Citrus Sinensis ID: 023263

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSRLAKHTNILDFSSFVSR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEcccEEEEEEcccccccHHHHEEEEcccccccccccEEcccccEEEcccccccEcccccccccccccccccccccccccccccccccccHHHHcccHccHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHccccHHEEcccEEEccccccc
Coil and Loop (DISEMBL)
msacsstfrlpnlpnispqnhnivmPTTVFLSLrhstatnpalcklqcvgnnfdstpktieipgkiteesadceprihssggdggagdspggggggggdsgggggdgegndgeekefgpilKFEEVMKEIELkgvglpddMMEAAKTVGIRKMFLLRYLDLqgsvwplgFLMRYCFMLRdrmladpsflfkvGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGmlapyarigqpsassglfGRIQNacgslpsrlakhtnildfssfvsr
Flexible Loop (DISEMBL)
msacsstfrlpnlpnispqnhNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELkgvglpddmMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPsrlakhtnildfssfvsr
Low Complexity Region (SEG)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHssggdggagdspggggggggdsgggggdgegndgEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSRLAKHTNILDFSSFVSR
Disordered region (IsUnstruct)
********************HNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDS***************************************************************PILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSRLAKHTNILDF******
Disordered Region (DISOPRED)
******T**LPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKT************************************************************ILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYAR***********GRIQNACGSLPSRLAKHTNILDFSSFV**
Disordered Region (DISEMBL)
********RLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSRLAKHTNILDFSSFVSR
Disordered Region (DISPRO)
******TFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHS**GDGGA****************************KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSRLAKHTNILDFSS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSRLAKHTNILDFSSFVSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
15242979	433	protein reticulata-related 1 [Arabidopsi	0.561	0.369	0.795	6e-70
297812405	434	hypothetical protein ARALYDRAFT_326573 [	0.561	0.368	0.795	1e-69
255573012	419	conserved hypothetical protein [Ricinus	0.547	0.372	0.769	3e-68
225440504	443	PREDICTED: uncharacterized protein LOC10	0.547	0.352	0.769	4e-66
356523205	443	PREDICTED: uncharacterized protein LOC10	0.547	0.352	0.756	8e-66
356566573	443	PREDICTED: uncharacterized protein LOC10	0.547	0.352	0.75	2e-65
359479472	409	PREDICTED: uncharacterized protein LOC10	0.550	0.383	0.764	8e-65
224103009	278	predicted protein [Populus trichocarpa]	0.505	0.517	0.819	2e-64
449440303	439	PREDICTED: uncharacterized protein LOC10	0.547	0.355	0.730	1e-63
356565715	386	PREDICTED: uncharacterized protein LOC10	0.547	0.404	0.737	1e-63

>gi|15242979|ref|NP_197671.1| protein reticulata-related 1 [Arabidopsis thaliana] gi|13605899|gb|AAK32935.1|AF367348_1 AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|9758754|dbj|BAB09278.1| unnamed protein product [Arabidopsis thaliana] gi|19548025|gb|AAL87376.1| AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|332005693|gb|AED93076.1| protein reticulata-related 1 [Arabidopsis thaliana]

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 128/161 (79%), Positives = 144/161 (89%), Gaps = 1/161 (0%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPL
Sbjct: 137 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPL 196

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLV 228
           GFLMR C MLR+RMLADPSFLFKVGTE+ IDSCCAT AE QKRG+DFWSEFELY ADLLV
Sbjct: 197 GFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLV 256

Query: 229 GLVVDIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPS 268
           GLVVD+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPS
Sbjct: 257 GLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPS 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812405|ref|XP_002874086.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata] gi|297319923|gb|EFH50345.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/161 (79%), Positives = 144/161 (89%), Gaps = 1/161 (0%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VG+RK+FLLRYLDLQGSVWPL
Sbjct: 138 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGLRKLFLLRYLDLQGSVWPL 197

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLV 228
           GFLMR C MLR+RMLADPSFLFKVGTEI IDSCCAT AE QKRG+DFWSEFELY ADLLV
Sbjct: 198 GFLMRSCAMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLV 257

Query: 229 GLVVDIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPS 268
           GLVVD+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPS
Sbjct: 258 GLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPS 298

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573012|ref|XP_002527436.1| conserved hypothetical protein [Ricinus communis] gi|223533171|gb|EEF34928.1| conserved hypothetical protein [Ricinus communis]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/156 (76%), Positives = 137/156 (87%)

Query: 115 KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY 174
           KEFGPI+++E+++KE E +GV LP DM+EAAKT GIR++F+LRYLDLQGSVWPLGFLM+Y
Sbjct: 102 KEFGPIMRYEQIIKEAETRGVQLPHDMIEAAKTTGIRQLFVLRYLDLQGSVWPLGFLMKY 161

Query: 175 CFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDI 234
           C MLR+RMLADPSFLFKVGTEIVIDSCCAT AE  KRGKDFWSEFELY ADLLVG+VVDI
Sbjct: 162 CTMLRNRMLADPSFLFKVGTEIVIDSCCATFAEVHKRGKDFWSEFELYAADLLVGIVVDI 221

Query: 235 ALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSRL 270
           ALV MLAPYARIG PS  SGL G +Q AC +LPS +
Sbjct: 222 ALVAMLAPYARIGWPSVKSGLLGNLQQACAALPSSV 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440504|ref|XP_002272506.1| PREDICTED: uncharacterized protein LOC100264910 [Vitis vinifera]

 Score =  257 bits (657), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 120/156 (76%), Positives = 136/156 (87%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPIL FEEVM+E + +G  LP DM+ AAK+VGIRK+ LLRYLDLQGSVWPLGF M
Sbjct: 152 EEEEFGPILSFEEVMREAQARGASLPSDMLTAAKSVGIRKILLLRYLDLQGSVWPLGFAM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           + C MLR+RMLADPSFLFK+GTEIVIDSCCAT AE QKRGKDFW+EFELY ADLLVG+VV
Sbjct: 212 KSCSMLRNRMLADPSFLFKIGTEIVIDSCCATFAEVQKRGKDFWAEFELYTADLLVGVVV 271

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPS 268
           +IALVGMLAPYARIGQPS S G  G +Q+A G+LPS
Sbjct: 272 NIALVGMLAPYARIGQPSISKGFLGHLQHAYGALPS 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523205|ref|XP_003530232.1| PREDICTED: uncharacterized protein LOC100780872 [Glycine max]

 Score =  256 bits (654), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 118/156 (75%), Positives = 138/156 (88%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           + C MLR+RMLADP+FLFK+G+EIVID+CCAT AE QKRGKDFW+EFELYLADLLVGLVV
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDFWAEFELYLADLLVGLVV 271

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPS 268
           ++ALVGMLAPYARIG+PS SSG  GR+Q A  +LPS
Sbjct: 272 NVALVGMLAPYARIGKPSISSGFLGRMQKAYAALPS 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566573|ref|XP_003551505.1| PREDICTED: uncharacterized protein LOC100783806 [Glycine max]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/156 (75%), Positives = 138/156 (88%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           + C MLR+RMLADP+FLFK+G+EIVID+CCAT AE QKRGKDFW+EFELYLADLLVGLVV
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDFWAEFELYLADLLVGLVV 271

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPS 268
           ++ALVGMLAPYAR+G+PS SSG  GR+Q A  +LPS
Sbjct: 272 NVALVGMLAPYARLGKPSISSGFLGRMQKAYAALPS 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479472|ref|XP_003632277.1| PREDICTED: uncharacterized protein LOC100854755 [Vitis vinifera]

 Score =  253 bits (646), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 120/157 (76%), Positives = 134/157 (85%)

Query: 114 EKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMR 173
           E+EFG ILKFEEVM+E E +G  LP DM EAAKT GIR++ L RYLDLQGSVWPLGF M+
Sbjct: 119 EEEFGRILKFEEVMREAENRGASLPSDMWEAAKTTGIREVILFRYLDLQGSVWPLGFGMK 178

Query: 174 YCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVD 233
           +  MLR+RMLADPSFLFKVGTE+VIDSCCAT AE QKRGKDFW+EFELY ADLLVG+VVD
Sbjct: 179 HFSMLRNRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGKDFWAEFELYAADLLVGVVVD 238

Query: 234 IALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSRL 270
           IALVGMLAPY R GQPS S GL GRIQ+AC +LPS +
Sbjct: 239 IALVGMLAPYTRFGQPSISRGLVGRIQHACAALPSSV 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103009|ref|XP_002312888.1| predicted protein [Populus trichocarpa] gi|222849296|gb|EEE86843.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/144 (81%), Positives = 129/144 (89%)

Query: 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADP 186
           MKEIE +GV LP DMMEAAK++GIRKMFLLRYLDLQGS WPLGFLM+YC MLR+RMLADP
Sbjct: 1   MKEIEARGVELPADMMEAAKSIGIRKMFLLRYLDLQGSAWPLGFLMKYCTMLRNRMLADP 60

Query: 187 SFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARI 246
           SFLFKVGTEIVIDSCCAT AE QKRGKDFWSEFELY ADLLVG+VVD ALVG+LAPYARI
Sbjct: 61  SFLFKVGTEIVIDSCCATFAEVQKRGKDFWSEFELYAADLLVGIVVDFALVGLLAPYARI 120

Query: 247 GQPSASSGLFGRIQNACGSLPSRL 270
           G+P+ S GLFG IQ AC +LPS +
Sbjct: 121 GKPAVSGGLFGSIQQACAALPSSV 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440303|ref|XP_004137924.1| PREDICTED: uncharacterized protein LOC101202748 [Cucumis sativus] gi|449483677|ref|XP_004156657.1| PREDICTED: uncharacterized protein LOC101226426 [Cucumis sativus]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 134/156 (85%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPI+KFEEVMKE+E +GV LP DM+EAAK+ GIRK+ LLRYL++QG  WPLGFLM
Sbjct: 148 EEEEFGPIMKFEEVMKELESRGVTLPSDMLEAAKSEGIRKLLLLRYLEMQGLGWPLGFLM 207

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           R C M+R+R+LADPSF FKVG E+VIDSCCAT AE QKRGKDFW+EFELYLAD+LVG+ V
Sbjct: 208 RSCAMIRNRVLADPSFFFKVGVELVIDSCCATFAEVQKRGKDFWTEFELYLADILVGVAV 267

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPS 268
           + ALV +LAPYAR GQPS S G  GRIQ+AC +LPS
Sbjct: 268 NFALVALLAPYARFGQPSVSKGFLGRIQHACEALPS 303

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565715|ref|XP_003551083.1| PREDICTED: uncharacterized protein LOC100799853 [Glycine max]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/156 (73%), Positives = 138/156 (88%)

Query: 115 KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY 174
           +EFGP+LKFE VM+E + +GV LP DM EAA+  GIR+MFLLRY++LQGS WP+ FL+++
Sbjct: 97  EEFGPLLKFEAVMRESKARGVKLPPDMEEAARITGIREMFLLRYMELQGSSWPVSFLIQH 156

Query: 175 CFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDI 234
           C MLR+RMLADPSFLFKVGTEIVIDSCCATLAE QKRGK+FW+EFELY ADLLVG+VVDI
Sbjct: 157 CAMLRNRMLADPSFLFKVGTEIVIDSCCATLAEVQKRGKNFWAEFELYAADLLVGVVVDI 216

Query: 235 ALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSRL 270
           ALVG+LAPYARIG+PS S GL G+IQ+AC +LPS +
Sbjct: 217 ALVGLLAPYARIGKPSFSKGLLGQIQHACAALPSSV 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2158155	433	RER1 "AT5G22790" [Arabidopsis	0.547	0.360	0.815	1.2e-65
TAIR|locus:2065649	432	LCD1 "AT2G37860" [Arabidopsis	0.547	0.361	0.743	1.6e-56
TAIR|locus:505006615	386	AT5G12470 "AT5G12470" [Arabido	0.477	0.352	0.287	1.4e-08
TAIR|locus:2078446	745	AT3G56140 "AT3G56140" [Arabido	0.452	0.173	0.259	0.00062
TAIR|locus:2063136	735	AT2G40400 [Arabidopsis thalian	0.435	0.168	0.311	0.00079

TAIR|locus:2158155 RER1 "AT5G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 128/157 (81%), Positives = 143/157 (91%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPLGFLM
Sbjct:   141 EEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLM 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
             R C MLR+RMLADPSFLFKVGTE+ IDSCCAT AE QKRG+DFWSEFELY ADLLVGLVV
Sbjct:   201 RSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVV 260

Query:   233 DIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPS 268
             D+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPS
Sbjct:   261 DVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPS 297

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2065649 LCD1 "AT2G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 116/156 (74%), Positives = 128/156 (82%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G  LP DM+EAAK  GIRK+ LLRYLDLQ S   LGF +
Sbjct:   141 EEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAI 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
             R   MLR+RMLADPSFLFK+G EIVIDSCCAT+AE QKRGKDFW+EFELY+ADLLVG VV
Sbjct:   201 RSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVV 260

Query:   233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPS 268
             +IALVGMLAPY R GQPSAS G  GR+  A  +LPS
Sbjct:   261 NIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPS 296

GO:0003674 "molecular_function" evidence=ND

GO:0048366 "leaf development" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:505006615 AT5G12470 "AT5G12470" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 40/139 (28%), Positives = 76/139 (54%)

Query:   126 VMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLAD 185
             ++KE  ++   LP D+  A +   I    + R+L+LQ S   + +LM++    R+R+LAD
Sbjct:   108 LLKESGIELESLPKDLAAAIEAGRIPGSVITRFLELQKSA-VMRWLMQFGGF-RERLLAD 165

Query:   186 PSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYAR 245
               F+ K+  E  +     T AE+++R ++F++E E+  AD+ + ++ D  LV + AP   
Sbjct:   166 DLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVS 225

Query:   246 IGQPSA-SSGLFGRIQNAC 263
             +  P A ++G   +  + C
Sbjct:   226 LRPPLALTAGGISKFFHNC 244

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2078446 AT3G56140 "AT3G56140" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00062, P = 0.00062
 Identities = 35/135 (25%), Positives = 60/135 (44%)

Query:   137 LPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFM-LRDRMLADPSFLFKVGTE 195
             LP D+        +    L    DL+   +PL   +   F   R+R+LADP FL ++  E
Sbjct:   437 LPPDIQNGLDLGLVSPEVLQNLFDLEQ--YPLISELTQRFQGFRERLLADPKFLNRLAIE 494

Query:   196 IVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAP---YARIGQPSAS 252
               I      +A+++KR ++F+ E +  + D + G VVD   V + AP   +      +  
Sbjct:   495 EAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADETTG 554

Query:   253 SGLFGRIQNACGSLP 267
                   ++   GS+P
Sbjct:   555 PDSIDALRGLLGSIP 569

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR|locus:2063136 AT2G40400 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 0.00079, P = 0.00079
 Identities = 43/138 (31%), Positives = 65/138 (47%)

Query:   137 LPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFM-LRDRMLADPSFLFKVGTE 195
             LP D+ +      +    L  + DL+   +PL   +   F   R+R+LADP FL ++  E
Sbjct:   428 LPQDIQKGLDLGLVSPEILQNFFDLEQ--YPLISELTQRFQGFRERLLADPKFLNRLAIE 485

Query:   196 IVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAP------YA--RIG 247
               I      +A+++KR ++F+ E +  + D +   VVD   V + AP      YA   IG
Sbjct:   486 EAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTVWLPAPTLSFISYADETIG 545

Query:   248 QPS--ASSGLFGRI-QNA 262
               S  A  GL G I  NA
Sbjct:   546 PNSIDALRGLLGSIPDNA 563


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      285       251   0.00081  114 3  11 22  0.40    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  188 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.60u 0.14s 18.74t   Elapsed:  00:00:00
  Total cpu time:  18.60u 0.14s 18.74t   Elapsed:  00:00:00
  Start:  Thu May  9 16:50:02 2013   End:  Thu May  9 16:50:02 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	RER1	RER1 (RETICULATA-RELATED 1); RETICULATA-RELATED 1 (RER1); FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 6 growth stages; BEST Arabidopsis thaliana protein match is- LCD1 (LOWER CELL DENSITY 1) (TAIR-AT2G37860.3); Has 3747 Blast hits to 1646 proteins in 237 species- Archae - 10; Bacteria - 594; Metazoa - 1288; Fungi - 337; Plants - 546; Viruses - 166; Other Eukaryotes - 806 (source- NCBI BLink). (433 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT2G41780	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (127 aa)							•		0.921
	AT2G41770	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (771 aa)							•		0.921
	AT2G37880	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (247 aa)							•		0.921
	AT2G41790	peptidase M16 family protein / insulinase family protein; peptidase M16 family protein / insuli [...] (970 aa)							•		0.679
	AT2G37840	protein kinase family protein; protein kinase family protein; FUNCTIONS IN- protein serine/thre [...] (733 aa)							•		0.679
	AT2G37790	aldo/keto reductase family protein; aldo/keto reductase family protein; FUNCTIONS IN- oxidoredu [...] (314 aa)							•		0.539

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
pfam11891	179	pfam11891, DUF3411, Domain of unknown function (DU	1e-34
PRK05325	401	PRK05325, PRK05325, hypothetical protein; Provisio	8e-06
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	1e-05
PHA00370	297	PHA00370, III, attachment protein	6e-04
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	7e-04
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	0.002
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.003
COG2718	423	COG2718, COG2718, Uncharacterized conserved protei	0.003
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.004
PLN03184	673	PLN03184, PLN03184, chloroplast Hsp70; Provisional	0.004

>gnl|CDD|221294 pfam11891, DUF3411, Domain of unknown function (DUF3411)

 Score =  123 bits (310), Expect = 1e-34
 Identities = 49/89 (55%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGM 239
           +R+LADPSFLFK+  E VID C AT+AE +KRG++FW+EF+L  ADLLVG VV+ ALV +
Sbjct: 1   ERLLADPSFLFKLAMEEVIDICAATVAEVEKRGENFWAEFDLVAADLLVGSVVNFALVYL 60

Query: 240 LAPYARIGQPSASSGLFGRIQNACGSLPS 268
           LAP    G  +A     G ++   GSLPS
Sbjct: 61  LAPTRSFGSTAAEM--AGGLRKFLGSLPS 87

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. Length = 179

>gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 58  KTIEIPGKITEE------SADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGND 111
           + + IP +  +E             +    G+   GD  G   GGGG  G GGGDGEG D
Sbjct: 37  EVVSIPIRDIDEPKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEGED 96

Query: 112 GEE-----KEFGPILKFEE 125
             E     +E   +L FE+
Sbjct: 97  YFEFEISLEELLDLL-FED 114

Length = 401

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 2   SACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIE 61
           S   S     +L +  PQ  +         S + +T +  A      +  +  ++  +  
Sbjct: 5   STMVSAAASTSLSSSRPQLSSFSS-----RSPQSATRSPRA----SSIKCSASASASSSA 55

Query: 62  IPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGE 113
                +  +         S      G   GGGG GG   GGGGG G G    
Sbjct: 56  TSSSASLVAN--GAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWR 105

Length = 796

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 80  SGGDGGAGDSPGG-GGGGGGDSGGGGGDGEGNDGEEKEFG 118
           +GGD G G++ GG GGG  G SGGGG DG G++G      
Sbjct: 96  TGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKS 135

Length = 297

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 16/33 (48%), Positives = 16/33 (48%)

Query: 75  PRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDG 107
                  G  G G S GG  GGGG SGGGG  G
Sbjct: 237 SSGSGGSGGSGGGSSGGGFSGGGGSSGGGGASG 269

Length = 271

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 79  SSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
            SGG GG GD  G GGGGGG  GG GG+     G
Sbjct: 113 GSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGG 146

Length = 182

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 17/32 (53%), Positives = 17/32 (53%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
           G  GG G   GGGGGGG   GG GG   G  G
Sbjct: 5   GFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRG 36

Length = 293

>gnl|CDD|225339 COG2718, COG2718, Uncharacterized conserved protein [Function unknown]

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 76  RIHSSGGDGGAGD---SPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIEL 132
            +     +   GD    P GGGGGG   G   GDGEG D    EF   +  EEV+ ++  
Sbjct: 74  HVGPGNDEFAVGDRIERPQGGGGGGSGKGQAAGDGEGED----EFVFQISREEVL-DLLF 128

Query: 133 KGVGLPD 139
           + + LP+
Sbjct: 129 EDLELPN 135

Length = 423

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 15/29 (51%), Positives = 15/29 (51%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEG 109
           GG GG      G G GGG  G GGG G G
Sbjct: 25  GGRGGGRGGGRGRGRGGGGGGRGGGGGGG 53

Length = 293

>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 77  IHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGE 113
           +++  G GGAG +PGG  G    S  GG   +  D +
Sbjct: 634 LYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDAD 670

Length = 673

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
PF11891	180	DUF3411: Domain of unknown function (DUF3411); Int	100.0
PLN03138	796	Protein TOC75; Provisional	94.85
PF04285	421	DUF444: Protein of unknown function (DUF444); Inte	91.68
TIGR02877	371	spore_yhbH sporulation protein YhbH. This protein	90.53
PRK05325	401	hypothetical protein; Provisional	90.45
COG4907	595	Predicted membrane protein [Function unknown]	86.61

>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=4.3e-39  Score=282.95  Aligned_cols=98  Identities=46%  Similarity=0.762  Sum_probs=94.1

Q ss_pred             HhhhcCCcchhhHhHHhhhhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCc-CCchhhh
Q 023263          180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSA-SSGLFGR  258 (285)
Q Consensus       180 ~RlLADP~FLfKl~~E~~i~v~~~~~aE~~kRge~F~~ElDfV~advvvg~v~nfaLVwLLAPt~s~g~~~~-s~g~~~~  258 (285)
                      +||||||+|||||++||+||++|+++|||++|||+||+|||||++|+++++|+||+||||||||++++++++ +++  +.
T Consensus         1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~~--~~   78 (180)
T PF11891_consen    1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSPG--GG   78 (180)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCcccccccc--hH
Confidence            699999999999999999999999999999999999999999999999999999999999999999999987 444  78


Q ss_pred             HHhhhcCCCccccccCCCCCc
Q 023263          259 IQNACGSLPSRLAKHTNILDF  279 (285)
Q Consensus       259 l~~~~~~LP~nvFe~~~pl~~  279 (285)
                      ||+.+++||+||||++.|++.
T Consensus        79 ~~~~~~~~P~n~Fq~~~~g~~   99 (180)
T PF11891_consen   79 LQKFLGSLPNNAFQKGYPGRS   99 (180)
T ss_pred             HHHHHHhChHHHhccCCCCCc
Confidence            999999999999999999995

This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.

>PLN03138 Protein TOC75; Provisional

Probab=94.85  E-value=0.074  Score=56.92  Aligned_cols=21  Identities=24%  Similarity=0.176  Sum_probs=16.1

Q ss_pred             CcccccccCCCCCCCCCCCCc
Q 023263            2 SACSSTFRLPNLPNISPQNHN   22 (285)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~   22 (285)
                      ++|.+.++-++++.-.||+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~   25 (796)
T PLN03138          5 STMVSAAASTSLSSSRPQLSS   25 (796)
T ss_pred             cccceeccCCCccCCCccccc
Confidence            578888888888887777754

>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56

Probab=91.68  E-value=0.45  Score=47.76  Aligned_cols=77  Identities=29%  Similarity=0.427  Sum_probs=34.7

Q ss_pred             CCcccccCCcccccccc----cCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccHHHHHHHHH
Q 023263           56 TPKTIEIPGKITEESAD----CEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIE  131 (285)
Q Consensus        56 ~p~T~ei~g~~~~ss~~----~e~~~~~~~g~g~~g~~~~~~ggggg~~ggg~~~g~~~d~~e~e~G~ll~~~eVl~ea~  131 (285)
                      +.+++++.+..++.-..    ....+..|.|++.-|+.-+..++|+| +|+|+|+|.++.+++++|=--++.+|++....
T Consensus        50 ~~V~IP~r~l~Ep~Fr~g~gg~~~~Vg~Gnge~~~GD~I~rp~~g~g-~g~G~g~gag~geGeD~fe~els~eE~~~llf  128 (421)
T PF04285_consen   50 EKVSIPIRGLEEPRFRHGQGGQREHVGPGNGEFKEGDVIGRPPGGGG-GGDGGGQGAGDGEGEDDFEFELSREEFLDLLF  128 (421)
T ss_pred             ceEeecCCCCCCCceeCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCCCCCCCCeEEEEEEHHHHHHHhH
Confidence            45677777777774422    22333333333333444333323322 11122222222222333335578888887764


Q ss_pred             Hh
Q 023263          132 LK  133 (285)
Q Consensus       132 r~  133 (285)
                      .-
T Consensus       129 Ed  130 (421)
T PF04285_consen  129 ED  130 (421)
T ss_pred             HH
Confidence            43

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].

>TIGR02877 spore_yhbH sporulation protein YhbH

Probab=90.53  E-value=0.72  Score=45.78  Aligned_cols=80  Identities=26%  Similarity=0.370  Sum_probs=38.0

Q ss_pred             CCCCcccccCCccccccc---ccCCcccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCccccccccccHHHHHHH
Q 023263           54 DSTPKTIEIPGKITEESA---DCEPRIHSSGGDGGAGDSPGGGGGG-GGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKE  129 (285)
Q Consensus        54 ~s~p~T~ei~g~~~~ss~---~~e~~~~~~~g~g~~g~~~~~~ggg-gg~~ggg~~~g~~~d~~e~e~G~ll~~~eVl~e  129 (285)
                      ..+.++++|.+.++|.=.   +....+..|.|..--|+.-+...+| ||++|.|.|+|+|+|+=+    --++.+|+++.
T Consensus        47 ~~~~V~IPir~l~Ep~F~~g~~~~~~Vg~Gng~~~~GD~i~rp~~~~ggg~g~gag~geGed~fe----~e~s~eE~~~~  122 (371)
T TIGR02877        47 GKKKIKVPIRGLKEYRFRYDWNKQKRVGQGDGNEKVGDVIGRERAGGEGGGGKGAGDQEGEDYYE----TEVTLEELFEL  122 (371)
T ss_pred             CCceEEccCCCCccceEEeCCCCCCeecCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHH
Confidence            345788888888888442   2223333332322224443332222 111112222233333333    44788998888


Q ss_pred             HHHhCCCch
Q 023263          130 IELKGVGLP  138 (285)
Q Consensus       130 a~r~~~sLP  138 (285)
                      ...-+ .||
T Consensus       123 lfEdL-eLP  130 (371)
T TIGR02877       123 LFEDL-ELP  130 (371)
T ss_pred             HHhhc-cCC
Confidence            76543 344

This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.

>PRK05325 hypothetical protein; Provisional

Probab=90.45  E-value=0.82  Score=45.72  Aligned_cols=79  Identities=30%  Similarity=0.384  Sum_probs=36.1

Q ss_pred             CCCcccccCCcccccccccCC----cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccHHHHHHHH
Q 023263           55 STPKTIEIPGKITEESADCEP----RIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEI  130 (285)
Q Consensus        55 s~p~T~ei~g~~~~ss~~~e~----~~~~~~g~g~~g~~~~~~ggggg~~ggg~~~g~~~d~~e~e~G~ll~~~eVl~ea  130 (285)
                      .+.++++|.+.++|.=..-..    .+..|.|+---|+.-+...|+|+|+|.|+++|+|+|+-+    --++.+|++...
T Consensus        36 ~~~v~IPi~~i~Ep~F~~g~~~~~~~Vg~Gn~~~~~GD~i~rp~g~g~G~G~~~~~geGeD~fe----~els~eE~~~~l  111 (401)
T PRK05325         36 GEVVSIPIRDIDEPKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEGEDYFE----FEISLEELLDLL  111 (401)
T ss_pred             CceEEecCCCCccceEEeCCCCCCCccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHH
Confidence            367888888888885533222    222221211124433333222221112222222333322    347888888887


Q ss_pred             HHhCCCch
Q 023263          131 ELKGVGLP  138 (285)
Q Consensus       131 ~r~~~sLP  138 (285)
                      ..-+ .||
T Consensus       112 fEdL-eLP  118 (401)
T PRK05325        112 FEDL-ELP  118 (401)
T ss_pred             Hhhc-CCC
Confidence            6544 344

>COG4907 Predicted membrane protein [Function unknown]

Probab=86.61  E-value=0.55  Score=48.36  Aligned_cols=9  Identities=0%  Similarity=-0.012  Sum_probs=4.1

Q ss_pred             eeecccccC
Q 023263           31 LSLRHSTAT   39 (285)
Q Consensus        31 ~~~~~~~~~   39 (285)
                      .-.||+.-+
T Consensus       547 ~i~h~nysr  555 (595)
T COG4907         547 PIFHNNYSR  555 (595)
T ss_pred             eEEecchhh
Confidence            334555443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00