Citrus Sinensis ID: 023225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFASGGGKGGGGSWGSGGGGGGGDDDAGFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGWCRHNECFD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccccccccccccEEEEEEEEccccccccEEEEEEcccccccccEEEEEEEcccccccccccEcccccccccccccccccHHHHHHHHHHHcccHHHccHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
matasfsnlptrafspsyhnchqSFVIKNitrqipnphlinfsltctsstpnknktcrptvifasgggkggggswgsgggggggdddagfhNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVwlpaptislrpplamstgpiakfffncpdnafqvAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGWCRHNECFD
Flexible Loop (DISEMBL)
matasfsnlptrafspsyHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFasgggkggggSWGSGGGGGGGDDDAGFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTsaslvgwcrhnecfd
Low Complexity Region (SEG)
MATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFAsgggkggggswgsgggggggdddagFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGWCRHNECFD
Disordered region (IsUnstruct)
***************PSYHNCHQSFVIKNITRQIPNPHLINFSLTCTS********CRPTVIF**************************FHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGWCRHNEC**
Disordered Region (DISOPRED)
*******NLPTRAF********************************************************************************EAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTI**************KFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGWCRHNECFD
Disordered Region (DISEMBL)
MATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFASGGGKGGGGSWGSGGGGGGGDDDAGFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGWCRHNECFD
Disordered Region (DISPRO)
*ATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFASGG*K******************AGFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGWCRHNECFD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCRPTVIFASGGGKGGGGSWGSGGGGGGGDDDAGFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTxxxxxxxxxxxxxxxxxxxxxVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGWCRHNECFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
224059600	382	predicted protein [Populus trichocarpa]	0.957	0.714	0.664	3e-87
255553448	388	conserved hypothetical protein [Ricinus	0.954	0.701	0.641	3e-86
225450009	380	PREDICTED: uncharacterized protein LOC10	0.954	0.715	0.677	2e-85
356542804	372	PREDICTED: uncharacterized protein LOC10	0.652	0.5	0.811	6e-82
356531649	376	PREDICTED: uncharacterized protein LOC10	0.652	0.494	0.811	5e-81
225435391	384	PREDICTED: uncharacterized protein LOC10	0.684	0.507	0.753	6e-81
413945208	387	hypothetical protein ZEAMMB73_229307 [Ze	0.649	0.478	0.767	3e-80
226529786	387	uncharacterized protein LOC100276525 [Ze	0.649	0.478	0.767	3e-80
242087801	413	hypothetical protein SORBIDRAFT_09g01918	0.649	0.447	0.772	5e-80
125552186	297	hypothetical protein OsI_19813 [Oryza sa	0.663	0.636	0.772	6e-80

>gi|224059600|ref|XP_002299927.1| predicted protein [Populus trichocarpa] gi|222847185|gb|EEE84732.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 188/283 (66%), Positives = 213/283 (75%), Gaps = 10/283 (3%)

Query: 1   MATASFSNLPTRAFS---PSYHNCHQSFVIKNITRQIP----NPHLINFSLTCTSSTPNK 53
           MA A+FS   TRAFS   P+YH+ + S     I+  +P     P     S T T+S   +
Sbjct: 1   MAFATFS---TRAFSLQSPNYHHQYHSNNFATISLCVPIPTSKPSATPLSWTTTTSRFKR 57

Query: 54  NKTCRPTVIFASGGGKGGGGSWGSGGGGGGGDDDAGFHNCTEAIFALAKAGRTLGDLPKD 113
            +T          GG GGGG  G GGGG     DAG  N +EAI ALA+ GR+L  LPKD
Sbjct: 58  FRTTIALSSGGGDGGVGGGGISGGGGGGNDDGGDAGSRNKSEAILALAEVGRSLESLPKD 117

Query: 114 LAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFT 173
           LA AIEAGRVP +IV RY ELEKS VFRWLL FGGF+ERLLADDLFL KVA+ECGVG+FT
Sbjct: 118 LAAAIEAGRVPGSIVSRYFELEKSAVFRWLLQFGGFKERLLADDLFLTKVAIECGVGIFT 177

Query: 174 KTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFF 233
           KTAAELERRRENF+KELDFVFADVVMAIIADFMLVWLPAPT+SLRPPLA+S GP++KFF+
Sbjct: 178 KTAAELERRRENFTKELDFVFADVVMAIIADFMLVWLPAPTVSLRPPLALSAGPVSKFFY 237

Query: 234 NCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVG 276
           +CPDNAFQVA  GTSYS +QRIGAI+RNGAKLFAVGT ASLVG
Sbjct: 238 SCPDNAFQVALAGTSYSFLQRIGAILRNGAKLFAVGTGASLVG 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553448|ref|XP_002517765.1| conserved hypothetical protein [Ricinus communis] gi|223543037|gb|EEF44572.1| conserved hypothetical protein [Ricinus communis]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 186/290 (64%), Positives = 217/290 (74%), Gaps = 18/290 (6%)

Query: 1   MATASFSNLPTRAFSPSYHNCHQSFVIKNITRQIPNPHLINFSLTCTSSTPNKNKTCR-- 58
           MA A+FSNLPTRA + S H+ +    +   T  + NP +   +++  S+TP  + +    
Sbjct: 1   MAIANFSNLPTRA-ALSLHSGNH---LHRRTFTVINPRITTTTVSKLSTTPLTHSSSHNR 56

Query: 59  --PTVIFASGGGKGGGGSWGSGGGGGGGDDD----------AGFHNCTEAIFALAKAGRT 106
              T++F+SG G G GG  G  GGGGGG             A   N TEA  ALA+ GR+
Sbjct: 57  FHTTLVFSSGHGGGTGGYGGGSGGGGGGGGGGDGRSDDDSDAESRNRTEAFLALAEVGRS 116

Query: 107 LGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAME 166
           L  LPKDLAGAIEAGR+P +IV RY ELEKSP+FRWLL FGGF+ERLLADDLFL KVA+E
Sbjct: 117 LESLPKDLAGAIEAGRLPGSIVHRYFELEKSPIFRWLLQFGGFKERLLADDLFLTKVAIE 176

Query: 167 CGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTG 226
           CGVG+FTKTAAELE+RRE F+KELDFVFADVVMAIIADFMLVWLPAPT+SLRPPLA+S G
Sbjct: 177 CGVGIFTKTAAELEKRREKFTKELDFVFADVVMAIIADFMLVWLPAPTVSLRPPLAVSAG 236

Query: 227 PIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVG 276
            IAKFF+ CPDNAFQVA  GTSYS +QR+GAIVRNG KLFAVGTSASLVG
Sbjct: 237 GIAKFFYTCPDNAFQVALAGTSYSFLQRVGAIVRNGGKLFAVGTSASLVG 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450009|ref|XP_002274472.1| PREDICTED: uncharacterized protein LOC100255131 [Vitis vinifera]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 191/282 (67%), Positives = 213/282 (75%), Gaps = 10/282 (3%)

Query: 1   MATASFSNLPTRAFSPSYHNCHQSFVIKNIT-RQIPNPHLINFSLTCTSSTPNKNKTCRP 59
           MA A+FSN  +RA S      H S  I ++T R+I    +    LT      +  +   P
Sbjct: 1   MAIATFSNFSSRALSFPTPTPHLSPPILSVTTRRITAASV----LTPPQRIFDSRRYRLP 56

Query: 60  TVIFA-----SGGGKGGGGSWGSGGGGGGGDDDAGFHNCTEAIFALAKAGRTLGDLPKDL 114
           TV+ A     SGG  GGGG  G GGGGGG D DA   N TEAI ALA+ GR+L  LPKDL
Sbjct: 57  TVVLAVGDGGSGGVPGGGGGGGGGGGGGGEDGDAEERNRTEAILALAEMGRSLDSLPKDL 116

Query: 115 AGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTK 174
           A A++AGR+P AIV RY ELEKS VFRWLL FGGF+ERLLADDLFLAKVAMECGVG+FTK
Sbjct: 117 AAAVQAGRIPGAIVSRYFELEKSAVFRWLLQFGGFKERLLADDLFLAKVAMECGVGIFTK 176

Query: 175 TAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFN 234
           TAAELERRRE FSKELDFVFADVVMAIIADFMLVWLPAPT+SL+PPLA+S G +AKFF+ 
Sbjct: 177 TAAELERRREKFSKELDFVFADVVMAIIADFMLVWLPAPTVSLKPPLAVSAGALAKFFYR 236

Query: 235 CPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVG 276
           CPDNAFQVA  GTSYS +QRIGAIVRNGAKLFAVGT ASLVG
Sbjct: 237 CPDNAFQVALAGTSYSFLQRIGAIVRNGAKLFAVGTGASLVG 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542804|ref|XP_003539855.1| PREDICTED: uncharacterized protein LOC100818590 [Glycine max]

 Score =  310 bits (793), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 151/186 (81%), Positives = 165/186 (88%)

Query: 91  HNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFR 150
            N  EA+  LA+AGR L  LP DLA A+EAGRVP +IVKR  ELEKS VFRWLLNFGGFR
Sbjct: 85  RNREEALLVLAEAGRPLEKLPADLAAAVEAGRVPGSIVKRLFELEKSAVFRWLLNFGGFR 144

Query: 151 ERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWL 210
           ERLLADDLFLAKVAMECGVG+FTKTAAELE+R+ENF+KELDFV ADVVMAI+ADFMLVWL
Sbjct: 145 ERLLADDLFLAKVAMECGVGIFTKTAAELEKRKENFTKELDFVCADVVMAIVADFMLVWL 204

Query: 211 PAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGT 270
           PAPT+SLRPPLA+S G IAKFF+ CP+NAFQVA  GTSYSLIQRIGAIVRNGAKLFAVGT
Sbjct: 205 PAPTVSLRPPLAVSAGTIAKFFYGCPENAFQVALAGTSYSLIQRIGAIVRNGAKLFAVGT 264

Query: 271 SASLVG 276
            ASL+G
Sbjct: 265 GASLIG 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531649|ref|XP_003534389.1| PREDICTED: uncharacterized protein LOC100808020 [Glycine max]

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 151/186 (81%), Positives = 164/186 (88%)

Query: 91  HNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFR 150
            N  EA+  LA+AGR L  LP DLA AI AGRVP +IVKR  ELEKS VFRWLLNFGGFR
Sbjct: 89  RNREEALLVLAEAGRPLEKLPADLAAAIGAGRVPGSIVKRLFELEKSAVFRWLLNFGGFR 148

Query: 151 ERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWL 210
           ERLLADDLFLAKVAMECGVG+FTKTAAELE+R+ENF+KELDFV ADVVMAI+ADFMLVWL
Sbjct: 149 ERLLADDLFLAKVAMECGVGIFTKTAAELEKRKENFTKELDFVCADVVMAIVADFMLVWL 208

Query: 211 PAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGT 270
           PAPT+SLRPPLA+S G IAKFF+ CP+NAFQVA  GTSYSLIQRIGAIVRNGAKLFAVGT
Sbjct: 209 PAPTVSLRPPLAVSAGTIAKFFYGCPENAFQVALAGTSYSLIQRIGAIVRNGAKLFAVGT 268

Query: 271 SASLVG 276
            ASL+G
Sbjct: 269 GASLIG 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435391|ref|XP_002285363.1| PREDICTED: uncharacterized protein LOC100265633 [Vitis vinifera]

 Score =  306 bits (785), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 147/195 (75%), Positives = 168/195 (86%)

Query: 91  HNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFR 150
           +N   A+  LA+ GR+L  +PKDLA AIE+G++PAAIV++YLELEKS VFRWLL FGGFR
Sbjct: 94  NNKKAAVLVLAEMGRSLESVPKDLAAAIESGKIPAAIVEKYLELEKSAVFRWLLQFGGFR 153

Query: 151 ERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWL 210
           ERLLADDLFLAKVAMECGVG+FTKTAAE ERRRENF KELDFV ADVVMAIIADFMLVWL
Sbjct: 154 ERLLADDLFLAKVAMECGVGIFTKTAAEYERRRENFFKELDFVIADVVMAIIADFMLVWL 213

Query: 211 PAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGT 270
           PAPT+SLRPPLA+S G IAKFF +CP+NAFQVA  GTS+S +QRIGAIVRNG+KLFAVGT
Sbjct: 214 PAPTVSLRPPLAVSAGAIAKFFHSCPENAFQVALAGTSFSFLQRIGAIVRNGSKLFAVGT 273

Query: 271 SASLVGWCRHNECFD 285
           ++SLVG    N   +
Sbjct: 274 TSSLVGTLVTNAIIN 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413945208|gb|AFW77857.1| hypothetical protein ZEAMMB73_229307 [Zea mays]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 165/185 (89%)

Query: 92  NCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRE 151
           N  EA+F LA+ GR L  LP DLA A+E GR+P  IV+R+++LE SPVFRWLL FGGF+E
Sbjct: 105 NRREALFVLAQLGRKLESLPADLAAAVEGGRIPGEIVRRFVDLEASPVFRWLLQFGGFKE 164

Query: 152 RLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLP 211
           RLLADDLFL KVA+ECGVG+FTKTAAE E+RRENF KELDFV ADVVMAI+ADFMLVWLP
Sbjct: 165 RLLADDLFLTKVAIECGVGIFTKTAAEYEKRRENFVKELDFVIADVVMAIVADFMLVWLP 224

Query: 212 APTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTS 271
           APT+SL+PPLAM++G IAKFF+NCPDNAFQVA +GTSYSL+QR+GAI+RNGAKLFAVGTS
Sbjct: 225 APTVSLQPPLAMNSGAIAKFFYNCPDNAFQVALSGTSYSLLQRVGAILRNGAKLFAVGTS 284

Query: 272 ASLVG 276
           ASL+G
Sbjct: 285 ASLIG 289

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226529786|ref|NP_001143763.1| uncharacterized protein LOC100276525 [Zea mays] gi|195626500|gb|ACG35080.1| hypothetical protein [Zea mays]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 142/185 (76%), Positives = 165/185 (89%)

Query: 92  NCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRE 151
           N  EA+F LA+ GR L  LP DLA A+E GR+P  IV+R+++LE SPVFRWLL FGGF+E
Sbjct: 105 NRREALFVLAQLGRKLESLPADLAAAVEGGRIPGEIVRRFVDLEASPVFRWLLQFGGFKE 164

Query: 152 RLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLP 211
           RLLADDLFL KVA+ECGVG+FTKTAAE E+RRENF KELDFV ADVVMAI+ADFMLVWLP
Sbjct: 165 RLLADDLFLTKVAIECGVGIFTKTAAEYEKRRENFVKELDFVIADVVMAIVADFMLVWLP 224

Query: 212 APTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTS 271
           APT+SL+PPLAM++G IAKFF+NCPDNAFQVA +GTSYSL+QR+GAI+RNGAKLFAVGTS
Sbjct: 225 APTVSLQPPLAMNSGAIAKFFYNCPDNAFQVALSGTSYSLLQRVGAILRNGAKLFAVGTS 284

Query: 272 ASLVG 276
           ASL+G
Sbjct: 285 ASLIG 289

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242087801|ref|XP_002439733.1| hypothetical protein SORBIDRAFT_09g019180 [Sorghum bicolor] gi|241945018|gb|EES18163.1| hypothetical protein SORBIDRAFT_09g019180 [Sorghum bicolor]

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 143/185 (77%), Positives = 165/185 (89%)

Query: 92  NCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRE 151
           N  EA+F LA+ GR L  LP DLA A+E GR+PA IV+R+++LE SPVFRWLL FGGF+E
Sbjct: 131 NRREALFVLAQLGRKLESLPADLAAAVEGGRIPAEIVRRFVDLEASPVFRWLLQFGGFKE 190

Query: 152 RLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLP 211
           RLLADDLFL KVA+ECGVG+FTKTAAE E+RRENF KELDFV ADVVMAI+ADFMLVWLP
Sbjct: 191 RLLADDLFLTKVAIECGVGIFTKTAAEYEKRRENFVKELDFVIADVVMAIVADFMLVWLP 250

Query: 212 APTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTS 271
           APT+SL+PPLA+++G IAKFF+NCPDNAFQVA +GTSYSL+QR GAI+RNGAKLFAVGTS
Sbjct: 251 APTVSLQPPLAVNSGAIAKFFYNCPDNAFQVALSGTSYSLLQRAGAILRNGAKLFAVGTS 310

Query: 272 ASLVG 276
           ASLVG
Sbjct: 311 ASLVG 315

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125552186|gb|EAY97895.1| hypothetical protein OsI_19813 [Oryza sativa Indica Group]

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/189 (77%), Positives = 163/189 (86%)

Query: 88  AGFHNCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFG 147
           A  H   EA+F LA+ GR L  LP DLA AIE GRVP  IV+R+ +LEKS +FRWLL FG
Sbjct: 11  AASHPTREALFVLAQLGRKLESLPADLAAAIEGGRVPGEIVQRFADLEKSGLFRWLLQFG 70

Query: 148 GFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFML 207
           GF+ERLLADDLFLAKVAMECGVG+FTKTAAE ERRRENF KELDFV ADVVMAI+ADFML
Sbjct: 71  GFKERLLADDLFLAKVAMECGVGIFTKTAAEYERRRENFVKELDFVIADVVMAIVADFML 130

Query: 208 VWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFA 267
           VWLPAPT+SL+PPLA++ G IAKFF NCPDNAFQVA  GTSYSL+QR+GAI+RNGAKLFA
Sbjct: 131 VWLPAPTVSLQPPLAVNAGSIAKFFHNCPDNAFQVALAGTSYSLLQRVGAIMRNGAKLFA 190

Query: 268 VGTSASLVG 276
           VGTSASL+G
Sbjct: 191 VGTSASLIG 199

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:505006615	386	AT5G12470 "AT5G12470" [Arabido	0.649	0.479	0.729	4.3e-70
TAIR|locus:2063136	735	AT2G40400 [Arabidopsis thalian	0.638	0.247	0.376	2.1e-26
TAIR|locus:2078446	745	AT3G56140 "AT3G56140" [Arabido	0.638	0.244	0.366	3.5e-26
TAIR|locus:2158155	433	RER1 "AT5G22790" [Arabidopsis	0.585	0.385	0.302	2.4e-13
TAIR|locus:2065649	432	LCD1 "AT2G37860" [Arabidopsis	0.582	0.384	0.279	1.7e-10
TAIR|locus:2077838	337	AT3G08640 "AT3G08640" [Arabido	0.424	0.359	0.353	3e-09
TAIR|locus:2077828	339	AT3G08630 "AT3G08630" [Arabido	0.477	0.401	0.344	3e-09
TAIR|locus:2176826	521	AT5G24690 "AT5G24690" [Arabido	0.578	0.316	0.24	4e-05

TAIR|locus:505006615 AT5G12470 "AT5G12470" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 135/185 (72%), Positives = 160/185 (86%)

Query:    92 NCTEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRE 151
             N  EA+  L ++G  L  LPKDLA AIEAGR+P +++ R+LEL+KS V RWL+ FGGFRE
Sbjct:   101 NRNEAMLLLKESGIELESLPKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQFGGFRE 160

Query:   152 RLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLP 211
             RLLADDLF+AK+AMECGVG+FTKTAAE ERRRENF  EL+ VFADV MAIIADFMLV+LP
Sbjct:   161 RLLADDLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLP 220

Query:   212 APTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTS 271
             APT+SLRPPLA++ G I+KFF NCPDNAFQVA +GTSY+L+QR+GAI RNGAKLFAVGT+
Sbjct:   221 APTVSLRPPLALTAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTT 280

Query:   272 ASLVG 276
             +SLVG
Sbjct:   281 SSLVG 285

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2063136 AT2G40400 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.1e-26, P = 2.1e-26
 Identities = 72/191 (37%), Positives = 105/191 (54%)

Query:    92 NC---TEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLN-FG 147
             NC    E    +  AGR    LP+D+   ++ G V   I++ + +LE+ P+   L   F 
Sbjct:   407 NCFDRAEIARVMNAAGRRRDALPQDIQKGLDLGLVSPEILQNFFDLEQYPLISELTQRFQ 466

Query:   148 GFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFML 207
             GFRERLLAD  FL ++A+E  + + T   A+ E+R+ENF +ELD+V  D V A + DF  
Sbjct:   467 GFRERLLADPKFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFT 526

Query:   208 VWLPAPTISLRPPLAMSTGP-----IAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNG 262
             VWLPAPT+S       + GP     +     + PDNAFQ +  G  ++L  RI +++  G
Sbjct:   527 VWLPAPTLSFISYADETIGPNSIDALRGLLGSIPDNAFQKSLGGQEWTLSLRIASVIIGG 586

Query:   263 AKLFAVGTSAS 273
              KL  VG  +S
Sbjct:   587 LKLAGVGVVSS 597

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2078446 AT3G56140 "AT3G56140" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-26, P = 3.5e-26
 Identities = 70/191 (36%), Positives = 103/191 (53%)

Query:    92 NC---TEAIFALAKAGRTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLN-FG 147
             NC    E    +  AGR    LP D+   ++ G V   +++   +LE+ P+   L   F 
Sbjct:   416 NCFDRAEIARVMNAAGRRRDALPPDIQNGLDLGLVSPEVLQNLFDLEQYPLISELTQRFQ 475

Query:   148 GFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFML 207
             GFRERLLAD  FL ++A+E  + + T   A+ E+R+ENF +E+D+V  D V   + DF  
Sbjct:   476 GFRERLLADPKFLNRLAIEEAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFT 535

Query:   208 VWLPAPTISLRPPLAMSTGP-----IAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNG 262
             VWLPAPT+S       +TGP     +     + PDNAFQ +  G  ++L  RI +++  G
Sbjct:   536 VWLPAPTLSFLSYADETTGPDSIDALRGLLGSIPDNAFQKSLAGREWNLNLRIASVIVGG 595

Query:   263 AKLFAVGTSAS 273
              KL  VG  +S
Sbjct:   596 LKLAGVGVVSS 606

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR|locus:2158155 RER1 "AT5G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 52/172 (30%), Positives = 82/172 (47%)

Query:   110 LPKDLAGAIEAGRVPAAIVKRYLELEKS--PVFRWLLNFGGFRERLLADDLFLAKVAMEC 167
             LP+D+  A ++  +    + RYL+L+ S  P+   + +    R R+LAD  FL KV  E 
Sbjct:   165 LPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAMLRNRMLADPSFLFKVGTEV 224

Query:   168 GVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGP 227
              +     T AE+++R E+F  E +   AD+++ ++ D  LV L AP   +  P   STG 
Sbjct:   225 AIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVGLLAPYARIGKPSVASTGL 284

Query:   228 IAKFFFNC---PDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVG 276
                    C   P + F+    G  +S+ QRI      G    +VG    L+G
Sbjct:   285 FKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIG 336

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2065649 LCD1 "AT2G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 48/172 (27%), Positives = 84/172 (48%)

Query:   110 LPKDLAGAIEAGRVPAAIVKRYLELEKSP-VFRWLL-NFGGFRERLLADDLFLAKVAMEC 167
             LP D+  A +   +   ++ RYL+L+ S  +  + + ++   R R+LAD  FL K+  E 
Sbjct:   165 LPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEI 224

Query:   168 GVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGP 227
              +     T AE+++R ++F  E +   AD+++  + +  LV + AP +    P A S G 
Sbjct:   225 VIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSA-SPGF 283

Query:   228 IAK--FFFNC-PDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVG 276
             + +  F +N  P + F+    G  +S  QR+      G    AVG    +VG
Sbjct:   284 LGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVG 335

GO:0003674 "molecular_function" evidence=ND

GO:0048366 "leaf development" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2077838 AT3G08640 "AT3G08640" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 46/130 (35%), Positives = 70/130 (53%)

Query:   148 GFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFS-KELDFVFADVVMAIIADFM 206
             G+R R+ AD  F  KV ME  VG+      ++  R  NF   ELDFVF+ +V+  I +F+
Sbjct:   107 GWRSRVAADPQFPFKVLMEEIVGLSACVLGDMASR-PNFGLNELDFVFSTLVVGSILNFV 165

Query:   207 LVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLF 266
             L+++ APT +    L  S+  +   F NCP +     F   S++++ R G +V  G    
Sbjct:   166 LMYMLAPTAAT---LG-SSQTLPGIFRNCPSSHM---FEQGSFTVMNRFGTLVYKGMVFA 218

Query:   267 AVGTSASLVG 276
             +VG +A LVG
Sbjct:   219 SVGLAAGLVG 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2077828 AT3G08630 "AT3G08630" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 50/145 (34%), Positives = 71/145 (48%)

Query:   133 ELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFS-KELD 191
             E E SP     L   G+R R+ AD  F  KV ME  VGV      ++  R  NF   ELD
Sbjct:    89 EEESSPWGPLGLFIQGWRSRVAADSQFPFKVLMEMLVGVSANVLGDMASR-PNFGLNELD 147

Query:   192 FVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSL 251
             FVF+ +V+  I +F L++L AP+         S+  +   F +CP +     F   +++L
Sbjct:   148 FVFSTLVVGSILNFTLMYLLAPSAISHG----SSNLLPGIFRSCPSSHM---FEQGNFTL 200

Query:   252 IQRIGAIVRNGAKLFAVGTSASLVG 276
             + R G +V  G     VG +A LVG
Sbjct:   201 MNRFGTLVYKGMVFATVGLAAGLVG 225

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2176826 AT5G24690 "AT5G24690" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 42/175 (24%), Positives = 75/175 (42%)

Query:   105 RTLGDLPKDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFG-------GFRERLLADD 157
             +T+ DLP  L  A E G V +A + ++L +   P    +++          F  R+LAD 
Sbjct:   186 KTMMDLPAGLRQAYEMGLVSSAQMVKFLAINARPTTTRMISRALPQGLSRAFVGRMLADP 245

Query:   158 LFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISL 217
              FL K+ +E    V      E++ R+    +E D    +V+     +   VWL AP  S 
Sbjct:   246 AFLYKLLLEQAATVGCSVWWEVKNRKNRLKEEWDLALINVLTVSACNAAAVWLLAPCRSY 305

Query:   218 RPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSA 272
                       +       P+N F++++    + L +R  ++    A+L  +G +A
Sbjct:   306 GNTFRFD---LQNTLQKLPNNLFEMSYPLREFDLQKRFHSLFYKAAELSILGLAA 357


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.428    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      285       260   0.00089  114 3  11 22  0.38    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  187 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.03u 0.09s 19.12t   Elapsed:  00:00:00
  Total cpu time:  19.03u 0.09s 19.12t   Elapsed:  00:00:00
  Start:  Mon May 20 19:12:27 2013   End:  Mon May 20 19:12:27 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_I1877 hypothetical protein (382 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
pfam11891	179	pfam11891, DUF3411, Domain of unknown function (DU	2e-53
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	1e-04

>gnl|CDD|221294 pfam11891, DUF3411, Domain of unknown function (DUF3411)

 Score =  171 bits (436), Expect = 2e-53
 Identities = 59/126 (46%), Positives = 74/126 (58%)

Query: 151 ERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWL 210
           ERLLAD  FL K+AME  + +   T AE+E+R ENF  E D V AD+++  + +F LV+L
Sbjct: 1   ERLLADPSFLFKLAMEEVIDICAATVAEVEKRGENFWAEFDLVAADLLVGSVVNFALVYL 60

Query: 211 PAPTISLRPPLAMSTGPIAKFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGT 270
            APT S     A   G + KF  + P N F+    G SYSL QR G +   GAKL AVG 
Sbjct: 61  LAPTRSFGSTAAEMAGGLRKFLGSLPSNVFEKGLPGRSYSLQQRFGTVFYKGAKLAAVGF 120

Query: 271 SASLVG 276
            A LVG
Sbjct: 121 IAGLVG 126

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. Length = 179

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 17/103 (16%)

Query: 4   ASFSNLPTRAFSPSYHNCH------QSFVIKNITRQIPNPHLINFSLTCTSST------- 50
            S S + + A S S  +         S   ++ TR      +   +    SS+       
Sbjct: 2   RSSSTMVSAAASTSLSSSRPQLSSFSSRSPQSATRSPRASSIKCSASASASSSATSSSAS 61

Query: 51  ----PNKNKTCRPTVIFASGGGKGGGGSWGSGGGGGGGDDDAG 89
                         +    GGG GG G +G GGGGGGG     
Sbjct: 62  LVANGAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGW 104

Length = 796

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PF11891	180	DUF3411: Domain of unknown function (DUF3411); Int	100.0
COG4907	595	Predicted membrane protein [Function unknown]	88.71

>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=6e-56  Score=389.89  Aligned_cols=135  Identities=53%  Similarity=0.720  Sum_probs=130.9

Q ss_pred             hhhhcchhhHHHHHHHhhhhhhhhHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCCCcccccc-hhh
Q 023225          151 ERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTG-PIA  229 (285)
Q Consensus       151 ~RlLADP~FlfKl~~E~~I~v~~~~~aE~~~Rge~F~~ElDfV~sdlv~g~i~nfaLV~LLAPt~s~g~~~~~sag-~l~  229 (285)
                      |||||||+|||||++||+||++|+++|||++|||+||+|||||+||+++++|+||+||||||||++++++++...| .++
T Consensus         1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~~~~~~   80 (180)
T PF11891_consen    1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSPGGGLQ   80 (180)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCcccccccchHHH
Confidence            7999999999999999999999999999999999999999999999999999999999999999999998875544 899


Q ss_pred             hHhhcCCchhhhcccCCCCCchhhhHHHHhhccceehhhhhhhhhhHHHhhhcccC
Q 023225          230 KFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGWCRHNECFD  285 (285)
Q Consensus       230 k~~~~lP~n~Fq~~~pg~~fsl~qR~~a~v~KGa~l~~VG~~aGlvG~glsN~Lm~  285 (285)
                      |++++||+|+||+++||++||++||++||+|||++|++||++||++||++||+||+
T Consensus        81 ~~~~~~P~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~  136 (180)
T PF11891_consen   81 KFLGSLPNNAFQKGYPGRSFSLAQRIGAFVYKGAKLAAVGFIAGLVGTGLSNALIA  136 (180)
T ss_pred             HHHHhChHHHhccCCCCCcccHHHHHHHHHHcchHhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999973

This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.

>COG4907 Predicted membrane protein [Function unknown]

Probab=88.71  E-value=0.26  Score=50.63  Aligned_cols=9  Identities=33%  Similarity=0.527  Sum_probs=3.8

Q ss_pred             eccccCCCC
Q 023225           28 KNITRQIPN   36 (285)
Q Consensus        28 ~~~~~~~~~   36 (285)
                      ||-+|--.+
T Consensus       551 ~nysr~~~~  559 (595)
T COG4907         551 NNYSRSFNN  559 (595)
T ss_pred             cchhhhhcc
Confidence            444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
2pk2_A	358	Cyclin-T1, protein TAT; TAR, twinning, transcripti	91.17

>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C

Probab=91.17  E-value=0.039  Score=51.65  Aligned_cols=8  Identities=0%  Similarity=-0.093  Sum_probs=3.2

Q ss_pred             ccCCCCCc
Q 023225           31 TRQIPNPH   38 (285)
Q Consensus        31 ~~~~~~~~   38 (285)
                      .+.+..++
T Consensus       246 ~~~~~~L~  253 (358)
T 2pk2_A          246 EKTPNRLK  253 (358)
T ss_dssp             TTCTTHHH
T ss_pred             HhCccccc
Confidence            34444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00