ..+..+| . .|+++|++++...++++|++
T Consensus 147 ~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~--~------~d~~~le~~l~~~~~~~vi~ 218 (433)
T 1z7d_A 147 YEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVP--Y------DDLEALEEELKDPNVCAFIV 218 (433)
T ss_dssp HHTSCCCTTCCEEEEETTC--------------------------CEEEEC--T------TCHHHHHHHHTSTTEEEEEE
T ss_pred hhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeC--C------CCHHHHHHHhCCCCEEEEEE
Confidence 578 99999997776543211110000000000 1122222 1 38999999994237888888
Q ss_pred cCCC--CCCcc----CHHHHHHHHHhcCCEEEEeccccccccccCC-CC-CCCC-cceEEEeCCCCCCCCC--CceEEEE
Q 023191 202 GASA--YARLY----DYERIRKVCNKQKAIMLADMAHISGLVAAGV-IP-SPFE-YADVVTTTTHKSLRGP--RGAMIFF 270 (286)
Q Consensus 202 ~~~n--~g~~~----~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~-~~~~-~~D~v~~s~~K~l~gp--~gG~l~~ 270 (286)
+|.+ +|... ++++|.++|++||+++|+|++|. |....+. .. ..+. ..|++ +++|+|++. ++|++++
T Consensus 219 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G~v~~ 295 (433)
T 1z7d_A 219 EPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPISAVLA 295 (433)
T ss_dssp CSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEE
T ss_pred ECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeEEEEE
Confidence 7443 46443 69999999999999999999985 4321111 00 0011 36776 567999764 5799999
Q ss_pred ecchhhhhcc
Q 023191 271 RKGVKEINKQ 280 (286)
Q Consensus 271 ~~~~~~~~~~ 280 (286)
++++.+..+.
T Consensus 296 ~~~~~~~l~~ 305 (433)
T 1z7d_A 296 NDDIMLVIKP 305 (433)
T ss_dssp CHHHHTTCCT
T ss_pred CHHHHhhhcc
Confidence 9887766654
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=133.12 Aligned_cols=218 Identities=12% Similarity=0.087 Sum_probs=130.3
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
..+++..+.+ ..+|.+++++.+.+.... .+. ...+..++..+++++++++++...++ +|++++|
T Consensus 44 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~------~~~~~~~~~~~l~~~la~~~~~~~~~---~v~~~~g 112 (439)
T 3dxv_A 44 ELIDLSGAWGAASLGYGHPAIVAAVSAAAANPA--GAT------ILSASNAPAVTLAERLLASFPGEGTH---KIWFGHS 112 (439)
T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCS--CSC------SSSSEEHHHHHHHHHHHHTTTCTTTE---EEEEESS
T ss_pred EEEECCCchhhccCCCCCHHHHHHHHHHHHhcc--Ccc------ccccCCHHHHHHHHHHHHhCCCCCCC---EEEEeCC
Confidence 3467765554 158999999988876521 121 11223355666778999988654421 4888888
Q ss_pred hH-HHHHHHHHh--cCCCCeEEeccCCCCcccCccccc-------cccccccceeeeEEEecccCCCCCCC-----CHHH
Q 023191 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQT-------DTKKISAVSIFFETMPYRLNESTGYI-----DYDQ 186 (286)
Q Consensus 122 ~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~-------~~~~~~~~g~~~~~v~~~~~~~~~~~-----d~e~ 186 (286)
++ ++..++.++ ..+++.|+++++.|.+........ ++.........+..++ .+ ..+.. |+++
T Consensus 113 gsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~d~~~ 189 (439)
T 3dxv_A 113 GSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDP--YR-PYRNDPTGDAILTL 189 (439)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCS--SS-CBTTBTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcC--CC-cccccccHHHHHHH
Confidence 88 888777765 446778888886665443211100 0000000000011122 11 11112 7999
Q ss_pred HHHHhh---hcCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCC-CC-CCCC-cceEEEe
Q 023191 187 LEKSAT---LFRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV-IP-SPFE-YADVVTT 254 (286)
Q Consensus 187 l~~~i~---~~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~-~~~~-~~D~v~~ 254 (286)
|++++. ..++++|++++.+ .|...+ +++|.++|++||+++|+|++|+ |....+. .. ..+. ..|++
T Consensus 190 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~~~~~~~~~~~di~-- 266 (439)
T 3dxv_A 190 LTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRLHCFEHEGFVPDIL-- 266 (439)
T ss_dssp HHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSSSGGGGTTCCCSEE--
T ss_pred HHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhcCCCCCEE--
Confidence 999994 3367788887443 456666 9999999999999999999986 3211111 10 0011 25666
Q ss_pred CCCCCCCC-CCceEEEEecchhhhhccC
Q 023191 255 TTHKSLRG-PRGAMIFFRKGVKEINKQG 281 (286)
Q Consensus 255 s~~K~l~g-p~gG~l~~~~~~~~~~~~~ 281 (286)
|++|+|++ .+.|++++++++.+..++.
T Consensus 267 s~sK~~~~G~riG~~~~~~~~~~~~~~~ 294 (439)
T 3dxv_A 267 VLGKGLGGGLPLSAVIAPAEILDCASAF 294 (439)
T ss_dssp EECGGGGTTSCCEEEEEEHHHHTSCSSS
T ss_pred EEcchhcCCcceEEEEECHHHHhhhcCC
Confidence 66798864 3459999999887766643
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=132.95 Aligned_cols=208 Identities=14% Similarity=0.062 Sum_probs=119.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--- 133 (286)
.+|.+++++.+.+.... .+.. ..+..+...+++++++++++.+.+ +|++++|++ ++..+++++.
T Consensus 46 ~~p~v~~a~~~~~~~~~--~~~~------~~~~~~~~~~l~~~la~~~~~~~~----~v~~~~gg~ea~~~al~~~~~~~ 113 (430)
T 3i4j_A 46 GRAEVGERMAAQAARLP--FVHG------SQFSSDVLEEYAGRLARFVGLPTF----RFWAVSGGSEATESAVKLARQYH 113 (430)
T ss_dssp CCHHHHHHHHHHHHHCC--CCCT------TTCEEHHHHHHHHHHHHHTTCTTC----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc--cccc------cccCCHHHHHHHHHHHHhCCCCCC----EEEEeCcHHHHHHHHHHHHHHHH
Confidence 38999999988775421 1111 112234556677889999987664 599999988 8887887775
Q ss_pred -----CCCCeEEeccCCCCcccCccccccccc-----ccccee--eeEEEecccCCCCCCCCHHHHHHHhhh---cCCcE
Q 023191 134 -----KPHDRIMALDLPHGGHLSHGYQTDTKK-----ISAVSI--FFETMPYRLNESTGYIDYDQLEKSATL---FRPKL 198 (286)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~-----~~~~g~--~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~tk~ 198 (286)
.++|.|++.++.|.++........... ..-... .+..++.+.....+..|+++|++++++ .++++
T Consensus 114 ~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~ 193 (430)
T 3i4j_A 114 VERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAA 193 (430)
T ss_dssp HHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEE
T ss_pred HhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEE
Confidence 558899999977766532111100000 000000 111122110000022467889998873 35667
Q ss_pred EEEcCCCC---CCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCC--CCC-CCCcceEEEeCCCCCCCC--CCc
Q 023191 199 IVAGASAY---ARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPS-PFEYADVVTTTTHKSLRG--PRG 265 (286)
Q Consensus 199 v~i~~~n~---g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~-~~~~~D~v~~s~~K~l~g--p~g 265 (286)
|+++|+|. |...+ +++|.++|++||+++|+|++|. ++...... ... . ...|+++ ++|+|++ .+.
T Consensus 194 vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~-~~~di~t--~sK~l~~G~~r~ 270 (430)
T 3i4j_A 194 FMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSG-VTPDIAV--LGKGLAAGYAPL 270 (430)
T ss_dssp EEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTT-CCCSEEE--ECGGGTTTSSCC
T ss_pred EEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcC-CCCcEEE--EcccccCCcccc
Confidence 77765442 33344 8999999999999999999976 32211000 001 1 0256665 4599865 344
Q ss_pred eEEEEecchhhhhcc
Q 023191 266 AMIFFRKGVKEINKQ 280 (286)
Q Consensus 266 G~l~~~~~~~~~~~~ 280 (286)
|++++++++.+..++
T Consensus 271 G~~~~~~~i~~~~~~ 285 (430)
T 3i4j_A 271 AGLLAAPQVYETVMG 285 (430)
T ss_dssp EEEEECHHHHHHHHH
T ss_pred EEEEECHHHHHHHhc
Confidence 999999888776654
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7e-15 Score=134.05 Aligned_cols=196 Identities=12% Similarity=0.161 Sum_probs=122.3
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~-- 134 (286)
.++.+++++.+.+.... +... .| ..++.+++++++++++|.+ +|++++|++ ++.+++.++..
T Consensus 74 ~~p~v~~ai~~~~~~~~---~~~~-~~-----~~~~~~~l~~~la~~~g~~------~v~~~~ggteA~~~al~~~~~~~ 138 (420)
T 2pb2_A 74 CHPALVEALKSQGETLW---HTSN-VF-----TNEPALRLGRKLIDATFAE------RVLFMNSGTEANETAFKLARHYA 138 (420)
T ss_dssp TCHHHHHHHHHHHTTCC---CCCT-TS-----CCHHHHHHHHHHHHHSSCS------EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc---cccC-cc-----CCHHHHHHHHHHHhhCCCC------eEEEeCCHHHHHHHHHHHHHHHh
Confidence 58999999998876521 1111 11 1244555678888888743 488888888 88878887764
Q ss_pred -----CC-CeEEeccCCCCcccCccccccccc-----cccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcC
Q 023191 135 -----PH-DRIMALDLPHGGHLSHGYQTDTKK-----ISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA 203 (286)
Q Consensus 135 -----~G-d~Vl~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~ 203 (286)
+| ++|+++++.|.+............ ..-....+..++ . .|+++|++++++ ++++|++++
T Consensus 139 ~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~--~------~d~~~le~~i~~-~~~~vi~~p 209 (420)
T 2pb2_A 139 CVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVP--F------NDLHAVKAVMDD-HTCAVVVEP 209 (420)
T ss_dssp HHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEEC--T------TCHHHHHHHCCT-TEEEEEECS
T ss_pred hhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEec--C------CCHHHHHHHhcc-CceEEEEeC
Confidence 77 589999977765432111000000 000000022222 1 389999999987 899999974
Q ss_pred CC-CC-C----ccCHHHHHHHHHhcCCEEEEeccccccccccCCCC--CCCC-cceEEEeCCCCCCCCC-CceEEEEecc
Q 023191 204 SA-YA-R----LYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPFE-YADVVTTTTHKSLRGP-RGAMIFFRKG 273 (286)
Q Consensus 204 ~n-~g-~----~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~--~~~~-~~D~v~~s~~K~l~gp-~gG~l~~~~~ 273 (286)
.+ .+ . ..++++|.++|++||+++|+|++|. |....+... ..+. ..|+++ ++|+|+++ +.|+++++++
T Consensus 210 ~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~-g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~~~~~~ 286 (420)
T 2pb2_A 210 IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQC-GMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAMLTTQE 286 (420)
T ss_dssp EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECHH
T ss_pred CcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCc-CcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEEEEhHH
Confidence 44 33 2 3568999999999999999999984 432212100 0011 268774 57999754 3499999888
Q ss_pred hhhhhcc
Q 023191 274 VKEINKQ 280 (286)
Q Consensus 274 ~~~~~~~ 280 (286)
+.+..++
T Consensus 287 l~~~l~~ 293 (420)
T 2pb2_A 287 IASAFHV 293 (420)
T ss_dssp HHTTCC-
T ss_pred HHHhhcC
Confidence 7666554
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=131.24 Aligned_cols=207 Identities=13% Similarity=0.096 Sum_probs=127.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~-- 134 (286)
.++++++++.+.+.+.. + ..+.. +..++..++++.++++++.+.+ +|++++|++ ++.++++++..
T Consensus 67 ~~~~v~~a~~~~~~~~~---~--~~~~~---~~~~~~~~l~~~la~~~~~~~~----~v~~~~ggsea~~~al~~~~~~~ 134 (449)
T 3a8u_X 67 TRKEIQEAVAKQLSTLD---Y--SPGFQ---YGHPLSFQLAEKITDLTPGNLN----HVFFTDSGSECALTAVKMVRAYW 134 (449)
T ss_dssp SCHHHHHHHHHHTTTCS---C--CCSSS---CCCHHHHHHHHHHHTTSSTTEE----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC---C--ccccc---cCCHHHHHHHHHHHHhCCCCCC----EEEEcCcHHHHHHHHHHHHHHHH
Confidence 48999999998876521 1 11101 1123444566888888876653 599999888 88878777653
Q ss_pred ------CCCeEEeccCCCCcccCcccccc-----ccc--cccceeeeEEEecccCC-CCC-CCC--------HHHHHHHh
Q 023191 135 ------PHDRIMALDLPHGGHLSHGYQTD-----TKK--ISAVSIFFETMPYRLNE-STG-YID--------YDQLEKSA 191 (286)
Q Consensus 135 ------~Gd~Vl~~~~~~~~~~~~~~~~~-----~~~--~~~~g~~~~~v~~~~~~-~~~-~~d--------~e~l~~~i 191 (286)
+||+|+++++.|.+......... +.. ....+ +..++++... ..+ .+| +++|++++
T Consensus 135 ~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l 212 (449)
T 3a8u_X 135 RLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQD--VDHLPHTLLASNAYSRGMPKEGGIALADELLKLI 212 (449)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCS--EEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCC--CeEecCCccccCccccCChHHHHHHHHHHHHHHH
Confidence 78999999977766532111000 000 00112 2334432210 111 246 99999998
Q ss_pred hh---cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCC-CCCC-cceEEEeCCCCC
Q 023191 192 TL---FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIP-SPFE-YADVVTTTTHKS 259 (286)
Q Consensus 192 ~~---~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~-~~~~-~~D~v~~s~~K~ 259 (286)
++ .++++|+++|.+ +|...+ +++|.++|++||+++|+|++|. +|.... ... ..+. ..|++ +++|+
T Consensus 213 ~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~~~~di~--s~sK~ 289 (449)
T 3a8u_X 213 ELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS-MFGADSFGVTPDLM--CIAKQ 289 (449)
T ss_dssp HHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHTCCCSEE--EECGG
T ss_pred HhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc-chhhhhcCCCCCEE--EEccc
Confidence 74 266777776543 566677 9999999999999999999984 543211 000 0001 25776 55699
Q ss_pred CCC--CCceEEEEecchhhhhccC
Q 023191 260 LRG--PRGAMIFFRKGVKEINKQG 281 (286)
Q Consensus 260 l~g--p~gG~l~~~~~~~~~~~~~ 281 (286)
|++ .+.|++++++++.+..+++
T Consensus 290 l~~G~~~~G~~~~~~~~~~~l~~~ 313 (449)
T 3a8u_X 290 VTNGAIPMGAVIASTEIYQTFMNQ 313 (449)
T ss_dssp GGTTSSCCEEEEEEHHHHHHHHTC
T ss_pred ccCCCCceEEEEECHHHHHHhhcc
Confidence 976 3568888998877766543
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-13 Score=125.54 Aligned_cols=206 Identities=10% Similarity=0.028 Sum_probs=124.8
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--- 133 (286)
.+|++++++.+.+.... +.. ..+..+...+++++++++++.+. +|++++|++ ++..+++.+.
T Consensus 66 ~~p~v~~A~~~~~~~~~---~~~------~~~~~~~~~~la~~l~~~~~~~~-----~v~~~~ggseA~~~al~~~~~~~ 131 (452)
T 3n5m_A 66 GRKELAEAAYKQLQTLS---YFP------MSQSHEPAIKLAEKLNEWLGGEY-----VIFFSNSGSEANETAFKIARQYY 131 (452)
T ss_dssp CCHHHHHHHHHHHTTCC---CCC------TTSEEHHHHHHHHHHHHHHTSCE-----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC---Ccc------cccCCHHHHHHHHHHHHhCCCCc-----eEEEeCchHHHHHHHHHHHHHHH
Confidence 47999999998886521 100 01223455567788888887654 388888888 8888888776
Q ss_pred --C---CCCeEEeccCCCCcccCcccc-----ccccccccceeeeEEEecccCCCCCC-CC---------HHHHHHHhh-
Q 023191 134 --K---PHDRIMALDLPHGGHLSHGYQ-----TDTKKISAVSIFFETMPYRLNESTGY-ID---------YDQLEKSAT- 192 (286)
Q Consensus 134 --~---~Gd~Vl~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~v~~~~~~~~~~-~d---------~e~l~~~i~- 192 (286)
. ++|+|+++++.|.+...-... .+.....-.......++.+.. -... -| +++|+++++
T Consensus 132 ~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~le~~l~~ 210 (452)
T 3n5m_A 132 AQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDC-YRMPGIERENIYDVECVKEVDRVMTW 210 (452)
T ss_dssp HTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCT-TTSTTTTTSCGGGCHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCcc-ccCccCCchhhHHHHHHHHHHHHHHh
Confidence 5 889999999887765311100 000000000001222322110 0000 12 899999987
Q ss_pred --hcCCcEEEEcC--CCCCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCCCC-cceEEEeCCCCCCCC
Q 023191 193 --LFRPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSPFE-YADVVTTTTHKSLRG 262 (286)
Q Consensus 193 --~~~tk~v~i~~--~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~~~-~~D~v~~s~~K~l~g 262 (286)
..++++|++++ +|+|...+ +++|.++|++||+++|+|++|. +|..........+. ..|+++ ++|++++
T Consensus 211 ~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~ 288 (452)
T 3n5m_A 211 ELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITS 288 (452)
T ss_dssp HCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGT
T ss_pred cCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEe--ecccccC
Confidence 23678888874 46555555 9999999999999999999976 32221100000011 256765 4598855
Q ss_pred C--CceEEEEecchhhhhcc
Q 023191 263 P--RGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 263 p--~gG~l~~~~~~~~~~~~ 280 (286)
. +.|++++++++.+..++
T Consensus 289 G~~~ig~~~~~~~i~~~~~~ 308 (452)
T 3n5m_A 289 AYLPLSATAVKREIYEAFKG 308 (452)
T ss_dssp TSSCCEEEEEEHHHHGGGCS
T ss_pred CCcceEEEEECHHHHHHHhh
Confidence 3 33999999998877753
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=132.90 Aligned_cols=207 Identities=13% Similarity=-0.001 Sum_probs=125.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~-- 134 (286)
.+|++++++.+.+.+.. ..+.. ..+..+...+++++++++++.+.+ .|++++|++ ++..++.++..
T Consensus 67 ~~p~v~~A~~~~~~~~~-~~~~~------~~~~~~~~~~la~~l~~~~~~~~~----~v~~~~ggseA~~~al~~~~~~~ 135 (459)
T 4a6r_A 67 GRKDFAEAARRQMEELP-FYNTF------FKTTHPAVVELSSLLAEVTPAGFD----RVFYTNSGSESVDTMIRMVRRYW 135 (459)
T ss_dssp CCHHHHHHHHHHHHHCS-CCCTT------SSSCCHHHHHHHHHHHHHSCTTCC----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ccccc------cccCCHHHHHHHHHHHHhCCCCCC----EEEEeCchHHHHHHHHHHHHHHH
Confidence 47999999988876521 11111 112234555677899999887664 599999888 88888888764
Q ss_pred ------CCCeEEeccCCCCcccCcc-----ccccccccccceeeeEEEeccc--CCCCCCCC--------HHHHHHHhhh
Q 023191 135 ------PHDRIMALDLPHGGHLSHG-----YQTDTKKISAVSIFFETMPYRL--NESTGYID--------YDQLEKSATL 193 (286)
Q Consensus 135 ------~Gd~Vl~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~d--------~e~l~~~i~~ 193 (286)
++++|+++++.|.++..-. ...++.........+..++++. ..+++ .| +++|++++.+
T Consensus 136 ~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~ 214 (459)
T 4a6r_A 136 DVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILE 214 (459)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHH
Confidence 6799999998877653110 0011100001111123343222 10112 45 7889988863
Q ss_pred ---cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCC-CCC-cceEEEeCCCCCCC
Q 023191 194 ---FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPS-PFE-YADVVTTTTHKSLR 261 (286)
Q Consensus 194 ---~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~-~~~-~~D~v~~s~~K~l~ 261 (286)
.++++|+++|.+ .|...+ +++|.++|++||+++|+|++|. +|... ..... .+. ..|++++ +|+++
T Consensus 215 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~~~~pdi~t~--sK~l~ 291 (459)
T 4a6r_A 215 IGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG-EWFGHQHFGFQPDLFTA--AKGLS 291 (459)
T ss_dssp HCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSHHHHHTCCCSEEEE--CGGGG
T ss_pred cCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeeh--hhhhc
Confidence 256777776544 334444 9999999999999999999976 22111 11100 001 2577765 59987
Q ss_pred C--CCceEEEEecchhhhhc
Q 023191 262 G--PRGAMIFFRKGVKEINK 279 (286)
Q Consensus 262 g--p~gG~l~~~~~~~~~~~ 279 (286)
| .+.|++++++++.+...
T Consensus 292 gg~~~lg~v~~~~~i~~~~~ 311 (459)
T 4a6r_A 292 SGYLPIGAVFVGKRVAEGLI 311 (459)
T ss_dssp TTSSCCEEEEECHHHHHHHH
T ss_pred CCCCCccceeeCHHHHHHhh
Confidence 6 45599999998877654
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-14 Score=129.03 Aligned_cols=208 Identities=12% Similarity=-0.008 Sum_probs=126.4
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--- 133 (286)
.+|.+++++.+.+.+.. ..+.. ..+..+++.+++++++++++.+.+ +|++++|++ ++.++++++.
T Consensus 68 ~~p~v~~A~~~~~~~~~-~~~~~------~~~~~~~~~~la~~l~~~~~~~~~----~v~~~~gGseA~~~al~~~~~~~ 136 (460)
T 3gju_A 68 GRQKIADAIATQAKNLA-YYHAY------VGHGTEASITLAKMIIDRAPKGMS----RVYFGLSGSDANETNIKLIWYYN 136 (460)
T ss_dssp CCHHHHHHHHHHHHHHS-CCCCC------TTCCCHHHHHHHHHHHHHSCTTEE----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ccccc------cccCCHHHHHHHHHHHhhCCCCcC----EEEEeCchHHHHHHHHHHHHHHH
Confidence 47999999988775421 11111 112224555677888888876653 599999888 8888888776
Q ss_pred -----CCCCeEEeccCCCCcccCcc-----ccccccccccceeeeEEEeccc--CCCCCCCC--------HHHHHHHhhh
Q 023191 134 -----KPHDRIMALDLPHGGHLSHG-----YQTDTKKISAVSIFFETMPYRL--NESTGYID--------YDQLEKSATL 193 (286)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~d--------~e~l~~~i~~ 193 (286)
.+++.|+++++.|.+..... ...++.........+..++++. ..++...+ +++|++++.+
T Consensus 137 ~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~ 216 (460)
T 3gju_A 137 NVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILA 216 (460)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHh
Confidence 35799999998886654111 1111111111111233344322 11112233 6889988863
Q ss_pred ---cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCC-CC-cceEEEeCCCCCCC
Q 023191 194 ---FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSP-FE-YADVVTTTTHKSLR 261 (286)
Q Consensus 194 ---~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~-~~-~~D~v~~s~~K~l~ 261 (286)
.++++|+++|.| .|...+ +++|.++|++||+++|+|++|. +|-.. ...... +. ..|++++ +|+++
T Consensus 217 ~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g-~~~~~~~~~~~pdi~t~--sK~l~ 293 (460)
T 3gju_A 217 EGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGIKPDLITI--AKGLT 293 (460)
T ss_dssp HCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEE--CGGGT
T ss_pred cCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-ccchHhhcCCCCCeeee--ehhhc
Confidence 367788887544 334343 9999999999999999999976 32211 110000 00 2567654 59997
Q ss_pred C--CCceEEEEecchhhhhc
Q 023191 262 G--PRGAMIFFRKGVKEINK 279 (286)
Q Consensus 262 g--p~gG~l~~~~~~~~~~~ 279 (286)
| .+.|++++++++.+..+
T Consensus 294 gG~~~lg~v~~~~~i~~~~~ 313 (460)
T 3gju_A 294 SAYAPLSGVIVADRVWQVLV 313 (460)
T ss_dssp TTSSCCEEEEEEHHHHHHHH
T ss_pred CCCCCeEEEEECHHHHHHHh
Confidence 7 45699999998877764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=126.62 Aligned_cols=195 Identities=13% Similarity=0.064 Sum_probs=118.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~-- 134 (286)
.+|.+++++.+.+......+++ . ....+++++++++++ +.+ .|++++|++ ++.+++..+..
T Consensus 72 ~~p~v~~a~~~~~~~~~~~~~~-------~----~~~~~l~~~la~~~~-~~~----~v~~~~sGsea~~~ai~~a~~~~ 135 (434)
T 3l44_A 72 AHPHITKAITTAAENGVLYGTP-------T----ALEVKFAKMLKEAMP-ALD----KVRFVNSGTEAVMTTIRVARAYT 135 (434)
T ss_dssp TCHHHHHHHHHHHHHCSCCSSC-------C----HHHHHHHHHHHHHCT-TCS----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCcCCCCC-------C----HHHHHHHHHHHHhCC-CCC----EEEEeCchHHHHHHHHHHHHHhh
Confidence 4899999998877652211121 1 233345577888886 443 588888888 88877776644
Q ss_pred CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCC------------CCCHHHHHHHhhh--cCCcEEE
Q 023191 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG------------YIDYDQLEKSATL--FRPKLIV 200 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~~d~e~l~~~i~~--~~tk~v~ 200 (286)
++++|+++++.|.++...... ..|........+.. ... .-|+++|++++++ .++++|+
T Consensus 136 ~~~~vi~~~~~yhg~~~~~~~-------~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 207 (434)
T 3l44_A 136 GRTKIMKFAGCYHGHSDLVLV-------AAGSGPSTLGTPDS-AGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAIL 207 (434)
T ss_dssp CCCEEEEETTCCCCSSGGGGB-------C-------CCCBSS-TTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCEEEEEcCccCCCcHHHHh-------hcCCcccccCCCCc-CCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEE
Confidence 789999999777655321110 11100000000000 000 0189999999874 2567777
Q ss_pred EcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCCC-C-CCC-cceEEEeCCCCCCCCC-CceEEEE
Q 023191 201 AGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-S-PFE-YADVVTTTTHKSLRGP-RGAMIFF 270 (286)
Q Consensus 201 i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~-~~~-~~D~v~~s~~K~l~gp-~gG~l~~ 270 (286)
++|.| .|...+ +++|.++|++||+++|+|++|. |. ..+... . .+. ..|+++ ++|.|+++ +.|++++
T Consensus 208 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~-g~-~~g~~~~~~~~~~~~di~t--~sK~~~~G~~iG~~~~ 283 (434)
T 3l44_A 208 VEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT-AF-RFMYGGAQDLLGVTPDLTA--LGKVIGGGLPIGAYGG 283 (434)
T ss_dssp ECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TT-TSSSSCHHHHHTCCCSEEE--EEGGGGTTSSCEEEEE
T ss_pred EcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-ce-eccccHHHHHcCCCCCeee--hhhhhcCCcCeeeEEE
Confidence 77555 345555 9999999999999999999975 32 111100 0 000 256654 45988654 3499999
Q ss_pred ecchhhhhcc
Q 023191 271 RKGVKEINKQ 280 (286)
Q Consensus 271 ~~~~~~~~~~ 280 (286)
++++.+..++
T Consensus 284 ~~~i~~~~~~ 293 (434)
T 3l44_A 284 KKEIMEQVAP 293 (434)
T ss_dssp CHHHHTTBTT
T ss_pred cHHHHHhhcc
Confidence 9988776654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.3e-14 Score=127.46 Aligned_cols=206 Identities=12% Similarity=0.020 Sum_probs=125.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc--C
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--K 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--~ 134 (286)
.+|++++++.+.+.... +... .|. .+...++++.++++++.+.+ +|++++|++ ++..+++++. .
T Consensus 60 ~~p~v~~a~~~~~~~~~---~~~~-~~~-----~~~~~~l~~~la~~~~~~~~----~v~~~~gg~ea~~~a~~~~~~~~ 126 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKLD---HLFS-EML-----SRPVVDLATRLANITPPGLD----RALLLSTGAESNEAAIRMAKLVT 126 (433)
T ss_dssp TCHHHHHHHHHHHHHCC---CCCT-TCC-----CHHHHHHHHHHHHHSCTTCC----EEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCc---cccc-ccC-----CHHHHHHHHHHHHhCCCCcC----EEEEeCchHHHHHHHHHHHHHhh
Confidence 48999999988876521 1111 111 13444566888889987654 599998888 8887776543 3
Q ss_pred CCCeEEeccCCCCcccCcccc----ccccc--cccceeeeEEEecccCC-CCC--------CCCHHHHHHHhhh---cCC
Q 023191 135 PHDRIMALDLPHGGHLSHGYQ----TDTKK--ISAVSIFFETMPYRLNE-STG--------YIDYDQLEKSATL---FRP 196 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~----~~~~~--~~~~g~~~~~v~~~~~~-~~~--------~~d~e~l~~~i~~---~~t 196 (286)
.+|+|+++++.|.+....... .+... ....+ ++.++++... ..+ .+|+++|++.+++ .++
T Consensus 127 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 204 (433)
T 1zod_A 127 GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNL 204 (433)
T ss_dssp TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCE
T ss_pred CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCC--ceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCe
Confidence 468999999777654311000 00000 11123 3334432110 011 2469999999874 366
Q ss_pred cEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCC-CC-cceEEEeCCCCCCCCC-Cce
Q 023191 197 KLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSP-FE-YADVVTTTTHKSLRGP-RGA 266 (286)
Q Consensus 197 k~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~-~~-~~D~v~~s~~K~l~gp-~gG 266 (286)
++|+++|.| +|...+ +++|.++|++||+++|+|++|+ +|... ...... +. ..|++ +++|+|+++ +.|
T Consensus 205 ~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g-~~~~~~~~~~~~di~--s~sK~~~~G~~ig 281 (433)
T 1zod_A 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGVTPDIL--TLSKTLGAGLPLA 281 (433)
T ss_dssp EEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEE--EECHHHHTTSSCE
T ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc-hHhHHhhcCCCCCEE--EecccccCCCCee
Confidence 777776543 565555 9999999999999999999987 33221 111000 01 25665 556998653 339
Q ss_pred EEEEecchhhhhccC
Q 023191 267 MIFFRKGVKEINKQG 281 (286)
Q Consensus 267 ~l~~~~~~~~~~~~~ 281 (286)
++++++++.+..+++
T Consensus 282 ~~~~~~~~~~~~~~~ 296 (433)
T 1zod_A 282 AIVTSAAIEERAHEL 296 (433)
T ss_dssp EEEECHHHHHHHHHT
T ss_pred EEEEhHHHHHhhccC
Confidence 999998887666543
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=126.18 Aligned_cols=205 Identities=12% Similarity=0.096 Sum_probs=125.2
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.+++..+.. ..+|.+++++.+.+.... .+ +. ..+.+.+++++++++++ +.+ +|++++|
T Consensus 53 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~------~~---~~~~~~~la~~l~~~~~-~~~----~v~~~~g 116 (427)
T 3fq8_A 53 RYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT--SF------GA---PCALENVLAEMVNDAVP-SIE----MVRFVNS 116 (427)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS--CC------SS---CCHHHHHHHHHHHHHST-TCS----EEEEESS
T ss_pred EEEECCCchhhhccCCCCHHHHHHHHHHHHhCC--Cc------CC---CCHHHHHHHHHHHHhCC-CCC----EEEEeCC
Confidence 3466655432 258999999998876521 11 11 12455567788888887 443 5889888
Q ss_pred hH-HHHHHHHHh--cCCCCeEEeccCCCCcccCcccccccccccc------ce------eeeEEEecccCCCCCCCCHHH
Q 023191 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISA------VS------IFFETMPYRLNESTGYIDYDQ 186 (286)
Q Consensus 122 ~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~------~g------~~~~~v~~~~~~~~~~~d~e~ 186 (286)
++ ++.+++... ...+++|+++++.|.+............... .+ ..+..++ . -|+++
T Consensus 117 gsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~d~~~ 188 (427)
T 3fq8_A 117 GTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP--Y------NDLEA 188 (427)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEE--T------TCHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecC--C------CCHHH
Confidence 88 887666332 2345789988877765432111000000000 00 0011111 1 18999
Q ss_pred HHHHhhhc--CCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCC----CCCCCcceEEEe
Q 023191 187 LEKSATLF--RPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVI----PSPFEYADVVTT 254 (286)
Q Consensus 187 l~~~i~~~--~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~----~~~~~~~D~v~~ 254 (286)
|+++++++ ++++|++++.| .|...+ +++|.++|++||+++|+|++|. |. ..+.. ... ...|++++
T Consensus 189 le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~-~~~di~t~ 265 (427)
T 3fq8_A 189 VKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFG-VTPDLTTL 265 (427)
T ss_dssp HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTT-CCCSEEEE
T ss_pred HHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcC-CCCChhhh
Confidence 99999763 56778777444 456666 9999999999999999999986 43 11110 011 02576655
Q ss_pred CCCCCCCC-CCceEEEEecchhhhhcc
Q 023191 255 TTHKSLRG-PRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 255 s~~K~l~g-p~gG~l~~~~~~~~~~~~ 280 (286)
| |+|++ .+.|++++++++.+..++
T Consensus 266 s--K~~~~G~~~G~~~~~~~~~~~~~~ 290 (427)
T 3fq8_A 266 G--KIIGGGLPVGAYGGKREIMQLVAP 290 (427)
T ss_dssp C--GGGGTTSSCEEEEECHHHHTTBTT
T ss_pred h--hhhhCCcceEEEEEcHHHHHhhcc
Confidence 4 99864 356999999888777664
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-15 Score=138.11 Aligned_cols=199 Identities=10% Similarity=-0.101 Sum_probs=129.6
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcc-h---HHHHHHHHHHHHHHHCCCCCCCcceeEEeCC
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNE-Y---IDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s 120 (286)
..++|..+++. +++.+++++.+.+....... ..|+... + ..+|++++++++.+..+...+. .+|++|+
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~----~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~--~~iv~t~ 130 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHR----MSYFFNPVSNFISFELEKTIKELHEVVGNAAAKD--RYIVFGV 130 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTT----CSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTT--CEEEEES
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhcCCccc----ccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCC--CEEEEeC
Confidence 45888888884 34566777776663211111 0123333 4 6789999998888766542221 3699999
Q ss_pred ChH-HHHHHHHHh--------cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHh
Q 023191 121 GSP-SNFQVYTAL--------LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 191 (286)
Q Consensus 121 G~~-a~~~~l~a~--------~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i 191 (286)
|++ ++.+++.++ ++|||+|++++|.|.+ +...+...|.+++. +.+|+++|++.+
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~--------~~~~~~~~g~~~~~---------~~~d~~~l~~~~ 193 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPV--------FREQTKYFDKKGYV---------WAGNAANYVNVS 193 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH--------HHHHHHHSCBTTEE---------EEEEGGGGTTCS
T ss_pred CHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCccc--------HHHHHHHcCCeeee---------ecCCHHHHHHhh
Confidence 999 888899999 9999999999955543 33344455544321 345677888877
Q ss_pred hhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCC--CCCceE
Q 023191 192 TLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLR--GPRGAM 267 (286)
Q Consensus 192 ~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~--gp~gG~ 267 (286)
++ ++|+|+++ |+| +|...+ + +++ ++..+.|++++..... ..... ...+++++|++|+++ |.+.|+
T Consensus 194 ~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s--~~~~~-~~~~i~~~S~SK~~g~~G~RiG~ 262 (427)
T 2hox_A 194 NP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYT--PIKYK-ADEDILLFTMSKFTGHSGSRFGW 262 (427)
T ss_dssp CG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTS--CCCSC-BCCSEEEEEHHHHTSCGGGCCEE
T ss_pred cC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCC--ccccC-CCceEEEEeChhcCCCCCceEEE
Confidence 76 78999887 777 777777 3 233 5678999886421111 11111 237899999999874 344599
Q ss_pred EEEe-cchhhhhc
Q 023191 268 IFFR-KGVKEINK 279 (286)
Q Consensus 268 l~~~-~~~~~~~~ 279 (286)
++++ +++.+.++
T Consensus 263 ~~~~~~~l~~~l~ 275 (427)
T 2hox_A 263 ALIKDESVYNNLL 275 (427)
T ss_dssp EEECCHHHHHHHH
T ss_pred EEECCHHHHHHHH
Confidence 9995 66665554
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=125.81 Aligned_cols=205 Identities=8% Similarity=0.006 Sum_probs=117.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~-- 134 (286)
.+|.+++++.+.+.... .+.. ..+..+.+.+++++++++++.+.+ .|++++|++ ++.+++.++..
T Consensus 61 ~~p~v~~A~~~~~~~~~--~~~~------~~~~~~~~~~la~~l~~~~~~~~~----~v~~~~sGseA~~~al~~~~~~~ 128 (448)
T 3dod_A 61 RKKELDDAIKKQLGKIA--HSTL------LGMTNVPATQLAETLIDISPKKLT----RVFYSDSGAEAMEIALKMAFQYW 128 (448)
T ss_dssp SCHHHHHHHHHHHTTCS--CCCC------SSSEEHHHHHHHHHHHHHSCTTEE----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc--Cccc------cccCCHHHHHHHHHHHHhCCCCCC----EEEEeCchHHHHHHHHHHHHHHH
Confidence 47999999998876521 1111 112224455677889998876553 588888888 88888877754
Q ss_pred --CC----CeEEeccCCCCcccCccccc-----cccccccceeeeEEEecccCCCCCCC-----------CHHHHHHHhh
Q 023191 135 --PH----DRIMALDLPHGGHLSHGYQT-----DTKKISAVSIFFETMPYRLNESTGYI-----------DYDQLEKSAT 192 (286)
Q Consensus 135 --~G----d~Vl~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~v~~~~~~~~~~~-----------d~e~l~~~i~ 192 (286)
+| |+|+++++.|.+........ +..........+..++.+ ..+.. |+++|+++++
T Consensus 129 ~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~le~~l~ 205 (448)
T 3dod_A 129 KNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP---YVYRSESGDPDECRDQCLRELAQLLE 205 (448)
T ss_dssp HHTTCTTCCEEEEEC-----------------------------CEEECCC---CCTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC---ccccCCccchhhhhHHHHHHHHHHHH
Confidence 44 99999997776543211110 000000000012223221 22222 4899999887
Q ss_pred --hcCCcEEEEcCC--C-CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCC-CCC-cceEEEeCCCCCC
Q 023191 193 --LFRPKLIVAGAS--A-YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPS-PFE-YADVVTTTTHKSL 260 (286)
Q Consensus 193 --~~~tk~v~i~~~--n-~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~-~~~-~~D~v~~s~~K~l 260 (286)
..++++|+++|. | .|...+ +++|.++|++||+++|+|++|. +|... ..... .+. ..|++++ +|++
T Consensus 206 ~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g-~~~a~~~~~~~~di~t~--sK~l 282 (448)
T 3dod_A 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTG-KMFACEHENVQPDLMAA--GKGI 282 (448)
T ss_dssp HHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSGGGGGTCCCSEEEE--CGGG
T ss_pred hCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCccc-chhhhhhcCCCCCEEEe--cccc
Confidence 225677777643 3 444444 9999999999999999999986 22111 11000 001 2566654 5998
Q ss_pred CCC--CceEEEEecchhhhhcc
Q 023191 261 RGP--RGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 261 ~gp--~gG~l~~~~~~~~~~~~ 280 (286)
++. +.|++++++++.+..++
T Consensus 283 ~~G~~~ig~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 283 TGGYLPIAVTFATEDIYKAFYD 304 (448)
T ss_dssp GTTSSCCEEEEEEHHHHHTTCS
T ss_pred cCCcCceEEEEECHHHHHHhhh
Confidence 654 44999999988877654
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=125.52 Aligned_cols=207 Identities=12% Similarity=0.102 Sum_probs=124.7
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
..+++..+.. ..++.+++++.+.+.... .+ + +..+++++++++++++++ +.+ +|++++|
T Consensus 58 ~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~--~~------~---~~~~~~~~la~~l~~~~~-~~~----~v~~~~g 121 (453)
T 2cy8_A 58 VYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV--QY------A---ASHPLEVRWAERIVAAFP-SIR----KLRFTGS 121 (453)
T ss_dssp EEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC--SS------C---SSCHHHHHHHHHHHHHCT-TCS----EEEEESC
T ss_pred EEEECcccHhhcccCCCCHHHHHHHHHHHHhCC--CC------C---CCCHHHHHHHHHHHhhCC-CCC----EEEEeCC
Confidence 3467765532 368999999998876521 11 1 134677788899999886 443 5888888
Q ss_pred hH-HHHHHHHH---hcCCCCeEEeccCCCCcccCccccccccc---cccceeee----EEEecccCCCCCCCCHHHHHHH
Q 023191 122 SP-SNFQVYTA---LLKPHDRIMALDLPHGGHLSHGYQTDTKK---ISAVSIFF----ETMPYRLNESTGYIDYDQLEKS 190 (286)
Q Consensus 122 ~~-a~~~~l~a---~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~---~~~~g~~~----~~v~~~~~~~~~~~d~e~l~~~ 190 (286)
++ ++.+++++ +.++ +.|+++++.|.++........... ....|... ..++++. .|+++|+++
T Consensus 122 g~eA~~~al~~ar~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~d~~~le~~ 194 (453)
T 2cy8_A 122 GTETTLLALRVARAFTGR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP------DDIEGMREV 194 (453)
T ss_dssp HHHHHHHHHHHHHHHHCC-CEEEEECC----------------------------CGGGEEEECT------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC------CCHHHHHHH
Confidence 88 88877776 5554 678888876665432111000000 00012100 0111111 389999999
Q ss_pred hhh--cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCC-CC-CCC-cceEEEeCCCCC
Q 023191 191 ATL--FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVI-PS-PFE-YADVVTTTTHKS 259 (286)
Q Consensus 191 i~~--~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-~~-~~~-~~D~v~~s~~K~ 259 (286)
+++ .++++|+++|.+ +|...+ +++|.++|++||+++|+|++|+ |. ..+.. .. .+. ..|++ +++|+
T Consensus 195 l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~ 270 (453)
T 2cy8_A 195 FANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDVQPDLT--CLAKA 270 (453)
T ss_dssp HHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCSEE--EEEGG
T ss_pred HHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCCCCcEE--EEChh
Confidence 874 267788877543 566666 9999999999999999999986 54 21210 00 001 25766 56699
Q ss_pred CCC-CCceEEEEecchhhhhcc
Q 023191 260 LRG-PRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 260 l~g-p~gG~l~~~~~~~~~~~~ 280 (286)
|++ .+.|++++++++.+..++
T Consensus 271 l~~G~~~G~v~~~~~~~~~l~~ 292 (453)
T 2cy8_A 271 SAGGLPGGILGGREDVMGVLSR 292 (453)
T ss_dssp GGTTSSCEEEEECHHHHTTSSS
T ss_pred hhCCcceEEEechHHHHHHhcc
Confidence 975 466999999887776654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-13 Score=121.34 Aligned_cols=207 Identities=14% Similarity=0.131 Sum_probs=121.6
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.+++..+-. ..+|++++++.+.+.+....+++ . +...+++++++++++ ..+ .|++++|
T Consensus 54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~-------~----~~~~~la~~l~~~~~-~~~----~v~~~~s 117 (429)
T 4e77_A 54 AYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAP-------T----EMEVKMAQLVTDLVP-TMD----MVRMVNS 117 (429)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSC-------C----HHHHHHHHHHHHHST-TCS----EEEEESS
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCC-------C----HHHHHHHHHHHhhCC-CCC----EEEEeCc
Confidence 3466654432 24899999999887653211111 1 334446688888886 443 5888888
Q ss_pred hH-HHHHHHHHh--cCCCCeEEeccCCCCcccCcccccc-----------cccc-ccceeeeEEEecccCCCCCCCCHHH
Q 023191 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTD-----------TKKI-SAVSIFFETMPYRLNESTGYIDYDQ 186 (286)
Q Consensus 122 ~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~-----------~~~~-~~~g~~~~~v~~~~~~~~~~~d~e~ 186 (286)
++ ++..++... ..+++.|+++++.|.+......... ..++ .........+ + ..|+++
T Consensus 118 Gsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~d~~~ 189 (429)
T 4e77_A 118 GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTC--T------YNDLAS 189 (429)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEE--C------TTCHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeec--C------CCCHHH
Confidence 88 887777644 2467788888877665532100000 0000 0000001111 1 128999
Q ss_pred HHHHhhhc--CCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCCC-CCCC-cceEEEeCC
Q 023191 187 LEKSATLF--RPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFE-YADVVTTTT 256 (286)
Q Consensus 187 l~~~i~~~--~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~~~-~~D~v~~s~ 256 (286)
|+++++++ ++++|+++|.| .|...+ +++|.++|++||+++|+|++|. |........ ..+. ..|++ ++
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~r~g~~~~~~~~~~~pdi~--t~ 266 (429)
T 4e77_A 190 VRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GFRVALAGAQDYYHVIPDLT--CL 266 (429)
T ss_dssp HHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BTTTBTTCHHHHTTCCCSEE--EE
T ss_pred HHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CcccCcchHHHhcCCCCCee--ee
Confidence 99999752 55677766554 345555 9999999999999999999987 331111100 0001 25765 45
Q ss_pred CCCCCC-CCceEEEEecchhhhhcc
Q 023191 257 HKSLRG-PRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 257 ~K~l~g-p~gG~l~~~~~~~~~~~~ 280 (286)
+|+|++ .+.|++++++++.+..++
T Consensus 267 sK~~~~G~~~G~~~~~~~~~~~l~~ 291 (429)
T 4e77_A 267 GKIIGGGMPVGAFGGRREVMNALAP 291 (429)
T ss_dssp EGGGGTTSCCEEEEECHHHHTTBTT
T ss_pred cccccCCCCeEEEEECHHHHHHhcc
Confidence 598864 355999999888777664
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-13 Score=124.93 Aligned_cols=208 Identities=10% Similarity=-0.001 Sum_probs=125.3
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--- 133 (286)
.+|.+++|+.+.+.. ...++.. .+..+...++.++++++++.+.+ .|++++|++ ++..+++.+.
T Consensus 71 ~~p~v~~A~~~~l~~-~~~~~~~-------~~~~~~~~~la~~l~~~~~~~~~----~v~~~~sGseA~~~Aik~a~~~~ 138 (476)
T 3i5t_A 71 GRREIVDAMAHQAMV-LPYASPW-------YMATSPAARLAEKIATLTPGDLN----RIFFTTGGSTAVDSALRFSEFYN 138 (476)
T ss_dssp CCHHHHHHHHHHHHH-CCCCCTT-------TCBCHHHHHHHHHHHTTSSTTCC----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccCcccC-------ccCCHHHHHHHHHHHhcCCCCcC----EEEEeCchHHHHHHHHHHHHHHH
Confidence 489999999988765 2111110 11234555677899998876553 488888877 8887877775
Q ss_pred -----CCCCeEEeccCCCCcccCc-----cccccccccccceeeeEEEecccCCCCCCCC--------HHHHHHHhhh--
Q 023191 134 -----KPHDRIMALDLPHGGHLSH-----GYQTDTKKISAVSIFFETMPYRLNESTGYID--------YDQLEKSATL-- 193 (286)
Q Consensus 134 -----~~Gd~Vl~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d--------~e~l~~~i~~-- 193 (286)
..+++|+++++.|.++..- +...++.........+..++.+.....+..| +++|++++.+
T Consensus 139 ~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 218 (476)
T 3i5t_A 139 NVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG 218 (476)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC
Confidence 3467999999888765411 1111111100001112233322210111222 7889988863
Q ss_pred -cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccC--CC-CCCCCcceEEEeCCCCCCCC
Q 023191 194 -FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAG--VI-PSPFEYADVVTTTTHKSLRG 262 (286)
Q Consensus 194 -~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~--~~-~~~~~~~D~v~~s~~K~l~g 262 (286)
.++++|++++.+ .|...+ +++|.++|++||+++|+|++|. +|-.... .. ...+ ..|++++ .|+++|
T Consensus 219 ~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v-~pdi~t~--sK~l~~ 295 (476)
T 3i5t_A 219 PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGV-VPDIITF--AKGVTS 295 (476)
T ss_dssp GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCC-CCSEEEE--CGGGGT
T ss_pred CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCC-Ccchhhh--hhhhcC
Confidence 367788887444 343333 9999999999999999999986 2222110 01 1111 2677765 499876
Q ss_pred --CCceEEEEecchhhhhcc
Q 023191 263 --PRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 263 --p~gG~l~~~~~~~~~~~~ 280 (286)
.+.|++++++++.+...+
T Consensus 296 G~~plg~v~~~~~i~~~~~~ 315 (476)
T 3i5t_A 296 GYVPLGGLAISEAVLARISG 315 (476)
T ss_dssp TSSCCEEEEECHHHHHTTSG
T ss_pred CCcCeEEEEECHHHHHHHhc
Confidence 344999999988877664
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-14 Score=130.08 Aligned_cols=206 Identities=12% Similarity=0.019 Sum_probs=124.6
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~-- 134 (286)
.+|.+++++.+.+.... .+... .+..+...+++++++++++.+.+ .|++++|++ ++..++..+..
T Consensus 92 ~~p~v~~A~~~~~~~~~--~~~~~------~~~~~~~~~L~e~la~~~~~~~~----~v~~~~sGseA~~~Alk~a~~~~ 159 (457)
T 3tfu_A 92 GHPALDQALTTQLRVMN--HVMFG------GLTHEPAARLAKLLVDITPAGLD----TVFFSDSGSVSVEVAAKMALQYW 159 (457)
T ss_dssp TCHHHHHHHHHHHHHCS--CCCSS------SEECHHHHHHHHHHHHHSSTTEE----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc--Ccccc------ccCCHHHHHHHHHHHHhCCCCcC----EEEEeCcHHHHHHHHHHHHHHHH
Confidence 48999999988776521 11100 11123444577889999976653 588888888 88878877754
Q ss_pred -----CC-CeEEeccCCCCcccCccc------cccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh--cCCcEEE
Q 023191 135 -----PH-DRIMALDLPHGGHLSHGY------QTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRPKLIV 200 (286)
Q Consensus 135 -----~G-d~Vl~~~~~~~~~~~~~~------~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v~ 200 (286)
+| +.|+++++.|.+...... ..+.............++++.+ .....|+++|++++++ .++++|+
T Consensus 160 ~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~d~~~le~~l~~~~~~~aavi 238 (457)
T 3tfu_A 160 RGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPR-DYDPAYSAAFEAQLAQHAGELAAVV 238 (457)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCS-SCCHHHHHHHHHHHHHHGGGEEEEE
T ss_pred HhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCc-ccCHHHHHHHHHHHHhCCCCEEEEE
Confidence 55 488888877765431110 0011000001111233443322 1123588999999973 2678888
Q ss_pred EcC-CC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCC-CCC-cceEEEeCCCCCCCC--CCceEE
Q 023191 201 AGA-SA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPS-PFE-YADVVTTTTHKSLRG--PRGAMI 268 (286)
Q Consensus 201 i~~-~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~-~~~-~~D~v~~s~~K~l~g--p~gG~l 268 (286)
+++ .+ .|...+ +++|.++|++||+++|+|++|. +|-.. ..... .+. ..|++ ++.|.++| ++.|++
T Consensus 239 ~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G-~~~a~~~~~~~pdii--t~sK~l~gG~~~lG~v 315 (457)
T 3tfu_A 239 VEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTG-ALFAADHAGVSPDIM--CVGKALTGGYLSLAAT 315 (457)
T ss_dssp ECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEE--EECGGGGTTSSCCEEE
T ss_pred EeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCcccc-chhHhHhcCCCceEE--EEChhhhCCCcceEEE
Confidence 876 44 444443 9999999999999999999975 22111 11000 001 25777 55799977 466999
Q ss_pred EEecchhhhhc
Q 023191 269 FFRKGVKEINK 279 (286)
Q Consensus 269 ~~~~~~~~~~~ 279 (286)
++++++.+...
T Consensus 316 ~~~~~i~~~~~ 326 (457)
T 3tfu_A 316 LCTADVAHTIS 326 (457)
T ss_dssp EEEHHHHHHHH
T ss_pred EEcHHHHHHhh
Confidence 99999887764
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.6e-13 Score=123.06 Aligned_cols=207 Identities=13% Similarity=0.114 Sum_probs=126.4
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
..+++..+.. ..++.+++++.+.+.+....++ ..+++.+++++++++++ ..+ +|++++|
T Consensus 57 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~la~~~~-~~~----~v~~~~s 120 (434)
T 2epj_A 57 RIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGA-----------PGEAEVLLAEKILGYVK-RGG----MIRFVNS 120 (434)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSS-----------CCHHHHHHHHHHHHHHC-TTC----EEEEESS
T ss_pred EEEEcccchhcccCCCCCHHHHHHHHHHHHhCCCCCC-----------CCHHHHHHHHHHHHhCC-CCC----EEEEeCC
Confidence 3467665531 2589999999988865211111 12344456677777774 332 4888888
Q ss_pred hH-HHHHHHHHh--cCCCCeEEeccCCCCcccCccccccccc------ccccee------eeEEEecccCCCCCCCCHHH
Q 023191 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKK------ISAVSI------FFETMPYRLNESTGYIDYDQ 186 (286)
Q Consensus 122 ~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~------~~~~g~------~~~~v~~~~~~~~~~~d~e~ 186 (286)
++ ++.+++++. +.++++|+++++.|.++........... ....|. .+..++ . .|+++
T Consensus 121 gseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~--~------~d~~~ 192 (434)
T 2epj_A 121 GTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTP--Y------NDVEA 192 (434)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEE--T------TCHHH
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecC--C------CCHHH
Confidence 88 888777761 3456788888877766432111000000 000111 122222 1 38999
Q ss_pred HHHHhhh--cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCCCC-CCC-cceEEEeCC
Q 023191 187 LEKSATL--FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-PFE-YADVVTTTT 256 (286)
Q Consensus 187 l~~~i~~--~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~-~~~-~~D~v~~s~ 256 (286)
|++.+++ .++++|+++|.+ +|...+ +++|.++|++||+++|+|++|+ |......... .+. ..|++ |+
T Consensus 193 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~ 269 (434)
T 2epj_A 193 LERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLEGAQGYFNIEGDII--VL 269 (434)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTTHHHHHHTCCCSEE--EE
T ss_pred HHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcchhhHHhCCCCCee--ee
Confidence 9999874 267788877543 566777 9999999999999999999987 4421110000 001 26765 55
Q ss_pred CCCCCC-CCceEEEEecchhhhhcc
Q 023191 257 HKSLRG-PRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 257 ~K~l~g-p~gG~l~~~~~~~~~~~~ 280 (286)
+|+|++ .+.|++++++++.+..+.
T Consensus 270 sK~l~~G~~~G~v~~~~~~~~~l~~ 294 (434)
T 2epj_A 270 GKIIGGGFPVGAVAGSREVMSLLTP 294 (434)
T ss_dssp EGGGGTTSSCEEEEECHHHHTTBTT
T ss_pred cchhcCCcceeeeeecHHHHHhhcc
Confidence 699866 356999999887766654
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-13 Score=121.56 Aligned_cols=206 Identities=13% Similarity=0.062 Sum_probs=122.6
Q ss_pred cCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.+++..+.. ..+|++++++.+.+......++ ...... +++++++++++ ..+ .|++++|
T Consensus 54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~-------~~~~~~----~l~~~la~~~~-~~~----~v~~~~~ 117 (429)
T 3k28_A 54 EYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGA-------PTEIEN----KLAKLVIERVP-SIE----IVRMVNS 117 (429)
T ss_dssp EEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSS-------CCHHHH----HHHHHHHHHST-TCS----EEEEESS
T ss_pred EEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCC-------CCHHHH----HHHHHHHHhCC-CCC----EEEEeCC
Confidence 3466654432 2589999999988765221111 122333 35577777776 343 5888888
Q ss_pred hH-HHHHHHHHhc--CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCC------------CCCHHH
Q 023191 122 SP-SNFQVYTALL--KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG------------YIDYDQ 186 (286)
Q Consensus 122 ~~-a~~~~l~a~~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~------------~~d~e~ 186 (286)
++ ++..++..+. .++++|+++++.|.+....... ..|......+.+.. ... .-|+++
T Consensus 118 Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~-------~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 3k28_A 118 GTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLI-------KAGSGVATLGLPDS-PGVPEGVAKNTITVAYNDLES 189 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCS-------SCCTTC-----CCC-TTCCHHHHTTEEEEETTCHHH
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHH-------hcCCcccccCCCCc-CCCCCcccCceeecCCCCHHH
Confidence 88 8887777664 3778999988777654321110 01100000110000 000 018999
Q ss_pred HHHHhhh--cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCCC-C-CCC-cceEEEeC
Q 023191 187 LEKSATL--FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-S-PFE-YADVVTTT 255 (286)
Q Consensus 187 l~~~i~~--~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~-~~~-~~D~v~~s 255 (286)
+++++++ .++++|++++.| .|...+ +++|.++|++||+++|+|++|. |. ..+... . .+. ..|+++
T Consensus 190 le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~t-- 265 (429)
T 3k28_A 190 VKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMT-GF-RVAYNCGQGYYGVTPDLTC-- 265 (429)
T ss_dssp HHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEEE--
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchHHHHhCCCCceeh--
Confidence 9998874 256777776544 345555 9999999999999999999984 33 211100 0 000 256655
Q ss_pred CCCCCCC-CCceEEEEecchhhhhcc
Q 023191 256 THKSLRG-PRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 256 ~~K~l~g-p~gG~l~~~~~~~~~~~~ 280 (286)
++|+|++ .+.|++++++++.+..++
T Consensus 266 ~sK~~~~G~~iG~~~~~~~~~~~~~~ 291 (429)
T 3k28_A 266 LGKVIGGGLPVGAYGGKAEIMRQVAP 291 (429)
T ss_dssp ECGGGGTTSCCEEEEECHHHHTTBTT
T ss_pred hhhhhcCCCCeEEEEEcHHHHhhhcc
Confidence 5698865 445999999988777654
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=126.58 Aligned_cols=205 Identities=12% Similarity=0.043 Sum_probs=124.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcC--
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLK-- 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~-- 134 (286)
.+|.+++|+.+.+.... ..+.. ..+..+...+++++++++++.+.+ .|++++|++ ++..+++.+..
T Consensus 72 ~~p~v~~A~~~~~~~~~-~~~~~------~~~~~~~~~~lae~l~~~~~~~~~----~v~~~~sGseA~~~aik~a~~~~ 140 (472)
T 3hmu_A 72 GRDELAEVAARQMRELP-YYNTF------FKTTHVPAIALAQKLAELAPGDLN----HVFFAGGGSEANDTNIRMVRTYW 140 (472)
T ss_dssp CCHHHHHHHHHHHHHCS-CCCSS------SSEECHHHHHHHHHHHHHSCTTEE----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ccccc------cccCCHHHHHHHHHHHHhCCCCCC----EEEEeCCHHHHHHHHHHHHHHHH
Confidence 47999999988876521 11111 112234455577888888876553 588888888 88888887753
Q ss_pred ------CCCeEEeccCCCCcccCcccc-----cccccc-ccceeeeEEEeccc--CCCCCCCC--------HHHHHHHhh
Q 023191 135 ------PHDRIMALDLPHGGHLSHGYQ-----TDTKKI-SAVSIFFETMPYRL--NESTGYID--------YDQLEKSAT 192 (286)
Q Consensus 135 ------~Gd~Vl~~~~~~~~~~~~~~~-----~~~~~~-~~~g~~~~~v~~~~--~~~~~~~d--------~e~l~~~i~ 192 (286)
++++|+++++.|.++..-... .++... ...+ +..++.+. +.+++ .| +++|+++++
T Consensus 141 ~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~--~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~ 217 (472)
T 3hmu_A 141 QNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPD--VHHINQPNWWAEGGD-MDPEEFGLARARELEEAIL 217 (472)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSS--EEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCC--cEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHH
Confidence 578999999777665311100 000000 0112 33344222 10112 34 788888886
Q ss_pred h---cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCC-CCC-cceEEEeCCCCCC
Q 023191 193 L---FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPS-PFE-YADVVTTTTHKSL 260 (286)
Q Consensus 193 ~---~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~-~~~-~~D~v~~s~~K~l 260 (286)
+ .++++|+++|.+ .|...+ +++|.++|++||+++|+|++|. +|-.. ..... .+. ..|++++ .|++
T Consensus 218 ~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G-~~~a~~~~~v~pdi~t~--sK~l 294 (472)
T 3hmu_A 218 ELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQTMGIRPHIMTI--AKGL 294 (472)
T ss_dssp HHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSCHHHHHTCCCSEEEE--CGGG
T ss_pred hcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccC-ccchhHHhCCCCceeee--chhh
Confidence 3 256778777544 344554 9999999999999999999986 32221 11000 001 2677765 4998
Q ss_pred CC--CCceEEEEecchhhhhc
Q 023191 261 RG--PRGAMIFFRKGVKEINK 279 (286)
Q Consensus 261 ~g--p~gG~l~~~~~~~~~~~ 279 (286)
+| .+.|++++++++.+..+
T Consensus 295 ~gg~~plG~v~~~~~i~~~~~ 315 (472)
T 3hmu_A 295 SSGYAPIGGSIVCDEVAHVIG 315 (472)
T ss_dssp TTTSSCCEEEEEEHHHHHHHT
T ss_pred hcCCcceEEEEECHHHHHhcc
Confidence 77 45599999999887773
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=124.54 Aligned_cols=208 Identities=15% Similarity=0.064 Sum_probs=126.3
Q ss_pred cCceecCCC--C---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSE--N---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e--~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
..+++..+. + ..++.+++++.+.+.... .+ + +..+++.+++++++++++ +.+ +|++++|
T Consensus 53 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~------~---~~~~~~~~l~~~l~~~~~-~~~----~v~~~~~ 116 (424)
T 2e7u_A 53 RYLDYVMSWGPLILGHAHPKVLARVRETLERGL--TF------G---APSPLEVALAKKVKRAYP-FVD----LVRFVNS 116 (424)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS--CC------S---SCCHHHHHHHHHHHHHCT-TCC----EEEEESS
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhCC--CC------C---CCCHHHHHHHHHHHHhCC-CCC----EEEEeCC
Confidence 346776554 2 358999999998886521 11 1 112445556688888885 443 5888888
Q ss_pred hH-HHHHHHHH--hcCCCCeEEeccCCCCcccCccccccccc------cccceee----eEEEecccCCCCCCCCHHHHH
Q 023191 122 SP-SNFQVYTA--LLKPHDRIMALDLPHGGHLSHGYQTDTKK------ISAVSIF----FETMPYRLNESTGYIDYDQLE 188 (286)
Q Consensus 122 ~~-a~~~~l~a--~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~------~~~~g~~----~~~v~~~~~~~~~~~d~e~l~ 188 (286)
++ ++.++++. .+.+++.|+++++.|.++........... ....|.. ...++++. .|+++|+
T Consensus 117 g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~------~d~~~le 190 (424)
T 2e7u_A 117 GTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY------NDPEGLR 190 (424)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT------TCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC------CCHHHHH
Confidence 87 88777765 23345788888877766432111000000 0011110 01122121 3899999
Q ss_pred HHhhh--cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCCCC-CCC-cceEEEeCCCC
Q 023191 189 KSATL--FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS-PFE-YADVVTTTTHK 258 (286)
Q Consensus 189 ~~i~~--~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~-~~~-~~D~v~~s~~K 258 (286)
+.+++ .++++|+++|.| +|...+ +++|.++ ++||+++|+|++|+ |......... .+. ..|++ |++|
T Consensus 191 ~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK 266 (424)
T 2e7u_A 191 EVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLAFGGATELLGLKPDLV--TLGK 266 (424)
T ss_dssp HHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSSTTHHHHHHTCCCSEE--EECG
T ss_pred HHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccchhHHHHHhCCCcchh--hhhh
Confidence 98873 267777776544 566666 9999999 99999999999987 4421111000 001 25765 6679
Q ss_pred CCCCC-CceEEEEecchhhhhcc
Q 023191 259 SLRGP-RGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 259 ~l~gp-~gG~l~~~~~~~~~~~~ 280 (286)
+|+++ +.|++++++++.+..++
T Consensus 267 ~l~~G~~~G~~~~~~~~~~~~~~ 289 (424)
T 2e7u_A 267 ILGGGLPAAAYAGRREIMEKVAP 289 (424)
T ss_dssp GGGTTSSCEEEEECHHHHTTBTT
T ss_pred hhhCCcceEEEEEcHHHHhhhcc
Confidence 99753 55999999888776654
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-13 Score=122.64 Aligned_cols=210 Identities=10% Similarity=-0.014 Sum_probs=121.5
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc--C
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--K 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--~ 134 (286)
.+|.+++++.+.+.... .+.. ..+..+.+.+++++++++++.+.. .+|++++|++ ++.++++... .
T Consensus 81 ~~p~v~~A~~~~~~~~~--~~~~------~~~~~~~~~~la~~l~~~~~~~~~---~~v~~~~sGseA~~~alk~a~~~~ 149 (453)
T 4ffc_A 81 SHPAVAAAIADQATHFT--HTCF------MVTPYEQYVQVAELLNALTPGDHD---KRTALFNSGAEAVENAIKVARLAT 149 (453)
T ss_dssp TCHHHHHHHHHHHHHCS--CCTT------TTSCCHHHHHHHHHHHHHSSCSSC---EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc--cccc------CcCCCHHHHHHHHHHHHhCCCCCC---cEEEEeCcHHHHHHHHHHHHHHhc
Confidence 48999999988875521 1111 112234555677889999875421 2588888888 8887776553 3
Q ss_pred CCCeEEeccCCCCcccCcccc------ccccccccceeeeEEEecccCC-CCCCCC--------HHHHHHHhhhcCCcEE
Q 023191 135 PHDRIMALDLPHGGHLSHGYQ------TDTKKISAVSIFFETMPYRLNE-STGYID--------YDQLEKSATLFRPKLI 199 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~~~~-~~~~~d--------~e~l~~~i~~~~tk~v 199 (286)
.++.|+++++.|.++...... .++.........+..++++... +.+..+ ++.|++.+.+.++++|
T Consensus 150 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aav 229 (453)
T 4ffc_A 150 GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAI 229 (453)
T ss_dssp CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 568999999887755321100 1111111111123444443211 111222 4566666654345666
Q ss_pred EEcCCC-CC-CccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCC-CC-cceEEEeCCCCCCCC-CCceEEE
Q 023191 200 VAGASA-YA-RLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSP-FE-YADVVTTTTHKSLRG-PRGAMIF 269 (286)
Q Consensus 200 ~i~~~n-~g-~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~-~~-~~D~v~~s~~K~l~g-p~gG~l~ 269 (286)
+++|.| ++ ...+ +++|.++|++||+++|+|++|. +|... ...... +. ..|++++ .|++++ .+.|+++
T Consensus 230 i~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g-~~~a~~~~~~~pdi~t~--sK~~~~G~~~G~~~ 306 (453)
T 4ffc_A 230 IIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEGIVPDIVTM--AKGIAGGMPLSAVT 306 (453)
T ss_dssp EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SSSTHHHHTCCCSEEEE--CGGGGTTSSCEEEE
T ss_pred EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccc-ccchhhhcCCCcchHhh--hhhhcCCcCeEEEE
Confidence 666555 33 4444 9999999999999999999975 22111 110000 00 2566654 598854 3449999
Q ss_pred EecchhhhhccC
Q 023191 270 FRKGVKEINKQG 281 (286)
Q Consensus 270 ~~~~~~~~~~~~ 281 (286)
+++++.+..++.
T Consensus 307 ~~~~i~~~~~~~ 318 (453)
T 4ffc_A 307 GRAELMDAVYAG 318 (453)
T ss_dssp EEHHHHTTSCTT
T ss_pred ECHHHHhhhccc
Confidence 999887766543
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-12 Score=118.05 Aligned_cols=210 Identities=10% Similarity=0.033 Sum_probs=120.6
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc--C
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--K 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--~ 134 (286)
.+|.+++++.+.+.... .+.. ..+..+.+.+++++++++++.+.. ..|++++|++ ++.++++... .
T Consensus 78 ~~p~v~~A~~~~~~~~~--~~~~------~~~~~~~~~~la~~l~~~~~~~~~---~~v~~~~sGseA~~~Alk~a~~~~ 146 (451)
T 3oks_A 78 SAPKVVEAVRSQVGDFT--HTCF------MVTPYEGYVAVCEQLNRLTPVRGD---KRSALFNSGSEAVENAVKIARSHT 146 (451)
T ss_dssp TCHHHHHHHHHHHTTCS--CCTT------TTSCCHHHHHHHHHHHHHSSCCSS---EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc--cccC------CccCCHHHHHHHHHHHHhCCcCCC---CEEEEeCcHHHHHHHHHHHHHHhc
Confidence 48999999988875521 1111 112234555677889988875421 2588888888 8887776664 3
Q ss_pred CCCeEEeccCCCCcccCcccc------ccccccccceeeeEEEeccc---------CCCC-CCCCHHHHHHHhh----hc
Q 023191 135 PHDRIMALDLPHGGHLSHGYQ------TDTKKISAVSIFFETMPYRL---------NEST-GYIDYDQLEKSAT----LF 194 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~~---------~~~~-~~~d~e~l~~~i~----~~ 194 (286)
.++.|+++++.|.+....... .++.........+..++++. +.+. ..-+++.+++.+. ..
T Consensus 147 g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (451)
T 3oks_A 147 HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGAD 226 (451)
T ss_dssp CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGG
T ss_pred CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCC
Confidence 558899998877765421100 11111111111234454331 1000 0113454545443 23
Q ss_pred CCcEEEEcCCC-CC-CccC----HHHHHHHHHhcCCEEEEeccccccccccCC-CC-CCCC-cceEEEeCCCCCCCC-CC
Q 023191 195 RPKLIVAGASA-YA-RLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGV-IP-SPFE-YADVVTTTTHKSLRG-PR 264 (286)
Q Consensus 195 ~tk~v~i~~~n-~g-~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~-~~~~-~~D~v~~s~~K~l~g-p~ 264 (286)
++++|++.|.| ++ ...+ +++|.++|++||+++|+|++|. |....+. .. ..+. ..|++ +++|+|++ .+
T Consensus 227 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ 303 (451)
T 3oks_A 227 NLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-GFARTGAMFACEHEGIDPDLI--VTAKGIAGGLP 303 (451)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSS
T ss_pred CEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCccccchhhhhcCCCCCee--eehhhhhCCcc
Confidence 56677776544 33 4444 9999999999999999999986 2211111 00 0001 25776 45699855 34
Q ss_pred ceEEEEecchhhhhccC
Q 023191 265 GAMIFFRKGVKEINKQG 281 (286)
Q Consensus 265 gG~l~~~~~~~~~~~~~ 281 (286)
.|++++++++.+..+++
T Consensus 304 iG~v~~~~~~~~~~~~~ 320 (451)
T 3oks_A 304 LSAVTGRAEIMDSPHVS 320 (451)
T ss_dssp CEEEEEEHHHHTCSCTT
T ss_pred eEEEEECHHHHhhhcCC
Confidence 49999999887766543
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-13 Score=122.29 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=117.1
Q ss_pred CCHHHH-H-Hhcc---ccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCC-CCCCCcceeEEeCCChH-HHHHHHH
Q 023191 58 TSVSVM-Q-AVGS---VMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR-LDPEKWGVNVQSLSGSP-SNFQVYT 130 (286)
Q Consensus 58 ~~~~v~-~-a~~~---~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g-~~~~~~~~~v~~~sG~~-a~~~~l~ 130 (286)
.+|.++ + ++.+ .+.... .+. . .| ..+...++++.++++++ .+.+ +|++++|++ ++.+++.
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~~~--~~~-~-~~-----~~~~~~~la~~la~~~~~~~~~----~v~~~~~gseA~~~aik 137 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAALNK--PSN-S-DV-----YSVAMARFVETFARVLGDPALP----HLFFVEGGALAVENALK 137 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHTCC--CCT-T-TC-----CCHHHHHHHHHHHHHHCCTTCC----EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcC--CCC-c-cc-----CCHHHHHHHHHHHHhcCCCCCC----EEEEeCchHHHHHHHHH
Confidence 489999 8 8888 554421 111 1 11 12333445577777776 3443 599988888 8877765
Q ss_pred Hhc---C----------C-CCeEEeccCCCCcccCcccccc------ccccccceeeeEEEecccCCC-CC--------C
Q 023191 131 ALL---K----------P-HDRIMALDLPHGGHLSHGYQTD------TKKISAVSIFFETMPYRLNES-TG--------Y 181 (286)
Q Consensus 131 a~~---~----------~-Gd~Vl~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~v~~~~~~~-~~--------~ 181 (286)
... . + ||+|+++++.|.++........ +.+..-....+..+| .+.. .. .
T Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~ 215 (449)
T 2cjg_A 138 AAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAP--YMRPGLDEPAMAALEA 215 (449)
T ss_dssp HHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCC--CCCTTCCHHHHHHHHH
T ss_pred HHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEc--CCCchhhccccchhhH
Confidence 432 2 2 8999999988876643221111 111100111122232 3210 11 2
Q ss_pred CCHHHHHHHhhh--cCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCC-CC-cce
Q 023191 182 IDYDQLEKSATL--FRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSP-FE-YAD 250 (286)
Q Consensus 182 ~d~e~l~~~i~~--~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~-~~-~~D 250 (286)
.|+++|++.+++ .++++|++++.| +|...+ +++|.++|++||+++|+|++|. +|... ...... +. ..|
T Consensus 216 ~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~~~~~~~~~~~d 294 (449)
T 2cjg_A 216 EALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPD 294 (449)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SSSTHHHHTCCCS
T ss_pred HHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccC-cceeecccCCCce
Confidence 466779988862 267888887543 465555 9999999999999999999987 32221 111000 01 257
Q ss_pred EEEeCCCCCCCCCCceEEEEecchhhh
Q 023191 251 VVTTTTHKSLRGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 251 ~v~~s~~K~l~gp~gG~l~~~~~~~~~ 277 (286)
+++ ++|+| | .|++++++++.+.
T Consensus 295 i~t--~sK~l--~-iG~~~~~~~~~~~ 316 (449)
T 2cjg_A 295 IVA--FGKKT--Q-VCGVMAGRRVDEV 316 (449)
T ss_dssp EEE--ECGGG--S-SEEEEECGGGGGS
T ss_pred EEE--ecCcc--c-EEEEEECHHHhhh
Confidence 765 45998 3 5778888887764
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.9e-11 Score=108.89 Aligned_cols=202 Identities=13% Similarity=0.139 Sum_probs=114.1
Q ss_pred CCHHHHHHhccccccC-CCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc--
Q 023191 58 TSVSVMQAVGSVMTNK-YSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL-- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~-- 133 (286)
.+|++++++.+.+... +..+ . .++. ....++++.+.+++.++++...+ .|++++|++ |+.++++...
T Consensus 80 ~~p~v~~A~~~~~~~~~~~~~--~--~~~~-~~~~~l~~~la~~l~~~~~~~~~----~v~f~~sGseA~~~Aik~a~~~ 150 (472)
T 1ohv_A 80 SHPALVKLVQQPQNVSTFINR--P--ALGI-LPPENFVEKLRESLLSVAPKGMS----QLITMACGSCSNENAFKTIFMW 150 (472)
T ss_dssp TCHHHHHHHHCGGGHHHHHCC--C--CTTT-SCBTTHHHHHHHTGGGGCCTTCC----EEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccccc--c--cccc-ccHHHHHHHHHHHHHHhCCCCcC----EEEEeCCchhHHHHHHHHHHHH
Confidence 4899999998876421 1001 0 1121 22346666666767777654443 488877777 8887777663
Q ss_pred ------C-----------------CC---CeEEeccCCCCcccCccccccc-cccccceee---eEEEecccCC-C---C
Q 023191 134 ------K-----------------PH---DRIMALDLPHGGHLSHGYQTDT-KKISAVSIF---FETMPYRLNE-S---T 179 (286)
Q Consensus 134 ------~-----------------~G---d~Vl~~~~~~~~~~~~~~~~~~-~~~~~~g~~---~~~v~~~~~~-~---~ 179 (286)
. || ++|++++..|.++......+-. ......+.. +..++++... . .
T Consensus 151 ~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (472)
T 1ohv_A 151 YRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEF 230 (472)
T ss_dssp HHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGC
T ss_pred hhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccc
Confidence 1 56 8999999777765321110000 000000000 0112221100 0 0
Q ss_pred --C-----CCCHHHHHHHhhhc-----CCcEEEEcC--CCCCCccC----HHHHHHHHHhcCCEEEEecccc-cccccc-
Q 023191 180 --G-----YIDYDQLEKSATLF-----RPKLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAA- 239 (286)
Q Consensus 180 --~-----~~d~e~l~~~i~~~-----~tk~v~i~~--~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~- 239 (286)
+ ..|+++|+++++++ ++++|++.+ +++|...+ +++|.++|++||+++|+|++|. +|....
T Consensus 231 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~ 310 (472)
T 1ohv_A 231 VKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKF 310 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCc
Confidence 0 23688999988753 688888863 33676666 9999999999999999999987 332211
Q ss_pred -CCCCCCCC-cceEEEeCCCCC-CCCCCceEEEEecch
Q 023191 240 -GVIPSPFE-YADVVTTTTHKS-LRGPRGAMIFFRKGV 274 (286)
Q Consensus 240 -~~~~~~~~-~~D~v~~s~~K~-l~gp~gG~l~~~~~~ 274 (286)
.....++. ..|++++ .|+ ++ ||+++ ++++
T Consensus 311 ~~~~~~gv~~~~Di~t~--sK~~l~---GG~~~-~~~~ 342 (472)
T 1ohv_A 311 WAHEHWGLDDPADVMTF--SKKMMT---GGFFH-KEEF 342 (472)
T ss_dssp SGGGGGCCSSCCSEEEE--CGGGSS---EEEEE-CGGG
T ss_pred hhccccCCCCCCCEEEE--cccccc---CCccC-chhh
Confidence 11111111 1677654 498 44 47766 5554
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-12 Score=119.68 Aligned_cols=204 Identities=12% Similarity=0.053 Sum_probs=122.4
Q ss_pred cCceecCCCCC-----CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCC
Q 023191 47 KGLELIPSENF-----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSG 121 (286)
Q Consensus 47 ~~i~L~~~e~~-----~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG 121 (286)
+.|++..+..+ .+|.|++++.+.+......++ ..+...++.+.++++++ ..+ .++++++
T Consensus 101 ~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~-----------~~~~~~~Lae~L~~~~p-~~~----~v~~~nS 164 (465)
T 2yky_A 101 AYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLST-----------QTENEALFAEAVCDRFP-SID----LVRFTNS 164 (465)
Confidence 45666655542 378899999887755211111 12333345577777774 232 2666665
Q ss_pred hH-HHHHHHHHh--cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh--cCC
Q 023191 122 SP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL--FRP 196 (286)
Q Consensus 122 ~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~--~~t 196 (286)
++ |+..+++.. ...+++|++++..|.++..... . +....|.....++++. .|+++|++++++ .++
T Consensus 165 GseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~---s-g~~~~g~~~~~~~~~~------~d~~~l~~~l~~~~~~~ 234 (465)
T 2yky_A 165 GTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA---S-GHAPTNAPYHVVLGVY------NDVEGTADLLKRHGHDC 234 (465)
Confidence 55 888777654 3466999999977765432111 0 0001121001122221 378899998873 378
Q ss_pred cEEEEcC--CCCCCccC----HHHHHHHHHhcCCEEEEeccccccccccCCCCCC-CC-cceEEEeCCCCCCCCC-CceE
Q 023191 197 KLIVAGA--SAYARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-FE-YADVVTTTTHKSLRGP-RGAM 267 (286)
Q Consensus 197 k~v~i~~--~n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~-~~-~~D~v~~s~~K~l~gp-~gG~ 267 (286)
++|++.+ +|+|...+ +++|.++|++||+++|+|++|. + ......... +. ..|++ +++|++++. +.|+
T Consensus 235 aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~ 310 (465)
T 2yky_A 235 AAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLT--TLGKYIGGGMSFGA 310 (465)
Confidence 8988863 34665554 9999999999999999999988 4 211110000 01 25654 678999763 3499
Q ss_pred EEEecchhhhhcc
Q 023191 268 IFFRKGVKEINKQ 280 (286)
Q Consensus 268 l~~~~~~~~~~~~ 280 (286)
+++++++.+....
T Consensus 311 v~~~~~i~~~l~~ 323 (465)
T 2yky_A 311 FGGRRDLMERFDP 323 (465)
Confidence 9999988876654
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.3e-09 Score=97.22 Aligned_cols=192 Identities=14% Similarity=0.092 Sum_probs=112.5
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh--cCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LKP 135 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~--~~~ 135 (286)
.|+|++|+.+.+......+ ..+....+ +.+.+++.+.- .+ .|.++++.+ |+..+++.. ...
T Consensus 105 hp~v~~Av~~q~~~~~~~~-------~~~~~~~~----lae~l~~~~p~-~~----~v~f~~SGsEA~e~AiklAr~~tg 168 (454)
T 4ao9_A 105 APEIRDAVIEAMQGGINLT-------GHNLLEGR----LARLICERFPQ-IE----QLRFTNSGTEANLMALTAALHFTG 168 (454)
T ss_dssp CHHHHHHHHHHHHTCSCCC-------SEESSHHH----HHHHHHHHSTT-CS----EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCCcc-------CCcHHHHH----HHHHHHHhCCC-CC----EEEEeCchHHHHHHHHHHHHhccc
Confidence 6999999988876532111 11122223 44667777642 22 377765555 888766654 234
Q ss_pred CCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc--CCCCCCccC
Q 023191 136 HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG--ASAYARLYD 211 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~--~~n~g~~~~ 211 (286)
.++|+.+...|.+...... . .............+ +. -|++.+++.+.++ ++.+|++. ..+.|.+.|
T Consensus 169 r~~ii~~~~~yHG~t~~~~-~-~~~~~~~~~~~~~~--p~------nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p 238 (454)
T 4ao9_A 169 RRKIVVFSGGYHGGVLGFG-A-RPSPTTVPFDFLVL--PY------NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPG 238 (454)
T ss_dssp CCEEEEETTCBCSTTCBBS-S-SBCTTSCCSEEEEE--CT------TCHHHHHHHHHHTGGGEEEEEECSEESTTTCEEC
T ss_pred CCeEEEEeCCcCCcccccc-c-cccCccCCCCcccC--CC------chHHHHHHHHhhcCCceEEEEeccccCCCCccCC
Confidence 5778888766665432111 0 00000011112222 22 2789999988753 46778876 344555544
Q ss_pred ----HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-cceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 212 ----YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 212 ----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+++|.++|++||+++|+|++|. |-.........+. ..|+++ +.|.++|... |++.+++++.+...
T Consensus 239 ~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t--~gK~lggG~Piga~~~~~ei~~~~~ 309 (454)
T 4ao9_A 239 QPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTT--LGKYIGGGMSFGAFGGRADVMALFD 309 (454)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEE--EEGGGGTTSSCEEEEECHHHHGGGC
T ss_pred chhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEE--eccccCCCCcceeeeeHHHHHHHHh
Confidence 9999999999999999999986 4222111000000 158775 4587766544 88999998887765
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-06 Score=79.92 Aligned_cols=209 Identities=11% Similarity=0.017 Sum_probs=110.2
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~a~~~~l~a~--~~ 134 (286)
-.|++.+|+.+.+.... .. . .++...+. ..++.+++.++...+.- ..++++ ||+.|+..+++.. ..
T Consensus 81 ~~p~v~~Ai~~q~~~~~-~~--~-~~~~~~~~----~~~lae~L~~~~p~~~~---~~v~f~~sGsEA~e~AlklAr~~t 149 (456)
T 4atq_A 81 SDPAVVAAVQEAAAHFT-HT--C-FMVTPYEG----YVAVTEQLNRLTPGDHA---KRTVLFNSGAEAVENAVKVARLAT 149 (456)
T ss_dssp TCHHHHHHHHHHHHHCS-CC--T-TTTSCCHH----HHHHHHHHHHHSSCSSC---EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcc-Cc--c-cCccCcHH----HHHHHHHHHHhCCCCCC---cEEEEeCChHHHHHHHHHHHhhhh
Confidence 36899999987665421 11 0 01111122 22355777777754321 235554 5555887666533 34
Q ss_pred CCCeEEeccCCCCcccCcccc------ccccccccceeeeEEEeccc--CCCC-CCCCHHHHHHHh-------hhcCCcE
Q 023191 135 PHDRIMALDLPHGGHLSHGYQ------TDTKKISAVSIFFETMPYRL--NEST-GYIDYDQLEKSA-------TLFRPKL 198 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~v~~~~--~~~~-~~~d~e~l~~~i-------~~~~tk~ 198 (286)
...+|+.....|.+...-... .++....-....+..+|++. .... ...+.+.+++.+ ...++.+
T Consensus 150 ~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAA 229 (456)
T 4atq_A 150 GRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAA 229 (456)
T ss_dssp CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEE
T ss_pred cCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEE
Confidence 567888888777665310000 01111111111133344321 1111 122333333332 2335778
Q ss_pred EEEcCC--CCCCc----cCHHHHHHHHHhcCCEEEEeccccc-cccccCC--CCCCCCcceEEEeCCCCCCCCCCc-eEE
Q 023191 199 IVAGAS--AYARL----YDYERIRKVCNKQKAIMLADMAHIS-GLVAAGV--IPSPFEYADVVTTTTHKSLRGPRG-AMI 268 (286)
Q Consensus 199 v~i~~~--n~g~~----~~l~~I~~ia~~~~~~vivD~a~~~-g~~~~~~--~~~~~~~~D~v~~s~~K~l~gp~g-G~l 268 (286)
|++.|- +-|.. .-+++|.++|++||+++|.|+++.. |-..... ....+ ..|+++++ |.++|... |.+
T Consensus 230 vivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~g--K~lggg~P~~av 306 (456)
T 4atq_A 230 IIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV-VPDIITMA--KGIAGGLPLSAI 306 (456)
T ss_dssp EEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTSSCEEE
T ss_pred EEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCC-CCchhhhh--hcccCcCCceee
Confidence 888632 23422 2399999999999999999999863 2221111 11111 27988775 87766544 888
Q ss_pred EEecchhhhhcc
Q 023191 269 FFRKGVKEINKQ 280 (286)
Q Consensus 269 ~~~~~~~~~~~~ 280 (286)
++++++.+..+.
T Consensus 307 ~~~~~i~~~~~~ 318 (456)
T 4atq_A 307 TGRADLLDAVHP 318 (456)
T ss_dssp EEEHHHHTTSCT
T ss_pred EecHHHHhcccc
Confidence 999887766553
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=97.96 E-value=7.8e-05 Score=68.61 Aligned_cols=205 Identities=12% Similarity=0.097 Sum_probs=105.5
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~--- 133 (286)
-.|++.+|+.+.+..... + ..+++. .. +.+.++.+++.+....+.+ .|.++++.+ |+..+++...
T Consensus 84 ~~p~v~~Ai~~q~~~l~~--~--~~~~~~-~~--~~~~~lAe~L~~~~p~~~~----~v~f~~sGsEA~e~AiKlAr~~~ 152 (473)
T 4e3q_A 84 DHKGLIDAAKAQYERFPG--Y--HAFFGR-MS--DQTVMLSEKLVEVSPFDSG----RVFYTNSGSEANDTMVKMLWFLH 152 (473)
T ss_dssp CCHHHHHHHHHHHHHCCC--C--CCCTTE-EE--HHHHHHHHHHHHHSSCSSC----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--c--cccccc-cC--HHHHHHHHHHHhhCCCCcc----EEEEeCchHHHHHHHHHHHHHHH
Confidence 379999999887755210 0 011111 11 2222366888888765543 377766555 8877665431
Q ss_pred ----CCC-CeEEeccCCCCcccCccc----ccccc--ccccceeeeEEEeccc--C-CCCCCC-------CHHHHHHHhh
Q 023191 134 ----KPH-DRIMALDLPHGGHLSHGY----QTDTK--KISAVSIFFETMPYRL--N-ESTGYI-------DYDQLEKSAT 192 (286)
Q Consensus 134 ----~~G-d~Vl~~~~~~~~~~~~~~----~~~~~--~~~~~g~~~~~v~~~~--~-~~~~~~-------d~e~l~~~i~ 192 (286)
.++ .+|+.....|.+...-.. ..+.. ..-+.+ ...++.+. . ...... ..+++++.+.
T Consensus 153 ~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 230 (473)
T 4e3q_A 153 AAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPG--FVHLTCPHYWRYGEEGETEEQFVARLARELEETIQ 230 (473)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTT--EEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCc--ccccCCCcccccccccchhhHHHHHHHHHHHHHHH
Confidence 233 467777766665421000 00000 001111 11222110 0 011111 1244555554
Q ss_pred h---cCCcEEEEcCCC--CCCc----cCHHHHHHHHHhcCCEEEEeccccc-cccccCC--CCCCCCcceEEEeCCCCCC
Q 023191 193 L---FRPKLIVAGASA--YARL----YDYERIRKVCNKQKAIMLADMAHIS-GLVAAGV--IPSPFEYADVVTTTTHKSL 260 (286)
Q Consensus 193 ~---~~tk~v~i~~~n--~g~~----~~l~~I~~ia~~~~~~vivD~a~~~-g~~~~~~--~~~~~~~~D~v~~s~~K~l 260 (286)
. .++.+|++.|-. -|.+ .-+++|.++|++||+++|.||++.. |-..... ....+ ..|++++ .|.+
T Consensus 231 ~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDi~t~--~K~l 307 (473)
T 4e3q_A 231 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF-TPDAIIS--SKNL 307 (473)
T ss_dssp HHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTC-CCSEEEE--CGGG
T ss_pred hhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCC-CCChHHh--cccc
Confidence 3 245677776322 3322 2399999999999999999999762 2111100 00110 2688765 5888
Q ss_pred CCC--CceEEEEecchhhhh
Q 023191 261 RGP--RGAMIFFRKGVKEIN 278 (286)
Q Consensus 261 ~gp--~gG~l~~~~~~~~~~ 278 (286)
+|. +-|++++++++.+..
T Consensus 308 ~gG~~Pl~av~~~~~i~~~~ 327 (473)
T 4e3q_A 308 TAGFFPMGAVILGPELSKRL 327 (473)
T ss_dssp GTTSSCCEEEEECHHHHHHH
T ss_pred cCCCCCcccccccHHHHHHh
Confidence 654 348888988876544
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=5.5e-05 Score=74.32 Aligned_cols=94 Identities=12% Similarity=-0.001 Sum_probs=60.1
Q ss_pred HHHHHHhhh-------cCCcEEEEcCC--CCC-CccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCC--CCCCC
Q 023191 185 DQLEKSATL-------FRPKLIVAGAS--AYA-RLYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVI--PSPFE 247 (286)
Q Consensus 185 e~l~~~i~~-------~~tk~v~i~~~--n~g-~~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~--~~~~~ 247 (286)
++|++.+.+ .++.+|++.|. +.| ...+ +++|.++|++||+++|+|++|. +|-...... ..++
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv- 655 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGC- 655 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSS-
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCC-
Confidence 567777652 24677877753 443 3322 8999999999999999999975 222211110 0010
Q ss_pred cceEEEeCCCCCCCCC--CceEEEEecchhhhhccC
Q 023191 248 YADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQG 281 (286)
Q Consensus 248 ~~D~v~~s~~K~l~gp--~gG~l~~~~~~~~~~~~~ 281 (286)
..|++ ++.|.++|. +-|++++++++.+....+
T Consensus 656 ~PDii--tlsK~L~gG~~Plgav~~~~~i~~~~~~~ 689 (831)
T 4a0g_A 656 KPDIA--CFAKLLTGGMVPLAVTLATDAVFDSFSGD 689 (831)
T ss_dssp CCSEE--EECGGGGTTSSCCEEEEECHHHHHTTCSS
T ss_pred CCcEE--EEecccccCccCcEEEEECHHHHHHHhcc
Confidence 25776 477999774 339999999988777643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 286 | ||||
| d1rv3a_ | 470 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Rab | 1e-110 | |
| d2a7va1 | 463 | c.67.1.4 (A:26-488) Serine hydroxymethyltransferas | 1e-103 | |
| d1kl1a_ | 405 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Bac | 6e-93 | |
| d1dfoa_ | 416 | c.67.1.4 (A:) Serine hydroxymethyltransferase {Esc | 1e-91 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 9e-25 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 6e-24 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 7e-17 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 1e-14 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 2e-04 |
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 470 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 323 bits (830), Expect = e-110
Identities = 167/268 (62%), Positives = 210/268 (78%), Gaps = 1/268 (0%)
Query: 18 TWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEG 77
+ + L PL+ D E+ DII+ E RQ GLELI SENF S +V++A+GS + NKYS G
Sbjct: 3 SHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLG 62
Query: 78 YPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137
YPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WGVNVQ SGSP+NF VYTAL++PH
Sbjct: 63 YPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHG 122
Query: 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 197
RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYIDYD+LE++A LF PK
Sbjct: 123 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPK 182
Query: 198 LIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH 257
LI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+PSPFE+ VVTTTTH
Sbjct: 183 LIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTH 242
Query: 258 KSLRGPRGAMIFFRKGVKEIN-KQGKEV 284
K+LRG R MIF+R+GV+ ++ K GKE+
Sbjct: 243 KTLRGCRAGMIFYRRGVRSVDPKTGKEI 270
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 463 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Score = 306 bits (784), Expect = e-103
Identities = 168/260 (64%), Positives = 207/260 (79%)
Query: 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 83
L DPE+ ++++ EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RY
Sbjct: 5 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRY 64
Query: 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALD 143
YGG E +D E LCQ+RALEAF LDP +WGVNVQ SGSP+N VYTALL+PHDRIM LD
Sbjct: 65 YGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLD 124
Query: 144 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA 203
LP GGHL+HGY +D K+ISA SIFFE+MPY+LN TG IDY+QL +A LFRP+LI+AG
Sbjct: 125 LPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT 184
Query: 204 SAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 263
SAYARL DY R+R+VC++ KA +LADMAHISGLVAA VIPSPF++AD+VTTTTHK+LRG
Sbjct: 185 SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 244
Query: 264 RGAMIFFRKGVKEINKQGKE 283
R +IF+RKGVK ++ +
Sbjct: 245 RSGLIFYRKGVKAVDPKTGR 264
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 278 bits (712), Expect = 6e-93
Identities = 116/254 (45%), Positives = 165/254 (64%), Gaps = 10/254 (3%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
L DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
EY+D+ E L ++RA + F + Q SG+ +N VY +L+ D ++ ++L H
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANV----QPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 206
GGHL+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY
Sbjct: 120 GGHLTHG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAY 174
Query: 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266
R+ D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG
Sbjct: 175 PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGG 234
Query: 267 MIFFRKGV-KEINK 279
MI ++ K+I+K
Sbjct: 235 MILCQEQFAKQIDK 248
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} Length = 416 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Score = 275 bits (705), Expect = 1e-91
Identities = 121/254 (47%), Positives = 167/254 (65%), Gaps = 10/254 (3%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
+ D E+ +E EK RQ + +ELI SEN+TS VMQA GS +TNKY+EGYPG RYYGG
Sbjct: 7 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGG 66
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPH 146
EY+D+ E L RA E F D NVQ SGS +NF VYTALL+P D ++ ++L H
Sbjct: 67 CEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAH 122
Query: 147 GGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAY 206
GGHL+HG ++ + +PY ++ TG+IDY LEK A +PK+I+ G SAY
Sbjct: 123 GGHLTHG-----SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAY 176
Query: 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGA 266
+ + D+ ++R++ + A + DMAH++GLVAAGV P+P +A VVTTTTHK+L GPRG
Sbjct: 177 SGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGG 236
Query: 267 MIFFRKGVKEINKQ 280
+I + G +E+ K+
Sbjct: 237 LILAKGGSEELYKK 250
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 100 bits (250), Expect = 9e-25
Identities = 31/264 (11%), Positives = 68/264 (25%), Gaps = 40/264 (15%)
Query: 46 WKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEY-IDMAESL-------- 96
+K L+ S G K+ G ++G + D+ +
Sbjct: 4 FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63
Query: 97 -------CQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGH 149
+K A + D S +N V +AL+ D ++ H
Sbjct: 64 HEGPAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSV 119
Query: 150 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK----------LI 199
+ + + + D ++ + A P+ +
Sbjct: 120 YNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAV 179
Query: 200 VAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP----------SPFEYA 249
+ + +Y+ + K + D A + ++ P +
Sbjct: 180 IQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPG 239
Query: 250 DVVTTTTHKSLRGPRGAMIFFRKG 273
+V + HK G +K
Sbjct: 240 IIVVQSVHKQQAGFSQTSQIHKKD 263
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 98.5 bits (244), Expect = 6e-24
Identities = 30/240 (12%), Positives = 69/240 (28%), Gaps = 44/240 (18%)
Query: 67 GSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVN--VQSLSGSPS 124
G+V + + G + G+ E+ + +G + + G +
Sbjct: 53 GAVTQSMQAAMMRGDEAFSGSRSYYALA--------ESVK---NIFGYQYTIPTHQGRGA 101
Query: 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS--------IFFETMPYRLN 176
L+K ++ LD S+ + T+ S ++ I
Sbjct: 102 EQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRY 161
Query: 177 ESTGYIDYDQLEKSATLFRPKLIV---------AGASAYARLYDYERIRKVCNKQKAIML 227
+ G D + LE+ P + + L + + + + K ++
Sbjct: 162 DFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVV 221
Query: 228 ADMAHISGLVAAGVIPSP--------------FEYADVVTTTTHKSLRGPRGAMIFFRKG 273
D A + ++YAD++ + K P G ++ +
Sbjct: 222 MDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDD 281
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 78.1 bits (191), Expect = 7e-17
Identities = 34/262 (12%), Positives = 72/262 (27%), Gaps = 45/262 (17%)
Query: 51 LIPSEN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR 106
L+PS + S A+ ++ G Y G+ + +A E F
Sbjct: 37 LLPSSAVYIDLLTDSGTNAMSDHQ---WAAMITGDEAYAGSRNYYDLK----DKAKELFN 89
Query: 107 LDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166
D + + G + ++ LLK + P H T
Sbjct: 90 YD-----YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCK 144
Query: 167 FFETM------PYRLNESTGYIDYDQLEKSATLFRPKLI---------VAGASAYARLYD 211
+ ++ G D +L+++ I + + +
Sbjct: 145 AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSN 204
Query: 212 YERIRKVCNKQKAIMLADMAHISGLVAAG--------------VIPSPFEYADVVTTTTH 257
+ + ++ + ++ D A VI ++YAD +T +
Sbjct: 205 LKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAK 264
Query: 258 KSLRGPRGAMIFFRKGVKEINK 279
K G ++ R +
Sbjct: 265 KDPLLNIGGLVAIRDNEEIFTL 286
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 71.4 bits (174), Expect = 1e-14
Identities = 29/254 (11%), Positives = 62/254 (24%), Gaps = 51/254 (20%)
Query: 51 LIPSEN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFR 106
L+ S++ + S A+ ++ G Y G+E E + +
Sbjct: 37 LLNSKDIYIDLLTDSGTNAMSDKQ---WAGMMIGDEAYAGSENFYHLE--------KTVK 85
Query: 107 LDPEKWGVN--VQSLSGSPSNFQVYTALLKPHDRIMA---LDLPHGGHLSHGYQTDTKKI 161
E +G V + G + + +KP + +G
Sbjct: 86 ---ELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNG-----ATF 137
Query: 162 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI---------VAGASAYARLYDY 212
+ G ID ++L + I + +
Sbjct: 138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANM 197
Query: 213 ERIRKVCNKQKAIMLADMAHIS--------------GLVAAGVIPSPFEYADVVTTTTHK 258
+ ++ + + D + ++ F YAD T + K
Sbjct: 198 RAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK 257
Query: 259 SLRGPRGAMIFFRK 272
G +
Sbjct: 258 DCLVNIGGFLCMND 271
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 27/229 (11%), Positives = 58/229 (25%), Gaps = 20/229 (8%)
Query: 65 AVGSVMTNKYSEGYPGARYYGGNEYIDMA------ESLCQKRALEAFRLDPEKWGVNVQS 118
+ R + A +L K F+
Sbjct: 77 YSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATP 136
Query: 119 LSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178
+S S +A K + + + + SH +++ + L+
Sbjct: 137 ISTGMSISLCLSAARKKYGSNVVI----YPYASHKSPIKAVSFVGMNMRL--VETVLDGD 190
Query: 179 TGYIDYDQLEKSATLFRPK------LIVAGASAYARLYDYERIRKVCNKQKAIMLADMAH 232
Y+ + +E + L D I K+C + + A+
Sbjct: 191 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 250
Query: 233 ISGLVAAGVIPSPF--EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279
D V +++ K+L P G + + + I +
Sbjct: 251 AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKE 299
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 286 | |||
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 100.0 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 100.0 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 100.0 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.94 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.93 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.93 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.93 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.92 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.92 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.91 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.9 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.89 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.89 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.89 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.89 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.89 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.88 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.87 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.87 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.86 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.86 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.85 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.85 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.85 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.84 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.83 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.83 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.81 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.81 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.81 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.8 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.8 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.8 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.8 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.79 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.78 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.76 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.76 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.74 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.74 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.74 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.74 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.74 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.73 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.73 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.72 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.72 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.72 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.71 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.7 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.7 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.68 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.68 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.67 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.66 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.65 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.64 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.64 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.61 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.61 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.59 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.58 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.54 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.52 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.52 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.48 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.48 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.48 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.47 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.44 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.44 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.43 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.4 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.34 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.19 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.95 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 98.68 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 98.59 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 98.48 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.46 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.3 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 98.29 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.09 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 97.9 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 97.28 |
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=6.9e-45 Score=325.81 Aligned_cols=256 Identities=66% Similarity=1.102 Sum_probs=203.6
Q ss_pred cccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (286)
++.++..+|++++.+.+|..++...|+|+++||++|+.|++++...+.++|.+|||+.++|++++.++++|..+.++.++
T Consensus 5 ~~~L~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~ 84 (463)
T d2a7va1 5 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 84 (463)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHH
T ss_pred cCchhhhCHHHHHHHHHHHHHHhcCeeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCC
Q 023191 104 AFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYID 183 (286)
Q Consensus 104 ~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d 183 (286)
+|++++..|+++|...||+.|+++++.++++|||+|+..++.+++|++.++......+.+.|..+..++++++++++.+|
T Consensus 85 lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~ID 164 (463)
T d2a7va1 85 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID 164 (463)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBC
T ss_pred HhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCc
Confidence 99999999999999999999999999999999999999999999999888654444556677778888888888889999
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCC
Q 023191 184 YDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 263 (286)
Q Consensus 184 ~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp 263 (286)
++++++.+.+++||+|+++.|+++...|++++.+||++.|+++++|.+|.+|++..+.+++|++++|++++|+||+|.||
T Consensus 165 yd~~~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrGP 244 (463)
T d2a7va1 165 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 244 (463)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC
T ss_pred HHHHHHHHhhcCCceEEecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecchhhhhc
Q 023191 264 RGAMIFFRKGVKEINK 279 (286)
Q Consensus 264 ~gG~l~~~~~~~~~~~ 279 (286)
+||+|+++++....+.
T Consensus 245 rgGiIl~~~~~~~~~~ 260 (463)
T d2a7va1 245 RSGLIFYRKGVKAVDP 260 (463)
T ss_dssp SCEEEEEECSEEEEET
T ss_pred CceEEEEccccccccc
Confidence 9999999997654443
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=100.00 E-value=1.8e-44 Score=324.03 Aligned_cols=259 Identities=63% Similarity=1.056 Sum_probs=242.1
Q ss_pred hhhccccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 20 PKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
.+++++.++..+|++++.+.+|..++...|+|+++||++|+.|++++...+.++|.+|||+.++|++++.++++|..+.+
T Consensus 5 ~~~~~~~l~~~D~ei~~~i~~e~~rq~~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ 84 (470)
T d1rv3a_ 5 EQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQK 84 (470)
T ss_dssp HHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHH
T ss_pred HHHHhhhHhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCC
Q 023191 100 RALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST 179 (286)
Q Consensus 100 ~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 179 (286)
+.+++||++++.|.++|...||+.|+++++.++++|||+|+..+..+++|++.++......+.+.+..++.+++++++++
T Consensus 85 ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~ 164 (470)
T d1rv3a_ 85 RALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT 164 (470)
T ss_dssp HHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTT
T ss_pred HHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEeccc
Confidence 99999999988888999999999999999999999999999999999999998876655556666767788888899888
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCC
Q 023191 180 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKS 259 (286)
Q Consensus 180 ~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~ 259 (286)
+.+|++++++.+.+++||+|+++.|+++...|++++.+||++.|+++++|.+|.+|++..+.+++|++++|++++|+||+
T Consensus 165 ~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHKt 244 (470)
T d1rv3a_ 165 GYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKT 244 (470)
T ss_dssp CSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGG
T ss_pred CcccHHHHHHHHHhhCcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEecchhhhh
Q 023191 260 LRGPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 260 l~gp~gG~l~~~~~~~~~~ 278 (286)
|.||+||+|++++++...+
T Consensus 245 lrGPrgGiI~~~~~~~~~~ 263 (470)
T d1rv3a_ 245 LRGCRAGMIFYRRGVRSVD 263 (470)
T ss_dssp GCCCSCEEEEEECSBCC--
T ss_pred ccCCcceEEEEcccccccc
Confidence 9999999999999865544
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=8.9e-44 Score=313.69 Aligned_cols=243 Identities=47% Similarity=0.812 Sum_probs=226.9
Q ss_pred ccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 023191 25 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (286)
+.++..+|++++.+.+|..|+.+.|+|+++||++|+.|++++...+.++|.+|||+.+||++++.++++|..+.++.+++
T Consensus 2 ~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~l 81 (405)
T d1kl1a_ 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQL 81 (405)
T ss_dssp CHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHcCceEeccCCcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCH
Q 023191 105 FRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDY 184 (286)
Q Consensus 105 ~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~ 184 (286)
||++. ++|...||+.|+++++.++++|||+|+..++.+++|.+.+.. ....|..+..+.++++++++.+|+
T Consensus 82 F~a~~----anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~-----~~~~g~~~~~~~y~~d~~~~~ID~ 152 (405)
T d1kl1a_ 82 FGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSP-----VNFSGVQYNFVAYGVDPETHVIDY 152 (405)
T ss_dssp HCCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCT-----TSHHHHHSEEEEECBCTTTCSBCH
T ss_pred hCCCc----ceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCcc-----ccccceEEEEEEeccchhcccccH
Confidence 99977 689999999999999999999999999999999999987763 344555577787788888899999
Q ss_pred HHHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCC
Q 023191 185 DQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPR 264 (286)
Q Consensus 185 e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~ 264 (286)
+++++.+..++||+|+++.|.++...|++++.++|++.|+++++|.+|.+|++..+.+++|++++|++++|+||+|.||+
T Consensus 153 d~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPr 232 (405)
T d1kl1a_ 153 DDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPR 232 (405)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCS
T ss_pred HHHHHHHHhhCcceEEecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecchhh
Q 023191 265 GAMIFFRKGVKE 276 (286)
Q Consensus 265 gG~l~~~~~~~~ 276 (286)
||+|++++++..
T Consensus 233 gg~I~~~~~~~~ 244 (405)
T d1kl1a_ 233 GGMILCQEQFAK 244 (405)
T ss_dssp CEEEEECHHHHH
T ss_pred CceEEecchhHH
Confidence 999999987553
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-43 Score=309.31 Aligned_cols=241 Identities=50% Similarity=0.829 Sum_probs=225.3
Q ss_pred cccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHC
Q 023191 26 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAF 105 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (286)
.+++.+|++++.+.+|..++.+.|+|+++||++|+.|++++...+.++|.+|||+.++|++++.++++|..+.++.+++|
T Consensus 6 ~l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF 85 (416)
T d1dfoa_ 6 NIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELF 85 (416)
T ss_dssp CHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCHHHHHHHHHHHHHHHcCceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHH
Q 023191 106 RLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYD 185 (286)
Q Consensus 106 g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e 185 (286)
|+.. ++|...||+.|+++++.++++|||+|+..+..+++|++.++ .+.+.|..+..++++++ +++.+|++
T Consensus 86 ~a~~----anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~-----~~~~~g~~~~~~~y~~d-~~~~IDyd 155 (416)
T d1dfoa_ 86 GADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGS-----PVNFSGKLYNIVPYGID-ATGHIDYA 155 (416)
T ss_dssp TCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTC-----TTSHHHHHSEEEEECBC-SSSSBCHH
T ss_pred CCCc----ceeecccCccHHHHHHHHhcCCCCeeeeccccccccccccc-----cccccCceEEEEecccC-CccCccHH
Confidence 9976 68999999999999999999999999999999999998876 34566666778888887 56789999
Q ss_pred HHHHHhhhcCCcEEEEcCCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc
Q 023191 186 QLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG 265 (286)
Q Consensus 186 ~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g 265 (286)
++++.+.+++||+|+++.|+++...|++++.++|++.|+++++|.+|.+|++..+.+++|++++|++++|+||+|.||+|
T Consensus 156 ~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrg 235 (416)
T d1dfoa_ 156 DLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG 235 (416)
T ss_dssp HHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSC
T ss_pred HHHHHHHHhccceEEecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecchhh
Q 023191 266 AMIFFRKGVKE 276 (286)
Q Consensus 266 G~l~~~~~~~~ 276 (286)
|++++|++..+
T Consensus 236 giI~~~~~~~~ 246 (416)
T d1dfoa_ 236 GLILAKGGSEE 246 (416)
T ss_dssp EEEEESSCCHH
T ss_pred eEEEeccchHh
Confidence 99999865433
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.94 E-value=4.2e-27 Score=208.28 Aligned_cols=201 Identities=15% Similarity=0.172 Sum_probs=146.2
Q ss_pred CCCCCHHHHHHhccccccCCCCCCCCCcccCCc--ch--HHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHH
Q 023191 55 ENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGN--EY--IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVY 129 (286)
Q Consensus 55 e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~--~~--~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l 129 (286)
.+.+++++++++.++ .+||+..++.... +. .+.+.+.+++.+++++|.+. +++|+|++ ++.+++
T Consensus 11 ~~~l~~~a~~a~~~~-----~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~------~~~t~g~t~a~~~~~ 79 (364)
T d2e7ja1 11 GGKLTEEARQALLEW-----GDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDV------ARVTNGAREAKFAVM 79 (364)
T ss_dssp TCCCCHHHHHHHHHC-------------------------CCHHHHHHTHHHHHTTSSE------EEEESSHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHH-----hcCCchhccccccccccccChHHHHHHHHHHHHHhCcCE------EEEECcHHHHHHHHH
Confidence 445789999999763 3344332221110 00 11244556788999999763 78888888 999899
Q ss_pred HHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc----CCcEEEEc-CC
Q 023191 130 TALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF----RPKLIVAG-AS 204 (286)
Q Consensus 130 ~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~----~tk~v~i~-~~ 204 (286)
.++++|||+|+++.++|.+... .+...|.+++.+|+. +..++.+|++++++++++. ++++|+++ ++
T Consensus 80 ~al~~~gd~Vi~~~~~h~s~~~--------~~~~~g~~v~~v~~~-~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~ 150 (364)
T d2e7ja1 80 HSLAKKDAWVVMDENCHYSSYV--------AAERAGLNIALVPKT-DYPDYAITPENFAQTIEETKKRGEVVLALITYPD 150 (364)
T ss_dssp HHHCCTTCEEEEETTCCHHHHH--------HHHHTTCEEEEECCC-CTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred HHHhCCCcEEEeecccccccch--------HHHhccceEEEeeec-cccccccCHHHHHhhhhhhcccCCceEEEeecCC
Confidence 9999999999999988877654 344677777777753 3256789999999999762 23467776 65
Q ss_pred C-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 205 n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
| +|...|+++|+++|++||+++|+|++|+.|.++.+.... ++|++++|+||+|++|.+ |++++++++.+..
T Consensus 151 n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~---g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~ 223 (364)
T d2e7ja1 151 GNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGMKEEWAEIV 223 (364)
T ss_dssp TTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEECTTTTTTT
T ss_pred CCCceeecchhheeccccccchhhccccchhhhhhhccccc---ccceeeeccccccCCCCCEEEEEECHHHHHHH
Confidence 5 788999999999999999999999999988776544333 399999999999988876 9999998866544
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=6.2e-26 Score=202.78 Aligned_cols=235 Identities=14% Similarity=0.109 Sum_probs=170.4
Q ss_pred cccccccChHHHHHHHHHHHHH----HcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQ----WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLC 97 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~----~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (286)
+++++.+.|+....+.+...+. .+.|+|..|++ ++|+++++++.+++.+.. .+ |+...+..+|++++
T Consensus 5 ~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~-~~------Y~~~~G~~~lR~~i 77 (382)
T d1b5pa_ 5 SRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGK-TK------YAPPAGIPELREAL 77 (382)
T ss_dssp CHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CS------CCCTTCCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCC-cC------CCCCCCCHHHHHHH
Confidence 3444566666666665433221 35799999888 468999999998886522 12 45567788999999
Q ss_pred HHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 98 QKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 98 ~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
.+++.+.+|.+.+. .+|++|+|++ ++..++++++++||.|++++ |.|..|...+...|..+..++..-+
T Consensus 78 a~~~~~~~~~~~~~--~~i~it~G~~~al~~~~~~l~~~gd~vl~~~--------P~y~~~~~~~~~~g~~~~~v~~~~~ 147 (382)
T d1b5pa_ 78 AEKFRRENGLSVTP--EETIVTVGGSQALFNLFQAILDPGDEVIVLS--------PYWVSYPEMVRFAGGVVVEVETLPE 147 (382)
T ss_dssp HHHHHHTTCCCCCG--GGEEEESHHHHHHHHHHHHHCCTTCEEEEEE--------SCCTHHHHHHHHTTCEEEEEECCGG
T ss_pred Hhhhhhhccccccc--ccceecCCHHHHHHHHHHHhCCCCCEEEECC--------CCcHHHHHHHHHhcCeEEEEecccc
Confidence 99999988875433 4699999999 88889999999999999999 5554444455677776666664322
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC---c
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE---Y 248 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~---~ 248 (286)
+++.+|++++++.+++ ++++++++ |+| +|... .+++|+++|++||++||+|++|..-... +....+.. .
T Consensus 148 -~~~~~d~~~l~~~~~~-~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~ 224 (382)
T d1b5pa_ 148 -EGFVPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE-GEHFSPGRVAPE 224 (382)
T ss_dssp -GTTCCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSS-SCCCCGGGTCTT
T ss_pred -cccCCCHHHHHHhCCC-CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecC-CCCCCHHHcCCC
Confidence 4678999999999887 88999887 777 77555 4778999999999999999997632222 22222211 2
Q ss_pred ceEEEeCCCCCCC--CCCceEEEEecchhhhh
Q 023191 249 ADVVTTTTHKSLR--GPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 249 ~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~ 278 (286)
..+++.|++|+|+ |.+.|++++++++.+..
T Consensus 225 ~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~ 256 (382)
T d1b5pa_ 225 HTLTVNGAAKAFAMTGWRIGYACGPKEVIKAM 256 (382)
T ss_dssp TEEEEEESTTTTTCGGGCCEEEECCHHHHHHH
T ss_pred CEEEEecchhhccCcHhheEEEEECHHHHHHH
Confidence 3478999999875 55669999988765443
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=9.5e-26 Score=202.03 Aligned_cols=206 Identities=17% Similarity=0.217 Sum_probs=159.4
Q ss_pred CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL 132 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~ 132 (286)
+-.++++.|+++|.+++.+....+++....+.......++.+.+|+.+++++|++++ +|.+++|++ ++..++.++
T Consensus 10 a~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~----~I~~~~~~t~~l~~~~~~~ 85 (391)
T d1p3wa_ 10 ATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR----EIVFTSGATESDNLAIKGA 85 (391)
T ss_dssp TCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG----GEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC----cEEEECCHHHHHHHHHhhh
Confidence 445789999999999886532223333222222223345556788999999999885 499999998 655455544
Q ss_pred ----cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-C
Q 023191 133 ----LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-Y 206 (286)
Q Consensus 133 ----~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~ 206 (286)
+++||+|++.+++|+++..++.. +...|.+++.++ .+ +++.+|++++++++++ +||+|+++ ++| +
T Consensus 86 ~~~~~~~gd~Vv~~~~~~~s~~~~~~~-----~~~~G~~v~~v~--~~-~~~~~d~~~~~~~i~~-~T~lv~is~~~n~t 156 (391)
T d1p3wa_ 86 ANFYQKKGKHIITSKTEHKAVLDTCRQ-----LEREGFEVTYLA--PQ-RNGIIDLKELEAAMRD-DTILVSIMHVNNEI 156 (391)
T ss_dssp HHHHGGGCCEEEEETTSCHHHHHHHHH-----HHHTTCEEEEEC--CC-TTSCCCHHHHHHHCCT-TEEEEECCSBCTTT
T ss_pred hhhhcCCCCEEEEeccccchHHHHHHH-----HHHcCCEEEEeC--CC-CCCeEcHHHHHHhCCC-CcEEEEEECCCCCC
Confidence 58999999999999887654431 223465566665 44 4678999999999998 99999998 666 8
Q ss_pred CCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhh
Q 023191 207 ARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (286)
Q Consensus 207 g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (286)
|.+.|+++|.++|++||+++++|++|+.|..+.++.... +|++++|+|||+ ||.| |+++++++...
T Consensus 157 G~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~---~D~~~~s~~k~~-g~~g~g~~~~~~~~~~ 223 (391)
T d1p3wa_ 157 GVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLK---VDLMSFSGHKIY-GPKGIGALYVRRKPRV 223 (391)
T ss_dssp CCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSC---CSEEEEESTTTT-SCSSCEEEEECBTTBC
T ss_pred eeECCHHHHHHHhccCCcEEEEeeccccCCccccchhcc---cccccccccccc-CCCceEEEEEecchhc
Confidence 899999999999999999999999999999988887776 999999999986 6777 99999887543
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.93 E-value=1.7e-25 Score=200.43 Aligned_cols=213 Identities=15% Similarity=0.087 Sum_probs=159.1
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.|+|..|++ ++|+.+++++.+.+.+.. ..|+...+..++++++.+++.+.+|+..+. .+|++|+|++
T Consensus 31 ~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~-------~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~--~~i~it~G~~~ 101 (388)
T d1j32a_ 31 DVCSFSAGEPDFNTPKHIVEAAKAALEQGK-------TRYGPAAGEPRLREAIAQKLQRDNGLCYGA--DNILVTNGGKQ 101 (388)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTC-------CSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEESHHHH
T ss_pred CeEECCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHHHHHhcccCCCC--ceEEEcCCHHH
Confidence 6799998887 468999999998886532 125556788899999999999998875433 4699999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.++++|||.|++++ |.|+.|...+...|...+.++...+ +++.+|++++++.+++ ++++++++
T Consensus 102 al~~~~~~~~~~gd~Vlv~~--------P~y~~~~~~~~~~~~~~v~~~~~~~-~~~~~d~~~l~~~~~~-~~~~~~~~~ 171 (388)
T d1j32a_ 102 SIFNLMLAMIEPGDEVIIPA--------PFWVSYPEMVKLAEGTPVILPTTVE-TQFKVSPEQIRQAITP-KTKLLVFNT 171 (388)
T ss_dssp HHHHHHHHHCCTTCEEEEES--------SCCTHHHHHHHHTTCEEEEECCCGG-GTTCCCHHHHHHHCCT-TEEEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEcC--------CCcHHHHHHHHHhcCeEEEEecccc-cccCCCHHHHHHhCCC-CCeEEEECC
Confidence 88879999999999999999 5555544455566766666654333 4678999999999987 88999887
Q ss_pred CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC------cceEEEeCCCCCCC--CCCceEEEE
Q 023191 203 ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE------YADVVTTTTHKSLR--GPRGAMIFF 270 (286)
Q Consensus 203 ~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~------~~D~v~~s~~K~l~--gp~gG~l~~ 270 (286)
|+| +|...+ +++|+++|++||++||+|+++..-............ ...+++.|++|.|+ |.+.|++++
T Consensus 172 P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~ 251 (388)
T d1j32a_ 172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAG 251 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred CCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEE
Confidence 777 775554 778889999999999999996433332222211111 13478999999874 566799999
Q ss_pred ecchhhhh
Q 023191 271 RKGVKEIN 278 (286)
Q Consensus 271 ~~~~~~~~ 278 (286)
++++.+..
T Consensus 252 ~~~~~~~~ 259 (388)
T d1j32a_ 252 PVPLVKAA 259 (388)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 88776543
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.92 E-value=1.9e-25 Score=199.80 Aligned_cols=235 Identities=13% Similarity=0.078 Sum_probs=170.5
Q ss_pred cccccChHHHHHHHHHHHHHHcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHH
Q 023191 26 PLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (286)
+++.+.++.++++.+.....++.|+|..|++ ++|+.+++++.+++.+.. .+ |+...+..+|++++.+++.+
T Consensus 5 ~~~~~~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~-~~------Y~~~~G~~~lr~aia~~~~~ 77 (388)
T d1gdea_ 5 RLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGL-TH------YGPNIGLLELREAIAEKLKK 77 (388)
T ss_dssp HHHHSCCCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTC-CS------CCCTTCCHHHHHHHHHHHHH
T ss_pred hhhhCCccHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCc-cC------CCCCcCCHHHHHHHHHHHHh
Confidence 3344556666666665555678999999987 478999999998886522 12 45567788999999999987
Q ss_pred HCCCCC-CCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCC
Q 023191 104 AFRLDP-EKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY 181 (286)
Q Consensus 104 ~~g~~~-~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 181 (286)
..+... +. .+|++|+|++ ++..++.++++|||+|++++ |.|..|...+...|.+++.+|+..+ +++.
T Consensus 78 ~~~~~~~~~--~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~--------P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~ 146 (388)
T d1gdea_ 78 QNGIEADPK--TEIMVLLGANQAFLMGLSAFLKDGEEVLIPT--------PAFVSYAPAVILAGGKPVEVPTYEE-DEFR 146 (388)
T ss_dssp HHCCCCCTT--TSEEEESSTTHHHHHHHTTTCCTTCEEEEEE--------SCCTTHHHHHHHHTCEEEEEECCGG-GTTC
T ss_pred hccccCCCh--heeeeccCcchHHHHHHHHhcCCCCEEEECC--------CCcHHHHHHHHHcCCEEEEeecccc-cCCC
Confidence 666521 11 3599999999 88878899999999999999 5555555456677877766764333 4679
Q ss_pred CCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCC--CC---cceE
Q 023191 182 IDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP--FE---YADV 251 (286)
Q Consensus 182 ~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~--~~---~~D~ 251 (286)
+|+++|++.+++ ++++++++ |+| +|... .+++|+++|++|+++||+|++|..-.......... +. ...+
T Consensus 147 ~d~~~l~~~~~~-~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i 225 (388)
T d1gdea_ 147 LNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTI 225 (388)
T ss_dssp CCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEE
T ss_pred CCHHHHHHhCcc-CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEE
Confidence 999999999987 89999997 777 77554 47788999999999999999975432221111110 11 2348
Q ss_pred EEeCCCCCCC--CCCceEEEEecchhhhhc
Q 023191 252 VTTTTHKSLR--GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 252 v~~s~~K~l~--gp~gG~l~~~~~~~~~~~ 279 (286)
++.|++|.|+ |.+.|++++.+++.....
T Consensus 226 ~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~ 255 (388)
T d1gdea_ 226 TVNGFSKTFAMTGWRLGFVAAPSWIIERMV 255 (388)
T ss_dssp EEEESTTTTTCGGGCCEEEECCHHHHHHHH
T ss_pred EEeCChhhccCccccEEEEEeeccchhhhh
Confidence 8999999874 556699999887665443
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.5e-25 Score=200.41 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=160.6
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHH
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a 131 (286)
++..++|+.+++++.+++.+.+ ++++...+.......++.+.+|+.+++++|+...+ +|++++|++ ++..++.+
T Consensus 29 a~~~~~p~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~---~i~~~~~~T~~~~~~~~~ 103 (405)
T d1jf9a_ 29 AASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKMENVRKRASLFINARSAE---ELVFVRGTTEGINLVANS 103 (405)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGG---GEEEESSHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhcc--CCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcc---cccccCcHHHHHHHHHhc
Confidence 3455789999999999887654 33322111111223455667899999999975432 599999988 65545554
Q ss_pred ----hcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 132 ----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 132 ----~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
..++||+|++.+.+|++...++.... +..|.+++.+| ++ +++.+|++.+++++++ +|++|.++ .+|
T Consensus 104 ~~~~~~~~g~~il~~~~e~~s~~~~~~~~a----~~~g~~v~~~~--~~-~~g~~~~~~~~~~i~~-~t~lv~~~~v~~~ 175 (405)
T d1jf9a_ 104 WGNSNVRAGDNIIISQMEHHANIVPWQMLC----ARVGAELRVIP--LN-PDGTLQLETLPTLFDE-KTRLLAITHVSNV 175 (405)
T ss_dssp HHHHHCCTTCEEEEETTCCGGGTHHHHHHH----HHHTCEEEEEC--BC-TTSCBCGGGHHHHCCT-TEEEEEEESBCTT
T ss_pred ccccccCCCCEEEEEeCcccchHHHHHHHH----HHcCcEEEEEC--CC-CCCcCCHHHHHHhccC-CcEEEEEecCCCc
Confidence 36899999999999999887765332 23455566676 44 5688999999999988 99999997 555
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhh
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKE 276 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~ 276 (286)
+|.+.|+++|.++||++|+++++|++|++|.++.++...+ +|++++|+|||+ ||+| |++++++++.+
T Consensus 176 tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~---~D~~~~s~hK~~-Gp~G~g~l~v~~~~~~ 243 (405)
T d1jf9a_ 176 LGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALD---CDFYVFSGHKLY-GPTGIGILYVKEALLQ 243 (405)
T ss_dssp TCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHT---CSEEEEEGGGTT-SCSSCEEEEECHHHHT
T ss_pred ccccCchHHhhhHHHHcCCeeecccceeccccccchhhcC---Cceeeccccccc-cCCCceeeeechhhhc
Confidence 8899999999999999999999999999999988776666 999999999995 7999 99999987654
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.91 E-value=2e-24 Score=192.48 Aligned_cols=210 Identities=16% Similarity=0.173 Sum_probs=157.1
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHH
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTA 131 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a 131 (286)
.+..++|..|++++.+.+...+..+. ..+.......++.+++|+.+++++|++++ +|++|+|++ ++..++.+
T Consensus 14 ~~~~~~p~~v~ea~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~la~~~~~~~~----~i~~~~g~t~a~~~~~~~ 86 (381)
T d1elua_ 14 GGQGILPTVALEAITAMYGYLQENGP---FSIAANQHIQQLIAQLRQALAETFNVDPN----TITITDNVTTGCDIVLWG 86 (381)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHHCS---SSHHHHHHHHHHHHHHHHHHHHHTTSCGG----GEEEESSHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHhhcCCC---ccchhhHHHHHHHHHHHHHHHHHhCCCcc----cEEEECChHHHhhhcchh
Confidence 44557899999999887754221110 01122234556677889999999999875 499999988 77668888
Q ss_pred h-cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCC
Q 023191 132 L-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YAR 208 (286)
Q Consensus 132 ~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~ 208 (286)
+ .++||+|++++.+|+++..++..+. ...|..++.++.+.+ .....+.+.+++.+++ +|++++++ ++| +|.
T Consensus 87 l~~~~g~~i~~~~~~~~s~~~~~~~~~----~~~g~~~~~v~~~~~-~~~~~~~~~l~~~i~~-~t~~v~i~~~~n~tG~ 160 (381)
T d1elua_ 87 LDWHQGDEILLTDCEHPGIIAIVQAIA----ARFGITYRFFPVAAT-LNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQ 160 (381)
T ss_dssp SCCCTTCEEEEETTCCHHHHHHHHHHH----HHHCCEEEEECCGGG-SSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCC
T ss_pred hhhcCCceEEEeccccceeeecccccc----ccccccccccccccc-cccchHHHHHHhhhcc-cccccccccccccccc
Confidence 7 7899999999999988765544222 234655666654322 1223335667777777 89999997 666 789
Q ss_pred ccCHHHHHHHHHhc----CCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 209 LYDYERIRKVCNKQ----KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 209 ~~~l~~I~~ia~~~----~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
..|+++|.++|++| ++++++|++|+.|..+.++.... +|++++|+|||+++|.| |++++++++.+..
T Consensus 161 ~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~---~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~ 232 (381)
T d1elua_ 161 VLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLE---VDYYAFTGHKWFAGPAGVGGLYIHGDCLGEI 232 (381)
T ss_dssp BCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSC---CSEEEEESSSTTCCCTTCEEEEECTTTGGGC
T ss_pred cchhhHHHHHHhhcccccccccccccccccccccccccccc---cccccccccccccccchhhHHHhhHHHHHhc
Confidence 99999999999985 58999999999998887776655 99999999999999999 9999998876544
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.90 E-value=7.2e-24 Score=190.95 Aligned_cols=212 Identities=13% Similarity=0.106 Sum_probs=160.0
Q ss_pred ceec-CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 49 LELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 49 i~L~-~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
+=|+ ++..++|+.|++++.+++.+.+ +++....+.......++-+.+|+.+++++|++.++ .|+++++++ ++.
T Consensus 24 iYld~a~~~~~p~~v~~~~~~~~~~~~--~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~---~i~~~~~tt~~~n 98 (408)
T d1t3ia_ 24 VYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPR---EIVYTRNATEAIN 98 (408)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGG---GEEEESSHHHHHH
T ss_pred EEeeCccccCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcc---cEEeecchHHHHH
Confidence 4453 4455789999999999887754 33322111111223455667899999999997543 488888888 554
Q ss_pred HHHHH----hcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 127 QVYTA----LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 127 ~~l~a----~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
.++.+ -+++||+|++.+.+|++...++... ....|..++.+|. + .++..|.+.+++++++ +|++|.++
T Consensus 99 ~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~----~~~~g~~v~~~~~--~-~~~~~~~~~l~~~~~~-~t~lv~i~ 170 (408)
T d1t3ia_ 99 LVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMV----AAKTGAVLKFVQL--D-EQESFDLEHFKTLLSE-KTKLVTVV 170 (408)
T ss_dssp HHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHH----HHHHCCEEEEECB--C-TTSSBCHHHHHHHCCT-TEEEEEEE
T ss_pred HHHhhccccccCCCCEEEeecccchhhhhhhhhh----hhccCceEeeeec--c-ccccccHHHhhhccCC-CceEEEEe
Confidence 44444 3689999999999999987766422 1234555666653 3 4578899999999988 99999997
Q ss_pred -CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
.+| +|...|+++|.++|+++|+++++|++|++|.++.++...+ +|++++|+||| +||+| |+++++++....
T Consensus 171 ~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~---~D~~~~s~hK~-~gp~G~g~l~v~~~~~~~ 244 (408)
T d1t3ia_ 171 HISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLID---CDWLVASGHKM-CAPTGIGFLYGKEEILEA 244 (408)
T ss_dssp SBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHT---CSEEEEEGGGT-TSCTTCEEEEECHHHHHH
T ss_pred cccccccccCcHHHHhhhhhccCceeeeccceecccccccccccC---CceEEeccccc-cCCCCccccccchhhhhc
Confidence 444 8899999999999999999999999999999988877666 99999999998 57888 999999887544
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.89 E-value=2.5e-23 Score=187.94 Aligned_cols=242 Identities=12% Similarity=0.070 Sum_probs=176.7
Q ss_pred ccccccccChHHHHHHHHHHHHHHcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHH
Q 023191 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (286)
++++++..+++++.++.+.. .+.+.|+|..|++ ++|+.+++++.+++.+. .+..+.|+...+..+|++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~----~~~~~~Y~~~~G~~~lReaiA~~ 78 (418)
T d2r5ea1 4 LPKRYQGSTKSVWVEYIQLA-AQYKPLNLGQGFPDYHAPKYALNALAAAANSP----DPLANQYTRGFGHPRLVQALSKL 78 (418)
T ss_dssp CCGGGTTCCCCHHHHHHHHH-HHHCCEECSSSCCSSCCCHHHHHHHHHHHTCS----CGGGGSCCCTTCCHHHHHHHHHH
T ss_pred hhhhhcCCCCCHHHHHHHHh-cCCCCEEccCCCCCCCCCHHHHHHHHHHHhCC----CccCcCCCCCCCCHHHHHHHHHH
Confidence 46778888999998887754 4568899999987 46889999998887652 11223467778889999999999
Q ss_pred HHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCC-
Q 023191 101 ALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES- 178 (286)
Q Consensus 101 ~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~- 178 (286)
+++.+|.+.++ ..+|++|+|++ ++..+++++++|||.|++++ |+|+.+...+...|..++.+++..+..
T Consensus 79 ~~~~~g~~~~p-~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~--------P~y~~~~~~~~~~g~~~~~v~~~~~~~~ 149 (418)
T d2r5ea1 79 YSQLVDRTINP-MTEVLVTVGAYEALYATIQGHVDEGDEVIIIE--------PFFDCYEPMVKAAGGIPRFIPLKPNKTG 149 (418)
T ss_dssp HHHHHTSCCCT-TTSEEEESHHHHHHHHHHHHHCCTTCEEEEEE--------SCCTTHHHHHHHTTCEEEEEECEESCCS
T ss_pred HHHHhCCCCCc-cceEEEcCCCchhhhhhhhhccccccceeccc--------cccchhhHHHHHcCCeEEEEEecccccc
Confidence 99999875321 02599999999 88889999999999999999 555544445566777777776543311
Q ss_pred ------CCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCC--
Q 023191 179 ------TGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-- 245 (286)
Q Consensus 179 ------~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~-- 245 (286)
.+.++.+++.+.... ++++++++ ++| +|...+ +++|+++|++|++++|+|+++..-..........
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~ 228 (418)
T d2r5ea1 150 GTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICT 228 (418)
T ss_dssp SCEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred cchhhhhhhhhHHHHhhhhhc-cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccc
Confidence 246789999888776 88999998 666 665544 6788999999999999999975433321111111
Q ss_pred CC---cceEEEeCCCCCC--CCCCceEEEEecchhhhhc
Q 023191 246 FE---YADVVTTTTHKSL--RGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 246 ~~---~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~~~ 279 (286)
+. ..-+++.|++|.+ .|.+-|++++.+++.+..+
T Consensus 229 ~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~ 267 (418)
T d2r5ea1 229 LPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQ 267 (418)
T ss_dssp STTTGGGEEEEEEHHHHTTCGGGCCEEEESCHHHHHHHH
T ss_pred cccccceeeeeecCCccccCCCcccccccccchhhhhhh
Confidence 11 1337788999986 4455599999988765554
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=4.3e-23 Score=183.53 Aligned_cols=202 Identities=17% Similarity=0.253 Sum_probs=155.0
Q ss_pred CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHH-
Q 023191 53 PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYT- 130 (286)
Q Consensus 53 ~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~- 130 (286)
++..++|+.|++++.+++.+.+ ++++..+.. .....++.+++|+.+++++|++++ +|.+++|++ ++..++.
T Consensus 8 a~~~~~p~~v~ea~~~~~~~~~--~np~~~~~~-~~~~~~~~~~aR~~ia~l~~~~~~----~i~~~~~~T~~l~~~~~~ 80 (376)
T d1eg5a_ 8 NATTRVDDRVLEEMIVFYREKY--GNPNSAHGM-GIEANLHMEKAREKVAKVLGVSPS----EIFFTSCATESINWILKT 80 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHTCC--CCTTCSSHH-HHHHHHHHHHHHHHHHHHHTSCGG----GEEEESCHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHcC--CCCccccHH-HHHHHHHHHHHHHHHHHHcCCCCC----cEEEECCHHHHHHhhhhc
Confidence 4556889999999999988765 444322211 223344555678999999999885 499999998 6554554
Q ss_pred ---HhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 131 ---ALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 131 ---a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
....+|+.|++....|+++..+... ++..|.+++.+| ++ +++.+|++++++++++ +|++|+++ .+|
T Consensus 81 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~-----~~~~g~~v~~vp--~~-~~~~id~~~l~~~i~~-~t~lv~is~v~~~ 151 (376)
T d1eg5a_ 81 VAETFEKRKRTIITTPIEHKAVLETMKY-----LSMKGFKVKYVP--VD-SRGVVKLEELEKLVDE-DTFLVSIMAANNE 151 (376)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHH-----HHHTTCEEEECC--BC-TTSCBCHHHHHHHCCT-TEEEEEEESBCTT
T ss_pred ccccccccCcccccccccchhhHHHHHH-----HHhcCCEEEEEc--CC-CCCeECHHHHHHhcCC-CceEEEEECCccc
Confidence 3468889999888777766544432 223465566665 45 5689999999999998 99999998 555
Q ss_pred CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecch
Q 023191 206 YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGV 274 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~ 274 (286)
+|...+++++.++++.+ ++++++|++|++|.++.++...+ +|++++|+|||+ ||+| |+++.+++.
T Consensus 152 tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~---~D~~~~s~~K~~-gp~G~~~l~~~~~~ 219 (376)
T d1eg5a_ 152 VGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLE---VDYASFSAHKFH-GPKGVGITYIRKGV 219 (376)
T ss_dssp TCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTC---CSEEEEEGGGGT-SCTTCEEEEECTTS
T ss_pred cceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccC---ccceecccceee-cCCCceeEEeccCc
Confidence 88999999999998665 89999999999999998887776 999999999995 7888 999998753
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=1.4e-22 Score=180.20 Aligned_cols=215 Identities=15% Similarity=0.088 Sum_probs=156.9
Q ss_pred HcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
.+.|+|+.|++ ++|+.+++++.+.+.+.. ..|+...+..+|++++.+++.+.+|.+.+. .+|++|+|++
T Consensus 28 ~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~-------~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~--~~i~~t~G~~ 98 (375)
T d1o4sa_ 28 EDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-------VKYTDPRGIYELREGIAKRIGERYKKDISP--DQVVVTNGAK 98 (375)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-------CCCCCTTCCHHHHHHHHHHHHHHHTCCCCG--GGEEEESHHH
T ss_pred CCeEECCCcCCCCCCCHHHHHHHHHHHhcCC-------cCCCCCcCCHHHHHHHHhhhhhcccccccc--ccccccCcHH
Confidence 35799999887 468999999988776522 125666788999999999999988875543 4799999999
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++..++.++++|||.|++++| .|+.+...+...+.....++...+ +.+.+|.+.++....+ ++++++++
T Consensus 99 ~al~~~~~~l~~~gd~vlv~~P--------~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~ 168 (375)
T d1o4sa_ 99 QALFNAFMALLDPGDEVIVFSP--------VWVSYIPQIILAGGTVNVVETFMS-KNFQPSLEEVEGLLVG-KTKAVLIN 168 (375)
T ss_dssp HHHHHHHHHHCCTTCEEEEEES--------CCTTHHHHHHHTTCEEEEEECCGG-GTTCCCHHHHHHTCCT-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEccC--------ccccchhhhhcccccccccccccc-ccccchhHHHHHhhcc-CccEEEEe
Confidence 888899999999999999994 444444344455655555554333 5678999999888777 88899887
Q ss_pred -CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCC----CCCCcceEEEeCCCCCCC--CCCceEEEEe
Q 023191 203 -ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP----SPFEYADVVTTTTHKSLR--GPRGAMIFFR 271 (286)
Q Consensus 203 -~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~----~~~~~~D~v~~s~~K~l~--gp~gG~l~~~ 271 (286)
|+| +|... .+++|+++|++|+++||.|+++........... ......-+++.|++|.|+ |.+.|++++.
T Consensus 169 nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~ 248 (375)
T d1o4sa_ 169 SPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISS 248 (375)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECC
T ss_pred CCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCcccccccccc
Confidence 766 66544 477889999999999999998653322211110 000124488999999874 5666999998
Q ss_pred cchhhhhc
Q 023191 272 KGVKEINK 279 (286)
Q Consensus 272 ~~~~~~~~ 279 (286)
+++.....
T Consensus 249 ~~~~~~~~ 256 (375)
T d1o4sa_ 249 EKVATAVS 256 (375)
T ss_dssp HHHHHHHH
T ss_pred ccchhhhh
Confidence 87665443
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=1.8e-23 Score=185.63 Aligned_cols=232 Identities=16% Similarity=0.130 Sum_probs=164.6
Q ss_pred ccccccccChHHHHHHHHHHHHHHcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHH
Q 023191 23 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 100 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (286)
++.+.+...++++..++.. +++.+.|+|..|++ ++|+.+++++.+++.+. .+ |+...+..+|+ +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l-a~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~--~~------Y~~~~G~~elr----~a 69 (368)
T d1v2da_ 3 LHPRTEAAKESIFPRMSGL-AQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQ--DQ------YAPPAGLPALR----EA 69 (368)
T ss_dssp CCGGGGGC---CHHHHHHH-HHHHTCEECCCCSCSSCCCHHHHHHHHHHTTTS--CS------CCCTTCCHHHH----HH
T ss_pred CChhhhhcCCCHHHHHHHH-hccCCCEEecCCCCCCCCCHHHHHHHHHHhhcc--cC------CCCCcCCHHHH----HH
Confidence 4566777888999988765 45567899988876 57899999999887542 13 34446667777 55
Q ss_pred HHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCC
Q 023191 101 ALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST 179 (286)
Q Consensus 101 ~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 179 (286)
++++++++++ +|++|+|++ ++..++.+++.+||.|++++|.|+.+. ..+...|..++.++++...++
T Consensus 70 iA~~~~~~~~----~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~--------~~~~~~g~~~~~~~~~~~~~~ 137 (368)
T d1v2da_ 70 LAEEFAVEPE----SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYL--------PDAFLAGAKARLVRLDLTPEG 137 (368)
T ss_dssp HHHHHTSCGG----GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHH--------HHHHHTTCEEEEEECEEETTE
T ss_pred HHhhcccCCc----ceeeccchHHHHHHHhhccccccccccccCCcchhhh--------hHHHhcCCccceecccccccc
Confidence 5566788875 599999999 888799999999999999995555443 344566666767776555456
Q ss_pred CCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC--CcceEE
Q 023191 180 GYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF--EYADVV 252 (286)
Q Consensus 180 ~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~--~~~D~v 252 (286)
+.+|++++++.+++ ++++++++ |+| +|...+ +++|+++|++|++++|+|+++.............. ....++
T Consensus 138 ~~~d~~~l~~~~~~-~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (368)
T d1v2da_ 138 FRLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFT 216 (368)
T ss_dssp EECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEE
T ss_pred ccCCHHHHHHhhcc-CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccce
Confidence 78999999999987 88888887 766 776554 78899999999999999998654433322211100 113455
Q ss_pred EeCCCCCC--CCCCceEEEEecchhhhhcc
Q 023191 253 TTTTHKSL--RGPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 253 ~~s~~K~l--~gp~gG~l~~~~~~~~~~~~ 280 (286)
+.+++|.+ .|.+.|++..++++.+..++
T Consensus 217 ~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~ 246 (368)
T d1v2da_ 217 VGSAGKRLEATGYRVGWIVGPKEFMPRLAG 246 (368)
T ss_dssp EEEHHHHTTCGGGCCEEEECCTTTHHHHHH
T ss_pred eecccccccccccccccccccccccchhhh
Confidence 66666655 44455999999887765543
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.89 E-value=4.5e-23 Score=184.91 Aligned_cols=207 Identities=19% Similarity=0.134 Sum_probs=156.7
Q ss_pred HcCceecCCCC-----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC
Q 023191 46 WKGLELIPSEN-----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS 120 (286)
Q Consensus 46 ~~~i~L~~~e~-----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s 120 (286)
.+.|+|..|++ ++|+.+++++.+++.+.. ..|+...+..+|++++.+++.+.+|++.+. .+|++++
T Consensus 30 ~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~-------~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~--~~i~i~~ 100 (395)
T d1xi9a_ 30 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-------NYYGDSEGLPELRKAIVEREKRKNGVDITP--DDVRVTA 100 (395)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-------CSCCCTTCCHHHHHHHHHHHHHHHCCCCCG--GGEEEES
T ss_pred CCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHhhhhcccccccc--ccccccc
Confidence 36799998875 468999999999886522 225666788999999999999999885543 4699999
Q ss_pred ChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEE
Q 023191 121 GSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (286)
Q Consensus 121 G~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v 199 (286)
|++ ++.+++.+++++||+|++++ |+|+.|...+...|.+++.++.... +++.+|++++++.+.+ +++++
T Consensus 101 G~~~~~~~~~~~~~~~Gd~vlv~~--------P~y~~~~~~~~~~g~~~v~v~~~~~-~~~~~d~~~~~~~~~~-~~~~v 170 (395)
T d1xi9a_ 101 AVTEALQLIFGALLDPGDEILVPG--------PSYPPYTGLVKFYGGKPVEYRTIEE-EDWQPDIDDIRKKITD-RTKAI 170 (395)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEE--------SCCHHHHHHHHHTTCEEEEEEEEGG-GTSEECHHHHHHHCCT-TEEEE
T ss_pred ccchhhhhhhhhhcCCCCEEEEcC--------CccccchhhhhhcCCEEEEEecccc-ccccchHHHHHHhhcc-cccEE
Confidence 999 88879999999999999999 6666555566778877766665433 5689999999999987 89999
Q ss_pred EEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCC--C--cceEEEeCCCCCCC--CCCceEE
Q 023191 200 VAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF--E--YADVVTTTTHKSLR--GPRGAMI 268 (286)
Q Consensus 200 ~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~--~--~~D~v~~s~~K~l~--gp~gG~l 268 (286)
+++ |+| +|...+ +++|+++|++|+++++.|+++..-... .....+. . ..-+++.|++|.|+ |.+.|++
T Consensus 171 ~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~ 249 (395)
T d1xi9a_ 171 AVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYE-GEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYM 249 (395)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSS-SCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEE
T ss_pred EecCCCCCccchhhHHHHHHHHhhhhhcCeeEEecccccccccc-ccccchhhcCCCCCEEEEeCcchhcccchhhcEee
Confidence 987 766 775554 778899999999999999996543222 2111111 1 12377999999875 6667988
Q ss_pred EEec
Q 023191 269 FFRK 272 (286)
Q Consensus 269 ~~~~ 272 (286)
++..
T Consensus 250 ~~~~ 253 (395)
T d1xi9a_ 250 YFVD 253 (395)
T ss_dssp EEEC
T ss_pred EecC
Confidence 7653
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=3.2e-22 Score=176.99 Aligned_cols=206 Identities=13% Similarity=0.099 Sum_probs=150.0
Q ss_pred ceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 49 LELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 49 i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
|.|..+++ ++|+.+++++.+.+.+.. .+| +...+ +++++++++++++.+|.+.+. .+|++|+|++ ++
T Consensus 2 ~~~~~~~~df~~p~~i~eal~~~~~~~~-~~Y------~~~~g-~~lr~~ia~~~~~~~g~~~~~--~~i~it~G~~~~l 71 (361)
T d1d2fa_ 2 LPFTISDMDFATAPCIIEALNQRLMHGV-FGY------SRWKN-DEFLAAIAHWFSTQHYTAIDS--QTVVYGPSVIYMV 71 (361)
T ss_dssp EECCSSSCSSCCCHHHHHHHHHHHTTCC-CCC------CCSCC-HHHHHHHHHHHHHHSCCCCCG--GGEEEESCHHHHH
T ss_pred cCcCCCCCCCCCCHHHHHHHHHHHhCCC-CCC------CCCCC-HHHHHHHHHHHHHHhCCCCCc--ceEEEeCCHHHHH
Confidence 56777777 568999999999886522 133 34455 578999999999999985443 4699999999 88
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CC
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~ 204 (286)
..++.++++|||+|++++| .|..+...+...|..++.++.....+++.+|++++++.+.+.++|+++++ |+
T Consensus 72 ~~~~~~l~~~gd~Vlv~~P--------~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~ 143 (361)
T d1d2fa_ 72 SELIRQWSETGEGVVIHTP--------AYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQ 143 (361)
T ss_dssp HHHHHHSSCTTCEEEEEES--------CCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSC
T ss_pred HHHhhhccccccccccccc--------cccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccc
Confidence 8899999999999999994 44444434556666666666555545668999999999977688999987 66
Q ss_pred C-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC----cceEEEeCCCCCC--CCCCceEEEEecc
Q 023191 205 A-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE----YADVVTTTTHKSL--RGPRGAMIFFRKG 273 (286)
Q Consensus 205 n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~----~~D~v~~s~~K~l--~gp~gG~l~~~~~ 273 (286)
| +|... .+++|+++|+++++++|+|+++..- ...+.....+. ...+++.+++|.+ +|.+.|++++...
T Consensus 144 NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~-~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~ 221 (361)
T d1d2fa_ 144 NPTGKVWTCDELEIMADLCERHGVRVISDEIHMDM-VWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENS 221 (361)
T ss_dssp TTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTC-BCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSH
T ss_pred cccccccchhhhhhhhhhhhhhheeeeeccccccc-ccccccccccccccccccccccccccccccccccceeeecchh
Confidence 6 66444 4889999999999999999997533 22222222211 1336788888865 5667799887653
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.1e-21 Score=174.89 Aligned_cols=236 Identities=11% Similarity=0.154 Sum_probs=173.6
Q ss_pred cccccccChHHHHHHHHHHHHHHcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHH
Q 023191 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRA 101 (286)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (286)
.+++..+...+|.++.+. ++..+.|||..|.+ ++|+.+++++.+.+.+.. ..|+...+..+|++++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~-a~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~-------~~Y~~~~G~~~LReaia~~~ 76 (382)
T d1u08a_ 5 QSKLPQLGTTIFTQMSAL-AQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGA-------NQYAPMTGVQALREAIAQKT 76 (382)
T ss_dssp CCSCCCCCCCHHHHHHHH-HHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTC-------CSCCCTTCCHHHHHHHHHHH
T ss_pred hhhCCCCCCcHHHHHHHH-hccCCCEEccCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCcCCHHHHHHHHHHH
Confidence 456677788899988886 45568899999988 578899999988876522 12566688899999999999
Q ss_pred HHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCC
Q 023191 102 LEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180 (286)
Q Consensus 102 ~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 180 (286)
.+.+|.+.+. ..+|++|+|++ ++.+++++++++||.|++++ |.|+.+.......|.....++ .+.+.+
T Consensus 77 ~~~~g~~~~~-~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~--------p~y~~~~~~~~~~g~~~~~~~--~~~~~~ 145 (382)
T d1u08a_ 77 ERLYGYQPDA-DSDITVTAGATEALYAAITALVRNGDEVICFD--------PSYDSYAPAIALSGGIVKRMA--LQPPHF 145 (382)
T ss_dssp HHHHSCCCCT-TTTEEEESSHHHHHHHHHHHHCCTTCEEEEEE--------SCCTTHHHHHHHTTCEEEEEE--CCTTTC
T ss_pred HHHhCCCCCC-CceEEeccchHHHHHHHHhhcccccceEEEec--------ccccchhhhhhhccccceecc--cccccc
Confidence 9999985422 01499999999 88889999999999999999 444444444455665555554 444667
Q ss_pred CCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-----cce
Q 023191 181 YIDYDQLEKSATLFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-----YAD 250 (286)
Q Consensus 181 ~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-----~~D 250 (286)
.+|++++++.+.+ ++++++++ |+| +|...+ +++|.++|++++++++.|+.+..-............ ..-
T Consensus 146 ~~d~~~l~~~~~~-~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (382)
T d1u08a_ 146 RVDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERA 224 (382)
T ss_dssp CCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTE
T ss_pred cCCHHHHhhhhcc-CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcE
Confidence 8999999999988 89999997 666 665554 667788889999999999986543332222211111 123
Q ss_pred EEEeCCCCCC--CCCCceEEEEecchhhhhc
Q 023191 251 VVTTTTHKSL--RGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 251 ~v~~s~~K~l--~gp~gG~l~~~~~~~~~~~ 279 (286)
+++.|++|++ .|.+.|++++.+++.+...
T Consensus 225 i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~ 255 (382)
T d1u08a_ 225 VAVSSFGKTYHMTGWKVGYCVAPAPISAEIR 255 (382)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCHHHHHHHH
T ss_pred EEEeeccccccCCcccchhhhccchhHHHHH
Confidence 7899999976 4556699999887765443
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.4e-21 Score=174.19 Aligned_cols=203 Identities=15% Similarity=0.162 Sum_probs=155.4
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
.+-|++|....++.|+++|....-+. -+....++.+++++.+++++|++.+. .|+++.|++ ++.
T Consensus 20 ~~l~~pGP~~~~~~Vl~am~~~~i~H------------Rs~~f~~i~~ea~~~l~~llg~~~~~---~ii~~gsgT~a~~ 84 (388)
T d1h0ca_ 20 QLLLGPGPSNLPPRIMAAGGLQMIGS------------MSKDMYQIMDEIKEGIQYVFQTRNPL---TLVISGSGHCALE 84 (388)
T ss_dssp CEECSSSCCCCCHHHHHHHTCCCCCT------------TSHHHHHHHHHHHHHHHHHHTCCCSE---EEEESSCHHHHHH
T ss_pred CccccCCCCCCCHHHHHHhCcCCCCC------------CCHHHHHHHHHHHHHHHHHhCCCCCc---EEEEcCcHHHHHH
Confidence 46688888889999999996533221 12455678888999999999996543 588887777 888
Q ss_pred HHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC
Q 023191 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (286)
Q Consensus 127 ~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n 205 (286)
+++..++.+|+++++....+.+..... .....+... ..+..+ ....+|.+++++.+...+++++.++ .+|
T Consensus 85 ~~i~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~n 155 (388)
T d1h0ca_ 85 AALVNVLEPGDSFLVGANGIWGQRAVD------IGERIGARV--HPMTKD-PGGHYTLQEVEEGLAQHKPVLLFLTHGES 155 (388)
T ss_dssp HHHHHHCCSSCCEEECBSSHHHHHHHH------HHHHHC--C--BCCBCC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhhccCCceeeecccceeeeecc------ccccccccc--cccccC-CccccchHHHHHHhccCCcceEEEeeeee
Confidence 899999999999999885555442111 111222222 222233 4567899999888777699999987 444
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
+|.+.|+++|.++|++||+++++|++|++|..+.++..+. +|++++++|||++||.| |+++.++...+.
T Consensus 156 ~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~---~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~ 226 (388)
T d1h0ca_ 156 STGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQG---IDILYSGSQKALNAPPGTSLISFSDKAKKK 226 (388)
T ss_dssp TTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTT---CSEEEEESSSTTCCCTTCEEEEECHHHHHH
T ss_pred ccccccCHHHHHHHhhcccccceeccccccccccccccccc---cceecccccccccCCCceEEEeecHHHHHh
Confidence 7899999999999999999999999999999988887777 99999999999999999 888888765543
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.4e-22 Score=181.44 Aligned_cols=243 Identities=11% Similarity=0.046 Sum_probs=172.4
Q ss_pred hccccccccChHHHHHHHHHHHHHHcCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHH
Q 023191 22 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQK 99 (286)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (286)
+-++|++.+++..+..+... ....+.|+|..|++ ++|+.+++++.+++.+.. ..+.|+...+..+|++++.+
T Consensus 2 ~~~~r~~~~~~~~~~~~~~~-~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~-----~~~~Y~~~~G~~~LReaia~ 75 (418)
T d1w7la_ 2 LQARRLDGIDYNPWVEFVKL-ASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-----MLNQYTKTFGYPPLTKILAS 75 (418)
T ss_dssp CSCGGGTTCCCCTHHHHHHH-HHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCG-----GGGSCCCTTCCHHHHHHHHH
T ss_pred CcCccccCCCCCHHHHHHHH-hCCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCC-----cccCCCCCcCCHHHHHHHHH
Confidence 34678888888878776654 34567899999887 468899999998886521 11225667888999999999
Q ss_pred HHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccC--
Q 023191 100 RALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN-- 176 (286)
Q Consensus 100 ~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-- 176 (286)
++.+.+|.+.++. .+|++|+|++ ++.+++++++++||.|++++ |.|+.|...+...|.+.+.++....
T Consensus 76 ~~~~~~g~~~~~~-~~I~it~G~~~al~~~~~~l~~~g~~vlv~~--------p~~~~y~~~~~~~g~~~v~~~~~~~~~ 146 (418)
T d1w7la_ 76 FFGELLGQEIDPL-RNVLVTVGGYGALFTAFQALVDEGDEVIIIE--------PFFDCYEPMTMMAGGRPVFVSLKPGPI 146 (418)
T ss_dssp HHHHHHTCCCCHH-HHEEEESHHHHHHHHHHHHHCCTTCEEEEEE--------SCCTTHHHHHHHTTCEEEEEECEECC-
T ss_pred HHHHHhCCCCCcc-cceeeccCcHHHHHHHHHhhccCCceeeccc--------cccchhHHHHHHcCCEeeccccccccc
Confidence 9999988864310 2699999999 88889999999999999999 5555444445566665555543211
Q ss_pred -------CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCC
Q 023191 177 -------ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS 244 (286)
Q Consensus 177 -------~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~ 244 (286)
.+++.+|.+++.....+ ++++++++ ++| +|... .+++|+++|++|+++||+|+++..-.........
T Consensus 147 ~~~~~~~~~~~~~d~~~~~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~ 225 (418)
T d1w7la_ 147 QNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHIS 225 (418)
T ss_dssp --CCSEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC
T ss_pred cccccccccCcccchhhhhccccc-cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCC
Confidence 13467889888888877 78888887 666 66544 4778899999999999999996432222111111
Q ss_pred C--CC---cceEEEeCCCCCCCCC--CceEEEEecchhhhhcc
Q 023191 245 P--FE---YADVVTTTTHKSLRGP--RGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 245 ~--~~---~~D~v~~s~~K~l~gp--~gG~l~~~~~~~~~~~~ 280 (286)
. +. ...+++.|++|.++.| +-|++++.+++....++
T Consensus 226 ~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~ 268 (418)
T d1w7la_ 226 IASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRT 268 (418)
T ss_dssp GGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHH
T ss_pred HHHccccccccceecccCccccCCCCcccccccchhhhhhhcc
Confidence 1 11 1347799999976544 55999998876655543
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.86 E-value=9.8e-22 Score=175.99 Aligned_cols=213 Identities=13% Similarity=0.137 Sum_probs=151.0
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.|+|..+++ ++|+.+++++.+++.+.. .+|+ .+..+|++++++++++.+|++.+. .+|++|+|++
T Consensus 32 ~vi~l~~g~pdf~~p~~v~~al~~~~~~~~-~~Y~--------~g~~~Lr~aia~~~~~~~g~~~~~--~~I~vt~G~~~ 100 (394)
T d1c7na_ 32 EVVPLSVADMEFKNPPELIEGLKKYLDETV-LGYT--------GPTEEYKKTVKKWMKDRHQWDIQT--DWIINTAGVVP 100 (394)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-CSSB--------CCCHHHHHHHHHHHHHHHCCCCCG--GGEEEESSHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhCCC-cCCC--------CCCHHHHHHHHHHHHHhcCCCCCC--cceEeeccchh
Confidence 6799998887 568999999999886532 1332 234689999999999999885544 4799999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++.++++++++|||+|+++++. |..+...+...|...+.++.......+.+|.+.++.++...++|+++++
T Consensus 101 al~~~~~~~~~pgd~vi~~~p~--------~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~ 172 (394)
T d1c7na_ 101 AVFNAVREFTKPGDGVIIITPV--------YYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCS 172 (394)
T ss_dssp HHHHHHHHHCCTTCEEEECSSC--------CTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEES
T ss_pred hhhhhhccccccccccccccCc--------ccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEecc
Confidence 8888999999999999999944 4433334445665555554332324467899999988865478999998
Q ss_pred CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC------cceEEEeCCCCCC--CCCCceEEEE
Q 023191 203 ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE------YADVVTTTTHKSL--RGPRGAMIFF 270 (286)
Q Consensus 203 ~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~------~~D~v~~s~~K~l--~gp~gG~l~~ 270 (286)
|+| +|.+.+ +++|+++|++|+++||+|+++..-......+..... ..-+++.|++|++ .|.+.|++++
T Consensus 173 P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~ 252 (394)
T d1c7na_ 173 PHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIII 252 (394)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEEC
T ss_pred cccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccc
Confidence 766 775554 678899999999999999996532222221211111 1337789999975 5667577777
Q ss_pred ecc-hhhhh
Q 023191 271 RKG-VKEIN 278 (286)
Q Consensus 271 ~~~-~~~~~ 278 (286)
.++ +.+..
T Consensus 253 ~~~~i~~~~ 261 (394)
T d1c7na_ 253 KNPDIRERF 261 (394)
T ss_dssp CCHHHHHHH
T ss_pred cChhhhhhh
Confidence 653 44443
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=1.5e-21 Score=173.37 Aligned_cols=189 Identities=13% Similarity=0.082 Sum_probs=146.9
Q ss_pred CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL- 132 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~- 132 (286)
+.+..+++-++++.+.+.+.+ ++......++| +.+++++|.+. .|.++||++|+.+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~---------~~~G~~v~~~E----~~la~~~g~~~-----ai~~~sgt~Al~~al~al~ 67 (376)
T d1mdoa_ 6 SRPAMGAEELAAVKTVLDSGW---------ITTGPKNQELE----AAFCRLTGNQY-----AVAVSSATAGMHIALMALG 67 (376)
T ss_dssp CCCCCCHHHHHHHHHHHHHTC---------CSSSHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHhcCC---------CcCCHHHHHHH----HHHHHHHCcCe-----EEEeCCHHHHHHHHHHHhC
Confidence 345577888888988887643 12224566677 88888999875 488888877888899999
Q ss_pred cCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCH
Q 023191 133 LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDY 212 (286)
Q Consensus 133 ~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l 212 (286)
+++||+|++++..|.+...+. ...|..+ +.++++++++.+|+++|++++++ +||+|++. +-+|...++
T Consensus 68 ~~~gdeVi~~~~~~~~~~~ai--------~~~g~~p--v~~d~~~~~~~~d~~~l~~~i~~-~tkaIi~~-h~~G~~~~~ 135 (376)
T d1mdoa_ 68 IGEGDEVITPSMTWVSTLNMI--------VLLGANP--VMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV-HYAGAPADL 135 (376)
T ss_dssp CCTTCEEEEESSSCHHHHHHH--------HHTTCEE--EEECBCTTTCCBCHHHHHHHCCT-TEEEECCB-CGGGCCCCH
T ss_pred CCCCCEEEEecccccccccch--------hccccce--eeecccccccCCCHHHHHHhcCC-CCeEEEEe-CCCCCccch
Confidence 999999999998888876643 3566555 44467777889999999999998 89988863 337888899
Q ss_pred HHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 213 ERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 213 ~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
++|.++|+++|++||+|+||+.|....+.....+ +..++.+..+|+++++.||+++++++
T Consensus 136 ~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g~GG~i~t~~~ 195 (376)
T d1mdoa_ 136 DAIYALGERYGIPVIEDAAHATGTSYKGRHIGAR-GTAIFSFHAIKNITCAEGGIVVTDNP 195 (376)
T ss_dssp HHHHHHHHHHTCCBCEECTTCTTCEETTEETTSS-SEEEEECCTTSSSCSSSCEEEEESCH
T ss_pred hHHHHHHHhcCceEEeccchhccCeeCCeecccc-cCccccCCCcCCCCCCCCCEEEEech
Confidence 9999999999999999999999987655443332 24455666779999888999999875
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.85 E-value=2e-21 Score=174.89 Aligned_cols=207 Identities=18% Similarity=0.179 Sum_probs=151.2
Q ss_pred cCceecCCCCC------CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCC--------CCCCc
Q 023191 47 KGLELIPSENF------TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRL--------DPEKW 112 (286)
Q Consensus 47 ~~i~L~~~e~~------~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--------~~~~~ 112 (286)
+.|+|..|++. +++.+++++.+.+......+ |+...+..+|++++.+++.+.++. ++
T Consensus 31 ~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~--- 101 (412)
T d1bw0a_ 31 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNG------YFPTVGSPEAREAVATWWRNSFVHKEELKSTIVK--- 101 (412)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSS------CCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG---
T ss_pred CcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCC------CCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCC---
Confidence 46899988762 35777888877665422223 455677889999999999988643 33
Q ss_pred ceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHh
Q 023191 113 GVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 191 (286)
Q Consensus 113 ~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i 191 (286)
.+|++|+|++ ++..++.++++|||+|++++ |.|+.|...+...|.+++.++++.+ +++.+|++++++.+
T Consensus 102 -~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~--------P~y~~~~~~~~~~G~~~~~v~~~~~-~~~~~~~~~l~~~~ 171 (412)
T d1bw0a_ 102 -DNVVLCSGGSHGILMAITAICDAGDYALVPQ--------PGFPHYETVCKAYGIGMHFYNCRPE-NDWEADLDEIRRLK 171 (412)
T ss_dssp -GGEEEESHHHHHHHHHHHHHCCTTCEEEEEE--------SCCTHHHHHHHHTTCEEEEEEEEGG-GTTEECHHHHHHHC
T ss_pred -CeEEEecccccchhhhhhhhhccccceeeee--------ccchhhhhhhhccCccccccccccc-cccchhhHHHHhhh
Confidence 3699999999 88879999999999999999 5555555566778887777775533 56789999999988
Q ss_pred hhcCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCC-------CCc--ceEEEeCCC
Q 023191 192 TLFRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP-------FEY--ADVVTTTTH 257 (286)
Q Consensus 192 ~~~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~-------~~~--~D~v~~s~~ 257 (286)
.+ ++++++++ |+| +|... .+++|+++|++|+++||+|+++. .....+..+.. +.. .-+++.|++
T Consensus 172 ~~-~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~S 249 (412)
T d1bw0a_ 172 DD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYA-GMVFKGKDPNATFTSVADFETTVPRVILGGTA 249 (412)
T ss_dssp CT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTT-TCBCCSSCTTCCCCCTTSSCCSCCEEEEEEST
T ss_pred hc-cccccccccccccccccchhhhccccccccccCCeeeechhhHH-HhccCCCCCccccccccccccccccccccccC
Confidence 87 88999887 666 66544 47788999999999999999964 33322221111 011 126678899
Q ss_pred CCCC--CCCceEEEEecch
Q 023191 258 KSLR--GPRGAMIFFRKGV 274 (286)
Q Consensus 258 K~l~--gp~gG~l~~~~~~ 274 (286)
|.++ |+|.|++++.++.
T Consensus 250 K~~~~~G~RvG~~~~~~~~ 268 (412)
T d1bw0a_ 250 KNLVVPGWRLGWLLYVDPH 268 (412)
T ss_dssp TTTSCGGGCCEEEEEECTT
T ss_pred ccCccCCCCcccccccchh
Confidence 9774 6666999997654
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=2.3e-21 Score=170.93 Aligned_cols=206 Identities=13% Similarity=0.065 Sum_probs=141.8
Q ss_pred ceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHH
Q 023191 49 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQ 127 (286)
Q Consensus 49 i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~ 127 (286)
+-|++|..++++.|++||.+...++. .+...++.+.+++.+++++|++++. ..+++++|+| ++.+
T Consensus 2 ~l~~pGP~~~~~~V~~A~~~~~~~~~------------~~~~~~~~~~~r~~l~~l~~~~~~~--~~i~~t~s~T~~~~~ 67 (361)
T d1m32a_ 2 LLLTPGPLTTSRTVKEAMLFDSCTWD------------DDYNIGVVEQIRQQLTALATASEGY--TSVLLQGSGSYAVEA 67 (361)
T ss_dssp EECSSSSCCCCHHHHHTTCCCCCTTS------------HHHHTTTHHHHHHHHHHHHCSSSSE--EEEEEESCHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhhhhccCCC------------cHHHHHHHHHHHHHHHHHhCCCCCC--EEEEECCCHHHHHHH
Confidence 34678877889999999875432211 1223344566889999999997654 2366777767 7777
Q ss_pred HHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-
Q 023191 128 VYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA- 205 (286)
Q Consensus 128 ~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n- 205 (286)
++.++..+++.+++....+... ..+. .....+.....+..... .....+.+.......+ +++++.++ .+|
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 139 (361)
T d1m32a_ 68 VLGSALGPQDKVLIVSNGAYGA--RMVE----MAGLMGIAHHAYDCGEV-ARPDVQAIDAILNADP-TISHIAMVHSETT 139 (361)
T ss_dssp HHHHSCCTTCCEEEEESSHHHH--HHHH----HHHHHTCCEEEEECCTT-SCCCHHHHHHHHHHCT-TCCEEEEESEETT
T ss_pred HHHHhhhhccccceeeehhhhh--hHHH----Hhhhhhccccccccccc-CCccchhhHHHHHhcc-CccceEEEeeecc
Confidence 8899999988888776333221 1111 01112222222321111 1122333333444445 88999887 333
Q ss_pred CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 206 YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 206 ~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
+|...|+++|.++|++||+++++|++|++|.++.++.... +|++++|+|||++||.| |+++++++..+..+
T Consensus 140 tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~---~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~ 211 (361)
T d1m32a_ 140 TGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALH---IDYLISSANKCIQGVPGFAFVIAREQKLAACK 211 (361)
T ss_dssp TTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTT---CSEEEEESSSTTCCCSSEEEEEEEHHHHTTCT
T ss_pred cccchhhhhhhhhhcccceeeEeecccccCcccccccccc---cceEEeeecccccCCCCceEEEechhhhhhhc
Confidence 8899999999999999999999999999999998887777 99999999999999999 99999987655443
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=2.9e-21 Score=172.37 Aligned_cols=205 Identities=16% Similarity=0.154 Sum_probs=147.1
Q ss_pred cCceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.|+|..|++ ++|+.+++++.+...+ ...|+...+..+|++++.+++.+.+|++.+. .+|++|+|++
T Consensus 29 ~vi~l~~G~p~~~~p~~~~~al~~~~~~--------~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~--~~I~it~G~~~ 98 (389)
T d2gb3a1 29 RIHHLNIGQPDLKTPEVFFERIYENKPE--------VVYYSHSAGIWELREAFASYYKRRQRVDVKP--ENVLVTNGGSE 98 (389)
T ss_dssp EEEECSSCCCCSCCCTHHHHHHHHTCCS--------SCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG--GGEEEESHHHH
T ss_pred CEEECCCCCCCCCCCHHHHHHHHhcCCC--------CCCCCCCcCCHHHHHHHHHHHHHhcCCCccc--ceEEecccccc
Confidence 6699999988 4688889988765432 1225666788999999999999998875433 4699999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.+++++||.|++++ |.|+.+...+...|.....++. +.+++..+.+.+.+.+.+ ++++++++
T Consensus 99 ~l~~~~~~l~~~gd~V~i~~--------P~y~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~l~n 167 (389)
T d2gb3a1 99 AILFSFAVIANPGDEILVLE--------PFYANYNAFAKIAGVKLIPVTR--RMEEGFAIPQNLESFINE-RTKGIVLSN 167 (389)
T ss_dssp HHHHHHHHHCCTTCEEEEEE--------SCCTHHHHHHHHHTCEEEEEEC--CGGGTSCCCTTGGGGCCT-TEEEEEEES
T ss_pred cccccccccccCCCeEEEeC--------CCCccccccccccCcccccccc--ccccccchhhhhhhhccc-CccEEEeCC
Confidence 88879999999999999999 5554444455566665555553 323455555666666666 88999997
Q ss_pred CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC---cceEEEeCCCCCCCCC--CceEEEEecc
Q 023191 203 ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE---YADVVTTTTHKSLRGP--RGAMIFFRKG 273 (286)
Q Consensus 203 ~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~---~~D~v~~s~~K~l~gp--~gG~l~~~~~ 273 (286)
|+| +|... .+++|+++|++|+++||+|+++.. ....+....... ...+++.|++|.++.| +-|+++++++
T Consensus 168 P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~-~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~ 246 (389)
T d2gb3a1 168 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSE-IVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNE 246 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCH
T ss_pred CCccccccchHHHHHHHHhhcccCCEEEEEeccccc-cccccccccccccccccccccccccccccCcccceeeeeccch
Confidence 766 67544 478999999999999999999643 332222211111 2457788999977554 5599998765
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.83 E-value=5.7e-21 Score=171.24 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=158.5
Q ss_pred chhhccccccccChHHHHHHHHHHHHHHcCceecCCCCC----CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHH
Q 023191 19 WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENF----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE 94 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~----~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 94 (286)
+.++++++.+.+.++.++++.+. ..+++.|+|..|.+. +.+.+.+++.+.+...- .....|+...+..+|+
T Consensus 3 ~~~~~~~~~~~~~~s~ire~~~~-~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lR 77 (403)
T d1wsta1 3 FDSFFSEKAMLMKASEVRELLKL-VETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHA----DKALQYGTTKGFTPLR 77 (403)
T ss_dssp GGGGCCHHHHHCCCHHHHHHHHH-HTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSH----HHHHSCCCSSCCHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHH-hCCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCc----ccccCCCCCcCCHHHH
Confidence 56777778888877777766553 345688999887652 34566666766654310 0112356678889999
Q ss_pred HHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEec
Q 023191 95 SLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPY 173 (286)
Q Consensus 95 ~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 173 (286)
+++.+++.+.+|.+.+. .+|++|+|++ ++..++.+++++||+|++++ |+|..+...+...|..+..++.
T Consensus 78 ~aia~~l~~~~g~~~~~--~~I~it~G~~~al~~~~~~l~~~gd~v~~~~--------P~y~~~~~~~~~~g~~~~~v~~ 147 (403)
T d1wsta1 78 LALARWMEKRYDIPMSK--VEIMTVAGSQQALDLIGRVFLNPGDPIVVEA--------PTYLAAIQAFKYYDPEFISIPL 147 (403)
T ss_dssp HHHHHHHHHHHCCCCTT--CEEEEESSHHHHHHHHHHHHCCTTCEEEEEE--------SCCHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCCh--HHeeecccchHHHHHHHHHHhhcCCccccCC--------CcchhhhHHHhhccccceeEee
Confidence 99999999988875443 4799999999 88889999999999999999 5555444455667766666664
Q ss_pred ccCCCCCCCCHHHH-HHHhhh-c-CCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCC
Q 023191 174 RLNESTGYIDYDQL-EKSATL-F-RPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP 245 (286)
Q Consensus 174 ~~~~~~~~~d~e~l-~~~i~~-~-~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~ 245 (286)
+.+ ..+..+.... ++.... . .+.+++++ ++| +|... .+++|+++|++|+++||+|+++.. ....+....+
T Consensus 148 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~-l~~~~~~~~~ 225 (403)
T d1wsta1 148 DDK-GMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSE-LRYSGEPTPP 225 (403)
T ss_dssp ETT-EECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTT-CBCSSCCCCC
T ss_pred ccc-CCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhh-eecCCCCCCc
Confidence 422 1111122222 222222 1 23344455 555 66554 467889999999999999999642 2222211111
Q ss_pred CC-----cceEEEeCCCCCCC-CCCceEEEEecchhhhhc
Q 023191 246 FE-----YADVVTTTTHKSLR-GPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 246 ~~-----~~D~v~~s~~K~l~-gp~gG~l~~~~~~~~~~~ 279 (286)
+. ...+++.|++|+++ |.+.|++++++++.+...
T Consensus 226 ~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~~i~~~~ 265 (403)
T d1wsta1 226 IKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPHLIRKME 265 (403)
T ss_dssp GGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHHHHHHHH
T ss_pred ccccCCCCcEEEEccccceecCcccccccccchHHHHHHH
Confidence 11 24588999999873 335599999887665443
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=8.7e-20 Score=162.18 Aligned_cols=204 Identities=10% Similarity=0.059 Sum_probs=147.3
Q ss_pred eecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC--CCCcceeEEeCCChH-HHH
Q 023191 50 ELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 50 ~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~~~~~v~~~sG~~-a~~ 126 (286)
-|+||..+.++.|++||.....+.+ .....++.+.+++.++++++.. .+. ..|++|+|+| ++.
T Consensus 6 l~~PGP~~v~~~V~~Am~~~~~~hr------------~~~f~~~~~~~~~~~r~~~~~~~~~~~--~~i~~t~sgT~a~~ 71 (382)
T d2bkwa1 6 LLIPGPIILSGAVQKALDVPSLGHT------------SPEFVSIFQRVLKNTRAVFKSAAASKS--QPFVLAGSGTLGWD 71 (382)
T ss_dssp ECSSSSCCCCHHHHHTTSCCCCCTT------------SHHHHHHHHHHHHHHHHHTTCCGGGTC--EEEEEESCTTHHHH
T ss_pred ccCCCCCCCCHHHHHHhCcccCCCC------------cHHHHHHHHHHHHHHHHHHhhhcCCCC--eEEEEeCcHHHHHH
Confidence 3678888899999999864322211 1234455556778888888751 111 3588877777 777
Q ss_pred HHHHHhc---CCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 127 QVYTALL---KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 127 ~~l~a~~---~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
+++.+++ +|||+|++....+.+..... .+...+.....+. ..+.+...+.+.+++.+...++++++++
T Consensus 72 ~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 143 (382)
T d2bkwa1 72 IFASNFILSKAPNKNVLVVSTGTFSDRFAD------CLRSYGAQVDVVR--PLKIGESVPLELITEKLSQNSYGAVTVTH 143 (382)
T ss_dssp HHHHHHSCTTCSCCEEEEECSSHHHHHHHH------HHHHTTCEEEEEC--CSSTTSCCCHHHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHHhcCCCCceEEEEechhhhhhhh------hcccccccccccc--ccCCCCccchhHHHHHhhhccchheeeee
Confidence 7888885 68999999885554432111 1222333333332 2224457889999988877688999886
Q ss_pred -CCCCCCccCHHHHHHHHHhc--CCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 203 -ASAYARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 203 -~~n~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
.+++|...|++++.++|+++ ++++++|++|++|.++.++..+. +|++++|+|||++||.| |++++++++.+..
T Consensus 144 ~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~g---iD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~ 220 (382)
T d2bkwa1 144 VDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWG---VDFALTASQKAIGAPAGLSISLCSSRFMDYA 220 (382)
T ss_dssp EETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTT---CSEEEEESSSTTCCCSCEEEEEECHHHHHHH
T ss_pred ccccccccccchhhhhhccccccceeeeeecccccccccccccccC---eeEEeecccccCcCCCchhhhhccHHHHhhh
Confidence 33378889999999998876 59999999999999999888877 99999999999999999 9999998875443
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.81 E-value=3.2e-19 Score=158.61 Aligned_cols=203 Identities=13% Similarity=0.123 Sum_probs=153.4
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
.+-|++|...++++|++||.....+.+ .....++.+.+++.+++++|++... .|+++.|++ ++.
T Consensus 18 ~~l~~PGP~~~~~~V~~Am~~~~~~hr------------~~ef~~i~~~~r~~L~~ll~~~~~~---~i~~~gsgT~a~e 82 (388)
T d2ch1a1 18 KIMMGPGPSNCSKRVLTAMTNTVLSNF------------HAELFRTMDEVKDGLRYIFQTENRA---TMCVSGSAHAGME 82 (388)
T ss_dssp CBCCSSSSCCCCHHHHHHTTSCCCCTT------------CHHHHHHHHHHHHHHHHHHTCCCSC---EEEESSCHHHHHH
T ss_pred ceeeeCCCCCCCHHHHHHhCcCCCCCC------------CHHHHHHHHHHHHHHHHHhCCCCCe---EEEEcCcHHHHHH
Confidence 356788888889999999876543211 1455677788999999999996543 466676777 888
Q ss_pred HHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC
Q 023191 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA 205 (286)
Q Consensus 127 ~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n 205 (286)
+++.+++.+|+++++....+.+..... .....+...+.+. .. +....+.+.+++.+...+++++.++ .+|
T Consensus 83 a~~~~l~~~~~~vl~~~~g~~~~~~~~------~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~t 153 (388)
T d2ch1a1 83 AMLSNLLEEGDRVLIAVNGIWAERAVE------MSERYGADVRTIE--GP-PDRPFSLETLARAIELHQPKCLFLTHGDS 153 (388)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHHHHH------HHHHTTCEEEEEE--CC-TTSCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHHhccccccccccccccccccchh------hhhhhcccccccc--cc-cccccchhhhhhhhccCCcceeeeeeccc
Confidence 899999999999999874443332111 1222333344443 22 3456788888888776689999886 333
Q ss_pred -CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhh
Q 023191 206 -YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEI 277 (286)
Q Consensus 206 -~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~ 277 (286)
+|...|+++|.++|+++++++++|++|++|..+.++..+. +|+++++.|||++||.| |+++.+++..+.
T Consensus 154 ~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~---~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~ 224 (388)
T d2ch1a1 154 SSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWE---IDAVYTGAQKVLGAPPGITPISISPKALDV 224 (388)
T ss_dssp TTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTT---CCEEECCCC-CCCCCSSCEEEEECHHHHHH
T ss_pred ccccccchhhhcchhccccceeeeeeeecccccccchhccC---ceEEEEccccccCCCCeEEEEeccHHHHHh
Confidence 7788999999999999999999999999999998888777 99999999999999999 999998775543
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=4.1e-20 Score=163.83 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=118.7
Q ss_pred HHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEE-ec-cCCCCcccCccccccccccccceeeeEEEe
Q 023191 96 LCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIM-AL-DLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (286)
Q Consensus 96 ~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl-~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (286)
.+++...+.++.+..+ ++++++|++ ++++++.++. +||.|+ ++ .+.|+++ ..++.+.|.++ +
T Consensus 54 ~l~~~~~~~~~~~~~e---~~~~~~~~~~a~~~~l~al~-~~~~vi~~~~~~~~~~~--------~~~~~l~g~~~--v- 118 (366)
T d2aeua1 54 KVNEYGLKHLGGDEND---KCVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSI--------ERSCKIVNAKY--F- 118 (366)
T ss_dssp HHHHHHHHHHTCCTTE---EEEEESSHHHHHHHHHHHHC-CSEEEEECSSSSCCTHH--------HHHHHHTTCEE--E-
T ss_pred HHHHHHHHHccCCCcc---EEEEeCCHHHHHHHHHHHhC-CCCEEEEecCCCcchhH--------HHHHHhcCCeE--E-
Confidence 3445666667765543 688888888 8888888865 555554 43 3344443 33566777543 3
Q ss_pred cccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCC--CccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC-c
Q 023191 173 YRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYA--RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE-Y 248 (286)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n~g--~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~-~ 248 (286)
+.+ |++++++.+++ +||+|+++ ++|.. ...++++|+++|++||+++++|++|+.+.......+..+. +
T Consensus 119 -~~~------d~e~l~~~i~~-~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~ 190 (366)
T d2aeua1 119 -ESD------KVGEILNKIDK-DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLG 190 (366)
T ss_dssp -EES------CHHHHHTTCCT-TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT
T ss_pred -CCC------CHHHHHHhcCC-CceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcC
Confidence 222 89999999998 99999997 65632 4568999999999999999999999877665444443333 6
Q ss_pred ceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 249 ADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 249 ~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
+|++++|+||+++||++|++++++++.+..+
T Consensus 191 ~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~ 221 (366)
T d2aeua1 191 ADLVVTSTDKLMEGPRGGLLAGKKELVDKIY 221 (366)
T ss_dssp CSEEEEETTSSSSSCSCEEEEEEHHHHHHHH
T ss_pred ceEEEecccccccccceeEEEecHHHHHHHH
Confidence 9999999999999999999999999876655
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.81 E-value=1.5e-19 Score=162.01 Aligned_cols=228 Identities=13% Similarity=0.096 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHH-HHcCceecCCC----C---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHH
Q 023191 33 EIADIIEHEKAR-QWKGLELIPSE----N---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEA 104 (286)
Q Consensus 33 ~~~~~~~~~~~~-~~~~i~L~~~e----~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (286)
-++..+....+. +.+.|||..|. + ++.+.|++++...+.+..+ +.|++..|..+|++++.+++.+.
T Consensus 14 ~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~------~~Y~~~~G~~~lr~aia~~~~~~ 87 (401)
T d7aata_ 14 PILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMD------KEYLPIAGLADFTRASAELALGE 87 (401)
T ss_dssp HHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCC------CCCCCTTCCHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHhCCCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCC------CCCCCCCCCHHHHHHHHHHHhcc
Confidence 345554443221 13569999872 2 3458888888777655322 23677789999999999999888
Q ss_pred CCCCCCCcceeEEeCCC--hH----HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCC
Q 023191 105 FRLDPEKWGVNVQSLSG--SP----SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNES 178 (286)
Q Consensus 105 ~g~~~~~~~~~v~~~sG--~~----a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 178 (286)
++...++ ..|+++.| ++ ++..+++++++|||+|++++ |.|+.|...+...|.+++.+|+..+ +
T Consensus 88 ~~~~~~~--~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~--------P~y~~y~~~~~~~g~~~~~~~~~~~-~ 156 (401)
T d7aata_ 88 NSEAFKS--GRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPK--------PSWGNHTPIFRDAGLQLQAYRYYDP-K 156 (401)
T ss_dssp TCHHHHT--TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEE--------SCCTTHHHHHHHTTCEEEEEECEET-T
T ss_pred CCcccCc--CceEEeccchHHHHHHHHHHhhHhhcCCCceEEEec--------CCCcchhhHHHHcCCeEEEEecccc-c
Confidence 7762211 13444333 22 44556778899999999999 6666666567788888877876433 5
Q ss_pred CCCCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC-----
Q 023191 179 TGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF----- 246 (286)
Q Consensus 179 ~~~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~----- 246 (286)
++.+|++.+.+.+.. .++++++++ |+| +|... .+++|+++|++|+++||+|+++.. ....+......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~-l~~~~~~~~~~~~~~~ 235 (401)
T d7aata_ 157 TCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQG-FASGDINRDAWALRHF 235 (401)
T ss_dssp TTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTT-TTTSCHHHHTHHHHHH
T ss_pred cccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchh-hhcCCcccchhhhhhh
Confidence 678899999887742 267888887 777 77554 477999999999999999999643 22211100000
Q ss_pred ---CcceEEEeCCCCCC--CCCCceEEEEecchhhhh
Q 023191 247 ---EYADVVTTTTHKSL--RGPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 247 ---~~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~~ 278 (286)
...-+++.+++|.+ .|++.|++.+..+..+..
T Consensus 236 ~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~ 272 (401)
T d7aata_ 236 IEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEA 272 (401)
T ss_dssp HHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHH
T ss_pred hhhhcccceeEeccccceeeccccceeecchHHHHHH
Confidence 00226677888866 666779999988766543
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.3e-20 Score=169.92 Aligned_cols=242 Identities=14% Similarity=0.069 Sum_probs=158.2
Q ss_pred chhhccccccccChHHHHHHHHHHHHHHcCceecCCCCC----CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHH
Q 023191 19 WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENF----TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE 94 (286)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~----~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 94 (286)
+++.+++.-+.+.++.++.+.+. ....+.|+|..|.+. +.+.+.+++.+.+..... ....|+...|..+|+
T Consensus 12 ~~~~~s~~~~~~~~s~ir~~~~~-~~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~LR 86 (420)
T d1vp4a_ 12 LEGKISKIGQNMKSSIIREILKF-AADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYH----YTLQYSTTEGDPVLK 86 (420)
T ss_dssp HHHHCCHHHHTCCCCCHHHHTTT-TTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHH----HHTSCCCTTCCHHHH
T ss_pred HHHHHhHHHHhCCCcHHHHHHHH-hCCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCc----cccCCCCCcCCHHHH
Confidence 34445555455566666655443 234588999988752 345556666665543110 112256668889999
Q ss_pred HHHHHHHHHHCCCC-CCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEe
Q 023191 95 SLCQKRALEAFRLD-PEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (286)
Q Consensus 95 ~~~~~~~~~~~g~~-~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (286)
+++.+++.+.+|++ .+. .+|++|+|++ ++.+++.++++|||+|++++ |.|+.+...+...|..++.+|
T Consensus 87 ~aia~~~~~~~g~~~~~~--~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~--------P~y~~~~~~~~~~g~~~~~~~ 156 (420)
T d1vp4a_ 87 QQILKLLERMYGITGLDE--DNLIFTVGSQQALDLIGKLFLDDESYCVLDD--------PAYLGAINAFRQYLANFVVVP 156 (420)
T ss_dssp HHHHHHHHHHHCCCSCCG--GGEEEEEHHHHHHHHHHHHHCCTTCEEEEEE--------SCCHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCH--HHeEeccchhhhHHHHHHhhhcccccccccc--------ccccchhHHHHHHhhhccccc
Confidence 99999999998874 222 4699999999 88889999999999999999 555555545667777666666
Q ss_pred cccCCCCCCCCHHHHHHHhhh-------cCCc-EEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEecccccccccc
Q 023191 173 YRLNESTGYIDYDQLEKSATL-------FRPK-LIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAA 239 (286)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~~-------~~tk-~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~ 239 (286)
.+ ...+|++.++..+.+ .+++ +++++ ++| +|... .+++|+++|++|++++|+|+++.. ....
T Consensus 157 --~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~-l~~~ 231 (420)
T d1vp4a_ 157 --LE--DDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGA-LRYE 231 (420)
T ss_dssp --EE--TTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTT-CBCS
T ss_pred --cc--ccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhh-cccc
Confidence 33 235677777654421 1233 44455 556 66444 578999999999999999999643 2222
Q ss_pred CCCCCCC-----CcceEEEeCCCCCC-CCCCceEEEEecchhhhhcc
Q 023191 240 GVIPSPF-----EYADVVTTTTHKSL-RGPRGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 240 ~~~~~~~-----~~~D~v~~s~~K~l-~gp~gG~l~~~~~~~~~~~~ 280 (286)
+....+. ....+++.+++|++ .|.+.|++++++++.+...+
T Consensus 232 ~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~~~~i~~l~~ 278 (420)
T d1vp4a_ 232 GETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQ 278 (420)
T ss_dssp SCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHH
T ss_pred CcccccccccccccceeEEeccccccccccccccccccchhhhhhhh
Confidence 2111111 12446788888865 45566999999887765543
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.80 E-value=8.7e-19 Score=155.00 Aligned_cols=204 Identities=13% Similarity=0.067 Sum_probs=150.5
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNF 126 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~ 126 (286)
.+-+++|..+.|+.|++||....-+.+ .....++-+.+++.+++++|++.+. .|++++|++ ++.
T Consensus 19 ~~l~~PGP~~v~~~Vl~am~~~~~~hr------------~~ef~~i~~~~r~~l~~ll~~~~~~---~i~~~g~gT~~~~ 83 (377)
T d1vjoa_ 19 RLLLGPGPSNAHPSVLQAMNVSPVGHL------------DPAFLALMDEIQSLLRYVWQTENPL---TIAVSGTGTAAME 83 (377)
T ss_dssp CEECSSSCCCCCHHHHHHHSSCCCCTT------------SHHHHHHHHHHHHHHHHHHTCCCSC---EEEESSCHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhCcCCCCCC------------CHHHHHHHHHHHHHHHHHhCCCCCe---EEEEcCcHHHHHH
Confidence 356788888899999999965332211 1345677788999999999996554 588877777 888
Q ss_pred HHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-C-C
Q 023191 127 QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-A-S 204 (286)
Q Consensus 127 ~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~-~ 204 (286)
+++..++.+|+++++....|.+..... .....+.....+. .. .+...+.+..+....+.+++++.++ . +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 154 (377)
T d1vjoa_ 84 ATIANAVEPGDVVLIGVAGYFGNRLVD------MAGRYGADVRTIS--KP-WGEVFSLEELRTALETHRPAILALVHAET 154 (377)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHHHHH------HHHHTTCEEEEEE--CC-TTCCCCHHHHHHHHHHHCCSEEEEESEET
T ss_pred HHHHhccccccccceeeechhhhhhhh------hhhhhcccccccc--cC-CCCcccchhhhhhhhcCcceeeeeeeeec
Confidence 899999999999999886554432111 1112222222232 22 3344566666665555589998886 3 3
Q ss_pred CCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 205 AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 205 n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
.+|...|+++|.++||++|.++++|++|+.|..+.++..+. +|+++++.|||++||.| |+++.++...+..
T Consensus 155 ~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~---~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~ 226 (377)
T d1vjoa_ 155 STGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWG---VDLAYSCSQKGLGCSPGASPFTMSSRAIEKL 226 (377)
T ss_dssp TTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTT---CSEEECCSSSTTCSCSSCEEEEECHHHHHHH
T ss_pred cceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccc---cceeeecccccccCCCEEEEecchhhHHhhh
Confidence 37889999999999999999999999999999988888777 99999999999999999 8888887655433
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.80 E-value=1.5e-19 Score=163.27 Aligned_cols=222 Identities=11% Similarity=0.047 Sum_probs=144.5
Q ss_pred cCceecCCCCCCC-HHHHHHhccccccC-CCCCC---CCCcccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEeC
Q 023191 47 KGLELIPSENFTS-VSVMQAVGSVMTNK-YSEGY---PGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSL 119 (286)
Q Consensus 47 ~~i~L~~~e~~~~-~~v~~a~~~~l~~~-~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~~ 119 (286)
+.|+|..+||.+. +.+.+.+.+..... ..++. .+...|++..+..+|++++.+++.+.+|. +.+. .+|++|
T Consensus 37 G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~--e~Ivit 114 (428)
T d1iaya_ 37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDP--ERVVMA 114 (428)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCT--TSCEEE
T ss_pred ceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCCh--hhEEEc
Confidence 4689999999754 55555444321110 11111 11234677788899999999999999874 2222 359999
Q ss_pred CChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccc-cceeeeEEEecccCCCCCCCCHHHHHHHhh-----
Q 023191 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS-AVSIFFETMPYRLNESTGYIDYDQLEKSAT----- 192 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~----- 192 (286)
+|++ ++.+++.++++|||.|++++|.|+.+.. .+. ..|.+++.++++.. +++.+|.+++++.+.
T Consensus 115 ~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~--------~~~~~~g~~~v~v~~~~~-~~~~~d~~~~~~~~~~~~~~ 185 (428)
T d1iaya_ 115 GGATGANETIIFCLADPGDAFLVPSPYYPAFNR--------DLRWRTGVQLIPIHCESS-NNFKITSKAVKEAYENAQKS 185 (428)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH--------HTTTTTCCEEEEECCCTT-TTTCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEccCCchHHHH--------HHHHhcCCeEEEeecccc-cccccccccccchhhhhhcc
Confidence 9999 8888999999999999999965554432 222 23555544543322 467999998876542
Q ss_pred hcCCcEEEEc-CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCC----------CCC--cceEEEeC
Q 023191 193 LFRPKLIVAG-ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPS----------PFE--YADVVTTT 255 (286)
Q Consensus 193 ~~~tk~v~i~-~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~----------~~~--~~D~v~~s 255 (286)
..++++++++ |+| +|...+ +++|+++|++|+++||+|++|..-......+.. ... ...+++.|
T Consensus 186 ~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s 265 (428)
T d1iaya_ 186 NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYS 265 (428)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEE
T ss_pred CCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEec
Confidence 1256788887 777 675554 788999999999999999997643222111100 000 12377999
Q ss_pred CCCCCC--CCCceEEEEec-chhhhhc
Q 023191 256 THKSLR--GPRGAMIFFRK-GVKEINK 279 (286)
Q Consensus 256 ~~K~l~--gp~gG~l~~~~-~~~~~~~ 279 (286)
++|.|+ |.+.|+++..+ .+....+
T Consensus 266 ~SK~~~~~GlRiG~~~~~~~~l~~~~~ 292 (428)
T d1iaya_ 266 LSKDMGLPGFRVGIIYSFNDDVVNCAR 292 (428)
T ss_dssp STTTSSCGGGCEEEEEESCHHHHHHHH
T ss_pred CCCcccCCCcccccccccccchhhhhh
Confidence 999874 55679999855 4555444
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.3e-18 Score=157.86 Aligned_cols=223 Identities=12% Similarity=0.060 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHH-cCceecCC-CCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCC
Q 023191 33 EIADIIEHEKARQW-KGLELIPS-ENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPE 110 (286)
Q Consensus 33 ~~~~~~~~~~~~~~-~~i~L~~~-e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~ 110 (286)
..++.+.++..... ..+||... ...+++++.+.+.+.+..++.+. -..+...++|..+.+++++++|.+..
T Consensus 39 ~~~~~i~d~l~~dg~~~~n~asf~~t~~~~~~~~l~~~~~~~N~~~~-------~~~P~~~~lE~~~v~~la~L~~~p~~ 111 (450)
T d1pmma_ 39 VAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDK-------EEYPQSAAIDLRCVNMVADLWHAPAP 111 (450)
T ss_dssp HHHHHHHHHGGGSCCGGGBCSCCSCCCCCHHHHHHHHHTTTCBTTCT-------TTSHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhccCCCccccccccccCCCCHHHHHHHHHHHhcCCCCc-------ccCccHHHHHHHHHHHHHHHhCCCcc
Confidence 35566655431111 12455432 22568999999988876644221 22355679999999999999998542
Q ss_pred Ccc-eeEEeCCChH-HHHHHHHHhc-----------CCCC-eEEeccCCCCcccCccccccccccccceeeeEEEecccC
Q 023191 111 KWG-VNVQSLSGSP-SNFQVYTALL-----------KPHD-RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN 176 (286)
Q Consensus 111 ~~~-~~v~~~sG~~-a~~~~l~a~~-----------~~Gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 176 (286)
..+ ..=.+|+|++ +++.++.+.- .+++ .++++...|.++ .+.+.+.|.+.+.+| .+
T Consensus 112 ~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~--------~Kaa~~~gi~~~~v~--~~ 181 (450)
T d1pmma_ 112 KNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW--------HKFARYWDVELREIP--MR 181 (450)
T ss_dssp TTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHH--------HHHHHHTTCEEEECC--CB
T ss_pred ccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHH--------HHHHHHcCCCceEee--ec
Confidence 110 1246778888 7776555431 2333 355555444333 235567787777776 45
Q ss_pred CCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHH------HhcCCEEEEeccccccccccCCCC----C
Q 023191 177 ESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVC------NKQKAIMLADMAHISGLVAAGVIP----S 244 (286)
Q Consensus 177 ~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia------~~~~~~vivD~a~~~g~~~~~~~~----~ 244 (286)
++++.+|+++|++++++ +|.+|+.+ .++ +|...|+++|.++| +++|+|++||+|++.+..+..... .
T Consensus 182 ~~~~~~d~~~L~~~i~~-~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~ 260 (450)
T d1pmma_ 182 PGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF 260 (450)
T ss_dssp TTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST
T ss_pred CCCCcCcHHHHHHHhhh-CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhh
Confidence 45699999999999998 88888876 555 78899998887775 568999999999877655432211 2
Q ss_pred CCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 245 PFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 245 ~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
.+.++|++++|+|||+++|.| |++++|++
T Consensus 261 ~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~ 290 (450)
T d1pmma_ 261 RLPRVKSISASGHKFGLAPLGCGWVIWRDE 290 (450)
T ss_dssp TSTTEEEEEEETTTTTCCCSSCEEEEESSG
T ss_pred cccceeEeecChhhccCCCCCeeEEEecCh
Confidence 234799999999999999999 99999875
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.79 E-value=4.2e-19 Score=158.22 Aligned_cols=188 Identities=12% Similarity=0.164 Sum_probs=141.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-cCCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPH 136 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~~~G 136 (286)
...+.++++.+.+.+.. .++.....+.++| +++++++|.+. .|.+.||++|+.++++++ +++|
T Consensus 11 ~~~~~~~~~~~~l~~g~-------~~~~~g~~v~~fE----~~~a~~~g~~~-----~v~~~SGt~Al~lal~~l~~~~g 74 (384)
T d1b9ha_ 11 YDDAERNGLVRALEQGQ-------WWRMGGDEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG 74 (384)
T ss_dssp CCHHHHHHHHHHHHTSC-------CBTTTCSHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHcCC-------eeecCCHHHHHHH----HHHHHHHCcCe-----EEEeCCHHHHHHHHHHHcCCCCC
Confidence 45667788888887631 0112224566777 78888999886 488888888888899988 8999
Q ss_pred CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCccCHHHHH
Q 023191 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIR 216 (286)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~~l~~I~ 216 (286)
|+|+++...+.+... .+...|.++ +.+++++.++.+|++.+++.+.+ +|++|++ .+-.|...++++|.
T Consensus 75 deVi~p~~t~~a~~~--------ai~~~g~~p--~~~d~~~~~~~~d~~~~~~~i~~-~tk~i~~-~~~~g~~~d~~~i~ 142 (384)
T d1b9ha_ 75 TEVIVPAFTFISSSQ--------AAQRLGAVT--VPVDVDAATYNLDPEAVAAAVTP-RTKVIMP-VHMAGLMADMDALA 142 (384)
T ss_dssp CEEEEESSSCTHHHH--------HHHHTTCEE--EEECBCTTTCCBCHHHHHHHCCT-TEEEECC-BCGGGCCCCHHHHH
T ss_pred CEEEEeccccccccc--------ccccccccc--ccccccccccccchhhhcccccc-ccccccc-ccccccccccccch
Confidence 999999977776654 334566544 44466767889999999999988 8888764 23367788999999
Q ss_pred HHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 217 KVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 217 ~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
++|+++++++|.|+||+.|....+.....+....++.++.+|.+++..||+++++++
T Consensus 143 ~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~ 199 (384)
T d1b9ha_ 143 KISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG 199 (384)
T ss_dssp HHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT
T ss_pred hhhhhhhhhhhhhhceecccccCCEecCcccccceecccccccccccccchhhhhhH
Confidence 999999999999999999987655443333224455666789998888999999864
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.78 E-value=3.5e-20 Score=165.81 Aligned_cols=208 Identities=14% Similarity=0.120 Sum_probs=144.9
Q ss_pred Cceec-CCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 48 GLELI-PSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 48 ~i~L~-~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
.+-|+ .+..++|..|++++.+++.+.+. +........ ....++.+.+|+.+++++|+++++ |+++++++ ++
T Consensus 28 ~iYLd~as~g~~p~~v~~a~~~~l~~~~~--~~~~~~~~~-~~~~~~~e~~R~~iA~llga~~~e----i~~~~~~T~~~ 100 (404)
T d1qz9a_ 28 VIYLDGNSLGARPVAALARAQAVIAEEWG--NGLIRSWNS-AGWRDLSERLGNRLATLIGARDGE----VVVTDTTSINL 100 (404)
T ss_dssp CEECCTTTSCCCBTTHHHHHHHHHHTCCC--CCGGGHHHH-TSGGGHHHHHHHHHHTTTTCCTTS----EEECSCHHHHH
T ss_pred CEEcCCcccccCCHHHHHHHHHHHHHHhc--ccCcccccc-hhHHHHHHHHHHHHHHHhCCCCCc----EEEecCchHHH
Confidence 34554 44557899999999998866442 111110111 112345567889999999999865 89989888 55
Q ss_pred HHHHHH------hcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEE
Q 023191 126 FQVYTA------LLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI 199 (286)
Q Consensus 126 ~~~l~a------~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v 199 (286)
..++.. ...+|+.|++.+..|.+...+.. +...+.. .++.. ..+..+.+.+++++++ +|++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~-----~~~~~---~~~~~~~~~~~~~i~~-~T~lV 168 (404)
T d1qz9a_ 101 FKVLSAALRVQATRSPERRVIVTETSNFPTDLYIA---EGLADML-----QQGYT---LRLVDSPEELPQAIDQ-DTAVV 168 (404)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHH---HHHHHHH-----CSSCE---EEEESSGGGHHHHCST-TEEEE
T ss_pred HHHhhhhhhhhcccCCCcEEEEeccccchHHHHHH---hhhheee-----eecee---ccccccchhHHHhcCC-CceEE
Confidence 434332 24789999998866655432221 1111111 11111 2245677889999988 99999
Q ss_pred EEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc--eEEEEecchh
Q 023191 200 VAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG--AMIFFRKGVK 275 (286)
Q Consensus 200 ~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g--G~l~~~~~~~ 275 (286)
.++ .+| +|...|+++|+++|+++++++++|++|+.|..+.++.... +|++++++|||+++|.| |+++.+.++.
T Consensus 169 ~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~---~d~~~~s~~K~~~~~~g~~g~~~~~~~~~ 245 (404)
T d1qz9a_ 169 MLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAG---ADYAIGCTYKYLNGGPGSQAFVWVSPQLC 245 (404)
T ss_dssp EEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHT---CSEEEECSSSTTCCCTTCCCEEEECTTTT
T ss_pred EEecccccccceecHHHHhccccccccceeEEeecccccccccccccc---ceEEEEechhhcccCCceEEEEEechhhh
Confidence 997 555 8999999999999999999999999999999887766655 99999999999866544 7777777665
Q ss_pred hh
Q 023191 276 EI 277 (286)
Q Consensus 276 ~~ 277 (286)
+.
T Consensus 246 ~~ 247 (404)
T d1qz9a_ 246 DL 247 (404)
T ss_dssp TT
T ss_pred hh
Confidence 43
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.76 E-value=3.5e-18 Score=153.46 Aligned_cols=235 Identities=8% Similarity=-0.020 Sum_probs=147.6
Q ss_pred ccccCh-HHHHHHHHHHHHH-HcCceecCC---CC----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHH
Q 023191 27 LEVVDP-EIADIIEHEKARQ-WKGLELIPS---EN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLC 97 (286)
Q Consensus 27 ~~~~~~-~~~~~~~~~~~~~-~~~i~L~~~---e~----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (286)
+...++ .++..+.+..+.. .+.|||+.| ++ +..+.|+++......+.. ..+.|++..|..+|++++
T Consensus 9 ~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~-----~~~~Y~p~~G~p~lreai 83 (412)
T d1ajsa_ 9 VPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSS-----LNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp CCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTT-----CCCCCCCTTCCHHHHHHH
T ss_pred CCcCCCChHHHHHHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCC-----cCCCCCCCCCCHHHHHHH
Confidence 344433 5566555532211 356999988 21 345778887655443321 123467788999999999
Q ss_pred HHHHHHHCCC--CCCCcceeEEeCCChH-HHHHHH-------HHhcCCCCeEEeccCCCCcccCccccccccccccceee
Q 023191 98 QKRALEAFRL--DPEKWGVNVQSLSGSP-SNFQVY-------TALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIF 167 (286)
Q Consensus 98 ~~~~~~~~g~--~~~~~~~~v~~~sG~~-a~~~~l-------~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~ 167 (286)
++++.+..+. +.+. ..++.+.|.+ +...+. .++++|||+|++++ |.|+.|...+...|.+
T Consensus 84 a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~--------P~y~~y~~~~~~~G~~ 153 (412)
T d1ajsa_ 84 SRLALGDDSPALQEKR--VGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSS--------PTWENHNGVFTTAGFK 153 (412)
T ss_dssp HHHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEE--------SCCTHHHHHHHHTTCS
T ss_pred HHHHhccCCccccccc--ceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeC--------CcchhhHHHHHHcCCe
Confidence 9999887765 3333 2344555544 332222 23379999999999 6666666566778876
Q ss_pred eEEEecccCCCCCCCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccC
Q 023191 168 FETMPYRLNESTGYIDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAG 240 (286)
Q Consensus 168 ~~~v~~~~~~~~~~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~ 240 (286)
...++...+.+.+..|++.+++.+.. .++++++++ |+| +|... .+++|+++|++||++||+|++|.. ....+
T Consensus 154 ~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~-l~~~~ 232 (412)
T d1ajsa_ 154 DIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQG-FASGN 232 (412)
T ss_dssp CEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT-TTTSC
T ss_pred EEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhh-hhcCC
Confidence 54443223435567899888776542 267788887 777 77555 488999999999999999999643 22211
Q ss_pred CCCCC--------CCcceEEEeCCCCCCC--CCCceEEEEecchhhh
Q 023191 241 VIPSP--------FEYADVVTTTTHKSLR--GPRGAMIFFRKGVKEI 277 (286)
Q Consensus 241 ~~~~~--------~~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~ 277 (286)
..... .....+++.+++|.++ |++-|++.+..+..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~ 279 (412)
T d1ajsa_ 233 LEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDS 279 (412)
T ss_dssp HHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHH
T ss_pred cccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHHHH
Confidence 11000 0013467778888764 4556999998765543
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.76 E-value=1.7e-18 Score=156.43 Aligned_cols=217 Identities=11% Similarity=0.018 Sum_probs=142.4
Q ss_pred CceecCCCCCCC-HHHHHHhcccccc--CCCCC---CCCCcccCCcchHHHHHHHHHHHHHHHCCC--CCCCcceeEEeC
Q 023191 48 GLELIPSENFTS-VSVMQAVGSVMTN--KYSEG---YPGARYYGGNEYIDMAESLCQKRALEAFRL--DPEKWGVNVQSL 119 (286)
Q Consensus 48 ~i~L~~~e~~~~-~~v~~a~~~~l~~--~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~--~~~~~~~~v~~~ 119 (286)
.|+|..+||.+. +.+.+.+.+.... ....+ ..+...|+...+..+|++++.+++.+++|. +.+. .+|++|
T Consensus 38 ~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~p--e~I~it 115 (431)
T d1m7ya_ 38 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP--NHLVLT 115 (431)
T ss_dssp BEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG--GGEEEE
T ss_pred EEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCc--ceEEEC
Confidence 699999999754 4444444321100 00000 001123666778899999999999999873 2222 369999
Q ss_pred CChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccc-cceeeeEEEecccCCCCCCCCHHHHHHHhhh----
Q 023191 120 SGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS-AVSIFFETMPYRLNESTGYIDYDQLEKSATL---- 193 (286)
Q Consensus 120 sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---- 193 (286)
+|++ ++.+++.++++|||.|++++|.|+.+.. .+. ..|...+.++++.+ +++.+|++.+++.+.+
T Consensus 116 ~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~--------~~~~~~g~~~v~v~~~~~-~~~~l~~~~~~~~~~~~~~~ 186 (431)
T d1m7ya_ 116 AGATSANETFIFCLADPGEAVLIPTPYYPGFDR--------DLKWRTGVEIVPIHCTSS-NGFQITETALEEAYQEAEKR 186 (431)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH--------HTTTTTCCEEEEEECCGG-GTSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHH--------HHHHhcCceeccccccch-hcccccHHHhhhhhhhhhhc
Confidence 9999 8888999999999999999955544432 222 23544444443322 4578999999887753
Q ss_pred -cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCC-----------CCC-C--cceEEE
Q 023191 194 -FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIP-----------SPF-E--YADVVT 253 (286)
Q Consensus 194 -~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-----------~~~-~--~~D~v~ 253 (286)
.++++++++ |+| +|... .+++|+++|++|+++||+|+++..-......+. ... . ..-+++
T Consensus 187 ~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~ 266 (431)
T d1m7ya_ 187 NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVV 266 (431)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEE
T ss_pred cCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEE
Confidence 246778887 767 66544 478889999999999999999754322211000 000 0 123779
Q ss_pred eCCCCCCC--CCCceEEEEecchh
Q 023191 254 TTTHKSLR--GPRGAMIFFRKGVK 275 (286)
Q Consensus 254 ~s~~K~l~--gp~gG~l~~~~~~~ 275 (286)
.|++|.|+ |.+.|+++.++++.
T Consensus 267 ~s~SK~~~~~G~RiG~~~~~~~~i 290 (431)
T d1m7ya_ 267 YSLSKDLGLPGFRVGAIYSNDDMV 290 (431)
T ss_dssp EESSSSSCCGGGCEEEEEESCHHH
T ss_pred ecCcccccCCCCccceeccchhhh
Confidence 99999875 55679999988754
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=6.3e-19 Score=159.75 Aligned_cols=173 Identities=9% Similarity=-0.009 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH--HHHHHHHHh---cCCCCeEEeccCCCCcccCccccccccccccc
Q 023191 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP--SNFQVYTAL---LKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 164 (286)
Q Consensus 90 ~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~--a~~~~l~a~---~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
..+++..+.+++++++|.+... ...+++|++ ++++++.+. ..+++.|+++...|.++.. .+.+.
T Consensus 92 ~~~le~~~~~~~~~l~g~~~~~---~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~--------a~~~~ 160 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVHSVA---SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFK--------SMVTA 160 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCC---EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHH--------HHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCccc---CccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHH--------HHHHc
Confidence 5678888999999999997643 344445444 444444444 5678999999988877754 34466
Q ss_pred eeeeEEEecccCCCCCCCCHHHHHHHhhhc---CCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEecccccccccc
Q 023191 165 SIFFETMPYRLNESTGYIDYDQLEKSATLF---RPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 239 (286)
Q Consensus 165 g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~---~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~ 239 (286)
|.+.+.+....+.+++.+|+++|++++++. ++.+|+++ +++ +|...|+++|+++|++||+++|+|+||+.+....
T Consensus 161 g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~ 240 (445)
T d3bc8a1 161 GFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKC 240 (445)
T ss_dssp TCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred CCeeEEEEeeccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhc
Confidence 766666643233366899999999999652 46677776 454 6799999999999999999999999988665432
Q ss_pred CCC---CCCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 240 GVI---PSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 240 ~~~---~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
... ...+.++|++++|+||+|++|.| |++++++.
T Consensus 241 ~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~ 278 (445)
T d3bc8a1 241 MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE 278 (445)
T ss_dssp HHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH
T ss_pred cccchhccCcCCcceEEecCccccccCCCCceeeeCCh
Confidence 110 11122489999999999999998 77777764
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=1e-17 Score=147.15 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=142.5
Q ss_pred eecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHH
Q 023191 50 ELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQV 128 (286)
Q Consensus 50 ~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~ 128 (286)
-|++|..+.+++|++||.+...+.. .....++.+.+++.++++++.+++ .+++++|++ ++.++
T Consensus 3 L~~PGP~~v~~~V~~am~~~~~~hr------------~~~f~~i~~~~~~~l~~ll~~~~~----~i~~~gsgT~a~e~~ 66 (348)
T d1iuga_ 3 LLTPGPVRLHPKALEALARPQLHHR------------TEAAREVFLKARGLLREAFRTEGE----VLILTGSGTLAMEAL 66 (348)
T ss_dssp ECSSSSCCCCHHHHHHHHSCCCCTT------------SHHHHHHHHHHHHHHHHHHTCSSE----EEEEESCHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCCC------------CHHHHHHHHHHHHHHHHHhCCCCC----EEEEeCchHHHHHHH
Confidence 3788888889999999976443211 134567777889999999998763 477777777 88879
Q ss_pred HHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc--CCCC
Q 023191 129 YTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG--ASAY 206 (286)
Q Consensus 129 l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~--~~n~ 206 (286)
+..++++||+|++....+ ++..+ ...++..+..+.....+ .+..++++++ . ..+++.++++ .+.+
T Consensus 67 ~~nl~~~g~~vlv~~~G~---f~~~~---~~~a~~~~~~~~~~~~~---~g~~~~~~~~---~-~~~~~~v~~~h~eTst 133 (348)
T d1iuga_ 67 VKNLFAPGERVLVPVYGK---FSERF---YEIALEAGLVVERLDYP---YGDTPRPEDV---A-KEGYAGLLLVHSETST 133 (348)
T ss_dssp HHHHCCTTCEEEEEECSH---HHHHH---HHHHHHTTCEEEEEECC---TTCCCCTTTS---C-CSSCSEEEEESEETTT
T ss_pred HHhcccccccceeecchH---HHHHH---HHHHHhcCccccccccc---CCCccccccc---c-ccCCCeeEEEecchhh
Confidence 999999999999987321 11111 11233344444444432 2223444332 2 3378888875 4447
Q ss_pred CCccCHHHHHHHHHhcC--CEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecchhhhh
Q 023191 207 ARLYDYERIRKVCNKQK--AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKGVKEIN 278 (286)
Q Consensus 207 g~~~~l~~I~~ia~~~~--~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~ 278 (286)
|...|+++|.++|++|+ .++++|++++.|..+.++..+. +|++++++||+|+||+| |++++++++.+..
T Consensus 134 G~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~---iD~~~~~sqK~l~gppG~~~v~~s~~~le~~ 205 (348)
T d1iuga_ 134 GALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMG---VDAAASGSQKGLMCPPGLGFVALSPRALERL 205 (348)
T ss_dssp TEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGT---CSEEEEESSSTTCCCSCEEEEEECHHHHHTC
T ss_pred hhhccHHHHHHHHHhhhccceeechhhhccccccccccccc---CCEEEeccccceecCCceeeeeechHHHhhh
Confidence 89999999999999884 7899999999999888887777 99999999999999999 9999998765443
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.74 E-value=1.5e-17 Score=149.33 Aligned_cols=235 Identities=14% Similarity=0.089 Sum_probs=150.4
Q ss_pred ccccCh-HHHHHHHHHHHHH-HcCceecCC----CC---CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHH
Q 023191 27 LEVVDP-EIADIIEHEKARQ-WKGLELIPS----EN---FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLC 97 (286)
Q Consensus 27 ~~~~~~-~~~~~~~~~~~~~-~~~i~L~~~----e~---~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (286)
+...++ .++...++..+.. .+.|||..| ++ ++.+.|+++......+. ...+.|++..|..+|++++
T Consensus 8 ~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~-----~~~~~Y~p~~G~~~lr~ai 82 (412)
T d1yaaa_ 8 IELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-----SYNHEYLGITGLPSLTSNA 82 (412)
T ss_dssp CCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-----TCCCCCCCTTCCHHHHHHH
T ss_pred CCcCCCChHHHHHHHHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCc-----ccCCCCCCCCCCHHHHHHH
Confidence 444454 3444444332221 246999877 22 34578887755443321 1223467778999999999
Q ss_pred HHHHHHHCCC--CCCCcceeEEeCCChH-HH--HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEe
Q 023191 98 QKRALEAFRL--DPEKWGVNVQSLSGSP-SN--FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMP 172 (286)
Q Consensus 98 ~~~~~~~~g~--~~~~~~~~v~~~sG~~-a~--~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 172 (286)
.+++.+..+. ..+. ..+..+.|+. +. .+.+..+++|||+|++++ |+|+.|...+...|.+++.+|
T Consensus 83 a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~--------P~~~~y~~~~~~~g~~~~~~~ 152 (412)
T d1yaaa_ 83 AKIIFGTQSDALQEDR--VISVQSLSGTGALHISAKFFSKFFPDKLVYLSK--------PTWANHMAIFENQGLKTATYP 152 (412)
T ss_dssp HHHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEE--------SCCTTHHHHHHTTTCCEEEEE
T ss_pred HHHHhcccCccccccc--eeEEecccchhHHHHHHHHHhccCCCCEEeccc--------ccCchhHHHHHHcCCceeccc
Confidence 9999887765 2222 1122223333 22 223455689999999999 666666656778888888787
Q ss_pred cccCCCCCCCCHHHHHHHhhhc--CCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCC-
Q 023191 173 YRLNESTGYIDYDQLEKSATLF--RPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS- 244 (286)
Q Consensus 173 ~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~- 244 (286)
+..+ +++.+|.+.+++.+... ++++++++ |+| +|... .+++|+++|+++++++|+|+++. +....+....
T Consensus 153 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~-~l~~~~~~~~~ 230 (412)
T d1yaaa_ 153 YWAN-ETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ-GFATGDLDKDA 230 (412)
T ss_dssp CEET-TTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTSSSCHHHHT
T ss_pred cccc-ccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceee-ecccCCcccch
Confidence 6543 56788999998887641 34577777 666 77554 48899999999999999999964 3332221100
Q ss_pred ----------CCCcceEEEeCCCCCC--CCCCceEEEEecchhhhh
Q 023191 245 ----------PFEYADVVTTTTHKSL--RGPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 245 ----------~~~~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~~ 278 (286)
.....-+++.|++|.+ .|.|.|++++..+..+..
T Consensus 231 ~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~ 276 (412)
T d1yaaa_ 231 YAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQN 276 (412)
T ss_dssp HHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTH
T ss_pred hhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhH
Confidence 0001337889999976 566779999998765443
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.74 E-value=1.5e-17 Score=146.28 Aligned_cols=198 Identities=15% Similarity=0.106 Sum_probs=128.4
Q ss_pred cCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
+.|+|+.|+|+ +|+.+++++.+.+... ..||. . +..+|+ +.+++++|++++ +|++++|++
T Consensus 23 ~~idls~~~np~~~p~~~~~a~~~~~~~~--~~Yp~------~-~~~~Lr----~aia~~~~v~~~----~I~~~~g~~~ 85 (355)
T d1lc5a_ 23 QLLDFSANINPLGMPVSVKRALIDNLDCI--ERYPD------A-DYFHLH----QALARHHQVPAS----WILAGNGETE 85 (355)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGG--GSCCC------T-TCHHHH----HHHHHHHTSCGG----GEEEESSHHH
T ss_pred heEEccCCCCCCCCCHHHHHHHHHHHHHh--ccCCC------C-ChHHHH----HHHHHHhCCCHH----HEEecccHHH
Confidence 56899988774 6899999998876541 12332 1 223455 667777899874 599999999
Q ss_pred HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-
Q 023191 124 SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG- 202 (286)
Q Consensus 124 a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~- 202 (286)
++..++.++.+ +.+++.. |.|..|.......+..++.++++.+ +++.++ +++.+.+.+ ++|+|+++
T Consensus 86 ~~~~~~~~~~~--~~~~v~~--------p~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-~~~~~~~~~-~~~~v~l~n 152 (355)
T d1lc5a_ 86 SIFTVASGLKP--RRAMIVT--------PGFAEYGRALAQSGCEIRRWSLREA-DGWQLT-DAILEALTP-DLDCLFLCT 152 (355)
T ss_dssp HHHHHHHHHCC--SEEEEEE--------SCCTHHHHHHHHTTCEEEEEECCGG-GTTCCC-TTHHHHCCT-TCCEEEEES
T ss_pred HHHHHHhhhcc--ccccccC--------Cccceeccccccccccceeeeeecc-CCccce-eeeeecccc-ccceeeeec
Confidence 66645444433 3344455 3343333344455666777776544 445655 456666776 89999997
Q ss_pred CCC-CCCccC---HHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC--cceEEEeCCCCCCC--CCCceEEEEecch
Q 023191 203 ASA-YARLYD---YERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--YADVVTTTTHKSLR--GPRGAMIFFRKGV 274 (286)
Q Consensus 203 ~~n-~g~~~~---l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~~D~v~~s~~K~l~--gp~gG~l~~~~~~ 274 (286)
|+| +|...+ +++|+++|++|++++++|++++.............. ...+++.|++|+++ |.+.|+++++++.
T Consensus 153 P~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~ 232 (355)
T d1lc5a_ 153 PNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDA 232 (355)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHH
T ss_pred ccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchh
Confidence 666 675554 778889999999999999997542221111000011 24588999999864 6677999998653
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.74 E-value=1e-17 Score=148.43 Aligned_cols=189 Identities=18% Similarity=0.155 Sum_probs=139.6
Q ss_pred CCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-
Q 023191 54 SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL- 132 (286)
Q Consensus 54 ~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~- 132 (286)
++|...++-++++.+.+.+.+ ++..+...++| +.+++++|.+. .|.+.||++|+.++++++
T Consensus 6 ~~p~~~~~~~~~v~~~l~~~~---------~~~G~~v~~fE----~~~~~~~g~k~-----ai~~~Sgt~Al~~al~al~ 67 (371)
T d2fnua1 6 SEPCLDKEDKKAVLEVLNSKQ---------LTQGKRSLLFE----EALCEFLGVKH-----ALVFNSATSALLTLYRNFS 67 (371)
T ss_dssp CCCCCCHHHHHHHHHHHTSSC---------CSSSHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHcCCC---------ccCCHHHHHHH----HHHHHHHCcCe-----EEEEecHHHHHHHHHHHhc
Confidence 456677888889999887643 22235677777 77888889886 478888888888788888
Q ss_pred cCCCC--eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCCCCCcc
Q 023191 133 LKPHD--RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY 210 (286)
Q Consensus 133 ~~~Gd--~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n~g~~~ 210 (286)
+.+|| +|+++...+.+...+ +...|.++ +.+++++++ .++.+++++.+++ +|++|++. +..|...
T Consensus 68 ~~~~~~~eVi~p~~t~~a~~~a--------i~~~G~~p--v~vDi~~~~-~~~~~~~~~~~~~-~t~avi~v-h~~G~~~ 134 (371)
T d2fnua1 68 EFSADRNEIITTPISFVATANM--------LLESGYTP--VFAGIKNDG-NIDELALEKLINE-RTKAIVSV-DYAGKSV 134 (371)
T ss_dssp CCCTTSCEEEECSSSCTHHHHH--------HHHTTCEE--EECCBCTTS-SBCGGGSGGGCCT-TEEEEEEE-CGGGCCC
T ss_pred ccCCCCCeeeccccccccccee--------eeccCccc--ccccccccc-cccchhhhhhccc-hhhccccc-ccccccc
Confidence 55554 899999877776553 33566544 555677444 5566788888877 89888763 4578888
Q ss_pred CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 211 ~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
++++|.++|+++++++|.|+||+.|....+.....+..+.++.+...|.+.+..||+++++++
T Consensus 135 ~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~ 197 (371)
T d2fnua1 135 EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDS 197 (371)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCH
T ss_pred ccccccccccccchhhccchhhccCceeccccCCccccccccccccccccccccceEEEeech
Confidence 999999999999999999999999987655544333234455555579998888899999873
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.73 E-value=1.5e-17 Score=147.25 Aligned_cols=180 Identities=12% Similarity=0.144 Sum_probs=129.1
Q ss_pred HHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh-cCCCCeEEe
Q 023191 63 MQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL-LKPHDRIMA 141 (286)
Q Consensus 63 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~-~~~Gd~Vl~ 141 (286)
++++.+.+.++|..+ ..+...++| +.+++++|.+. .+.+.||++|+.++++++ +++||+|++
T Consensus 4 ~~~~~~~l~~~~~~~--------~G~~~~~fE----~~~~~~~~~~~-----~~~~~SgT~Al~lal~~l~~~~gdeVi~ 66 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAP--------LGEFVNRFE----QSVKDYSKSEN-----ALALNSATAALHLALRVAGVKQDDIVLA 66 (374)
T ss_dssp HHHHHHHHHHTTTSC--------TTHHHHHHH----HHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred HHHHHHHHhcCCcCC--------CCHHHHHHH----HHHHHHHCcCe-----EEEeCCHHHHHHHHHHHcCCCCcCEEEe
Confidence 466777776644110 124566777 77778889876 588888888888899998 999999999
Q ss_pred ccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHH--HHhhhcCCcEEEEcCCCCCCccCHHHHHHHH
Q 023191 142 LDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLE--KSATLFRPKLIVAGASAYARLYDYERIRKVC 219 (286)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~--~~i~~~~tk~v~i~~~n~g~~~~l~~I~~ia 219 (286)
+...+.+...+. ...|..+ +.++++++....+.+..+ ..+.+ +|++|++. +-.|...++++|.++|
T Consensus 67 p~~t~~a~~~~~--------~~~g~~p--v~~Di~~~~~~~~~~~~~~~~~~~~-~~~aii~~-~~~G~~~d~~~i~~~~ 134 (374)
T d1o69a_ 67 SSFTFIASVAPI--------CYLKAKP--VFIDCDETYNIDVDLLKLAIKECEK-KPKALILT-HLYGNAAKMDEIVEIC 134 (374)
T ss_dssp ESSSCGGGTHHH--------HHTTCEE--EEECBCTTSSBCHHHHHHHHHHCSS-CCCEEEEE-CGGGCCCCHHHHHHHH
T ss_pred CCcchHhhHHHH--------hhcccee--Eecccccccccccccccccchhccc-cccccccc-ccccchhhhHHHHHHh
Confidence 998887765533 3556544 555666444444444333 34444 78888763 3367888999999999
Q ss_pred HhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCC--CCCCCCCceEEEEecc
Q 023191 220 NKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH--KSLRGPRGAMIFFRKG 273 (286)
Q Consensus 220 ~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~--K~l~gp~gG~l~~~~~ 273 (286)
++++++||.|+||+.|....+..... ..|+.++|+| |.+....||+++++++
T Consensus 135 ~~~~i~vIED~a~a~g~~~~~~~~G~--~gd~~~fSf~~~K~l~tgeGG~i~tnn~ 188 (374)
T d1o69a_ 135 KENDIVLIEDAAEALGSFYKNKALGT--FGEFGVYSYNGNKIITTSGGGMLIGKNK 188 (374)
T ss_dssp HHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCCSSCEEEEESCH
T ss_pred hccCcchhhhhhhhhcceECCeecCC--CCceEEEeccCccccccccceeehhhhH
Confidence 99999999999999998765543322 3687777776 8898878899999864
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=7.4e-18 Score=150.30 Aligned_cols=228 Identities=11% Similarity=0.098 Sum_probs=149.7
Q ss_pred hHHHHHHHHHHHHH-HcCceecCCC-------CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHH
Q 023191 32 PEIADIIEHEKARQ-WKGLELIPSE-------NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALE 103 (286)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~i~L~~~e-------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (286)
..++..+.+..+.. .+.|||+.|. +++++.|++|+.+.+.+..+ +.|++..+..+|++++.+++.+
T Consensus 11 d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~------~~Y~p~~G~~~lr~aia~~~~~ 84 (394)
T d2ay1a_ 11 DKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT------KTYAGLSGEPEFQKAMGELILG 84 (394)
T ss_dssp CSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC------CCCCCSSCCHHHHHHHHHHHHG
T ss_pred ChHHHHHHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCC------CCCCCCCCCHHHHHHHHHHHhc
Confidence 34566655543221 3579998872 24568999998887765322 2356778999999999999987
Q ss_pred HCCCCCCCcceeEEeCCChH--HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCC
Q 023191 104 AFRLDPEKWGVNVQSLSGSP--SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGY 181 (286)
Q Consensus 104 ~~g~~~~~~~~~v~~~sG~~--a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 181 (286)
..+..... ..+++++|+. ++.+.+..++++||.|++++ |+|+.|...+...|.+++.+++..+ +.+.
T Consensus 85 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~--------p~~~~y~~~~~~~g~~~v~~~~~~~-~~~~ 153 (394)
T d2ay1a_ 85 DGLKSETT--ATLATVGGTGALRQALELARMANPDLRVFVSD--------PTWPNHVSIMNFMGLPVQTYRYFDA-ETRG 153 (394)
T ss_dssp GGCCGGGE--EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEE--------SCCHHHHHHHHHHTCCEEEEECEET-TTTE
T ss_pred cccccccc--cceeccCchHHHHHHHHHhhhcCCceEEEEec--------ccccchHHHHHHcCCEEEEecccch-hccc
Confidence 76653322 2355544544 34445567789999999999 7777666677788877777765433 4566
Q ss_pred CCHHHHHHHhhh--cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCCCCCCC------Cc
Q 023191 182 IDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF------EY 248 (286)
Q Consensus 182 ~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~------~~ 248 (286)
.+.+++++.... .++++++++ ++| +|... .+++|+++|++|+++||+|+++. +....+.....+ ..
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~ 232 (394)
T d2ay1a_ 154 VDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQ-GFGDGLEEDAAGTRLIASRI 232 (394)
T ss_dssp ECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCT-TSSSCHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccch-hhcccccccchhhhhhhhhc
Confidence 777777776543 245666666 777 77544 47899999999999999999954 332211100000 01
Q ss_pred -ceEEEeCCCCCC--CCCCceEEEEecchhhh
Q 023191 249 -ADVVTTTTHKSL--RGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 249 -~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~ 277 (286)
.-+++.++.|.+ .|.+.|++.+.....+.
T Consensus 233 ~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~ 264 (394)
T d2ay1a_ 233 PEVLIAASCSKNFGIYRERTGCLLALCADAAT 264 (394)
T ss_dssp SSEEEEEECTTTTTCGGGCEEEEEEECSSHHH
T ss_pred ccccccccccccccCCcccccchhhchhHHHH
Confidence 235566777766 46677999998775543
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.72 E-value=4e-18 Score=155.25 Aligned_cols=165 Identities=16% Similarity=0.096 Sum_probs=114.2
Q ss_pred HHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 97 CQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 97 ~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
+++.++++||++. .+++++|++ ++++++.++++|||+|+++..+|.++..++..+ .+....+.+...
T Consensus 71 ae~~~A~~~ga~~-----a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l-------~~~~~~~~~~~~ 138 (462)
T d1c4ka2 71 AEKHAARVYNADK-----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAM-------AGGRPVYLQTNR 138 (462)
T ss_dssp HHHHHHHHTTCSE-----EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTT-------TCCEEEEECEEE
T ss_pred HHHHHHHHhCCCe-----EEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHH-------hcCCceeeeccc
Confidence 4488999999875 477888888 888789999999999999999998876544322 222233333333
Q ss_pred CCCC-------CCCCHHHHHHHh---------hhcCCc-EEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEecccccccc
Q 023191 176 NEST-------GYIDYDQLEKSA---------TLFRPK-LIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLV 237 (286)
Q Consensus 176 ~~~~-------~~~d~e~l~~~i---------~~~~tk-~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~ 237 (286)
++.. ..++.+.+++.+ .. +++ ++++..+| +|.+.|+++|+++|+++|++|++|+||+.+..
T Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~ 217 (462)
T d1c4ka2 139 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWK-RPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ 217 (462)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCS-CCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred ccccccCCCChHHhhHHHHHhhhhhhcHHhhhcc-CCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhcccc
Confidence 3211 134444444332 23 454 44445444 88999999999999999999999999998877
Q ss_pred ccCCCCCC----------CCcceEEEeCCCCCCCCCCceEEE-Eecch
Q 023191 238 AAGVIPSP----------FEYADVVTTTTHKSLRGPRGAMIF-FRKGV 274 (286)
Q Consensus 238 ~~~~~~~~----------~~~~D~v~~s~~K~l~gp~gG~l~-~~~~~ 274 (286)
..+..+.. -.++|++++|+||+++++.+|.++ .++..
T Consensus 218 ~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~ 265 (462)
T d1c4ka2 218 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSH 265 (462)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGG
T ss_pred ccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEecccc
Confidence 65432211 114699999999999988885555 45543
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.2e-18 Score=154.05 Aligned_cols=227 Identities=12% Similarity=0.073 Sum_probs=149.1
Q ss_pred HHHHHHHHHHH-HHcCceecCC---CC----CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHC
Q 023191 34 IADIIEHEKAR-QWKGLELIPS---EN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAF 105 (286)
Q Consensus 34 ~~~~~~~~~~~-~~~~i~L~~~---e~----~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (286)
++..+.+..+. ..+.|||+.| ++ +..+.|++|......+. ...+.|++..|..+||+++++++.+..
T Consensus 13 i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~-----~~~~~Y~p~~G~~~lR~aia~~~~~~~ 87 (397)
T d3tata_ 13 ILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP-----HGASLYLPMEGLNCYRHAIAPLLFGAD 87 (397)
T ss_dssp TTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSC-----CSSBCCCCTTCCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCc-----ccCCCCCCcccCHHHHHHHHHHHhhcc
Confidence 44544443222 1355999987 22 34678888865443221 123457888999999999999998877
Q ss_pred CCCCCCcceeEEeCCChH-----HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCC
Q 023191 106 RLDPEKWGVNVQSLSGSP-----SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTG 180 (286)
Q Consensus 106 g~~~~~~~~~v~~~sG~~-----a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 180 (286)
+...+. .+|.++.|++ ++.+++.++++|||+|++++ |+|+.|...+...|.+++.+|+..+ +.+
T Consensus 88 ~~~~~~--~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~--------P~y~~y~~~~~~~G~~~~~v~~~~~-~~~ 156 (397)
T d3tata_ 88 HPVLKQ--QRVATIQTLGGSGALKVGADFLKRYFPESGVWVSD--------PTWENHVAIFAGAGFEVSTYPWYDE-ATN 156 (397)
T ss_dssp CHHHHT--TCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECS--------SCCTTHHHHHHTTTCCCEECCCCCT-TTS
T ss_pred CCcCCc--CcEEEecCchhHHHHHHHHHHhhhcCCCCcceecc--------cCccccHHHHHHcCCEEEEEecchh-hcc
Confidence 762211 2466655444 24445666789999999999 6666666567788887777775433 556
Q ss_pred CCCHHHHHHHhhh--cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccC-CCCC------CC
Q 023191 181 YIDYDQLEKSATL--FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAG-VIPS------PF 246 (286)
Q Consensus 181 ~~d~e~l~~~i~~--~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~-~~~~------~~ 246 (286)
.+|.+++.+.+.. .++++++++ |+| +|... .+++|+++|++|++++|+|+++.. ....+ .... ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~-l~~~~~~~~~~~~~~~~~ 235 (397)
T d3tata_ 157 GVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQG-FGAGMEEDAYAIRAIASA 235 (397)
T ss_dssp SCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTT-SSSCHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhh-hccCCcccchhhhhhhhc
Confidence 8899988887653 256777777 777 77554 477999999999999999999643 22110 0000 00
Q ss_pred CcceEEEeCCCCCC--CCCCceEEEEecchhhh
Q 023191 247 EYADVVTTTTHKSL--RGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 247 ~~~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~ 277 (286)
...-+++.|++|++ .|+|.|++.+.....+.
T Consensus 236 ~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~ 268 (397)
T d3tata_ 236 GLPALVSNSFSKIFSLYGERVGGLSVMCEDAEA 268 (397)
T ss_dssp TCCCEECBCCHHHHTBTTTCCBCCEEECSSTTH
T ss_pred CCceEEEecCcccccccCccccccccchhHHHH
Confidence 01237789999965 57777999988765543
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=6.9e-18 Score=148.49 Aligned_cols=222 Identities=15% Similarity=0.143 Sum_probs=140.2
Q ss_pred CchhhccccccccChHHHHHHHHHHHHHHcCceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHH
Q 023191 18 TWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLC 97 (286)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (286)
+++++.+..+..+.|+...+ + ......+.|+.+|+|.++. ..+.+..-++| |+. .. .+ +
T Consensus 3 ~~~~l~~~~i~~~~~y~~~~---~-~~~~~~i~L~~ne~p~~~~--~~~~~~~l~rY----Pd~------~~-~~----L 61 (354)
T d1fg7a_ 3 TITDLARENVRNLTPYQSAR---R-LGGNGDVWLNANEYPTAVE--FQLTQQTLNRY----PEC------QP-KA----V 61 (354)
T ss_dssp CHHHHSCHHHHHCCCCCCCC---C-CTTTCSEECSSCCCSSCCC--CCCCCCCTTSC----CCS------SC-HH----H
T ss_pred ChHHhhChhhccCCCCCchh---h-cCCCCCEEeeCCCCCCCCC--HHHHHHHHhcC----CCC------cH-HH----H
Confidence 44555555555555543211 0 0113568999999864221 11222222333 322 11 23 4
Q ss_pred HHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHhcCCCC-eEEeccCCCCcccCccccccccccccceeeeEEEeccc
Q 023191 98 QKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTALLKPHD-RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 175 (286)
Q Consensus 98 ~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~~~~Gd-~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 175 (286)
++.+++++|++++ +|++|+|++ ++..+++++++||| .|+++. |+|..|...+...|..++.++ .
T Consensus 62 r~~ia~~~gv~pe----~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~--------P~y~~~~~~~~~~g~~v~~~~--~ 127 (354)
T d1fg7a_ 62 IENYAQYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCP--------PTYGMYSVSAETIGVECRTVP--T 127 (354)
T ss_dssp HHHHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCCTTTCEEEECS--------SSCTHHHHHHHHHTCEEEECC--C
T ss_pred HHHHHHHhCCChH----HeeeccCchHHHHHHHHHhhccccccccccc--------cccccchhhhhccCceeeccc--c
Confidence 5778888899886 599999999 88889999999999 577788 666666656677787665554 4
Q ss_pred CCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHH---HHHHHHHhcCCEEEEeccccccccccCCCCCCCC--c
Q 023191 176 NESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYE---RIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE--Y 248 (286)
Q Consensus 176 ~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~---~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~--~ 248 (286)
+ +++.+|++++++.+. ++++|+++ |+| +|...+-+ .+.+.+ +++.++++|++++. ............ .
T Consensus 128 ~-~~~~~d~~~l~~~~~--~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~-~~~~~~iidd~~~~-f~~~~~~~~~~~~~~ 202 (354)
T d1fg7a_ 128 L-DNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELT-RGKAIVVADEAYIE-FCPQASLAGWLAEYP 202 (354)
T ss_dssp C-TTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHH-TTTCEEEEECTTGG-GSGGGCSGGGTTTCT
T ss_pred c-cccccchhhhhhccc--ccceeeccCCCccceeEeeecccccccccc-cccccccccccchh-hccccccchhhcccc
Confidence 4 678999999988763 68999998 555 55565544 344444 45778888888553 222111111111 2
Q ss_pred ceEEEeCCCCCC--CCCCceEEEEecchhhhhc
Q 023191 249 ADVVTTTTHKSL--RGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 249 ~D~v~~s~~K~l--~gp~gG~l~~~~~~~~~~~ 279 (286)
..+++.|++|+| .|.+.|++++++++.+.+.
T Consensus 203 ~~iv~~S~SK~~~laGlRiGy~i~~~~~i~~l~ 235 (354)
T d1fg7a_ 203 HLAILRTLSKAFALAGLRCGFTLANEEVINLLM 235 (354)
T ss_dssp TEEEEEESSSTTCCGGGCCEEEEECHHHHHHHH
T ss_pred cceEEeCCccccCCCccccccccccchhhhhhh
Confidence 447789999987 4456699999988776554
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=3e-17 Score=146.51 Aligned_cols=215 Identities=12% Similarity=0.065 Sum_probs=143.2
Q ss_pred HcCceecCC---C----CCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCC--CCCcceeE
Q 023191 46 WKGLELIPS---E----NFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLD--PEKWGVNV 116 (286)
Q Consensus 46 ~~~i~L~~~---e----~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~~~~~v 116 (286)
.+.|||..| + +++++.|++|+.+.+.+... +.|+...|..+|++++.+++.+.++.. .+. ..+
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~------~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~--~~~ 97 (396)
T d2q7wa1 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT------KNYLGIDGIPEFGRCTQELLFGKGSALINDKR--ART 97 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC------CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTC--EEE
T ss_pred CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCC------CCCCCCcCCHHHHHHHHHHHHhhcCCcccccc--eee
Confidence 356999987 2 24568999998877665322 235667899999999999998877762 222 233
Q ss_pred EeCCChH-H--HHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh
Q 023191 117 QSLSGSP-S--NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 193 (286)
Q Consensus 117 ~~~sG~~-a--~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~ 193 (286)
..+.|++ + +...+.+.+++||.|++++ |.|+.|...+...|.+++.+++..+ +++..+...+.+....
T Consensus 98 ~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~--------P~y~~y~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 168 (396)
T d2q7wa1 98 AQTPGGTGALRVAADFLAKNTSVKRVWVSN--------PSWPNHKSVFNSAGLEVREYAYYDA-ENHTLDFDALINSLNE 168 (396)
T ss_dssp EEESHHHHHHHHHHHHHHHHSCCCEEEEEE--------SCCTHHHHHHHHTTCEEEEEECEET-TTTEECHHHHHHHHTT
T ss_pred eccchHHHHHHHHHHHHhhcccceEEEEec--------CCCccchHHHHHcCCeeEecccccc-cccccccchHHHHHHH
Confidence 4455554 3 3334455589999999999 6666666567788888877776544 5566788777776543
Q ss_pred --cCCcEEEEc-CCC-CCCcc---CHHHHHHHHHhcCCEEEEeccccccccccCC-CCCCC------CcceEEEeCCCCC
Q 023191 194 --FRPKLIVAG-ASA-YARLY---DYERIRKVCNKQKAIMLADMAHISGLVAAGV-IPSPF------EYADVVTTTTHKS 259 (286)
Q Consensus 194 --~~tk~v~i~-~~n-~g~~~---~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~-~~~~~------~~~D~v~~s~~K~ 259 (286)
.++++++++ |+| +|... .+++|+++|++|++++|+|+++. +....+. ....+ ....+++.|++|.
T Consensus 169 ~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~-~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 247 (396)
T d2q7wa1 169 AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ-GFARGLEEDAEGLRAFAAMHKELIVASSYSKN 247 (396)
T ss_dssp CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TSSSCHHHHTHHHHHHHHHCSCEEEEEECTTT
T ss_pred hccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEecccc-ccccCCccCchHhhhhhhhccccccccccccc
Confidence 256777777 777 77554 47799999999999999999964 3332111 00000 0134677888887
Q ss_pred C--CCCCceEEEEecchhhhh
Q 023191 260 L--RGPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 260 l--~gp~gG~l~~~~~~~~~~ 278 (286)
+ .|.+.|++.+.....+..
T Consensus 248 ~~~~G~R~G~~~~~~~~~~~~ 268 (396)
T d2q7wa1 248 FGLYNERVGACTLVAADSETV 268 (396)
T ss_dssp TTCGGGCCEEEEEECSSHHHH
T ss_pred ccccCCCccccccchhHHHHH
Confidence 6 566679999987755443
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=5e-17 Score=145.32 Aligned_cols=195 Identities=19% Similarity=0.211 Sum_probs=139.8
Q ss_pred CHHHHHHhccccccCCCCCCCCCccc-CCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHD 137 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd 137 (286)
.|.+++++.+++.. |..+..+.+.. +..+...++| +.+++++|.+. .+++.||..++..++.++.+++|
T Consensus 61 hp~v~~a~~~a~~~-~g~~~~~sr~~~g~~~~~~~lE----~~lA~~~g~e~-----al~~~SG~~An~~~i~~l~~~~d 130 (401)
T d1fc4a_ 61 HPDLIAAAKAGMDS-HGFGMASVRFICGTQDSHKELE----QKLAAFLGMED-----AILYSSCFDANGGLFETLLGAED 130 (401)
T ss_dssp CHHHHHHHHHHHHH-HCSCCCSCHHHHCCBHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHTTHHHHCCTTC
T ss_pred CHHHHHHHHHHHHH-hCCCcccceeeccCcHHHHHHH----HHHHHhhcCCc-----eEEecchhhhhHHHHHHhcCCCc
Confidence 79999999998865 43344333322 2334445555 77788888865 47777787799989999999999
Q ss_pred eEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEEc--CCCCCCcc
Q 023191 138 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVAG--ASAYARLY 210 (286)
Q Consensus 138 ~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i~--~~n~g~~~ 210 (286)
.|+.....|.+... ++...+.+...++ ..|+++++++++.. +..+|++. .++.|...
T Consensus 131 ~i~~d~~~h~s~~~--------G~~~~~a~~~~~~--------~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~ 194 (401)
T d1fc4a_ 131 AIISDALNHASIID--------GVRLCKAKRYRYA--------NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIA 194 (401)
T ss_dssp EEEEETTCCHHHHH--------HHHTSCSEEEEEC--------TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEEC
T ss_pred EEEeCCcchHHHHc--------cccccCceEEEEc--------CCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchh
Confidence 99999888777643 3334444443332 23666666655321 23455554 56677889
Q ss_pred CHHHHHHHHHhcCCEEEEeccccccccccCCC-----CCCCCcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 211 DYERIRKVCNKQKAIMLADMAHISGLVAAGVI-----PSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 211 ~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~-----~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
|+++|.++|++||+++|+|++|+.|.+...-. ......+|+++++++|.|+|+.||++.+++++.+.++
T Consensus 195 ~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~l~ 268 (401)
T d1fc4a_ 195 NLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLR 268 (401)
T ss_dssp CHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHH
T ss_pred hhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCHHHHHHHH
Confidence 99999999999999999999999887753211 1112248999999999999999999999999988776
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.70 E-value=1.6e-16 Score=141.16 Aligned_cols=195 Identities=18% Similarity=0.154 Sum_probs=144.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCc-chHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGN-EYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~--~~ 134 (286)
..|.++++..+++.. |..|..+.+...+. +...+|| +.+++++|.+. .+++.+|..++..++.++ ..
T Consensus 60 ~~p~v~~a~~~al~~-yG~gs~~Sr~~~G~~~~h~~LE----~~lA~~~g~e~-----all~~sG~~An~~~i~~l~~~~ 129 (396)
T d2bwna1 60 QHPVVLAAMHEALEA-VGAGSGGTRNISGTTAYHRRLE----AEIAGLHQKEA-----ALVFSSAYNANDATLSTLRVLF 129 (396)
T ss_dssp GCHHHHHHHHHHHHH-HCSCCCSBTTTBCCBHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHH-hCCCccccccccCCchHHHHHH----HHHHHHhCCCc-----eeeeecchHHHHHHHHHHhccc
Confidence 379999999998876 54555555544443 3445666 88889999874 599999999998888887 57
Q ss_pred CCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhh---cCCcEEEEc--CCCCCCc
Q 023191 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL---FRPKLIVAG--ASAYARL 209 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~---~~tk~v~i~--~~n~g~~ 209 (286)
+||.|+.....|.+... ++.+.+.+++.. +.+ |+++++++++. .+.++|++. +++.|..
T Consensus 130 ~~d~i~~D~~~Hasi~~--------g~~ls~a~~~~f--~Hn------d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ 193 (396)
T d2bwna1 130 PGLIIYSDSLNHASMIE--------GIKRNAGPKRIF--RHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDF 193 (396)
T ss_dssp TTCEEEEETTCCHHHHH--------HHHHSCCCEEEE--CTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCB
T ss_pred CCCceeehhhhhhccch--------hhhccccCceEe--ecc------hHHHhhhHHhhhcccCceeEEEEeeccCcccc
Confidence 89988888876666543 445566555433 332 67777776653 234566664 7889999
Q ss_pred cCHHHHHHHHHhcCCEEEEeccccccccccCCC----CCCC-CcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 210 YDYERIRKVCNKQKAIMLADMAHISGLVAAGVI----PSPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 210 ~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~----~~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
.|+++|.++|++|++++++|+||+.|.+...-. ...+ ..+|++++|+.|.|+ ..||++++++++.++++
T Consensus 194 apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g-~~Gg~v~~~~~~i~~l~ 267 (396)
T d2bwna1 194 GPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFGGYIAASARMVDAVR 267 (396)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCCEEEEECHHHHHHHH
T ss_pred cccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccc-ccccccchhHHHHHHHH
Confidence 999999999999999999999999998753210 0011 237999999999884 46899999999888876
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.68 E-value=1.2e-16 Score=141.23 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=124.5
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| +.++++.|.+. .+++.||..|+.+++.+++++||+|++++..|++...-. .......|
T Consensus 57 ~nPT~~~LE----~~la~LEg~~~-----a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~----~~~~~~~G 123 (392)
T d1gc0a_ 57 SNPTLNLLE----ARMASLEGGEA-----GLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFL----HHGIGEFG 123 (392)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHH----HHTGGGGT
T ss_pred CChHHHHHH----HHHHHHhCCcc-----eeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhh----hhhhccCC
Confidence 345566666 77788888654 588889999888899999999999999998777664322 11222345
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~ 243 (286)
..+..+ + .-|++++++++++ +||+|++. |+| +..+.|++.|+++||++|+++++|.+.+.+.. .
T Consensus 124 i~~~~~--d------~~d~~~~~~ai~~-~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~-----~ 189 (392)
T d1gc0a_ 124 VKLRHV--D------MADLQALEAAMTP-ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL-----Q 189 (392)
T ss_dssp CEEEEE--C------TTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH-----C
T ss_pred cccccC--C------ccCHHHHHHhCCC-CCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccc-----c
Confidence 434333 2 2388999999998 99999996 777 66899999999999999999999999665543 2
Q ss_pred CCCC-cceEEEeCCCCCCCCCC---ceEEEEecchhh
Q 023191 244 SPFE-YADVVTTTTHKSLRGPR---GAMIFFRKGVKE 276 (286)
Q Consensus 244 ~~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~ 276 (286)
.|++ |+|+++.|++|+++|.. +|+++++++...
T Consensus 190 ~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~ 226 (392)
T d1gc0a_ 190 RPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVD 226 (392)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHH
T ss_pred ChHHhCCCEEEEecceeecCCcccccccccchhHHHH
Confidence 3444 69999999999998853 388888887553
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.68 E-value=3.2e-17 Score=147.94 Aligned_cols=172 Identities=12% Similarity=0.106 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh--cCCCCeEEeccCCCCcccCcccccccccccccee
Q 023191 90 IDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--LKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSI 166 (286)
Q Consensus 90 ~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~ 166 (286)
...++..+..++.+++|.+.. ...+..|++ ++.+++.+. ..++++|+++...|+++.. .+.+.|.
T Consensus 111 ~~~~~~~~~~~~~~~~g~~~~----~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k--------~~~~~g~ 178 (434)
T d2z67a1 111 MYALTNKILESFFKQLGLNVH----AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK--------AVSFVGM 178 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE----EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH--------HHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCCcc----eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHH--------HHHHhCC
Confidence 456666777888999998762 355555655 555566665 3488999999988877654 3445566
Q ss_pred eeEEEecccCCCCCCCCHHHHHHHhhhc----CCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccC
Q 023191 167 FFETMPYRLNESTGYIDYDQLEKSATLF----RPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAG 240 (286)
Q Consensus 167 ~~~~v~~~~~~~~~~~d~e~l~~~i~~~----~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~ 240 (286)
..+.++...+.+++.+|+++|+++++++ ++.+|+++ +++ .|...|+++|+++|++||+++++|+||+.+.....
T Consensus 179 ~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~ 258 (434)
T d2z67a1 179 NMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYL 258 (434)
T ss_dssp EEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHH
T ss_pred cceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhcc
Confidence 5555553334356789999999999752 56666666 444 46888999999999999999999999875542211
Q ss_pred -CCCCCC-CcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 241 -VIPSPF-EYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 241 -~~~~~~-~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
....+. .++|++++|+||+|++|.| |+++++++
T Consensus 259 ~~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~ 294 (434)
T d2z67a1 259 EKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA 294 (434)
T ss_dssp HHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCH
T ss_pred ccccccccCCcceEEEcCccccccCCCccccccCcH
Confidence 110111 1499999999999999988 77877764
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.67 E-value=1.4e-16 Score=145.18 Aligned_cols=178 Identities=12% Similarity=0.100 Sum_probs=124.8
Q ss_pred CCcchHHHHHHHHHHHHHHHCCCCCCCc-----ceeEEeCCChH-HHHHHHHHhc----------CCC--------C-eE
Q 023191 85 GGNEYIDMAESLCQKRALEAFRLDPEKW-----GVNVQSLSGSP-SNFQVYTALL----------KPH--------D-RI 139 (286)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~g~~~~~~-----~~~v~~~sG~~-a~~~~l~a~~----------~~G--------d-~V 139 (286)
..++...++|..+.+|+++++|.+...+ ...-++++|++ +++.++.+-- .+| . .|
T Consensus 106 ~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv 185 (476)
T d1js3a_ 106 AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVA 185 (476)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEE
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEE
Confidence 3446678999999999999999964210 02356677776 7775553321 111 1 25
Q ss_pred EeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcC-----CcEEEEc--CCCCCCccCH
Q 023191 140 MALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFR-----PKLIVAG--ASAYARLYDY 212 (286)
Q Consensus 140 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~-----tk~v~i~--~~n~g~~~~l 212 (286)
++++..|.+... .+.+.|..++.+| ++ +++.+|+++|++.+++.. |-+|+.+ .+++|.+.|+
T Consensus 186 ~~s~~~H~Si~k--------a~~~lGl~~~~v~--~d-~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl 254 (476)
T d1js3a_ 186 YASDQAHSSVER--------AGLIGGVKLKAIP--SD-GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNL 254 (476)
T ss_dssp EEETTCCHHHHH--------HHHHHTCEEEEEC--CC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred EecccccHHHHH--------HHHhcCceEEEec--cC-CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccH
Confidence 555655544432 4556777666665 45 678999999999997521 3344444 4448899999
Q ss_pred HHHHHHHHhcCCEEEEeccccccccccCCCCCC---CCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 213 ERIRKVCNKQKAIMLADMAHISGLVAAGVIPSP---FEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 213 ~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~---~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
++|+++|++|++|+++|+|++............ ++.+|+++.++|||++.|.+ |++++|+.
T Consensus 255 ~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~ 319 (476)
T d1js3a_ 255 LEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRR 319 (476)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCH
T ss_pred HHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccch
Confidence 999999999999999999976655554433322 33589999999999999999 99999874
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.66 E-value=3.5e-16 Score=138.27 Aligned_cols=164 Identities=17% Similarity=0.204 Sum_probs=123.1
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| +.++.+.|.+. .+++.||+.|+.+++.+++++||+|++++..|++...... ....-.|
T Consensus 61 ~nPT~~~LE----~~la~LEgg~~-----a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~----~~l~~~G 127 (397)
T d1y4ia1 61 GNPTTDALE----KKLAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLS----HSMPKFG 127 (397)
T ss_dssp SCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHH----THHHHTT
T ss_pred CCHHHHHHH----HHHHHHhCCcc-----ceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhh----cccCCCc
Confidence 445666677 77777777754 5888899998887999999999999999977665543221 1122335
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~ 243 (286)
.++..+ +. -|++.+++++++ +||+|++. |+| +..+.|+++|+++|+++|+++++|.+.+.+. ..
T Consensus 128 i~~~~v--d~------~d~~~~~~~i~~-~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~-----~~ 193 (397)
T d1y4ia1 128 INVRFV--DA------GKPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPY-----CQ 193 (397)
T ss_dssp CEEEEE--CT------TSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTT-----TC
T ss_pred eEeecc--CC------CCHHHHHHhcCC-CCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcc-----cC
Confidence 444333 22 378999999988 99999997 777 5588999999999999999999999954332 33
Q ss_pred CCCC-cceEEEeCCCCCCCCCCc---eEEEEecchhh
Q 023191 244 SPFE-YADVVTTTTHKSLRGPRG---AMIFFRKGVKE 276 (286)
Q Consensus 244 ~~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~~~~ 276 (286)
.|++ |+|+++.|+.|+++|... |+++++++...
T Consensus 194 ~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~ 230 (397)
T d1y4ia1 194 QPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFID 230 (397)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred cchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHH
Confidence 4444 699999999999988544 88888876543
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=1.8e-16 Score=138.20 Aligned_cols=200 Identities=15% Similarity=0.038 Sum_probs=131.7
Q ss_pred HcCceecCCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH
Q 023191 46 WKGLELIPSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP 123 (286)
Q Consensus 46 ~~~i~L~~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~ 123 (286)
++.+.|+.|||+ +|+.+.+++.+.+..... ++|+ ..+..+|++++++++.+. +++++ +|++|+|++
T Consensus 19 ~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~------~~yp-~~g~~~Lr~aia~~~~~~-~v~~d----~I~it~G~~ 86 (334)
T d2f8ja1 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDAL------RIYY-DSPDEELIEKILSYLDTD-FLSKN----NVSVGNGAD 86 (334)
T ss_dssp CCSEECSSCCCSSCCCHHHHHHHHHHCCTTGG------GSCC-CSSCHHHHHHHHHHHTCS-SCCGG----GEEEEEHHH
T ss_pred CCceEEECCCCCCCCCHHHHHHHHHHhhcchh------cCCC-CCCcHHHHHHHHHHhccc-CCCcc----eEEecCcch
Confidence 367899999984 688999998887754211 1222 245678887777776543 45554 599999998
Q ss_pred -HHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 -SNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 -a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++.++ +.+||+|++++ |+|..|...+...|.+++.+| ++.+ +..+ +...+ ++++++++
T Consensus 87 ~~l~~l----~~~~d~v~i~~--------P~y~~~~~~~~~~g~~~v~v~--~~~~-~~~~-----~~~~~-~~~~l~l~ 145 (334)
T d2f8ja1 87 EIIYVM----MLMFDRSVFFP--------PTYSCYRIFAKAVGAKFLEVP--LTKD-LRIP-----EVNVG-EGDVVFIP 145 (334)
T ss_dssp HHHHHH----HHHSSEEEECS--------SCCHHHHHHHHHHTCCEEECC--CCTT-SCCC-----CCCCC-TTEEEEEE
T ss_pred hHHHHH----hhhcccccccc--------ccccccccchhccCCcccccc--cccc-cccc-----ccccc-cceEEEec
Confidence 66544 44679999999 555555545667787776665 4422 3222 12234 78999987
Q ss_pred -CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCC--CCCceEEEEecchhhhh
Q 023191 203 -ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLR--GPRGAMIFFRKGVKEIN 278 (286)
Q Consensus 203 -~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~--gp~gG~l~~~~~~~~~~ 278 (286)
|+| +|...+.++|.+++ ++++++|+|++++................-+++.|++|+++ |.+.|++++++++.+..
T Consensus 146 nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l 224 (334)
T d2f8ja1 146 NPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAY 224 (334)
T ss_dssp SSCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHH
T ss_pred ccccccceeecHHHhhccc-cceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHH
Confidence 777 77888888887764 57899999998654322111111111123478999999764 45669999988877655
Q ss_pred c
Q 023191 279 K 279 (286)
Q Consensus 279 ~ 279 (286)
+
T Consensus 225 ~ 225 (334)
T d2f8ja1 225 N 225 (334)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.64 E-value=6.7e-16 Score=140.07 Aligned_cols=173 Identities=15% Similarity=0.102 Sum_probs=117.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccc
Q 023191 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS 162 (286)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (286)
.|++.+...+|| +.+++++|.+. .+.+.||+.|+.++++++++|||+|+.... +.+... .+.
T Consensus 70 ~Y~~dpt~~~lE----~~~a~l~G~e~-----al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~~--------~i~ 131 (456)
T d1c7ga_ 70 AYAGSENFYHLE----KTVKELFGFKH-----IVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTRF--------HQE 131 (456)
T ss_dssp CSSSCHHHHHHH----HHHHHHHCCSE-----EEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHHH--------HHH
T ss_pred hccCCchHHHHH----HHHHHHhCCCe-----EEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHHH--------HHH
Confidence 367778888888 77788899886 377777877999899999999999986542 111100 112
Q ss_pred cceeeeEEEecc-------cCCCCCCCCHHHHHHHhhhcC---CcEEEEc-CCCC--CCc---cCHHHHHHHHHhcCCEE
Q 023191 163 AVSIFFETMPYR-------LNESTGYIDYDQLEKSATLFR---PKLIVAG-ASAY--ARL---YDYERIRKVCNKQKAIM 226 (286)
Q Consensus 163 ~~g~~~~~v~~~-------~~~~~~~~d~e~l~~~i~~~~---tk~v~i~-~~n~--g~~---~~l~~I~~ia~~~~~~v 226 (286)
..|.....+..+ .++..+.+|+++|++.|+++. +.++++. ++|. |.. .++++|.++|++||+++
T Consensus 132 ~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~ 211 (456)
T d1c7ga_ 132 KNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKI 211 (456)
T ss_dssp HTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCE
T ss_pred HcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEE
Confidence 233322222111 122356899999999998632 3466665 6662 233 35778899999999999
Q ss_pred EEecccccccccc------CCCCCC--------CCcceEEEeCCCCCCCCCCceEEEEecc
Q 023191 227 LADMAHISGLVAA------GVIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKG 273 (286)
Q Consensus 227 ivD~a~~~g~~~~------~~~~~~--------~~~~D~v~~s~~K~l~gp~gG~l~~~~~ 273 (286)
+.|+|+..|.... +..... +..+|++++|+||.++++.||+++++++
T Consensus 212 ~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~ 272 (456)
T d1c7ga_ 212 FYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE 272 (456)
T ss_dssp EEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCH
T ss_pred EEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCH
Confidence 9999998764321 111111 1248999999999999999999999875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.9e-15 Score=134.09 Aligned_cols=195 Identities=17% Similarity=0.150 Sum_probs=141.9
Q ss_pred CCHHHHHHhccccccCCCCCCCCCccc-CCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYY-GGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPH 136 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~G 136 (286)
..|.+++++.+++.+ |..+..+.+.. +..+...+|| +.+++++|.+. .+++.||..++..++.++..++
T Consensus 53 ~~p~v~~a~~~a~~~-~G~~~~~sr~~~g~~~~~~~lE----~~LA~~~g~e~-----al~~~SG~~an~~~i~al~~~~ 122 (383)
T d1bs0a_ 53 HHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQALE----EELAEWLGYSR-----ALLFISGFAANQAVIAAMMAKE 122 (383)
T ss_dssp GCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHH-hCCCCCccccccCcchHHHHHH----HHHHHhcCCCc-----eEEecccchhhHHHHHhhcCCC
Confidence 378999999998876 54455555443 3444556677 77888889764 4888888889998999999999
Q ss_pred CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc--CCcEEEEc--CCCCCCccCH
Q 023191 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF--RPKLIVAG--ASAYARLYDY 212 (286)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~--~tk~v~i~--~~n~g~~~~l 212 (286)
|.|+.....|.+... ++...+...+.+ +. .|++++++.+... +.++|+++ .++.|.+.|+
T Consensus 123 d~v~~d~~~h~si~~--------g~~~~~~~~~~~--~h------nd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl 186 (383)
T d1bs0a_ 123 DRIAADRLSHASLLE--------AASLSPSQLRRF--AH------NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPL 186 (383)
T ss_dssp CEEEEETTCCHHHHH--------HHHTSSSEEEEE--CT------TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCH
T ss_pred ceEEeeccccHHHhh--------ccccCCCcceEe--cc------hHHHHHHHHhcccCCCceEEEecCCCCCCCcccch
Confidence 999998876666543 333444444333 32 3889999888653 34566665 5558899999
Q ss_pred HHHHHHHHhcCCEEEEeccccccccccCCCC--CCC-CcceEEEeCCCCCCCCCCceEEEEecchhhhhc
Q 023191 213 ERIRKVCNKQKAIMLADMAHISGLVAAGVIP--SPF-EYADVVTTTTHKSLRGPRGAMIFFRKGVKEINK 279 (286)
Q Consensus 213 ~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~--~~~-~~~D~v~~s~~K~l~gp~gG~l~~~~~~~~~~~ 279 (286)
++|.++|++||+++++|+||+.|.+...-.- ... ...|+++.++.|.+++ .||++.++.++.+.++
T Consensus 187 ~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~-~Gg~v~~~~~~~~~l~ 255 (383)
T d1bs0a_ 187 AEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV-SGAAVLCSSTVADYLL 255 (383)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSS-CCEEEEECHHHHHHHH
T ss_pred hHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccc-cccccccchhHHHHHH
Confidence 9999999999999999999999877543210 000 1267888999998754 6788999888887776
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=4.3e-15 Score=130.81 Aligned_cols=161 Identities=21% Similarity=0.222 Sum_probs=118.9
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| +.++.+-|.+. .+.+.||..|+..++.+++++||.|++.+..|++...... ......|
T Consensus 48 ~nPt~~~le----~~la~LEgg~~-----a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~----~~~~~~g 114 (384)
T d1cs1a_ 48 GNPTRDVVQ----RALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFD----SLAKRGC 114 (384)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH----HHHTTTS
T ss_pred CCHHHHHHH----HHHHHHhCCCc-----eEEecChHHHHHHHHhhcccccceecccccccchhhhhhh----hhhcccc
Confidence 345566666 77777878654 5899999998888999999999999999877665432211 1111223
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~ 243 (286)
... .. .+ ..|.+++++.+.+ +||+|++. |+| +..+.|+++|+++||++|+++++|.+.+.+. ..
T Consensus 115 ~~~--~~--~d----~~d~~~~~~~~~~-~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~-----~~ 180 (384)
T d1cs1a_ 115 YRV--LF--VD----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPA-----LQ 180 (384)
T ss_dssp CEE--EE--EC----TTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTT-----TC
T ss_pred ccc--cc--cc----CCCHHHHHhhccc-cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcc-----cc
Confidence 222 22 12 2478999999988 99999997 777 5588999999999999999999999954432 33
Q ss_pred CCCC-cceEEEeCCCCCCCCCCc---eEEEEecc
Q 023191 244 SPFE-YADVVTTTTHKSLRGPRG---AMIFFRKG 273 (286)
Q Consensus 244 ~~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~ 273 (286)
.|++ |+|+++.|++|+++|... |+++.+++
T Consensus 181 ~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~ 214 (384)
T d1cs1a_ 181 NPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDP 214 (384)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSH
T ss_pred cccccCCCEEEEccccccccCCCcccccccCCch
Confidence 4455 699999999999988643 77777664
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.61 E-value=3.1e-15 Score=131.66 Aligned_cols=160 Identities=20% Similarity=0.236 Sum_probs=117.8
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| ++++.+-|.+. .+++.||+.|+. ++.+++++||+|++.+..|++...-. .....-.|
T Consensus 47 ~nPt~~~le----~~la~LE~~~~-----a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~----~~~~~~~g 112 (380)
T d1ibja_ 47 GNPTRDALE----SLLAKLDKADR-----AFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLL----SQVVPRSG 112 (380)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHH----HHTSGGGT
T ss_pred CChHHHHHH----HHHHHHcCCce-----EEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchh----hhhhcccc
Confidence 345566666 77788878754 588999988776 67789999999999997777654321 11122234
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~ 243 (286)
..+..+ + ..|++++++++++ +||+|++. |+| +..+.|+++|+++||++|+++|+|.+.+.+. ..
T Consensus 113 i~~~~~--d------~~~~~~~~~ai~~-~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~-----~~ 178 (380)
T d1ibja_ 113 VVVKRV--N------TTKLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPV-----LS 178 (380)
T ss_dssp CEEEEE--C------TTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTT-----TC
T ss_pred cccccc--C------cchHHHHHHHhcc-CccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccc-----cc
Confidence 333322 2 2378999999988 99999997 777 5689999999999999999999999954332 22
Q ss_pred CCCC-cceEEEeCCCCCCCCCCc---eEEEEecc
Q 023191 244 SPFE-YADVVTTTTHKSLRGPRG---AMIFFRKG 273 (286)
Q Consensus 244 ~~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~ 273 (286)
.|++ |+|+++.|++|+++|... |++..+++
T Consensus 179 ~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~ 212 (380)
T d1ibja_ 179 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 212 (380)
T ss_dssp CGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSH
T ss_pred cccccCCCEEEecccceeccccCccccccccchh
Confidence 3444 599999999999988543 88777754
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.59 E-value=1.2e-14 Score=128.53 Aligned_cols=167 Identities=16% Similarity=0.112 Sum_probs=117.1
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| ++++.+.|.+. .+++.||..|+..++.+++++||+|++.+..|++...-. .......|
T Consensus 65 ~nPt~~~LE----~~la~LEgg~~-----a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~----~~~~~~~g 131 (398)
T d1qgna_ 65 GNPTTVVLE----EKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFI----ETILPKMG 131 (398)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHH----HHTGGGGT
T ss_pred CChHHHHHH----HHHHHHhCCce-----EEEecCcchHHHHHHhhcccccccccccccccchhhhhh----cccccccc
Confidence 445566677 77777777654 588999999888899999999999999997776553221 11122334
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~ 243 (286)
.....+ + ..|.++.++.+...+|++|++. |+| +..+.|+++|+++||++|+++++|.+.+.+ ...
T Consensus 132 i~~~~~--~------~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP-----~~~ 198 (398)
T d1qgna_ 132 ITATVI--D------PADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATP-----LNQ 198 (398)
T ss_dssp CEEEEE--C------SSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT-----TTC
T ss_pred cccccc--c------ccchhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeecc-----ccC
Confidence 333322 1 1244545544433399999996 777 558899999999999999999999994333 233
Q ss_pred CCCC-cceEEEeCCCCCCCCCCc---eEEEEecchhhhh
Q 023191 244 SPFE-YADVVTTTTHKSLRGPRG---AMIFFRKGVKEIN 278 (286)
Q Consensus 244 ~~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~~~~~~ 278 (286)
.+++ |+|+++.|++|+++|... |++..+.++....
T Consensus 199 ~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~ 237 (398)
T d1qgna_ 199 KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEI 237 (398)
T ss_dssp CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHH
T ss_pred CchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhh
Confidence 4455 699999999999988743 7777666655443
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=5.8e-16 Score=141.00 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=126.7
Q ss_pred cccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCcccccc-ccc
Q 023191 82 RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD-TKK 160 (286)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~-~~~ 160 (286)
..|++++...+|| +.+++++|.+. .+.+.||+.|+..++.+++.+||.++.....+....+..+... ...
T Consensus 68 ~~Y~~~~~~~~le----~~~a~l~G~~~-----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 138 (467)
T d2v1pa1 68 EAFSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CCSSSCHHHHHHH----HHHHHHTCCSE-----EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred hhhcCCchHHHHH----HHHHHHHCCCE-----EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHH
Confidence 3467778888888 77888999876 4777888889888999999999988877655544433222111 112
Q ss_pred cccceeeeEEEecccC-------CCCCCCCHHHHHHHhhhc---CCcEEEEc-CCCC--CCc---cCHHHHHHHHHhcCC
Q 023191 161 ISAVSIFFETMPYRLN-------ESTGYIDYDQLEKSATLF---RPKLIVAG-ASAY--ARL---YDYERIRKVCNKQKA 224 (286)
Q Consensus 161 ~~~~g~~~~~v~~~~~-------~~~~~~d~e~l~~~i~~~---~tk~v~i~-~~n~--g~~---~~l~~I~~ia~~~~~ 224 (286)
+...|..++.++.+.. ...+.+|++++++.+.+. +++++++. ..|. |.. .++++|.++|++||+
T Consensus 139 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~ 218 (467)
T d2v1pa1 139 SQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDI 218 (467)
T ss_dssp HHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCC
Confidence 3455555544432211 124578999999998753 35667765 3332 233 368899999999999
Q ss_pred EEEEeccccccccccC------CCCCC--------CCcceEEEeCCCCCCCCCCceEEEEecchh
Q 023191 225 IMLADMAHISGLVAAG------VIPSP--------FEYADVVTTTTHKSLRGPRGAMIFFRKGVK 275 (286)
Q Consensus 225 ~vivD~a~~~g~~~~~------~~~~~--------~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~ 275 (286)
++|+|+||..|..... ..... +..+|++++|+||.+++|.||+++++++..
T Consensus 219 ~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~ 283 (467)
T d2v1pa1 219 PVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSF 283 (467)
T ss_dssp CEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGG
T ss_pred EEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhh
Confidence 9999999987654221 11111 124899999999999999999999988644
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=2.9e-14 Score=126.73 Aligned_cols=163 Identities=16% Similarity=0.121 Sum_probs=116.5
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| +.++.+-|.+. .+.+.||..|+.+++.+++++||+|++++..|++...-. .....-.|
T Consensus 56 ~nPT~~~LE----~~la~LE~~~~-----a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~----~~~~~~~g 122 (421)
T d2ctza1 56 MNPTVDVLE----KRLAALEGGKA-----ALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQF----KVTLKRLG 122 (421)
T ss_dssp BCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHH----HTHHHHTT
T ss_pred CCHHHHHHH----HHHHHHhCCCe-----EEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHH----HHHHhhcc
Confidence 445566677 77777777654 589999999888799999999999999997776653321 11122334
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~ 243 (286)
... ..++. .-+.+..++.+++ +||+|++. |+| +..+.|++.|+++||++|+++++|.+.+.+. ...
T Consensus 123 i~~--~~~d~-----~~~~~~~~~~~~~-~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP----~~~ 190 (421)
T d2ctza1 123 IEV--RFTSR-----EERPEEFLALTDE-KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGG----YLL 190 (421)
T ss_dssp CEE--EECCT-----TCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGG----TSC
T ss_pred ccc--eeccc-----ccCcchhccccCC-CceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccc----eec
Confidence 323 22221 1234566667776 99999996 777 5588999999999999999999999954221 223
Q ss_pred CCCC-cceEEEeCCCCCCCCCCc---eEEEEecc
Q 023191 244 SPFE-YADVVTTTTHKSLRGPRG---AMIFFRKG 273 (286)
Q Consensus 244 ~~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~ 273 (286)
.|+. |+|+++.|++|+++|... |+++.+++
T Consensus 191 ~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~ 224 (421)
T d2ctza1 191 RPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGN 224 (421)
T ss_dssp CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSC
T ss_pred cccccCCcEEEEechhhccCCCCeEEEEEEcCCc
Confidence 3455 699999999999988644 77777654
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.52 E-value=2.7e-15 Score=131.80 Aligned_cols=204 Identities=10% Similarity=0.064 Sum_probs=134.3
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccC-CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH--H
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYG-GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP--S 124 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~--a 124 (286)
..|+++|....|++|+++|.+.+.+..+.+. +....+ -+....++-+.+++.++++++++.+. .|++++|++ +
T Consensus 4 ~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~-~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~---~i~~~~gs~t~~ 79 (361)
T d2c0ra1 4 AYNFNAGPAALPLEVLERAQAEFVDYQHTGM-SIMEMSHRGAVYEAVHNEAQARLLALLGNPTGY---KVLFIQGGASTQ 79 (361)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSSTTSSS-CGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSE---EEEEESSHHHHH
T ss_pred CcccCCCCcCCCHHHHHHHHHHHhhhcccCc-cccccCcCCHHHHHHHHHHHHHHHHHhCCCCCC---EEEEECCCchHH
Confidence 3578888888999999999988866221111 110011 13456678888999999999996543 688877776 5
Q ss_pred HHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCC
Q 023191 125 NFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS 204 (286)
Q Consensus 125 ~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~ 204 (286)
+.+++..+..+|+.+++.. ++.+...+. ..+...|..++.+..+ ....++++.+++.+.. + +.+.++ .
T Consensus 80 ~ea~~~~l~~~~~~~l~~~--~g~~~~~~~----~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~-~-~~~~v~-~ 147 (361)
T d2c0ra1 80 FAMIPMNFLKEGQTANYVM--TGSWASKAL----KEAKLIGDTHVAASSE---ASNYMTLPKLQEIQLQ-D-NAAYLH-L 147 (361)
T ss_dssp HHHHHHHHCCTTCEEEEEE--CSHHHHHHH----HHHHHHSCEEEEEECG---GGTTCSCCCGGGCCCC-T-TEEEEE-E
T ss_pred HHHHHhccccCCCceEEEe--echhhhhhh----hhhhhcCceeeeeccc---cccccchhhhhhhccc-C-cceEEE-E
Confidence 5556667789999998776 222221221 1233445545555433 3345677777766654 3 344332 1
Q ss_pred CCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEec
Q 023191 205 AYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 272 (286)
Q Consensus 205 n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (286)
.+|...++++|.++|+++|+++++|+++++|..+.+... .|+.+++++|.++.|.++++++..
T Consensus 148 ~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~-----~di~~~s~~k~~~~~~~~~~~~~~ 210 (361)
T d2c0ra1 148 TSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQ-----FGLVYAGAQKNLGPSGVTVVIVRE 210 (361)
T ss_dssp ESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGG-----CSEEEEETTTTTCCSSCEEEEEEG
T ss_pred ecccceecceEEEeeccCCceEEEEeecccccccccccc-----ceeEEEecccccccccCcEEEEEh
Confidence 155666777888999999999999999999988766654 456677789988777674554443
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=3.5e-14 Score=125.44 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=119.1
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| +.++.+-|.+. .+.+.||++|+.+++.+++++||+|++.+..|++...-.. ....-.|
T Consensus 56 ~nPt~~~le----~~la~LEg~~~-----a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~----~~l~~~G 122 (391)
T d1cl1a_ 56 GTLTHFSLQ----QAMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCS----KILSKLG 122 (391)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHH----HTGGGGT
T ss_pred CChhHHHHH----HHHHHHhCCcc-----EEEeccccceeeehhhcccCCCCeEEEecccccchhhhhh----hcccccc
Confidence 345566666 77777778754 5888999998888999999999999999977776543211 1122334
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhc--CCEEEEeccccccccccCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQ--KAIMLADMAHISGLVAAGV 241 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~--~~~vivD~a~~~g~~~~~~ 241 (286)
.++..+ + ..|.+++++++++ +|++|++. ++| +..+.|+++|+++|+++ |+++++|.+.+.+.
T Consensus 123 i~~~~~--d------~~d~~~~~~~i~~-~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~----- 188 (391)
T d1cl1a_ 123 VTTSWF--D------PLIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGV----- 188 (391)
T ss_dssp CEEEEE--C------TTCGGGGGGTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTT-----
T ss_pred cccccc--c------Ccccccccccccc-ccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchh-----
Confidence 333322 2 1367888888887 99999996 777 55888999999999775 99999999954332
Q ss_pred CCCCCC-cceEEEeCCCCCCCCCC---ceEEEEecchhh
Q 023191 242 IPSPFE-YADVVTTTTHKSLRGPR---GAMIFFRKGVKE 276 (286)
Q Consensus 242 ~~~~~~-~~D~v~~s~~K~l~gp~---gG~l~~~~~~~~ 276 (286)
...|++ |+|+++.|++|+++|.. ||.++.++++..
T Consensus 189 ~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~ 227 (391)
T d1cl1a_ 189 LFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWE 227 (391)
T ss_dssp SSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHH
T ss_pred hhcccccccceEEeecchhccccccccccceeccccccc
Confidence 334455 69999999999998864 387877776543
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.9e-15 Score=130.79 Aligned_cols=206 Identities=8% Similarity=-0.071 Sum_probs=130.9
Q ss_pred CceecCCCCCCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH--HH
Q 023191 48 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP--SN 125 (286)
Q Consensus 48 ~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~--a~ 125 (286)
..|+++|....|++|+++|.+.+.+..+.+.+.....--+....++-+.+++.+++++|++.+ ..|++++|++ ++
T Consensus 2 ~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~---~~v~~~~gs~t~~~ 78 (360)
T d1bjna_ 2 IFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSN---YKVLFCHGGGRGQF 78 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT---EEEEEESSHHHHHH
T ss_pred eEEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC---CEEEEECCchHHHH
Confidence 568999988999999999999887632111110000001244567777899999999999654 3688888887 55
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CC
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-AS 204 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~ 204 (286)
.++...+..+++.+++....+.+. .+.. .....+......... .+..++.+.+++.+.. +++++.+. .+
T Consensus 79 ~a~~~~~~~~~~~v~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~v~v~~~~ 148 (360)
T d1bjna_ 79 AAVPLNILGDKTTADYVDAGYWAA--SAIK----EAKKYCTPNVFDAKV---TVDGLRAVKPMREWQL-SDNAAYMHYCP 148 (360)
T ss_dssp HHHHHHHCTTCCEEEEEESSHHHH--HHHH----HHTTTSEEEEEECEE---EETTEEEECCGGGCCC-CSSCSCEEECS
T ss_pred hhhhhcccccccccceecccchhh--hhHH----HHhhcCccceeeccc---cCCCcchhhhhhhhcc-CCceeEEEecc
Confidence 545556688888888876332222 1111 112233222222211 2234455555555655 77777665 55
Q ss_pred C-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 205 A-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 205 n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
| ++...+++.+ .++.+++++++|++++.+.++.+. .. .|+.++++||++++|.| |+++.++.
T Consensus 149 ~~t~~~~~~~~i--~~~~~~~~v~vDa~~~~~~~~vd~--~~---~dv~~~ss~k~~~~~~~~~~~~~~~~ 212 (360)
T d1bjna_ 149 NETIDGIAIDET--PDFGADVVVAADFSSTILSRPIDV--SR---YGVIYAGAQKNIGPAGLTIVIVREDL 212 (360)
T ss_dssp EETTTTEECCCC--CCCCTTCCEEEECTTTTTSSCCCG--GG---CSEEEEETTTTTSSTTCEEEEEEGGG
T ss_pred cccccCccccce--ecccccceeeeeeeccccceeeee--cc---ceeEEEEcccccccCCCceeEeeehh
Confidence 5 6666666554 357789999999998877665443 33 89999999999998888 66665544
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.48 E-value=9.1e-14 Score=122.83 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=119.4
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| +.++.+-|.+. .+.+.||+.|+.+++.+++++||.|++.+.-|++..... .....-.|
T Consensus 57 ~nPT~~~le----~~la~LEg~~~-----a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~----~~~~~~~g 123 (394)
T d1e5ea_ 57 GNPTVSNLE----GKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALF----EHALTKFG 123 (394)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHH----HTHHHHTT
T ss_pred CCHHHHHHH----HHHHHHhCCcc-----eeeeccchHHHHHHHHhhcccccccccccceeehhhHhH----HHHhhccc
Confidence 445566677 77777778764 488889998888789999999999999997666543211 11122334
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHH-hcCCEEEEeccccccccccCCC
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCN-KQKAIMLADMAHISGLVAAGVI 242 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~-~~~~~vivD~a~~~g~~~~~~~ 242 (286)
..+..+ +. -|.+++++.+++ +||+|++. ++| +..+.+++++.++++ ++++++++|.+.+.+ ..
T Consensus 124 i~~~~~--d~------~d~~~~~~~i~~-~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP-----~~ 189 (394)
T d1e5ea_ 124 IQVDFI--NT------AIPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSP-----MI 189 (394)
T ss_dssp CEEEEE--CT------TSTTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCT-----TT
T ss_pred eeeecc--CC------CCHHHHHHhhcc-cccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCc-----cc
Confidence 333333 21 267789999988 99999996 777 457889999988665 568999999985433 23
Q ss_pred CCCCC-cceEEEeCCCCCCCCCCc---eEEEEecchhhhh
Q 023191 243 PSPFE-YADVVTTTTHKSLRGPRG---AMIFFRKGVKEIN 278 (286)
Q Consensus 243 ~~~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~~~~~~ 278 (286)
..|++ |+|+++.|.+|+++|... |+++++++.....
T Consensus 190 ~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~ 229 (394)
T d1e5ea_ 190 TNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQI 229 (394)
T ss_dssp CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHH
T ss_pred CCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHH
Confidence 34555 699999999999988643 8888887755443
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.48 E-value=4.7e-15 Score=129.87 Aligned_cols=205 Identities=8% Similarity=-0.046 Sum_probs=129.4
Q ss_pred cCceecCCCCCCCHHHHHHhccccccCCCCCCCCC--cccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-
Q 023191 47 KGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGA--RYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP- 123 (286)
Q Consensus 47 ~~i~L~~~e~~~~~~v~~a~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~- 123 (286)
++.|+++|....|++|+++|.+.+.+ |.....+. ..+ -+....++-+.+|+.++++++++.+. .|++++|++
T Consensus 3 ~~~nF~pGP~~~p~~V~~a~~~~~~~-~~~~~~~~~~~sH-Rs~~~~~~~~~~r~~l~~l~~~~~~~---~i~~~~gt~~ 77 (360)
T d1w23a_ 3 QVFNFNAGPSALPKPALERAQKELLN-FNDTQMSVMELSH-RSQSYEEVHEQAQNLLRELLQIPNDY---QILFLQGGAS 77 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSS-STTSSSCGGGSCT-TSHHHHHHHHHHHHHHHHHHTCCTTE---EEEEESSHHH
T ss_pred ceeEeCCCCcCCCHHHHHHHHHHHHh-hcccCccccccCc-CCHHHHHHHHHHHHHHHHHhCCCCCC---EEEEeCCcHH
Confidence 46789999889999999999988765 31111110 001 12345667778999999999997653 689999988
Q ss_pred HHH-HHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc
Q 023191 124 SNF-QVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG 202 (286)
Q Consensus 124 a~~-~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~ 202 (286)
++. ++...+.++++.+++....+.+.. +.. .+...+........... ...+++++++... ....+.+
T Consensus 78 ~~~~~~~~~~~~~~~~v~~~~~g~~~~~-~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~- 145 (360)
T d1w23a_ 78 LQFTMLPMNLLTKGTIGNYVLTGSWSEK-ALK-----EAKLLGETHIAASTKAN---SYQSIPDFSEFQL--NENDAYL- 145 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHH-HHH-----HHHTTSEEEEEEECGGG---TSCSCCCGGGCCC--CTTEEEE-
T ss_pred HHHHHHHhhhcccCcccceeeccchhhh-hHH-----HHHHhhhcceeeccccc---cccchhhhhhccc--cccccee-
Confidence 444 344555778888887753222111 111 12233333333332211 2223333333322 2233332
Q ss_pred CCCCCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCCCCCCceEEEEec
Q 023191 203 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 272 (286)
Q Consensus 203 ~~n~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (286)
...+|...|+++|.++|+++|+++++|++|++|..+.++..+. +|+.+++.||+++ |.+|+++.++
T Consensus 146 ~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~---vd~~~~~~~k~~~-~~~~~~~~~~ 211 (360)
T d1w23a_ 146 HITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFG---MIYAGAQKNLGPS-GVTVVIVKKD 211 (360)
T ss_dssp EEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCS---EEEEETTTTTSCT-TCEEEEEEHH
T ss_pred EecCCccccceeeeeccccceeeEEeecccccccccccccccc---ceEEeeccccccC-CcceeeEech
Confidence 2336777889999999999999999999999999998887776 8888888888543 3335555444
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.47 E-value=4.3e-14 Score=122.36 Aligned_cols=155 Identities=13% Similarity=0.184 Sum_probs=113.2
Q ss_pred HHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCC
Q 023191 98 QKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNE 177 (286)
Q Consensus 98 ~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 177 (286)
.++++.+-|.+. .+.+.||.+|+..++.++++|||+|++++.-|++...... ....-.|.++..+ +.
T Consensus 4 E~~la~Leg~~~-----a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~----~~l~~~gi~~~~~--d~-- 70 (331)
T d1pffa_ 4 EGKIAKLEHAEA-----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFE----HQLRKFGVEVDFI--DM-- 70 (331)
T ss_dssp HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH----THHHHTTCEEEEE--CT--
T ss_pred HHHHHHHhCCCe-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH----HHHHhcCeEEEEe--cc--
Confidence 377888888764 4888999998877899999999999999977766543221 1122345444333 22
Q ss_pred CCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHH-HhcCCEEEEeccccccccccCCCCCCCC-cceEEE
Q 023191 178 STGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVC-NKQKAIMLADMAHISGLVAAGVIPSPFE-YADVVT 253 (286)
Q Consensus 178 ~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia-~~~~~~vivD~a~~~g~~~~~~~~~~~~-~~D~v~ 253 (286)
-|.+.+++++++ +|++|++. ++| +..+.+++++.+++ +++++++++|.+.+.+.. ..|++ |+|+++
T Consensus 71 ----~d~~~~~~~i~~-~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~-----~~pl~~GaDiVv 140 (331)
T d1pffa_ 71 ----AVPGNIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL-----TNPLDLGVDIVV 140 (331)
T ss_dssp ----TSTTHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH-----CCGGGGTCSEEE
T ss_pred ----cchhhHhhhccc-ccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccc-----ccccccCCCEEE
Confidence 278889999988 99999996 666 44788999999885 678999999999544332 23444 599999
Q ss_pred eCCCCCCCCCC---ceEEEEecchh
Q 023191 254 TTTHKSLRGPR---GAMIFFRKGVK 275 (286)
Q Consensus 254 ~s~~K~l~gp~---gG~l~~~~~~~ 275 (286)
.|++|+++|.. ||+++.+++..
T Consensus 141 ~S~TKy~~Gh~d~~~G~v~~~~~~~ 165 (331)
T d1pffa_ 141 HSATKYINGHTDVVAGLVCSRADII 165 (331)
T ss_dssp EETTTTTSSSSSCCCEEEEECHHHH
T ss_pred ecchhhcCCCCccccccccccccch
Confidence 99999998853 38888886544
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.44 E-value=2.9e-14 Score=129.48 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=112.6
Q ss_pred ccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccc
Q 023191 83 YYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKIS 162 (286)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~ 162 (286)
.|++++...+|+ +.+++++|.+. .+.+.||+.|+.+++.+++++|++++..+..+-..- ..+......+.
T Consensus 70 ~y~~~~~~~~le----~~~a~l~g~~~-----~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~-~h~~t~~~~~~ 139 (465)
T d1ax4a_ 70 AYAGSRNYYDLK----DKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN-FHFDTTAAHVE 139 (465)
T ss_dssp CSSSCHHHHHHH----HHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEES-SCCHHHHHHHH
T ss_pred hhccChHHHHHH----HHHHHHHCCCE-----EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEecc-chhhhhHHHHH
Confidence 467777888888 66777889875 244455555999899998887776544332221100 00000000112
Q ss_pred cceeeeEEEe-------cccCCCCCCCCHHHHHHHhhhc---CCcEEEEcCCC-CC--Cc---cCHHHHHHHHHhcCCEE
Q 023191 163 AVSIFFETMP-------YRLNESTGYIDYDQLEKSATLF---RPKLIVAGASA-YA--RL---YDYERIRKVCNKQKAIM 226 (286)
Q Consensus 163 ~~g~~~~~v~-------~~~~~~~~~~d~e~l~~~i~~~---~tk~v~i~~~n-~g--~~---~~l~~I~~ia~~~~~~v 226 (286)
..|......+ ...++..+.+|+++++++|++. .+.++++.++| .+ .. .++++|.++|++||+++
T Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l 219 (465)
T d1ax4a_ 140 LNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFV 219 (465)
T ss_dssp HTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCE
T ss_pred HcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEE
Confidence 2232222221 1123345789999999999753 23455555444 33 22 35789999999999999
Q ss_pred EEeccccccccccC------CCCC--------CCCcceEEEeCCCCCCCCCCceEEEEecchh
Q 023191 227 LADMAHISGLVAAG------VIPS--------PFEYADVVTTTTHKSLRGPRGAMIFFRKGVK 275 (286)
Q Consensus 227 ivD~a~~~g~~~~~------~~~~--------~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~ 275 (286)
|+|++|..+..... .... ....+|++++|.+|.+++|.+|+++++++..
T Consensus 220 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~ 282 (465)
T d1ax4a_ 220 VMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEE 282 (465)
T ss_dssp EEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHH
T ss_pred EEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHH
Confidence 99999986644311 1100 0112789999999999999999999987643
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.44 E-value=1.3e-14 Score=130.07 Aligned_cols=153 Identities=9% Similarity=-0.070 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh--------cCCCCeEEeccCCCCcccCcccccccccc
Q 023191 91 DMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL--------LKPHDRIMALDLPHGGHLSHGYQTDTKKI 161 (286)
Q Consensus 91 ~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~--------~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~ 161 (286)
.+|++.+++.....-|...++ -.|++++|++ ++.+++.++ ++|||+|+++. |.|+.|...+
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~--~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~--------P~y~~Y~~~~ 172 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKD--RYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHA--------PFYPVFREQT 172 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTT--CEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECS--------SCCHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCCCCCC--CEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEec--------CccccHHHHH
Confidence 688888888776666654443 3599999999 888888988 57999999999 6666666555
Q ss_pred ccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHHhcCCEEEEecccccccccc
Q 023191 162 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 239 (286)
Q Consensus 162 ~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~ 239 (286)
.+.+... ..+.+|.+.+++.+++ ++++++++ |+| +|.+.. +..+++.+|+|+++......
T Consensus 173 ~~~~~~~---------~~~~~D~~~~~~~~~~-~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~- 234 (425)
T d2hoxa1 173 KYFDKKG---------YVWAGNAANYVNVSNP-EQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYT- 234 (425)
T ss_dssp HHSCBTT---------EEEEEEGGGGTTCSCG-GGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTS-
T ss_pred HHcCCCC---------CccCCCHHHHHhhCCC-CceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCcccc-
Confidence 5555322 1355677778777777 89999998 555 664321 22358999999996432221
Q ss_pred CCCCCCCCcceEEEeCCCCCC--CCCCceEEEEecc
Q 023191 240 GVIPSPFEYADVVTTTTHKSL--RGPRGAMIFFRKG 273 (286)
Q Consensus 240 ~~~~~~~~~~D~v~~s~~K~l--~gp~gG~l~~~~~ 273 (286)
.+ ... ..-++++.|++|+| .|.|-|+++++++
T Consensus 235 ~~-~~~-~~~~Ivl~S~SK~fglaGlRiGw~i~~~~ 268 (425)
T d2hoxa1 235 PI-KYK-ADEDILLFTMSKFTGHSGSRFGWALIKDE 268 (425)
T ss_dssp CC-CSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCH
T ss_pred ch-hhh-cCCeEEEEeCHHhccCcchheeeEEeCCH
Confidence 11 001 12569999999976 4566699888765
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=2.2e-13 Score=116.95 Aligned_cols=193 Identities=20% Similarity=0.179 Sum_probs=123.0
Q ss_pred CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCC
Q 023191 57 FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPH 136 (286)
Q Consensus 57 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~G 136 (286)
.++|++++||.++... ...|+..+...+|| +++++++|.+. .+++++|+.++.+++.++..+|
T Consensus 11 ~p~p~v~~A~~~a~~g--------~~~yg~~p~~~~le----~~lA~~~G~~~-----~~~~~sGt~A~~~al~a~~~~g 73 (343)
T d1m6sa_ 11 KPTEEMRKAMAQAEVG--------DDVYGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGNQVSIMAHTQRG 73 (343)
T ss_dssp CCCHHHHHHHHTCCCC--------CGGGTCCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHHhhhcC--------CcccCCCHHHHHHH----HHHHHHHCCCe-----EEEeCCHHHHHHHHHHHHhccC
Confidence 4688999999775421 22355556677777 77888999764 3666666669888999999999
Q ss_pred CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEEE-cCC-CCC-C
Q 023191 137 DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIVA-GAS-AYA-R 208 (286)
Q Consensus 137 d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~i-~~~-n~g-~ 208 (286)
|.+++..+.|.++..... .....+ ....+++ ...+..|++.+++.+... ++..+++ +.. +.+ .
T Consensus 74 ~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (343)
T d1m6sa_ 74 DEVILEADSHIFWYEVGA-----MAVLSG--VMPHPVP--GKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR 144 (343)
T ss_dssp CEEEEETTCHHHHSSTTH-----HHHHTC--CEEEEEC--EETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred Cceeccccccceeeeccc-----cccccc--ceeeccc--cccCccCHHHHHHhhhhhhcccccccccccccccccCCce
Confidence 999998866654432111 111222 2223222 235677999999988651 2333433 333 333 3
Q ss_pred c---cCHHHHHHHHHhcCCEEEEeccccccccccCCCCC--CCCcceEEEeCCCCCCCCCCceEEEEecchh
Q 023191 209 L---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPS--PFEYADVVTTTTHKSLRGPRGAMIFFRKGVK 275 (286)
Q Consensus 209 ~---~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~--~~~~~D~v~~s~~K~l~gp~gG~l~~~~~~~ 275 (286)
+ .++++|.++|++|++++++|+++..+......... .....+.++++.+|..+|..+|++....+..
T Consensus 145 ~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 216 (343)
T d1m6sa_ 145 VVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFI 216 (343)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHH
T ss_pred ecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHH
Confidence 3 35668888889999999999998765543322110 0012557777788888888887777766544
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=9.1e-13 Score=116.21 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=113.1
Q ss_pred CcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChHHHHHHHHHhcCCCCeEEeccCCCCcccCccccccccccccce
Q 023191 86 GNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS 165 (286)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~a~~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g 165 (286)
+++....|| +.++.+-|.+. .+.+.||+.|+. ++..++.+||+|++.+..|++...-. .......|
T Consensus 53 gnPT~~~lE----~~la~LE~~~~-----a~~~sSGmaAi~-~~l~~l~~gd~iv~~~~~yg~t~~~~----~~~l~~~g 118 (393)
T d1n8pa_ 53 QNPNRENLE----RAVAALENAQY-----GLAFSSGSATTA-TILQSLPQGSHAVSIGDVYGGTHRYF----TKVANAHG 118 (393)
T ss_dssp CCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHH-HHHHTSCSSCEEEEESSCCHHHHHHH----HHTSTTTC
T ss_pred CChHHHHHH----HHHHHHhCCce-----EEEecCchhHHH-hhhhcccCCCeeeeeeeecccchhhh----hhhhhccc
Confidence 445566666 77888887654 588999988776 55677899999999987666543211 11112233
Q ss_pred eeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCC-CCCccCHHHHHHHHH----hcCCEEEEecccccccccc
Q 023191 166 IFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASA-YARLYDYERIRKVCN----KQKAIMLADMAHISGLVAA 239 (286)
Q Consensus 166 ~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n-~g~~~~l~~I~~ia~----~~~~~vivD~a~~~g~~~~ 239 (286)
..+..+ ..+.+++++++++ +||+|++. |+| +..+.|++.|+++|+ ++|+++++|.+.+.+..
T Consensus 119 i~~~~~---------~~~~~~~~~~i~~-~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~-- 186 (393)
T d1n8pa_ 119 VETSFT---------NDLLNDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI-- 186 (393)
T ss_dssp SCCEEE---------SSHHHHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH--
T ss_pred ceeEEe---------ecchHHHHHHhhh-hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCccc--
Confidence 322222 1356789999988 99999997 777 558899999999999 67899999999544332
Q ss_pred CCCCCCCC-cceEEEeCCCCCCCCCCc---eEEEEecc
Q 023191 240 GVIPSPFE-YADVVTTTTHKSLRGPRG---AMIFFRKG 273 (286)
Q Consensus 240 ~~~~~~~~-~~D~v~~s~~K~l~gp~g---G~l~~~~~ 273 (286)
..|++ |+|+++.|+.|+++|... |+++.+++
T Consensus 187 ---~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~ 221 (393)
T d1n8pa_ 187 ---SNPLNFGADIVVHSATKYINGHSDVVLGVLATNNK 221 (393)
T ss_dssp ---CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCH
T ss_pred ---CCchhhCCCEEEEccccccCCCCccccceeeecch
Confidence 23344 599999999999988543 77777653
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.34 E-value=1.1e-11 Score=105.90 Aligned_cols=196 Identities=15% Similarity=0.084 Sum_probs=121.8
Q ss_pred ceecCCCC--CCCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HH
Q 023191 49 LELIPSEN--FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SN 125 (286)
Q Consensus 49 i~L~~~e~--~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~ 125 (286)
++|. ++| .++|+|++||.++... +..+ |+.. ++.+++++++++++|.+. .+++++|++ ++
T Consensus 5 ~~f~-s~n~~g~~P~v~~A~~~a~~~-~~~~------~~~~----~~~~~l~~~la~~~g~~~-----~v~f~~sGt~An 67 (345)
T d1v72a1 5 LGFS-SDNIAGASPEVAQALVKHSSG-QAGP------YGTD----ELTAQVKRKFCEIFERDV-----EVFLVPTGTAAN 67 (345)
T ss_dssp CBCS-CGGGCCCCHHHHHHHHHTTSS-CCCS------TTCS----HHHHHHHHHHHHHHTSCC-----EEEEESCHHHHH
T ss_pred cCcC-CCCCCCCCHHHHHHHHHHhcc-Cccc------cCCC----HHHHHHHHHHHHHHCCCc-----EEEECCchHHHH
Confidence 4443 455 3689999999876543 1112 2333 344556688999999865 487777666 99
Q ss_pred HHHHHHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc-----CCcEEE
Q 023191 126 FQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF-----RPKLIV 200 (286)
Q Consensus 126 ~~~l~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~-----~tk~v~ 200 (286)
..++.+.+.+++.+++....|.++....... ...+..+..++ .+ .++..+++.+++.+.+. .+..++
T Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 139 (345)
T d1v72a1 68 ALCLSAMTPPWGNIYCHPASHINNDECGAPE-----FFSNGAKLMTV--DG-PAAKLDIVRLRERTREKVGDVHTTQPAC 139 (345)
T ss_dssp HHHHHTSCCTTEEEEECTTSHHHHSSTTHHH-----HHTTSCEEEEC--CC-GGGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred HHHHHHHHhcCCccccccccceeeechhhHH-----HhcCccccccc--cc-ccccccHHHhhhhhccccccccccccee
Confidence 9899999999999998887776665433211 12222222222 22 45688999999988651 233333
Q ss_pred E--cCCC-CC---CccCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC----cceEEEeCCCCCCCCCCceEEE
Q 023191 201 A--GASA-YA---RLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE----YADVVTTTTHKSLRGPRGAMIF 269 (286)
Q Consensus 201 i--~~~n-~g---~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~----~~D~v~~s~~K~l~gp~gG~l~ 269 (286)
+ +..+ .+ ...+++++.++|++||+++++|++|..+............ ..+.++.+.+|...+..++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (345)
T d1v72a1 140 VSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVL 218 (345)
T ss_dssp EEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEE
T ss_pred eeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccccccccccc
Confidence 3 2333 22 3456888899999999999999999876554433222211 2456666777755444444333
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.19 E-value=3e-10 Score=95.73 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=118.7
Q ss_pred CCCCC--CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHH
Q 023191 53 PSENF--TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVY 129 (286)
Q Consensus 53 ~~e~~--~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l 129 (286)
.+|++ ++|+|++||.+...... .+ |+.. ++.+.+|+.+++++|++++ +|++|+|++ ++..++
T Consensus 5 ~nd~~~g~~P~v~eAl~~~~~~~~-~~------y~~~----~~~~~lr~~ia~~~g~~~~----~v~~tsggtean~~a~ 69 (340)
T d1svva_ 5 VNDYSVGMHPKILDLMARDNMTQH-AG------YGQD----SHCAKAARLIGELLERPDA----DVHFISGGTQTNLIAC 69 (340)
T ss_dssp SCSCSSCCCHHHHHHHHHHTTCCC-CS------TTCS----HHHHHHHHHHHHHHTCTTS----EEEEESCHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHhhcCC-CC------CCCC----HHHHHHHHHHHHHhCCCcc----eEEEcCCHHHHHHHHH
Confidence 34553 58999999988654421 12 2332 3445566899999999874 599999998 888899
Q ss_pred HHhcCCCCeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhc------CCcEEEEc-
Q 023191 130 TALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF------RPKLIVAG- 202 (286)
Q Consensus 130 ~a~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~------~tk~v~i~- 202 (286)
.++..+++.++.....|.++........ .+...... .. .....+.+...+..... ++.++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (340)
T d1svva_ 70 SLALRPWEAVIATQLGHISTHETGAIEA------TGHKVVTA--PC--PDGKLRVADIESALHENRSEHMVIPKLVYISN 139 (340)
T ss_dssp HHHCCTTEEEEEETTSHHHHSSTTHHHH------TTCCEEEE--CC--TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEES
T ss_pred HHHhhhccccccccccceeeeecccccc------cceeeeec--cc--ccccccchhHHHHhhhhhcccCCcceeeeecc
Confidence 9999999999998866665543332111 11111111 11 22334444444443221 12233334
Q ss_pred CCCCCCc---cCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCC----cceEEEeCCCCCCCCCCceEEEEec
Q 023191 203 ASAYARL---YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFE----YADVVTTTTHKSLRGPRGAMIFFRK 272 (286)
Q Consensus 203 ~~n~g~~---~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~----~~D~v~~s~~K~l~gp~gG~l~~~~ 272 (286)
++|.+.. .++..+.++|++++.++++|+++..+....+....... ..++...++.|..+++.++......
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (340)
T d1svva_ 140 TTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILND 216 (340)
T ss_dssp SCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSG
T ss_pred cccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccch
Confidence 4444543 34667789999999999999998877766554333211 1456777778866665555554443
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.95 E-value=6.4e-10 Score=98.87 Aligned_cols=170 Identities=17% Similarity=0.121 Sum_probs=113.3
Q ss_pred cchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh-cCCCCeEEeccCCCCcccCccccccccccccc
Q 023191 87 NEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL-LKPHDRIMALDLPHGGHLSHGYQTDTKKISAV 164 (286)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
+++.-++--+++.+++++.|.+. ++.....|++ ...+++++. ....+++++....|++...... ..+...
T Consensus 103 sQG~Lq~l~e~q~~l~eltGmd~----~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~----t~a~~~ 174 (437)
T d1wyua1 103 SQGVLQATFEYQTMIAELAGLEI----ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLR----AYLEAV 174 (437)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSE----ECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHH----HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhCCCc----cccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhh----hhcccc
Confidence 46666666678899999999987 5688889999 333233333 4466788988877766533211 123455
Q ss_pred eeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcCCC-CCCccCHHHHHHHHHhcCCEEEEeccccccccccCCCC
Q 023191 165 SIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASA-YARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP 243 (286)
Q Consensus 165 g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~~n-~g~~~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~ 243 (286)
|.+++.++ .+ ++..+.++ +.+ ++.+|+++.+| .|...++++|.+++|+.|.++++|+.-. ......
T Consensus 175 g~~vv~v~--~~--~~~~~~~~----~~~-~~Aavmi~~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad~~----al~~l~ 241 (437)
T d1wyua1 175 GAKLLTLP--LE--GGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPL----SLGVLK 241 (437)
T ss_dssp TCEEEEEC--CB--TTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTT----GGGTBC
T ss_pred eeeEEeee--cc--cccchhhh----hcc-ceeEEEEccccccccccchHHHHHHhhhccceEEeeechh----hhhccc
Confidence 66565554 33 22222222 445 88999998666 7777899999999999999988886532 122223
Q ss_pred CCCC-cceEEEeCCCC-----CCCCCCceEEEEecchhhh
Q 023191 244 SPFE-YADVVTTTTHK-----SLRGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 244 ~~~~-~~D~v~~s~~K-----~l~gp~gG~l~~~~~~~~~ 277 (286)
.|-+ |+|+++++.++ +++||.+|++.+++++...
T Consensus 242 ~Pg~~GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~ 281 (437)
T d1wyua1 242 PPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQ 281 (437)
T ss_dssp CHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGG
T ss_pred cccccccceEeeccceeccccCCCcCccccccccchhhcc
Confidence 3333 69999988332 4577777999999987654
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=98.68 E-value=3.7e-07 Score=80.96 Aligned_cols=204 Identities=15% Similarity=0.113 Sum_probs=110.5
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~a~~~~l~a~--~~ 134 (286)
-.|+|.+++.+.+..... . .... .....+.+.+.+..... + .+.++ +|+.|+..+++.. ..
T Consensus 69 ~hp~i~~ai~~~~~~~~~-~------~~~~----~~~~~la~~~~~~~~~~-~----~v~f~~sGseA~e~Alk~ar~~t 132 (427)
T d2gsaa_ 69 AHPEVIEALKVAMEKGTS-F------GAPC----ALENVLAEMVNDAVPSI-E----MVRFVNSGTEACMAVLRLMRAYT 132 (427)
T ss_dssp TCHHHHHHHHHHHTTCSC-C------SSCC----HHHHHHHHHHHHHSTTC-S----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCc-c------ccch----hHHHHHHHHHHhhCCcc-c----cccccCCcHHHHHHHHHHHHHhc
Confidence 479999999888765211 0 1111 22333456666665432 2 35555 5555887666544 34
Q ss_pred CCCeEEeccCCCCcccCccccccccccccceeeeE-EEecccCCC---CCCCCHHHHHHHhhhc--CCcEEEEcC--CCC
Q 023191 135 PHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFE-TMPYRLNES---TGYIDYDQLEKSATLF--RPKLIVAGA--SAY 206 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~v~~~~~~~---~~~~d~e~l~~~i~~~--~tk~v~i~~--~n~ 206 (286)
..++|+.....|.+...-....-.......+.... -++.....+ ....|++.+++++.++ +..+|++.| .+.
T Consensus 133 ~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~ 212 (427)
T d2gsaa_ 133 GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNS 212 (427)
T ss_dssp CCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSS
T ss_pred CCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCC
Confidence 56788888777765432111000000000000000 000000000 0134899999999752 456788763 334
Q ss_pred CCccC----HHHHHHHHHhcCCEEEEeccccccccccCCCC-CCCC-cceEEEeCCCCCCCCCCc-eEEEEecchhhhhc
Q 023191 207 ARLYD----YERIRKVCNKQKAIMLADMAHISGLVAAGVIP-SPFE-YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINK 279 (286)
Q Consensus 207 g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~-~~~~-~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~ 279 (286)
|...+ ++.|.++|++||+++|.|++|. |........ ..+. ..|+++++ |.++|... |++++++++.+..+
T Consensus 213 G~~~~~~~~l~~l~~lc~~~~~llI~DEv~t-G~r~g~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~~~i~~~~~ 289 (427)
T d2gsaa_ 213 GFIVPDAGFLEGLREITLEHDALLVFDEVMT-GFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREIMQLVA 289 (427)
T ss_dssp SCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BTTTBTTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEECHHHHTTBT
T ss_pred CCccCCHHHHHHHHHHHHHhceeeeeccccc-cceecccchHHhcCCCHHHHhhh--hccCCCcceeeeeehHHHHHHhc
Confidence 54444 9999999999999999999985 332211100 0001 26887765 55655333 77788888877766
Q ss_pred c
Q 023191 280 Q 280 (286)
Q Consensus 280 ~ 280 (286)
+
T Consensus 290 ~ 290 (427)
T d2gsaa_ 290 P 290 (427)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=98.59 E-value=2e-07 Score=81.62 Aligned_cols=198 Identities=13% Similarity=0.115 Sum_probs=106.3
Q ss_pred CHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeC-CChHHHHHHHHHh--cCC
Q 023191 59 SVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSL-SGSPSNFQVYTAL--LKP 135 (286)
Q Consensus 59 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~-sG~~a~~~~l~a~--~~~ 135 (286)
.|++.+++.+.+.+... .+. .+. . +.+..+.+.+........ ..+.++ ||+.|+..+++.. ...
T Consensus 55 hp~v~~a~~~~~~~~~~--~~~--~~~-~----~~~~~la~~l~~~~~~~~----~~v~f~~sGseA~e~Aik~Ar~~t~ 121 (387)
T d1vefa1 55 NPEVVEAVKRQAETLMA--MPQ--TLP-T----PMRGEFYRTLTAILPPEL----NRVFPVNSGTEANEAALKFARAHTG 121 (387)
T ss_dssp CHHHHHHHHHHHHHCCC--CCT--TSC-C----HHHHHHHHHHHHTSCTTE----EEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhhcc--ccc--ccC-C----chHHHHHHHhhhhccccc----eeeccccCchHHHHHHHHHHHhhcc
Confidence 68999999887765321 111 011 1 222233345554443332 236665 5555777665543 344
Q ss_pred CCeEEeccCCCCcccCccc-----cccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEcC--CCCCC
Q 023191 136 HDRIMALDLPHGGHLSHGY-----QTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA--SAYAR 208 (286)
Q Consensus 136 Gd~Vl~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~~--~n~g~ 208 (286)
..+|+.....|.+...-.. +..+....-....+..+| . .|++.|++.+.+ +..+|++.| .+.|.
T Consensus 122 r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p--~------~d~~~l~~~~~~-~iAavi~EPi~g~~G~ 192 (387)
T d1vefa1 122 RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIP--Y------NDVEALKRAVDE-ETAAVILEPVQGEGGV 192 (387)
T ss_dssp CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEEC--T------TCHHHHHHHCCT-TEEEEEECSEETTTTS
T ss_pred cceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeC--C------CCHHHHHHhcCC-CeEEEEEECCCCCCCC
Confidence 5678877766655431111 001100000000122222 1 278999999977 888888863 33454
Q ss_pred ccC----HHHHHHHHHhcCCEEEEecccc-ccccccCCCCCCCC-cceEEEeCCCCCCCCCCc-eEEEEecchhhhhcc
Q 023191 209 LYD----YERIRKVCNKQKAIMLADMAHI-SGLVAAGVIPSPFE-YADVVTTTTHKSLRGPRG-AMIFFRKGVKEINKQ 280 (286)
Q Consensus 209 ~~~----l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp~g-G~l~~~~~~~~~~~~ 280 (286)
..+ +++|.++|++||+++|.|+++. +|-.........+. ..|++++ .|.++|... +.+..+++..+...+
T Consensus 193 ~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~--gK~l~gG~~~~~~~~~~~~~~~~~~ 269 (387)
T d1vefa1 193 RPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTL--AKALGGGVPLGVAVMREEVARSMPK 269 (387)
T ss_dssp EECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCEEEEEEHHHHHTSCT
T ss_pred ccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeee--cccCCCCccccccccceeeeecccc
Confidence 333 9999999999999999999975 22222111000000 2688775 477755433 666676666555443
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=8.3e-07 Score=78.07 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCHHHHHHHhhhcCCcEEEEcC--CCCCCcc----CHHHHHHHHHhcCCEEEEecccc-ccccccCC--CCCCCCcceEE
Q 023191 182 IDYDQLEKSATLFRPKLIVAGA--SAYARLY----DYERIRKVCNKQKAIMLADMAHI-SGLVAAGV--IPSPFEYADVV 252 (286)
Q Consensus 182 ~d~e~l~~~i~~~~tk~v~i~~--~n~g~~~----~l~~I~~ia~~~~~~vivD~a~~-~g~~~~~~--~~~~~~~~D~v 252 (286)
.|++++++.+.+++..+|++.| .+.|... -+++|.++|++||+++|+|+++. +|-..... ....+ ..|++
T Consensus 175 ~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv-~PDi~ 253 (404)
T d2byla1 175 NDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-RPDIV 253 (404)
T ss_dssp TCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE
T ss_pred cCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCC-CCCEE
Confidence 3789999999765777888863 2344333 28999999999999999999975 22221111 11111 26877
Q ss_pred EeCCCCCCCCC--CceEEEEecchhhhhcc
Q 023191 253 TTTTHKSLRGP--RGAMIFFRKGVKEINKQ 280 (286)
Q Consensus 253 ~~s~~K~l~gp--~gG~l~~~~~~~~~~~~ 280 (286)
+..|.++|. ..|.+++++++.+..+.
T Consensus 254 --~~gK~l~gG~~p~~av~~~~~i~~~~~~ 281 (404)
T d2byla1 254 --LLGKALSGGLYPVSAVLCDDDIMLTIKP 281 (404)
T ss_dssp --EECGGGGTTSSCCEEEEECHHHHTTSCT
T ss_pred --EECchhhCCCccceeeeechhhhhccCC
Confidence 567888654 45999999888776553
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.46 E-value=2.8e-06 Score=75.81 Aligned_cols=198 Identities=11% Similarity=0.121 Sum_probs=117.2
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCCChH-HHHHHHHHh---c
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSP-SNFQVYTAL---L 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~sG~~-a~~~~l~a~---~ 133 (286)
.+|.+.+.+.+..+. |+ .|... .-+++.-+.--+.+.++++++|.+. ++.....|++ +..+++++. -
T Consensus 77 y~P~v~~~~~~~~Ta-YT-PYQPa---EiSQG~LQalfEfQtmi~eLTGMdv----aNaS~yDGatA~aeA~~ma~r~~~ 147 (471)
T d1wyub1 77 YNPKLHEEAARLFAD-LH-PYQDP---RTAQGALRLMWELGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHE 147 (471)
T ss_dssp CCCHHHHHHHHTTSS-CC-TTSCG---GGCHHHHHHHHHHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHhc-cC-CCCCH---HHHHHHHHHHHHHHHHHHHHhCCCc----cccccchHHHHHHHHHHHHHHHhh
Confidence 456677776643222 21 22210 1146665555568899999999987 5677778888 333333332 1
Q ss_pred CCC----CeEEeccCCCCcccCccccccccccccceeeeEEEecccCCCCCCCCHHHHHHHhhhcCCcEEEEc-CCCCCC
Q 023191 134 KPH----DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAG-ASAYAR 208 (286)
Q Consensus 134 ~~G----d~Vl~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~e~l~~~i~~~~tk~v~i~-~~n~g~ 208 (286)
+.| ..++...+.+..... . .....+...+.++ .+ ..+..|.+.+.+...+ ++.++++. |+++|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~a~v~v~~p~~~g~ 216 (471)
T d1wyub1 148 DRGEGRTRRVVLVPDSAHGSNP-A------TASMAGYQVREIP--SG-PEGEVDLEALKRELGP-HVAALMLTNPNTLGL 216 (471)
T ss_dssp HTTCTTTCCEEEEETTSCTHHH-H------HHHHTTCEEEEEC--BC-TTSSBCHHHHHHHCST-TEEEEEECSSCTTSC
T ss_pred hcccccccccccCCccccccee-e------eeecccceeeccc--cc-ccccccchhhhhhhhc-cccceeeccCCCccc
Confidence 122 123333322222211 1 1112232233333 33 4578899999988877 77888887 545664
Q ss_pred c-cCHHHHHHHHHhcCCEEEEeccccccccccCCCCCCCCcceEEEeCCCCCC------CCCCceEEEEecchhhh
Q 023191 209 L-YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSL------RGPRGAMIFFRKGVKEI 277 (286)
Q Consensus 209 ~-~~l~~I~~ia~~~~~~vivD~a~~~g~~~~~~~~~~~~~~D~v~~s~~K~l------~gp~gG~l~~~~~~~~~ 277 (286)
. ...+++.+++|+++..+++|.+..... ..+.+.+-.++|+++...|+.| +||..|++.+++++...
T Consensus 217 ~e~~~~~~~~~~h~~g~~~~~~~~~~~~~--~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~ 290 (471)
T d1wyub1 217 FERRILEISRLCKEAGVQLYYDGANLNAI--MGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPY 290 (471)
T ss_dssp CCTTHHHHHHHHHHHTCEEEEEGGGGGGT--TTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGG
T ss_pred ccchhhhhHHHHHhccccccccccchhhh--hhccccCcccccccccccccccccccccccccccceeehhhhhcc
Confidence 4 458899999999999999998743222 1222222225888888888855 55555999999987654
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=1.2e-05 Score=70.93 Aligned_cols=211 Identities=13% Similarity=0.002 Sum_probs=106.6
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEeCC-ChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLS-GSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~~s-G~~a~~~~l~a~--~~ 134 (286)
-+|++.+++.+.+.... +... . ....+.+..+.+++.+++.-+.. ..+++++ |+.|+..+++.. ..
T Consensus 57 ~~p~i~~ai~~q~~~~~---~~~~---~--~~~~~~~~~la~~l~~~~p~~~~---~~v~f~~sGseA~e~Alk~ar~~t 125 (425)
T d1sffa_ 57 LHPKVVAAVEAQLKKLS---HTCF---Q--VLAYEPYLELCEIMNQKVPGDFA---KKTLLVTTGSEAVENAVKIARAAT 125 (425)
T ss_dssp TCHHHHHHHHHHTTTCS---CCCT---T--TEECHHHHHHHHHHHHHSSCSSC---EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhcC---Cccc---c--cccCcHHHHHHHHHHhhhhhccc---ceeeeeccccchhhhHHHHhhhhh
Confidence 37999999988776521 1110 0 01112233356778887754322 2466654 555776655543 33
Q ss_pred CCCeEEeccCCCCcccCccccc-----cc-cccccceeeeEEEecccCCCC-CCCC-HHHHHHHh----hhcCCcEEEEc
Q 023191 135 PHDRIMALDLPHGGHLSHGYQT-----DT-KKISAVSIFFETMPYRLNEST-GYID-YDQLEKSA----TLFRPKLIVAG 202 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~~-----~~-~~~~~~g~~~~~v~~~~~~~~-~~~d-~e~l~~~i----~~~~tk~v~i~ 202 (286)
...+|+.....|.+...-...+ .. .............+++....+ .... .+..++.+ ...++.+|++.
T Consensus 126 ~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~E 205 (425)
T d1sffa_ 126 KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIE 205 (425)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred cccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEec
Confidence 4567888776666543211100 00 000001111111222211011 1111 11111111 12246778886
Q ss_pred CC--CCCCc----cCHHHHHHHHHhcCCEEEEeccccc-cccccCCCCCCCC-cceEEEeCCCCCCCCCCc-eEEEEecc
Q 023191 203 AS--AYARL----YDYERIRKVCNKQKAIMLADMAHIS-GLVAAGVIPSPFE-YADVVTTTTHKSLRGPRG-AMIFFRKG 273 (286)
Q Consensus 203 ~~--n~g~~----~~l~~I~~ia~~~~~~vivD~a~~~-g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp~g-G~l~~~~~ 273 (286)
|- +.|.. .-++.|.++|++||+++|.||++.. |-.........+. ..|+++ ..|.++|... |+++++++
T Consensus 206 Pi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~gG~P~~av~~~~~ 283 (425)
T d1sffa_ 206 PVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAGGFPLAGVTGRAE 283 (425)
T ss_dssp SBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGTSSCCEEEEEEHH
T ss_pred CccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCcccee--cccccCCCcceEEEEEcHH
Confidence 43 34432 2388999999999999999999873 2222111000111 278777 5688866444 88899998
Q ss_pred hhhhhccC
Q 023191 274 VKEINKQG 281 (286)
Q Consensus 274 ~~~~~~~~ 281 (286)
+.+..+.+
T Consensus 284 i~~~~~~~ 291 (425)
T d1sffa_ 284 VMDAVAPG 291 (425)
T ss_dssp HHTTSCTT
T ss_pred HHHhhCCC
Confidence 87766543
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=98.29 E-value=5.5e-06 Score=72.64 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=66.0
Q ss_pred CHHHHHHHhhhcCCcEEEEcCCC--CCCccC----HHHHHHHHHhcCCEEEEecccccccc-ccCC---CCCCCCcceEE
Q 023191 183 DYDQLEKSATLFRPKLIVAGASA--YARLYD----YERIRKVCNKQKAIMLADMAHISGLV-AAGV---IPSPFEYADVV 252 (286)
Q Consensus 183 d~e~l~~~i~~~~tk~v~i~~~n--~g~~~~----l~~I~~ia~~~~~~vivD~a~~~g~~-~~~~---~~~~~~~~D~v 252 (286)
+.+.++..+.+.++.+|++.|-. .|...+ +++|.++|++||+++|+|++|. |.- .... ....+ ..|++
T Consensus 174 ~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~t-GfgRtG~~~~~e~~gv-~PDiv 251 (404)
T d1z7da1 174 DLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNV-KPDVI 251 (404)
T ss_dssp CHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTC-CCSEE
T ss_pred hHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcc-CCCcccccccccccCC-CCCEE
Confidence 67788877766567888886433 444433 8999999999999999999985 321 1111 11111 26887
Q ss_pred EeCCCCCCCC--CCceEEEEecchhhhhccCC
Q 023191 253 TTTTHKSLRG--PRGAMIFFRKGVKEINKQGK 282 (286)
Q Consensus 253 ~~s~~K~l~g--p~gG~l~~~~~~~~~~~~~~ 282 (286)
+..|.++| ...|++++++++.+..+++.
T Consensus 252 --t~gK~l~gG~~p~~~v~~~~~i~~~~~~~~ 281 (404)
T d1z7da1 252 --LLGKALSGGHYPISAVLANDDIMLVIKPGE 281 (404)
T ss_dssp --EECGGGGTTSSCCEEEEECHHHHTTCCTTC
T ss_pred --EEcccccCCCCCcccccchHHHHccCCCCC
Confidence 45688865 45699999999888777553
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=4.1e-05 Score=67.45 Aligned_cols=209 Identities=14% Similarity=0.078 Sum_probs=104.7
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHhc---
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTALL--- 133 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~~--- 133 (286)
-+|++.+++.+.+.... +... ..... +-...+.+++.+....+.+ .+.+ +||+.|+..++....
T Consensus 60 ~~p~i~~Ai~~q~~~~~---~~~~---~~~~~--~~~~~l~~~l~~~~~~~~~----~v~f~~sGseA~e~A~k~ar~~~ 127 (429)
T d1s0aa_ 60 NHPQLNAAMKSQIDAMS---HVMF---GGITH--APAIELCRKLVAMTPQPLE----CVFLADSGSVAVEVAMKMALQYW 127 (429)
T ss_dssp SCHHHHHHHHHHHHHCS---CCCC---SSEEC--HHHHHHHHHHHHHSCTTCC----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcC---Cccc---CCccc--hHHHHHHHHHHhhhccCcc----eeeeccccccchhhhhhhhhhee
Confidence 37999999988775421 1110 11111 1122244666666655432 3555 455556665554331
Q ss_pred ----CCCCeEEeccCCCCcccCccccc-----cccc-cccceeeeEEEecccCCCC---CCCCHHHHHHHhhh--cCCcE
Q 023191 134 ----KPHDRIMALDLPHGGHLSHGYQT-----DTKK-ISAVSIFFETMPYRLNEST---GYIDYDQLEKSATL--FRPKL 198 (286)
Q Consensus 134 ----~~Gd~Vl~~~~~~~~~~~~~~~~-----~~~~-~~~~g~~~~~v~~~~~~~~---~~~d~e~l~~~i~~--~~tk~ 198 (286)
.++.+|+.....|.+...-...+ .... ...........|....... ..-+++++++.+.. .++.+
T Consensus 128 ~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaa 207 (429)
T d1s0aa_ 128 QAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAA 207 (429)
T ss_dssp HHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEE
T ss_pred ecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccce
Confidence 34567888876665542100000 0000 0000000111221111111 12345555555443 25677
Q ss_pred EEEcCC--CCC-C-ccC---HHHHHHHHHhcCCEEEEeccccc-cccccCCCCCCCC-cceEEEeCCCCCCCC--CCceE
Q 023191 199 IVAGAS--AYA-R-LYD---YERIRKVCNKQKAIMLADMAHIS-GLVAAGVIPSPFE-YADVVTTTTHKSLRG--PRGAM 267 (286)
Q Consensus 199 v~i~~~--n~g-~-~~~---l~~I~~ia~~~~~~vivD~a~~~-g~~~~~~~~~~~~-~~D~v~~s~~K~l~g--p~gG~ 267 (286)
|++.|. +.| . ..| +++|.++|++||+++|.|+.+.. |-.........+. ..|++++ .|.++| ...|+
T Consensus 208 vivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~--gK~l~gG~~p~~a 285 (429)
T d1s0aa_ 208 VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCL--GKALTGGTMTLSA 285 (429)
T ss_dssp EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTSSSCCEE
T ss_pred eeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceeccccccc--ccccccccccccc
Confidence 888753 333 2 222 89999999999999999999762 2221111000001 2677775 476633 34499
Q ss_pred EEEecchhhhhcc
Q 023191 268 IFFRKGVKEINKQ 280 (286)
Q Consensus 268 l~~~~~~~~~~~~ 280 (286)
+++++++.+..+.
T Consensus 286 v~~~~~i~~~~~~ 298 (429)
T d1s0aa_ 286 TLTTREVAETISN 298 (429)
T ss_dssp EEECHHHHHHHHT
T ss_pred hhhHHHHHhccCC
Confidence 9999988776654
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=97.90 E-value=5e-05 Score=66.91 Aligned_cols=203 Identities=12% Similarity=0.038 Sum_probs=99.0
Q ss_pred CCHHHHHHhccccccCCCCCCCCCcccCCcchHHHHHHHHHHHHHHHCCCCCCCcceeEEe-CCChHHHHHHHHHh--cC
Q 023191 58 TSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQS-LSGSPSNFQVYTAL--LK 134 (286)
Q Consensus 58 ~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~v~~-~sG~~a~~~~l~a~--~~ 134 (286)
-+|++.+++.+.+.... +.... +. ++.. .++.+++.+...-..+ .|.+ +||+.|+..+++.. ..
T Consensus 58 ~~p~v~~ai~~q~~~~~---~~~~~-~~-~~~~----~~la~~L~~~~~~~~~----~v~f~~sGseA~e~Alk~Ar~~t 124 (431)
T d1zoda1 58 CHPEIVSVIGEYAGKLD---HLFSE-ML-SRPV----VDLATRLANITPPGLD----RALLLSTGAESNEAAIRMAKLVT 124 (431)
T ss_dssp TCHHHHHHHHHHHHHCC---CCCTT-CC-CHHH----HHHHHHHHHHSCTTCC----EEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcc---ccccc-cc-cHHH----HHHHHHHHHhCCcccc----eeeecccccchHHHHHHHHHHhc
Confidence 36999999988776521 11110 11 1111 2355667776643332 3555 55555777666543 34
Q ss_pred CCCeEEeccCCCCcccCcccc----ccc--cccccceeeeEEEeccc--CCC----CCCCCH---HHHHHHhhh---cCC
Q 023191 135 PHDRIMALDLPHGGHLSHGYQ----TDT--KKISAVSIFFETMPYRL--NES----TGYIDY---DQLEKSATL---FRP 196 (286)
Q Consensus 135 ~Gd~Vl~~~~~~~~~~~~~~~----~~~--~~~~~~g~~~~~v~~~~--~~~----~~~~d~---e~l~~~i~~---~~t 196 (286)
..++|+.....|.+...-... ... ......+ ...++.+. .+. ....+. +.+...+.. .+.
T Consensus 125 ~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 202 (431)
T d1zoda1 125 GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNL 202 (431)
T ss_dssp TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCE
T ss_pred CCcceeecccccccccchhhcccccccccccCCcccC--ceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccc
Confidence 557788777666554210000 000 0111111 11122111 101 011123 333333321 246
Q ss_pred cEEEEcCC--CCCCccC----HHHHHHHHHhcCCEEEEeccccc-cccccCCCCCCCC-cceEEEeCCCCCCCCCCc-eE
Q 023191 197 KLIVAGAS--AYARLYD----YERIRKVCNKQKAIMLADMAHIS-GLVAAGVIPSPFE-YADVVTTTTHKSLRGPRG-AM 267 (286)
Q Consensus 197 k~v~i~~~--n~g~~~~----l~~I~~ia~~~~~~vivD~a~~~-g~~~~~~~~~~~~-~~D~v~~s~~K~l~gp~g-G~ 267 (286)
.+|++.|- +.|...+ +++|.++|++||+++|.||++.. |-.........+. ..|+++. .|.++|..- +.
T Consensus 203 Aavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~--gK~l~gG~p~~a 280 (431)
T d1zoda1 203 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTL--SKTLGAGLPLAA 280 (431)
T ss_dssp EEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE--CHHHHTTSSCEE
T ss_pred cceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhcc--ccccccccccce
Confidence 77888633 2333322 89999999999999999999863 3222111000001 2687775 466644333 55
Q ss_pred EEEecchhhh
Q 023191 268 IFFRKGVKEI 277 (286)
Q Consensus 268 l~~~~~~~~~ 277 (286)
++++++..+.
T Consensus 281 v~~~~~~~~~ 290 (431)
T d1zoda1 281 IVTSAAIEER 290 (431)
T ss_dssp EEECHHHHHH
T ss_pred eeeeecchhh
Confidence 6666554443
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.28 E-value=0.00043 Score=61.25 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHHHhh-----hcCCcEEEEcCCC--CCCc-cC---HHHHHHHHHhcCCEEEEecccc
Q 023191 184 YDQLEKSAT-----LFRPKLIVAGASA--YARL-YD---YERIRKVCNKQKAIMLADMAHI 233 (286)
Q Consensus 184 ~e~l~~~i~-----~~~tk~v~i~~~n--~g~~-~~---l~~I~~ia~~~~~~vivD~a~~ 233 (286)
++++++++. ..++.+|++.|-. .|.. .| +++|.++|++||+++|.|+++.
T Consensus 232 ~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~t 292 (461)
T d1ohwa_ 232 LEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT 292 (461)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccc
Confidence 455555543 1246678886433 3322 22 8899999999999999999986
|