Citrus Sinensis ID: 023243

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MEVSLNTENEAQATTSSSHPCSARESTSSSSSSPTKTVKSFKRIIIQEEKTKTASDNDHHESKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAAAIVSLPKGQELTNPPSPASTVTSHDTQESASSPLLNNDDDDAFFDLPDLLLDGRHQMDELWDSFSWQQLTEPVSEPVGFGFCNSCVLYTCKEMLPYHSSGCDDDSMTILFWVSLSHYYTCKNISDCRTN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccEEEEEEEEcccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHccccEEccccHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHccccccccccccHccccccccccccEccccEEEEcHHHHcccccccccccccEEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
mevslnteneaqattssshpcsarestssssssptktvKSFKRIIIQEektktasdndhhesktrkvsdlkhptyrgvrmrqwgkwvseireprkksriwlgtfatpemAARAHDVAALAIKGhsaylnfpelahelprpatsspKDIQAAAAKAAAIVslpkgqeltnppspastvtshdtqesasspllnnddddaffdlpdllldgrHQMDELWDSfswqqltepvsepvgfgfcnscvlytckemlpyhssgcdddsmtILFWVSLSHYytcknisdcrtn
Flexible Loop (DISEMBL)
mevslnteneaqattssshpcsarestssssssptktvksfKRIIIQeektktasdndhhesktrkvsdlkhptyrgvrmrqwgkwvseireprkksriWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAAAIVSLPKGQELTNPPSPASTVTSHDTQESASSPLLNNDDDDAFFDLPDLLLDGRHQMDELWDSFSWQQLTEPVSEPVGFGFCNSCVLYTCKEMLPYHSSGCDDDSMTILFWVSLSHYytcknisdcrtn
Low Complexity Region (SEG)
MEVSLNTENEAQATTSSSHPCSAREstssssssptktvksfkRIIIQEEKTKTASDNDHHESKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQaaaakaaaIVSLPKGQELTNPPSPASTVTSHDTQESASSpllnnddddaffdlpdllldGRHQMDELWDSFSWQQLTEPVSEPVGFGFCNSCVLYTCKEMLPYHSSGCDDDSMTILFWVSLSHYYTCKNISDCRTN
Disordered region (IsUnstruct)
*************************************************************************TYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL****************************************************************AFFDLPDLLLDGRHQMDELWDSFSWQQLTEPVSEPVGFGFCNSCVLYTCKEML***********************************
Disordered Region (DISOPRED)
***************************************************************************RGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHEL************AAAAKAA***************************************DDAFFDLPDLLLDGRHQMDELWDSFSWQQLTEPVSEPVGFGFCNSCVLYTCKEML**********SMTILFWVSLSHYYTCKNISDC***
Disordered Region (DISEMBL)
***************************************SFKRIIIQEEKT*****************DLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAAAIVSLPKGQ**********************SPLLNNDDDDAFFDLPDLLLDGRHQMDELWDSFSWQQLTEPVSEPVGFGFCNSCVLYTCKEMLPYHSSGCDDDSMTILFWVSLSHYYTCKNISDCRTN
Disordered Region (DISPRO)
*********************************************************************LKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAAA********************************LLNNDDDDAFFDLPDLLLDGRHQMDELWDSFSWQQLTEPVSEPVGFGFCNSCVLYTCKEMLPYHSSGCDDDSMTILFWVSLSHYYTCKNISDC***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVSLNTENEAQATTSSSHPCSARESTSSSSSSPTKTVKSFKRIIIQEEKTKTASDNDHHESKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAAAIVSLPKGQELTNPPSPASTVTSHDTQESASSPLLNNDDDDAFFDLPDLLLDGRHQMDELWDSFSWQQLTEPVSEPVGFGFCNSCVLYTCKEMLPYHSSGCDDDSMTILFWVSLSHYYTCKNISDCRTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q9ZQP3	194	Ethylene-responsive trans	yes	no	0.515	0.757	0.668	9e-47
Q9SUK8	179	Ethylene-responsive trans	no	no	0.470	0.748	0.606	7e-40
Q8LBQ7	295	Ethylene-responsive trans	no	no	0.501	0.484	0.529	9e-39
Q9LYD3	236	Dehydration-responsive el	no	no	0.4	0.483	0.644	3e-37
Q39127	218	Ethylene-responsive trans	no	no	0.392	0.513	0.658	3e-36
Q9M210	256	Ethylene-responsive trans	no	no	0.656	0.730	0.467	4e-35
Q9M080	221	Ethylene-responsive trans	no	no	0.308	0.398	0.75	6e-35
Q9LU18	236	Ethylene-responsive trans	no	no	0.407	0.491	0.666	5e-33
Q52QU1	225	Ethylene-responsive trans	no	no	0.266	0.337	0.802	9e-30
Q1ECI2	192	Ethylene-responsive trans	no	no	0.287	0.427	0.682	9e-29

>sp|Q9ZQP3|ERF38_ARATH Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1

 Score =  187 bits (474), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 120/154 (77%), Gaps = 7/154 (4%)

Query: 71  KHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNF 130
           KHP +RGVRMRQWGKWVSEIREP+KKSRIWLGTF+T EMAARAHDVAALAIKG SA+LNF
Sbjct: 41  KHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNF 100

Query: 131 PELAHELPRPATSSPKDIQAAAAKAAAIVSLPKGQELTNPPSPASTVTSHDTQESASSPL 190
           PELA+ LPRPA++ PKDIQAAAA AAA V++    E T+ PSP+ TVT        SSP 
Sbjct: 101 PELAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVE-TSSPSPSPTVT------ETSSPA 153

Query: 191 LNNDDDDAFFDLPDLLLDGRHQMDELWDSFSWQQ 224
           +    DDAF DLPDLLL+  H +D  WDSF +++
Sbjct: 154 MIALSDDAFSDLPDLLLNVNHNIDGFWDSFPYEE 187

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score =  164 bits (415), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 94/155 (60%), Positives = 110/155 (70%), Gaps = 21/155 (13%)

Query: 71  KHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNF 130
           K P +RGVRMRQWGKWVSEIREPRKKSRIWLGTF+TPEMAARAHDVAALAIKG SA+LNF
Sbjct: 36  KQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNF 95

Query: 131 PELAHELPRPATSSPKDIQAAAAKAAAIVSLPKGQELTNPPSPASTVTSHDTQESASSPL 190
           PELA+ LPRPA++ PKDIQ AAA AAA+          +  +P S  ++  +   A    
Sbjct: 96  PELAYHLPRPASADPKDIQEAAAAAAAV----------DWKAPESPSSTVTSSPVA---- 141

Query: 191 LNNDDDDAFFDLPDLLLD--GRHQMDELWDSFSWQ 223
                DDAF DLPDLLLD    ++ D  WDSF ++
Sbjct: 142 -----DDAFSDLPDLLLDVNDHNKNDGFWDSFPYE 171

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  160 bits (405), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 103/168 (61%), Gaps = 25/168 (14%)

Query: 71  KHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNF 130
           KHPTYRGVRMR WGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAALAIKG +AYLNF
Sbjct: 96  KHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNF 155

Query: 131 PELAHELPRPATSSPKDIQAAAAKAAAI-------VSLPKGQELTNPPSPASTVT----- 178
           P+LA ELPRP T+SPKDIQAAA+ AA         VS  +  E+       + V      
Sbjct: 156 PKLAGELPRPVTNSPKDIQAAASLAAVNWQDSVNDVSNSEVAEIVEAEPSRAVVAQLFSS 215

Query: 179 -------------SHDTQESASSPLLNNDDDDAFFDLPDLLLDGRHQM 213
                        S  +  S S+    + +++  FDLPDL  D    M
Sbjct: 216 DTSTTTTTQSQEYSEASCASTSACTDKDSEEEKLFDLPDLFTDENEMM 263

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 90/118 (76%), Gaps = 4/118 (3%)

Query: 43  RIIIQEEKTKTASDN---DHHESKTRKVSD-LKHPTYRGVRMRQWGKWVSEIREPRKKSR 98
           ++++   ++ + SD    +  E KT++  D  KHP YRGVRMR WGKWVSEIREPRKKSR
Sbjct: 15  QLLVPNSESDSVSDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSR 74

Query: 99  IWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAA 156
           IWLGTF TPEMAARAHDVAAL+IKG +A LNFPELA   PRP + SP+DIQ AA KAA
Sbjct: 75  IWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAA 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 88/117 (75%), Gaps = 5/117 (4%)

Query: 45  IIQEEKTKT----ASDNDHHESKTRKVSD-LKHPTYRGVRMRQWGKWVSEIREPRKKSRI 99
           +I  E TK+    A   ++ E K + V D  KHP YRGVR R WGKWVSEIREPRKKSRI
Sbjct: 1   MIASESTKSWEASAVRQENEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRI 60

Query: 100 WLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAA 156
           WLGTF +PEMAARAHDVAAL+IKG SA LNFP+LA   PRP++ SP+DIQ AA KAA
Sbjct: 61  WLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAA 117

Putative transcriptional activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M210|ERF35_ARATH Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/214 (46%), Positives = 125/214 (58%), Gaps = 27/214 (12%)

Query: 42  KRIIIQEEKTKTASDNDHHESKTRKVSDLKHPT-YRGVRMRQWGKWVSEIREPRKKSRIW 100
           KR ++Q+      +D+     K+    D K+PT YRGVRMR WGKWVSEIREPRKKSRIW
Sbjct: 43  KRSLVQD------NDSGGKRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIW 96

Query: 101 LGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAAAIV- 159
           LGT+ T EMAARAHDVAALAIKG+S +LNFPEL+  LPRP + SPKDIQAAA KAA    
Sbjct: 97  LGTYPTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAAEATT 156

Query: 160 ------------SLPKGQELTNPPSPASTVTSHDTQESASSPLLNNDDDDAFFDLPDLLL 207
                        L   + L+   S  S+     +  S +S      +++  FDLPDL  
Sbjct: 157 WHKPVIDKKLADELSHSELLSTAQSSTSSSFVFSSDTSETSSTDKESNEETVFDLPDLFT 216

Query: 208 DGRHQMDELW----DSFSWQQLTEPVSEPVGFGF 237
           DG    ++ +     +F+WQ   E   E VGF F
Sbjct: 217 DGLMNPNDAFCLCNGTFTWQLYGE---EDVGFRF 247

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M080|ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1

 Score =  147 bits (372), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 74/88 (84%)

Query: 71  KHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNF 130
           K P YRGVRMR WGKWVSEIREPRKKSRIWLGTF T EMA RAHDVAA++IKG SA LNF
Sbjct: 15  KQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNF 74

Query: 131 PELAHELPRPATSSPKDIQAAAAKAAAI 158
           PEL+  LPRP + SP+D++AAA KAA +
Sbjct: 75  PELSKLLPRPVSLSPRDVRAAATKAALM 102

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU18|ERF36_ARATH Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 90/117 (76%), Gaps = 1/117 (0%)

Query: 70  LKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLN 129
           ++HP YRGVRMR WGKWVSEIR+PRKK+RIWLGTF T +MAARAHDVAAL IKG SA LN
Sbjct: 56  MQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLN 115

Query: 130 FPELAHELPRPATSSPKDIQAAAAKAAAIVSLPKGQELTNPP-SPASTVTSHDTQES 185
           FPELA   PRPA+SSP DIQ AAA+AAA+V   K  E    P +P S+ +S+   ES
Sbjct: 116 FPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDEAPEAPPSSESSYVAAES 172

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QU1|ERF42_ARATH Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1

 Score =  130 bits (328), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 61/76 (80%), Positives = 64/76 (84%)

Query: 74  TYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL 133
            YRG RMR WGKWVSEIREPRKKSRIWLGTF T EMAARAHDVAAL+IKG SA LNFPEL
Sbjct: 25  VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPEL 84

Query: 134 AHELPRPATSSPKDIQ 149
           A  LPRP + S +DIQ
Sbjct: 85  ADFLPRPVSLSQQDIQ 100

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECI2|ERF23_ARATH Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1

 Score =  127 bits (319), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 66/82 (80%)

Query: 68  SDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAY 127
           S  +HP Y GVR R+WGKWVSEIREPRKKSRIWLG+F  PEMAA+A+DVAA  +KG  A 
Sbjct: 38  STTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQ 97

Query: 128 LNFPELAHELPRPATSSPKDIQ 149
           LNFPE   +LPRP+T +P+DIQ
Sbjct: 98  LNFPEEIEDLPRPSTCTPRDIQ 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
224138644	221	AP2/ERF domain-containing transcription	0.571	0.737	0.635	2e-48
297823371	189	hypothetical protein ARALYDRAFT_482537 [	0.578	0.873	0.601	4e-46
224071143	225	AP2/ERF domain-containing transcription	0.663	0.84	0.567	3e-45
116831137	195	unknown [Arabidopsis thaliana]	0.515	0.753	0.668	5e-45
15227471	194	ethylene-responsive transcription factor	0.515	0.757	0.668	6e-45
359496490	225	PREDICTED: ethylene-responsive transcrip	0.635	0.804	0.557	7e-45
300079000	264	ethylene response factor 2 [Actinidia de	0.610	0.659	0.597	2e-43
357482105	181	Ethylene-responsive transcription factor	0.519	0.817	0.589	4e-43
255541118	276	Transcriptional factor TINY, putative [R	0.638	0.659	0.513	3e-42
60547461	219	HvCBF7 [Hordeum vulgare subsp. vulgare]	0.466	0.607	0.604	3e-42

>gi|224138644|ref|XP_002326654.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372079|gb|ABQ62971.1| TINY-like protein [Populus trichocarpa] gi|222833976|gb|EEE72453.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/173 (63%), Positives = 130/173 (75%), Gaps = 10/173 (5%)

Query: 71  KHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNF 130
           +HP+YRGVRMRQWGKWVSEIR+P+KKSRIWLGTF TPEMAARAHDVAAL IKGHSA+LNF
Sbjct: 38  RHPSYRGVRMRQWGKWVSEIRQPKKKSRIWLGTFPTPEMAARAHDVAALTIKGHSAHLNF 97

Query: 131 PELAHELPRPATSSPKDIQAAAAKAAAIV--SLPKGQ------ELTNPPSPASTVTSHDT 182
           PE+AHE PRPA+SSPKDIQAAAA AA +   +  KG+      EL  P SP ST+ S++T
Sbjct: 98  PEIAHEFPRPASSSPKDIQAAAALAATLSCKTSQKGRETEAEDELMLPHSPDSTLASNET 157

Query: 183 QESASSPLLNNDDDDAFFDLPDLLLDGRHQMDELWDSFSWQQLTEPVSEPVGF 235
           QE + S  L +D DD F DLPD+L D ++Q DE     SW QL  P +  +GF
Sbjct: 158 QEYSLSSPLRDDGDDTFIDLPDILQD-QYQFDEFCYLSSW-QLVGPETSDIGF 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823371|ref|XP_002879568.1| hypothetical protein ARALYDRAFT_482537 [Arabidopsis lyrata subsp. lyrata] gi|297325407|gb|EFH55827.1| hypothetical protein ARALYDRAFT_482537 [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/183 (60%), Positives = 131/183 (71%), Gaps = 18/183 (9%)

Query: 42  KRIIIQEEKTKTASDNDHHESKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWL 101
           +R +    K K A D+D      + VS  KHPT+RGVRMRQWGKWVSEIREP+KKSRIWL
Sbjct: 18  ERRVKNNPKKKRAKDDDE-----KVVS--KHPTFRGVRMRQWGKWVSEIREPKKKSRIWL 70

Query: 102 GTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAAAIVSL 161
           GTF+T EMAARAHDVAALAIKG SA+LNFPELA+ LPRPA++ PKDIQAAAA AAA + +
Sbjct: 71  GTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQAAAAAAAAAMDV 130

Query: 162 PKGQELTNPPSPASTVTSHDTQESASSPLLNNDDDDAFFDLPDLLLDGRHQMDELWDSFS 221
                 T+ PSP+ TVT        SSP +    DDAF DLPDLLL+  H +D  WDSF 
Sbjct: 131 E-----TSSPSPSPTVT------ETSSPAMTALSDDAFSDLPDLLLNVNHNIDGFWDSFP 179

Query: 222 WQQ 224
           +++
Sbjct: 180 YEE 182

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071143|ref|XP_002303364.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372077|gb|ABQ62970.1| TINY-like protein [Populus trichocarpa] gi|222840796|gb|EEE78343.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/201 (56%), Positives = 141/201 (70%), Gaps = 12/201 (5%)

Query: 46  IQEEKTKTASDNDHHES---KTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLG 102
           + +  +K   D +++ES     R+ +  +HP+YRGVRMRQWGKWVSEIR+P+KKSRIWLG
Sbjct: 8   VSQNSSKRNQDPNNYESDKQAKRRGNAGRHPSYRGVRMRQWGKWVSEIRQPKKKSRIWLG 67

Query: 103 TFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAAAIV--S 160
           TF+TPEMAARAHDVAAL IKGHSA+LNFPELAHE PRPA+SSPKDIQAAAA AA +   +
Sbjct: 68  TFSTPEMAARAHDVAALTIKGHSAHLNFPELAHEFPRPASSSPKDIQAAAALAATLSCKT 127

Query: 161 LPKGQ------ELTNPPSPASTVTSHDTQESASSPLLNNDDDDAFFDLPDLLLDGRHQMD 214
             KG+      EL  P S  ST+ S++TQE + +  L +DDDD F DLPD+L    HQ D
Sbjct: 128 SQKGRETEAEAELMLPRSLDSTLASNETQEYSLNSPLRDDDDDTFIDLPDILQGISHQFD 187

Query: 215 ELWDSFSWQQLTEPVSEPVGF 235
           E      WQ +    S+ VGF
Sbjct: 188 EFCYLSPWQPVGTETSD-VGF 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831137|gb|ABK28523.1| unknown [Arabidopsis thaliana]

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 120/154 (77%), Gaps = 7/154 (4%)

Query: 71  KHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNF 130
           KHP +RGVRMRQWGKWVSEIREP+KKSRIWLGTF+T EMAARAHDVAALAIKG SA+LNF
Sbjct: 41  KHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNF 100

Query: 131 PELAHELPRPATSSPKDIQAAAAKAAAIVSLPKGQELTNPPSPASTVTSHDTQESASSPL 190
           PELA+ LPRPA++ PKDIQAAAA AAA V++    E T+ PSP+ TVT        SSP 
Sbjct: 101 PELAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVE-TSSPSPSPTVT------ETSSPA 153

Query: 191 LNNDDDDAFFDLPDLLLDGRHQMDELWDSFSWQQ 224
           +    DDAF DLPDLLL+  H +D  WDSF +++
Sbjct: 154 MIALSDDAFSDLPDLLLNVNHNIDGFWDSFPYEE 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227471|ref|NP_181113.1| ethylene-responsive transcription factor ERF038 [Arabidopsis thaliana] gi|75267810|sp|Q9ZQP3.1|ERF38_ARATH RecName: Full=Ethylene-responsive transcription factor ERF038 gi|4263785|gb|AAD15445.1| putative AP2 domain transcription factor [Arabidopsis thaliana] gi|48479282|gb|AAT44912.1| putative AP2/EREBP transcription factor [Arabidopsis thaliana] gi|91806317|gb|ABE65886.1| AP2 domain-containing transcription factor [Arabidopsis thaliana] gi|107738130|gb|ABF83644.1| At2g35700 [Arabidopsis thaliana] gi|330254052|gb|AEC09146.1| ethylene-responsive transcription factor ERF038 [Arabidopsis thaliana]

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 120/154 (77%), Gaps = 7/154 (4%)

Query: 71  KHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNF 130
           KHP +RGVRMRQWGKWVSEIREP+KKSRIWLGTF+T EMAARAHDVAALAIKG SA+LNF
Sbjct: 41  KHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNF 100

Query: 131 PELAHELPRPATSSPKDIQAAAAKAAAIVSLPKGQELTNPPSPASTVTSHDTQESASSPL 190
           PELA+ LPRPA++ PKDIQAAAA AAA V++    E T+ PSP+ TVT        SSP 
Sbjct: 101 PELAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVE-TSSPSPSPTVT------ETSSPA 153

Query: 191 LNNDDDDAFFDLPDLLLDGRHQMDELWDSFSWQQ 224
           +    DDAF DLPDLLL+  H +D  WDSF +++
Sbjct: 154 MIALSDDAFSDLPDLLLNVNHNIDGFWDSFPYEE 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496490|ref|XP_003635248.1| PREDICTED: ethylene-responsive transcription factor ERF034-like [Vitis vinifera]

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/201 (55%), Positives = 131/201 (65%), Gaps = 20/201 (9%)

Query: 30  SSSSPTKTVKSFKRIIIQEEKTKTASDNDHHESKTRKVSD---LKHPTYRGVRMRQWGKW 86
           S  S T T  SFK I      T+ A   D H  K +  S+    KHPTYRGVR R WGKW
Sbjct: 6   SIQSETGTTSSFKGI------TQEAKSEDDHRKKVKGCSNDDRFKHPTYRGVRRRNWGKW 59

Query: 87  VSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPK 146
           VSEIREPRKKSRIWLG+FATPEMAARAHDVAALAIKGHSA+LNFPELAH+ PRP T SP+
Sbjct: 60  VSEIREPRKKSRIWLGSFATPEMAARAHDVAALAIKGHSAHLNFPELAHQFPRPETKSPE 119

Query: 147 DIQAAAAKAAAIVSLPKGQELTNP--------PSPASTVTSHDTQESASSPLLNNDDDDA 198
           DI+AAAA  AA+ + P+ +E  +         PS  S  +  DT+E   SP +   DD  
Sbjct: 120 DIRAAAA-KAAMFTHPRRREEADQAEVVGCHSPSSTSNTSCDDTKEPPPSPTVTTADDGT 178

Query: 199 FFDLPDLL--LDGRHQMDELW 217
           FFDLPDL   L   HQM +++
Sbjct: 179 FFDLPDLFPNLITDHQMTDIF 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300079000|gb|ADJ67431.1| ethylene response factor 2 [Actinidia deliciosa]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 129/189 (68%), Gaps = 15/189 (7%)

Query: 27  TSSSSSSPTKTVKSFKRIIIQEEKTKTASDNDHHESKTRKVSDLKHPTYRGVRMRQWGKW 86
            +S S S   T K  K I  Q    +T + N+H + + +   D KHPTYRGVR+R WGKW
Sbjct: 51  VNSLSQSTRSTPKEGKAIKGQRRVEETKNGNEHRK-RHKSGGDEKHPTYRGVRIRNWGKW 109

Query: 87  VSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPK 146
           VSEIREPRKKSRIWLGT+ T EMAARAHDVAA AIKG SAYLNFPELAHELPRPAT+SPK
Sbjct: 110 VSEIREPRKKSRIWLGTYPTAEMAARAHDVAARAIKGKSAYLNFPELAHELPRPATTSPK 169

Query: 147 DIQAAAAKAAAIVSLPKGQELTNPPSPAS----------TVTSHDTQESASSPLLNNDDD 196
           DIQAAAA AAA  SL  G+     PS A           + + + TQES +SP  +N DD
Sbjct: 170 DIQAAAAMAAA--SLFSGEATRAEPSRAGLPCSHSSTTLSSSENTTQESVNSP--SNHDD 225

Query: 197 DAFFDLPDL 205
           D FFDLPDL
Sbjct: 226 DTFFDLPDL 234

Source: Actinidia deliciosa

Species: Actinidia deliciosa

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482105|ref|XP_003611338.1| Ethylene-responsive transcription factor TINY [Medicago truncatula] gi|355512673|gb|AES94296.1| Ethylene-responsive transcription factor TINY [Medicago truncatula]

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/178 (58%), Positives = 118/178 (66%), Gaps = 30/178 (16%)

Query: 46  IQEEKTKTASDNDHHESKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFA 105
           I++ KTK   DN             KHP YRGVRMR WGKWVSEIREP+KKSRIWLGT+ 
Sbjct: 11  IEDNKTKNNGDNG------------KHPLYRGVRMRSWGKWVSEIREPKKKSRIWLGTYP 58

Query: 106 TPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAAAIVSLPKGQ 165
           TPEMAARAHDVAA AIKG SAYLNFPELA +LPRP T+SPKDIQAAAAKAA + SL + Q
Sbjct: 59  TPEMAARAHDVAAQAIKGSSAYLNFPELAQQLPRPTTNSPKDIQAAAAKAATMGSLHEAQ 118

Query: 166 ELTNPPSPASTVTSHDTQESASSPLLNNDDDDAFFDLPDLLLDGRHQMDEL-WDSFSW 222
           +             HD QE+       ND+DD F+DLPDLLLD      E  + S SW
Sbjct: 119 D-----------QDHDIQETL------NDEDDTFYDLPDLLLDSNKSSSEFHYSSMSW 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541118|ref|XP_002511623.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223548803|gb|EEF50292.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/222 (51%), Positives = 136/222 (61%), Gaps = 40/222 (18%)

Query: 49  EKTKTASDNDHHESKTRKVSD----LKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTF 104
           ++ +  S N++  S+ ++ SD     KHPTYRGVRMR WGKWVSEIREPRKKSRIWLGT+
Sbjct: 63  DRQELESGNNNESSRKKQKSDNNENAKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTY 122

Query: 105 ATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQAAAAKAAAIVS-LPK 163
            T EMAARAHDVAALAIKG+SAYLNFPELA  LPRPAT +PKDIQ AAAKAA  V+ L K
Sbjct: 123 PTAEMAARAHDVAALAIKGNSAYLNFPELALGLPRPATKAPKDIQVAAAKAATAVNFLEK 182

Query: 164 GQELTNPPSPASTVTSHDTQESASSPLL--------------------NNDDDDAFFDLP 203
            Q         S V +  +Q   SS L+                    +ND DD  FDLP
Sbjct: 183 TQ---------SDVEAGMSQAEGSSSLVIDNTRESTSSPSTATTIATTSNDSDDTLFDLP 233

Query: 204 DLLLDG--RHQMDELWDSFSWQQLTEP----VSEPVGFGFCN 239
           DL ++G  RH+ D L  S SWQ         + EP  + +CN
Sbjct: 234 DLFVEGIDRHKNDFLHYSPSWQLCAADTGFRLEEPYLWEYCN 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60547461|gb|AAX23704.1| HvCBF7 [Hordeum vulgare subsp. vulgare] gi|60547463|gb|AAX23705.1| HvCBF7 [Hordeum vulgare subsp. vulgare] gi|60547465|gb|AAX23706.1| HvCBF7 [Hordeum vulgare subsp. vulgare] gi|60593376|gb|AAX28954.1| HvCBF7 [Hordeum vulgare subsp. vulgare]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/162 (60%), Positives = 108/162 (66%), Gaps = 29/162 (17%)

Query: 63  KTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIK 122
           K R  +D +HPTYRGVRMR WGKWVSEIREPRKKSRIWLGTFAT EMAARAHDVAALAIK
Sbjct: 37  KKRARNDGRHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALAIK 96

Query: 123 GHSAYLNFPELAHELPRPATSSPKDIQ-------------AAAAKAAAIVSLPKGQELTN 169
           G +A+LNFP+LAHELPRPAT++PKD+Q             +A A A A    P G E   
Sbjct: 97  GRAAHLNFPDLAHELPRPATAAPKDVQAAAALAASADFPASATATANAGAKNPDGPE--- 153

Query: 170 PPSPASTVTSHDTQESASSPLLNNDDDDAFFDLPDLLLDGRH 211
            P+ AS  T  DT E            DA FDLPDLL D RH
Sbjct: 154 -PNAASASTPPDTAE------------DALFDLPDLLFDLRH 182

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.592	0.871	0.510	1.8e-39
TAIR|locus:2129111	179	AT4G16750 [Arabidopsis thalian	0.449	0.715	0.6	1.7e-36
TAIR|locus:2195985	244	AT1G77200 [Arabidopsis thalian	0.494	0.577	0.552	1.9e-35
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.505	0.488	0.540	2.2e-34
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.480	0.580	0.531	2.8e-34
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.491	0.593	0.531	2e-33
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.477	0.623	0.533	4.1e-33
TAIR|locus:2103301	256	AT3G60490 [Arabidopsis thalian	0.347	0.386	0.721	2.9e-32
TAIR|locus:2134128	221	AT4G32800 [Arabidopsis thalian	0.449	0.579	0.526	2.3e-30
TAIR|locus:2043495	225	ESE2 "ethylene and salt induci	0.308	0.391	0.727	4.4e-29

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 93/182 (51%), Positives = 112/182 (61%)

Query:    43 RIIIQEEKTKTASDNDHHESKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLG 102
             R +  + K K A D+D  + K   VS  KHP +RGVRMRQWGKWVSEIREP+KKSRIWLG
Sbjct:    19 RRVKYKPKKKRAKDDD--DEKV--VS--KHPNFRGVRMRQWGKWVSEIREPKKKSRIWLG 72

Query:   103 TFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQXXXXXXXXIVSLP 162
             TF+T EMAARAHDVAALAIKG SA+LNFPELA+ LPRPA++ PKDIQ         V++ 
Sbjct:    73 TFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQAAAAAAAAAVAID 132

Query:   163 KGQELTNPPSPASTVTSHDTQESASSXXXXXXXXXXXXXXXXXXXXGRHQMDELWDSFSW 222
                E T+ PSP+ TVT        SS                      H +D  WDSF +
Sbjct:   133 MDVE-TSSPSPSPTVTE------TSSPAMIALSDDAFSDLPDLLLNVNHNIDGFWDSFPY 185

Query:   223 QQ 224
             ++
Sbjct:   186 EE 187

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

TAIR|locus:2129111 AT4G16750 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 84/140 (60%), Positives = 98/140 (70%)

Query:    49 EKTKTASDNDHHESKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPE 108
             EKT  +S   + +   + VS  K P +RGVRMRQWGKWVSEIREPRKKSRIWLGTF+TPE
Sbjct:    19 EKTGKSSKTKNEQ---KGVS--KQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPE 73

Query:   109 MAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQXXXXXXXXIVSLPKGQELT 168
             MAARAHDVAALAIKG SA+LNFPELA+ LPRPA++ PKDIQ        +       +  
Sbjct:    74 MAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAV-------DWK 126

Query:   169 NPPSPASTVTSHDTQESASS 188
              P SP+STVTS    + A S
Sbjct:   127 APESPSSTVTSSPVADDAFS 146

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2195985 AT1G77200 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 79/143 (55%), Positives = 92/143 (64%)

Query:    46 IQEEKTKTASDNDHHESKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFA 105
             + EE+       D H + T+K      P YRGVRMR WGKWVSEIREPRKKSRIWLGTF+
Sbjct:    15 VPEEEDHHHHQQDSHRTNTKK-RVRSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFS 73

Query:   106 TPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQXXXXXXXXIVSLPKGQ 165
             TPEMAARAHD AAL IKG SA LNFPELA  LPRPA+SSP+D+Q        +   P   
Sbjct:    74 TPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSS 133

Query:   166 ELTNPPSPASTVTSHDTQESASS 188
              L     P + +   +TQ S+SS
Sbjct:   134 SLV-VSDPTTVIAPAETQLSSSS 155

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 80/148 (54%), Positives = 92/148 (62%)

Query:     3 VSLNTENEAQATTSSSHPCSAREXXXXXXXXXXXXXXXXXRIIIQEEKTKTASDNDHHES 62
             ++ +    +  TTSSS   S                      ++  E      D +    
Sbjct:    30 ITASASLSSSPTTSSSSSSSTNSNFIEEDNSKRKASRRSLSSLVSVEDD---DDQNGGGG 86

Query:    63 KTRKVSDL-KHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAI 121
             K RK +   KHPTYRGVRMR WGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAALAI
Sbjct:    87 KRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAI 146

Query:   122 KGHSAYLNFPELAHELPRPATSSPKDIQ 149
             KG +AYLNFP+LA ELPRP T+SPKDIQ
Sbjct:   147 KGTTAYLNFPKLAGELPRPVTNSPKDIQ 174

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 75/141 (53%), Positives = 93/141 (65%)

Query:    43 RIIIQEEKTKTASDN---DHHESKTRKVSDL-KHPTYRGVRMRQWGKWVSEIREPRKKSR 98
             ++++   ++ + SD    +  E KT++  D  KHP YRGVRMR WGKWVSEIREPRKKSR
Sbjct:    15 QLLVPNSESDSVSDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSR 74

Query:    99 IWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQXXXXXXXXI 158
             IWLGTF TPEMAARAHDVAAL+IKG +A LNFPELA   PRP + SP+DIQ        +
Sbjct:    75 IWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHM 134

Query:   159 VSLPKGQELTNPPSPASTVTS 179
                      T+  S  S+ +S
Sbjct:   135 EPTTSFSSSTSSSSSLSSTSS 155

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 77/145 (53%), Positives = 92/145 (63%)

Query:    46 IQEEKTKTASDNDHHE----SKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWL 101
             + EE+    ++N        S     S ++HP YRGVRMR WGKWVSEIR+PRKK+RIWL
Sbjct:    28 LSEEEAPPRNNNTRKRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWL 87

Query:   102 GTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQXXXXXXXXIVSL 161
             GTF T +MAARAHDVAAL IKG SA LNFPELA   PRPA+SSP DIQ        +V  
Sbjct:    88 GTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVE 147

Query:   162 PKGQELTNPP-SPASTVTSHDTQES 185
              K  E    P +P S+ +S+   ES
Sbjct:   148 EKLLEKDEAPEAPPSSESSYVAAES 172

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 79/148 (53%), Positives = 97/148 (65%)

Query:    45 IIQEEKTKT----ASDNDHHESKTRKVSDL-KHPTYRGVRMRQWGKWVSEIREPRKKSRI 99
             +I  E TK+    A   ++ E K + V D  KHP YRGVR R WGKWVSEIREPRKKSRI
Sbjct:     1 MIASESTKSWEASAVRQENEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRI 60

Query:   100 WLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQXXXXXXXXIV 159
             WLGTF +PEMAARAHDVAAL+IKG SA LNFP+LA   PRP++ SP+DIQ        + 
Sbjct:    61 WLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHM- 119

Query:   160 SLPKGQELTNPPSPASTVTSHDTQESAS 187
                   E +   S +S++T   +Q S+S
Sbjct:   120 ------ETSQSFSSSSSLTFSSSQSSSS 141

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2103301 AT3G60490 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 75/104 (72%), Positives = 81/104 (77%)

Query:    50 KTKTASDNDHHESKTRK--VSD-LKHPT-YRGVRMRQWGKWVSEIREPRKKSRIWLGTFA 105
             K     DND    K RK  VSD  K+PT YRGVRMR WGKWVSEIREPRKKSRIWLGT+ 
Sbjct:    43 KRSLVQDNDSG-GKRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYP 101

Query:   106 TPEMAARAHDVAALAIKGHSAYLNFPELAHELPRPATSSPKDIQ 149
             T EMAARAHDVAALAIKG+S +LNFPEL+  LPRP + SPKDIQ
Sbjct:   102 TAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQ 145

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2134128 AT4G32800 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 69/131 (52%), Positives = 85/131 (64%)

Query:    58 DHHESKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVA 117
             D    K +K ++ K P YRGVRMR WGKWVSEIREPRKKSRIWLGTF T EMA RAHDVA
Sbjct:     3 DSSSDKEKKENN-KQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVA 61

Query:   118 ALAIKGHSAYLNFPELAHELPRPATSSPKDIQXXXXXXXXIVSLPKGQELTNPPSPASTV 177
             A++IKG SA LNFPEL+  LPRP + SP+D++        ++         +    + T 
Sbjct:    62 AMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAA-LMDFDT-TAFRSDTETSETT 119

Query:   178 TSHDTQESASS 188
             TS+   ES+ S
Sbjct:   120 TSNKMSESSES 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2043495 ESE2 "ethylene and salt inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 64/88 (72%), Positives = 69/88 (78%)

Query:    62 SKTRKVSDLKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAI 121
             SK +K    +   YRG RMR WGKWVSEIREPRKKSRIWLGTF T EMAARAHDVAAL+I
Sbjct:    13 SKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSI 72

Query:   122 KGHSAYLNFPELAHELPRPATSSPKDIQ 149
             KG SA LNFPELA  LPRP + S +DIQ
Sbjct:    73 KGSSAILNFPELADFLPRPVSLSQQDIQ 100

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__1597__AT2G35700.1 annotation not avaliable (189 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	5e-34
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-32
pfam00847	53	pfam00847, AP2, AP2 domain	6e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  117 bits (296), Expect = 5e-34
 Identities = 38/59 (64%), Positives = 43/59 (72%)

Query: 75  YRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL 133
           YRGVR R WGKWV+EIR+P K  R+WLGTF T E AARA+D AA   +G SA LNFP  
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  113 bits (284), Expect = 3e-32
 Identities = 39/59 (66%), Positives = 45/59 (76%)

Query: 75  YRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL 133
           YRGVR R WGKWV+EIR+P    RIWLGTF T E AARA+D AAL ++G SA LNFP+ 
Sbjct: 3   YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 64.6 bits (158), Expect = 6e-14
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 4/54 (7%)

Query: 73  PTYRGVRMR-QWGKWVSEIREP--RKKSRIWLGTFATPEMAARAHDVAALAIKG 123
             Y+GVR   +WG+WV+EIR+P  +KK R  LGTF T E AARA   A L ++G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.83
PHA00280	121	putative NHN endonuclease	99.47
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.11

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=2.8e-21  Score=141.63  Aligned_cols=61  Identities=64%  Similarity=1.093  Sum_probs=57.9

Q ss_pred             CceeEEEeCCCCcEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 023243           73 PTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL  133 (285)
Q Consensus        73 S~YRGVr~r~~GkW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl~l~G~~A~lNFp~s  133 (285)
                      |+||||+++++|||+|+|+.+..++++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            5899999998899999999966699999999999999999999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.83  E-value=1.9e-20  Score=138.88  Aligned_cols=63  Identities=60%  Similarity=1.043  Sum_probs=59.5

Q ss_pred             ceeEEEeCCCCcEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 023243           74 TYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPELAHE  136 (285)
Q Consensus        74 ~YRGVr~r~~GkW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl~l~G~~A~lNFp~s~~~  136 (285)
                      +||||+++++|||+|+|+.|.+++++|||+|+|+||||+|||.|+++++|..+.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999898899999999999999999999999999999999999999999999999987553

>PHA00280 putative NHN endonuclease

Probab=99.47  E-value=6.5e-14  Score=117.20  Aligned_cols=73  Identities=11%  Similarity=0.084  Sum_probs=63.5

Q ss_pred             ccCCCCccccCccCCCCCCCCCceeEEEeC-CCCcEEEEEecCCCCeEeeccCCCCHHHHHHHHHHHHHHhcCCCCC
Q 023243           52 KTASDNDHHESKTRKVSDLKHPTYRGVRMR-QWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKGHSAY  127 (285)
Q Consensus        52 ~~~s~~~~kr~~~~~~~~~~sS~YRGVr~r-~~GkW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl~l~G~~A~  127 (285)
                      ++...+..++..+++.+++++|+||||.++ ..|||+|+|+.  +||+++||.|+++|+|+.||+ ++.+|+|.+|.
T Consensus        46 NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         46 NLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            455566677777777778899999999987 56999999999  999999999999999999997 77889999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.11  E-value=1.3e-10  Score=83.03  Aligned_cols=52  Identities=31%  Similarity=0.505  Sum_probs=45.5

Q ss_pred             CceeEEEeC-CCCcEEEEEecCCC---CeEeeccCCCCHHHHHHHHHHHHHHhcCC
Q 023243           73 PTYRGVRMR-QWGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALAIKGH  124 (285)
Q Consensus        73 S~YRGVr~r-~~GkW~AeIr~p~~---~kriwLGtF~T~EeAArAYD~AAl~l~G~  124 (285)
                      |+|+||+++ ..++|+|+|+++..   +++++||.|+++|+|++||+.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            589999877 57999999999522   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-13
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-13

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 75  YRGVRMRQWGKWVSEIREPRKK-SRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFP 131
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G  A LNFP
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 75  YRGVRMRQWGKWVSEIREPRKK-SRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFP 131
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G  A LNFP
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
1gcc_A	63	Ethylene responsive element binding factor 1; tran	4e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  107 bits (269), Expect = 4e-30
 Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 75  YRGVRMRQWGKWVSEIREPRKK-SRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPE 132
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G  A LNFP 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 9e-05
 Identities = 29/296 (9%), Positives = 86/296 (29%), Gaps = 59/296 (19%)

Query: 18  SHPCSARESTSSSSSSPTKTVKSFKRIIIQEEKTKTA-------SDNDH-----HESK-- 63
               ++R   SS+      ++++  R +++ +  +          +           K  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 64  --TR--KVSD-LKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAA 118
             TR  +V+D L   T   + +      ++   E +     +L      ++         
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDC-RPQDLPREVLTTNP 327

Query: 119 LAIKGHSAYL--------NFPELAHE-LPRPATSS-----PKDIQAAAAKAAAIVSLPKG 164
             +   +  +        N+  +  + L     SS     P + +       ++   P  
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSV--FPPS 384

Query: 165 QELTNPPS---------PASTVTSHDTQESASSPLLNNDDDDAFFDLPDLLLDGRHQMDE 215
               + P+            +       +     L+     ++   +P + L+ + +++ 
Sbjct: 385 ---AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 216 LWDSFSWQQLTEPVSEPVGFGFCNSCVL-----YTCKEMLPYHSSGCDDDSMTILF 266
            +     + + +  + P  F   +  +      Y     + +H    +      LF
Sbjct: 442 EYALH--RSIVDHYNIPKTF-DSDDLIPPYLDQYFY-SHIGHHLKNIEHPERMTLF 493

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	88.41

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=7.1e-26  Score=168.00  Aligned_cols=60  Identities=57%  Similarity=0.959  Sum_probs=57.4

Q ss_pred             ceeEEEeCCCCcEEEEEecCCC-CeEeeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 023243           74 TYRGVRMRQWGKWVSEIREPRK-KSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL  133 (285)
Q Consensus        74 ~YRGVr~r~~GkW~AeIr~p~~-~kriwLGtF~T~EeAArAYD~AAl~l~G~~A~lNFp~s  133 (285)
                      +||||++|+||||+|+|++|.+ +++||||||+|+||||+|||.||++++|.++.||||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999999974 79999999999999999999999999999999999986

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=88.41  E-value=0.3  Score=37.33  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=21.7

Q ss_pred             CCCCceeEEEeC-CCCcEEEEEecCCCCeE
Q 023243           70 LKHPTYRGVRMR-QWGKWVSEIREPRKKSR   98 (285)
Q Consensus        70 ~~sS~YRGVr~r-~~GkW~AeIr~p~~~kr   98 (285)
                      ..+|+|+||.|. +.+.|.|+-.+  +++|
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r   30 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR   30 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence            467899999888 66999999998  4544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-31

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  109 bits (275), Expect = 1e-31
 Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 75  YRGVRMRQWGKWVSEIREPRKK-SRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPE 132
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G  A LNFP 
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.2e-25  Score=165.59  Aligned_cols=60  Identities=55%  Similarity=0.946  Sum_probs=56.1

Q ss_pred             ceeEEEeCCCCcEEEEEecCC-CCeEeeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 023243           74 TYRGVRMRQWGKWVSEIREPR-KKSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL  133 (285)
Q Consensus        74 ~YRGVr~r~~GkW~AeIr~p~-~~kriwLGtF~T~EeAArAYD~AAl~l~G~~A~lNFp~s  133 (285)
                      +||||++|++|||+|+|++|. ++++||||+|+|+||||+|||+||++++|+++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999998999999999974 568999999999999999999999999999999999964