Citrus Sinensis ID: 023267

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MDDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAVSVS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccccccccEEEEEEEEEcHHHHHHHHHcccccEEEEEEccccccEEEEEcccccEEEEEEEEcccccEEEEEcccccEEEEEEccEEEEEcccccEEEEEEEEEEEccHHHHHHHHccccccccEEEEEEccEEcc
Secondary Structure Prediction (SSPRO)
cccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEccccccccccccccEEcccccccccccEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccEEEEEEccccEEEEEEEccccccEEEEEccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEccccccccccEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
mddrisklpddILICILSRLTIEEAARASILSYRWRYLWRFFtgsldfvdpykIRRLAilsdpyykcednyfIRVKRRNFINLVDPILGLLQTKSLQQLricypvnsdydvdsWVQFAVDKRVQRLeldfseskteghelhtfspyfkttssFSSLVSLrlidvdipEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSgpslklkylelrdlpnlsnleinapnlvsfefsAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAVSVS
Flexible Loop (DISEMBL)
mddrisklpddiLICILSRLTIEEAARASILSYRWRYLWRFFtgsldfvdpYKIRRlailsdpyykcEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDfseskteghelhtfspyfkTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRvsgpslklkyLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAVSVS
Low Complexity Region (SEG)
MDDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAVSVS
Disordered region (IsUnstruct)
*********DDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFS*****GHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA****
Disordered Region (DISOPRED)
MDDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAVSVS
Disordered Region (DISEMBL)
MDDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAVSVS
Disordered Region (DISPRO)
**D*ISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIR*****SDPYYKCED*YFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAVSVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAVSVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q9FX89	385	Putative F-box protein At	yes	no	0.768	0.568	0.273	2e-12
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	yes	no	0.705	0.452	0.282	2e-11
Q9FM94	421	FBD-associated F-box prot	no	no	0.785	0.532	0.264	1e-10
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.621	0.388	0.297	2e-10
Q84W80	481	F-box/LRR-repeat protein	no	no	0.775	0.459	0.269	2e-10
Q9LXR6	457	Putative F-box protein At	no	no	0.757	0.472	0.289	4e-10
Q9FZ70	416	F-box/FBD/LRR-repeat prot	no	no	0.698	0.478	0.316	5e-10
Q9FFU7	472	Putative F-box/LRR-repeat	no	no	0.873	0.527	0.282	6e-10
Q9LXJ7	416	FBD-associated F-box prot	no	no	0.768	0.526	0.264	2e-09
Q9SAG4	486	F-box protein At1g80960 O	no	no	0.726	0.425	0.281	2e-09

>sp|Q9FX89|FB50_ARATH Putative F-box protein At1g49610 OS=Arabidopsis thaliana GN=At1g49610 PE=4 SV=2

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 122/274 (44%), Gaps = 55/274 (20%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
           D IS LPD IL   LS +  + A R S+LS RWR++W   T SLDF D YK+        
Sbjct: 26  DSISSLPDVILQENLSLIPTKFAIRTSVLSKRWRHVWS-ETPSLDFDDCYKLD------- 77

Query: 63  PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQ--QLRICYPVNSDYDVDSWVQFAVD 120
                             ++ +D  L L + + +    L I   +N  Y +D W++FA+ 
Sbjct: 78  ------------------VDFIDKTLALYRARKIMTFDLWITNGINLPY-IDGWIKFAMS 118

Query: 121 KRVQRLELDFS----------------ESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDV 164
           + V+ L L F                 +    G E    +P  + + S+SSL  L L   
Sbjct: 119 RNVENLFLSFDFRLYDVPDYLYINSSVKQLVLGTESSELNP--RCSVSWSSLTKLSLFS- 175

Query: 165 DIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS-GPSLKLKYLELRD-LPNLSNLEINA 222
              +E +  +L  CP++E LTL   ++L+ + ++  PSLK+  LE+   +       I A
Sbjct: 176 ---DESIAKILSGCPIIESLTLHFCDQLMVLDLTKSPSLKI--LEIHGSIWGSGPKHIVA 230

Query: 223 PNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCT 256
           P++ S      +  + F  + SL E  ++  +C+
Sbjct: 231 PHIHSLTLKTSQFFIYFCDISSLTEAKVDICFCS 264

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 116/262 (44%), Gaps = 61/262 (23%)

Query: 2   DDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILS 61
           ++R+S+LPD ++  ILS L+ ++A R SILS RWR LW+     LDF D  ++R  +   
Sbjct: 17  EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQ-LVPVLDF-DSRELRSFS--- 71

Query: 62  DPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRIC-YPVNSDYDVDSWVQFAVD 120
                             F++       L +   +Q+LR+C Y +  +Y + SW+     
Sbjct: 72  -----------------EFVSFAGSFFYLHKDSYIQKLRVCIYDLAGNYYLTSWIDLVTR 114

Query: 121 KRVQRLELDFSESKTEGHELHTFSPYFKTT-------------SSFSSLVSLRLIDVD-- 165
            R+Q   +D S     G  +   S Y   T               F SL  L+++D+D  
Sbjct: 115 HRIQ--HIDISVFTCSGFGVIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFV 172

Query: 166 --IPEEVLHYLLCYCPLLEVLTL-KGAE---KLIRIRVSGPSLKLKYLELR--------- 210
               E  L  ++   P+LE LT+ K +E   K+I++R    S  LK +E+          
Sbjct: 173 NFTNETTLDKIISCSPVLEELTIVKSSEDNVKIIQVR----SQTLKRVEIHRRFDRHNGL 228

Query: 211 --DLPNLSNLEINAPNLVSFEF 230
             D P L  L I A ++ S EF
Sbjct: 229 VIDTPLLQFLSIKAHSIKSIEF 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM94|FBD21_ARATH FBD-associated F-box protein At5g56370 OS=Arabidopsis thaliana GN=At5g56370 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 114/272 (41%), Gaps = 48/272 (17%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTG-SLDFVDPYKIRRLAILS 61
           D IS LPDD L+ ILS L  ++    S+LS RWRYLW+         +D           
Sbjct: 2   DSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWKLVPKLQYSLIDK---------- 51

Query: 62  DPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDK 121
                 +   F+R   R+ +  + P+L  L  K  +Q        S+ D+  WV+ AV+K
Sbjct: 52  ----NADHGTFVRFVDRSLLLSMAPVLESLHLKLGRQC-------SEVDIGFWVRIAVEK 100

Query: 122 RVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIP-------------- 167
            +  L+ D+   KTE   L   S +   T +   L ++ L DV  P              
Sbjct: 101 GLCELDFDYEHYKTEPCRLPQ-SLFTCGTLTVLKLKNVSLKDVQFPVCFKLLKTLHLEYV 159

Query: 168 ----EEVLHYLLCYCPLLEVLTLK----GAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE 219
               +E    LL  CP+LEV  L       + ++   V  PSL+ +++      + + L 
Sbjct: 160 IFLDKETPQKLLSSCPILEVFDLTRDDDDVDNVMSFSVMVPSLQ-RFIYCGG--SGAELV 216

Query: 220 INAPNLVSFEFSAGELIVSFKHVPSLVEMSIE 251
           +N P+L   + S         ++P +VE  +E
Sbjct: 217 MNTPSLKYLKLSGCGYECMIGNLPEIVEAHVE 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 102/239 (42%), Gaps = 62/239 (25%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
           D I+ +PDDIL  ILS +  + A R S+LS RWR++W   T  LD      ++  A+   
Sbjct: 27  DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVW-CETPCLDIT----LKHGAM--- 78

Query: 63  PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDY--DVDSWVQFAVD 120
                          +   +   PI+           ++   +NS+    VDSW++FA+ 
Sbjct: 79  --------------NQTLTSYTAPII--------TSFKLVMDLNSNTVPQVDSWIEFALS 116

Query: 121 KRVQRLEL---DFSESKTEGH---------------ELHTFSPYFKTTSSFSSLVSLRLI 162
           + VQ L +   DF+ SKT                   L  F      T S+ SL +L L 
Sbjct: 117 RNVQNLSVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLR 176

Query: 163 DVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEIN 221
              IP+E +H +L  CP+LE LTL     L R            L+L   PNL  L+IN
Sbjct: 177 FCQIPDESIHNILSGCPILESLTLDTCRLLER------------LDLSKSPNLRRLDIN 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 117/275 (42%), Gaps = 54/275 (19%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
           D IS+LPDDIL  ILS L    A + S+LS RWR++W   T SL F   ++ R       
Sbjct: 37  DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWS-DTWSLSF---HRDR------- 85

Query: 63  PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPV--------NSDYDVDSW 114
           P   C                ++ IL   +   +   RIC           ++  D+DSW
Sbjct: 86  PDAPC----------------INRILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSW 129

Query: 115 VQFAVDKRVQRLELDFSESKTE------------------GHELHTFSPYFKTTSSFSSL 156
           + FA+ + V+ L L   E K +                  G +    S   K + S++SL
Sbjct: 130 INFAMSRNVENLSLYLDEDKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSL 189

Query: 157 VSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLS 216
            +L L   +I +E +  +L  CP+LE L L   +KL  + +S  S +L  LE+     + 
Sbjct: 190 KNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSK-SPRLITLEITRRCRME 248

Query: 217 NLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIE 251
             ++ AP++        E   +   V SL +  ++
Sbjct: 249 PTQLVAPHIRCLRLINSEKPCALVDVSSLSQAELD 283

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 106/245 (43%), Gaps = 29/245 (11%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
           D  SKLPD+++  ILS L  +EAA  S+L+ +WRYL+ F   SLDF D          SD
Sbjct: 7   DLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVP-SLDFND----------SD 55

Query: 63  PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYD-VDSWVQFAVDK 121
             +  E         R+F++ VD +L L     +++  +      D D VD W+   + +
Sbjct: 56  FLHPQEGKREKDGILRSFMDFVDRVLALQGASPIKKFSLNVKTGVDPDRVDRWICNVLQR 115

Query: 122 RVQRLEL--DFSESKTEGHELHTFSPYFKTTSSFS-------------SLVSLRLIDVDI 166
            V  L L  DF E  +  +E+       +  + +               L +L L  V+ 
Sbjct: 116 GVSHLALFMDFEEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPMLKTLVLESVEF 175

Query: 167 PEEVLHYLLCYCPLLEVLTLKGAE-KLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNL 225
                  LL  CP+LE L L   E K   + +S  SLK   +   D   L  L  + PNL
Sbjct: 176 GRGQFQTLLPACPVLEELMLLNMEWKDRNVILSSSSLKNLKITSED-GCLGTLSFDTPNL 234

Query: 226 VSFEF 230
           V  ++
Sbjct: 235 VFLDY 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 112/253 (44%), Gaps = 54/253 (21%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
           D IS LP  I+  IL+RL+I +A R S+LS +WRY W   T   D V   K      +S 
Sbjct: 6   DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLT---DLVFDEK-----CVSP 57

Query: 63  PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRI------CYPVNSDYDVDSWVQ 116
              +C       V   N +  +  +L LL    + + ++      C P     D+D W+ 
Sbjct: 58  SNDRC-------VVETNLVRFITGVL-LLHQGPIHKFQLSTSFKQCRP-----DIDQWLL 104

Query: 117 FAVDKRVQRLELDFSES------------KTEGHEL-HT-FSP--YFKTTSSFSSLVSLR 160
           F     ++ L L   E             K    EL H  F P  YFK    FS L SL 
Sbjct: 105 FLSRNGIKELVLKLGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFK---GFSYLKSLN 161

Query: 161 LIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYL--ELRDLPNLSNL 218
           L  + +  EV+  L+  CPLLE L+L   + L+ + +S P+L   YL  E +D+     L
Sbjct: 162 LHQILVAPEVIESLISGCPLLEFLSLSYFDSLV-LSISAPNLMYLYLDGEFKDI----FL 216

Query: 219 EINAPNLVSFEFS 231
           E N P LV+   S
Sbjct: 217 E-NTPKLVAISVS 228

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFU7|FBL90_ARATH Putative F-box/LRR-repeat protein At5g54820 OS=Arabidopsis thaliana GN=At5g54820 PE=4 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 134/294 (45%), Gaps = 45/294 (15%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTG----SLDFVDPYKIRRLA 58
           DR+S LPD +LI I+S L ++E  R S+LS RWRYL    T       D+V+P       
Sbjct: 7   DRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLCLETTNLSFKESDYVNP------D 60

Query: 59  ILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYP--VNSDYDVDSWVQ 116
           I    Y +        V  R+F   VD  + + Q + ++   IC+   V  +  +D+ ++
Sbjct: 61  ITDAEYSRI-------VAYRSFFCSVDKWVSITQHQVVESFEICFSHLVGFEDKIDALIE 113

Query: 117 FAVDKRVQRLELDFSES--KTEG-----HELHTF--SPYFKTT-------------SSFS 154
           +AV  RV+ L +D S    ++ G     H ++T   S Y  TT             S F 
Sbjct: 114 YAVSTRVKNLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSLTTLESLKIYGCKFDPSKFV 173

Query: 155 SLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLP 213
           + V LR + +  +  E LH LL   P L+ L++K    +    ++G   +L  +E  D  
Sbjct: 174 NPVLLRSLSIGWVRLENLHSLLSKSPSLQSLSIKNCWGVDITSMAGQFREL-VIEHSDFS 232

Query: 214 NLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSS 267
            +       P + SF++S GEL   +  V +++  ++  D+    VY L   SS
Sbjct: 233 YM-QCAFELPRIHSFKYS-GELFEFYFDVVNVIIPNVYLDFGEERVYDLQSQSS 284

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXJ7|FBD11_ARATH FBD-associated F-box protein At3g52670 OS=Arabidopsis thaliana GN=At3g52670 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 120/287 (41%), Gaps = 68/287 (23%)

Query: 2   DDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILS 61
           +DR+++LP+D+++ ILS L  E     S+LS +WR LW+             +  L   S
Sbjct: 9   EDRMNQLPEDLILRILSFLPTELVIATSVLSKQWRSLWKL------------VPNLEFDS 56

Query: 62  DPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDK 121
           D  Y+ E   F  +  ++F++L  P+L  L    L   +   PV    D+  W+  A  +
Sbjct: 57  DD-YESEHYTFSEIVCKSFLSLKAPVLKSLH---LSFRKSVNPV----DIGLWIGIAFAR 108

Query: 122 RVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIP-------------- 167
            ++ L L  +  +T      TF       ++  +L  +  I VDIP              
Sbjct: 109 HLRELVLYVAPKQT-----FTFPSSLCICNTLETLKLILGIHVDIPCPVLLKSLRTLHLD 163

Query: 168 ------EEVLHYLLCYCPLLEVLTL-KGAEKLIRIRVSGPSLK----------------- 203
                 EE +  LL  CP+LE L + +    ++   +  PSLK                 
Sbjct: 164 SVSYKDEESIRNLLSSCPILENLVVYEYWYNVVNFDIEVPSLKRLEICDVLHKKEFRRYT 223

Query: 204 -----LKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSL 245
                LKYL +  L     L +NAP LV   F+ G LI++ K + SL
Sbjct: 224 INVPCLKYLRIEGLNKDFELCLNAPELVEAYFTKGSLIIADKFLGSL 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAG4|FB93_ARATH F-box protein At1g80960 OS=Arabidopsis thaliana GN=At1g80960 PE=2 SV=3

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 42/249 (16%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFT--------------GSLDF 48
           D ISKLPDD+L+ ILSRL+ EEA R S++S RW ++W   +               +LD 
Sbjct: 50  DWISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHVWNQMSHLVFDMRKNIINSNNTLDG 109

Query: 49  VDPYKIRRLAILSDPYYKCEDNYFIRVKRRNFINLVDPILGLL----QTKSLQQLRICYP 104
            +P       ++++     E    I V  +    +++  + LL    +TK L  LR    
Sbjct: 110 SNPVATLITQVINNHRGHLESCVIIHVPYQGGNGMLNSWIRLLSCVKRTKVL-TLR---- 164

Query: 105 VNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFS--PYFKTTS----SFSSLVS 158
               Y   +W     D++ +    +FS        L + S   YF  +S    + S+L +
Sbjct: 165 ----YHYGTW-----DRKFK--TFNFSPDSLSHPSLMSLSLHSYFLESSHPLRNCSNLRT 213

Query: 159 LRLIDVDIPE-EVLHYLLCYCPLLEVLTLK-GAEKLIRIRVSGPSLKLKYLELRDLPNLS 216
           L+L+ +  PE  V + +L  CP LEVL L     K  R+ +   + KLK L++  L  + 
Sbjct: 214 LKLLSIVAPEIGVFNRVLASCPCLEVLVLGICCFKKSRVPLKIENKKLKLLQVSSLERID 273

Query: 217 NLEINAPNL 225
            +E++  +L
Sbjct: 274 AIEVSTTSL 282

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
255544812	464	ubiquitin-protein ligase, putative [Rici	0.947	0.581	0.409	4e-49
357477131	447	F-box family-6 [Medicago truncatula] gi|	0.950	0.606	0.367	2e-40
356544606	444	PREDICTED: putative F-box protein At3g58	0.915	0.587	0.381	2e-39
449440973	475	PREDICTED: putative FBD-associated F-box	0.933	0.56	0.355	6e-30
302142991	402	unnamed protein product [Vitis vinifera]	0.954	0.676	0.326	2e-29
255540581	457	ubiquitin-protein ligase, putative [Rici	0.782	0.487	0.383	1e-27
297736820	487	unnamed protein product [Vitis vinifera]	0.961	0.562	0.268	1e-20
147865783	1789	hypothetical protein VITISV_020815 [Viti	0.961	0.153	0.275	3e-20
357155585	449	PREDICTED: LOW QUALITY PROTEIN: putative	0.8	0.507	0.283	3e-15
242047392	256	hypothetical protein SORBIDRAFT_02g00277	0.670	0.746	0.323	3e-15

>gi|255544812|ref|XP_002513467.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547375|gb|EEF48870.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/286 (40%), Positives = 181/286 (63%), Gaps = 16/286 (5%)

Query: 1   MDDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAIL 60
           + + IS+LP+D+L+ ILSRLT++EAAR SILS RWR+LW ++TG +DF     +  L + 
Sbjct: 31  ISEHISQLPEDVLLNILSRLTMKEAARTSILSTRWRHLWTYYTGIMDFDASLTMWYLQL- 89

Query: 61  SDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSD--YDVDSWVQFA 118
                    +  + ++R +F++ V+ +L   +  +++ LRIC+ ++SD  Y++DSW+  A
Sbjct: 90  ------GLGSKSLDMERHSFVSWVNQVLRSHEGPTMEGLRICFDLDSDFMYEIDSWITIA 143

Query: 119 VDKRVQRLELDFSES----KTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVL-HY 173
           + KRV+RLE+D +      KT G   + F       SSFSSL +L+L  VD+  E L H 
Sbjct: 144 MQKRVKRLEIDLTNIEPSIKTTGS--YAFPSGLLNDSSFSSLKTLQLNMVDVTGEALQHL 201

Query: 174 LLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAG 233
           LL +CPLLEVL++  +  L+ ++VSG SLKLKYLE+    NL  LEI A +LVSF++   
Sbjct: 202 LLSWCPLLEVLSIVNSTSLVSLKVSGSSLKLKYLEMVCCNNLKYLEITAASLVSFKYYGP 261

Query: 234 ELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279
            + + FK VP+LV+ S  G +C   +  L+QFS ++ QL TL+ ++
Sbjct: 262 LIGLPFKSVPNLVDASFGGPFCQLTIENLYQFSLYILQLETLRFDV 307

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477131|ref|XP_003608851.1| F-box family-6 [Medicago truncatula] gi|355509906|gb|AES91048.1| F-box family-6 [Medicago truncatula]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/286 (36%), Positives = 160/286 (55%), Gaps = 15/286 (5%)

Query: 2   DDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDF----VDPYKIRRL 57
           +D I++LPD I I IL+ L I+EAAR SILS +W+ LW +F+G+L+F    +    I+ L
Sbjct: 24  EDIINQLPDGIPINILANLPIKEAARTSILSRKWKNLWTYFSGTLEFEGSPIMKDMIKDL 83

Query: 58  AILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQF 117
             ++    +         +R+ + + ++ +L  LQ  +LQ L+  +P+ +  D+D+W+ F
Sbjct: 84  KKVTGGRLQMAMEIMYDAERQTYTSWINELLSSLQCSTLQGLKFWFPMKNVSDIDNWIHF 143

Query: 118 AVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCY 177
           AV K+VQ+LEL F  +      LH F         F+SL  LR+  + + +E+L YL+C 
Sbjct: 144 AVQKKVQKLELYFGHTIVYVLPLHIFK-----VERFNSLCVLRMKSITVTDEMLEYLMCN 198

Query: 178 CPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIV 237
           C LLE L+L  +     ++VSG SLKLK LEL     L+ +EI A  LVSF++    L  
Sbjct: 199 CQLLETLSLVDSRVPKTMKVSGSSLKLKCLELVRCWELTKIEIFAEKLVSFKYYGSHLET 258

Query: 238 SFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAVS 283
            FK VP L E S  G +  +         SFLPQ++ LKL++   S
Sbjct: 259 EFKSVPCLEEASFGGSFVEFVR------ESFLPQIKVLKLDITQNS 298

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544606|ref|XP_003540740.1| PREDICTED: putative F-box protein At3g58860-like [Glycine max]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 170/296 (57%), Gaps = 35/296 (11%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDF---VDPYKIRR--L 57
           D IS +PDDIL  ILSRLT++EAAR S+L+ +WRY W FF+G LDF   +  + +RR  +
Sbjct: 11  DIISTMPDDILGDILSRLTLKEAARTSVLATKWRYHWTFFSGLLDFDHSLRNFHLRREHV 70

Query: 58  AILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQF 117
            IL+    KC  N F+    R F+  +  ++  L++ SLQ LRIC  +   + V  WV++
Sbjct: 71  GILT----KC--NVFVYEWER-FMTRMANVMKSLKSSSLQGLRICMDLGDPWRVAEWVKY 123

Query: 118 AVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSS------------FSSLVSLRLIDVD 165
           A +K VQ L+LDFS         H   P+++ + +              SL +LRL  VD
Sbjct: 124 AAEKHVQTLDLDFS--------YHFSVPFYEISLTIVHNVFPSRGYEMKSLCNLRLSSVD 175

Query: 166 IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNL 225
           +  EV+  LL  CPLLE + +  +++L+R++V G +L+LK+LEL +   + +L+I A NL
Sbjct: 176 VSGEVIEGLLASCPLLESICVIESKRLVRLKVRGEALRLKHLELVEC-RIMDLDIYAVNL 234

Query: 226 VSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQ--FSSFLPQLRTLKLNL 279
           V+F +        F++VPSLVE S  G +C+Y    + +  F   L Q+  LKL L
Sbjct: 235 VTFRYQGKYGKFKFQNVPSLVEASFGGIFCSYLESDMDRVDFYGVLLQINVLKLEL 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440973|ref|XP_004138258.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus] gi|449501454|ref|XP_004161371.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus]

 Score =  137 bits (345), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/290 (35%), Positives = 162/290 (55%), Gaps = 24/290 (8%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
           D IS LP DIL+ ILS L ++EAAR S LS++WR LW F    L+F D +K      L D
Sbjct: 45  DSISHLPQDILVFILSLLPLKEAARTSTLSHKWRCLWSFIP-CLNF-DAHKK-----LLD 97

Query: 63  PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDY--DVDSWVQFAVD 120
             +  E+   ++ +RR F+  V+ ++   +  +L+ LRI + ++S +  DVD WVQFA+ 
Sbjct: 98  LQFTDEN---LKSERRQFVKWVNRVIDSYKGSNLETLRIRFNLDSSFQCDVDRWVQFAMQ 154

Query: 121 KRVQRLELDFSESKTEG-HELHTFS----------PYFKTTSSFSSLVSLRLIDVDIPEE 169
            +++  EL+ S+S   G +   +F           P F  ++S SSL +L+LI V++  E
Sbjct: 155 WKLKMFELNLSDSYDSGIYSPCSFPQLSDGPKENFPRFMFSNS-SSLKTLKLIAVNVGGE 213

Query: 170 VLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFE 229
            L   L   PLLE+L ++ +  L+ +RV G SLKL+ LE+     L +LE++APNL SF+
Sbjct: 214 ALECFLTNSPLLEILVVEYSHCLLSLRVVGASLKLRQLEVCMCNYLESLEVSAPNLESFK 273

Query: 230 FSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL 279
           +    L +  K+ P L+E     ++    +      SS+  QL+ L L+L
Sbjct: 274 YVGPWLSMPLKNTPKLLETYFGSEFGVEIIDHFFLLSSYSSQLQKLILDL 323

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142991|emb|CBI20286.3| unnamed protein product [Vitis vinifera]

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 162/312 (51%), Gaps = 40/312 (12%)

Query: 2   DDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDF--VDPYKIRRLAI 59
           +D +S+LPD+ILI ILSRLT+ EAA  S+LS RWRYLW + T  L+F  V    +RR   
Sbjct: 21  EDLLSELPDEILISILSRLTLREAAATSVLSQRWRYLWTY-TSRLNFDSVVNKIVRR--- 76

Query: 60  LSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQT-KSLQQLRICYPVN--SDYDVDSWVQ 116
                +        R +RR +I  V  +L   +  ++L + R+C+ ++  S  D+D W +
Sbjct: 77  --SHSFALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKWFE 134

Query: 117 FAVDKRVQRLELDFSESKTEGHE-------LHTFSPYFKTTS----------------SF 153
           FA+ K V+ LE DF    ++  +       L  F  ++K                    F
Sbjct: 135 FAMSKNVKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFVGF 194

Query: 154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLP 213
            SL +L L  +++  E + Y L  CPLLE L++ G+E L+ +RV+GPS+ L++LE+    
Sbjct: 195 KSLKTLSLKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRVAGPSIMLRHLEIVKCS 254

Query: 214 NLSNLEINAPNLVSFEFSA---GELIVSFKHV---PSLVEMSIEGDYCTYFVYTLHQFSS 267
           ++  +EI   NLVSF +     G+L+ +  H+   P LVE+        +    L + SS
Sbjct: 255 SIQTIEICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLAGVGRLGFAKNMLLKLSS 314

Query: 268 FLPQLRTLKLNL 279
            + QL+ L+L +
Sbjct: 315 CVHQLQILQLTV 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540581|ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223550470|gb|EEF51957.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 137/245 (55%), Gaps = 22/245 (8%)

Query: 2   DDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILS 61
           +DRIS LP++IL  ILS LT EEA+R S+LS RWR LW   T SL+F D  KI       
Sbjct: 18  EDRISHLPEEILTSILSFLTTEEASRTSVLSRRWRILWTL-TSSLNF-DCTKI------- 68

Query: 62  DPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPV--NSDYDVDSWVQFAV 119
               K +D + +R +R  F   V  +L + +  +L +  + + +  NS   +D W+ FA+
Sbjct: 69  ALGKKLDDRFALRSERTRFAMWVKRVLEVYKDSNLDEFIVSFDLTCNSRRSLDKWMNFAM 128

Query: 120 DKRVQRLELD---FSESKTEGHE--------LHTFSPYFKTTSSFSSLVSLRLIDVDIPE 168
            K ++RLE+    FS  K   H+         ++F    +  S+ SSL SL L  V++  
Sbjct: 129 SKTLKRLEISLAPFSSRKFRFHDECYSFPVDCYSFIRGPEGLSNISSLRSLCLRYVNMTG 188

Query: 169 EVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSF 228
           EV+ + L  CPLLE LT+  A +L  ++V   SL+LKYLE+ D  +L N EI APNLV+ 
Sbjct: 189 EVVEHFLLNCPLLEQLTVAVAYRLESLKVPASSLRLKYLEIFDCYHLKNFEICAPNLVTI 248

Query: 229 EFSAG 233
            ++ G
Sbjct: 249 LYNQG 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736820|emb|CBI26021.3| unnamed protein product [Vitis vinifera]

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 148/316 (46%), Gaps = 42/316 (13%)

Query: 2   DDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILS 61
           +D + +LPDDIL  I+S L ++EA R  ILS RWR +W     S  + D   +  +   S
Sbjct: 15  EDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWT--CHSELWFDAASVLGIGDCS 72

Query: 62  DPYYKCEDNYFIRVKRRNFINLVDPILGLL-QTKSLQQLRICYPVNSDY--DVDSWVQFA 118
                 +     +++   F+  VD  +    Q + +    I +P+  ++   +D W+  A
Sbjct: 73  TSMSGNQPELNSQMQSSKFVERVDQFMYYRSQGRKINSFSIHFPLGKEFMSHIDQWITCA 132

Query: 119 VDKRVQRLELDFSE----------SKTEGHELHTFS-----------------------P 145
           V K V+ ++LD SE          + +   +++ F                         
Sbjct: 133 VMKGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLASCHLS 192

Query: 146 YFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLK 205
              ++++ +SL+++ L  V+I ++ L  LL  C  LE L+L     L+ +  S  +L+LK
Sbjct: 193 ALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLEWLSLCVCNGLVNLSFSALNLQLK 252

Query: 206 YLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIE----GDYCTYFVYT 261
           +L +++   L  +EI+A +LV+F++       SFK+VP L + S+E           +Y 
Sbjct: 253 FLSIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGVMYA 312

Query: 262 LHQFSSFLPQLRTLKL 277
           L +F   LPQL TLKL
Sbjct: 313 LTRFPQDLPQLETLKL 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865783|emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 148/316 (46%), Gaps = 42/316 (13%)

Query: 2    DDRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILS 61
            +D + +LPDDIL  I+S L ++EA R  ILS RWR +W     S  + D   +  +   S
Sbjct: 1317 EDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCH--SELWFDAASVLGIGDCS 1374

Query: 62   DPYYKCEDNYFIRVKRRNFINLVDPILGLL-QTKSLQQLRICYPVNSDY--DVDSWVQFA 118
                  +     +++   F+  VD  +    Q   +    I +P+  ++   +D W+  A
Sbjct: 1375 XSMSGNQPELNSQMQSXKFVERVDQFMYYRSQGPKINSFSIHFPLGKEFMSHIDQWITCA 1434

Query: 119  VDKRVQRLELDFSE----------SKTEGHELHTFS------PYFKTT------------ 150
            V K V+ ++LD SE          + +   +++ F       P  + T            
Sbjct: 1435 VMKGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLASCHLS 1494

Query: 151  -----SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLK 205
                 ++ +SL+++ L  V+I ++ L  LL  C  LE L+L     L+ +  S  +L+LK
Sbjct: 1495 ALPSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLERLSLCVCNGLVNLSFSALNLQLK 1554

Query: 206  YLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIE----GDYCTYFVYT 261
            +L +++   L  +EI+A +LV+F++       SFK+VP L + S+E           +Y 
Sbjct: 1555 FLSIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGVMYA 1614

Query: 262  LHQFSSFLPQLRTLKL 277
            L +F   LPQL TLKL
Sbjct: 1615 LTRFPQDLPQLETLKL 1630

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357155585|ref|XP_003577168.1| PREDICTED: LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At5g54820-like [Brachypodium distachyon]

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 133/272 (48%), Gaps = 44/272 (16%)

Query: 8   LPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSDPYYKC 67
           LP+DIL  I+SRLT+++A R S++S  WR++W++          + I R  I S    K 
Sbjct: 13  LPEDILSIIVSRLTLKDAVRTSVVSSDWRHIWKY----------HPILRFVISSVLGSKA 62

Query: 68  E-----DNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDY--DVDSWVQFAVD 120
           +     D +  R+++R FI+ V  IL      ++ +L + + +  ++   +D WV FA+ 
Sbjct: 63  KRKRSSDQHKRRLRKR-FIDRVSYILSKXSGLAVSKLAVKFDLREEHADHIDGWVYFAIA 121

Query: 121 KRVQRLELDFSESKTEGHELH-TFSPYFKTTSSFSSLVSLRLIDVDIPEEV--------- 170
              + L L+FS     G+E H TF  +   + + S L +LRL  V++   +         
Sbjct: 122 SMAKILTLNFSP--YLGYENHYTFPCHLFNSKNASYLQALRLDSVNLVPSIDFCGFANLK 179

Query: 171 ------------LHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNL 218
                       L Y L  CP LE L+++          S P  +LKYL +++   +  +
Sbjct: 180 MLALDHVLVMQDLQYFLSKCPALEWLSIQRCYLKCNCHASAPLGRLKYLCVKNC-EVDRI 238

Query: 219 EINAPNLVSFEFSAGELIVSFKHVPSLVEMSI 250
           E  APNL +FE+   ++++ F H  S ++M+I
Sbjct: 239 EFAAPNLNTFEYRGYQILIKF-HECSKLKMAI 269

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242047392|ref|XP_002461442.1| hypothetical protein SORBIDRAFT_02g002773 [Sorghum bicolor] gi|241924819|gb|EER97963.1| hypothetical protein SORBIDRAFT_02g002773 [Sorghum bicolor]

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 35/226 (15%)

Query: 3   DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
           DRIS LPD ILI ILS +T+ EAA   +LS RWR+LW     S+D +    +    +   
Sbjct: 35  DRISSLPDGILINILSLMTVREAAVTDVLSTRWRHLWE----SVDHL-ILDMHTFGMQVP 89

Query: 63  PYYKCEDNY-FIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDY--DVDSWVQFAV 119
           P      N  F   +   F+  V+ +L   +   L++ ++ +P++S +  ++D WV FAV
Sbjct: 90  PNSDNHGNLDFSNSEATTFVRKVNELLSHHKGNKLKEFKVEFPLSSAHASELDRWVAFAV 149

Query: 120 DKRVQ-----------RLELDFSE---------SKTEGHELHTFSPY---FKTT----SS 152
               +           R+ +D  E         S   G +LH  S Y   F+T     S 
Sbjct: 150 ASHAETLTLSLCDEHGRIAIDHREAYFFPLKQFSDVGGCQLHVLSLYECIFETVPANLSG 209

Query: 153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS 198
           FS L SL L +V + +EVL  ++  C  L  L L+   KLI +RVS
Sbjct: 210 FSCLYSLSLCNVRVVDEVLLSIMSSCNALCYLYLRSCHKLIDLRVS 255

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2160205	472	AT5G54820 [Arabidopsis thalian	0.887	0.536	0.282	3e-12
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.715	0.490	0.314	3.1e-11
TAIR|locus:2161088	421	AT5G56370 "AT5G56370" [Arabido	0.133	0.090	0.552	1.3e-10
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.810	0.505	0.306	1.5e-10
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.835	0.494	0.271	1.5e-09
TAIR|locus:2037558	452	AT1G78760 "AT1G78760" [Arabido	0.554	0.349	0.254	4.6e-09
TAIR|locus:2129266	434	AT4G13960 "AT4G13960" [Arabido	0.403	0.264	0.354	5.5e-09
TAIR|locus:2025812	486	AT1G80960 "AT1G80960" [Arabido	0.740	0.434	0.265	7.6e-09
TAIR|locus:2081157	520	AT3G59200 "AT3G59200" [Arabido	0.743	0.407	0.311	1.5e-08
TAIR|locus:2151261	469	AT5G02930 "AT5G02930" [Arabido	0.870	0.528	0.278	3.5e-08

TAIR|locus:2160205 AT5G54820 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 82/290 (28%), Positives = 135/290 (46%)

Query:     3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
             DR+S LPD +LI I+S L ++E  R S+LS RWRYL    T +L F +   +     ++D
Sbjct:     7 DRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLC-LETTNLSFKESDYVN--PDITD 63

Query:    63 PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYP--VNSDYDVDSWVQFAVD 120
               Y     Y      R+F   VD  + + Q + ++   IC+   V  +  +D+ +++AV 
Sbjct:    64 AEYSRIVAY------RSFFCSVDKWVSITQHQVVESFEICFSHLVGFEDKIDALIEYAVS 117

Query:   121 KRVQRLELDFSES--KTEG-----HELHTF--SPYFKTT-------------SSFSSLVS 158
              RV+ L +D S    ++ G     H ++T   S Y  TT             S F + V 
Sbjct:   118 TRVKNLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSLTTLESLKIYGCKFDPSKFVNPVL 177

Query:   159 LRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSN 217
             LR + +  +  E LH LL   P L+ L++K    +    ++G   +L  +E  D   +  
Sbjct:   178 LRSLSIGWVRLENLHSLLSKSPSLQSLSIKNCWGVDITSMAGQFREL-VIEHSDFSYMQ- 235

Query:   218 LEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSS 267
                  P + SF++S GEL   +  V +++  ++  D+    VY L   SS
Sbjct:   236 CAFELPRIHSFKYS-GELFEFYFDVVNVIIPNVYLDFGEERVYDLQSQSS 284

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 78/248 (31%), Positives = 110/248 (44%)

Query:     3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
             D IS LP  I+  IL+RL+I +A R S+LS +WRY W   T   D V   K      +S 
Sbjct:     6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLT---DLVFDEKC-----VSP 57

Query:    63 PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDY-DVDSWVQFAVDK 121
                +C       V   N +  +  +L LL    + + ++         D+D W+ F    
Sbjct:    58 SNDRC-------VVETNLVRFITGVL-LLHQGPIHKFQLSTSFKQCRPDIDQWLLFLSRN 109

Query:   122 RVQRLELDFSES------------KTEGHEL-HT-FSP--YFKTTSSFSSLVSLRLIDVD 165
              ++ L L   E             K    EL H  F P  YFK    FS L SL L  + 
Sbjct:   110 GIKELVLKLGEGEFRVPACLFNCLKLTCLELCHCEFDPPQYFK---GFSYLKSLNLHQIL 166

Query:   166 IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYL--ELRDLPNLSNLEINAP 223
             +  EV+  L+  CPLLE L+L   + L+ + +S P+L   YL  E +D+     LE N P
Sbjct:   167 VAPEVIESLISGCPLLEFLSLSYFDSLV-LSISAPNLMYLYLDGEFKDI----FLE-NTP 220

Query:   224 NLVSFEFS 231
              LV+   S
Sbjct:   221 KLVAISVS 228

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161088 AT5G56370 "AT5G56370" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query:     3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWR 40
             D IS LPDD L+ ILS L  ++    S+LS RWRYLW+
Sbjct:     2 DSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWRYLWK 39

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 83/271 (30%), Positives = 123/271 (45%)

Query:     3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
             D  SKLPD+++  ILS L  +EAA  S+L+ +WRYL+ F   SLDF D         L  
Sbjct:     7 DLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVP-SLDFNDS------DFLHP 59

Query:    63 PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYD-VDSWVQFAVDK 121
                K E +  +R    +F++ VD +L L     +++  +      D D VD W+   + +
Sbjct:    60 QEGKREKDGILR----SFMDFVDRVLALQGASPIKKFSLNVKTGVDPDRVDRWICNVLQR 115

Query:   122 RVQRLEL--DFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD--IP-------EEV 170
              V  L L  DF E  +  +E+       +  + +   V L L D D  +P       E V
Sbjct:   116 GVSHLALFMDFEEEYSLPYEISVSKTLVELKTGYG--VDLYLWDDDMFLPMLKTLVLESV 173

Query:   171 ------LHYLLCYCPLLEVLTLKGAE-KLIRIRVSGPSLKLKYLELRDLPNLSNLEINAP 223
                      LL  CP+LE L L   E K   + +S  SLK   +   D   L  L  + P
Sbjct:   174 EFGRGQFQTLLPACPVLEELMLLNMEWKDRNVILSSSSLKNLKITSED-GCLGTLSFDTP 232

Query:   224 NLVS---FEFSAGEL-IVSFKHVPSLVEMSI 250
             NLV    +++ A +  IV+ K+   LVE+ I
Sbjct:   233 NLVFLDYYDYVAEDYPIVNLKN---LVEVGI 260

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 70/258 (27%), Positives = 121/258 (46%)

Query:     3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDF----VDPYKIRRL- 57
             D IS+LPDDIL  ILS L    A + S+LS RWR++W   T SL F     D   I R+ 
Sbjct:    37 DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSD-TWSLSFHRDRPDAPCINRIL 95

Query:    58 ----AILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDS 113
                 A     +  C       + R +    +D  +    +++++ L + Y     YD+  
Sbjct:    96 DRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSL-YLDEDKYDIPE 154

Query:   114 WVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHY 173
             ++   ++  +++L LDF   K    +  + +P  K + S++SL +L L   +I +E +  
Sbjct:   155 FLY--INSSLKQLYLDFGCKK----DFISLNP--KCSVSWTSLKNLSLYHCNISDESIAI 206

Query:   174 LLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAG 233
             +L  CP+LE L L   +KL  + +S  S +L  LE+     +   ++ AP++        
Sbjct:   207 ILSGCPILESLLLFFCKKLKVLDLS-KSPRLITLEITRRCRMEPTQLVAPHIRCLRLINS 265

Query:   234 ELIVSFKHVPSLVEMSIE 251
             E   +   V SL +  ++
Sbjct:   266 EKPCALVDVSSLSQAELD 283

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037558 AT1G78760 "AT1G78760" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
 Identities = 44/173 (25%), Positives = 82/173 (47%)

Query:    63 PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDY----DVDSWVQFA 118
             P    E N F+      F++ VD  L L +    Q  R+ Y  + +     +V  W+   
Sbjct:    56 PGLNVEYNQFLDYNA--FVSFVDRFLALDRESCFQSFRLRYDCDEEERTISNVKRWINIV 113

Query:   119 VDKRVQRLE-LDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPE-EVLHYLLC 176
             VD++++ L+ LD+    T G+E     P   T  S   LVSL+L +V +P  +V+   L 
Sbjct:   114 VDQKLKVLDVLDY----TWGNEEVQIPPSVYTCES---LVSLKLCNVILPNPKVISLPLV 166

Query:   177 YCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFE 229
                 L+++    A  L +I  S  +L+   +    + +++ L +++ +L+SF+
Sbjct:   167 KVIELDIVKFSNALVLEKIISSCSALESLIISRSSVDDINVLRVSSRSLLSFK 219

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129266 AT4G13960 "AT4G13960" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
 Identities = 45/127 (35%), Positives = 67/127 (52%)

Query:     3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
             D +S LPD++L  ILS LT +EAA  SILS RWR L+ F   +LD  D       ++   
Sbjct:     2 DHVSSLPDEVLYHILSFLTTKEAALTSILSKRWRNLFTFVP-NLDIDD-------SVFLH 53

Query:    63 PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSD-YDVDSWVQFAVDK 121
             P    ED Y I+   ++F+  VD +L L     +++L +      D + VD W+  A+ +
Sbjct:    54 PQEGKEDRYEIQ---KSFMKFVDRVLALQGNSPIKKLSLKLRTGFDSHRVDGWISNALAR 110

Query:   122 RVQRLEL 128
              V  L+L
Sbjct:   111 GVTELDL 117

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2025812 AT1G80960 "AT1G80960" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 65/245 (26%), Positives = 115/245 (46%)

Query:     3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFT--------------GSLDF 48
             D ISKLPDD+L+ ILSRL+ EEA R S++S RW ++W   +               +LD 
Sbjct:    50 DWISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHVWNQMSHLVFDMRKNIINSNNTLDG 109

Query:    49 VDPYKIRRLAILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSD 108
              +P       ++++     E    I V  +    +++  + LL    +++ ++   +   
Sbjct:   110 SNPVATLITQVINNHRGHLESCVIIHVPYQGGNGMLNSWIRLLSC--VKRTKV---LTLR 164

Query:   109 YDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFS--PYFKTTS----SFSSLVSLRLI 162
             Y   +W     D++ +    +FS        L + S   YF  +S    + S+L +L+L+
Sbjct:   165 YHYGTW-----DRKFKTF--NFSPDSLSHPSLMSLSLHSYFLESSHPLRNCSNLRTLKLL 217

Query:   163 DVDIPE-EVLHYLLCYCPLLEVLTLK-GAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI 220
              +  PE  V + +L  CP LEVL L     K  R+ +   + KLK L++  L  +  +E+
Sbjct:   218 SIVAPEIGVFNRVLASCPCLEVLVLGICCFKKSRVPLKIENKKLKLLQVSSLERIDAIEV 277

Query:   221 NAPNL 225
             +  +L
Sbjct:   278 STTSL 282

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081157 AT3G59200 "AT3G59200" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 79/254 (31%), Positives = 114/254 (44%)

Query:     3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSD 62
             DRIS LP+ ++  ILS L  +EAA  S+LS +WRYL+ + T +LDF D          SD
Sbjct:     7 DRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVT-NLDFDD----------SD 55

Query:    63 PYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRI-CYPVNSDYDVD-----SWVQ 116
              Y   +    + + R +F+  VD +L L    S+ +  + C    S+YDVD      W+ 
Sbjct:    56 -YQDGKPKSDVELSR-SFMEFVDRVLALQGNGSVNKFSLEC----SNYDVDLARVTGWIL 109

Query:   117 FAVDKRVQRLELDFSE---------SKTEGH-ELHTFSPYFKTTSS---FSSLVSLRLID 163
               + + V  L+L   E         SKT    +L   +    T      F   +    ID
Sbjct:   110 NVLGRGVSELDLSILEYPLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYID 169

Query:   164 -VDIPEEVLHY--LLCYCPLLEVLTLK--GAEKLIRIRVSGPSLK-LKYLELRDLPNLSN 217
              VD+ E    +  LL  CP+LE L L   G E      VS  +LK L +       N  +
Sbjct:   170 CVDVQERGFGFVKLLSGCPVLEELVLMNIGWENWKFCSVSVKTLKRLTFFCEETYENPKS 229

Query:   218 LEINAPNLVSFEFS 231
             +  + PNLV  E+S
Sbjct:   230 VSFDTPNLVYLEYS 243

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151261 AT5G02930 "AT5G02930" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 78/280 (27%), Positives = 123/280 (43%)

Query:     3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRFFTGSLDF----VDPYKIRRLA 58
             D IS LPD +L  I S +  E A R S+LS RWR++W   T  L F    V P  I +  
Sbjct:    28 DSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSE-TPHLSFEWLKVSPKLINK-T 85

Query:    59 ILSDPYYKCEDNYFI-RVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSD-YDVDSWVQ 116
             + S    K +  +   R       + V+  +    + ++  L + +   S  Y+ D    
Sbjct:    86 LASYTASKIKSFHLCTRYSYEADTHHVNSSIEFAMSHNVDDLSLAFRRCSPFYNFDDC-- 143

Query:   117 FAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLC 176
             F  +  ++R+EL + +            P  +   S++SL +L L D  + +E    +L 
Sbjct:   144 FYTNSSLKRVELRYVD----------LMP--RCMVSWTSLKNLSLTDCTMSDESFLEILS 191

Query:   177 YCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDL-----PNLSNLEINAPNLVSFEFS 231
              CP+LE L+LK    L  + +S  SL+L  LE+  +     P LS ++I AP +      
Sbjct:   192 GCPILESLSLKFCMSLKYLNLS-KSLRLTRLEIERISYIRAPMLS-MQIVAPYIHYLRLR 249

Query:   232 AGELIVSFKHVPSLVEMSIEGDYCTYFVYTL-HQFSSFLP 270
               E   +F  V SL E ++  D  T+   T  H F    P
Sbjct:   250 DSEAHCTFVDVSSLTEANV--DVSTFHPRTCYHDFDPLDP 287

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb02g002773.1 hypothetical protein (256 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
pfam00646	48	pfam00646, F-box, F-box domain	3e-04
pfam12937	47	pfam12937, F-box-like, F-box-like	4e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 3  DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWR 40
            +  LPDD+L+ ILSRL  ++  R S++S RWR L  
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 5  ISKLPDDILICILSRLTIEEAARASILSYRWR------YLWR 40
          +S LPD+IL+ I S L   +  R +++  RWR       LWR
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWR 42

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.55
KOG4341	483	consensus F-box protein containing LRR [General fu	99.41
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.01
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.57
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.46
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.15
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.92
KOG4341	483	consensus F-box protein containing LRR [General fu	97.75
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.54
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.49
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.49
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.34
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.32
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.27
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.27
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.24
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.2
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.03
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	96.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.89
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.4
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	95.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.72
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.65
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.63
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	94.53
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.51
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.28
PRK15386	426	type III secretion protein GogB; Provisional	93.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	93.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	92.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	92.3
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	90.62
PF13013	109	F-box-like_2: F-box-like domain	89.99
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	84.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	84.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	84.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	82.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	82.22
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	81.59
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	81.45
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	81.06

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.5e-16  Score=129.92  Aligned_cols=249  Identities=24%  Similarity=0.256  Sum_probs=147.1

Q ss_pred             CCCCChHHHHHHHhcCChhhHhhhcccccchhh------hccccCCceeecCccchhcccc--cCCCcccccchhhhhhh
Q 023267            5 ISKLPDDILICILSRLTIEEAARASILSYRWRY------LWRFFTGSLDFVDPYKIRRLAI--LSDPYYKCEDNYFIRVK   76 (285)
Q Consensus         5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~------lw~~~~~~l~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   76 (285)
                      +..|||||+..||+.|+-+|+.+++.|||||++      +|.    .++..+..+.|..-.  ..+-.      ..++..
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~----~lDl~~r~i~p~~l~~l~~rgV------~v~Rla  167 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ----TLDLTGRNIHPDVLGRLLSRGV------IVFRLA  167 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee----eeccCCCccChhHHHHHHhCCe------EEEEcc
Confidence            468999999999999999999999999999986      577    666666644432100  00000      000000


Q ss_pred             --hhhHHHhHHHHHhccCCCCCceEEEEeeCCCcccHHHHHHHHHh-CCceEEEEEecCCCCCCCceeecCcccc-CCCC
Q 023267           77 --RRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVD-KRVQRLELDFSESKTEGHELHTFSPYFK-TTSS  152 (285)
Q Consensus        77 --~~~~~~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wl~~~~~-~~v~~L~l~~~~~~~~~~~~~~~p~~~~-~~~~  152 (285)
                        ..+-.+++..+.-.+  .+++.+.++-...   .+......... ..++.+.+....          +..... ..+.
T Consensus       168 r~~~~~prlae~~~~fr--sRlq~lDLS~s~i---t~stl~~iLs~C~kLk~lSlEg~~----------LdD~I~~~iAk  232 (419)
T KOG2120|consen  168 RSFMDQPRLAEHFSPFR--SRLQHLDLSNSVI---TVSTLHGILSQCSKLKNLSLEGLR----------LDDPIVNTIAK  232 (419)
T ss_pred             hhhhcCchhhhhhhhhh--hhhHHhhcchhhe---eHHHHHHHHHHHHhhhhccccccc----------cCcHHHHHHhc
Confidence              000001111111000  1233444432221   11222222222 244445444221          111110 1123


Q ss_pred             CCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcce---EEEeCCCCceeEEEEecCCC-C-----CeEEEeC
Q 023267          153 FSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIR---IRVSGPSLKLKYLELRDLPN-L-----SNLEINA  222 (285)
Q Consensus       153 ~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~---~~i~~~~~~L~~L~i~~c~~-l-----~~l~i~~  222 (285)
                      =.+|+.|+|+.+. |+..++.-+++.|..|.+|+|.+|...++   ..|.+-++++..|.++||.. +     ..+...|
T Consensus       233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc  312 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC  312 (419)
T ss_pred             cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence            3689999999988 99999999999999999999999976554   35566778899999999853 2     2233478


Q ss_pred             CCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          223 PNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       223 p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      |+|..|+++++..     ...+-..+.|+.+.++.+. ... ....-.+...|.|..|++..+
T Consensus       313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY-~i~-p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY-DII-PETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             CceeeeccccccccCchHHHHHHhcchheeeehhhhc-CCC-hHHeeeeccCcceEEEEeccc
Confidence            9999999987653     1234467899999998633 222 233333578888888887643

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.41  E-value=2.9e-15  Score=127.34  Aligned_cols=234  Identities=20%  Similarity=0.227  Sum_probs=135.5

Q ss_pred             CCChHHHHHHHhcCChhhHhhhcccccchhhh------ccccCCceeecCccchhcccccCCCcccccchhhhhhhhhhH
Q 023267            7 KLPDDILICILSRLTIEEAARASILSYRWRYL------WRFFTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNF   80 (285)
Q Consensus         7 ~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~l------w~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (285)
                      .||.|++..|||+|+++.+++++++|+-|..+      |. +.+..+|..+-       .                    
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q-~idL~t~~rDv-------~--------------------  125 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQ-HIDLFTFQRDV-------D--------------------  125 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccce-eeehhcchhcC-------C--------------------
Confidence            59999999999999999999999999999864      55 33333333330       0                    


Q ss_pred             HHhHHHHHhccCCCCCceEEEEeeCCCcccHHHHHHHH-HhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEE
Q 023267           81 INLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFA-VDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSL  159 (285)
Q Consensus        81 ~~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wl~~~-~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L  159 (285)
                      .+.|..++ .+.|..++.++++.......  .+.=.++ ..+|+++|.+..+...+ +....++      ...|+.|++|
T Consensus       126 g~VV~~~~-~Rcgg~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iT-d~s~~sl------a~~C~~l~~l  195 (483)
T KOG4341|consen  126 GGVVENMI-SRCGGFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKIT-DSSLLSL------ARYCRKLRHL  195 (483)
T ss_pred             CcceehHh-hhhccccccccccccccCCc--chhhHHhhhCCchhhhhhhcceecc-HHHHHHH------HHhcchhhhh
Confidence            12233333 34456788999987764321  1111122 23788888776543111 1001111      2357788888


Q ss_pred             EeeeEE-eChhHHHHHHhcCCccceeecccCCCcceEEEeC---CCCceeEEEEecCCC---------------------
Q 023267          160 RLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSG---PSLKLKYLELRDLPN---------------------  214 (285)
Q Consensus       160 ~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~---~~~~L~~L~i~~c~~---------------------  214 (285)
                      .|..|. +++-.++.+..+||+|++|++++|+.+..-.|..   .+..++.+...||..                     
T Consensus       196 ~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl  275 (483)
T KOG4341|consen  196 NLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL  275 (483)
T ss_pred             hhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence            888855 7777777788888888888888887654422221   222233443344532                     


Q ss_pred             -----CCeEEE-----eCCCceEEEEeccee-----eee-ecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          215 -----LSNLEI-----NAPNLVSFEFSAGEL-----IVS-FKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       215 -----l~~l~i-----~~p~L~~l~~~~~~~-----~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                           +....+     .+-.|+.+.+.++..     ... ..++++|+.+-+... -.+.+..+..+..+++.|+.|++.
T Consensus       276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c-~~fsd~~ft~l~rn~~~Le~l~~e  354 (483)
T KOG4341|consen  276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGC-QQFSDRGFTMLGRNCPHLERLDLE  354 (483)
T ss_pred             hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecccc-chhhhhhhhhhhcCChhhhhhccc
Confidence                 221111     133444454443321     011 225677777777753 235556666777778888777665


Q ss_pred             E
Q 023267          279 L  279 (285)
Q Consensus       279 ~  279 (285)
                      =
T Consensus       355 ~  355 (483)
T KOG4341|consen  355 E  355 (483)
T ss_pred             c
Confidence            3

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.01  E-value=2.7e-10  Score=69.11  Aligned_cols=36  Identities=42%  Similarity=0.662  Sum_probs=31.3

Q ss_pred             CCCCChHHHHHHHhcCChhhHhhhcccccchhhhcc
Q 023267            5 ISKLPDDILICILSRLTIEEAARASILSYRWRYLWR   40 (285)
Q Consensus         5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw~   40 (285)
                      |+.||+||+.+||++|+.+|+++++.|||+|+++..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999997543

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.57  E-value=1.7e-08  Score=61.46  Aligned_cols=36  Identities=47%  Similarity=0.668  Sum_probs=30.7

Q ss_pred             CCCCChHHHHHHHhcCChhhHhhhcccccchhhhcc
Q 023267            5 ISKLPDDILICILSRLTIEEAARASILSYRWRYLWR   40 (285)
Q Consensus         5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw~   40 (285)
                      ++.||+|++.+||++|+.+|.++++.|||+|+++..
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~   38 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD   38 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence            567999999999999999999999999999998766

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.46  E-value=9.4e-08  Score=55.90  Aligned_cols=33  Identities=45%  Similarity=0.649  Sum_probs=31.4

Q ss_pred             CChHHHHHHHhcCChhhHhhhcccccchhhhcc
Q 023267            8 LPDDILICILSRLTIEEAARASILSYRWRYLWR   40 (285)
Q Consensus         8 LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw~   40 (285)
                      ||+|++.+||++|+.+|+++++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999998765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.15  E-value=2.9e-06  Score=71.62  Aligned_cols=182  Identities=20%  Similarity=0.177  Sum_probs=104.5

Q ss_pred             CCceEEEEeeCCCcccHHHHHHHHHh--CCceEEEEEecCCCCCCCceeecCcccc----CCCCCCCccEEEeeeEEeCh
Q 023267           95 SLQQLRICYPVNSDYDVDSWVQFAVD--KRVQRLELDFSESKTEGHELHTFSPYFK----TTSSFSSLVSLRLIDVDIPE  168 (285)
Q Consensus        95 ~l~~l~l~~~~~~~~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~~~~p~~~~----~~~~~~~L~~L~L~~~~i~~  168 (285)
                      .+.+++++....+ ....+|+..+.+  +.+++..+....   .+...-.+|..+-    .+.++|.|+.|+|+.-.|+.
T Consensus        31 s~~~l~lsgnt~G-~EAa~~i~~~L~~~~~L~~v~~sd~f---tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   31 SLTKLDLSGNTFG-TEAARAIAKVLASKKELREVNLSDMF---TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             ceEEEeccCCchh-HHHHHHHHHHHhhcccceeeehHhhh---cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            4677777665443 457789888776  445544443211   1111122232221    14578999999999999987


Q ss_pred             hH---HHHHHhcCCccceeecccCCCcce--------------EEEeCCCCceeEEEEecCCCCCeEE--------EeCC
Q 023267          169 EV---LHYLLCYCPLLEVLTLKGAEKLIR--------------IRVSGPSLKLKYLELRDLPNLSNLE--------INAP  223 (285)
Q Consensus       169 ~~---l~~ll~~cp~Le~L~L~~c~~~~~--------------~~i~~~~~~L~~L~i~~c~~l~~l~--------i~~p  223 (285)
                      ++   |.++++.|..|++|.|++|.--..              ..-..+.++|+.+..+.-. +..-.        -..|
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHP  185 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhcc
Confidence            66   788999999999999999952110              1112234667777655332 21111        1346


Q ss_pred             CceEEEEeccee--------eeeecCCCceEEEEEEccccchh-hhHHhhhhcCCCcceEEEEEEEe
Q 023267          224 NLVSFEFSAGEL--------IVSFKHVPSLVEMSIEGDYCTYF-VYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       224 ~L~~l~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      .|+.+++.....        ...+..||+|+.|+|....++.. ...+.+.+...|+|+.|.++.|-
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence            677766543322        11244667777777765444322 34445555666666666665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=3.5e-06  Score=69.90  Aligned_cols=144  Identities=23%  Similarity=0.197  Sum_probs=88.8

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhc-CCccceeecccCCC-cce--E-
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCY-CPLLEVLTLKGAEK-LIR--I-  195 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~-cp~Le~L~L~~c~~-~~~--~-  195 (285)
                      .|++++.+.++.+.+..      ..++ -+.+|..|..|+|++|....+....++.. -+.|..|+|+||.. +..  + 
T Consensus       234 ~~L~~lnlsm~sG~t~n------~~~l-l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~  306 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTEN------ALQL-LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS  306 (419)
T ss_pred             ccceeeccccccccchh------HHHH-HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence            68888888877654211      1111 12467888888998888555555554443 48888888888753 221  1 


Q ss_pred             EEeCCCCceeEEEEecCCCCCeE----EEeCCCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhh
Q 023267          196 RVSGPSLKLKYLELRDLPNLSNL----EINAPNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFS  266 (285)
Q Consensus       196 ~i~~~~~~L~~L~i~~c~~l~~l----~i~~p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll  266 (285)
                      .+...||.+.+|++++|..++.-    ...-|.|+++.++.+..     -+.+.+.|.|.-|++.+...+-.+.-+   .
T Consensus       307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~---~  383 (419)
T KOG2120|consen  307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELL---K  383 (419)
T ss_pred             HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHH---H
Confidence            22346788888888888655431    11467888888776543     355778888888888874332223333   3


Q ss_pred             cCCCcceE
Q 023267          267 SFLPQLRT  274 (285)
Q Consensus       267 ~~~~~L~~  274 (285)
                      ..+|+++.
T Consensus       384 e~~~~lki  391 (419)
T KOG2120|consen  384 EMLSHLKI  391 (419)
T ss_pred             HhCccccc
Confidence            34555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.75  E-value=1.1e-05  Score=69.67  Aligned_cols=126  Identities=18%  Similarity=0.236  Sum_probs=83.0

Q ss_pred             CCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceE---EEeCCCCceeEEEEecCCCCCeEEE------
Q 023267          151 SSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRI---RVSGPSLKLKYLELRDLPNLSNLEI------  220 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~c~~l~~l~i------  220 (285)
                      ..+++|+.|-+..+. |++..+..+..+||.||.|++.+|....+-   ..+..+++|+.|+++.|.....-.+      
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            356788888888887 888888888888888888888887654432   3344567788888887753322211      


Q ss_pred             --eCCCceEEEEecceee-----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEE
Q 023267          221 --NAPNLVSFEFSAGELI-----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKL  277 (285)
Q Consensus       221 --~~p~L~~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L  277 (285)
                        ..-.|+.+.+.+....     --+..|++|+.+.+.. +..+...++..+.+.+|++++..+
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~-~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID-CQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeec-hhhhhhhhhHHHHhhCccceehhh
Confidence              2344555556554431     1234688888877764 334556777888888998887654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.54  E-value=2.8e-06  Score=77.43  Aligned_cols=120  Identities=24%  Similarity=0.278  Sum_probs=78.9

Q ss_pred             CCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcce---EEEeCCCCceeEEEEecCCCCCe-----EEEe
Q 023267          151 SSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIR---IRVSGPSLKLKYLELRDLPNLSN-----LEIN  221 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~---~~i~~~~~~L~~L~i~~c~~l~~-----l~i~  221 (285)
                      ..|++|+.|++.++. ++|.++..+...||.||.|.+.+|..+++   ..|...++.|++|.+.+|..+..     +...
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~  319 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN  319 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence            457888999998888 88888888888899999999888876554   34455677788999988875422     2235


Q ss_pred             CCCceEEEEecce---------------------eeeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcc
Q 023267          222 APNLVSFEFSAGE---------------------LIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQL  272 (285)
Q Consensus       222 ~p~L~~l~~~~~~---------------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L  272 (285)
                      +|+|+.+.+.+..                     ....+.+++.|+.+.+....  .........+.+||+|
T Consensus       320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG--ISDLGLELSLRGCPNL  389 (482)
T ss_pred             CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh--ccCcchHHHhcCCccc
Confidence            6666665432211                     12334467777777776533  2222334556777776

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.49  E-value=0.00015  Score=37.41  Aligned_cols=25  Identities=44%  Similarity=0.591  Sum_probs=22.6

Q ss_pred             CccEEEeeeEEeChh-HHHHHHhcCC
Q 023267          155 SLVSLRLIDVDIPEE-VLHYLLCYCP  179 (285)
Q Consensus       155 ~L~~L~L~~~~i~~~-~l~~ll~~cp  179 (285)
                      +||+|+|.+|.|.++ .++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999998777 4999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.49  E-value=2e-05  Score=71.85  Aligned_cols=126  Identities=28%  Similarity=0.342  Sum_probs=92.7

Q ss_pred             CCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccC-CCcc-----eEEEeCCCCceeEEEEecCCCCCeEEE----
Q 023267          152 SFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGA-EKLI-----RIRVSGPSLKLKYLELRDLPNLSNLEI----  220 (285)
Q Consensus       152 ~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c-~~~~-----~~~i~~~~~~L~~L~i~~c~~l~~l~i----  220 (285)
                      .+|+|+.|.+.++. +++.++..+...||.|++|++.+| ....     ...+...+.+++.|.+.+|..+....+    
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            48999999999997 887779999999999999999983 3221     123555667889999999875544443    


Q ss_pred             -eCCCceEEEEeccee------eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          221 -NAPNLVSFEFSAGEL------IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       221 -~~p~L~~l~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                       .||+|+.+.+.++..      ......+|+|++++|.. +....+..+..+..+|++++.|.+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~-c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG-CHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec-CccchHHHHHHHHHhCcchhhhhhh
Confidence             489999998654442      22344689999999986 3334556677778889998887643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=8.6e-05  Score=64.73  Aligned_cols=152  Identities=20%  Similarity=0.202  Sum_probs=93.2

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe-C
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS-G  199 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~-~  199 (285)
                      +++++|.++-..        +.+|.+--.-..++.||.|.|.+|-++-.++..++..||.|+.|.|..-.++..-... .
T Consensus       172 p~Le~LNls~Nr--------l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~  243 (505)
T KOG3207|consen  172 PSLENLNLSSNR--------LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK  243 (505)
T ss_pred             ccchhccccccc--------ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh
Confidence            677777765332        3333322222367899999999999999999999999999999999876532211111 1


Q ss_pred             CCCceeEEEEecCCCC--C--eEEEeCCCceEEEEecceee----------eeecCCCceEEEEEEcccc-chhhhHHhh
Q 023267          200 PSLKLKYLELRDLPNL--S--NLEINAPNLVSFEFSAGELI----------VSFKHVPSLVEMSIEGDYC-TYFVYTLHQ  264 (285)
Q Consensus       200 ~~~~L~~L~i~~c~~l--~--~l~i~~p~L~~l~~~~~~~~----------~~~~~~~~L~~l~l~~~~~-~~~~~~~~~  264 (285)
                      -..+|+.|++++-.-+  .  ......|.|+.+.+......          ......|+|+.|++..... +|.  .+ .
T Consensus       244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~--sl-~  320 (505)
T KOG3207|consen  244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR--SL-N  320 (505)
T ss_pred             hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc--cc-c
Confidence            1235778888765422  1  22235678888777654321          1123468888888876543 231  11 1


Q ss_pred             hhcCCCcceEEEEEEEeee
Q 023267          265 FSSFLPQLRTLKLNLMAVS  283 (285)
Q Consensus       265 ll~~~~~L~~L~L~~~~~~  283 (285)
                      -+...++|++|.+...|..
T Consensus       321 ~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  321 HLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hhhccchhhhhhccccccc
Confidence            2355667777665555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=9.9e-06  Score=70.40  Aligned_cols=126  Identities=18%  Similarity=0.164  Sum_probs=78.0

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCC--CcceEEE
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAE--KLIRIRV  197 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~--~~~~~~i  197 (285)
                      +.++++.++.+.        ..++..--....||+++.|+|++--|+.=. +..|+...|+||.|+|+.-.  ....-..
T Consensus       121 kkL~~IsLdn~~--------V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~  192 (505)
T KOG3207|consen  121 KKLREISLDNYR--------VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT  192 (505)
T ss_pred             HhhhheeecCcc--------ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence            567777777554        222221122457999999999988776644 77889999999999998632  1111112


Q ss_pred             eCCCCceeEEEEecCC----CCCeEEEeCCCceEEEEeccee----eeeecCCCceEEEEEEccc
Q 023267          198 SGPSLKLKYLELRDLP----NLSNLEINAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       198 ~~~~~~L~~L~i~~c~----~l~~l~i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~  254 (285)
                      ....++++.|.+.+|.    ++..+....|+|+.|.+.+...    .....-...|++|+|++..
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence            2244579999999996    1234555678888877655421    1112224555666665443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.27  E-value=0.00025  Score=61.10  Aligned_cols=128  Identities=17%  Similarity=0.058  Sum_probs=66.7

Q ss_pred             CCccEEEeeeEEeChhH---HHHHHhcCCccceeecccCCCcce--EEEe---CCCCceeEEEEecCCCCCe--------
Q 023267          154 SSLVSLRLIDVDIPEEV---LHYLLCYCPLLEVLTLKGAEKLIR--IRVS---GPSLKLKYLELRDLPNLSN--------  217 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~---l~~ll~~cp~Le~L~L~~c~~~~~--~~i~---~~~~~L~~L~i~~c~~l~~--------  217 (285)
                      ++|+.|+|.++.++++.   +...+..++.|+.|++.+|.--..  ..+.   ...+.|+.|.+.+|. +..        
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~  215 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAE  215 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHH
Confidence            56666666666665433   233345556666666666532110  0010   112357777777764 221        


Q ss_pred             EEEeCCCceEEEEecceeee----ee-----cCCCceEEEEEEccccch-hhhHHhhhhcCCCcceEEEEEEEee
Q 023267          218 LEINAPNLVSFEFSAGELIV----SF-----KHVPSLVEMSIEGDYCTY-FVYTLHQFSSFLPQLRTLKLNLMAV  282 (285)
Q Consensus       218 l~i~~p~L~~l~~~~~~~~~----~~-----~~~~~L~~l~l~~~~~~~-~~~~~~~ll~~~~~L~~L~L~~~~~  282 (285)
                      ..-..|+|+.|.+.+....-    .+     ...+.|+++++.+..+.. ....+...+..+++|+.+++++..+
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            11235677777776643210    01     123677888877655432 1234445556667777777766543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.27  E-value=0.00042  Score=59.66  Aligned_cols=126  Identities=22%  Similarity=0.150  Sum_probs=81.9

Q ss_pred             CCccEEEeeeEEeChhHHHH---HHhcC-CccceeecccCCCcce--EE---EeCCCCceeEEEEecCCCCCe-----EE
Q 023267          154 SSLVSLRLIDVDIPEEVLHY---LLCYC-PLLEVLTLKGAEKLIR--IR---VSGPSLKLKYLELRDLPNLSN-----LE  219 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~---ll~~c-p~Le~L~L~~c~~~~~--~~---i~~~~~~L~~L~i~~c~~l~~-----l~  219 (285)
                      ++|++|++.++.+++.+...   .+..+ +.|++|++.+|.-...  ..   .-....+|+.|.+.+|. +..     +.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~  186 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALA  186 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHH
Confidence            67999999999988766543   34555 8999999999863211  01   11233468899998885 432     11


Q ss_pred             ---EeCCCceEEEEeccee--------eeeecCCCceEEEEEEccccchhhhHHhhhhc----CCCcceEEEEEEEee
Q 023267          220 ---INAPNLVSFEFSAGEL--------IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSS----FLPQLRTLKLNLMAV  282 (285)
Q Consensus       220 ---i~~p~L~~l~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~----~~~~L~~L~L~~~~~  282 (285)
                         ...++|+.|.+.+...        ...+..+++|+.+++++.....  ..+..+..    ..++|+.|+++.+.+
T Consensus       187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--AGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--HHHHHHHHHHhccCCCceEEEccCCCC
Confidence               1346899999876543        1234568899999998765432  22232222    358999999987654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=97.26  E-value=0.00028  Score=71.28  Aligned_cols=79  Identities=22%  Similarity=0.165  Sum_probs=42.1

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEEeCCCceEEEE
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEF  230 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~  230 (285)
                      ..+++|++|+|.++..- ..+..-+..+++|+.|++.+|..+..+.......+|+.|.+.+|..+..+.-..++|+.|.+
T Consensus       654 s~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L  732 (1153)
T PLN03210        654 SMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDL  732 (1153)
T ss_pred             ccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeec
Confidence            35667777777765411 11222345667777777777765554332223345677777777544433222334444444

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.24  E-value=6.8e-05  Score=58.62  Aligned_cols=120  Identities=25%  Similarity=0.282  Sum_probs=41.2

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--E--eCCCceE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--I--NAPNLVS  227 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i--~~p~L~~  227 (285)
                      ++-.+++|+|.+..|+.  ++.+-..+..|+.|+++++.- ..+.--...++|+.|.+.+=. +..+.  +  ..|+|+.
T Consensus        17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--ccchhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence            44578888888888754  555445678889999888632 111111124578888877543 44542  2  4789999


Q ss_pred             EEEecceee-----eeecCCCceEEEEEEccccchh-hhHHhhhhcCCCcceEEE
Q 023267          228 FEFSAGELI-----VSFKHVPSLVEMSIEGDYCTYF-VYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       228 l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~-~~~~~~ll~~~~~L~~L~  276 (285)
                      |.+.+....     ..+..+|+|+.+++.+..+... .| -..++..+|+|+.|+
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y-R~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY-RLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH-HHHHHHH-TT-SEET
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH-HHHHHHHcChhheeC
Confidence            988765431     2456789999999987554322 22 234567889999775

>PLN03210 Resistant to P

Probab=97.20  E-value=0.00019  Score=72.52  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=47.2

Q ss_pred             HhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEEeCCCceEEEEeccee---eeeecCCCceEEEEEE
Q 023267          175 LCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIE  251 (285)
Q Consensus       175 l~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~  251 (285)
                      +.++++|+.|+|.+|..+..+......++|+.|.+++|..+..+.-..++|+.|.+.+...   +..+..+++|+.+++.
T Consensus       798 i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~  877 (1153)
T PLN03210        798 IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMN  877 (1153)
T ss_pred             hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECC
Confidence            4567777777777776555433222345677777777766555443345677776655432   3345567777777776


Q ss_pred             c
Q 023267          252 G  252 (285)
Q Consensus       252 ~  252 (285)
                      +
T Consensus       878 ~  878 (1153)
T PLN03210        878 G  878 (1153)
T ss_pred             C
Confidence            5

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.03  E-value=0.00046  Score=68.73  Aligned_cols=147  Identities=18%  Similarity=0.125  Sum_probs=88.2

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE--EEe
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI--RVS  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--~i~  198 (285)
                      ++++.|++..+.-.      ..+|..++  ..+++|++|+|++..+++.. .  ....+.|++|+|.++.-...+  .+ 
T Consensus        93 ~~L~~L~Ls~n~~~------~~ip~~~~--~~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~-  160 (968)
T PLN00113         93 PYIQTINLSNNQLS------GPIPDDIF--TTSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNNMLSGEIPNDI-  160 (968)
T ss_pred             CCCCEEECCCCccC------CcCChHHh--ccCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCCcccccCChHH-
Confidence            67777776543211      13444332  25678888888877664321 1  134688888888876432111  12 


Q ss_pred             CCCCceeEEEEecCCCCCeE---EEeCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCc
Q 023267          199 GPSLKLKYLELRDLPNLSNL---EINAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQ  271 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l---~i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~  271 (285)
                      ....+|+.|.++++.-...+   ....++|++|.+.+...    +-.++++++|+.+++.......   .+...+..+++
T Consensus       161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---~~p~~l~~l~~  237 (968)
T PLN00113        161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG---EIPYEIGGLTS  237 (968)
T ss_pred             hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC---cCChhHhcCCC
Confidence            23457888888887522222   12567888888876542    3346678899999888655322   12223467889


Q ss_pred             ceEEEEEEEee
Q 023267          272 LRTLKLNLMAV  282 (285)
Q Consensus       272 L~~L~L~~~~~  282 (285)
                      |+.|+++.+..
T Consensus       238 L~~L~L~~n~l  248 (968)
T PLN00113        238 LNHLDLVYNNL  248 (968)
T ss_pred             CCEEECcCcee
Confidence            99999886654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=96.95  E-value=0.00064  Score=67.76  Aligned_cols=61  Identities=16%  Similarity=0.130  Sum_probs=27.6

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCC
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLP  213 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~  213 (285)
                      .+++|+.|+|++..+++. +......+|.|+.|++.+|...+.+.-.....+|+.|.+++|.
T Consensus       426 ~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~  486 (968)
T PLN00113        426 KLPLVYFLDISNNNLQGR-INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ  486 (968)
T ss_pred             cCCCCCEEECcCCcccCc-cChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence            345555555555544332 1122335666666666665422111100112345566665553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.89  E-value=0.00075  Score=64.07  Aligned_cols=145  Identities=19%  Similarity=0.244  Sum_probs=86.4

Q ss_pred             HhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe
Q 023267          119 VDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS  198 (285)
Q Consensus       119 ~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~  198 (285)
                      .+.++++|++........+ ....+      ..-||+|++|.+.++.+..++|..+...+|+|..|++++++ ++++.--
T Consensus       120 sr~nL~~LdI~G~~~~s~~-W~~ki------g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GI  191 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNG-WPKKI------GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGI  191 (699)
T ss_pred             HHHhhhhcCccccchhhcc-HHHHH------hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHH
Confidence            3468888887643211000 00111      23589999999999999888899999999999999999984 3333222


Q ss_pred             CCCCceeEEEEecCCCCCe----EE-EeCCCceEEEEeccee---e------eee-cCCCceEEEEEEccccchhhhHHh
Q 023267          199 GPSLKLKYLELRDLPNLSN----LE-INAPNLVSFEFSAGEL---I------VSF-KHVPSLVEMSIEGDYCTYFVYTLH  263 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~----l~-i~~p~L~~l~~~~~~~---~------~~~-~~~~~L~~l~l~~~~~~~~~~~~~  263 (285)
                      +..++|+.|.+.+-. ++.    .. ....+|+.|+++....   .      +.. ..+|.|+.++.+++..+.  ..+.
T Consensus       192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~--~~le  268 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE--EILE  268 (699)
T ss_pred             hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH--HHHH
Confidence            333334444444332 221    11 1467888888765432   1      011 137899999888766433  4444


Q ss_pred             hhhcCCCcceE
Q 023267          264 QFSSFLPQLRT  274 (285)
Q Consensus       264 ~ll~~~~~L~~  274 (285)
                      .++..-|+|+.
T Consensus       269 ~ll~sH~~L~~  279 (699)
T KOG3665|consen  269 ELLNSHPNLQQ  279 (699)
T ss_pred             HHHHhCccHhh
Confidence            55555555443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.48  E-value=0.00084  Score=56.74  Aligned_cols=36  Identities=31%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             CCcCCCCC----hHHHHHHHhcCChhhHhhhcccccchhh
Q 023267            2 DDRISKLP----DDILICILSRLTIEEAARASILSYRWRY   37 (285)
Q Consensus         2 ~D~is~LP----d~iL~~Ils~L~~~d~~~~s~vs~rW~~   37 (285)
                      .|.|+.||    |+|...|||||+..+++.|-.|||+|++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            47889999    9999999999999999999999999986

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.40  E-value=0.00084  Score=63.74  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=90.0

Q ss_pred             CCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcce--EEEeCCCCceeEEEEecCCCCCeEEE--eCCCce
Q 023267          152 SFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIR--IRVSGPSLKLKYLELRDLPNLSNLEI--NAPNLV  226 (285)
Q Consensus       152 ~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~--~~i~~~~~~L~~L~i~~c~~l~~l~i--~~p~L~  226 (285)
                      +-.+|++|++.+.. +..+-...+...+|.|+.|.+.+..-..+  ..+..+.|.|..|+|+++. +..+..  +.++|+
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq  198 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQ  198 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHH
Confidence            44689999999977 76666888899999999999998643322  2444567899999999995 555532  456777


Q ss_pred             EEEEecce-----eeeeecCCCceEEEEEEccccchh---hhHHhhhhcCCCcceEEEEEEEee
Q 023267          227 SFEFSAGE-----LIVSFKHVPSLVEMSIEGDYCTYF---VYTLHQFSSFLPQLRTLKLNLMAV  282 (285)
Q Consensus       227 ~l~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~ll~~~~~L~~L~L~~~~~  282 (285)
                      .|...+-.     .-..+-++.+|+.|+++.......   ..-..+.-..+|+|+.|+.+.+.+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence            66654432     223455789999999986543221   222334445699999999886654

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=95.93  E-value=0.0052  Score=53.67  Aligned_cols=38  Identities=34%  Similarity=0.453  Sum_probs=33.3

Q ss_pred             CCCcCCCCChHHHHHHHhcCCh-hhHhhhcccccchhhhc
Q 023267            1 MDDRISKLPDDILICILSRLTI-EEAARASILSYRWRYLW   39 (285)
Q Consensus         1 ~~D~is~LPd~iL~~Ils~L~~-~d~~~~s~vs~rW~~lw   39 (285)
                      |.| .+.||+|+|..|..+|+. -|++|.+.||+.||..-
T Consensus         1 ~~~-Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~   39 (373)
T PLN03215          1 MAD-WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSV   39 (373)
T ss_pred             CCC-hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhc
Confidence            555 688999999999999984 69999999999999743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.72  E-value=0.0033  Score=49.23  Aligned_cols=101  Identities=24%  Similarity=0.310  Sum_probs=32.8

Q ss_pred             HhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceeeee---e-cCCCceEEE
Q 023267          175 LCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELIVS---F-KHVPSLVEM  248 (285)
Q Consensus       175 l~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~~~---~-~~~~~L~~l  248 (285)
                      ..++-.+++|+|.++.--.--.+.....+|+.|.++++. +.++.  -..++|++|.+.+......   + ..+|+|+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            345667899999987421111233334578999999885 54443  1478999999987765321   2 358999999


Q ss_pred             EEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          249 SIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       249 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      .++....... .+ ...++.+|+|+.|+|.
T Consensus        94 ~L~~N~I~~l-~~-l~~L~~l~~L~~L~L~  121 (175)
T PF14580_consen   94 YLSNNKISDL-NE-LEPLSSLPKLRVLSLE  121 (175)
T ss_dssp             E-TTS---SC-CC-CGGGGG-TT--EEE-T
T ss_pred             ECcCCcCCCh-HH-hHHHHcCCCcceeecc
Confidence            9987665321 12 2446789999999875

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.18  E-value=0.007  Score=50.86  Aligned_cols=36  Identities=25%  Similarity=0.371  Sum_probs=30.8

Q ss_pred             CcCCCCChHHHHHHHhc-----CChhhHhhhcccccchhhh
Q 023267            3 DRISKLPDDILICILSR-----LTIEEAARASILSYRWRYL   38 (285)
Q Consensus         3 D~is~LPd~iL~~Ils~-----L~~~d~~~~s~vs~rW~~l   38 (285)
                      +.|+.||||||..||.+     ++.+++.++|.|||.|+..
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            45789999999999975     4569999999999999853

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.13  E-value=0.0027  Score=50.15  Aligned_cols=75  Identities=20%  Similarity=0.219  Sum_probs=45.3

Q ss_pred             ccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcce---EEEeCCCCceeEEEEecCCCCCeEEE----eCCCceEE
Q 023267          156 LVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIR---IRVSGPSLKLKYLELRDLPNLSNLEI----NAPNLVSF  228 (285)
Q Consensus       156 L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~---~~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l  228 (285)
                      ++.++-+++.|..++++. +.+++.++.|.+.+|..+.+   -.+....++|+.|++++|+.++.-.+    ..++|+.|
T Consensus       103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            455555566666666666 55677777777777766554   23444556677777777765554443    23555555


Q ss_pred             EEe
Q 023267          229 EFS  231 (285)
Q Consensus       229 ~~~  231 (285)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.04  E-value=0.011  Score=34.77  Aligned_cols=35  Identities=31%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCC
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAE  190 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~  190 (285)
                      ++|++|+|.+..|++  +...+..||+|+.|++.++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578999999888864  66557899999999999873

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.65  E-value=0.014  Score=36.99  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=18.1

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c  189 (285)
                      ++++|++|++++..+..-. ...+.++|+|++|++.++
T Consensus        23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred             CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence            4556666666555442211 112445566666665554

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.63  E-value=0.017  Score=29.70  Aligned_cols=21  Identities=33%  Similarity=0.376  Sum_probs=10.4

Q ss_pred             CCccEEEeeeEE-eChhHHHHH
Q 023267          154 SSLVSLRLIDVD-IPEEVLHYL  174 (285)
Q Consensus       154 ~~L~~L~L~~~~-i~~~~l~~l  174 (285)
                      |+|++|+|.+|. ++|.++..+
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            445555555554 555554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=94.53  E-value=0.0017  Score=59.08  Aligned_cols=54  Identities=26%  Similarity=0.380  Sum_probs=35.8

Q ss_pred             CCCceEEEEeccee-------eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          222 APNLVSFEFSAGEL-------IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       222 ~p~L~~l~~~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      ..+|+.|++.....       ...+.+++.|++|.+.+.....+.   .+.+.++++||+|+|.
T Consensus       364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~---krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP---KRAFSGLEALEHLDLG  424 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc---hhhhccCcccceecCC
Confidence            45666666654433       223457899999999987764331   2335788999999886

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.51  E-value=0.018  Score=45.60  Aligned_cols=64  Identities=27%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             CCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceEEEeC--CCCceeEEEEecCC
Q 023267          150 TSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSG--PSLKLKYLELRDLP  213 (285)
Q Consensus       150 ~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~--~~~~L~~L~i~~c~  213 (285)
                      +..++.++.|.+.+|. ++|..++.+-...|+||.|+|++|..+++-.+..  ..++|+.|.+.+-+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            4578899999999999 9999999988889999999999999776633332  33456666666554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.48  E-value=0.02  Score=29.37  Aligned_cols=18  Identities=33%  Similarity=0.624  Sum_probs=15.4

Q ss_pred             CCccceeecccCCCcceE
Q 023267          178 CPLLEVLTLKGAEKLIRI  195 (285)
Q Consensus       178 cp~Le~L~L~~c~~~~~~  195 (285)
                      ||+|++|+|.+|..+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            899999999999877663

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.41  E-value=0.011  Score=37.35  Aligned_cols=54  Identities=33%  Similarity=0.460  Sum_probs=28.5

Q ss_pred             CCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          223 PNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       223 p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      |+|++|.+.+....    -.+.++++|+.++++........   ...+..+++|+.|+++.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~---~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP---PDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE---TTTTTTSTTESEEEETS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC---HHHHcCCCCCCEEeCcC
Confidence            45555555544321    23455677777777654433221   12356677777776654

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.28  E-value=0.015  Score=48.24  Aligned_cols=91  Identities=13%  Similarity=0.119  Sum_probs=58.0

Q ss_pred             CceEEEEeeCCCcccHHHHHHHHHh--CCceEEEEEecCCCCCCCceeecCccc----cCCCCCCCccEEEeeeEEeChh
Q 023267           96 LQQLRICYPVNSDYDVDSWVQFAVD--KRVQRLELDFSESKTEGHELHTFSPYF----KTTSSFSSLVSLRLIDVDIPEE  169 (285)
Q Consensus        96 l~~l~l~~~~~~~~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~~~~p~~~----~~~~~~~~L~~L~L~~~~i~~~  169 (285)
                      +..+.++....+ .....|+...++  ++++...+.   ....+...-.+|..+    ..+..||.|+..+|+.-.|+..
T Consensus        32 ~~evdLSGNtig-tEA~e~l~~~ia~~~~L~vvnfs---d~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          32 LVEVDLSGNTIG-TEAMEELCNVIANVRNLRVVNFS---DAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             eeEEeccCCccc-HHHHHHHHHHHhhhcceeEeehh---hhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            556666655443 456789888775  344444442   111111111122211    1245799999999999998765


Q ss_pred             H---HHHHHhcCCccceeecccCC
Q 023267          170 V---LHYLLCYCPLLEVLTLKGAE  190 (285)
Q Consensus       170 ~---l~~ll~~cp~Le~L~L~~c~  190 (285)
                      .   +..+++....|++|.+++|.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCC
Confidence            4   78899999999999999984

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.87  E-value=0.044  Score=48.64  Aligned_cols=130  Identities=15%  Similarity=0.210  Sum_probs=73.4

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceEEEeC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSG  199 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~  199 (285)
                      ++.+.|.+..+.       .-.+|. +     -++|++|.+.++. +  ..+...+  .+.|+.|.+.+|..+..  +. 
T Consensus        52 ~~l~~L~Is~c~-------L~sLP~-L-----P~sLtsL~Lsnc~nL--tsLP~~L--P~nLe~L~Ls~Cs~L~s--LP-  111 (426)
T PRK15386         52 RASGRLYIKDCD-------IESLPV-L-----PNELTEITIENCNNL--TTLPGSI--PEGLEKLTVCHCPEISG--LP-  111 (426)
T ss_pred             cCCCEEEeCCCC-------CcccCC-C-----CCCCcEEEccCCCCc--ccCCchh--hhhhhheEccCcccccc--cc-
Confidence            678888887542       234452 1     1469999998864 2  1111112  36899999999975542  22 


Q ss_pred             CCCceeEEEEecCCCCCeEEEeCCCceEEEEecceee--eeec--CCCceEEEEEEccccchhhhHHhhhhcCCCcceEE
Q 023267          200 PSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELI--VSFK--HVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTL  275 (285)
Q Consensus       200 ~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~~--~~~~--~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L  275 (285)
                        ..|+.|.+.+ .....+.---++|+.|.+.+....  ..+.  -.++|+.|.+.+.....   ....++   .+|+.|
T Consensus       112 --~sLe~L~L~~-n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~---LP~~LP---~SLk~L  182 (426)
T PRK15386        112 --ESVRSLEIKG-SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII---LPEKLP---ESLQSI  182 (426)
T ss_pred             --cccceEEeCC-CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc---Cccccc---ccCcEE
Confidence              3577787753 333444444567888887543211  1111  23689999998633211   111122   467777


Q ss_pred             EEEE
Q 023267          276 KLNL  279 (285)
Q Consensus       276 ~L~~  279 (285)
                      +++.
T Consensus       183 ~ls~  186 (426)
T PRK15386        183 TLHI  186 (426)
T ss_pred             Eecc
Confidence            7653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=93.48  E-value=0.042  Score=50.43  Aligned_cols=145  Identities=19%  Similarity=0.252  Sum_probs=73.1

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC--CCcceEEEe
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA--EKLIRIRVS  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c--~~~~~~~i~  198 (285)
                      +|++++.+....       .-.+|.-   .....+|+.|.|.+-.|+.-.-++ ++.-|.||.|+|+.-  ..+..-...
T Consensus       102 ~nLq~v~l~~N~-------Lt~IP~f---~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp  170 (873)
T KOG4194|consen  102 PNLQEVNLNKNE-------LTRIPRF---GHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFP  170 (873)
T ss_pred             Ccceeeeeccch-------hhhcccc---cccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCC
Confidence            788888876433       1233331   112346999999887765433333 455688888888753  111111112


Q ss_pred             CCCCceeEEEEecCCCCCeEEE----------------------------eCCCceEEEEecceee----eeecCCCceE
Q 023267          199 GPSLKLKYLELRDLPNLSNLEI----------------------------NAPNLVSFEFSAGELI----VSFKHVPSLV  246 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l~i----------------------------~~p~L~~l~~~~~~~~----~~~~~~~~L~  246 (285)
                      + ...+++|.+++-. ++.+..                            ..|+|+.|.+.....+    ..+.+.++|+
T Consensus       171 ~-~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~  248 (873)
T KOG4194|consen  171 A-KVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ  248 (873)
T ss_pred             C-CCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence            1 2356777665432 222221                            2344444444433322    1233455555


Q ss_pred             EEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          247 EMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       247 ~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      .+.+...++.-.++   ..+-.+.++++|+|....
T Consensus       249 nlklqrN~I~kL~D---G~Fy~l~kme~l~L~~N~  280 (873)
T KOG4194|consen  249 NLKLQRNDISKLDD---GAFYGLEKMEHLNLETNR  280 (873)
T ss_pred             hhhhhhcCcccccC---cceeeecccceeecccch
Confidence            55555433322211   234567788888877544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=92.93  E-value=0.16  Score=49.22  Aligned_cols=30  Identities=23%  Similarity=0.222  Sum_probs=16.0

Q ss_pred             ceeEEEEecCCCCCeEEEeCCCceEEEEecc
Q 023267          203 KLKYLELRDLPNLSNLEINAPNLVSFEFSAG  233 (285)
Q Consensus       203 ~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~  233 (285)
                      .|+.|.+.++. +..+....|+|+.|.+++.
T Consensus       283 ~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N  312 (788)
T PRK15387        283 GLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN  312 (788)
T ss_pred             hcCEEECcCCc-cccccccccccceeECCCC
Confidence            35555555553 4444334466777766554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=92.30  E-value=0.052  Score=50.25  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=34.6

Q ss_pred             CCcCCCCChHHHHHHHhcCChhhHhhhcccccchhhh
Q 023267            2 DDRISKLPDDILICILSRLTIEEAARASILSYRWRYL   38 (285)
Q Consensus         2 ~D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~l   38 (285)
                      .|.++.||-|+..+||++|+.+++++++++|+.|+.+
T Consensus       105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            3789999999999999999999999999999999863

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.66  E-value=0.054  Score=44.57  Aligned_cols=119  Identities=24%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             ccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecC--C---CCCeEEEeCCCceEEEE
Q 023267          156 LVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDL--P---NLSNLEINAPNLVSFEF  230 (285)
Q Consensus       156 L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c--~---~l~~l~i~~p~L~~l~~  230 (285)
                      .+.+.+.++.-....+..+....-.|+.|.+.+|...+..... ..++|+.|.++.-  .   .+.-+...+|+|+++.+
T Consensus        20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l   98 (260)
T KOG2739|consen   20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL   98 (260)
T ss_pred             hhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence            3344444333333334444445555666665555322221111 2346677766543  1   12222335688888888


Q ss_pred             ecceeee--e---ecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEE
Q 023267          231 SAGELIV--S---FKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTL  275 (285)
Q Consensus       231 ~~~~~~~--~---~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L  275 (285)
                      ++.....  .   +...++|..+.+..+.....+.--.+++.-+|+|+-|
T Consensus        99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~L  148 (260)
T KOG2739|consen   99 SGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYL  148 (260)
T ss_pred             cCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccc
Confidence            7765431  1   2235556666666543322222223344445555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=90.62  E-value=0.28  Score=47.48  Aligned_cols=10  Identities=30%  Similarity=0.484  Sum_probs=4.8

Q ss_pred             Cccceeeccc
Q 023267          179 PLLEVLTLKG  188 (285)
Q Consensus       179 p~Le~L~L~~  188 (285)
                      |.|+.|++++
T Consensus       302 ~~L~~LdLS~  311 (788)
T PRK15387        302 PGLQELSVSD  311 (788)
T ss_pred             cccceeECCC
Confidence            4455555544

>PF13013 F-box-like_2: F-box-like domain

Probab=89.99  E-value=0.18  Score=36.06  Aligned_cols=29  Identities=17%  Similarity=0.037  Sum_probs=26.2

Q ss_pred             CCCCChHHHHHHHhcCChhhHhhhccccc
Q 023267            5 ISKLPDDILICILSRLTIEEAARASILSY   33 (285)
Q Consensus         5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~   33 (285)
                      +.+||+||+..|+.+-...+.......|+
T Consensus        22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   22 LLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            56899999999999999999988888876

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.65  E-value=0.12  Score=25.79  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=13.6

Q ss_pred             CCCccEEEeeeEEeChhHHHHH
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYL  174 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~l  174 (285)
                      +++|++|+|++..|++++...|
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3677777777777777776654

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=84.64  E-value=0.54  Score=45.58  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=15.1

Q ss_pred             CceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          243 PSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       243 ~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      ++|+.|+++.........   .+   .++|+.|+|+.+
T Consensus       346 ~sL~~L~Ls~N~L~~LP~---~l---p~~L~~LdLs~N  377 (754)
T PRK15370        346 PELQVLDVSKNQITVLPE---TL---PPTITTLDVSRN  377 (754)
T ss_pred             CcccEEECCCCCCCcCCh---hh---cCCcCEEECCCC
Confidence            466666666544321111   11   246666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.32  E-value=0.2  Score=42.31  Aligned_cols=100  Identities=18%  Similarity=0.151  Sum_probs=56.8

Q ss_pred             CCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCC--cce-EEEeCCCCceeEEEEecCC---CCCeEEEeCCCce
Q 023267          154 SSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEK--LIR-IRVSGPSLKLKYLELRDLP---NLSNLEINAPNLV  226 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~--~~~-~~i~~~~~~L~~L~i~~c~---~l~~l~i~~p~L~  226 (285)
                      ..++-|.+-++.|...+ +..+.+.|..+++|+|.+-.-  -.+ ..|-...|+++.|.++.-+   .++.+.+-..+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            34556667777766555 666677777777777765311  011 1222344566666665322   1222223445778


Q ss_pred             EEEEecceee-----eeecCCCceEEEEEEcc
Q 023267          227 SFEFSAGELI-----VSFKHVPSLVEMSIEGD  253 (285)
Q Consensus       227 ~l~~~~~~~~-----~~~~~~~~L~~l~l~~~  253 (285)
                      ++-+.|....     ..+...|.+++++++..
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            8888776643     23446777788777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=84.29  E-value=0.57  Score=27.41  Aligned_cols=14  Identities=14%  Similarity=0.541  Sum_probs=6.8

Q ss_pred             ecCCCceEEEEEEc
Q 023267          239 FKHVPSLVEMSIEG  252 (285)
Q Consensus       239 ~~~~~~L~~l~l~~  252 (285)
                      +.++++|+.+++++
T Consensus        20 l~~l~~L~~L~l~~   33 (44)
T PF12799_consen   20 LSNLPNLETLNLSN   33 (44)
T ss_dssp             GTTCTTSSEEEETS
T ss_pred             HhCCCCCCEEEecC
Confidence            34455555555544

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.70  E-value=0.76  Score=39.00  Aligned_cols=81  Identities=22%  Similarity=0.215  Sum_probs=53.4

Q ss_pred             CCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCCcceEE-EeCCCCceeEEEEecCCCCC-----eEEEeCCC
Q 023267          152 SFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEKLIRIR-VSGPSLKLKYLELRDLPNLS-----NLEINAPN  224 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~c~~l~-----~l~i~~p~  224 (285)
                      .+..++.|+|.+-.+++=+ +.+|+..-|.|+.|+|+.-.--..+. ...+...|+.|.+.+.. +.     ...-+.|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcchh
Confidence            5678888999888888755 88899999999999998643222222 22455567788777653 22     22225677


Q ss_pred             ceEEEEecc
Q 023267          225 LVSFEFSAG  233 (285)
Q Consensus       225 L~~l~~~~~  233 (285)
                      +..|++++.
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            777766544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=82.22  E-value=0.36  Score=46.80  Aligned_cols=33  Identities=33%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             CCceeEEEEecCCCCCeEEE----eCCCceEEEEecce
Q 023267          201 SLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGE  234 (285)
Q Consensus       201 ~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~  234 (285)
                      .++|+.++++ |.++..+.+    ..|+|++|+++|..
T Consensus       451 l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  451 LPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence            3456666665 545555544    22678888777765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=81.59  E-value=0.077  Score=51.19  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=16.1

Q ss_pred             CCCceEEEEecceee-ee--e-cCCCceEEEEEEccc
Q 023267          222 APNLVSFEFSAGELI-VS--F-KHVPSLVEMSIEGDY  254 (285)
Q Consensus       222 ~p~L~~l~~~~~~~~-~~--~-~~~~~L~~l~l~~~~  254 (285)
                      .|.|+.++++..... ..  . ...|+|+.+++++..
T Consensus       451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            455666665544331 11  1 112667777776643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=81.45  E-value=3.1  Score=36.03  Aligned_cols=88  Identities=22%  Similarity=0.185  Sum_probs=57.4

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhH---HHHHHhcCCccceeecccCCCcce--E
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEV---LHYLLCYCPLLEVLTLKGAEKLIR--I  195 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~---l~~ll~~cp~Le~L~L~~c~~~~~--~  195 (285)
                      ++++++.+....-.+.+.  ..+..   .+..||+|+.|+|..-.|+.++   +...+...|.|++|++++|.--..  +
T Consensus       185 ~~leevr~~qN~I~~eG~--~al~e---al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~  259 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGV--TALAE---ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI  259 (382)
T ss_pred             cccceEEEecccccCchh--HHHHH---HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence            689988886554332221  11111   2356899999999988887766   566678889999999999852211  1


Q ss_pred             ----EEeCCCCceeEEEEecCC
Q 023267          196 ----RVSGPSLKLKYLELRDLP  213 (285)
Q Consensus       196 ----~i~~~~~~L~~L~i~~c~  213 (285)
                          .+....|.|+.|.+.++.
T Consensus       260 a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  260 AFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHHHHhccCCCCceeccCcch
Confidence                222335678888888774

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=81.06  E-value=0.55  Score=38.77  Aligned_cols=80  Identities=25%  Similarity=0.205  Sum_probs=50.3

Q ss_pred             CCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCC--cceEEEeCCCCceeEEEEecCCCCC------eEEEeC
Q 023267          152 SFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEK--LIRIRVSGPSLKLKYLELRDLPNLS------NLEINA  222 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~--~~~~~i~~~~~~L~~L~i~~c~~l~------~l~i~~  222 (285)
                      .+|+||.|.++.-.+...+ +..++..||+|++|++++-..  +.++.=......|+.|....|+...      ++..-.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            4689999999877433333 777788889999999987532  2222222233446777788886332      222346


Q ss_pred             CCceEEEEe
Q 023267          223 PNLVSFEFS  231 (285)
Q Consensus       223 p~L~~l~~~  231 (285)
                      |+|+++.-.
T Consensus       143 ~~L~~LD~~  151 (260)
T KOG2739|consen  143 PSLKYLDGC  151 (260)
T ss_pred             hhhcccccc
Confidence            777777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-05
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 48/240 (20%), Positives = 76/240 (31%), Gaps = 39/240 (16%)

Query: 5   ISKLPDDILICILSRLTIEEAARASILSYRWR------YLWRFFTGSLDFVDPYKIRRLA 58
              LPD++L+ I S L + E  + S +  RW        LW+    +   + P    RL 
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL 68

Query: 59  ILSDPYYKCEDNYFIRVKRRNFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFA 118
                         +   R     +  P+        +Q + +   V     +   +   
Sbjct: 69  SQG-----------VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117

Query: 119 VDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEVLHYLLCY 177
              ++Q L L+                   T +  S+LV L L       E  L  LL  
Sbjct: 118 --SKLQNLSLEGLRLSDPI---------VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166

Query: 178 CPLLEVLTLKGAEKL----IRIRVSGPSLKLKYLELRDLPN------LSNLEINAPNLVS 227
           C  L+ L L          +++ V+  S  +  L L           LS L    PNLV 
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 52/326 (15%), Positives = 107/326 (32%), Gaps = 59/326 (18%)

Query: 3   DRISKLPDDILICILSRLTIEEA-ARASILSYRWRYLWRFFTGSLDFVDPY--------- 52
                 P+++L  + S + +++     S++   W  + R+    +   + Y         
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR 63

Query: 53  ---KIRRLAI----------LSDPYYKCEDNYFIRVKRRNFINLV----------DPILG 89
              K+R + +          L    +      +I     ++  L           D  L 
Sbjct: 64  RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123

Query: 90  LLQT--KSLQQLRICYPVN-SDYDVDSWVQFAVDKRVQRLE-LDFSESKTEGHELHTFSP 145
           L+    K+ + L +      S   +      A+    + L+ LD  ES  +    H  S 
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGL-----AAIAATCRNLKELDLRESDVDDVSGHWLSH 178

Query: 146 YFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR-VSGPSLKL 204
           +  T +S  SL ++  +  ++    L  L+  CP L+ L L  A  L ++  +   + +L
Sbjct: 179 FPDTYTSLVSL-NISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQL 237

Query: 205 KYLELRDLPN------LSNLEINAPNLVSFEFSAGELIVS-------FKHVPSLVEMSIE 251
           + L              S L +           +G            +     L  +++ 
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297

Query: 252 GDYCTYFVYTLHQFSSFLPQLRTLKL 277
             Y T   Y L +     P+L+ L +
Sbjct: 298 --YATVQSYDLVKLLCQCPKLQRLWV 321

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 45/322 (13%), Positives = 91/322 (28%), Gaps = 58/322 (18%)

Query: 5   ISKLPDDILICILSRLT-IEEAARASILSYRWRYLWRFFTGSLDFVDPYKI--RRLA--- 58
                DD++  +++ +T  ++   AS++  RW  +       +     Y     RL+   
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 59  --ILSDPYYKCEDNYFIRVKRRNFINLVDPILGLL--QTKSLQQLRICYPVNSDYDVDSW 114
             + S             +   N+   V P +  +    + L+ +     + SD D+D  
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 115 VQFAVDKRVQRL------------------------ELDFSESK---TEGHELHTFSPYF 147
            +      ++ L                         L   ES     +G  LH  +   
Sbjct: 133 AKARA-DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA--- 188

Query: 148 KTTSSFSSLVSLRLIDVDIPE---EVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKL 204
                 +SL  L     +  +   + L  +   C  L  + +   E L  +     +  L
Sbjct: 189 ---QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANL 245

Query: 205 KYLELRDLPNLSNLEINAPNLVS---------FEFSAGELIVSFKHVPSLVEMSIEGDYC 255
           +      L     +     NLV                E+ + F     + ++ +   Y 
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL--YA 303

Query: 256 TYFVYTLHQFSSFLPQLRTLKL 277
                         P L  L+ 
Sbjct: 304 LLETEDHCTLIQKCPNLEVLET 325

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 5  ISKLPDDILICILSRLTIEEAARASILSYRWRY------LWR 40
             LPD++L+ I S L + E  + S +  RW        LW+
Sbjct: 9  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.01
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.34
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.34
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.16
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.1
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.99
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.95
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.89
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.87
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.86
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.78
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.74
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.7
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.63
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.62
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.59
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.58
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.57
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.5
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.49
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.49
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.49
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.48
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.47
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.44
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.41
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.37
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.36
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.34
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.34
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.33
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.31
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.2
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.2
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.17
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.12
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.07
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.03
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.02
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.02
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.0
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.0
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.96
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.96
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.91
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	96.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	96.68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	96.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	96.5
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	96.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	96.26
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.23
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	95.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	95.71
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	95.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	95.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	95.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	95.3
3e6j_A	229	Variable lymphocyte receptor diversity region; var	95.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.15
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	95.12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	95.08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	95.05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	94.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.46
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	93.89
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	93.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	93.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	93.36
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	93.13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	92.84
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	92.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	89.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	87.25
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	86.24
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	84.86
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	84.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	83.84
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	83.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	80.62

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=4.5e-19  Score=164.08  Aligned_cols=151  Identities=13%  Similarity=0.206  Sum_probs=90.3

Q ss_pred             CCcCCCCChHHHHHHHhcCC-hhhHhhhcccccchhhhccccCCceeecCccchhcccccCCCcccccchhhhhhhhhhH
Q 023267            2 DDRISKLPDDILICILSRLT-IEEAARASILSYRWRYLWRFFTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNF   80 (285)
Q Consensus         2 ~D~is~LPd~iL~~Ils~L~-~~d~~~~s~vs~rW~~lw~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (285)
                      +|+++.||||||.+||+||+ .+|+++++.|||||+++.......+++...+..                          
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--------------------------   56 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--------------------------   56 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--------------------------
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--------------------------
Confidence            49999999999999999999 999999999999999873312334444332100                          


Q ss_pred             HHhHHHHHhccCCCCCceEEEEeeCCC----------cccHHHHHHHHHh--CCceEEEEEecCCCCCCCceeecCcccc
Q 023267           81 INLVDPILGLLQTKSLQQLRICYPVNS----------DYDVDSWVQFAVD--KRVQRLELDFSESKTEGHELHTFSPYFK  148 (285)
Q Consensus        81 ~~~v~~~L~~~~~~~l~~l~l~~~~~~----------~~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~~~~p~~~~  148 (285)
                        .....+...  +.++++.+......          ...+..|+.....  +++++|.+..+.-.      ...+..+ 
T Consensus        57 --~~~~~~~~~--~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~------~~~~~~l-  125 (594)
T 2p1m_B           57 --SPATVIRRF--PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT------DDCLELI-  125 (594)
T ss_dssp             --CHHHHHHHC--TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC------HHHHHHH-
T ss_pred             --CHHHHHhhC--CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc------HHHHHHH-
Confidence              001122222  24777887764311          0345567776654  68888888744211      0000111 


Q ss_pred             CCCCCCCccEEEeeeE-EeChhHHHHHHhcCCccceeecccCC
Q 023267          149 TTSSFSSLVSLRLIDV-DIPEEVLHYLLCYCPLLEVLTLKGAE  190 (285)
Q Consensus       149 ~~~~~~~L~~L~L~~~-~i~~~~l~~ll~~cp~Le~L~L~~c~  190 (285)
                       ...|++|++|+|.++ .+++.++..+..+||+|++|+|.+|.
T Consensus       126 -~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          126 -AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             -HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             -HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence             013678888888877 47777777777788888888887764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=7.7e-19  Score=151.35  Aligned_cols=232  Identities=19%  Similarity=0.209  Sum_probs=140.0

Q ss_pred             CcCCCCChHHHHHHHhcCChhhHhhhcccccchhhhccc--cCCceeecCccchhcccccCCCcccccchhhhhhhhhhH
Q 023267            3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLWRF--FTGSLDFVDPYKIRRLAILSDPYYKCEDNYFIRVKRRNF   80 (285)
Q Consensus         3 D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw~~--~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (285)
                      ..++.||||++.+||+||+.+|+++++.|||+|+++...  ....+++....+.                          
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~--------------------------   60 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH--------------------------   60 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC--------------------------
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC--------------------------
Confidence            357999999999999999999999999999999987320  1225665554211                          


Q ss_pred             HHhHHHHHhccCCCCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEE
Q 023267           81 INLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLR  160 (285)
Q Consensus        81 ~~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~  160 (285)
                      ...+.+.+.    +.++.+.+........ ...   ....++++++++..+.-.     ...+|..   ...+++|++|+
T Consensus        61 ~~~~~~~~~----~~l~~L~l~~n~l~~~-~~~---~~~~~~L~~L~L~~~~l~-----~~~~~~~---~~~~~~L~~L~  124 (336)
T 2ast_B           61 PDVTGRLLS----QGVIAFRCPRSFMDQP-LAE---HFSPFRVQHMDLSNSVIE-----VSTLHGI---LSQCSKLQNLS  124 (336)
T ss_dssp             HHHHHHHHH----TTCSEEECTTCEECSC-CCS---CCCCBCCCEEECTTCEEC-----HHHHHHH---HTTBCCCSEEE
T ss_pred             HHHHHhhhh----ccceEEEcCCcccccc-chh---hccCCCCCEEEccCCCcC-----HHHHHHH---HhhCCCCCEEe
Confidence            111222211    1345555432111000 000   001257777776533200     0002221   34678889999


Q ss_pred             eeeEEeChhHHHHHHhcCCccceeecccCCCcceE---EEeCCCCceeEEEEecCCCCCeE-----EEeCC-CceEEEEe
Q 023267          161 LIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI---RVSGPSLKLKYLELRDLPNLSNL-----EINAP-NLVSFEFS  231 (285)
Q Consensus       161 L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~c~~l~~l-----~i~~p-~L~~l~~~  231 (285)
                      |.++.+++..... ++.||+|++|+|.+|..++..   .+-...++|+.|.+.+|..+...     ....| +|++|.+.
T Consensus       125 L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          125 LEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             CTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             CcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            8888887766554 456889999999888655431   11223567888999888445532     12577 89999887


Q ss_pred             cce--e-----eeeecCCCceEEEEEEccc-cchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          232 AGE--L-----IVSFKHVPSLVEMSIEGDY-CTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       232 ~~~--~-----~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      +..  .     ...+..+++|+.+++++.. ...  .. ...+..+++|+.|+|+.+
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~-~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN--DC-FQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG--GG-GGGGGGCTTCCEEECTTC
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH--HH-HHHHhCCCCCCEeeCCCC
Confidence            763  1     2234568899999988654 221  12 223467789998888754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=1.1e-16  Score=147.92  Aligned_cols=34  Identities=18%  Similarity=0.333  Sum_probs=32.4

Q ss_pred             CCChHHHHHHHhcC-ChhhHhhhcccccchhhhcc
Q 023267            7 KLPDDILICILSRL-TIEEAARASILSYRWRYLWR   40 (285)
Q Consensus         7 ~LPd~iL~~Ils~L-~~~d~~~~s~vs~rW~~lw~   40 (285)
                      .||||+|.+||+|| +.+|+++++.|||+|++++.
T Consensus        15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~   49 (592)
T 3ogk_B           15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS   49 (592)
T ss_dssp             CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence            89999999999999 89999999999999999865

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.01  E-value=1.7e-10  Score=71.03  Aligned_cols=37  Identities=32%  Similarity=0.463  Sum_probs=33.2

Q ss_pred             CcCCCCChHHHHHHHhcCChhhHhhhcccccchhhhc
Q 023267            3 DRISKLPDDILICILSRLTIEEAARASILSYRWRYLW   39 (285)
Q Consensus         3 D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw   39 (285)
                      +.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            5689999999999999999999999999999999753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.48  E-value=9.7e-09  Score=79.22  Aligned_cols=103  Identities=14%  Similarity=0.062  Sum_probs=68.4

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE---eCC---CCceeEEEEecCCCCCeEEEeCCCceE
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV---SGP---SLKLKYLELRDLPNLSNLEINAPNLVS  227 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i---~~~---~~~L~~L~i~~c~~l~~l~i~~p~L~~  227 (285)
                      ..|++|+|+++.+++.++..+ .+|++|++|+|.+|..+++..+   ...   +++|++|++++|..++.-.+.      
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~------  133 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII------  133 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH------
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH------
Confidence            468999999999999888875 7899999999999987776433   221   346888888888765443331      


Q ss_pred             EEEecceeeeeecCCCceEEEEEEccc-cchhhhHHhhhhcCCCcce
Q 023267          228 FEFSAGELIVSFKHVPSLVEMSIEGDY-CTYFVYTLHQFSSFLPQLR  273 (285)
Q Consensus       228 l~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~  273 (285)
                                .+..+++|+.|+|.+.. .+........+-..+|+++
T Consensus       134 ----------~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          134 ----------ALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             ----------HGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             ----------HHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence                      13456777777777532 1222223445555667665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=5.7e-08  Score=74.89  Aligned_cols=88  Identities=18%  Similarity=0.190  Sum_probs=66.4

Q ss_pred             CceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhHHHHHHhc---CCccceeecccCCCcceEEE
Q 023267          122 RVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEVLHYLLCY---CPLLEVLTLKGAEKLIRIRV  197 (285)
Q Consensus       122 ~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~ll~~---cp~Le~L~L~~c~~~~~~~i  197 (285)
                      .+++|++..+.-.  +       ..+....+|++|++|+|++|. |+|.++..|...   |+.||+|+|++|..+++..+
T Consensus        62 ~L~~LDLs~~~It--d-------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           62 KIQAIDATDSCIM--S-------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CEEEEEEESCCCC--G-------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             eEeEEeCcCCCcc--H-------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            5788887755311  1       112223579999999999997 999999998763   89999999999998877332


Q ss_pred             e--CCCCceeEEEEecCCCCCeE
Q 023267          198 S--GPSLKLKYLELRDLPNLSNL  218 (285)
Q Consensus       198 ~--~~~~~L~~L~i~~c~~l~~l  218 (285)
                      .  +.+++|++|.+.+|+.++..
T Consensus       133 ~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTTCCCH
T ss_pred             HHHhcCCCCCEEECCCCCCCCch
Confidence            2  24688999999999877653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.34  E-value=1.6e-08  Score=86.53  Aligned_cols=125  Identities=27%  Similarity=0.309  Sum_probs=72.0

Q ss_pred             CCCCccEEEeeeE-EeChhHHHHHHhcCCccceeecccCCCcceE---EEeCCCC-ceeEEEEecCC-CCCe-----EEE
Q 023267          152 SFSSLVSLRLIDV-DIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI---RVSGPSL-KLKYLELRDLP-NLSN-----LEI  220 (285)
Q Consensus       152 ~~~~L~~L~L~~~-~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~---~i~~~~~-~L~~L~i~~c~-~l~~-----l~i  220 (285)
                      .+++|++|+|+++ .+++.++..++..||+|++|++.+|..+...   .+-...+ +|+.|.+.+|. .+..     +..
T Consensus       140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~  219 (336)
T 2ast_B          140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR  219 (336)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred             cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence            4677777777777 4776667777777777777777777444321   1112334 67777777774 2321     112


Q ss_pred             eCCCceEEEEecce-e----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          221 NAPNLVSFEFSAGE-L----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       221 ~~p~L~~l~~~~~~-~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      .+|+|++|.+.+.. .    ...+..+++|+.++++... ...+..+ ..+..+++|+.|+++
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETL-LELGEIPTLKTLQVF  280 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGG-GGGGGCTTCCEEECT
T ss_pred             hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHH-HHHhcCCCCCEEecc
Confidence            46777777776543 1    1234566777777776543 1222222 234557777777664

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.34  E-value=8.8e-08  Score=79.03  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=31.5

Q ss_pred             CCCCChHHHHHHHhcCChhhHhhhcccccchhh
Q 023267            5 ISKLPDDILICILSRLTIEEAARASILSYRWRY   37 (285)
Q Consensus         5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~   37 (285)
                      ++.||+||+.+|||||+++|+++++.|||+||.
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999996

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.31  E-value=3.2e-07  Score=76.40  Aligned_cols=36  Identities=25%  Similarity=0.636  Sum_probs=33.7

Q ss_pred             CcCCCCChHHHHHHHhcCChhhHh-hhcccccchhhh
Q 023267            3 DRISKLPDDILICILSRLTIEEAA-RASILSYRWRYL   38 (285)
Q Consensus         3 D~is~LPd~iL~~Ils~L~~~d~~-~~s~vs~rW~~l   38 (285)
                      ..+..||+|+|.+||++||+++++ +++.|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            367899999999999999999999 999999999975

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.23  E-value=1.4e-07  Score=72.42  Aligned_cols=126  Identities=23%  Similarity=0.178  Sum_probs=77.6

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCe-EE---EeCCCceEE
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSN-LE---INAPNLVSF  228 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~-l~---i~~p~L~~l  228 (285)
                      .++|++|+|.+..+++..+...+..+++|+.|++.+|. +..+..-...++|+.|.++++. +.. +.   -..|+|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEE
Confidence            46677777777766544444445667777777777764 2222112234567777777765 333 21   136788888


Q ss_pred             EEecceee-----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          229 EFSAGELI-----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       229 ~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      .+.+....     ..+..+++|+.+++++.............+..+++|+.|+++..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            87765431     24567899999999876543322211245688999999887653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.17  E-value=8.9e-07  Score=75.65  Aligned_cols=166  Identities=17%  Similarity=0.175  Sum_probs=98.7

Q ss_pred             CCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHH
Q 023267           94 KSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHY  173 (285)
Q Consensus        94 ~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~  173 (285)
                      ..++.+.+.......  +...+..  -++++.|.+..+.       ...+|..+   ..+++|++|+|++..++  .+..
T Consensus        81 ~~l~~L~L~~n~l~~--lp~~l~~--l~~L~~L~L~~n~-------l~~lp~~~---~~l~~L~~L~Ls~n~l~--~lp~  144 (328)
T 4fcg_A           81 PGRVALELRSVPLPQ--FPDQAFR--LSHLQHMTIDAAG-------LMELPDTM---QQFAGLETLTLARNPLR--ALPA  144 (328)
T ss_dssp             TTCCEEEEESSCCSS--CCSCGGG--GTTCSEEEEESSC-------CCCCCSCG---GGGTTCSEEEEESCCCC--CCCG
T ss_pred             cceeEEEccCCCchh--cChhhhh--CCCCCEEECCCCC-------ccchhHHH---hccCCCCEEECCCCccc--cCcH
Confidence            456777776543321  1111111  2577777776433       12345433   35788888888887765  2333


Q ss_pred             HHhcCCccceeecccCCCcceEE--Ee--------CCCCceeEEEEecCCCCCeEE---EeCCCceEEEEeccee---ee
Q 023267          174 LLCYCPLLEVLTLKGAEKLIRIR--VS--------GPSLKLKYLELRDLPNLSNLE---INAPNLVSFEFSAGEL---IV  237 (285)
Q Consensus       174 ll~~cp~Le~L~L~~c~~~~~~~--i~--------~~~~~L~~L~i~~c~~l~~l~---i~~p~L~~l~~~~~~~---~~  237 (285)
                      -+..++.|+.|+|.+|...+.+.  +.        ...++|+.|.+.++. +..+.   -..++|++|.+.+...   +.
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~  223 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGP  223 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCG
T ss_pred             HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCch
Confidence            46778888888888875443321  10        114568888888774 44332   1467888888876543   22


Q ss_pred             eecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          238 SFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       238 ~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      .+..+++|+.+++++.....   .+...+..+++|+.|+|+.
T Consensus       224 ~l~~l~~L~~L~Ls~n~~~~---~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          224 AIHHLPKLEELDLRGCTALR---NYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             GGGGCTTCCEEECTTCTTCC---BCCCCTTCCCCCCEEECTT
T ss_pred             hhccCCCCCEEECcCCcchh---hhHHHhcCCCCCCEEECCC
Confidence            45678888888887644321   1222356788888888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.16  E-value=4.2e-07  Score=83.69  Aligned_cols=128  Identities=17%  Similarity=0.133  Sum_probs=74.6

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeeccc---CCCcceE-------EEeCCCCceeEEEEecCCC-CCe----
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKG---AEKLIRI-------RVSGPSLKLKYLELRDLPN-LSN----  217 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~---c~~~~~~-------~i~~~~~~L~~L~i~~c~~-l~~----  217 (285)
                      |++|++|.+....+++..+..+...||+|++|++.+   |+.++..       .+...+++|+.|.+++|.+ +..    
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence            566666666444466666666555666666666653   3333221       0111245677777766542 111    


Q ss_pred             -EEEeCCCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEee
Q 023267          218 -LEINAPNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAV  282 (285)
Q Consensus       218 -l~i~~p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~~  282 (285)
                       +.-.+|+|++|.+.+...     ...+.++++|++++|.+..+  ....+..++..+++|+.|+|+.+.+
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF--SERAIAAAVTKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC--BHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC--cHHHHHHHHHhcCccCeeECcCCcC
Confidence             111367888888765533     22345678888888887553  3345555666788888888876553

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.10  E-value=5.9e-07  Score=79.82  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=34.8

Q ss_pred             CCcCCCCChHHHHHHHhcCChhhHhhhcccccchhhh
Q 023267            2 DDRISKLPDDILICILSRLTIEEAARASILSYRWRYL   38 (285)
Q Consensus         2 ~D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~l   38 (285)
                      .|.|+.||+|++.+||+||+.+|+++++.|||+|+++
T Consensus        12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (464)
T 3v7d_B           12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI   48 (464)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred             cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999999999999999999864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.07  E-value=7.3e-08  Score=72.46  Aligned_cols=123  Identities=27%  Similarity=0.194  Sum_probs=72.9

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCe-EE---EeCCCceEE
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSN-LE---INAPNLVSF  228 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~-l~---i~~p~L~~l  228 (285)
                      .++|++|++.+..++++.+...+..+++|+.|++.++. +..+..-...++|+.|.++++. +.. +.   -..|+|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEE
Confidence            35677777776666533344445666777777776653 2222111233466777777664 332 21   136778888


Q ss_pred             EEecceee-----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEE
Q 023267          229 EFSAGELI-----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKL  277 (285)
Q Consensus       229 ~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L  277 (285)
                      .+.+....     ..+..+++|+.+++++........-....+..+++|+.|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            77665431     34677899999999876543322211245678899998865

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.05  E-value=1.5e-06  Score=68.40  Aligned_cols=142  Identities=15%  Similarity=0.173  Sum_probs=92.7

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcc-eEEEeC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLI-RIRVSG  199 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~i~~  199 (285)
                      ++++++.+....-       -.+|    ....+++|++|++.+..+++-.   -+..+|+|++|++.++.-.. ....-+
T Consensus        44 ~~L~~L~l~~n~i-------~~l~----~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~  109 (197)
T 4ezg_A           44 NSLTYITLANINV-------TDLT----GIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLS  109 (197)
T ss_dssp             HTCCEEEEESSCC-------SCCT----TGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred             CCccEEeccCCCc-------cChH----HHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCccCcccChhhc
Confidence            5788888864321       2233    2346789999999988654432   36678999999998864321 112123


Q ss_pred             CCCceeEEEEecCCCCCe--EE--EeCCCceEEEEecce-e--eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcc
Q 023267          200 PSLKLKYLELRDLPNLSN--LE--INAPNLVSFEFSAGE-L--IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQL  272 (285)
Q Consensus       200 ~~~~L~~L~i~~c~~l~~--l~--i~~p~L~~l~~~~~~-~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L  272 (285)
                      ..++|+.|.++++. +..  ..  ...|+|+.|.+.+.. .  ...+..+++|+.++++........     .+..+++|
T Consensus       110 ~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-----~l~~l~~L  183 (197)
T 4ezg_A          110 GLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-----GIEDFPKL  183 (197)
T ss_dssp             TCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-----TGGGCSSC
T ss_pred             CCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-----HhccCCCC
Confidence            45678899988875 333  11  146889999887764 2  124677899999999876543211     35788999


Q ss_pred             eEEEEEEEee
Q 023267          273 RTLKLNLMAV  282 (285)
Q Consensus       273 ~~L~L~~~~~  282 (285)
                      +.|+++...+
T Consensus       184 ~~L~l~~N~i  193 (197)
T 4ezg_A          184 NQLYAFSQTI  193 (197)
T ss_dssp             CEEEECBC--
T ss_pred             CEEEeeCccc
Confidence            9999876554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.01  E-value=3.1e-07  Score=84.53  Aligned_cols=37  Identities=16%  Similarity=0.023  Sum_probs=19.3

Q ss_pred             CCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          242 VPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       242 ~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      +++|+.++|+....  .+..+..++..+++|+.|+|+.+
T Consensus       455 ~~~L~~L~L~~~~i--~~~~~~~l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          455 AKKMEMLSVAFAGD--SDLGMHHVLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             CTTCCEEEEESCCS--SHHHHHHHHHHCTTCCEEEEESC
T ss_pred             chhccEeeccCCCC--cHHHHHHHHhcCCCcCEEECcCC
Confidence            45555555554332  22334444455666666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.99  E-value=1.8e-06  Score=74.68  Aligned_cols=77  Identities=27%  Similarity=0.304  Sum_probs=45.8

Q ss_pred             CCCCccEEEeeeEEeC--------hhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCe-----E
Q 023267          152 SFSSLVSLRLIDVDIP--------EEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSN-----L  218 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~--------~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~-----l  218 (285)
                      .+|+|+.|.+..+.+.        ..++..++..+|.||+|.|.++.+..-..+.  .++|+.|.+..|. +..     +
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~-l~~~~l~~l  213 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGG-LPDSVVEDI  213 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSB-CCHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCC-CChHHHHHH
Confidence            4678888887664321        1236677888888888888776432211122  3567777777664 211     1


Q ss_pred             E-EeCCCceEEEEe
Q 023267          219 E-INAPNLVSFEFS  231 (285)
Q Consensus       219 ~-i~~p~L~~l~~~  231 (285)
                      . ...|+|++|.++
T Consensus       214 ~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          214 LGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHSBCTTCCEEEEE
T ss_pred             HHccCCCCcEEEEe
Confidence            1 145777777764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.98  E-value=1.6e-06  Score=74.01  Aligned_cols=121  Identities=18%  Similarity=0.125  Sum_probs=66.7

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE---eCCCceEEE
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI---NAPNLVSFE  229 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i---~~p~L~~l~  229 (285)
                      +++|++|+|++..++  .+..-+..++.|++|+|.++.-..-...-...++|+.|.+.+|.....+.-   ..++|++|.
T Consensus       182 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             STTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             CCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            667777777776655  222235667777777777664221100011235677777777653333321   356777777


Q ss_pred             Eeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          230 FSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       230 ~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      +.+...    +..+.++++|+.++|++.....   .+-..+..+++++.+.+.
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~---~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS---RLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC---CCCGGGGGSCTTCEEECC
T ss_pred             CCCCCchhhcchhhhcCCCCCEEeCCCCCchh---hccHHHhhccCceEEeCC
Confidence            765321    2335567777777777643211   112234566667766553

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.95  E-value=4.1e-06  Score=74.05  Aligned_cols=36  Identities=31%  Similarity=0.458  Sum_probs=34.6

Q ss_pred             CCcCCCCChHHHHHHHhcCChhhHhhhcccccchhh
Q 023267            2 DDRISKLPDDILICILSRLTIEEAARASILSYRWRY   37 (285)
Q Consensus         2 ~D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~   37 (285)
                      .|.++.||+|++.+||+||+.+|+++++.|||+|+.
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~   51 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI   51 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence            489999999999999999999999999999999986

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.89  E-value=1.1e-06  Score=69.15  Aligned_cols=121  Identities=15%  Similarity=0.222  Sum_probs=87.6

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCe--EE--EeCCCceE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSN--LE--INAPNLVS  227 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~--l~--i~~p~L~~  227 (285)
                      .+++|++|++++..+++  +. -+..+++|++|++.+| .+..+..-...++|+.|.+.++. +..  ..  -..|+|++
T Consensus        42 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCE
Confidence            46899999999988764  22 2778999999999998 34443222345789999999885 332  11  15799999


Q ss_pred             EEEecceee----eeecCCCceEEEEEEccc-cchhhhHHhhhhcCCCcceEEEEEEEee
Q 023267          228 FEFSAGELI----VSFKHVPSLVEMSIEGDY-CTYFVYTLHQFSSFLPQLRTLKLNLMAV  282 (285)
Q Consensus       228 l~~~~~~~~----~~~~~~~~L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~L~~~~~  282 (285)
                      |.+.+....    ..+..+++|++++++... ....     ..+..+++|+.|+++.+.+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-----~~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-----MPLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-----GGGGGCSSCCEEECTTBCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-----HhhcCCCCCCEEECCCCCC
Confidence            999876542    346789999999998754 3222     1367899999999876543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.87  E-value=9.7e-06  Score=67.93  Aligned_cols=141  Identities=16%  Similarity=0.138  Sum_probs=94.6

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP  200 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~  200 (285)
                      ++++.|.+..+.-       -.++.    ...+++|++|+|++..+++  +.. +..++.|++|++.++.- ..+.--..
T Consensus        68 ~~L~~L~L~~n~l-------~~~~~----l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i-~~~~~l~~  132 (291)
T 1h6t_A           68 PNVTKLFLNGNKL-------TDIKP----LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGI-SDINGLVH  132 (291)
T ss_dssp             TTCCEEECCSSCC-------CCCGG----GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCC-CCCGGGGG
T ss_pred             CCCCEEEccCCcc-------CCCcc----cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcC-CCChhhcC
Confidence            5777777654321       11222    4568899999998888765  222 67889999999988742 22211123


Q ss_pred             CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267          201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  276 (285)
                      .++|+.|.++++. +..+.  -..++|+.|.+.+....  ..+..+++|+.++++.......    . -+..+++|+.|+
T Consensus       133 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l----~-~l~~l~~L~~L~  206 (291)
T 1h6t_A          133 LPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL----R-ALAGLKNLDVLE  206 (291)
T ss_dssp             CTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC----G-GGTTCTTCSEEE
T ss_pred             CCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC----h-hhccCCCCCEEE
Confidence            4678899998885 44442  14689999998776531  1277899999999987665332    1 257899999999


Q ss_pred             EEEEee
Q 023267          277 LNLMAV  282 (285)
Q Consensus       277 L~~~~~  282 (285)
                      ++...+
T Consensus       207 l~~n~i  212 (291)
T 1h6t_A          207 LFSQEC  212 (291)
T ss_dssp             EEEEEE
T ss_pred             CcCCcc
Confidence            987654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.87  E-value=2.1e-06  Score=66.38  Aligned_cols=124  Identities=16%  Similarity=0.119  Sum_probs=78.0

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE----EeCCCceE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE----INAPNLVS  227 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~  227 (285)
                      .+++|+.|+|++..++.  +..+...+|.|+.|+++++. +..+..-...++|+.|.++++. +..+.    -..|+|++
T Consensus        17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCCCE
Confidence            45678888888777653  23344445688888888763 3333222234578888888775 55553    24688888


Q ss_pred             EEEeccee---ee--eecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          228 FEFSAGEL---IV--SFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       228 l~~~~~~~---~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      |.+.+...   +.  .+..+++|+.+++++.............+..+++|+.|+++.
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence            88876543   11  456788999999987654322222123467788888887764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.86  E-value=2.3e-06  Score=75.62  Aligned_cols=36  Identities=31%  Similarity=0.404  Sum_probs=34.1

Q ss_pred             CCcCCCCChH----HHHHHHhcCChhhHhhhcccccchhh
Q 023267            2 DDRISKLPDD----ILICILSRLTIEEAARASILSYRWRY   37 (285)
Q Consensus         2 ~D~is~LPd~----iL~~Ils~L~~~d~~~~s~vs~rW~~   37 (285)
                      .|.++.||+|    |+.+||+||+++|++++++|||+|++
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4888999999    99999999999999999999999994

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.83  E-value=6.1e-06  Score=68.13  Aligned_cols=140  Identities=19%  Similarity=0.152  Sum_probs=96.8

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP  200 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~  200 (285)
                      ++++.+.+..+.       .-.+|    ....+++|++|+|++..+++-.  . +..++.|+.|++.++.--.-..+.. 
T Consensus        41 ~~L~~L~l~~n~-------i~~l~----~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-  105 (263)
T 1xeu_A           41 SGVQNFNGDNSN-------IQSLA----GMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-  105 (263)
T ss_dssp             TTCSEEECTTSC-------CCCCT----TGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-
T ss_pred             CcCcEEECcCCC-------cccch----HHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-
Confidence            688888776432       12233    2346899999999998876533  2 7889999999999874211111112 


Q ss_pred             CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267          201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  276 (285)
                       .+|+.|.++++. +..+.  ...++|+.|.+.+....  ..+..+++|+.++++.......     ..+..+++|+.|+
T Consensus       106 -~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-----~~l~~l~~L~~L~  178 (263)
T 1xeu_A          106 -ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-----GGLTRLKKVNWID  178 (263)
T ss_dssp             -SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-----TTSTTCCCCCEEE
T ss_pred             -CcccEEEccCCc-cCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-----HHhccCCCCCEEe
Confidence             679999999885 55442  15688999998776532  2466789999999987665332     4467899999999


Q ss_pred             EEEEee
Q 023267          277 LNLMAV  282 (285)
Q Consensus       277 L~~~~~  282 (285)
                      ++....
T Consensus       179 l~~N~~  184 (263)
T 1xeu_A          179 LTGQKC  184 (263)
T ss_dssp             EEEEEE
T ss_pred             CCCCcc
Confidence            987654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.79  E-value=3.3e-06  Score=78.14  Aligned_cols=141  Identities=16%  Similarity=0.125  Sum_probs=92.9

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP  200 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~  200 (285)
                      ++++.|.+..+.-       -.++.    ...+++|+.|+|++..+++-.   -+..++.|+.|+|.++.- ..+.--..
T Consensus        65 ~~L~~L~Ls~N~l-------~~~~~----l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l-~~l~~l~~  129 (605)
T 1m9s_A           65 PNVTKLFLNGNKL-------TDIKP----LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGI-SDINGLVH  129 (605)
T ss_dssp             TTCCEEECTTSCC-------CCCGG----GGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSCC-CCCGGGGG
T ss_pred             CCCCEEEeeCCCC-------CCChh----hccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCCC-CCCccccC
Confidence            5777777653321       11222    346788888888888776532   367788899999888742 22111123


Q ss_pred             CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267          201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  276 (285)
                      .++|+.|.+++|. +..+.  -..++|+.|.+.+....  ..+..+++|+.|+|+...+...     .-+..+++|+.|+
T Consensus       130 l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-----~~l~~l~~L~~L~  203 (605)
T 1m9s_A          130 LPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-----RALAGLKNLDVLE  203 (605)
T ss_dssp             CTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-----GGGTTCTTCSEEE
T ss_pred             CCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC-----hHHccCCCCCEEE
Confidence            4678889988885 54442  14689999998876541  1277899999999987654332     2367889999999


Q ss_pred             EEEEee
Q 023267          277 LNLMAV  282 (285)
Q Consensus       277 L~~~~~  282 (285)
                      |+...+
T Consensus       204 L~~N~l  209 (605)
T 1m9s_A          204 LFSQEC  209 (605)
T ss_dssp             CCSEEE
T ss_pred             ccCCcC
Confidence            886543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.78  E-value=1.9e-06  Score=73.81  Aligned_cols=35  Identities=17%  Similarity=0.128  Sum_probs=16.6

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c  189 (285)
                      .+++|+.|++.+..+++...   +..++.|++|++.+|
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN  231 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred             CCCccceeecccCCCCCCch---hhcCCcCCEEEccCC
Confidence            34555555555544433221   344555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.78  E-value=1.9e-05  Score=66.93  Aligned_cols=154  Identities=12%  Similarity=0.056  Sum_probs=102.9

Q ss_pred             ccHHHHHHHHHh--CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeec
Q 023267          109 YDVDSWVQFAVD--KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTL  186 (285)
Q Consensus       109 ~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L  186 (285)
                      ..+...+.....  +++++|.+..+.-       -.++...  ...+++|++|+|++..+++..  . +..++.|++|++
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~L   87 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSGNPL-------SQISAAD--LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDL   87 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTTSCC-------CCCCHHH--HTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEEC
T ss_pred             cchhhhHHHHhccCCCCCEEECcCCcc-------CcCCHHH--hhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEEC
Confidence            345555555443  5888888764431       1222211  246899999999987764321  1 678999999999


Q ss_pred             ccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE-eCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhH
Q 023267          187 KGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI-NAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYT  261 (285)
Q Consensus       187 ~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~  261 (285)
                      .++. +..+.   ..++|+.|.+.++. +..+.. ..++|++|.+.+...    ...+..+++|+.++++......  ..
T Consensus        88 s~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~  160 (317)
T 3o53_A           88 NNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VN  160 (317)
T ss_dssp             CSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE--EE
T ss_pred             cCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc--cc
Confidence            9874 22222   22679999999886 666654 468999999987654    2345678999999998765433  22


Q ss_pred             HhhhhcCCCcceEEEEEEEe
Q 023267          262 LHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       262 ~~~ll~~~~~L~~L~L~~~~  281 (285)
                      ...+...+++|+.|+|+...
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSC
T ss_pred             HHHHhhccCcCCEEECCCCc
Confidence            33445678999999987543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.76  E-value=2.9e-06  Score=71.44  Aligned_cols=75  Identities=12%  Similarity=0.091  Sum_probs=41.2

Q ss_pred             CceeEEEEecCCCCCeEE----EeCCCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcc
Q 023267          202 LKLKYLELRDLPNLSNLE----INAPNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQL  272 (285)
Q Consensus       202 ~~L~~L~i~~c~~l~~l~----i~~p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L  272 (285)
                      ++|+.|.+.++. +..+.    -..++|++|.+.+...     +..+..+++|+.++++.......   ....+..+++|
T Consensus       126 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L  201 (306)
T 2z66_A          126 RNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSL  201 (306)
T ss_dssp             TTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTC
T ss_pred             cCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc---CHHHhcCCCCC
Confidence            345566655553 22111    1246777777665432     23455677888888776543221   11234667788


Q ss_pred             eEEEEEEE
Q 023267          273 RTLKLNLM  280 (285)
Q Consensus       273 ~~L~L~~~  280 (285)
                      +.|+|+..
T Consensus       202 ~~L~L~~N  209 (306)
T 2z66_A          202 QVLNMSHN  209 (306)
T ss_dssp             CEEECTTS
T ss_pred             CEEECCCC
Confidence            88877643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.76  E-value=4.6e-06  Score=70.53  Aligned_cols=140  Identities=14%  Similarity=0.174  Sum_probs=91.0

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP  200 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~  200 (285)
                      ++++.|.+..+.-       -.++.    ...+++|++|+|++..+++-.   -+..++.|++|++.++.- ..+.--..
T Consensus        63 ~~L~~L~L~~n~i-------~~~~~----~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l-~~~~~l~~  127 (308)
T 1h6u_A           63 NNLIGLELKDNQI-------TDLAP----LKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQI-TDVTPLAG  127 (308)
T ss_dssp             TTCCEEECCSSCC-------CCCGG----GTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEECTTSCC-CCCGGGTT
T ss_pred             CCCCEEEccCCcC-------CCChh----HccCCCCCEEEccCCcCCCch---hhcCCCCCCEEECCCCCC-CCchhhcC
Confidence            5777777654321       12222    356788899988888876532   266788899999888742 22111234


Q ss_pred             CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267          201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  276 (285)
                      .++|+.|.+.++. +..+.  -..++|+.|.+.+....  ..+..+++|+.++++.........     +..+++|+.|+
T Consensus       128 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~  201 (308)
T 1h6u_A          128 LSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-----LASLPNLIEVH  201 (308)
T ss_dssp             CTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEE
T ss_pred             CCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-----hcCCCCCCEEE
Confidence            4678888888875 44332  25688999988776432  126788999999998765433211     57889999998


Q ss_pred             EEEEe
Q 023267          277 LNLMA  281 (285)
Q Consensus       277 L~~~~  281 (285)
                      |+...
T Consensus       202 L~~N~  206 (308)
T 1h6u_A          202 LKNNQ  206 (308)
T ss_dssp             CTTSC
T ss_pred             ccCCc
Confidence            87543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.75  E-value=5.3e-06  Score=76.73  Aligned_cols=139  Identities=22%  Similarity=0.195  Sum_probs=84.4

Q ss_pred             CCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHH
Q 023267           95 SLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYL  174 (285)
Q Consensus        95 ~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l  174 (285)
                      .++.|.++......  +..   ....++++.|.+..+.-.       .+|    .+..+++|+.|+|++..+.+-  . -
T Consensus        66 ~L~~L~Ls~N~l~~--~~~---l~~l~~L~~L~Ls~N~l~-------~l~----~l~~l~~L~~L~Ls~N~l~~l--~-~  126 (605)
T 1m9s_A           66 NVTKLFLNGNKLTD--IKP---LTNLKNLGWLFLDENKIK-------DLS----SLKDLKKLKSLSLEHNGISDI--N-G  126 (605)
T ss_dssp             TCCEEECTTSCCCC--CGG---GGGCTTCCEEECCSSCCC-------CCT----TSTTCTTCCEEECTTSCCCCC--G-G
T ss_pred             CCCEEEeeCCCCCC--Chh---hccCCCCCEEECcCCCCC-------CCh----hhccCCCCCEEEecCCCCCCC--c-c
Confidence            46677765433221  111   222367888877644311       122    245678888888888877652  2 2


Q ss_pred             HhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEE
Q 023267          175 LCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSI  250 (285)
Q Consensus       175 l~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l  250 (285)
                      +..+|+|+.|+|.+|.- ..+..-...++|+.|.+++|. +..+.  ...|+|+.|.+.+....  ..+..+++|+.|+|
T Consensus       127 l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL  204 (605)
T ss_dssp             GGGCTTCSEEECCSSCC-CCCGGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred             ccCCCccCEEECCCCcc-CCchhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence            66788888888888742 222222244678888888875 43321  25688888888765431  24667888888888


Q ss_pred             Eccc
Q 023267          251 EGDY  254 (285)
Q Consensus       251 ~~~~  254 (285)
                      ....
T Consensus       205 ~~N~  208 (605)
T 1m9s_A          205 FSQE  208 (605)
T ss_dssp             CSEE
T ss_pred             cCCc
Confidence            7654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.74  E-value=9.9e-06  Score=72.99  Aligned_cols=12  Identities=33%  Similarity=0.567  Sum_probs=6.8

Q ss_pred             CCCcceEEEEEE
Q 023267          268 FLPQLRTLKLNL  279 (285)
Q Consensus       268 ~~~~L~~L~L~~  279 (285)
                      .+++|+.|+|+.
T Consensus       189 ~l~~L~~L~Ls~  200 (487)
T 3oja_A          189 VFAKLKTLDLSS  200 (487)
T ss_dssp             CCTTCCEEECCS
T ss_pred             cCCCCCEEECCC
Confidence            356666666553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.73  E-value=6.4e-06  Score=73.42  Aligned_cols=60  Identities=30%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecC
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDL  212 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c  212 (285)
                      .+++|++|+|++..++.-. ...+..+++|+.|++.+|..+..+...  ...++|+.|.++++
T Consensus       145 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             SCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             ccCCCCEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            4677777777766654211 113455677777777666554443211  12345566665555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.72  E-value=5.5e-05  Score=64.95  Aligned_cols=148  Identities=18%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCc--ceEEEe
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKL--IRIRVS  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~--~~~~i~  198 (285)
                      ++++.|.+..+.       ...++..  ....+++|++|+|++..++.-. ...+..+++|++|++.++.-.  .....-
T Consensus        76 ~~L~~L~L~~n~-------l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  145 (353)
T 2z80_A           76 VNLQALVLTSNG-------INTIEED--SFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLF  145 (353)
T ss_dssp             TTCCEEECTTSC-------CCEECTT--TTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEECTTCCCSSSCSSCSC
T ss_pred             CCCCEEECCCCc-------cCccCHh--hcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEECCCCCCcccCchhhh
Confidence            577777765332       1222222  1346789999999988776422 234678999999999886321  110122


Q ss_pred             CCCCceeEEEEecCCCCCeEEE----eCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267          199 GPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP  270 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~  270 (285)
                      ...++|+.|.+.++..+..+..    ..++|+++.+.+...    +..+..+++|++++++........   ..+...++
T Consensus       146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~  222 (353)
T 2z80_A          146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL---EIFVDVTS  222 (353)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH---HHHHHHTT
T ss_pred             ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch---hhhhhhcc
Confidence            3456899999998854555531    467888888877543    234667899999999876643322   22345678


Q ss_pred             cceEEEEEEEe
Q 023267          271 QLRTLKLNLMA  281 (285)
Q Consensus       271 ~L~~L~L~~~~  281 (285)
                      +|+.|+++...
T Consensus       223 ~L~~L~L~~n~  233 (353)
T 2z80_A          223 SVECLELRDTD  233 (353)
T ss_dssp             TEEEEEEESCB
T ss_pred             cccEEECCCCc
Confidence            89998887543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.72  E-value=2.3e-05  Score=66.36  Aligned_cols=173  Identities=14%  Similarity=0.111  Sum_probs=107.3

Q ss_pred             hHHHhHHHHHhccCCCCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccE
Q 023267           79 NFINLVDPILGLLQTKSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVS  158 (285)
Q Consensus        79 ~~~~~v~~~L~~~~~~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~  158 (285)
                      .+..........  .+.++.+.++...... .....+  ...++++.|.+..+.-       ...+.    ...+++|++
T Consensus        21 ~l~~~~~~~~~~--~~~L~~L~L~~n~l~~-~~~~~~--~~l~~L~~L~Ls~n~l-------~~~~~----~~~l~~L~~   84 (317)
T 3o53_A           21 SLKQALASLRQS--AWNVKELDLSGNPLSQ-ISAADL--APFTKLELLNLSSNVL-------YETLD----LESLSTLRT   84 (317)
T ss_dssp             THHHHHHHHHTT--GGGCSEEECTTSCCCC-CCHHHH--TTCTTCCEEECTTSCC-------EEEEE----ETTCTTCCE
T ss_pred             chhhhHHHHhcc--CCCCCEEECcCCccCc-CCHHHh--hCCCcCCEEECCCCcC-------Ccchh----hhhcCCCCE
Confidence            344444444332  2357888876543221 111122  1226899888764331       11221    357899999


Q ss_pred             EEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE---E-eCCCceEEEEecce
Q 023267          159 LRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE---I-NAPNLVSFEFSAGE  234 (285)
Q Consensus       159 L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~---i-~~p~L~~l~~~~~~  234 (285)
                      |+|++..+++-      ..++.|++|++.++. +..+... ..++|+.|.++++. +..+.   + ..++|++|.+.+..
T Consensus        85 L~Ls~n~l~~l------~~~~~L~~L~l~~n~-l~~~~~~-~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           85 LDLNNNYVQEL------LVGPSIETLHAANNN-ISRVSCS-RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             EECCSSEEEEE------EECTTCCEEECCSSC-CSEEEEC-CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSC
T ss_pred             EECcCCccccc------cCCCCcCEEECCCCc-cCCcCcc-ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCC
Confidence            99999887652      356999999999874 3333322 35679999999885 44332   1 46899999998765


Q ss_pred             eee----ee-cCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          235 LIV----SF-KHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       235 ~~~----~~-~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      ...    .+ ..+++|+.++++........     -...+++|+.|+|+...
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~l~~L~~L~Ls~N~  202 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDVK-----GQVVFAKLKTLDLSSNK  202 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEEE-----CCCCCTTCCEEECCSSC
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCcccc-----cccccccCCEEECCCCc
Confidence            421    12 36799999999876643321     12358999999987543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.70  E-value=5.8e-06  Score=69.34  Aligned_cols=140  Identities=17%  Similarity=0.171  Sum_probs=97.7

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP  200 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~  200 (285)
                      ++++.+.+..+.-       -.++.    ...+++|++|+|++..+++-.  . +..+++|+.|++.++.- ..+.--..
T Consensus        46 ~~L~~L~l~~~~i-------~~~~~----~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l-~~~~~l~~  110 (291)
T 1h6t_A           46 NSIDQIIANNSDI-------KSVQG----IQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKV-KDLSSLKD  110 (291)
T ss_dssp             HTCCEEECTTSCC-------CCCTT----GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCGGGGTT
T ss_pred             CcccEEEccCCCc-------ccChh----HhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcC-CCChhhcc
Confidence            5788887754321       12222    346899999999998876532  2 78999999999998742 22111234


Q ss_pred             CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267          201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  276 (285)
                      .++|+.|.++++. +..+.  ...|+|+.|.+.+....  ..+..+++|+.++++.........     +..+++|+.|+
T Consensus       111 l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~  184 (291)
T 1h6t_A          111 LKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLY  184 (291)
T ss_dssp             CTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEE
T ss_pred             CCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-----hcCCCccCEEE
Confidence            5689999999885 54442  15689999999876542  246678999999999766533211     67899999999


Q ss_pred             EEEEe
Q 023267          277 LNLMA  281 (285)
Q Consensus       277 L~~~~  281 (285)
                      |+...
T Consensus       185 L~~N~  189 (291)
T 1h6t_A          185 LSKNH  189 (291)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            87643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.67  E-value=7e-06  Score=70.32  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=57.1

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCC----------------
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPN----------------  214 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~----------------  214 (285)
                      ..+++|++|+|.+..+++..-   +..++.|+.|++.+|.....+..-...++|+.|.+.+|.-                
T Consensus       107 ~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  183 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS  183 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             cCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence            455666666666655443211   4556666666666654332221122233445555444421                


Q ss_pred             -----CCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          215 -----LSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       215 -----l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                           +..+.  ...++|+.+.+.+....  ..+..+++|+++++++........     +..+++|+.|+++.+
T Consensus       184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTN  253 (347)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS
T ss_pred             ccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-----hhcCCCCCEEECCCC
Confidence                 11111  12344444444333221  114456667777666544322111     566777777777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.66  E-value=6.6e-06  Score=73.06  Aligned_cols=54  Identities=20%  Similarity=0.313  Sum_probs=27.6

Q ss_pred             CCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          222 APNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       222 ~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      .++|+.|.+.+....    ..+.++++|+.++|+........   ...+..+++|+.|+|+
T Consensus       230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~  287 (440)
T 3zyj_A          230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP---HDLFTPLHHLERIHLH  287 (440)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC---TTTTSSCTTCCEEECC
T ss_pred             CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC---hhHhccccCCCEEEcC
Confidence            355555555544321    12445666666666654432211   2234566777777665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.66  E-value=1.1e-05  Score=73.44  Aligned_cols=62  Identities=16%  Similarity=0.115  Sum_probs=38.5

Q ss_pred             CCCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCCcceEE-EeCCCCceeEEEEecCC
Q 023267          151 SSFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEKLIRIR-VSGPSLKLKYLELRDLP  213 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~~~~~~-i~~~~~~L~~L~i~~c~  213 (285)
                      ..+++|++|+|++..+++-. ....+..+++|++|+++++.- ..+. .-...++|+.|.++++.
T Consensus       358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSC
T ss_pred             hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC-ccCChhhcccccccEEECCCCC
Confidence            46788888888888776543 235678888999998888732 1110 00122456666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.63  E-value=2.5e-05  Score=70.35  Aligned_cols=142  Identities=13%  Similarity=0.074  Sum_probs=98.5

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP  200 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~  200 (285)
                      ++++.|.+..+.-       -.++...  ...+++|++|+|++..+++..  . +..++.|+.|+|+++. +..+.   .
T Consensus        34 ~~L~~L~Ls~n~l-------~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~---~   97 (487)
T 3oja_A           34 WNVKELDLSGNPL-------SQISAAD--LAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL---V   97 (487)
T ss_dssp             GGCCEEECCSSCC-------CCCCGGG--GTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE-EEEEE---E
T ss_pred             CCccEEEeeCCcC-------CCCCHHH--HhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc-CCCCC---C
Confidence            4788888875432       2233222  357899999999988765321  1 7789999999999883 33322   2


Q ss_pred             CCceeEEEEecCCCCCeEEE-eCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEE
Q 023267          201 SLKLKYLELRDLPNLSNLEI-NAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTL  275 (285)
Q Consensus       201 ~~~L~~L~i~~c~~l~~l~i-~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L  275 (285)
                      .++|+.|.++++. +..+.. ..|+|+.|.+.+...    +..++.+++|+.++++......  .....+...+++|+.|
T Consensus        98 ~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A           98 GPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--VNFAELAASSDTLEHL  174 (487)
T ss_dssp             CTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE--EEGGGGGGGTTTCCEE
T ss_pred             CCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC--cChHHHhhhCCcccEE
Confidence            2679999999986 555543 468999999987653    3456778999999998866543  2233344578999999


Q ss_pred             EEEEEe
Q 023267          276 KLNLMA  281 (285)
Q Consensus       276 ~L~~~~  281 (285)
                      +|+...
T Consensus       175 ~Ls~N~  180 (487)
T 3oja_A          175 NLQYNF  180 (487)
T ss_dssp             ECTTSC
T ss_pred             ecCCCc
Confidence            987543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.62  E-value=2.5e-05  Score=65.94  Aligned_cols=162  Identities=19%  Similarity=0.227  Sum_probs=105.9

Q ss_pred             CCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHH
Q 023267           95 SLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYL  174 (285)
Q Consensus        95 ~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~l  174 (285)
                      .++.+.++......  +..   ....++++.|.+..+.-.       .++    ....+++|++|+|++..+++-  .. 
T Consensus        64 ~L~~L~L~~n~i~~--~~~---~~~l~~L~~L~L~~n~l~-------~~~----~~~~l~~L~~L~l~~n~l~~~--~~-  124 (308)
T 1h6u_A           64 NLIGLELKDNQITD--LAP---LKNLTKITELELSGNPLK-------NVS----AIAGLQSIKTLDLTSTQITDV--TP-  124 (308)
T ss_dssp             TCCEEECCSSCCCC--CGG---GTTCCSCCEEECCSCCCS-------CCG----GGTTCTTCCEEECTTSCCCCC--GG-
T ss_pred             CCCEEEccCCcCCC--Chh---HccCCCCCEEEccCCcCC-------Cch----hhcCCCCCCEEECCCCCCCCc--hh-
Confidence            46777776543321  111   122268888888654311       122    245689999999999887653  22 


Q ss_pred             HhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEE
Q 023267          175 LCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSI  250 (285)
Q Consensus       175 l~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l  250 (285)
                      +..+++|++|++.++.-. .+.--...++|+.|.++++. +..+.  ...++|+.|.+.+....  ..+..+++|+.+++
T Consensus       125 l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L  202 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHL  202 (308)
T ss_dssp             GTTCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred             hcCCCCCCEEECCCCccC-cCccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEc
Confidence            778999999999987421 11112234678999999885 44432  25689999998876542  12677899999999


Q ss_pred             EccccchhhhHHhhhhcCCCcceEEEEEEEee
Q 023267          251 EGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAV  282 (285)
Q Consensus       251 ~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~~  282 (285)
                      +........ .    +..+++|+.|+|+...+
T Consensus       203 ~~N~l~~~~-~----l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          203 KNNQISDVS-P----LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             TTSCCCBCG-G----GTTCTTCCEEEEEEEEE
T ss_pred             cCCccCccc-c----ccCCCCCCEEEccCCee
Confidence            876653322 1    57899999999987654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.61  E-value=6.5e-06  Score=69.55  Aligned_cols=89  Identities=20%  Similarity=0.157  Sum_probs=47.1

Q ss_pred             CCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhH--HH
Q 023267           95 SLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEV--LH  172 (285)
Q Consensus        95 ~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~--l~  172 (285)
                      .++.+.+.-.......+..........+++++.+..+.-.      -..|..++. ..+++|++|+|++..+++..  +.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~  137 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKIT------GTMPPLPLE-ATGLALSSLRLRNVSWATGRSWLA  137 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCB------SCCCCCSSS-CCCBCCSSCEEESCCCSSTTSSHH
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEec------cchhhhhhh-ccCCCCCEEEeecccccchhhhhH
Confidence            3555555433222233445555555578999999755422      122222211 35677777777777765421  11


Q ss_pred             -HHHhcCCccceeecccCC
Q 023267          173 -YLLCYCPLLEVLTLKGAE  190 (285)
Q Consensus       173 -~ll~~cp~Le~L~L~~c~  190 (285)
                       .-+..++.|++|+|.++.
T Consensus       138 ~~~~~~~~~L~~L~Ls~n~  156 (310)
T 4glp_A          138 ELQQWLKPGLKVLSIAQAH  156 (310)
T ss_dssp             HHHTTBCSCCCEEEEECCS
T ss_pred             HHHhhhccCCCEEEeeCCC
Confidence             112356777777776653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.59  E-value=2.1e-05  Score=74.91  Aligned_cols=101  Identities=18%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             CCCCCccEEEeeeEEeChhHHH--HHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeE--EEeCCCce
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLH--YLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNL--EINAPNLV  226 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~--~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l--~i~~p~L~  226 (285)
                      ..+++|++|+|++..+++....  ..+.+|+.|++|++.++.-...... ...++|+.|.+.++.-...+  .-..++|+
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~  226 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ  226 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence            4577888888887776554322  2367788888888877642222111 34456777777666421111  11345666


Q ss_pred             EEEEeccee----eeeecCCCceEEEEEEc
Q 023267          227 SFEFSAGEL----IVSFKHVPSLVEMSIEG  252 (285)
Q Consensus       227 ~l~~~~~~~----~~~~~~~~~L~~l~l~~  252 (285)
                      +|.+.+...    +..+..+++|+.++++.
T Consensus       227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          227 HLDISGNKLSGDFSRAISTCTELKLLNISS  256 (768)
T ss_dssp             EEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred             EEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence            666554432    12244455555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.59  E-value=2.1e-05  Score=69.81  Aligned_cols=146  Identities=21%  Similarity=0.141  Sum_probs=90.4

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--  198 (285)
                      ++++.|.+..+.-       -.+|...  ...+++|++|+|++..++.-. ...+..+++|++|+|.++..+..+.-.  
T Consensus       112 ~~L~~L~L~~n~l-------~~~~~~~--~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~  181 (440)
T 3zyj_A          112 ANLNTLELFDNRL-------TTIPNGA--FVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAF  181 (440)
T ss_dssp             SSCCEEECCSSCC-------SSCCTTT--SCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred             ccCCEEECCCCcC-------CeeCHhH--hhccccCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcchh
Confidence            6788888764421       2333322  245788888888877654321 123567888888888887666554321  


Q ss_pred             CCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcc
Q 023267          199 GPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQL  272 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L  272 (285)
                      ...++|+.|.+.++. +..+.  ...++|+.|.+.+....    ..+.++++|+++++.........   ...+..+++|
T Consensus       182 ~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L  257 (440)
T 3zyj_A          182 EGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE---RNAFDNLQSL  257 (440)
T ss_dssp             TTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC---TTSSTTCTTC
T ss_pred             hcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC---hhhhcCCCCC
Confidence            234578888888774 44432  14577888888766432    24567888888888765543221   1234677888


Q ss_pred             eEEEEEEE
Q 023267          273 RTLKLNLM  280 (285)
Q Consensus       273 ~~L~L~~~  280 (285)
                      +.|+|+..
T Consensus       258 ~~L~L~~N  265 (440)
T 3zyj_A          258 VEINLAHN  265 (440)
T ss_dssp             CEEECTTS
T ss_pred             CEEECCCC
Confidence            88887643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.58  E-value=5.3e-06  Score=72.31  Aligned_cols=156  Identities=12%  Similarity=0.080  Sum_probs=87.1

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhH---HHHHHhcC---------Cccceeeccc
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEV---LHYLLCYC---------PLLEVLTLKG  188 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~---l~~ll~~c---------p~Le~L~L~~  188 (285)
                      ++++.|.+..+.-..  .+...+|..+   ..+++|++|+|+++.+++..   +...+..+         |.|++|+|.+
T Consensus        94 ~~L~~L~Ls~n~l~~--~~~~~l~~~l---~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGP--TAQEPLIDFL---SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             TTCCEEECCSCCCCT--TTHHHHHHHH---HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             CcccEEECCCCcCCH--HHHHHHHHHH---HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence            567777665433111  1111233222   34677888888877776544   33333344         7888888877


Q ss_pred             CCCc-ce-EEE---eCCCCceeEEEEecCCCCCeE---------EEeCCCceEEEEeccee--------eeeecCCCceE
Q 023267          189 AEKL-IR-IRV---SGPSLKLKYLELRDLPNLSNL---------EINAPNLVSFEFSAGEL--------IVSFKHVPSLV  246 (285)
Q Consensus       189 c~~~-~~-~~i---~~~~~~L~~L~i~~c~~l~~l---------~i~~p~L~~l~~~~~~~--------~~~~~~~~~L~  246 (285)
                      |.-- .. ..+   -...++|+.|.+.+|. +...         ....|+|+.|.+.+...        +..+..+++|+
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence            6421 01 000   0123468888888874 4311         11467888888876543        12356778888


Q ss_pred             EEEEEccccchh-hhHHhhhhc--CCCcceEEEEEEEee
Q 023267          247 EMSIEGDYCTYF-VYTLHQFSS--FLPQLRTLKLNLMAV  282 (285)
Q Consensus       247 ~l~l~~~~~~~~-~~~~~~ll~--~~~~L~~L~L~~~~~  282 (285)
                      .++|+....... ...+...+.  .+++|+.|+|+.+.+
T Consensus       248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            888887654332 223334443  388888888876543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.57  E-value=6.8e-06  Score=68.44  Aligned_cols=146  Identities=18%  Similarity=0.070  Sum_probs=89.6

Q ss_pred             CCceEEEEEecCCCCCCCceeec-CccccCCCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceE-EE
Q 023267          121 KRVQRLELDFSESKTEGHELHTF-SPYFKTTSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RV  197 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~-p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i  197 (285)
                      ++++.|.+....-       ..+ |..   ...+++|++|+|.+.. ++.-. ...+..+++|++|++.++.-.... ..
T Consensus        56 ~~L~~L~l~~n~l-------~~~~~~~---~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~  124 (285)
T 1ozn_A           56 RNLTILWLHSNVL-------ARIDAAA---FTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGL  124 (285)
T ss_dssp             TTCCEEECCSSCC-------CEECTTT---TTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CCCCEEECCCCcc-------ceeCHhh---cCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhH
Confidence            5777777653321       122 222   3467888999888775 43321 123567888999999887421110 11


Q ss_pred             eCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCC
Q 023267          198 SGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFL  269 (285)
Q Consensus       198 ~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~  269 (285)
                      -...++|+.|.+.++. +..+..    ..++|++|.+.+....    ..+..+++|+.++++.......   ....+..+
T Consensus       125 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l  200 (285)
T 1ozn_A          125 FRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV---HPHAFRDL  200 (285)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE---CTTTTTTC
T ss_pred             hhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc---CHhHccCc
Confidence            1234678888888875 444331    4688999998876432    1256789999999987654322   12335678


Q ss_pred             CcceEEEEEEEe
Q 023267          270 PQLRTLKLNLMA  281 (285)
Q Consensus       270 ~~L~~L~L~~~~  281 (285)
                      ++|+.|+|+...
T Consensus       201 ~~L~~L~l~~n~  212 (285)
T 1ozn_A          201 GRLMTLYLFANN  212 (285)
T ss_dssp             TTCCEEECCSSC
T ss_pred             ccccEeeCCCCc
Confidence            899999887543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.51  E-value=1.3e-05  Score=69.85  Aligned_cols=155  Identities=18%  Similarity=0.115  Sum_probs=97.0

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeC---h---hHH---HHHHhcCCccceeecccCCC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIP---E---EVL---HYLLCYCPLLEVLTLKGAEK  191 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~---~---~~l---~~ll~~cp~Le~L~L~~c~~  191 (285)
                      ++++.|.+..+.-.  ......++.   ....+++|++|+|+++.++   +   .++   ...+..++.|++|+|.++.-
T Consensus        32 ~~L~~L~L~~n~i~--~~~~~~l~~---~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           32 DSVKEIVLSGNTIG--TEAARWLSE---NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             SCCCEEECTTSEEC--HHHHHHHHH---TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             CCccEEECCCCCCC--HHHHHHHHH---HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            68988887643211  000011111   1346899999999987543   1   233   33467899999999998742


Q ss_pred             cc----eE--EEeCCCCceeEEEEecCCCCCeEE---E-e----C---------CCceEEEEecceee--------eeec
Q 023267          192 LI----RI--RVSGPSLKLKYLELRDLPNLSNLE---I-N----A---------PNLVSFEFSAGELI--------VSFK  240 (285)
Q Consensus       192 ~~----~~--~i~~~~~~L~~L~i~~c~~l~~l~---i-~----~---------p~L~~l~~~~~~~~--------~~~~  240 (285)
                      ..    .+  .+ ...++|+.|.+.+|. +....   + .    .         |+|++|.+.+....        -.+.
T Consensus       107 ~~~~~~~l~~~l-~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          107 GPTAQEPLIDFL-SKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CTTTHHHHHHHH-HHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHH-HhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            21    01  11 234689999999986 43211   1 1    1         89999999765431        2345


Q ss_pred             CCCceEEEEEEccccchh-hhHHhh-hhcCCCcceEEEEEEEee
Q 023267          241 HVPSLVEMSIEGDYCTYF-VYTLHQ-FSSFLPQLRTLKLNLMAV  282 (285)
Q Consensus       241 ~~~~L~~l~l~~~~~~~~-~~~~~~-ll~~~~~L~~L~L~~~~~  282 (285)
                      .+++|+.++++....... ...+.. .+..+++|+.|+|+...+
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence            789999999998665421 122333 667899999999986654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.50  E-value=5.4e-05  Score=69.77  Aligned_cols=97  Identities=21%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             CCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE------EeCC
Q 023267          150 TSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE------INAP  223 (285)
Q Consensus       150 ~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~------i~~p  223 (285)
                      ...+++|++|++.++.++.  +..+  .+|.|++|++.++.......+. ..++|+.|.++++. +..+.      ...+
T Consensus       303 l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~  376 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNA-LSFSGCCSYSDLGTN  376 (606)
T ss_dssp             CCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCCC-CCTTCCEEECCSSC-EEEEEECCHHHHCCS
T ss_pred             ccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhhc-cCCCCCEEECcCCc-cCCCcchhhhhccCC
Confidence            3456777777777777622  3232  6777777777776544433222 33456666666553 33221      1345


Q ss_pred             CceEEEEeccee---eeeecCCCceEEEEEEc
Q 023267          224 NLVSFEFSAGEL---IVSFKHVPSLVEMSIEG  252 (285)
Q Consensus       224 ~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~  252 (285)
                      +|++|.+.+...   +..+.++++|+.++++.
T Consensus       377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~  408 (606)
T 3vq2_A          377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQH  408 (606)
T ss_dssp             CCCEEECCSCSEEEECCCCTTCTTCCEEECTT
T ss_pred             cccEeECCCCccccchhhccCCCCCCeeECCC
Confidence            555555544322   11233445555555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.49  E-value=3.4e-05  Score=73.43  Aligned_cols=127  Identities=15%  Similarity=0.207  Sum_probs=77.5

Q ss_pred             CCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCC-eEE----EeCCC
Q 023267          150 TSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLS-NLE----INAPN  224 (285)
Q Consensus       150 ~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~-~l~----i~~p~  224 (285)
                      ...+++|++|+|++..+++. +...+..+++|++|++.+|.-...+... ..++|+.|.+.+|. +. .+.    -.+++
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~  295 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENK-FTGEIPDFLSGACDT  295 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSE-EEESCCCCSCTTCTT
T ss_pred             cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCc-cCCccCHHHHhhcCc
Confidence            45678899999988887654 3345778899999999887532221111 44578888887774 21 111    11377


Q ss_pred             ceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          225 LVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       225 L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      |++|.+.+....    ..++.+++|++++++......  .-....+..+++|+.|+|+...
T Consensus       296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE--ECCHHHHTTCTTCCEEECCSSE
T ss_pred             CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC--cCCHHHHhcCCCCCEEeCcCCc
Confidence            888887765432    235667888888877654321  0111224566777777766543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.49  E-value=0.00016  Score=65.78  Aligned_cols=146  Identities=20%  Similarity=0.187  Sum_probs=85.9

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCc--ceEEEe
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKL--IRIRVS  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~--~~~~i~  198 (285)
                      ++++.|.+..+.       .-.++...  ...+++|++|+|++..+++..- ..+.++++|++|++.++.-.  .....-
T Consensus        50 ~~L~~L~Ls~n~-------i~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  119 (549)
T 2z81_A           50 ANLQVLILKSSR-------INTIEGDA--FYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGNPYQTLGVTSLF  119 (549)
T ss_dssp             TTCCEEECTTSC-------CCEECTTT--TTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred             CcccEEECCCCC-------cCccChhh--ccccccCCEEECCCCccCccCH-HHhccCCCCcEEECCCCcccccchhhhh
Confidence            577777765332       12233221  3467889999998887765432 23578899999999887421  111122


Q ss_pred             CCCCceeEEEEecCCCCCeEE----EeCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267          199 GPSLKLKYLELRDLPNLSNLE----INAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP  270 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~  270 (285)
                      ...++|+.|.+.++.....+.    ...++|+.|.+.+...    +..+..+++|++++++.........   .+...++
T Consensus       120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~  196 (549)
T 2z81_A          120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE---IFADILS  196 (549)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH---HHHHSTT
T ss_pred             hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch---hhHhhcc
Confidence            344578888888876444442    1357788888776543    2235567788888887654332211   2234466


Q ss_pred             cceEEEEEE
Q 023267          271 QLRTLKLNL  279 (285)
Q Consensus       271 ~L~~L~L~~  279 (285)
                      +|+.|+++.
T Consensus       197 ~L~~L~L~~  205 (549)
T 2z81_A          197 SVRYLELRD  205 (549)
T ss_dssp             TBSEEEEES
T ss_pred             cccEEEccC
Confidence            666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.49  E-value=1.3e-05  Score=66.34  Aligned_cols=142  Identities=18%  Similarity=0.145  Sum_probs=90.0

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--e
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--S  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~  198 (285)
                      ++++.|.+..+.-.       .++    ....+++|++|+|.+..+++-. ...+..++.|++|++.++.- ..+.-  -
T Consensus        63 ~~L~~L~l~~n~l~-------~~~----~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~  129 (272)
T 3rfs_A           63 PNVRYLALGGNKLH-------DIS----ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQL-QSLPDGVF  129 (272)
T ss_dssp             TTCCEEECTTSCCC-------CCG----GGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTT
T ss_pred             CCCcEEECCCCCCC-------Cch----hhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCcC-CccCHHHh
Confidence            67777776533211       111    2456788999998887765321 22356788999999988742 21111  1


Q ss_pred             CCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267          199 GPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP  270 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~  270 (285)
                      ...++|+.|.+.++. +..+.-    ..++|+.|.+.+....    ..+..+++|+.+++.........   ...+..++
T Consensus       130 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~  205 (272)
T 3rfs_A          130 DKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP---DGVFDRLT  205 (272)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCT
T ss_pred             ccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC---HHHHhCCc
Confidence            234678889988884 554432    4688999988776542    12467899999999876543221   23457789


Q ss_pred             cceEEEEEE
Q 023267          271 QLRTLKLNL  279 (285)
Q Consensus       271 ~L~~L~L~~  279 (285)
                      +|+.|+|+.
T Consensus       206 ~L~~L~l~~  214 (272)
T 3rfs_A          206 SLQYIWLHD  214 (272)
T ss_dssp             TCCEEECCS
T ss_pred             CCCEEEccC
Confidence            999988864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.49  E-value=3.1e-05  Score=69.19  Aligned_cols=115  Identities=15%  Similarity=0.142  Sum_probs=52.3

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE-eCCCceEEEE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI-NAPNLVSFEF  230 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~l~~  230 (285)
                      .+++|++|++++..+++-.    +..++.|++|++.++...+.+.+. ..++|+.|.++++. +..+.+ ..++|+.|.+
T Consensus       125 ~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l  198 (457)
T 3bz5_A          125 QNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLDCSFNK-ITELDVSQNKLLNRLNC  198 (457)
T ss_dssp             TCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCT-TCTTCCEEECCSSC-CCCCCCTTCTTCCEEEC
T ss_pred             CCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccccc-cCCcCCEEECCCCc-cceeccccCCCCCEEEC
Confidence            4455555555554443321    344555555555555433333222 22345555555553 333322 2455555555


Q ss_pred             eccee-eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          231 SAGEL-IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       231 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      .+... ...++.+++|+.++++.......  .    +..+++|+.|+++
T Consensus       199 ~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i--p----~~~l~~L~~L~l~  241 (457)
T 3bz5_A          199 DTNNITKLDLNQNIQLTFLDCSSNKLTEI--D----VTPLTQLTYFDCS  241 (457)
T ss_dssp             CSSCCSCCCCTTCTTCSEEECCSSCCSCC--C----CTTCTTCSEEECC
T ss_pred             cCCcCCeeccccCCCCCEEECcCCccccc--C----ccccCCCCEEEee
Confidence            44332 12344556666666554433221  0    3445555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.49  E-value=3.2e-05  Score=68.81  Aligned_cols=124  Identities=18%  Similarity=0.142  Sum_probs=81.1

Q ss_pred             CCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE----eCCC
Q 023267          150 TSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI----NAPN  224 (285)
Q Consensus       150 ~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~  224 (285)
                      ...+++|++|+|.++. ++.- -...+.++++|+.|+|.++.- ..+.--...++|+.|.++++. +..+.-    ..++
T Consensus       167 ~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~  243 (452)
T 3zyi_A          167 FNRVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSS  243 (452)
T ss_dssp             TTTCTTCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTSC-CSEECGGGGTTCTT
T ss_pred             HhcCCcccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCCc-CcccCcccccCccC
Confidence            3468999999998743 2111 112356789999999998742 222112344678999998885 555432    4688


Q ss_pred             ceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          225 LVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       225 L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      |+.|.+.+....    ..+.++++|+.++|++.......   ...+..+++|+.|+|+.
T Consensus       244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---TTSSTTCTTCCEEECCS
T ss_pred             CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC---hHHhccccCCCEEEccC
Confidence            999988776542    23567899999999876543221   23356788888888763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.48  E-value=4e-06  Score=72.92  Aligned_cols=38  Identities=18%  Similarity=0.024  Sum_probs=21.8

Q ss_pred             CCCccEEEeeeEEeChhHHHHHH----hcCCccceeecccCC
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLL----CYCPLLEVLTLKGAE  190 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll----~~cp~Le~L~L~~c~  190 (285)
                      +++|++|+|++..+++.+...+.    ..++.|++|+|.+|.
T Consensus       125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~  166 (372)
T 3un9_A          125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP  166 (372)
T ss_dssp             HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred             HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC
Confidence            34566666666666665543332    245666666666663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.48  E-value=1.3e-05  Score=67.43  Aligned_cols=52  Identities=19%  Similarity=0.288  Sum_probs=24.3

Q ss_pred             CceeEEEEecCCCCCeEEE----eCCCceEEEEeccee----eeeecCCCceEEEEEEccc
Q 023267          202 LKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       202 ~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~  254 (285)
                      ++|+.|.++++. +..+..    ..|+|++|.+.+...    ...+..+++|+.++++...
T Consensus       175 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          175 RNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             cCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            345555555553 333311    235555555554432    1123445666666665443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.47  E-value=8.3e-06  Score=68.97  Aligned_cols=152  Identities=22%  Similarity=0.175  Sum_probs=96.5

Q ss_pred             hCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChh--HHHHHHh-cCCccceeecccCCCcceE-
Q 023267          120 DKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEE--VLHYLLC-YCPLLEVLTLKGAEKLIRI-  195 (285)
Q Consensus       120 ~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~--~l~~ll~-~cp~Le~L~L~~c~~~~~~-  195 (285)
                      .+++++|.+..+.-.      ...|..++ ...+++|++|+|++..+++.  .+..+.. ..++|++|+|.++.-.... 
T Consensus        94 l~~L~~L~L~~n~l~------~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~  166 (312)
T 1wwl_A           94 ISGLQELTLENLEVT------GTAPPPLL-EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC  166 (312)
T ss_dssp             TSCCCEEEEEEEBCB------SCCCCCSS-SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred             cCCccEEEccCCccc------chhHHHHH-HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence            479999999866422      13444332 25789999999999987664  2333221 2399999999987432111 


Q ss_pred             -EEeCCCCceeEEEEecCCCCCe------EE-EeCCCceEEEEecceee-------eeecCCCceEEEEEEccccchhhh
Q 023267          196 -RVSGPSLKLKYLELRDLPNLSN------LE-INAPNLVSFEFSAGELI-------VSFKHVPSLVEMSIEGDYCTYFVY  260 (285)
Q Consensus       196 -~i~~~~~~L~~L~i~~c~~l~~------l~-i~~p~L~~l~~~~~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~  260 (285)
                       .+ ...++|+.|.++++.-...      +. ...++|++|.+.+....       ..+..+++|+.++++........ 
T Consensus       167 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-  244 (312)
T 1wwl_A          167 EQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-  244 (312)
T ss_dssp             TTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-
T ss_pred             HHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-
Confidence             12 2346799999998862211      11 24689999998876542       12346799999999876543311 


Q ss_pred             HHhhhhcCCCcceEEEEEEEe
Q 023267          261 TLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       261 ~~~~ll~~~~~L~~L~L~~~~  281 (285)
                       .......+++|+.|+|+...
T Consensus       245 -~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          245 -GAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             -CCSCCCCCTTCCEEECTTSC
T ss_pred             -chhhhhhcCCCCEEECCCCc
Confidence             11223557899999887543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.44  E-value=2.6e-05  Score=64.39  Aligned_cols=121  Identities=18%  Similarity=0.177  Sum_probs=63.6

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPNL  225 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L  225 (285)
                      .+++|++|+|.+..++.-. ...+..+++|++|++.++.- ..+.  .-...++|+.|.++++. +..+..    ..++|
T Consensus        83 ~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSL  159 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             CCCCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCccc
Confidence            4677777777766554321 12345667777777766531 1111  01233567777777664 333321    34677


Q ss_pred             eEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          226 VSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       226 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      +.|.+.+....    ..+..+++|+.++++........   ...+..+++|+.|+|+
T Consensus       160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP---EGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECC
T ss_pred             ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC---HHHhccccCCCEEEec
Confidence            77776654331    12445677777777654432211   1224556677776664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.44  E-value=1.4e-05  Score=73.10  Aligned_cols=127  Identities=13%  Similarity=-0.016  Sum_probs=64.9

Q ss_pred             CCCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCC--------------C-
Q 023267          151 SSFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLP--------------N-  214 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~--------------~-  214 (285)
                      ..+++|++|++++..++... ....+.+++.|++|++.++.-......-...++|+.|.+.++.              . 
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence            45777888888776654332 1223556788888887776421111101122345555444331              0 


Q ss_pred             ---------CCeEE----EeCCCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267          215 ---------LSNLE----INAPNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       215 ---------l~~l~----i~~p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  276 (285)
                               +..+.    -..|+|+.|.+.+...     +..+..+++|+.++++.......   ....+..+++|+.|+
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL---SPTAFNSLSSLQVLN  500 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEE
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC---ChhhhhcccCCCEEe
Confidence                     11110    0245666666655432     23355667777777765443221   112345677788777


Q ss_pred             EEEE
Q 023267          277 LNLM  280 (285)
Q Consensus       277 L~~~  280 (285)
                      |+..
T Consensus       501 l~~n  504 (570)
T 2z63_A          501 MASN  504 (570)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            7654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.41  E-value=2.3e-05  Score=64.83  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=59.3

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeE---EE-eCCC
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNL---EI-NAPN  224 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l---~i-~~p~  224 (285)
                      ..+++|++|+|++..++...- ..+..++.|++|+|.++.- ..+..  -...++|+.|.+.++. +..+   .+ ..++
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~  125 (276)
T 2z62_A           49 FSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT  125 (276)
T ss_dssp             TTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred             ccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCcc-CccChhhhcCCccccEEECCCCC-ccccCchhcccCCC
Confidence            457778888887766543211 1245678888888877632 22111  1233567777777664 3222   12 4577


Q ss_pred             ceEEEEeccee-----eeeecCCCceEEEEEEcccc
Q 023267          225 LVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYC  255 (285)
Q Consensus       225 L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~  255 (285)
                      |++|.+.+...     +..+..+++|+.++++....
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            78887765432     22355678888888876554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.39  E-value=1.9e-05  Score=66.68  Aligned_cols=172  Identities=15%  Similarity=0.055  Sum_probs=100.3

Q ss_pred             CCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCC--CCCCCccEEEeeeEEeChhHH
Q 023267           94 KSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTT--SSFSSLVSLRLIDVDIPEEVL  171 (285)
Q Consensus        94 ~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~--~~~~~L~~L~L~~~~i~~~~l  171 (285)
                      ..++.+.++........-..+. ....+++++|.+....-.       ..|..+...  ..+++|++|+|++..++...-
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~Ls~N~l~-------~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~  166 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLL-EATGPDLNILNLRNVSWA-------TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC  166 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSS-SCCSCCCSEEEEESCBCS-------SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred             CCccEEEccCCcccchhHHHHH-HhcCCCccEEEccCCCCc-------chhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence            3577888876543210000000 012268888888754422       113222111  123889999999888754321


Q ss_pred             HHHHhcCCccceeecccCCCcceE----EE-eCCCCceeEEEEecCCCCCeEE-------EeCCCceEEEEecceee---
Q 023267          172 HYLLCYCPLLEVLTLKGAEKLIRI----RV-SGPSLKLKYLELRDLPNLSNLE-------INAPNLVSFEFSAGELI---  236 (285)
Q Consensus       172 ~~ll~~cp~Le~L~L~~c~~~~~~----~i-~~~~~~L~~L~i~~c~~l~~l~-------i~~p~L~~l~~~~~~~~---  236 (285)
                       ..+..+++|++|++.++.-.+.+    .+ ....++|+.|.+.++. +..+.       -..++|+.|.+.+....   
T Consensus       167 -~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          167 -EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             -TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             -HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence             23567899999999987633221    11 1345679999999885 54221       13489999998766432   


Q ss_pred             --eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          237 --VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       237 --~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                        ..+..+++|+.++++..........    +.  ++|+.|+|+...
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~----~~--~~L~~L~Ls~N~  285 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTGLKQVPKG----LP--AKLSVLDLSYNR  285 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCSSCCSS----CC--SEEEEEECCSSC
T ss_pred             chhhhhhcCCCCEEECCCCccChhhhh----cc--CCceEEECCCCC
Confidence              2334578999999987664421111    11  788988887544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.39  E-value=0.00015  Score=64.75  Aligned_cols=125  Identities=20%  Similarity=0.127  Sum_probs=67.2

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcce--EEEeCCCCceeEEEEecCCC--------------
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIR--IRVSGPSLKLKYLELRDLPN--------------  214 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~--~~i~~~~~~L~~L~i~~c~~--------------  214 (285)
                      ..+++|++|+|.+..++.-. ...+..++.|+.|+|.++.-...  ..+ ...++|+.|.+.+|..              
T Consensus       149 ~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          149 SGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             TTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             cCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccc
Confidence            46778888888887765432 23456778888888876532110  011 1223455555555432              


Q ss_pred             ---------CCeEE----EeCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEE
Q 023267          215 ---------LSNLE----INAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKL  277 (285)
Q Consensus       215 ---------l~~l~----i~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L  277 (285)
                               +..+.    -..++|+.|.+.+....    ..+.++++|++++|.+.......   ...+..+++|+.|+|
T Consensus       227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L  303 (477)
T 2id5_A          227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE---PYAFRGLNYLRVLNV  303 (477)
T ss_dssp             SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC---TTTBTTCTTCCEEEC
T ss_pred             cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC---HHHhcCcccCCEEEC
Confidence                     22221    02456666666554321    12445677777777654432211   123467788888887


Q ss_pred             EEE
Q 023267          278 NLM  280 (285)
Q Consensus       278 ~~~  280 (285)
                      +..
T Consensus       304 ~~N  306 (477)
T 2id5_A          304 SGN  306 (477)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.38  E-value=1.7e-05  Score=65.70  Aligned_cols=100  Identities=17%  Similarity=0.159  Sum_probs=52.8

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCC
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPN  224 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~  224 (285)
                      ..+++|++|+|.+..++.. ....+..++.|+.|++.++. +..+.-  -...++|+.|.+.++. +..+..    ..++
T Consensus       106 ~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~  182 (272)
T 3rfs_A          106 DKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQ  182 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             cCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCcc
Confidence            3466777777766665421 11224556777777776663 221110  1223456777776664 433321    3466


Q ss_pred             ceEEEEecceee----eeecCCCceEEEEEEcc
Q 023267          225 LVSFEFSAGELI----VSFKHVPSLVEMSIEGD  253 (285)
Q Consensus       225 L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~  253 (285)
                      |+.|.+.+....    ..+..+++|+.+++.+.
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            777766654431    12445677777777653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.38  E-value=7.9e-05  Score=66.64  Aligned_cols=124  Identities=15%  Similarity=0.107  Sum_probs=78.1

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLEI----NAPNL  225 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L  225 (285)
                      ..+++|++|+|.+..++.-. ...+.++++|++|+|.++.-.... ..-...++|+.|.+.++. +..+..    ..++|
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L  154 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSL  154 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTC
T ss_pred             hCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCC
Confidence            46788888888876654321 123567888888888876421110 001234578888888774 444421    46788


Q ss_pred             eEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          226 VSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       226 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      +.|.+.+....    ..+.++++|+.+++.........   ...+..+++|+.|+++.
T Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR---DYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC---TTCSCSCTTCCEEEEEC
T ss_pred             CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC---hhhcccCcccceeeCCC
Confidence            88888776432    23567888999888875543221   12356788999988875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.38  E-value=6.2e-05  Score=67.23  Aligned_cols=120  Identities=18%  Similarity=0.143  Sum_probs=59.5

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE---------------------eCCCCceeEEEEe
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV---------------------SGPSLKLKYLELR  210 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i---------------------~~~~~~L~~L~i~  210 (285)
                      .+++|++|++++..+++..-   +..++.|++|++.++.-.....+                     -...++|+.|.+.
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~  317 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY  317 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECC
T ss_pred             cCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECc
Confidence            45666666666655543221   45556666666655421100000                     1122345555555


Q ss_pred             cCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          211 DLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       211 ~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      +|. +..+.  -..|+|+.|.+.+....  ..+..+++|+.++++........    . +..+++|+.|+++..
T Consensus       318 ~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~----~-~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          318 FNN-ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLT----P-LANLTRITQLGLNDQ  385 (466)
T ss_dssp             SSC-CSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG----G-GTTCTTCCEEECCCE
T ss_pred             CCc-CCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccc----h-hhcCCCCCEEeccCC
Confidence            553 22211  13466666666554321  23456677777777654432211    1 567778887777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.37  E-value=7.3e-05  Score=64.17  Aligned_cols=146  Identities=17%  Similarity=0.132  Sum_probs=95.6

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--e
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--S  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~  198 (285)
                      +++++|.+....       .-.+|...  ...+++|++|+|++..+++.. ...+..+++|++|++.++.- ..+.-  -
T Consensus        52 ~~L~~L~l~~n~-------i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~  120 (353)
T 2z80_A           52 EAVKSLDLSNNR-------ITYISNSD--LQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYL-SNLSSSWF  120 (353)
T ss_dssp             TTCCEEECTTSC-------CCEECTTT--TTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC-SSCCHHHH
T ss_pred             ccCcEEECCCCc-------CcccCHHH--hccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcC-CcCCHhHh
Confidence            467777765332       12333321  356899999999987765421 12357789999999998742 22111  1


Q ss_pred             CCCCceeEEEEecCCCCCeEE-----EeCCCceEEEEecce-e-e---eeecCCCceEEEEEEccccchhhhHHhhhhcC
Q 023267          199 GPSLKLKYLELRDLPNLSNLE-----INAPNLVSFEFSAGE-L-I---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSF  268 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l~-----i~~p~L~~l~~~~~~-~-~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~  268 (285)
                      ...++|++|.+.++. +..+.     -..++|++|.+.+.. . .   ..+.++++|++++++.......   ....+..
T Consensus       121 ~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~  196 (353)
T 2z80_A          121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY---EPKSLKS  196 (353)
T ss_dssp             TTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE---CTTTTTT
T ss_pred             CCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc---CHHHHhc
Confidence            235689999999885 44432     257899999998752 2 2   2466799999999987654322   1233577


Q ss_pred             CCcceEEEEEEEe
Q 023267          269 LPQLRTLKLNLMA  281 (285)
Q Consensus       269 ~~~L~~L~L~~~~  281 (285)
                      +++|+.|+++...
T Consensus       197 l~~L~~L~l~~n~  209 (353)
T 2z80_A          197 IQNVSHLILHMKQ  209 (353)
T ss_dssp             CSEEEEEEEECSC
T ss_pred             cccCCeecCCCCc
Confidence            8999999998654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.37  E-value=7.7e-05  Score=66.62  Aligned_cols=140  Identities=16%  Similarity=0.195  Sum_probs=85.7

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP  200 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~  200 (285)
                      ++++.|++..+.-       ..+|.    ...+++|++|++.+..+.+..  . +..+++|++|++.+|.- ..+.--..
T Consensus        68 ~~L~~L~Ls~n~l-------~~~~~----~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~l-~~~~~~~~  132 (466)
T 1o6v_A           68 NNLTQINFSNNQL-------TDITP----LKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQI-TDIDPLKN  132 (466)
T ss_dssp             TTCCEEECCSSCC-------CCCGG----GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCCGGGTT
T ss_pred             cCCCEEECCCCcc-------CCchh----hhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCCC-CCChHHcC
Confidence            5777777654321       11221    346788888888877765432  2 67788888888887632 21111234


Q ss_pred             CCceeEEEEecCCCCCeEE--EeCCCceEEEEeccee-eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEE
Q 023267          201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGEL-IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKL  277 (285)
Q Consensus       201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L  277 (285)
                      .++|+.|.+.+|. +..+.  -..++|+.+.+..... ...+.++++|+.++++.......     ..+..+++|+.|++
T Consensus       133 l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l  206 (466)
T 1o6v_A          133 LTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIA  206 (466)
T ss_dssp             CTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEEC
T ss_pred             CCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEe
Confidence            5678888887774 33221  1467888888754322 12366788999999887654322     12577889999888


Q ss_pred             EEEe
Q 023267          278 NLMA  281 (285)
Q Consensus       278 ~~~~  281 (285)
                      +.+.
T Consensus       207 ~~n~  210 (466)
T 1o6v_A          207 TNNQ  210 (466)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            7543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.36  E-value=5.8e-05  Score=62.75  Aligned_cols=145  Identities=17%  Similarity=0.118  Sum_probs=88.0

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--e
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--S  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~  198 (285)
                      ++++.|.+......      -.++..  ....+++|++|+|.+..+++.. ...+..+++|++|++.++.- ..+..  -
T Consensus        80 ~~L~~L~l~~n~~l------~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~  149 (285)
T 1ozn_A           80 ALLEQLDLSDNAQL------RSVDPA--TFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNAL-QALPDDTF  149 (285)
T ss_dssp             TTCCEEECCSCTTC------CCCCTT--TTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTT
T ss_pred             cCCCEEeCCCCCCc------cccCHH--HhcCCcCCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcc-cccCHhHh
Confidence            67888887644211      112111  1345788888888887765421 22356788888888887642 11111  1


Q ss_pred             CCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267          199 GPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP  270 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~  270 (285)
                      ...++|+.|.+.++. +..+..    ..++|+.|.+.+....    ..+..+++|+.+++++.......   ...+..++
T Consensus       150 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~  225 (285)
T 1ozn_A          150 RDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP---TEALAPLR  225 (285)
T ss_dssp             TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---HHHHTTCT
T ss_pred             ccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC---HHHcccCc
Confidence            234578888888774 554432    3578888888765432    23556788888888876543221   23356788


Q ss_pred             cceEEEEEE
Q 023267          271 QLRTLKLNL  279 (285)
Q Consensus       271 ~L~~L~L~~  279 (285)
                      +|+.|+|+.
T Consensus       226 ~L~~L~l~~  234 (285)
T 1ozn_A          226 ALQYLRLND  234 (285)
T ss_dssp             TCCEEECCS
T ss_pred             ccCEEeccC
Confidence            888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.36  E-value=3.6e-05  Score=71.02  Aligned_cols=39  Identities=23%  Similarity=0.245  Sum_probs=23.0

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCC
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAE  190 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~  190 (285)
                      ..+++|++|++.+..+++.. ...+..+|.|++|++.++.
T Consensus       298 ~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          298 VGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             CSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCS
T ss_pred             cccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCC
Confidence            45677777777776655321 1224556667777666653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.34  E-value=0.00011  Score=59.45  Aligned_cols=145  Identities=12%  Similarity=0.043  Sum_probs=87.1

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceEEEe-
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS-  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~-  198 (285)
                      .+++.+.+....       .-.+|...  ...+++|++|+|.+.. ++.-. ...+.++++|++|++.+|+.+..+.-. 
T Consensus        31 ~~l~~L~l~~n~-------l~~i~~~~--~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           31 PSTQTLKLIETH-------LRTIPSHA--FSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             TTCCEEEEESCC-------CSEECTTT--TTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             CcccEEEEeCCc-------ceEECHHH--ccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            478888876443       22344322  3467899999998774 43211 112467899999999886666554311 


Q ss_pred             -CCCCceeEEEEecCCCCCeEE--EeCCCce---EEEEecc-ee-e---eeecCCCceE-EEEEEccccchhhhHHhhhh
Q 023267          199 -GPSLKLKYLELRDLPNLSNLE--INAPNLV---SFEFSAG-EL-I---VSFKHVPSLV-EMSIEGDYCTYFVYTLHQFS  266 (285)
Q Consensus       199 -~~~~~L~~L~i~~c~~l~~l~--i~~p~L~---~l~~~~~-~~-~---~~~~~~~~L~-~l~l~~~~~~~~~~~~~~ll  266 (285)
                       ...++|+.|.+.++. +..+.  ...++|+   ++.+.+. .. .   ..+.++++|+ +++++.........   ..+
T Consensus       101 f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~---~~~  176 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG---YAF  176 (239)
T ss_dssp             EECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT---TTT
T ss_pred             hCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH---hhc
Confidence             134678888888874 43332  1345666   8888775 33 1   2256788899 88887655432211   122


Q ss_pred             cCCCcceEEEEEEE
Q 023267          267 SFLPQLRTLKLNLM  280 (285)
Q Consensus       267 ~~~~~L~~L~L~~~  280 (285)
                      .. ++|+.|+|+..
T Consensus       177 ~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          177 NG-TKLDAVYLNKN  189 (239)
T ss_dssp             TT-CEEEEEECTTC
T ss_pred             CC-CCCCEEEcCCC
Confidence            33 68888877543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.34  E-value=4.1e-05  Score=66.07  Aligned_cols=11  Identities=27%  Similarity=0.250  Sum_probs=6.6

Q ss_pred             CCceEEEEEec
Q 023267          121 KRVQRLELDFS  131 (285)
Q Consensus       121 ~~v~~L~l~~~  131 (285)
                      +++++|.+..+
T Consensus        80 ~~L~~L~Ls~n   90 (362)
T 3goz_A           80 ANVTSLNLSGN   90 (362)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCccEEECcCC
Confidence            56776666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.33  E-value=6.2e-05  Score=67.19  Aligned_cols=117  Identities=17%  Similarity=0.163  Sum_probs=55.8

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE-eCCCceEEEE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI-NAPNLVSFEF  230 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~l~~  230 (285)
                      .+++|++|+|++..+++-.    +..++.|++|++.++. +..+.+. ..++|+.|.+.++.....+.+ ..++|+.|.+
T Consensus       104 ~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~-l~~l~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  177 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNT-LTEIDVS-HNTQLTELDCHLNKKITKLDVTPQTQLTTLDC  177 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSC-CSCCCCT-TCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred             CCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCc-cceeccc-cCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence            3444444444444433311    3444555555554432 1111111 233455555555533333322 3456666666


Q ss_pred             eccee-eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          231 SAGEL-IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       231 ~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      .+... .+.+..+++|+.++++.......  +    +..+++|+.|+++..
T Consensus       178 s~n~l~~l~l~~l~~L~~L~l~~N~l~~~--~----l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          178 SFNKITELDVSQNKLLNRLNCDTNNITKL--D----LNQNIQLTFLDCSSN  222 (457)
T ss_dssp             CSSCCCCCCCTTCTTCCEEECCSSCCSCC--C----CTTCTTCSEEECCSS
T ss_pred             CCCccceeccccCCCCCEEECcCCcCCee--c----cccCCCCCEEECcCC
Confidence            55432 22355667777777765443321  1    456777777777643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.31  E-value=0.00012  Score=59.15  Aligned_cols=171  Identities=12%  Similarity=0.068  Sum_probs=101.8

Q ss_pred             CCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeE-EeChhHHH
Q 023267           94 KSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDV-DIPEEVLH  172 (285)
Q Consensus        94 ~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~-~i~~~~l~  172 (285)
                      ..++.+.++........ ...+  ...++++.+.+.....      .-.++...+  ..+++|++|+|.++ .++.-. .
T Consensus        31 ~~l~~L~l~~n~l~~i~-~~~~--~~l~~L~~L~l~~n~~------l~~i~~~~f--~~l~~L~~L~l~~~n~l~~i~-~   98 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP-SHAF--SNLPNISRIYVSIDVT------LQQLESHSF--YNLSKVTHIEIRNTRNLTYID-P   98 (239)
T ss_dssp             TTCCEEEEESCCCSEEC-TTTT--TTCTTCCEEEEECCSS------CCEECTTTE--ESCTTCCEEEEEEETTCCEEC-T
T ss_pred             CcccEEEEeCCcceEEC-HHHc--cCCCCCcEEeCCCCCC------cceeCHhHc--CCCcCCcEEECCCCCCeeEcC-H
Confidence            35788888765432200 0011  1136899999875431      123443222  46799999999983 343211 1


Q ss_pred             HHHhcCCccceeecccCCCcceEEEeCCCCcee---EEEEecCCCCCeEEE----eCCCce-EEEEecceee-e--eecC
Q 023267          173 YLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLK---YLELRDLPNLSNLEI----NAPNLV-SFEFSAGELI-V--SFKH  241 (285)
Q Consensus       173 ~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~---~L~i~~c~~l~~l~i----~~p~L~-~l~~~~~~~~-~--~~~~  241 (285)
                      ..+.++++|++|++.++.-.. +.--....+|+   .|.+.++..+..+..    ..++|+ .+.+.+.... +  ....
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~  177 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN  177 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence            235679999999999864211 11012334555   999999844666543    468899 9998776542 1  1113


Q ss_pred             CCceEEEEEEccc-cchhhhHHhhhhcCC-CcceEEEEEEE
Q 023267          242 VPSLVEMSIEGDY-CTYFVYTLHQFSSFL-PQLRTLKLNLM  280 (285)
Q Consensus       242 ~~~L~~l~l~~~~-~~~~~~~~~~ll~~~-~~L~~L~L~~~  280 (285)
                      .++|+++++.... .....   ...+..+ ++|+.|+++..
T Consensus       178 ~~~L~~L~L~~n~~l~~i~---~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          178 GTKLDAVYLNKNKYLTVID---KDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             TCEEEEEECTTCTTCCEEC---TTTTTTCSBCCSEEECTTC
T ss_pred             CCCCCEEEcCCCCCcccCC---HHHhhccccCCcEEECCCC
Confidence            3799999998752 43221   1234667 89999988754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.29  E-value=3.3e-05  Score=63.69  Aligned_cols=120  Identities=21%  Similarity=0.190  Sum_probs=85.5

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE-EeCCCceEEEE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE-INAPNLVSFEF  230 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~-i~~p~L~~l~~  230 (285)
                      .+++|+.|++.+..+++-.   -+..++.|++|+|.++.- ..+.--...++|+.|.++++. +..+. +..++|+.|.+
T Consensus        39 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L  113 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFL  113 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEEC
T ss_pred             hcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEEc
Confidence            4689999999998876532   367899999999998742 211113345789999999885 44331 22289999999


Q ss_pred             ecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          231 SAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       231 ~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      .+....  ..+..+++|+.++++.......     ..+..+++|+.|+|+...
T Consensus       114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          114 DNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             CSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSC
T ss_pred             cCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCc
Confidence            876542  2467899999999988665432     136788999999887543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.27  E-value=0.00022  Score=62.04  Aligned_cols=55  Identities=15%  Similarity=0.147  Sum_probs=30.0

Q ss_pred             CCceEEEEeccee--eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          223 PNLVSFEFSAGEL--IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       223 p~L~~l~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      ++|+.|.+.+...  ...+..+++|++++++.......   ....+..+++|+.|+|+..
T Consensus       226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n  282 (390)
T 3o6n_A          226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI---MYHPFVKMQRLERLYISNN  282 (390)
T ss_dssp             SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE---ESGGGTTCSSCCEEECCSS
T ss_pred             ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc---ChhHccccccCCEEECCCC
Confidence            4555555554432  12345567777777776543221   1123456777887777643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.27  E-value=3.9e-05  Score=65.22  Aligned_cols=121  Identities=12%  Similarity=0.105  Sum_probs=55.4

Q ss_pred             CCCCccEEEeeeEEeChhH-HHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267          152 SFSSLVSLRLIDVDIPEEV-LHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI----NAPNLV  226 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~-l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~  226 (285)
                      .+++|++|++.+..++..+ ....+..++.|++|++.++.- ..+.. ...++|+.|.+.++. +..+..    ..++|+
T Consensus       143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~  219 (330)
T 1xku_A          143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQ-GLPPSLTELHLDGNK-ITKVDAASLKGLNNLA  219 (330)
T ss_dssp             TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCS-SCCTTCSEEECTTSC-CCEECTGGGTTCTTCC
T ss_pred             CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCc-cccccCCEEECCCCc-CCccCHHHhcCCCCCC
Confidence            3445555555544443221 112234455555555554421 11000 011345666666553 333321    345666


Q ss_pred             EEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          227 SFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      +|.+.+....    ..+..+++|++++++......    +...+..+++|+.|+|+.
T Consensus       220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~L~~L~l~~  272 (330)
T 1xku_A          220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK----VPGGLADHKYIQVVYLHN  272 (330)
T ss_dssp             EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS----CCTTTTTCSSCCEEECCS
T ss_pred             EEECCCCcCceeChhhccCCCCCCEEECCCCcCcc----CChhhccCCCcCEEECCC
Confidence            6666554321    124456667777666544321    111235566677666653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.27  E-value=2.3e-05  Score=64.73  Aligned_cols=145  Identities=20%  Similarity=0.165  Sum_probs=94.4

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--Ee
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VS  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~  198 (285)
                      +++++|.+....       .-.+|..  ....+++|++|+|.+..++.- -..++..++.|++|+|.++.- ..+.  +-
T Consensus        37 ~~l~~L~l~~n~-------l~~~~~~--~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~  105 (270)
T 2o6q_A           37 ADTKKLDLQSNK-------LSSLPSK--AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKL-QALPIGVF  105 (270)
T ss_dssp             TTCSEEECCSSC-------CSCCCTT--SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCC-CCCCTTTT
T ss_pred             CCCCEEECcCCC-------CCeeCHH--HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcC-CcCCHhHc
Confidence            467777765432       1223322  134689999999998776532 123457789999999998742 2211  11


Q ss_pred             CCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267          199 GPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP  270 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~  270 (285)
                      ...++|+.|.+.++. +..+..    ..++|++|.+.+....    ..+..+++|++++++.........   ..+..++
T Consensus       106 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~  181 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE---GAFDKLT  181 (270)
T ss_dssp             TTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCT
T ss_pred             ccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh---hHhccCC
Confidence            234679999999875 444432    4689999999876542    225678999999998765433211   2356789


Q ss_pred             cceEEEEEEE
Q 023267          271 QLRTLKLNLM  280 (285)
Q Consensus       271 ~L~~L~L~~~  280 (285)
                      +|+.|+|+..
T Consensus       182 ~L~~L~L~~N  191 (270)
T 2o6q_A          182 ELKTLKLDNN  191 (270)
T ss_dssp             TCCEEECCSS
T ss_pred             CcCEEECCCC
Confidence            9999998754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.27  E-value=8.9e-05  Score=62.97  Aligned_cols=124  Identities=18%  Similarity=0.200  Sum_probs=83.1

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcce-E--EEeCCCCceeEEEEecCCCCCeEEE-eCCCceEE
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIR-I--RVSGPSLKLKYLELRDLPNLSNLEI-NAPNLVSF  228 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~-~--~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~l  228 (285)
                      +++|++|++.+..++... ...+..++.|+.|++.++.-... .  ..-...++|+.|.+.++. +..+.. ..++|++|
T Consensus       120 ~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L  197 (330)
T 1xku_A          120 PKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTEL  197 (330)
T ss_dssp             CTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEE
T ss_pred             cccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEE
Confidence            378888888887765432 33467899999999988743110 1  011234678999998885 444321 23899999


Q ss_pred             EEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          229 EFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       229 ~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      .+.+....    ..+..+++|+.++++........   ...+..+++|+.|+|+...
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD---NGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC---TTTGGGSTTCCEEECCSSC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC---hhhccCCCCCCEEECCCCc
Confidence            99876542    34678999999999876543321   1235678999999987654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.23  E-value=3.3e-05  Score=66.72  Aligned_cols=182  Identities=15%  Similarity=0.086  Sum_probs=106.4

Q ss_pred             CCceEEEEeeCCCcccHHHHHHHHHh-C-CceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhH--
Q 023267           95 SLQQLRICYPVNSDYDVDSWVQFAVD-K-RVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEV--  170 (285)
Q Consensus        95 ~l~~l~l~~~~~~~~~~~~wl~~~~~-~-~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~--  170 (285)
                      .++.+.++.................. + ++++|.+..+.-...+.  ..+...+  ...+++|++|+|++..+++..  
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~~~l--~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS--DELVQIL--AAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH--HHHHHHH--HTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH--HHHHHHH--hccCCCccEEECcCCcCChHHHH
Confidence            37888876544322222222233222 4 79999887543221110  0111100  012489999999999987644  


Q ss_pred             -HHHHHhcC-CccceeecccCCCcceEE-------EeCCCCceeEEEEecCCCCCeEEE--------eC-CCceEEEEec
Q 023267          171 -LHYLLCYC-PLLEVLTLKGAEKLIRIR-------VSGPSLKLKYLELRDLPNLSNLEI--------NA-PNLVSFEFSA  232 (285)
Q Consensus       171 -l~~ll~~c-p~Le~L~L~~c~~~~~~~-------i~~~~~~L~~L~i~~c~~l~~l~i--------~~-p~L~~l~~~~  232 (285)
                       +...+..+ +.|++|+|.++.- +...       +.....+|+.|.+++|. +.....        .. ++|++|.+.+
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecC
Confidence             45556666 8999999999852 2211       11112479999999985 442211        23 4999999987


Q ss_pred             ceee--------eeecCC-CceEEEEEEccccchh-hhHHhhhhcC-CCcceEEEEEEEee
Q 023267          233 GELI--------VSFKHV-PSLVEMSIEGDYCTYF-VYTLHQFSSF-LPQLRTLKLNLMAV  282 (285)
Q Consensus       233 ~~~~--------~~~~~~-~~L~~l~l~~~~~~~~-~~~~~~ll~~-~~~L~~L~L~~~~~  282 (285)
                      ....        -.+..+ ++|+.++|+....... ...+...+.. .++|+.|+|+...+
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            6431        123345 5999999997664331 2234444444 56999999986544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.23  E-value=9.8e-05  Score=71.01  Aligned_cols=147  Identities=19%  Similarity=0.152  Sum_probs=85.1

Q ss_pred             CCceEEEEEecCCCCCCCceeec-CccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE--EE
Q 023267          121 KRVQRLELDFSESKTEGHELHTF-SPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI--RV  197 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~-p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--~i  197 (285)
                      +++++|++....-       -.+ |..   ...+++|++|+|++..+...--...+..+++|+.|+|.++.- ..+  ..
T Consensus        24 ~~l~~LdLs~N~i-------~~i~~~~---~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-~~~~p~~   92 (844)
T 3j0a_A           24 NTTERLLLSFNYI-------RTVTASS---FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-YFLHPDA   92 (844)
T ss_dssp             TTCCEEEEESCCC-------CEECSSS---CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-CEECTTS
T ss_pred             CCcCEEECCCCcC-------CccChhH---CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-cccCHhH
Confidence            5777887765431       122 222   346788888888876321110012246788888888887742 211  11


Q ss_pred             eCCCCceeEEEEecCCCCCe-E-----EEeCCCceEEEEecceee-----eeecCCCceEEEEEEccccchh-hhHHhhh
Q 023267          198 SGPSLKLKYLELRDLPNLSN-L-----EINAPNLVSFEFSAGELI-----VSFKHVPSLVEMSIEGDYCTYF-VYTLHQF  265 (285)
Q Consensus       198 ~~~~~~L~~L~i~~c~~l~~-l-----~i~~p~L~~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~-~~~~~~l  265 (285)
                      -....+|+.|.+++|. +.. +     .-..++|+.|.+++....     ..++++++|+.++++...+... ..++..+
T Consensus        93 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             ccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            1234578888888875 332 1     125678888888765431     2366788888888887654322 2222222


Q ss_pred             hcCCCcceEEEEEEEe
Q 023267          266 SSFLPQLRTLKLNLMA  281 (285)
Q Consensus       266 l~~~~~L~~L~L~~~~  281 (285)
                      ..  ++|+.|+++...
T Consensus       172 ~~--~~L~~L~L~~n~  185 (844)
T 3j0a_A          172 QG--KTLSFFSLAANS  185 (844)
T ss_dssp             HH--CSSCCCEECCSB
T ss_pred             cC--CccceEECCCCc
Confidence            11  678888776543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.22  E-value=2.6e-05  Score=69.29  Aligned_cols=179  Identities=19%  Similarity=0.158  Sum_probs=110.4

Q ss_pred             CCceEEEEeeCCCcccHHHHHHHH-HhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHH
Q 023267           95 SLQQLRICYPVNSDYDVDSWVQFA-VDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHY  173 (285)
Q Consensus        95 ~l~~l~l~~~~~~~~~~~~wl~~~-~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~  173 (285)
                      .++.+.++.....   -..|.... ..++++.+.+..+.-..  .....++..   ...+++|++|+|++..+++.+...
T Consensus         4 ~l~~L~Ls~~~l~---~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~---l~~~~~L~~L~Ls~n~l~~~~~~~   75 (461)
T 1z7x_W            4 DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTE--ARCKDISSA---LRVNPALAELNLRSNELGDVGVHC   75 (461)
T ss_dssp             EEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCH--HHHHHHHHH---HHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             cceehhhhhcccC---chhHHHHHhhcCCccEEEccCCCCCH--HHHHHHHHH---HHhCCCcCEEeCCCCcCChHHHHH
Confidence            3556666544322   22344422 33799999998654210  001122332   235799999999999998888888


Q ss_pred             HHhcCC----ccceeecccCCCcc----e-EEEeCCCCceeEEEEecCCCCCeEEE---------eCCCceEEEEeccee
Q 023267          174 LLCYCP----LLEVLTLKGAEKLI----R-IRVSGPSLKLKYLELRDLPNLSNLEI---------NAPNLVSFEFSAGEL  235 (285)
Q Consensus       174 ll~~cp----~Le~L~L~~c~~~~----~-~~i~~~~~~L~~L~i~~c~~l~~l~i---------~~p~L~~l~~~~~~~  235 (285)
                      +...++    .|++|+|.+|.--.    . ...-...++|+.|.++++. +....+         ..++|++|.+.+...
T Consensus        76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  154 (461)
T 1z7x_W           76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL  154 (461)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence            888777    79999999985221    1 1111345689999999886 432111         145799999877643


Q ss_pred             e--------eeecCCCceEEEEEEccccchh-hhHHhh-hhcCCCcceEEEEEEEee
Q 023267          236 I--------VSFKHVPSLVEMSIEGDYCTYF-VYTLHQ-FSSFLPQLRTLKLNLMAV  282 (285)
Q Consensus       236 ~--------~~~~~~~~L~~l~l~~~~~~~~-~~~~~~-ll~~~~~L~~L~L~~~~~  282 (285)
                      .        -.+..+++|+++++++...... ...+.. +....++|+.|+|+.+.+
T Consensus       155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  211 (461)
T 1z7x_W          155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV  211 (461)
T ss_dssp             BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred             CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence            2        1244579999999997664321 122222 223567999999876543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.20  E-value=0.00012  Score=63.21  Aligned_cols=35  Identities=34%  Similarity=0.421  Sum_probs=27.0

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHh-cCCccceeecc
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLC-YCPLLEVLTLK  187 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~-~cp~Le~L~L~  187 (285)
                      .++|++|+|..+.++++.+..+.. .+|+|++|+|.
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            578888888877788777776653 68888888875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.20  E-value=0.00012  Score=66.12  Aligned_cols=125  Identities=12%  Similarity=0.101  Sum_probs=80.2

Q ss_pred             CCCCCccEEEeeeEEeChh-HHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCe-EEEe-CCCc
Q 023267          151 SSFSSLVSLRLIDVDIPEE-VLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSN-LEIN-APNL  225 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~-l~i~-~p~L  225 (285)
                      ..+++|++|+|++..+++- .+...+..+++|+.|+++++.-...+.  .-...++|+.|.++++. +.. +... .++|
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~L  423 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLPPRI  423 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGSCCTTC
T ss_pred             ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhhhcccC
Confidence            5678888888888887652 345567788999999998864322111  11233578888888875 321 1111 2688


Q ss_pred             eEEEEecceee---eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          226 VSFEFSAGELI---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       226 ~~l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      +.|.+.+....   ..+..+++|+.+++++.........   .+..+++|+.|+++.
T Consensus       424 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          424 KVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCS
T ss_pred             CEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH---HhccCCcccEEECcC
Confidence            88888776542   2344788999999987654422111   356788888888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.19  E-value=4.7e-05  Score=67.59  Aligned_cols=103  Identities=13%  Similarity=0.067  Sum_probs=58.2

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeE------EEeC
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNL------EINA  222 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l------~i~~  222 (285)
                      ..+++|++|+|.+..+....-...+.++++|++|+|.++.- ..+.  .-...++|++|.+.+|. +...      .-..
T Consensus        51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l  128 (455)
T 3v47_A           51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPL  128 (455)
T ss_dssp             SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTC
T ss_pred             ccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCCEEeCCCCC-CCccccCcccccCc
Confidence            45777888888776543211112355678888888877642 2111  01223567777777775 3321      1135


Q ss_pred             CCceEEEEecceee----ee-ecCCCceEEEEEEcccc
Q 023267          223 PNLVSFEFSAGELI----VS-FKHVPSLVEMSIEGDYC  255 (285)
Q Consensus       223 p~L~~l~~~~~~~~----~~-~~~~~~L~~l~l~~~~~  255 (285)
                      ++|++|.+.+....    .. +.++++|+.++++....
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            77777777665431    11 55677777777766543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.18  E-value=5.5e-05  Score=59.79  Aligned_cols=98  Identities=18%  Similarity=0.130  Sum_probs=41.7

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNL  225 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L  225 (285)
                      .+++|++|+|.+..++.- ....+..++.|++|+|.++.- ..+.-  -...++|+.|.+.++. +..+.-    ..++|
T Consensus        50 ~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A           50 ELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQL  126 (208)
T ss_dssp             TCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             ccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcC
Confidence            455566666655444321 111234556666666655421 11100  0122345555555543 322211    23555


Q ss_pred             eEEEEecceee----eeecCCCceEEEEEEc
Q 023267          226 VSFEFSAGELI----VSFKHVPSLVEMSIEG  252 (285)
Q Consensus       226 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~  252 (285)
                      ++|.+.+....    ..+..+++|+.+++.+
T Consensus       127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A          127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCccceeCHHHhccCCCccEEEecC
Confidence            55555443221    1133455555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.17  E-value=8.6e-05  Score=64.60  Aligned_cols=116  Identities=19%  Similarity=0.184  Sum_probs=70.7

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE---eCCCceE
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI---NAPNLVS  227 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i---~~p~L~~  227 (285)
                      +++|+.|+|.+..+++.   ..+..+|.|++|++.++.- ..+..  -...++|+.|.+.++. +..+..   ..|+|+.
T Consensus       225 ~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~  299 (390)
T 3o6n_A          225 NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKV  299 (390)
T ss_dssp             CSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC-CEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCE
T ss_pred             cccccEEECCCCCCccc---HHHcCCCCccEEECCCCcC-CCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCE
Confidence            45677777777776554   2466788888888887642 22211  1234567888888775 555543   3577888


Q ss_pred             EEEecceee---eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          228 FEFSAGELI---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       228 l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      |.+.+....   ..+..+++|+.+++++......  .    +..+++|+.|+++.
T Consensus       300 L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~--~----~~~~~~L~~L~l~~  348 (390)
T 3o6n_A          300 LDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--K----LSTHHTLKNLTLSH  348 (390)
T ss_dssp             EECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC--C----CCTTCCCSEEECCS
T ss_pred             EECCCCcceecCccccccCcCCEEECCCCcccee--C----chhhccCCEEEcCC
Confidence            877765432   2234567777777776554321  1    45677777777653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.17  E-value=5.7e-06  Score=65.12  Aligned_cols=99  Identities=18%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFE  229 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~  229 (285)
                      .+++|+.|+|.+..++.  +...+..+|.|+.|++.++.                        +..+.  ...++|+.|.
T Consensus        68 ~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~------------------------l~~l~~~~~l~~L~~L~  121 (198)
T 1ds9_A           68 GMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ------------------------IASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEE------------------------CCCHHHHHHHHHSSEEE
T ss_pred             cCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCc------------------------CCcCCccccCCCCCEEE
Confidence            45566666666666542  33334445666666665542                        11110  0234555555


Q ss_pred             Eecceee-----eeecCCCceEEEEEEccccchh-------hhHHhhhhcCCCcceEEE
Q 023267          230 FSAGELI-----VSFKHVPSLVEMSIEGDYCTYF-------VYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       230 ~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~-------~~~~~~ll~~~~~L~~L~  276 (285)
                      +.+....     ..+..+++|+.+++.+......       ..-....+..+++|+.|+
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            5443321     1356778888888876543211       112234567788888775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.17  E-value=1.7e-05  Score=70.60  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=16.1

Q ss_pred             CccEEEeeeEEeChhH---HHHHHhcCCccceeecccC
Q 023267          155 SLVSLRLIDVDIPEEV---LHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       155 ~L~~L~L~~~~i~~~~---l~~ll~~cp~Le~L~L~~c  189 (285)
                      +|++|+|+++.+++.+   +...+..|+.|++|++.++
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence            4555555544444433   2233334555555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.15  E-value=8.2e-06  Score=68.92  Aligned_cols=126  Identities=17%  Similarity=0.127  Sum_probs=70.9

Q ss_pred             CCCccEEEeeeEEeChhHHHHHH-hcCCccceeecccCCCcce------EEEeCCCCceeEEEEecCCCCCeEE----Ee
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLL-CYCPLLEVLTLKGAEKLIR------IRVSGPSLKLKYLELRDLPNLSNLE----IN  221 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll-~~cp~Le~L~L~~c~~~~~------~~i~~~~~~L~~L~i~~c~~l~~l~----i~  221 (285)
                      +++|++|+|.+..+++..-..++ ..++.|++|+|.++.-...      ..+. ..++|+.|.++++. +..+.    -.
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~~~~  167 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAH-SPAFSCEQVRA  167 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCS-SCCCCTTSCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCC-cchhhHHHhcc
Confidence            35678888877765543222222 6677888888877642210      1111 24567888888775 33322    14


Q ss_pred             CCCceEEEEeccee--------eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          222 APNLVSFEFSAGEL--------IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       222 ~p~L~~l~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      .++|++|.+++...        ...+..+++|+.++++.............++..+++|+.|+|+..
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence            67788888776532        112246778888888766553322222334456667777766543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.15  E-value=5.7e-05  Score=61.65  Aligned_cols=100  Identities=21%  Similarity=0.243  Sum_probs=48.0

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNL  225 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L  225 (285)
                      .+++|++|+|++..++.-. ...+..+++|++|+|.++. +..+.-  -...++|+.|.+.++. +..+..    ..++|
T Consensus        81 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L  157 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNL  157 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             cCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCC
Confidence            4566666666665544211 1224456666666666542 111110  0123456666666553 333321    23566


Q ss_pred             eEEEEecceee----eeecCCCceEEEEEEccc
Q 023267          226 VSFEFSAGELI----VSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       226 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~  254 (285)
                      +.|.+.+....    ..+..+++|+.+++++..
T Consensus       158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            66666554321    123455666666665443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.13  E-value=5.8e-05  Score=63.13  Aligned_cols=120  Identities=17%  Similarity=0.078  Sum_probs=63.6

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCC
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPN  224 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~  224 (285)
                      ..+++|++|+|++..++.  +...+..++.|+.|++.++.- ..+.  .-...++|+.|.+.++. +..+..    ..++
T Consensus        74 ~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  149 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPK  149 (290)
T ss_dssp             SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTT
T ss_pred             CCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccC
Confidence            356777777777666542  222345667777777776531 1111  01223467777777664 433321    3466


Q ss_pred             ceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          225 LVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       225 L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      |+.|.+.+....    -.+..+++|+.++++..........    +...++|+.|.|+
T Consensus       150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~----~~~~~~L~~l~L~  203 (290)
T 1p9a_G          150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLH  203 (290)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCCCSEEECC
T ss_pred             CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh----hcccccCCeEEeC
Confidence            777777655432    1234567777777776554322111    2344566666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.13  E-value=0.00018  Score=60.68  Aligned_cols=148  Identities=15%  Similarity=0.095  Sum_probs=70.2

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE--EEe
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI--RVS  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--~i~  198 (285)
                      ++++.|.+....-.      ..+|..+   ..+++|++|+|++..+++. +...+..+++|++|++.++.-...+  .+.
T Consensus       101 ~~L~~L~Ls~n~l~------~~~p~~~---~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  170 (313)
T 1ogq_A          101 TQLHYLYITHTNVS------GAIPDFL---SQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYG  170 (313)
T ss_dssp             TTCSEEEEEEECCE------EECCGGG---GGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred             CCCCEEECcCCeeC------CcCCHHH---hCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence            56777776644311      1333332   2456777777776665421 1122455677777777665321110  111


Q ss_pred             CCCCceeEEEEecCCC----------------------CCeE----EEeCCCceEEEEecceee---eeecCCCceEEEE
Q 023267          199 GPSLKLKYLELRDLPN----------------------LSNL----EINAPNLVSFEFSAGELI---VSFKHVPSLVEMS  249 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~----------------------l~~l----~i~~p~L~~l~~~~~~~~---~~~~~~~~L~~l~  249 (285)
                      ...++|+.|.+.++.-                      +...    .-..++|+.|.+.+....   ..+..+++|++++
T Consensus       171 ~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~  250 (313)
T 1ogq_A          171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD  250 (313)
T ss_dssp             CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEE
T ss_pred             hhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEE
Confidence            1111445555444320                      1100    012455666665544321   1234566777777


Q ss_pred             EEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          250 IEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       250 l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      ++......   .+...+..+++|+.|+|+...
T Consensus       251 Ls~N~l~~---~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          251 LRNNRIYG---TLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             CCSSCCEE---CCCGGGGGCTTCCEEECCSSE
T ss_pred             CcCCcccC---cCChHHhcCcCCCEEECcCCc
Confidence            76544321   112234567778877776543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.12  E-value=0.0004  Score=63.30  Aligned_cols=123  Identities=20%  Similarity=0.165  Sum_probs=65.1

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe---CCCCceeEEEEecCCCCCeEE---EeCCCc
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS---GPSLKLKYLELRDLPNLSNLE---INAPNL  225 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~---~~~~~L~~L~i~~c~~l~~l~---i~~p~L  225 (285)
                      .+++|++|++.+..+....-   ...+|.|++|++.++.-.....+.   ...++|+.|.+.+|. +..+.   ...++|
T Consensus       323 ~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L  398 (570)
T 2z63_A          323 KLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL  398 (570)
T ss_dssp             BCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred             cccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCC
Confidence            34555555555544322110   045666666666665321111111   134566777777664 33322   246777


Q ss_pred             eEEEEecceee-----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          226 VSFEFSAGELI-----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       226 ~~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      ++|.+.+....     ..+.++++|+.++++.......   ....+..+++|+.|+|+...
T Consensus       399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~  456 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMAGNS  456 (570)
T ss_dssp             CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC---CTTTTTTCTTCCEEECTTCE
T ss_pred             CEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc---chhhhhcCCcCcEEECcCCc
Confidence            77777665432     2345677777777766443221   22345678888888876544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.09  E-value=2.6e-05  Score=59.48  Aligned_cols=98  Identities=22%  Similarity=0.189  Sum_probs=43.5

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEE-----EeCCCce
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLE-----INAPNLV  226 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~-----i~~p~L~  226 (285)
                      +++|+.|+|.+..+++.   ..+..++.|+.|++.++.-...+ .+....++|+.|.+.++. +..+.     ...|+|+
T Consensus        48 l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCC
T ss_pred             CCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCC
Confidence            44555555554444332   22344455555555444211100 001112344555554442 22221     1345666


Q ss_pred             EEEEeccee---e----eeecCCCceEEEEEEccc
Q 023267          227 SFEFSAGEL---I----VSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       227 ~l~~~~~~~---~----~~~~~~~~L~~l~l~~~~  254 (285)
                      .|.+.+...   .    ..+..+++|+.+++....
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            666654432   1    145567788877776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.08  E-value=0.00019  Score=59.93  Aligned_cols=123  Identities=19%  Similarity=0.159  Sum_probs=72.2

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI----NAPNLV  226 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~  226 (285)
                      ..+++|++|+|.+..++.-..   ...++.|+.|++.++.-..-...-...++|+.|.++++. +..+..    ..++|+
T Consensus        52 ~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~  127 (290)
T 1p9a_G           52 MPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQ  127 (290)
T ss_dssp             TTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCC
T ss_pred             hcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCC
Confidence            456777777777666543221   156777777777765321111111234567777777764 444321    357788


Q ss_pred             EEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          227 SFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      +|.+.+....    -.+..+++|+.++++........   ...+..+++|+.|+|+..
T Consensus       128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP---AGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCccChhhcccccCCCEEECCCCcCCccC---HHHhcCcCCCCEEECCCC
Confidence            8887765432    12456788888888765543221   233567888888887643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.07  E-value=0.00044  Score=63.80  Aligned_cols=54  Identities=15%  Similarity=0.163  Sum_probs=29.0

Q ss_pred             CCceEEEEeccee--eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          223 PNLVSFEFSAGEL--IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       223 p~L~~l~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      ++|+.|.+.+...  ...+..+++|+.++|++......   ....+..+++|+.|+|+.
T Consensus       232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI---MYHPFVKMQRLERLYISN  287 (597)
T ss_dssp             SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE---ESGGGTTCSSCCEEECTT
T ss_pred             CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC---CHHHhcCccCCCEEECCC
Confidence            3455555544332  12345667777777776543221   112245677777777754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.07  E-value=0.00013  Score=67.20  Aligned_cols=102  Identities=19%  Similarity=0.200  Sum_probs=56.4

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEE---E-eCCC
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLE---I-NAPN  224 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~---i-~~p~  224 (285)
                      ..+++|++|+|++..++.-. ...+.++++|++|+|.++. +..+.-.  ....+|++|.+.++. +..+.   + ..++
T Consensus        73 ~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~  149 (635)
T 4g8a_A           73 FSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT  149 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred             hCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcc
Confidence            45677777777776543210 1124567777777777763 2222111  234567777777664 33332   1 3567


Q ss_pred             ceEEEEeccee-----eeeecCCCceEEEEEEcccc
Q 023267          225 LVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYC  255 (285)
Q Consensus       225 L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~  255 (285)
                      |++|.+.+...     +..+..+++|+.++++....
T Consensus       150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            77777665432     12344567777777766543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.05  E-value=0.00015  Score=64.37  Aligned_cols=122  Identities=21%  Similarity=0.170  Sum_probs=77.8

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPNLV  226 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~  226 (285)
                      +++|++|+|.+..+++. ....+..+++|++|+|.++.-. .+.  .-...++|+.|.++++. +..+..    ..++|+
T Consensus       274 ~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLE  350 (455)
T ss_dssp             TSCCCEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCC
T ss_pred             ccCceEEEecCcccccc-chhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCC
Confidence            46788888887776543 2233567888888888877422 111  01134578888888875 555432    368888


Q ss_pred             EEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          227 SFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      .|.+.+....    ..+..+++|+.+++++.......   ...+..+++|+.|+|+..
T Consensus       351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcccccChhhccccccccEEECCCCccccCC---HhHhccCCcccEEEccCC
Confidence            8888776542    23567888888888875543221   223567888888887643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.04  E-value=0.00019  Score=60.60  Aligned_cols=127  Identities=11%  Similarity=0.050  Sum_probs=72.4

Q ss_pred             CCCceEEEEeeCCCc-ccHHHHHHHHHhCCceEEEEEe-cCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHH
Q 023267           94 KSLQQLRICYPVNSD-YDVDSWVQFAVDKRVQRLELDF-SESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVL  171 (285)
Q Consensus        94 ~~l~~l~l~~~~~~~-~~~~~wl~~~~~~~v~~L~l~~-~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l  171 (285)
                      ..++.+.++...... ..+...+.  .-++++.|.+.. ..-.      ..+|..+   ..+++|++|+|++..++.. +
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~------~~~p~~l---~~l~~L~~L~Ls~n~l~~~-~  117 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLV------GPIPPAI---AKLTQLHYLYITHTNVSGA-I  117 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEE------SCCCGGG---GGCTTCSEEEEEEECCEEE-C
T ss_pred             ceEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCccc------ccCChhH---hcCCCCCEEECcCCeeCCc-C
Confidence            357777776543221 01112111  126899999873 3211      2345443   4679999999999887532 2


Q ss_pred             HHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCe-EE--E-eCC-CceEEEEecc
Q 023267          172 HYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSN-LE--I-NAP-NLVSFEFSAG  233 (285)
Q Consensus       172 ~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~-l~--i-~~p-~L~~l~~~~~  233 (285)
                      ...+..+++|++|+|.++.-...+ ..-...++|+.|.+.++. +.. +.  + ..+ +|+.|.+.+.
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSS
T ss_pred             CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCC
Confidence            223677999999999987421111 001234679999998875 321 11  1 223 6777766554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.03  E-value=0.00022  Score=66.11  Aligned_cols=74  Identities=19%  Similarity=0.098  Sum_probs=41.7

Q ss_pred             CceeEEEEecCCCCCeEEEeCCCceEEEEecceeeeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          202 LKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       202 ~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      ++|+.|.++++. +..+.-..++|+.|.+++......-..+++|+.+++++......    ...+..+++|+.|+|+..
T Consensus       221 ~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~l----p~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          221 SGLKELIVSGNR-LTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRL----PESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSC----CGGGGGSCTTCEEECCSC
T ss_pred             CCCCEEEccCCc-cCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcC----CHHHhhccccCEEEecCC
Confidence            345566665553 44444445667777766654321111567777777776554321    122567788888877654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.02  E-value=0.00044  Score=64.10  Aligned_cols=52  Identities=19%  Similarity=0.134  Sum_probs=22.8

Q ss_pred             CceeEEEEecCCCCCeEEEeCCCceEEEEecceeeeeecCCCceEEEEEEccc
Q 023267          202 LKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       202 ~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~  254 (285)
                      ++|++|.+++|. +..+.-..++|+.|.+.+......-..+++|+.++++...
T Consensus       141 ~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~  192 (622)
T 3g06_A          141 PGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ  192 (622)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC
Confidence            344555555442 3332222344555544433321111334666666666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.02  E-value=0.001  Score=59.98  Aligned_cols=129  Identities=10%  Similarity=0.175  Sum_probs=73.2

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHh--cCCccceeecccCCCcceE--EEe----CCC---------------------
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLC--YCPLLEVLTLKGAEKLIRI--RVS----GPS---------------------  201 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~--~cp~Le~L~L~~c~~~~~~--~i~----~~~---------------------  201 (285)
                      ..+++|+.|++.+..+++..+..+..  .++.|++|++.+|.-.+.+  .+.    ...                     
T Consensus       217 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~  296 (520)
T 2z7x_B          217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY  296 (520)
T ss_dssp             GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHH
T ss_pred             ccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhh
Confidence            45788888888888888776655443  3578999998876311000  000    111                     


Q ss_pred             -----CceeEEEEecCCCCCeEE--EeCCCceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCC
Q 023267          202 -----LKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLP  270 (285)
Q Consensus       202 -----~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~  270 (285)
                           .+++.|.+.++. +..+.  ...++|++|.+++...    +..+..+++|+.++++....... ..+...+..++
T Consensus       297 ~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~l~  374 (520)
T 2z7x_B          297 EIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-SKIAEMTTQMK  374 (520)
T ss_dssp             HHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-HHHHHHHTTCT
T ss_pred             cccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-ccchHHHhhCC
Confidence                 234555555543 22222  2457777777766543    22345677888888776554321 12233456667


Q ss_pred             cceEEEEEEEe
Q 023267          271 QLRTLKLNLMA  281 (285)
Q Consensus       271 ~L~~L~L~~~~  281 (285)
                      +|+.|+|+...
T Consensus       375 ~L~~L~Ls~N~  385 (520)
T 2z7x_B          375 SLQQLDISQNS  385 (520)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEECCCCc
Confidence            77777766443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.00  E-value=0.00023  Score=65.54  Aligned_cols=119  Identities=15%  Similarity=0.054  Sum_probs=77.7

Q ss_pred             CCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEEE-eCCCceE
Q 023267          150 TSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLEI-NAPNLVS  227 (285)
Q Consensus       150 ~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~i-~~p~L~~  227 (285)
                      ...+++|+.|++.+..++.-.   -+..++.|++|++.+|.. ..+ .+  ..++|+.|.+.++.....+.+ ..|+|++
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~  354 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSY  354 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCE
T ss_pred             cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cccccC--CCCccceeeccCCcCccchhhccCCCCCE
Confidence            346788999999888765432   366788999999998854 222 22  556789999998854444332 5789999


Q ss_pred             EEEecceee------eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          228 FEFSAGELI------VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       228 l~~~~~~~~------~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      +.+.+....      ..+..+++|+.++++........    ..+..+++|+.|+++
T Consensus       355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~l~~L~~L~l~  407 (606)
T 3vq2_A          355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS----ANFMGLEELQHLDFQ  407 (606)
T ss_dssp             EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC----CCCTTCTTCCEEECT
T ss_pred             EECcCCccCCCcchhhhhccCCcccEeECCCCccccch----hhccCCCCCCeeECC
Confidence            998876532      23567899999999865432111    223445555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.00  E-value=9.7e-05  Score=63.73  Aligned_cols=101  Identities=17%  Similarity=0.166  Sum_probs=48.5

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCc
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNL  225 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L  225 (285)
                      .+++|++|+|++..++.-.- ..+..++.|++|+|.++. +..+.-  -...++|+.|.+.++. +..+.-    ..++|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQL  138 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred             cccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccC
Confidence            45667777766655432111 124456677777776653 222110  1123456666666654 333321    34566


Q ss_pred             eEEEEecceee---e-ee---cCCCceEEEEEEcccc
Q 023267          226 VSFEFSAGELI---V-SF---KHVPSLVEMSIEGDYC  255 (285)
Q Consensus       226 ~~l~~~~~~~~---~-~~---~~~~~L~~l~l~~~~~  255 (285)
                      +.|.+.+....   . .+   ..+++|+.++|+...+
T Consensus       139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            66666554321   1 11   3456666666665443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.00  E-value=7.4e-05  Score=59.79  Aligned_cols=100  Identities=12%  Similarity=0.091  Sum_probs=50.7

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEE----EeCCCce
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLE----INAPNLV  226 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~  226 (285)
                      .+++|++|+|.+..++.-. ...+.+++.|++|+|.++.-..-. ..-...++|+.|.++++. +..+.    ...++|+
T Consensus        55 ~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  132 (220)
T 2v70_A           55 KLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVR  132 (220)
T ss_dssp             GCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCS
T ss_pred             cCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCC
Confidence            4567777777665543311 112455677777777665321100 001123456666666654 33331    1346666


Q ss_pred             EEEEeccee----eeeecCCCceEEEEEEcc
Q 023267          227 SFEFSAGEL----IVSFKHVPSLVEMSIEGD  253 (285)
Q Consensus       227 ~l~~~~~~~----~~~~~~~~~L~~l~l~~~  253 (285)
                      .|.+.+...    +..+..+++|+.+++++.
T Consensus       133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             EEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            666655433    123445666776666544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.96  E-value=0.00031  Score=64.21  Aligned_cols=124  Identities=14%  Similarity=0.098  Sum_probs=63.3

Q ss_pred             CCCCccEEEeeeEEeChh-HHHHHHhcCCccceeecccCCCcceE--EEeCCCCceeEEEEecCCCCCeE-EEeC-CCce
Q 023267          152 SFSSLVSLRLIDVDIPEE-VLHYLLCYCPLLEVLTLKGAEKLIRI--RVSGPSLKLKYLELRDLPNLSNL-EINA-PNLV  226 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~-~l~~ll~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~c~~l~~l-~i~~-p~L~  226 (285)
                      .+++|+.|+|++..+++- .+...+..++.|+.|++.++.-...+  ..-...++|+.|.++++. +... .... ++|+
T Consensus       375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~  453 (562)
T 3a79_B          375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSVFRCLPPKVK  453 (562)
T ss_dssp             SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCS
T ss_pred             ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcchhhhhcCcCC
Confidence            455566666655555431 13333455666666666655321101  011122456666666664 2211 1111 5777


Q ss_pred             EEEEecceee---eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          227 SFEFSAGELI---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       227 ~l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      .|.+.+....   ..+..+++|+.++++..........   .+..+++|+.|+|+.
T Consensus       454 ~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~  506 (562)
T 3a79_B          454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG---VFDRLTSLQYIWLHD  506 (562)
T ss_dssp             EEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT---STTTCTTCCCEECCS
T ss_pred             EEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH---HHhcCCCCCEEEecC
Confidence            7777665432   2234677888888876554322111   356677788777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.96  E-value=3.3e-05  Score=67.06  Aligned_cols=160  Identities=15%  Similarity=0.087  Sum_probs=107.6

Q ss_pred             HHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-
Q 023267          117 FAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-  195 (285)
Q Consensus       117 ~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-  195 (285)
                      ..+.++++++.+..+.-...+.  ..+...+  ...+++|++|+|++..+++.++..+...+++|++|+|.+|. +++. 
T Consensus        68 ~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~L--~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~  142 (372)
T 3un9_A           68 AEVLSSLRQLNLAGVRMTPVKC--TVVAAVL--GSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEA  142 (372)
T ss_dssp             HHHHTTCCEEECTTSCCCHHHH--HHHHHHH--SSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHH
T ss_pred             HHHHhhCCEEEecCCCCCHHHH--HHHHHHH--hhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHH
Confidence            3445789988876443211000  1111111  12357999999999999999998888888999999999984 2221 


Q ss_pred             ------EEeCCCCceeEEEEecCCCCCeEE--------EeCCCceEEEEecceee--------eeecCCCceEEEEEEcc
Q 023267          196 ------RVSGPSLKLKYLELRDLPNLSNLE--------INAPNLVSFEFSAGELI--------VSFKHVPSLVEMSIEGD  253 (285)
Q Consensus       196 ------~i~~~~~~L~~L~i~~c~~l~~l~--------i~~p~L~~l~~~~~~~~--------~~~~~~~~L~~l~l~~~  253 (285)
                            .+.+...+|+.|.+.+|. +....        ...++|++|.+.+....        -.+..+++|++++|+..
T Consensus       143 ~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          143 CKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             HHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             HHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence                  112345679999999996 43311        14789999999876431        12456789999999987


Q ss_pred             ccchh-hhHHhhhhcCCCcceEEEEEEEee
Q 023267          254 YCTYF-VYTLHQFSSFLPQLRTLKLNLMAV  282 (285)
Q Consensus       254 ~~~~~-~~~~~~ll~~~~~L~~L~L~~~~~  282 (285)
                      ..... ...+...+...++|+.|+|+...+
T Consensus       222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          222 GAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            65432 345556677889999999876543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.96  E-value=0.00026  Score=68.08  Aligned_cols=149  Identities=17%  Similarity=0.075  Sum_probs=84.9

Q ss_pred             CCCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHH
Q 023267           94 KSLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHY  173 (285)
Q Consensus        94 ~~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~  173 (285)
                      +.++.+.++........ ...  ...-++++.|++..+..      ...++...  ...+++|++|+|++..+.... ..
T Consensus        24 ~~l~~LdLs~N~i~~i~-~~~--~~~l~~L~~LdLs~n~~------~~~i~~~~--f~~L~~L~~L~Ls~N~l~~~~-p~   91 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVT-ASS--FPFLEQLQLLELGSQYT------PLTIDKEA--FRNLPNLRILDLGSSKIYFLH-PD   91 (844)
T ss_dssp             TTCCEEEEESCCCCEEC-SSS--CSSCCSCSEEEECTTCC------CCEECTTT--TSSCTTCCEEECTTCCCCEEC-TT
T ss_pred             CCcCEEECCCCcCCccC-hhH--CcccccCeEEeCCCCCC------ccccCHHH--hcCCCCCCEEECCCCcCcccC-Hh
Confidence            45778888765432100 000  01125778887764421      12332221  346788999998887765431 22


Q ss_pred             HHhcCCccceeecccCCCcceE---EEeCCCCceeEEEEecCCCCCeEEE-----eCCCceEEEEecceeee----eecC
Q 023267          174 LLCYCPLLEVLTLKGAEKLIRI---RVSGPSLKLKYLELRDLPNLSNLEI-----NAPNLVSFEFSAGELIV----SFKH  241 (285)
Q Consensus       174 ll~~cp~Le~L~L~~c~~~~~~---~i~~~~~~L~~L~i~~c~~l~~l~i-----~~p~L~~l~~~~~~~~~----~~~~  241 (285)
                      .+.++++|++|+|.+|.-...+   ..-...++|+.|.++++. +..+..     ..++|++|.+.+.....    .+..
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            3567889999999887432211   111234578888888875 433322     46888888887764321    2222


Q ss_pred             C--CceEEEEEEcccc
Q 023267          242 V--PSLVEMSIEGDYC  255 (285)
Q Consensus       242 ~--~~L~~l~l~~~~~  255 (285)
                      +  ++|+.++++....
T Consensus       171 l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSL  186 (844)
T ss_dssp             HHHCSSCCCEECCSBS
T ss_pred             ccCCccceEECCCCcc
Confidence            3  7888888876543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.93  E-value=6.6e-05  Score=61.24  Aligned_cols=126  Identities=17%  Similarity=0.110  Sum_probs=85.5

Q ss_pred             CCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCC
Q 023267          150 TSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAP  223 (285)
Q Consensus       150 ~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p  223 (285)
                      ...+++|++|+|++..+++.. ...+..++.|+.|+|.++.- ..+.  .-...++|+.|.++++. +..+..    ..+
T Consensus        55 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  131 (251)
T 3m19_A           55 FRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLT  131 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             hcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCC
Confidence            346899999999988765422 22356789999999988642 2211  11234679999998884 554432    368


Q ss_pred             CceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          224 NLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       224 ~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      +|+.|.+.+....    -.+..+++|+.++|+........   ...+..+++|+.|+|+...
T Consensus       132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP---HGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSCC
T ss_pred             cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC---HHHHhCCCCCCEEEeeCCc
Confidence            9999999876542    13567899999999876644321   1345778999999887543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.91  E-value=0.00014  Score=67.06  Aligned_cols=38  Identities=24%  Similarity=0.086  Sum_probs=19.1

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c  189 (285)
                      .+++|++|++.+..+....-...+..+++|++|++.++
T Consensus       323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  360 (606)
T 3t6q_A          323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD  360 (606)
T ss_dssp             GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred             ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence            45666666666554332111112445566666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.90  E-value=0.00014  Score=58.50  Aligned_cols=101  Identities=20%  Similarity=0.140  Sum_probs=58.1

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEE---EeCCCc
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLE---INAPNL  225 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~---i~~p~L  225 (285)
                      ..+++|++|+|++..++.-. ...+..++.|+.|+|.++. +..+.-  -...++|+.|.+.++. +..+.   ...++|
T Consensus        61 ~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L  137 (229)
T 3e6j_A           61 DSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHL  137 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTC
T ss_pred             hCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCC
Confidence            45677888888776653311 1234667788888887753 222111  1234567777777664 44332   145777


Q ss_pred             eEEEEecceee----eeecCCCceEEEEEEccc
Q 023267          226 VSFEFSAGELI----VSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       226 ~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~  254 (285)
                      +.|.+.+....    -.+..+++|+.+++.+..
T Consensus       138 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            77777665432    124557777777776543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=96.83  E-value=0.00012  Score=60.39  Aligned_cols=145  Identities=17%  Similarity=0.166  Sum_probs=86.3

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCc--ceEEEe
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKL--IRIRVS  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~--~~~~i~  198 (285)
                      ++++.|.+..+.       ...++...  ...+++|++|+|++..++.... ..+..++.|++|++.++.-.  ....+ 
T Consensus        52 ~~L~~L~l~~n~-------l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~-  120 (276)
T 2z62_A           52 PELQVLDLSRCE-------IQTIEDGA--YQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPI-  120 (276)
T ss_dssp             TTCSEEECTTCC-------CCEECTTT--TTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTCCC-
T ss_pred             cCCcEEECCCCc-------CCccCHHH--ccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCccccCchhc-
Confidence            678888775432       12333321  3468899999999887654321 23567899999999887422  22122 


Q ss_pred             CCCCceeEEEEecCCCCCeEEE-----eCCCceEEEEecceeee----eecCCCceE----EEEEEccccchhhhHHhhh
Q 023267          199 GPSLKLKYLELRDLPNLSNLEI-----NAPNLVSFEFSAGELIV----SFKHVPSLV----EMSIEGDYCTYFVYTLHQF  265 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l~i-----~~p~L~~l~~~~~~~~~----~~~~~~~L~----~l~l~~~~~~~~~~~~~~l  265 (285)
                      ...++|+.|.+.++. +..+.+     ..++|++|.+.+.....    .+..+++|+    +++++..........    
T Consensus       121 ~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~----  195 (276)
T 2z62_A          121 GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG----  195 (276)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT----
T ss_pred             ccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc----
Confidence            234679999998875 444321     46899999988765321    233334444    677766544322111    


Q ss_pred             hcCCCcceEEEEEEEe
Q 023267          266 SSFLPQLRTLKLNLMA  281 (285)
Q Consensus       266 l~~~~~L~~L~L~~~~  281 (285)
                      .....+|+.|+|+...
T Consensus       196 ~~~~~~L~~L~L~~n~  211 (276)
T 2z62_A          196 AFKEIRLKELALDTNQ  211 (276)
T ss_dssp             SSCSCCEEEEECCSSC
T ss_pred             ccCCCcccEEECCCCc
Confidence            1233478888887543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.82  E-value=0.00031  Score=64.24  Aligned_cols=125  Identities=15%  Similarity=0.138  Sum_probs=84.0

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcc--eE-EEeCCCCceeEEEEecCCCCCe-E----EEeC
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLI--RI-RVSGPSLKLKYLELRDLPNLSN-L----EINA  222 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~--~~-~i~~~~~~L~~L~i~~c~~l~~-l----~i~~  222 (285)
                      ..+++|++|+|++..+++... ..+..++.|++|++.++.-..  .+ ..-...++|+.|.++++. +.. +    ....
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l  427 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWA  427 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCC
T ss_pred             cCCCCceEEECCCCccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCc
Confidence            468999999999988876332 235789999999999874211  11 111344679999999886 332 2    2246


Q ss_pred             CCceEEEEecceee-eeecCC-CceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          223 PNLVSFEFSAGELI-VSFKHV-PSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       223 p~L~~l~~~~~~~~-~~~~~~-~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      ++|+.|.+.+.... ...... ++|+.++++.......    ..-+..+++|+.|+|+...
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~i----p~~~~~l~~L~~L~L~~N~  484 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI----PKDVTHLQALQELNVASNQ  484 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCC----CTTTTSSCCCSEEECCSSC
T ss_pred             ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCccc----ChhhcCCCCCCEEECCCCC
Confidence            89999999876542 222233 6999999998665422    2223488999999987543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.76  E-value=0.00027  Score=65.25  Aligned_cols=115  Identities=19%  Similarity=0.193  Sum_probs=64.0

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE---eCCCceEE
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI---NAPNLVSF  228 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i---~~p~L~~l  228 (285)
                      ++|+.|+|.+..+++.   ..+..+|.|+.|+|.++.- ..+.  .-...++|+.|.++++. +..+..   ..|+|+.|
T Consensus       232 ~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L  306 (597)
T 3oja_B          232 VELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVL  306 (597)
T ss_dssp             SCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC-CEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEE
T ss_pred             CCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCcc-CCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEE
Confidence            4566666666665543   2356677777777777642 2111  01234567777777764 555443   25677777


Q ss_pred             EEecceee---eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          229 EFSAGELI---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       229 ~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      .+.+....   ..+..+++|+.|+|++......  .    +..+++|+.|+|+.
T Consensus       307 ~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~--~----~~~~~~L~~L~l~~  354 (597)
T 3oja_B          307 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--K----LSTHHTLKNLTLSH  354 (597)
T ss_dssp             ECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC--C----CCTTCCCSEEECCS
T ss_pred             ECCCCCCCccCcccccCCCCCEEECCCCCCCCc--C----hhhcCCCCEEEeeC
Confidence            77655431   2234566777777765443221  1    45566777766653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.72  E-value=0.00022  Score=57.01  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=55.4

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCC
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPN  224 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~  224 (285)
                      ..+++|+.|+|++..++.-. ...+.+++.|+.|+|.++.- ..+.  +-...++|+.|.+.++. +..+..    ..++
T Consensus        53 ~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  129 (220)
T 2v9t_B           53 SPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHN  129 (220)
T ss_dssp             TTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             hCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCC
Confidence            45677777777776654321 11245677778887776531 1111  01223567777777664 433321    3467


Q ss_pred             ceEEEEecceee----eeecCCCceEEEEEEcc
Q 023267          225 LVSFEFSAGELI----VSFKHVPSLVEMSIEGD  253 (285)
Q Consensus       225 L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~  253 (285)
                      |+.|.+.+....    -.+..+++|+.+++.+.
T Consensus       130 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            777777665431    12445677777777654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.70  E-value=0.00033  Score=65.46  Aligned_cols=12  Identities=25%  Similarity=0.343  Sum_probs=6.1

Q ss_pred             cCCCcceEEEEE
Q 023267          267 SFLPQLRTLKLN  278 (285)
Q Consensus       267 ~~~~~L~~L~L~  278 (285)
                      ..+++|+.|+|+
T Consensus       581 ~~l~~L~~L~L~  592 (680)
T 1ziw_A          581 NNQVSLKSLNLQ  592 (680)
T ss_dssp             TTCTTCCEEECT
T ss_pred             CCCCCCCEEECC
Confidence            344555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.68  E-value=0.0001  Score=67.60  Aligned_cols=56  Identities=18%  Similarity=0.303  Sum_probs=33.9

Q ss_pred             CCCceEEEEeccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEE
Q 023267          222 APNLVSFEFSAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKL  277 (285)
Q Consensus       222 ~p~L~~l~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L  277 (285)
                      .++|+.|.+++...     +..++.+++|+.++|++............+...+|+|+.|++
T Consensus       507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            45666666655432     234567788888888776544333334455666788887753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=96.68  E-value=0.00064  Score=63.19  Aligned_cols=126  Identities=17%  Similarity=0.149  Sum_probs=69.1

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeC---------CCCceeEEEEecCCCCCeEEE--
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSG---------PSLKLKYLELRDLPNLSNLEI--  220 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~---------~~~~L~~L~i~~c~~l~~l~i--  220 (285)
                      .+++|++|+|++..++.- -..+...++.|++|+|.++.-. .+....         ...+|+.|.++++. +..+.-  
T Consensus       431 ~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~  507 (636)
T 4eco_A          431 KGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDF  507 (636)
T ss_dssp             CCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGG
T ss_pred             cCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCccChhh
Confidence            455788888888776521 2245567888888888876422 111000         01167788887774 443321  


Q ss_pred             ---eCCCceEEEEeccee---eeeecCCCceEEEEEEccc---cchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          221 ---NAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDY---CTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       221 ---~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                         ..|+|+.|.+.+...   +..+..+++|+.++|+...   .......+...+..+++|+.|+|+..
T Consensus       508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence               456777777765443   2345567777777774311   00001111122345667777766543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.65  E-value=0.00037  Score=65.10  Aligned_cols=99  Identities=18%  Similarity=0.229  Sum_probs=43.4

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEE----EeCCCc
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLE----INAPNL  225 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L  225 (285)
                      .+++|++|+|++..++.-. ...+..|++|++|++.++.- ..+.  .-....+|+.|.+.++. +..+.    ...++|
T Consensus        71 ~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L  147 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENL  147 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTC
T ss_pred             cccCcCEEECCCCccCccC-hhhhccCCCCCEEECCCCcc-CccChhHccccCCCCEEECCCCc-ccccCchhhcccccC
Confidence            3456666666555443211 01234556666666655421 1111  00123456666666553 22221    134556


Q ss_pred             eEEEEecceee------eeecCCCceEEEEEEcc
Q 023267          226 VSFEFSAGELI------VSFKHVPSLVEMSIEGD  253 (285)
Q Consensus       226 ~~l~~~~~~~~------~~~~~~~~L~~l~l~~~  253 (285)
                      ++|.+.+....      +....+++|++++++..
T Consensus       148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            66655543221      01123456666666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.63  E-value=5e-05  Score=59.10  Aligned_cols=39  Identities=18%  Similarity=0.270  Sum_probs=21.9

Q ss_pred             CCCCccEEEeeeE-EeChhHHH---HHHhcCCccceeecccCC
Q 023267          152 SFSSLVSLRLIDV-DIPEEVLH---YLLCYCPLLEVLTLKGAE  190 (285)
Q Consensus       152 ~~~~L~~L~L~~~-~i~~~~l~---~ll~~cp~Le~L~L~~c~  190 (285)
                      ..+.|++|+|.++ .+++++..   ..+..++.|++|+|.+|.
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~   76 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR   76 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence            3456666666666 56665533   234455666666666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=96.59  E-value=0.0015  Score=50.05  Aligned_cols=101  Identities=13%  Similarity=0.079  Sum_probs=70.0

Q ss_pred             hcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceeee---e-ecCCCceEEE
Q 023267          176 CYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELIV---S-FKHVPSLVEM  248 (285)
Q Consensus       176 ~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~~---~-~~~~~~L~~l  248 (285)
                      ..|+.|++|++.++.- ..+ .+....++|+.|.++++. +..+.  -..++|++|.+.+.....   . +..+++|+.+
T Consensus        16 ~~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             ECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            4689999999999742 222 222333489999999985 66653  146899999998765421   1 3678999999


Q ss_pred             EEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          249 SIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       249 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      +++........ . ...+..+++|+.|+++..
T Consensus        94 ~L~~N~i~~~~-~-~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           94 ILTNNSLVELG-D-LDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             ECCSCCCCCGG-G-GGGGGGCTTCCEEECCSS
T ss_pred             ECCCCcCCcch-h-hHhhhcCCCCCEEEecCC
Confidence            99987653321 1 224578999999988753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.55  E-value=0.0013  Score=60.17  Aligned_cols=49  Identities=16%  Similarity=0.211  Sum_probs=21.9

Q ss_pred             CceeEEEEecCCCCCeEEEeCCCceEEEEeccee---eeeecCCCceEEEEEEccc
Q 023267          202 LKLKYLELRDLPNLSNLEINAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       202 ~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~  254 (285)
                      ++|+.|.++++. +..+.-..++|+.|.+.+...   +. +.  ++|+.++|++..
T Consensus       140 ~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          140 ALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC
T ss_pred             ccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC
Confidence            345555555443 332222344555555544332   11 11  556666665543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=96.50  E-value=0.00057  Score=65.75  Aligned_cols=126  Identities=14%  Similarity=0.062  Sum_probs=72.4

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--C-------CCCceeEEEEecCCCCCeEEE---
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--G-------PSLKLKYLELRDLPNLSNLEI---  220 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~-------~~~~L~~L~i~~c~~l~~l~i---  220 (285)
                      +++|+.|+|++..++.- -..+...++.|+.|+|.++.- ..+.-.  .       .+++|+.|.+++|. +..+..   
T Consensus       672 ~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~  748 (876)
T 4ecn_A          672 GINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFR  748 (876)
T ss_dssp             CCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGS
T ss_pred             CCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCC-CccchHHhh
Confidence            34788888888777621 234456789999999987632 211100  0       11268888888874 444331   


Q ss_pred             --eCCCceEEEEeccee---eeeecCCCceEEEEEEccc---cchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          221 --NAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDY---CTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       221 --~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~---~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                        ..|+|+.|.+.+...   +..+..+++|+.++|+...   .......+...+..+++|+.|+|+...
T Consensus       749 ~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND  817 (876)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             hccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence              357788888776543   3345577888888886411   000011122234567777777776443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=96.46  E-value=0.00081  Score=62.51  Aligned_cols=83  Identities=11%  Similarity=0.033  Sum_probs=48.0

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhH----HHHH--HhcCCccceeecccCCCcc
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEV----LHYL--LCYCPLLEVLTLKGAEKLI  193 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~----l~~l--l~~cp~Le~L~L~~c~~~~  193 (285)
                      ++++.|.+..+.-.      ..+|..   ...+++|++|+|++.. +++..    +..+  +..+++|++|++.++.-. 
T Consensus       249 ~~L~~L~L~~n~l~------~~~p~~---l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          249 KDLTDVEVYNCPNL------TKLPTF---LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             TTCCEEEEECCTTC------SSCCTT---TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             CCCCEEEecCCcCC------ccChHH---HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            68889998765422      234543   3467888889888887 76522    2222  234578888888776422 


Q ss_pred             eEE---EeCCCCceeEEEEecCC
Q 023267          194 RIR---VSGPSLKLKYLELRDLP  213 (285)
Q Consensus       194 ~~~---i~~~~~~L~~L~i~~c~  213 (285)
                      .+.   .-...++|+.|.+.++.
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~  341 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQ  341 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCC
T ss_pred             ccCchhhhccCCCCCEEeCcCCc
Confidence            111   11123456666666553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.36  E-value=0.00027  Score=55.71  Aligned_cols=35  Identities=17%  Similarity=0.040  Sum_probs=14.6

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c  189 (285)
                      ++|++|+|.+..++.- ....+..++.|++|++.++
T Consensus        28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n   62 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGN   62 (208)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS
T ss_pred             CCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCC
Confidence            3455555544443321 1112334455555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=96.26  E-value=0.0012  Score=63.66  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=31.2

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eCh----hHHHHH---HhcCCccceeecccC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPE----EVLHYL---LCYCPLLEVLTLKGA  189 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~----~~l~~l---l~~cp~Le~L~L~~c  189 (285)
                      ++++.|.+..+.-.      -.+|..+   ..+++|+.|+|++.. +++    ..+..+   +..+|+|+.|+|.++
T Consensus       491 ~~L~~L~Ls~N~l~------~~iP~~l---~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          491 KDLTDVELYNCPNM------TQLPDFL---YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             TTCCEEEEESCTTC------CSCCGGG---GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCC------ccChHHH---hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            67888888765422      2334322   245666666666665 544    112221   133446666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=96.24  E-value=0.0011  Score=49.14  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=69.7

Q ss_pred             cCCccceeecccCCCc-ceE-EEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee----eeecCCCceEEE
Q 023267          177 YCPLLEVLTLKGAEKL-IRI-RVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI----VSFKHVPSLVEM  248 (285)
Q Consensus       177 ~cp~Le~L~L~~c~~~-~~~-~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~----~~~~~~~~L~~l  248 (285)
                      ..+.|++|++.+|.-. ..+ ..-...++|+.|.+.+|. +..+.  ...++|++|.+++....    ..+..+++|+.+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3488999999998532 122 122445789999999885 55442  24689999999876542    234468999999


Q ss_pred             EEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          249 SIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       249 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      +++.......  .....+..+++|+.|+++..
T Consensus        94 ~ls~N~i~~~--~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           94 NLSGNKIKDL--STIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             ECTTSCCCSH--HHHGGGGGCTTCCEEECTTC
T ss_pred             ECCCCcCCCh--HHHHHHhhCCCCCEEeCcCC
Confidence            9998665332  22245688999999998754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.23  E-value=0.00017  Score=61.26  Aligned_cols=53  Identities=15%  Similarity=0.196  Sum_probs=22.8

Q ss_pred             CCCceEEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          222 APNLVSFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       222 ~p~L~~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      .++|++|.+.+....    ..+..+++|++++++.......    ...+..+++|+.|+++
T Consensus       216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l----p~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV----PAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC----CTTGGGCTTCCEEECC
T ss_pred             CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec----ChhhhcCccCCEEECC
Confidence            345555555443221    1234455555555554332211    1113445555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.13  E-value=0.0018  Score=59.49  Aligned_cols=119  Identities=23%  Similarity=0.268  Sum_probs=53.0

Q ss_pred             CccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEEE----eCCCceEE
Q 023267          155 SLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLEI----NAPNLVSF  228 (285)
Q Consensus       155 ~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l  228 (285)
                      ++++|+|++-.|+.-. ..-+.++++|+.|+|++|. +..+.-.  ...++|++|.++++. ++.+..    ..++|++|
T Consensus        53 ~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEE
T ss_pred             CCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEE
Confidence            4566666554432210 0113445666666666552 2211110  123455666666553 444432    23556666


Q ss_pred             EEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          229 EFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       229 ~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      .+.+...    ...++++++|++++++......  ......+..+++|+.|+|+
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTCCEEECC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCcccc--CCCchhhccchhhhhhccc
Confidence            5554432    1234555666666665433221  1111223445555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=95.77  E-value=0.002  Score=57.38  Aligned_cols=52  Identities=15%  Similarity=0.091  Sum_probs=29.5

Q ss_pred             CceeEEEEecCCCCCeEEEeCCCceEEEEecceee--eeecCCCceEEEEEEccc
Q 023267          202 LKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       202 ~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~  254 (285)
                      ++|+.|.+.++. +..+.-..++|++|.+.+....  ..++.+++|+.++++...
T Consensus       195 ~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          195 PFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             TTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCc
Confidence            456666666553 3333323456777776654321  135567778888877644

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=95.71  E-value=0.0044  Score=55.11  Aligned_cols=33  Identities=24%  Similarity=0.146  Sum_probs=15.7

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c  189 (285)
                      ++|++|++++..++.  +.. +..++.|++|++.++
T Consensus       215 ~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          215 LSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNN  247 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred             CcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCC
Confidence            355555555554431  111 344555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=95.67  E-value=0.00092  Score=56.71  Aligned_cols=37  Identities=16%  Similarity=0.147  Sum_probs=17.4

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c  189 (285)
                      .+++|++|+|.+..++... ...+..++.|++|++.++
T Consensus        76 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           76 GLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             TCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSS
T ss_pred             CCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCC
Confidence            4555555555554443211 111344555555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=95.62  E-value=0.0069  Score=55.47  Aligned_cols=110  Identities=17%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             CccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEEeCCCceEEEEecce
Q 023267          155 SLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGE  234 (285)
Q Consensus       155 ~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~  234 (285)
                      +|++|+|++..++.  +..   .+++|+.|+|+++.- ..  +....++|+.|.++++. +..+..-.++|+.|.+.+..
T Consensus       121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l-~~--lp~~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~  191 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQL-TM--LPELPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNL  191 (571)
T ss_dssp             TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCC-SC--CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCC--CCC---cCccccEEeCCCCcc-Cc--CCCcCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCC
Confidence            56666666555433  111   456666666665531 11  11123456666666664 32221112666666665543


Q ss_pred             ee-e-eecCCCce-------EEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          235 LI-V-SFKHVPSL-------VEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       235 ~~-~-~~~~~~~L-------~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      .. + .+.  .+|       +.+++++..+......    +..+++|+.|+|+.
T Consensus       192 L~~lp~~~--~~L~~~~~~L~~L~Ls~N~l~~lp~~----l~~l~~L~~L~L~~  239 (571)
T 3cvr_A          192 LESLPAVP--VRNHHSEETEIFFRCRENRITHIPEN----ILSLDPTCTIILED  239 (571)
T ss_dssp             CSSCCCCC----------CCEEEECCSSCCCCCCGG----GGGSCTTEEEECCS
T ss_pred             CCchhhHH--HhhhcccccceEEecCCCcceecCHH----HhcCCCCCEEEeeC
Confidence            21 0 011  144       6666665443322111    22356666666553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=95.46  E-value=0.0022  Score=51.02  Aligned_cols=119  Identities=15%  Similarity=0.086  Sum_probs=61.3

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCCceE
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPNLVS  227 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~  227 (285)
                      ++|+.|+|.+..++.-. ...+..++.|+.|+|.++.- ..+.  .-...++|+.|.++++. +..+.-    ..++|+.
T Consensus        32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCE
Confidence            46777777665543211 11245567777777766531 1110  01123456677776664 433321    3466777


Q ss_pred             EEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          228 FEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       228 l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      |.+.+....    ..+..+++|+.++|+.........   ..+..+++|+.|+|+
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---GTFSPLRAIQTMHLA  160 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECC
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH---HHHhCCCCCCEEEeC
Confidence            776655432    234456777777776654332211   223456667766664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=95.30  E-value=0.0037  Score=48.52  Aligned_cols=99  Identities=18%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCCceE
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPNLVS  227 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~  227 (285)
                      ++|++|+|.+..++.-.-...+...+.|++|+|.++.- ..+.  .-...++|+.|.+++.. +..+..    ..++|++
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~  106 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence            47888888877764422222356778888888877632 1110  01123567888887774 544432    3578888


Q ss_pred             EEEecceee----eeecCCCceEEEEEEccc
Q 023267          228 FEFSAGELI----VSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       228 l~~~~~~~~----~~~~~~~~L~~l~l~~~~  254 (285)
                      |.+.+....    ..+..+++|+.+++++..
T Consensus       107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             EECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            888766542    235678889999887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=95.16  E-value=0.0032  Score=50.40  Aligned_cols=119  Identities=16%  Similarity=0.069  Sum_probs=64.7

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCceE
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLVS  227 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~  227 (285)
                      ++|++|+|++..++... ...+..++.|+.|+|.++.- ..+.-  -...++|+.|.++++. +..+.-    ..++|+.
T Consensus        40 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCe
Confidence            66777777776654321 12245667777777776532 22111  1233567777777663 444321    3567777


Q ss_pred             EEEecceee---eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          228 FEFSAGELI---VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       228 l~~~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      |.+.+....   ..+..+++|+.++|+.........   ..+..+++|+.|+|+
T Consensus       117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A          117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH---GAFDRLSSLTHAYLF  167 (229)
T ss_dssp             EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECT
T ss_pred             EeccCCcccccCcccccCCCCCEEECCCCcCCccCH---HHHhCCCCCCEEEee
Confidence            777655432   234456777777776654332111   234566777766654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.15  E-value=0.031  Score=47.16  Aligned_cols=116  Identities=16%  Similarity=0.102  Sum_probs=73.9

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEEE----eCCCce-
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLEI----NAPNLV-  226 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~i----~~p~L~-  226 (285)
                      .+++.+.+.+. +...++..+...|+.|+.|+|.++. +..+.-.  ..+.+|+.|.+.+-  +..|.-    .+++|+ 
T Consensus       202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAG  277 (329)
T ss_dssp             GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred             cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccE
Confidence            44555656543 5556677777789999999998753 2222111  23456788877652  444442    567888 


Q ss_pred             EEEEeccee---eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267          227 SFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       227 ~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  276 (285)
                      .+.+.+...   ...+.+|++|+++.+..........   ..+.+|++|+.+.
T Consensus       278 ~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~---~aF~~~~~L~~ly  327 (329)
T 3sb4_A          278 TLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGD---ELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECT---TTTCTTCCCCEEE
T ss_pred             EEEEcccceEEchhhhhCCccCCEEEeCCCccCccch---hhhcCCcchhhhc
Confidence            888876432   2346789999999997555433221   2357899999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.13  E-value=0.02  Score=48.33  Aligned_cols=85  Identities=15%  Similarity=0.181  Sum_probs=46.8

Q ss_pred             CCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCC--CCCC------cee-----ecCccccCCCC--------C
Q 023267           95 SLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESK--TEGH------ELH-----TFSPYFKTTSS--------F  153 (285)
Q Consensus        95 ~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~--~~~~------~~~-----~~p~~~~~~~~--------~  153 (285)
                      .++.+.+......  .--.++... .++++.|++....-.  ....      ...     .+|...|  .+        |
T Consensus        26 ~l~~L~l~g~i~~--~~~~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF--~~~~~~~~~g~  100 (329)
T 3sb4_A           26 SITHLTLTGKLNA--EDFRHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAF--SNVVNGVTKGK  100 (329)
T ss_dssp             HCSEEEEEEEECH--HHHHHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTT--EEEETTEEEEC
T ss_pred             ceeEEEEeccccH--HHHHHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHh--ccccccccccc
Confidence            3778888754321  111223221 368999999755422  0000      001     2333322  34        8


Q ss_pred             CCccEEEeeeEE---eChhHHHHHHhcCCccceeecccC
Q 023267          154 SSLVSLRLIDVD---IPEEVLHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       154 ~~L~~L~L~~~~---i~~~~l~~ll~~cp~Le~L~L~~c  189 (285)
                      ++|++|.|.+ .   |++..    +.+|++|++|.+...
T Consensus       101 ~~L~~l~L~~-~i~~I~~~a----F~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAA----FKGCDNLKICQIRKK  134 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTT----TTTCTTCCEEEBCCS
T ss_pred             CCCcEEECCc-cccchhHHH----hhcCcccceEEcCCC
Confidence            8999999976 4   44443    467999999999653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=95.12  E-value=0.00039  Score=54.43  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEEeCCCceEEEEe
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEFS  231 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~  231 (285)
                      .+++|++|+|++..+++  +. -+..++.|+.|++.++.      +..               +....-..|+|++|.+.
T Consensus        46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~------l~~---------------l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL------IKK---------------IENLDAVADTLEELWIS  101 (198)
T ss_dssp             HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE------ECS---------------CSSHHHHHHHCSEEEEE
T ss_pred             cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC------ccc---------------ccchhhcCCcCCEEECc
Confidence            45667777777666654  22 34456666666666541      111               11111124778888877


Q ss_pred             cceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          232 AGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       232 ~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      +....  ..+..+++|+.++++.......  .....+..+++|+.|+++..
T Consensus       102 ~N~l~~l~~~~~l~~L~~L~l~~N~i~~~--~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          102 YNQIASLSGIEKLVNLRVLYMSNNKITNW--GEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEECCCHHHHHHHHHSSEEEESEEECCCH--HHHHHHTTTTTCSEEEECSC
T ss_pred             CCcCCcCCccccCCCCCEEECCCCcCCch--hHHHHHhcCCCCCEEEecCC
Confidence            65431  1356789999999987664332  11134678999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=95.08  E-value=0.0027  Score=50.57  Aligned_cols=119  Identities=17%  Similarity=0.126  Sum_probs=51.3

Q ss_pred             CccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCceEE
Q 023267          155 SLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLVSF  228 (285)
Q Consensus       155 ~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l  228 (285)
                      .+++|+|++..++...-...+..++.|+.|+|.++. +..+.-  -...++|+.|.++++. +..+.-    ..++|++|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEE
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEE
Confidence            455555555444332111123455666666665542 111110  0122345555555553 332221    24555666


Q ss_pred             EEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          229 EFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       229 ~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      .+.+....    ..+.++++|+.++|+........   ...+..+++|+.|+|+
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECC
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEec
Confidence            55544321    22445556666666544332211   1123445555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=95.05  E-value=0.003  Score=54.28  Aligned_cols=37  Identities=24%  Similarity=0.218  Sum_probs=15.2

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccC
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c  189 (285)
                      .+++|++|+|++..++.-. ...+..+++|+.|+|.++
T Consensus        86 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N  122 (361)
T 2xot_A           86 PVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYNN  122 (361)
T ss_dssp             TCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCcCCcCC-HHHhCCCcCCCEEECCCC
Confidence            3445555555444432110 112334455555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=94.69  E-value=0.005  Score=46.97  Aligned_cols=100  Identities=19%  Similarity=0.148  Sum_probs=58.0

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLV  226 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~  226 (285)
                      .++|++|++.+..++.- ....+..++.|++|++.++. +..+.-  -...++|+.|.+.++. +..+.-    ..++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~  103 (177)
T 2o6r_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLK  103 (177)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccC
Confidence            36778888777665431 11234667788888887753 221110  1233567777777664 443321    347778


Q ss_pred             EEEEecceee----eeecCCCceEEEEEEcccc
Q 023267          227 SFEFSAGELI----VSFKHVPSLVEMSIEGDYC  255 (285)
Q Consensus       227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~  255 (285)
                      +|.+.+....    ..+..+++|+.+++++..+
T Consensus       104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            8877665431    1235678888888876543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.46  E-value=0.0036  Score=59.09  Aligned_cols=101  Identities=19%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE--EEeCCCCceeEEEEecCCCCCeEE---EeCCCc
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI--RVSGPSLKLKYLELRDLPNLSNLE---INAPNL  225 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~c~~l~~l~---i~~p~L  225 (285)
                      ..+++|+.|+|++..+..  +..-+..++.|+.|+|.++.- ..+  .+ ....+|+.|.++++. +..+.   ...++|
T Consensus       221 ~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~-~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSL-TELPAEI-KNLSNLRVLDLSHNR-LTSLPAELGSCFQL  295 (727)
T ss_dssp             -CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCC-SCCCGGG-GGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred             ccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcC-cccChhh-hCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence            356888888888877642  221233688889998887642 211  11 234568888888875 44432   145788


Q ss_pred             eEEEEeccee---eeeecCCCceEEEEEEccccc
Q 023267          226 VSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCT  256 (285)
Q Consensus       226 ~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~  256 (285)
                      ++|.+.+...   +..++.+++|+.|+|++..+.
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            8888876543   334667888888888776553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=93.89  E-value=0.014  Score=45.25  Aligned_cols=98  Identities=13%  Similarity=0.090  Sum_probs=67.1

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLV  226 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~  226 (285)
                      .++|++|+|.+..++.  +...+..++.|+.|+|.++.- ..+.-  -...++|+.|.+++.. +..+.-    ..++|+
T Consensus        30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcC-CEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCC
Confidence            4689999999888753  223577899999999998642 22111  1234578999998875 555432    358899


Q ss_pred             EEEEecceee----eeecCCCceEEEEEEccc
Q 023267          227 SFEFSAGELI----VSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~  254 (285)
                      .|.+.+....    -.+..+++|+.+++++..
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            9988876542    135568899999987653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=93.78  E-value=0.0083  Score=46.62  Aligned_cols=102  Identities=20%  Similarity=0.147  Sum_probs=64.1

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--e
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--S  198 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~  198 (285)
                      +++++|.+....       .-.+|..   ...+++|++|+|++..++.-. ...+.+++.|++|+|.++. +..+.-  -
T Consensus        31 ~~l~~L~L~~n~-------i~~ip~~---~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f   98 (193)
T 2wfh_A           31 RDVTELYLDGNQ-------FTLVPKE---LSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR-LRCIPPRTF   98 (193)
T ss_dssp             TTCCEEECCSSC-------CCSCCGG---GGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTT
T ss_pred             CCCCEEECCCCc-------CchhHHH---hhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc-cCEeCHHHh
Confidence            577777765432       1234432   346789999999988765422 1235678999999998864 222111  1


Q ss_pred             CCCCceeEEEEecCCCCCeEEE----eCCCceEEEEeccee
Q 023267          199 GPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGEL  235 (285)
Q Consensus       199 ~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~  235 (285)
                      ...++|+.|.+.+.. +..+.-    ..++|+.+.+.+...
T Consensus        99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence            234678899988875 544432    357899998876543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=93.73  E-value=0.016  Score=44.07  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             CCccceeecccCCCcceEEE--eCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEE
Q 023267          178 CPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVE  247 (285)
Q Consensus       178 cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~  247 (285)
                      .+.|++|++.++. +..+.-  -...++|+.|.+.++. +..+.-    ..++|+.|.+.+....    ..+..+++|+.
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence            4799999999864 222111  1234679999999885 554432    4689999999876542    12467899999


Q ss_pred             EEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          248 MSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       248 l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      ++++........   ...+..+++|+.|+|+.
T Consensus       105 L~l~~N~l~~~~---~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A          105 LALDTNQLKSVP---DGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             EECCSSCCSCCC---TTTTTTCTTCCEEECCS
T ss_pred             EECcCCcceEeC---HHHhcCCcccCEEEecC
Confidence            999876654221   23356789999998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=93.36  E-value=0.0084  Score=56.61  Aligned_cols=77  Identities=22%  Similarity=0.217  Sum_probs=34.3

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE--EEeCCCCceeEEEEecCCCCCeEE---EeCCCce
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI--RVSGPSLKLKYLELRDLPNLSNLE---INAPNLV  226 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~c~~l~~l~---i~~p~L~  226 (285)
                      .+++|++|+|++..++  .+..-+..++.|+.|+|+++.- ..+  .+ ....+|+.|.+.++. +..+.   -..++|+
T Consensus       245 ~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~-~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~  319 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRL-TSLPAEL-GSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQ  319 (727)
T ss_dssp             GCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCC-SSCCSSG-GGGTTCSEEECCSSC-CCCCCSSTTSCTTCC
T ss_pred             CCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcC-CccChhh-cCCCCCCEEECCCCC-CCccChhhhcCCCcc
Confidence            3455666666555543  1222234556666666655431 111  01 112345555555553 33221   1345555


Q ss_pred             EEEEecc
Q 023267          227 SFEFSAG  233 (285)
Q Consensus       227 ~l~~~~~  233 (285)
                      .|.+.+.
T Consensus       320 ~L~L~~N  326 (727)
T 4b8c_D          320 FLGVEGN  326 (727)
T ss_dssp             CEECTTS
T ss_pred             EEeCCCC
Confidence            5555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=93.13  E-value=0.042  Score=46.75  Aligned_cols=62  Identities=19%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEE--eCCCCceeEEEEecCC
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRV--SGPSLKLKYLELRDLP  213 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i--~~~~~~L~~L~i~~c~  213 (285)
                      ++++|++|+|++..+.+.-=...+.+++.|+++.+.+++.+..+.-  -...++|+.|.+.++.
T Consensus        52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred             CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence            4566666666654321100001234455555555444444433211  1123456666666553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=92.84  E-value=0.041  Score=42.47  Aligned_cols=97  Identities=20%  Similarity=0.191  Sum_probs=65.9

Q ss_pred             CCccceeecccCCCcceEE---EeCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceE
Q 023267          178 CPLLEVLTLKGAEKLIRIR---VSGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLV  246 (285)
Q Consensus       178 cp~Le~L~L~~c~~~~~~~---i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~  246 (285)
                      .+.|++|++.+..- ..+.   +-...++|+.|.++++. +..+.-    ..++|+.|.+.+....    ..+.++++|+
T Consensus        28 ~~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           28 PLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CTTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            35899999998642 2221   12234679999999885 555431    4689999999876542    2366789999


Q ss_pred             EEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          247 EMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       247 ~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      .++++........   ...+..+++|+.|+|+.
T Consensus       106 ~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A          106 TLNLYDNQISCVM---PGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             EEECCSSCCCEEC---TTSSTTCTTCCEEECTT
T ss_pred             EEECCCCcCCeeC---HHHhhcCCCCCEEEeCC
Confidence            9999986654321   12356788999998764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.62  E-value=0.06  Score=46.93  Aligned_cols=12  Identities=17%  Similarity=-0.067  Sum_probs=7.2

Q ss_pred             CCCCCccEEEee
Q 023267          151 SSFSSLVSLRLI  162 (285)
Q Consensus       151 ~~~~~L~~L~L~  162 (285)
                      .+|++|+.+.|.
T Consensus       177 ~~c~~L~~l~l~  188 (401)
T 4fdw_A          177 YYCYNLKKADLS  188 (401)
T ss_dssp             TTCTTCCEEECT
T ss_pred             hCcccCCeeecC
Confidence            355666666664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=92.53  E-value=0.074  Score=45.22  Aligned_cols=172  Identities=13%  Similarity=0.068  Sum_probs=93.3

Q ss_pred             CCceEEEEeeCCCcccHHHHHHHHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhHHHH
Q 023267           95 SLQQLRICYPVNSDYDVDSWVQFAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEVLHY  173 (285)
Q Consensus        95 ~l~~l~l~~~~~~~~~~~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~  173 (285)
                      .++.+.++......  +..- .+..-++++.|.+....-.      -.+|...|  .++++|+++...+.. +..- -..
T Consensus        31 ~l~~L~Ls~N~i~~--i~~~-~f~~l~~L~~L~Ls~N~i~------~~i~~~~f--~~L~~l~~~l~~~~N~l~~l-~~~   98 (350)
T 4ay9_X           31 NAIELRFVLTKLRV--IQKG-AFSGFGDLEKIEISQNDVL------EVIEADVF--SNLPKLHEIRIEKANNLLYI-NPE   98 (350)
T ss_dssp             TCSEEEEESCCCSE--ECTT-SSTTCTTCCEEEEECCTTC------CEECTTSB--CSCTTCCEEEEEEETTCCEE-CTT
T ss_pred             CCCEEEccCCcCCC--cCHH-HHcCCCCCCEEECcCCCCC------CccChhHh--hcchhhhhhhcccCCccccc-Cch
Confidence            47788877543321  1100 0111268888888754321      22343322  356676665444332 2210 012


Q ss_pred             HHhcCCccceeecccCCCcceEEE-eCCCCceeEEEEecCCCCCeEEEe-----CCCceEEEEecceeee---eecCCCc
Q 023267          174 LLCYCPLLEVLTLKGAEKLIRIRV-SGPSLKLKYLELRDLPNLSNLEIN-----APNLVSFEFSAGELIV---SFKHVPS  244 (285)
Q Consensus       174 ll~~cp~Le~L~L~~c~~~~~~~i-~~~~~~L~~L~i~~c~~l~~l~i~-----~p~L~~l~~~~~~~~~---~~~~~~~  244 (285)
                      .+..+++|+.|++.++.-...... .....++..|.+.++..+..+...     ...++.+.+.+.....   .+...++
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~  178 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ  178 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred             hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence            356789999999988642111111 113456778888887666665432     3467888887765422   2234577


Q ss_pred             eEEEEEEccc-cchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          245 LVEMSIEGDY-CTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       245 L~~l~l~~~~-~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      |+++.+.... .....   ...+..+++|+.|+|+...
T Consensus       179 L~~l~l~~~n~l~~i~---~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          179 LDELNLSDNNNLEELP---NDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             EEEEECTTCTTCCCCC---TTTTTTEECCSEEECTTSC
T ss_pred             hhHHhhccCCcccCCC---HHHhccCcccchhhcCCCC
Confidence            8888886422 22221   1235778999999987543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=89.69  E-value=0.16  Score=46.34  Aligned_cols=75  Identities=21%  Similarity=0.128  Sum_probs=47.6

Q ss_pred             CceeEEEEecCCCCCeEE---EeCCCceEEEEeccee---eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEE
Q 023267          202 LKLKYLELRDLPNLSNLE---INAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTL  275 (285)
Q Consensus       202 ~~L~~L~i~~c~~l~~l~---i~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L  275 (285)
                      ++|+.|.++++. +..+.   ...++|+.|.+++...   + .++.+++|+.|+|++.......  ....+..+++|+.|
T Consensus       463 ~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~--~p~~l~~l~~L~~L  538 (567)
T 1dce_A          463 LLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSA--AIQPLVSCPRLVLL  538 (567)
T ss_dssp             TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSS--TTGGGGGCTTCCEE
T ss_pred             ccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCC--CcHHHhcCCCCCEE
Confidence            467778777774 44332   1467888888776543   3 5677888888888876543321  01234678888888


Q ss_pred             EEEEE
Q 023267          276 KLNLM  280 (285)
Q Consensus       276 ~L~~~  280 (285)
                      +|+..
T Consensus       539 ~L~~N  543 (567)
T 1dce_A          539 NLQGN  543 (567)
T ss_dssp             ECTTS
T ss_pred             EecCC
Confidence            87643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=87.25  E-value=0.31  Score=42.08  Aligned_cols=54  Identities=13%  Similarity=0.138  Sum_probs=27.1

Q ss_pred             eCCCceEEEEeccee---eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          221 NAPNLVSFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       221 ~~p~L~~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      .|.+|+++.+.....   ...+.+|.+|+++.+.+....+      .....+.+|+.+.+.-.
T Consensus       332 ~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~------~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          332 GCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW------NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH------HTCBCCCCC--------
T ss_pred             CCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh------hhhhccCCCCEEEeCCC
Confidence            356677777654332   2346678888888887532111      22466778887776543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=86.24  E-value=0.38  Score=41.79  Aligned_cols=30  Identities=17%  Similarity=0.432  Sum_probs=18.0

Q ss_pred             CccEEEeee-EE-eChhHHHHHHhcCCccceeeccc
Q 023267          155 SLVSLRLID-VD-IPEEVLHYLLCYCPLLEVLTLKG  188 (285)
Q Consensus       155 ~L~~L~L~~-~~-i~~~~l~~ll~~cp~Le~L~L~~  188 (285)
                      +|+++.|.+ +. +++..    +.+|++|+.+++..
T Consensus       158 ~L~~i~lp~~l~~I~~~a----F~~c~~L~~l~l~~  189 (401)
T 4fdw_A          158 TVQEIVFPSTLEQLKEDI----FYYCYNLKKADLSK  189 (401)
T ss_dssp             CCCEEECCTTCCEECSST----TTTCTTCCEEECTT
T ss_pred             CceEEEeCCCccEehHHH----hhCcccCCeeecCC
Confidence            466666654 11 33332    46788888888864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=84.86  E-value=0.083  Score=43.29  Aligned_cols=38  Identities=24%  Similarity=0.354  Sum_probs=24.8

Q ss_pred             CCCCccEEEeeeEEeChh-HHHHHHhcCCccceeecccC
Q 023267          152 SFSSLVSLRLIDVDIPEE-VLHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~-~l~~ll~~cp~Le~L~L~~c  189 (285)
                      .+|+|+.|+|++-.+++- .+..++..+|+|+.|+|++.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence            467777777777766542 24445566777777777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=84.35  E-value=0.2  Score=37.64  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             CCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEE
Q 023267          178 CPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVE  247 (285)
Q Consensus       178 cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~  247 (285)
                      .+.|+.|+|.+..- ..+.  .-....+|+.|.+++.. +..+.-    ..++|+.|.+.+....    -.+..+++|+.
T Consensus        29 ~~~l~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           29 PTTTQVLYLYDNQI-TKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEcCCCcC-CccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence            37899999987632 1111  01233578888888775 554432    4678888888776542    13567888999


Q ss_pred             EEEEcccc
Q 023267          248 MSIEGDYC  255 (285)
Q Consensus       248 l~l~~~~~  255 (285)
                      ++|++..+
T Consensus       107 L~L~~N~~  114 (170)
T 3g39_A          107 IWLLNNPW  114 (170)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCC
Confidence            98887543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=83.84  E-value=0.26  Score=37.27  Aligned_cols=76  Identities=14%  Similarity=0.172  Sum_probs=50.3

Q ss_pred             CCccceeecccCCCcceE--EEeCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCceEE
Q 023267          178 CPLLEVLTLKGAEKLIRI--RVSGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSLVE  247 (285)
Q Consensus       178 cp~Le~L~L~~c~~~~~~--~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L~~  247 (285)
                      .+.|+.|+|.+..- ..+  ..-...++|+.|.+++.. +..+.-    ..++|++|.+.+....    -.+..+++|+.
T Consensus        32 ~~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~  109 (174)
T 2r9u_A           32 PTDKQRLWLNNNQI-TKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH  109 (174)
T ss_dssp             CTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             CCCCcEEEeCCCCc-cccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCE
Confidence            38899999988642 111  111234578899998874 555532    4588999988776542    12567889999


Q ss_pred             EEEEcccc
Q 023267          248 MSIEGDYC  255 (285)
Q Consensus       248 l~l~~~~~  255 (285)
                      ++|++..+
T Consensus       110 L~L~~N~~  117 (174)
T 2r9u_A          110 IYLYNNPW  117 (174)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCc
Confidence            99987654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=83.19  E-value=0.58  Score=35.69  Aligned_cols=39  Identities=10%  Similarity=0.094  Sum_probs=28.0

Q ss_pred             CCCCccEEEeeeEEeChhHH---HHHHhcCCccceeecccCC
Q 023267          152 SFSSLVSLRLIDVDIPEEVL---HYLLCYCPLLEVLTLKGAE  190 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l---~~ll~~cp~Le~L~L~~c~  190 (285)
                      ..++|++|+|++..+++++.   ...+..++.|++|+|.++.
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            35778888888888887764   3445667788888887763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=80.62  E-value=0.22  Score=38.75  Aligned_cols=117  Identities=13%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             CCCCccEEEeeeE-EeChhHHH---HHHhcCCccceeecccCCCcc--eEEEeC---CCCceeEEEEecCCCCCeEEEeC
Q 023267          152 SFSSLVSLRLIDV-DIPEEVLH---YLLCYCPLLEVLTLKGAEKLI--RIRVSG---PSLKLKYLELRDLPNLSNLEINA  222 (285)
Q Consensus       152 ~~~~L~~L~L~~~-~i~~~~l~---~ll~~cp~Le~L~L~~c~~~~--~~~i~~---~~~~L~~L~i~~c~~l~~l~i~~  222 (285)
                      .-+.|++|+|.+. .|++++..   ..+..-..|++|+|.+|.--.  ...|..   ....|+.|.+.+.. +..-.+. 
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~-  116 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA-  116 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH-
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH-
Confidence            3456777777765 57666533   334455677777777653110  000100   11235555555442 1110000 


Q ss_pred             CCceEEEEecceeeeeecCCCceEEEEEEcc---ccc-hhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          223 PNLVSFEFSAGELIVSFKHVPSLVEMSIEGD---YCT-YFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       223 p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~---~~~-~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                                 ...-.+.....|++++|+..   .+. ....++.+.+..-+.|+.|++++..
T Consensus       117 -----------ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 -----------RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             -----------HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             -----------HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                       00112334556777777532   111 1123556666667777777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	6e-04

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 3  DRISKLPDDILICILSRLTIEEAARASILSYRWRY-------LWRFFTGSLDFVDPYKIR 55
          D I+ LP +I + I + L  E+   +  +S  W         LW+    S +FV P    
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFN 63

Query: 56 RLAILSDPYYK---CEDNYFIRVKRRNFIN 82
           L +     Y     +D   +      FI 
Sbjct: 64 SLNLKLSQKYPKLSQQDRLRLSFLENIFIL 93

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 3  DRISKLPDDILICILSRLTIEEAARASILSYRWRY------LWRFFTGSLDFVDPYKIRR 56
          D IS LP ++ + +LS L  ++  +A+     WR       LWR         +P  I+R
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKR 76

Query: 57 LAILSDP 63
            ++   
Sbjct: 77 RKVIKPG 83

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 6  SKLPDDILICILSRLTIEEAARASILSYRWRYL 38
            LPD++L+ I S L + E  + S +  RW  L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.98
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.93
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.8
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.79
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.64
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.08
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.55
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.31
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.08
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.07
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.01
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	96.95
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.79
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	95.4
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	95.13
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	95.04
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	94.92
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	94.62
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.51
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	94.05
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	93.82
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	92.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	89.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	89.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	88.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	87.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	86.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	85.06
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	84.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	83.68
d2ifga3	156	High affinity nerve growth factor receptor, N-term	83.21

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-12  Score=74.21  Aligned_cols=36  Identities=33%  Similarity=0.503  Sum_probs=33.5

Q ss_pred             CCCCChHHHHHHHhcCChhhHhhhcccccchhhhcc
Q 023267            5 ISKLPDDILICILSRLTIEEAARASILSYRWRYLWR   40 (285)
Q Consensus         5 is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw~   40 (285)
                      ++.||+||+.+||+||+.+|+++++.|||+|+++-.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999998754

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.2e-10  Score=80.50  Aligned_cols=37  Identities=32%  Similarity=0.482  Sum_probs=35.4

Q ss_pred             CCcCCCCChHHHHHHHhcCChhhHhhhcccccchhhh
Q 023267            2 DDRISKLPDDILICILSRLTIEEAARASILSYRWRYL   38 (285)
Q Consensus         2 ~D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~l   38 (285)
                      .|.|+.||+||+.+||+||+++|+++++.|||+|+.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999974

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=8.5e-11  Score=80.95  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=35.3

Q ss_pred             CCcCCCCChHHHHHHHhcCChhhHhhhcccccchhhhc
Q 023267            2 DDRISKLPDDILICILSRLTIEEAARASILSYRWRYLW   39 (285)
Q Consensus         2 ~D~is~LPd~iL~~Ils~L~~~d~~~~s~vs~rW~~lw   39 (285)
                      .|.|+.||+||+.+||+||+++|+++++.|||+|+++.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~   40 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   40 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999999998643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.3e-10  Score=93.12  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=90.0

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE---EeCCCCceeEEEEecCCCCCeEE------Ee
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR---VSGPSLKLKYLELRDLPNLSNLE------IN  221 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~---i~~~~~~L~~L~i~~c~~l~~l~------i~  221 (285)
                      ..|++|++|+|.++.+++..+.. +..||+|++|++.+|.++++..   +...+++|++|.+++|..+..-.      -.
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            46889999999999888887776 4678999999999998776532   33456789999999997654321      13


Q ss_pred             CCCceEEEEeccee-------eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          222 APNLVSFEFSAGEL-------IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       222 ~p~L~~l~~~~~~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      +|+|+.+.+.|...       .....++|+|+++++++.. ...+..+ ..+..+++|+.|+|+.+
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~-~itd~~~-~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV-MLKNDCF-QEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT-TCCGGGG-GGGGGCTTCCEEECTTC
T ss_pred             ccccchhhhccccccccccccccccccccccccccccccc-CCCchhh-hhhcccCcCCEEECCCC
Confidence            68999999886532       1123468999999997532 1222333 33467899999988753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.3e-10  Score=95.61  Aligned_cols=125  Identities=29%  Similarity=0.342  Sum_probs=72.4

Q ss_pred             CCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceE----EEeCCCCceeEEEEecCC-CCCe-----EEE
Q 023267          152 SFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRI----RVSGPSLKLKYLELRDLP-NLSN-----LEI  220 (285)
Q Consensus       152 ~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~----~i~~~~~~L~~L~i~~c~-~l~~-----l~i  220 (285)
                      .+++|++|+|+++. +++.++..+..+||+||+|++++|..+.+.    .+...+++|+.|.+.+|. .+..     +.-
T Consensus        93 ~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~  172 (284)
T d2astb2          93 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR  172 (284)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred             cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccc
Confidence            46777777777765 777777777777777777777777655432    122234567777777663 1221     112


Q ss_pred             eCCCceEEEEecce-e----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          221 NAPNLVSFEFSAGE-L----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       221 ~~p~L~~l~~~~~~-~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      .+|+|++|.+.+.. .    ...+..+++|+.+++.... ...+..+.. +..+|+|+.|++.
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~-~i~~~~l~~-L~~~~~L~~L~l~  233 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLE-LGEIPTLKTLQVF  233 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGG-GGGCTTCCEEECT
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCC-CCChHHHHH-HhcCCCCCEEeee
Confidence            46777777776532 1    1234566777777776521 122233333 3556777777653

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.9e-09  Score=76.41  Aligned_cols=36  Identities=33%  Similarity=0.476  Sum_probs=33.4

Q ss_pred             CcCCCCC----hHHHHHHHhcCChhhHhhhcccccchhhh
Q 023267            3 DRISKLP----DDILICILSRLTIEEAARASILSYRWRYL   38 (285)
Q Consensus         3 D~is~LP----d~iL~~Ils~L~~~d~~~~s~vs~rW~~l   38 (285)
                      |.|+.||    |||+.+|||||+++|++++++|||+|+++
T Consensus         9 D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            7888898    59999999999999999999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.2e-07  Score=68.32  Aligned_cols=121  Identities=17%  Similarity=0.139  Sum_probs=84.2

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEE----eCCCceE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEI----NAPNLVS  227 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~  227 (285)
                      ++..|++|+|++..|+.  +..+...++.|+.|+|+++. +..+.--...++|+.|.++++. +..+.-    ..|+|+.
T Consensus        16 n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCC-CCccCCcccCcchhhhhccccc-ccCCCcccccccccccc
Confidence            45689999999888754  33456778999999999873 3443222345789999999986 666532    5799999


Q ss_pred             EEEecceee-----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267          228 FEFSAGELI-----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       228 l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  276 (285)
                      |.+.+....     ..+..+|+|+.+++.+........--...+..+|+|+.|+
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            998876431     2356789999999998654322111123467789999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.71  E-value=1.2e-05  Score=62.18  Aligned_cols=119  Identities=16%  Similarity=0.113  Sum_probs=75.6

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEE
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSF  228 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l  228 (285)
                      ..+++|+.|++.+..+++  +.. +..+|.|+.|++.++....-..+ ...++++.+.+.++. +....  -..++|+.+
T Consensus        87 ~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~~~~~~~~~l-~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l  161 (210)
T d1h6ta2          87 ANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDINGL-VHLPQLESLYLGNNK-ITDITVLSRLTKLDTL  161 (210)
T ss_dssp             TTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCCGGG-GGCTTCCEEECCSSC-CCCCGGGGGCTTCSEE
T ss_pred             ccCccccccccccccccc--ccc-ccccccccccccccccccccccc-ccccccccccccccc-cccccccccccccccc
Confidence            457788888887777654  222 56678888888877643211111 123456677666553 32222  146889999


Q ss_pred             EEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          229 EFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       229 ~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      .+.+....  ..+.++++|+++++++.....    +. -+.++++|+.|+|+.
T Consensus       162 ~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~----l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISD----LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSSCCCB----CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccCCCCCCEEECCCCCCCC----Ch-hhcCCCCCCEEEccC
Confidence            88776542  236789999999998765432    11 257899999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.66  E-value=3.4e-06  Score=64.67  Aligned_cols=98  Identities=18%  Similarity=0.198  Sum_probs=45.1

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFE  229 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~  229 (285)
                      .+++|++|++.+..+..-.  . +.+++.|+.|++.++....... -...++|+.|.++++. +..+.  -..++|+.+.
T Consensus        82 ~l~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~  156 (199)
T d2omxa2          82 NLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLN  156 (199)
T ss_dssp             TCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEE
T ss_pred             CCccccccccccccccccc--c-cccccccccccccccccccccc-cchhhhhHHhhhhhhh-hcccccccccccccccc
Confidence            4555555555554432211  1 3455555655555543221111 1123455556555553 32222  1345666666


Q ss_pred             Eecceee--eeecCCCceEEEEEEccc
Q 023267          230 FSAGELI--VSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       230 ~~~~~~~--~~~~~~~~L~~l~l~~~~  254 (285)
                      +.+....  ..+.++++|+++++++..
T Consensus       157 l~~n~l~~l~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         157 FSSNQVTDLKPLANLTTLERLDISSNK  183 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cccccccCCccccCCCCCCEEECCCCC
Confidence            5544321  124556666666666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.57  E-value=1.5e-05  Score=60.96  Aligned_cols=140  Identities=14%  Similarity=0.137  Sum_probs=95.5

Q ss_pred             CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCC
Q 023267          121 KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGP  200 (285)
Q Consensus       121 ~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~  200 (285)
                      ++++++.+..+.-       -.++    ..+.+++|++|+|++..+++-.  . +.++|+|++|++.++....-..+ ..
T Consensus        40 ~~l~~L~l~~~~i-------~~l~----~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l-~~  104 (199)
T d2omxa2          40 DQVTTLQADRLGI-------KSID----GVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPL-AN  104 (199)
T ss_dssp             TTCCEEECTTSCC-------CCCT----TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGG-TT
T ss_pred             cCCCEEECCCCCC-------CCcc----ccccCCCcCcCccccccccCcc--c-ccCCccccccccccccccccccc-cc
Confidence            6888887653321       1121    2346899999999998876532  2 67899999999998753221112 34


Q ss_pred             CCceeEEEEecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEE
Q 023267          201 SLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLK  276 (285)
Q Consensus       201 ~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~  276 (285)
                      .++|+.|.+.++.. ..+.  ...|+|+.+.+++....  ..+..+++|+.+.+.+.......     -+..+++|+.|+
T Consensus       105 l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~-----~l~~l~~L~~L~  178 (199)
T d2omxa2         105 LTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK-----PLANLTTLERLD  178 (199)
T ss_dssp             CTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-----GGTTCTTCCEEE
T ss_pred             cccccccccccccc-ccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCc-----cccCCCCCCEEE
Confidence            56799999988863 2222  24689999999876542  23678999999999876543221     257899999999


Q ss_pred             EEEEe
Q 023267          277 LNLMA  281 (285)
Q Consensus       277 L~~~~  281 (285)
                      ++...
T Consensus       179 ls~N~  183 (199)
T d2omxa2         179 ISSNK  183 (199)
T ss_dssp             CCSSC
T ss_pred             CCCCC
Confidence            88653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.55  E-value=5.9e-06  Score=63.90  Aligned_cols=123  Identities=19%  Similarity=0.203  Sum_probs=85.7

Q ss_pred             CCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceE
Q 023267          150 TSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVS  227 (285)
Q Consensus       150 ~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~  227 (285)
                      ...+++|++|+|++..+++-  .. ++.+++|+.|++.++. +..+.--...++|+.|.+.++. ...+.  ...++++.
T Consensus        64 l~~l~~L~~L~L~~n~i~~l--~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~l~~  138 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES  138 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCCE
T ss_pred             HhhCCCCCEEeCCCccccCc--cc-cccCcccccccccccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence            34689999999999888653  22 4678999999999874 3332212345689999999885 33332  25688898


Q ss_pred             EEEeccee--eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEee
Q 023267          228 FEFSAGEL--IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMAV  282 (285)
Q Consensus       228 l~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~~  282 (285)
                      +.+.+...  ...+..+++|+.+.+.+......    .. +..+++|+.|+|+...+
T Consensus       139 l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i----~~-l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDI----VP-LAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC----GG-GTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccccccc----cc-ccCCCCCCEEECCCCCC
Confidence            88876543  22355689999999987654321    11 57899999999986543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.31  E-value=2.9e-05  Score=60.48  Aligned_cols=119  Identities=13%  Similarity=0.234  Sum_probs=60.9

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcce-----------EEEe----------CCCCceeEEEE
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIR-----------IRVS----------GPSLKLKYLEL  209 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~-----------~~i~----------~~~~~L~~L~i  209 (285)
                      ..+++|+.+.+.+..+++  +.. +..++.|+.|.+.+|.....           +.+.          ...++++.|.+
T Consensus        82 ~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  158 (227)
T d1h6ua2          82 KNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI  158 (227)
T ss_dssp             TTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccc--ccc-ccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccc
Confidence            456677777776665543  222 45667777777766542110           0000          11234555555


Q ss_pred             ecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          210 RDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       210 ~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      .++. +....  -..|+|+.+.+++....  ..+.++++|++++|++......  .   -+..+++|+.|+|+
T Consensus       159 ~~n~-~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i--~---~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         159 GNAQ-VSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV--S---PLANTSNLFIVTLT  225 (227)
T ss_dssp             CSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBC--G---GGTTCTTCCEEEEE
T ss_pred             cccc-cccchhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCC--c---ccccCCCCCEEEee
Confidence            5553 21111  13467777776654321  1245667777777766443211  1   14677777777764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.08  E-value=6.7e-05  Score=62.66  Aligned_cols=119  Identities=18%  Similarity=0.215  Sum_probs=67.9

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCC--cc---------eEEEe----------CCCCceeEEEE
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEK--LI---------RIRVS----------GPSLKLKYLEL  209 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~--~~---------~~~i~----------~~~~~L~~L~i  209 (285)
                      ..+++|+.|.+.+..+++-.  . +..++.|+.|++.++.-  +.         .+...          .....++.|.+
T Consensus       238 ~~l~~L~~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~l  314 (384)
T d2omza2         238 ASLTNLTDLDLANNQISNLA--P-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL  314 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred             hcccccchhccccCccCCCC--c-ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEEC
Confidence            45677777777776654422  1 55677777777765421  11         01110          11234556666


Q ss_pred             ecCCCCCeEE--EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          210 RDLPNLSNLE--INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       210 ~~c~~l~~l~--i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      +++. +..+.  -..|+|++|.+.+....  ..+.++++|+.+++++......    .. +.++++|+.|+|+
T Consensus       315 s~n~-l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l----~~-l~~l~~L~~L~L~  381 (384)
T d2omza2         315 YFNN-ISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDL----TP-LANLTRITQLGLN  381 (384)
T ss_dssp             CSSC-CSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBC----GG-GTTCTTCSEEECC
T ss_pred             CCCC-CCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCC----hh-hccCCCCCEeeCC
Confidence            6553 44432  25678888887765431  1366788888888876553221    11 4677888888764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.07  E-value=2.2e-06  Score=65.79  Aligned_cols=120  Identities=17%  Similarity=0.147  Sum_probs=60.7

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEE--EeCCCceEE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSF  228 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l  228 (285)
                      .+++|++|+|++..|++-  .. +.++++|+.|+|+++. +..+ .+....++|+.|.+.++. +..+.  ...++|+.|
T Consensus        46 ~L~~L~~L~Ls~n~I~~i--~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l~~L~~L  120 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKI--SS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVL  120 (198)
T ss_dssp             HTTTCCEEECSEEEESCC--CC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE-CCCHHHHHHHHHSSEE
T ss_pred             cccccceeECcccCCCCc--cc-ccCCccccChhhcccc-ccccccccccccccccccccccc-cccccccccccccccc
Confidence            345666666666555431  11 3445666666665542 1111 001111245555555542 33332  134667777


Q ss_pred             EEecceee-----eeecCCCceEEEEEEccccchhh------hH-HhhhhcCCCcceEEE
Q 023267          229 EFSAGELI-----VSFKHVPSLVEMSIEGDYCTYFV------YT-LHQFSSFLPQLRTLK  276 (285)
Q Consensus       229 ~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~------~~-~~~ll~~~~~L~~L~  276 (285)
                      .+.+....     ..+..+|+|+.+++++.......      .. ...++..+|+|+.|+
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            77654321     13567889999998865321110      11 123467789998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=5.3e-05  Score=60.46  Aligned_cols=120  Identities=16%  Similarity=0.050  Sum_probs=61.5

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcce-EEEeCCCCceeEEEEecCCCCCeEE----EeCCCce
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIR-IRVSGPSLKLKYLELRDLPNLSNLE----INAPNLV  226 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~-~~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~  226 (285)
                      .+++|++|+|++..++..  ...+...+.|+.|++.++....- ........+++.|.+.++. +..+.    ...++|+
T Consensus        75 ~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             CCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred             cccccccccccccccccc--ccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccch
Confidence            456666666665554321  12244556666666665432110 0111122345566665553 33332    1346777


Q ss_pred             EEEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          227 SFEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       227 ~l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      .+.+.+....    -.+..+++|+.|+|++........+    +...++|+.|.|+
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~----~~~~~~L~~L~L~  203 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLH  203 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCCCSEEECC
T ss_pred             hcccccccccccCccccccccccceeecccCCCcccChh----HCCCCCCCEEEec
Confidence            7777665432    1245678888888876554432222    2346677777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00023  Score=52.19  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=70.9

Q ss_pred             hcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceeee----eecCCCceEEE
Q 023267          176 CYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELIV----SFKHVPSLVEM  248 (285)
Q Consensus       176 ~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~~----~~~~~~~L~~l  248 (285)
                      ..+..|++|+|.++. ++.+ .+.....+|+.|.+++.. +..+.  -..|+|++|.+.+.....    .+..+++|+++
T Consensus        15 ~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          15 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcCcEEECCCCC-CCccCccccccccCCEEECCCCC-CCccCCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            467789999999874 2222 223345679999999985 66664  257899999998876532    23468999999


Q ss_pred             EEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          249 SIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       249 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      ++.+...... .++ ..+..+++|+.|+++..
T Consensus        93 ~L~~N~i~~~-~~l-~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          93 ILTNNSLVEL-GDL-DPLASLKSLTYLCILRN  122 (162)
T ss_dssp             ECCSCCCCCG-GGG-GGGGGCTTCCEEECCSS
T ss_pred             eecccccccc-ccc-cccccccccchhhcCCC
Confidence            9998665332 122 33578999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00025  Score=56.35  Aligned_cols=123  Identities=20%  Similarity=0.170  Sum_probs=63.7

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE----EeCCCceE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE----INAPNLVS  227 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~  227 (285)
                      .+++|++|+|.+..++.  +.. .+..|.|+.|+|.++.-..........++|+.|.+.++. ...+.    ...++++.
T Consensus        53 ~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~  128 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQE  128 (266)
T ss_dssp             TCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCE
T ss_pred             ccccccccccccccccc--ccc-ccccccccccccccccccccccccccccccccccccccc-cceeecccccccccccc
Confidence            45666666665554432  111 234566666666654321111122233455666665553 22221    12356666


Q ss_pred             EEEecceee----eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          228 FEFSAGELI----VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       228 l~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      +.+.+....    ..+..+++|+.+++++.......   ...+..+++|+.|+|+...
T Consensus       129 L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~---~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP---AGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC---TTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccceeccccccccccchhcccccccccccC---ccccccccccceeecccCC
Confidence            666554321    22345788888888876543321   2335778999999987543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.79  E-value=0.00019  Score=55.66  Aligned_cols=96  Identities=20%  Similarity=0.211  Sum_probs=63.8

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE--EeCCCceEEE
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFE  229 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~  229 (285)
                      ..+.++.+.+.+..+....   -+..++.|++|.+.++.......+ ...++|+.|.+.++. ++.+.  -..|+|++|.
T Consensus       127 ~~~~~~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~l-~~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~  201 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLTPL-ANLSKLTTLKADDNK-ISDISPLASLPNLIEVH  201 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGGG-TTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEE
T ss_pred             cccchhhhhchhhhhchhh---hhccccccccccccccccccchhh-cccccceecccCCCc-cCCChhhcCCCCCCEEE
Confidence            3455666666555443321   146788899999988743221122 345789999999884 66553  2579999999


Q ss_pred             Eecceee-e-eecCCCceEEEEEEc
Q 023267          230 FSAGELI-V-SFKHVPSLVEMSIEG  252 (285)
Q Consensus       230 ~~~~~~~-~-~~~~~~~L~~l~l~~  252 (285)
                      +.+.... + .+.++++|+.++|+.
T Consensus       202 Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         202 LKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             CcCCcCCCCcccccCCCCCEEEeeC
Confidence            9887542 2 367899999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.56  E-value=8.9e-05  Score=51.95  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=55.2

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEEEeCCCceEEEE
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLEINAPNLVSFEF  230 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~  230 (285)
                      ..+++|++|++++-.++.  +..-+..+++|+.|++.+.. +..+.--..                     .|+|+.+.+
T Consensus        17 ~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~---------------------l~~L~~L~l   72 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA-LENVDGVAN---------------------LPRLQELLL   72 (124)
T ss_dssp             GGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCCCGGGTT---------------------CSSCCEEEC
T ss_pred             ccCCCCCEEECCCCccCc--chhhhhhhhccccccccccc-ccccCcccc---------------------ccccCeEEC
Confidence            456788888888777653  32225678888888887752 221110012                     334444444


Q ss_pred             eccee-----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEE
Q 023267          231 SAGEL-----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTL  275 (285)
Q Consensus       231 ~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L  275 (285)
                      .+...     ...+..+++|+.+++.+........-...+...+|+|+.|
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            33221     1134567888888887655432222223455667777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.52  E-value=9.4e-05  Score=61.22  Aligned_cols=60  Identities=17%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             CCCceEEEEeccee--------eeeecCCCceEEEEEEccccchh-hhHHhhhhcC--CCcceEEEEEEEe
Q 023267          222 APNLVSFEFSAGEL--------IVSFKHVPSLVEMSIEGDYCTYF-VYTLHQFSSF--LPQLRTLKLNLMA  281 (285)
Q Consensus       222 ~p~L~~l~~~~~~~--------~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~ll~~--~~~L~~L~L~~~~  281 (285)
                      .|+|+.|.+.+...        ...+..+++|++++|+....... ...+...+..  .++|++|+|++..
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            46666666654432        11234566666666665443221 1222223322  3456666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.38  E-value=0.00024  Score=52.35  Aligned_cols=116  Identities=14%  Similarity=0.138  Sum_probs=60.6

Q ss_pred             CCCCccEEEeeeEE-eChhHHHHH---HhcCCccceeecccCCCcce---EEEe---CCCCceeEEEEecCCCCCeEEEe
Q 023267          152 SFSSLVSLRLIDVD-IPEEVLHYL---LCYCPLLEVLTLKGAEKLIR---IRVS---GPSLKLKYLELRDLPNLSNLEIN  221 (285)
Q Consensus       152 ~~~~L~~L~L~~~~-i~~~~l~~l---l~~cp~Le~L~L~~c~~~~~---~~i~---~~~~~L~~L~i~~c~~l~~l~i~  221 (285)
                      ..|.|++|+|.++. ++++++..+   +..++.|++|+|.+|.- ++   ..+.   ...+.|+.|.+++|. +..-.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l-~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~   90 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI-SDSEARGLIELIETSPSLRVLNVESNF-LTPELLA   90 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC-BHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccccc-chhHHHHHhhhhhhcccccceeeehhh-cchHHHH
Confidence            35677777777654 666664433   55667777777776631 11   0000   012234555555442 2110000


Q ss_pred             CCCceEEEEecceeeeeecCCCceEEEEEEccccch----hhhHHhhhhcCCCcceEEEEEEEe
Q 023267          222 APNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTY----FVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       222 ~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                                  ...-.+...+.|+++++.+.....    ....+..++...+.|+.|.++|+.
T Consensus        91 ------------~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          91 ------------RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             ------------HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             ------------HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                        001124466778888886543221    134566777778888888777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.00015  Score=61.66  Aligned_cols=99  Identities=17%  Similarity=0.242  Sum_probs=54.0

Q ss_pred             CccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE---EEe---CCCCceeEEEEecCCCCCe-----E----E
Q 023267          155 SLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI---RVS---GPSLKLKYLELRDLPNLSN-----L----E  219 (285)
Q Consensus       155 ~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~---~i~---~~~~~L~~L~i~~c~~l~~-----l----~  219 (285)
                      +|+.|++++..+++.++..++..+++|+.|+|.+|. +++.   .|.   ..++.|+.|+++++. +..     +    .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHh
Confidence            466666666666666666666666666666666663 2211   011   133456666665543 211     0    1


Q ss_pred             EeCCCceEEEEecceee--------eeecCCCceEEEEEEcccc
Q 023267          220 INAPNLVSFEFSAGELI--------VSFKHVPSLVEMSIEGDYC  255 (285)
Q Consensus       220 i~~p~L~~l~~~~~~~~--------~~~~~~~~L~~l~l~~~~~  255 (285)
                      ...++|++|.+.+....        -.+..+++|++++++....
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            12356888887655421        1245678888888876554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.91  E-value=0.0005  Score=50.46  Aligned_cols=116  Identities=15%  Similarity=0.116  Sum_probs=65.4

Q ss_pred             CCCCccEEEeeeEE-eChhHHHHHH---hcCCccceeecccCCCcceE---EEe---CCCCceeEEEEecCCCCCeEEEe
Q 023267          152 SFSSLVSLRLIDVD-IPEEVLHYLL---CYCPLLEVLTLKGAEKLIRI---RVS---GPSLKLKYLELRDLPNLSNLEIN  221 (285)
Q Consensus       152 ~~~~L~~L~L~~~~-i~~~~l~~ll---~~cp~Le~L~L~~c~~~~~~---~i~---~~~~~L~~L~i~~c~~l~~l~i~  221 (285)
                      +.|.|++|+|.++. ++++++..+.   ..++.|++|+|.+|. +++.   .+.   .....++.|.+.+|. +..-.+ 
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~-~~~~g~-   91 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI-   91 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH-
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhcccc-ccchhH-
Confidence            46788888888764 8787765543   477888888888873 2211   110   112345555555443 110000 


Q ss_pred             CCCceEEEEecceeeeeecCCCceEEEEEEccccchh---hhHHhhhhcCCCcceEEEEEEEe
Q 023267          222 APNLVSFEFSAGELIVSFKHVPSLVEMSIEGDYCTYF---VYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       222 ~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                                 ....-.+...+.|++++|+.......   ...+...+...++|++|++++..
T Consensus        92 -----------~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          92 -----------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             -----------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             -----------HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                       00012345677888777764332222   24556667788888888877643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.82  E-value=0.00072  Score=50.81  Aligned_cols=100  Identities=17%  Similarity=0.153  Sum_probs=67.6

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEEE----eCCCceEE
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLEI----NAPNLVSF  228 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l  228 (285)
                      +++++|+|++-.|+...-...+.+.++|++|+|.+..-..-. ..-...++|+.|.+++.. +..+.-    ..|+|+.|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCccccc
Confidence            689999999888754322334567899999999876422111 111234578888888774 665542    46889999


Q ss_pred             EEecceee----eeecCCCceEEEEEEccc
Q 023267          229 EFSAGELI----VSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       229 ~~~~~~~~----~~~~~~~~L~~l~l~~~~  254 (285)
                      .+.+....    -.+.++++|++++|++..
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             ccCCccccccCHHHhcCCcccccccccccc
Confidence            98876542    235678999999997654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0017  Score=51.73  Aligned_cols=122  Identities=17%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCC
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPN  224 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~  224 (285)
                      .++++|++|++.+..+.... ......++.|+.+++.+.. +..+.  .-+...+++.|.+.++. +..+.-    ..++
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~  178 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHS  178 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT
T ss_pred             cccccCCEEecCCccccccc-ccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCc-ccccchhhhccccc
Confidence            46678888888776643221 1234556778888877642 11111  11123467778777774 555432    3567


Q ss_pred             ceEEEEeccee----eeeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEE
Q 023267          225 LVSFEFSAGEL----IVSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       225 L~~l~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~  278 (285)
                      |+.+.+.+...    +-.+.++++|+.++++........   ...+..+++|+.|+|+
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP---TEALAPLRALQYLRLN  233 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---HHHHTTCTTCCEEECC
T ss_pred             cchhhhhhccccccChhHhhhhhhccccccccccccccc---ccccccccccCEEEec
Confidence            77777665432    223566788888888765543321   2234677778877765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.13  E-value=0.0019  Score=53.35  Aligned_cols=121  Identities=17%  Similarity=0.102  Sum_probs=69.9

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCC-----------CCeEE-
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPN-----------LSNLE-  219 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~-----------l~~l~-  219 (285)
                      .+++|++|++.+..+++-.   .+..++.|+.|++.++.- ..+.--...++|+.|.++++.-           +..+. 
T Consensus       217 ~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         217 ILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             ccCCCCEEECCCCCCCCcc---hhhcccccchhccccCcc-CCCCcccccccCCEeeccCcccCCCCccccccccccccc
Confidence            3566777777766655422   245677888888777531 1111112335666776655420           11111 


Q ss_pred             -----------EeCCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          220 -----------INAPNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       220 -----------i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                                 ...++++.+.+++....  ..+..+|+|+++++++......    . -+..+++|+.|+++...
T Consensus       293 ~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l----~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         293 NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV----S-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC----G-GGGGCTTCCEEECCSSC
T ss_pred             cccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCC----h-hHcCCCCCCEEECCCCc
Confidence                       13466777776655432  1356789999999987654321    1 25678999999987543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0018  Score=51.65  Aligned_cols=103  Identities=19%  Similarity=0.092  Sum_probs=61.6

Q ss_pred             HhcCCccceeecccCCCcce-EEEeCCCCceeEEEEecCCCCCeEEE----eCCCceEEEEecceee----eeecCCCce
Q 023267          175 LCYCPLLEVLTLKGAEKLIR-IRVSGPSLKLKYLELRDLPNLSNLEI----NAPNLVSFEFSAGELI----VSFKHVPSL  245 (285)
Q Consensus       175 l~~cp~Le~L~L~~c~~~~~-~~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~~l~~~~~~~~----~~~~~~~~L  245 (285)
                      +.++++|++|++.++..... ........+|+.+.+.+.. ++.+.-    ..++|+.|.+.+....    ..+.++++|
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhcccccc
Confidence            55677888888877642111 1112233456777776653 444421    4578888888775542    235578889


Q ss_pred             EEEEEEccccchhhhHHhhhhcCCCcceEEEEEEEe
Q 023267          246 VEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLMA  281 (285)
Q Consensus       246 ~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~~  281 (285)
                      +.+.+.........   ...+..+++|+.|+++...
T Consensus       180 ~~l~l~~N~l~~i~---~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         180 DRLLLHQNRVAHVH---PHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             CEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSC
T ss_pred             chhhhhhccccccC---hhHhhhhhhcccccccccc
Confidence            88888865543321   1235778889988887543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=94.92  E-value=0.00012  Score=55.70  Aligned_cols=102  Identities=17%  Similarity=0.113  Sum_probs=67.7

Q ss_pred             HHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE---EeCCCceEEEEecceee--eeecCCCceEEE
Q 023267          174 LLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE---INAPNLVSFEFSAGELI--VSFKHVPSLVEM  248 (285)
Q Consensus       174 ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~---i~~p~L~~l~~~~~~~~--~~~~~~~~L~~l  248 (285)
                      -++..++|++|+|+++. +..+.--....+|+.|.++++. +..+.   -..|+|+.|.+.+....  -.+..+++|+.+
T Consensus        43 sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L  120 (198)
T d1m9la_          43 TLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             HHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEE
T ss_pred             HHhcccccceeECcccC-CCCcccccCCccccChhhcccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            35678999999998763 2222111134579999998884 44432   23468999988776542  125568999999


Q ss_pred             EEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          249 SIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       249 ~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      +++.......  .-...+..+++|+.|.|+.
T Consensus       121 ~L~~N~i~~~--~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         121 YMSNNKITNW--GEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             EESEEECCCH--HHHHHHTTTTTCSEEEECS
T ss_pred             ccccchhccc--cccccccCCCccceeecCC
Confidence            9987654322  1123468899999999864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.62  E-value=0.0024  Score=52.37  Aligned_cols=127  Identities=19%  Similarity=0.142  Sum_probs=76.7

Q ss_pred             CCCCccEEEeeeEEeChhHHH---HHHhcCCccceeecccCCCcce-----E-EEeCCCCceeEEEEecCCCCCe-----
Q 023267          152 SFSSLVSLRLIDVDIPEEVLH---YLLCYCPLLEVLTLKGAEKLIR-----I-RVSGPSLKLKYLELRDLPNLSN-----  217 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~---~ll~~cp~Le~L~L~~c~~~~~-----~-~i~~~~~~L~~L~i~~c~~l~~-----  217 (285)
                      ..+.|+.+.+.+..++++++.   ..+..++.|++|+|.+|.--..     + ..-..+++|+.|.+.++. +..     
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~  234 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSA  234 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc-cccccccc
Confidence            456788888877777776643   4466788888888877642111     0 111234567888887764 321     


Q ss_pred             EE---EeCCCceEEEEecceee----e----ee--cCCCceEEEEEEccccchh-hhHHhhhh-cCCCcceEEEEEE
Q 023267          218 LE---INAPNLVSFEFSAGELI----V----SF--KHVPSLVEMSIEGDYCTYF-VYTLHQFS-SFLPQLRTLKLNL  279 (285)
Q Consensus       218 l~---i~~p~L~~l~~~~~~~~----~----~~--~~~~~L~~l~l~~~~~~~~-~~~~~~ll-~~~~~L~~L~L~~  279 (285)
                      +.   -.+|+|++|.+.+....    .    .+  ...+.|++++++....... ...+...+ ..+++|+.|+|+.
T Consensus       235 L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         235 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             ccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            11   14688888887665421    0    11  1357789999987665332 33444444 3678899888754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.51  E-value=0.0037  Score=50.12  Aligned_cols=122  Identities=15%  Similarity=0.101  Sum_probs=60.7

Q ss_pred             CCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceE-EEeCCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267          152 SFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSGPSLKLKYLELRDLPNLSNLEI----NAPNLV  226 (285)
Q Consensus       152 ~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~~~~~L~~L~i~~c~~l~~l~i----~~p~L~  226 (285)
                      .+++|+.+.+.+..++.-.    ...+++|++|++.++...... ..-.....++.|.++++. +..+..    ..|+|+
T Consensus       148 ~l~~L~~l~l~~n~l~~l~----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         148 GMKKLSYIRIADTNITTIP----QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLR  222 (305)
T ss_dssp             GCTTCCEEECCSSCCCSCC----SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCC
T ss_pred             cccccCccccccCCccccC----cccCCccCEEECCCCcCCCCChhHhhcccccccccccccc-ccccccccccccccce
Confidence            3556666666665543211    123567777777665322111 001123446666666653 444321    356777


Q ss_pred             EEEEeccee---eeeecCCCceEEEEEEccccchhhh---HHhhhhcCCCcceEEEEE
Q 023267          227 SFEFSAGEL---IVSFKHVPSLVEMSIEGDYCTYFVY---TLHQFSSFLPQLRTLKLN  278 (285)
Q Consensus       227 ~l~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~ll~~~~~L~~L~L~  278 (285)
                      +|.+.+...   +..+.++++|+.++|+.........   .........++|+.|+|+
T Consensus       223 ~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~  280 (305)
T d1xkua_         223 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF  280 (305)
T ss_dssp             EEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             eeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECC
Confidence            777766543   1234566777777776544332211   112234455666666664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0037  Score=52.61  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=17.7

Q ss_pred             CCCccEEEeeeEEeChhHHHHH---HhcCCccceeecccC
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYL---LCYCPLLEVLTLKGA  189 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~l---l~~cp~Le~L~L~~c  189 (285)
                      +++|+.|+|.++.+++++++.|   +..||+|++|+|+++
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N   65 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN   65 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC
Confidence            3445555555555554443322   345555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.05  E-value=0.0096  Score=40.99  Aligned_cols=56  Identities=20%  Similarity=0.114  Sum_probs=34.9

Q ss_pred             CCCceEEEEecceee--eeecCCCceEEEEEEccccchhhhHHhhhhcCCCcceEEEEEE
Q 023267          222 APNLVSFEFSAGELI--VSFKHVPSLVEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNL  279 (285)
Q Consensus       222 ~p~L~~l~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~  279 (285)
                      .++|+.+.+.+....  ..+..+++|+.++++....... .++ ..+..+++|+.|+++.
T Consensus        42 l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~-~~~-~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          42 LRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS-AAI-QPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSS-STT-GGGGGCTTCCEEECTT
T ss_pred             hhcccccccccccccccCccccccccCeEECCCCccCCC-CCc-hhhcCCCCCCEEECCC
Confidence            344455544443321  1367899999999998665322 111 3357899999998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.02  Score=43.81  Aligned_cols=79  Identities=19%  Similarity=0.163  Sum_probs=34.9

Q ss_pred             CCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEE----EeCCCceE
Q 023267          154 SSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLE----INAPNLVS  227 (285)
Q Consensus       154 ~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~  227 (285)
                      +++++|+|.+..++.-. ...+.++++|++|++.++.....+...  ....++++|.+..+..+..+.    -..|+|+.
T Consensus        29 ~~l~~L~Ls~n~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCCccC-hhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            35666666654432100 011345666666666655432221110  112345555555554333322    23456666


Q ss_pred             EEEecc
Q 023267          228 FEFSAG  233 (285)
Q Consensus       228 l~~~~~  233 (285)
                      +.+.+.
T Consensus       108 l~l~~~  113 (242)
T d1xwdc1         108 LLISNT  113 (242)
T ss_dssp             EEEESC
T ss_pred             cccchh
Confidence            655543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=92.76  E-value=0.0083  Score=48.21  Aligned_cols=123  Identities=17%  Similarity=0.152  Sum_probs=67.8

Q ss_pred             CceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccCCCcceE-EEeC
Q 023267          122 RVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGAEKLIRI-RVSG  199 (285)
Q Consensus       122 ~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~-~i~~  199 (285)
                      +|.+|++....-.    +...+|..+   ..+++|++|+|+++. +++. +-.-+..+++|++|+|.++.-.... ....
T Consensus        51 ~v~~L~L~~~~l~----g~~~lp~~l---~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~  122 (313)
T d1ogqa_          51 RVNNLDLSGLNLP----KPYPIPSSL---ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CEEEEEEECCCCS----SCEECCGGG---GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             EEEEEECCCCCCC----CCCCCChHH---hcCccccccccccccccccc-cccccccccccchhhhcccccccccccccc
Confidence            5777777654321    124667654   467899999998753 3321 2222677899999999887432111 1112


Q ss_pred             CCCceeEEEEecCCCCCeE---EEeCCCceEEEEecceee----eeecCCCce-EEEEEEc
Q 023267          200 PSLKLKYLELRDLPNLSNL---EINAPNLVSFEFSAGELI----VSFKHVPSL-VEMSIEG  252 (285)
Q Consensus       200 ~~~~L~~L~i~~c~~l~~l---~i~~p~L~~l~~~~~~~~----~~~~~~~~L-~~l~l~~  252 (285)
                      ...+|+.+.+.++.....+   .-..++|+.+.+.+....    ..+...+.+ +.+.+..
T Consensus       123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~  183 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             chhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccc
Confidence            2345777777665311111   114577788877665432    223344444 5555544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.84  E-value=0.056  Score=42.80  Aligned_cols=100  Identities=14%  Similarity=0.091  Sum_probs=63.4

Q ss_pred             HHhcCCccceeecccCCCcceEEEeCCCCceeEEEEecCCCCCeEE----EeCCCceEEEEecceee----eeecCCCce
Q 023267          174 LLCYCPLLEVLTLKGAEKLIRIRVSGPSLKLKYLELRDLPNLSNLE----INAPNLVSFEFSAGELI----VSFKHVPSL  245 (285)
Q Consensus       174 ll~~cp~Le~L~L~~c~~~~~~~i~~~~~~L~~L~i~~c~~l~~l~----i~~p~L~~l~~~~~~~~----~~~~~~~~L  245 (285)
                      .+..++.|+.+.+.++.. ..+. ....++++.|.+.++.. ....    -..+.++.+.+++....    ..+.++++|
T Consensus       145 ~~~~l~~L~~l~l~~n~l-~~l~-~~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNI-TTIP-QGLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  221 (305)
T ss_dssp             GGGGCTTCCEEECCSSCC-CSCC-SSCCTTCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             ccccccccCccccccCCc-cccC-cccCCccCEEECCCCcC-CCCChhHhhccccccccccccccccccccccccccccc
Confidence            356677888888877642 1111 11235688888887652 2221    14577888888765432    235578999


Q ss_pred             EEEEEEccccchhhhHHhhhhcCCCcceEEEEEEE
Q 023267          246 VEMSIEGDYCTYFVYTLHQFSSFLPQLRTLKLNLM  280 (285)
Q Consensus       246 ~~l~l~~~~~~~~~~~~~~ll~~~~~L~~L~L~~~  280 (285)
                      ++++|++.......    .-+..+++|+.|+|+..
T Consensus       222 ~~L~L~~N~L~~lp----~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         222 RELHLNNNKLVKVP----GGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             CEEECCSSCCSSCC----TTTTTCSSCCEEECCSS
T ss_pred             eeeecccccccccc----cccccccCCCEEECCCC
Confidence            99999886543321    23577899999998754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=89.71  E-value=0.091  Score=41.99  Aligned_cols=54  Identities=19%  Similarity=0.108  Sum_probs=36.9

Q ss_pred             CCCceeEEEEecCCCCCeEEEeCCCceEEEEecceeeeeecCCCceEEEEEEccc
Q 023267          200 PSLKLKYLELRDLPNLSNLEINAPNLVSFEFSAGELIVSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       200 ~~~~L~~L~i~~c~~l~~l~i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~~~  254 (285)
                      ..++|++|.+++|. +..+.-..|+|+.|.+.+....-.-..+++|+++++++..
T Consensus       282 ~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         282 LPPSLEELNVSNNK-LIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNP  335 (353)
T ss_dssp             CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             cCCCCCEEECCCCc-cCccccccCCCCEEECCCCcCCccccccCCCCEEECcCCc
Confidence            34678889888885 6666555688999888766543222235689999887644

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=88.64  E-value=0.069  Score=42.72  Aligned_cols=114  Identities=21%  Similarity=0.152  Sum_probs=70.4

Q ss_pred             HHHhCCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE
Q 023267          117 FAVDKRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR  196 (285)
Q Consensus       117 ~~~~~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~  196 (285)
                      .+...++++|++....       .-.+|.      ..++|++|+|++..++.     +-....+|++|++.++.. ..  
T Consensus        34 ~c~~~~l~~LdLs~~~-------L~~lp~------~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~l~~n~l-~~--   92 (353)
T d1jl5a_          34 DCLDRQAHELELNNLG-------LSSLPE------LPPHLESLVASCNSLTE-----LPELPQSLKSLLVDNNNL-KA--   92 (353)
T ss_dssp             HHHHHTCSEEECTTSC-------CSCCCS------CCTTCSEEECCSSCCSS-----CCCCCTTCCEEECCSSCC-SC--
T ss_pred             HHHHcCCCEEEeCCCC-------CCCCCC------CCCCCCEEECCCCCCcc-----cccchhhhhhhhhhhccc-ch--
Confidence            3344688888765332       234564      35789999998766653     223357899999987532 21  


Q ss_pred             EeCCCCceeEEEEecCCCCCeEE--EeCCCceEEEEecceeeeeecCCCceEEEEEEc
Q 023267          197 VSGPSLKLKYLELRDLPNLSNLE--INAPNLVSFEFSAGELIVSFKHVPSLVEMSIEG  252 (285)
Q Consensus       197 i~~~~~~L~~L~i~~c~~l~~l~--i~~p~L~~l~~~~~~~~~~~~~~~~L~~l~l~~  252 (285)
                      +..-.+.|++|.+.++. +..+.  ...++|+.+.+.+..........+.+..+.+..
T Consensus        93 l~~lp~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~  149 (353)
T d1jl5a_          93 LSDLPPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN  149 (353)
T ss_dssp             CCSCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             hhhhccccccccccccc-cccccchhhhccceeeccccccccccccccccccchhhcc
Confidence            22222458999998875 54443  246789999887665433333456666666643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.96  E-value=0.068  Score=39.33  Aligned_cols=81  Identities=19%  Similarity=0.145  Sum_probs=52.7

Q ss_pred             CCCCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEE--EeCCCCceeEEEEecCCCCCeEEE----eCCC
Q 023267          151 SSFSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIR--VSGPSLKLKYLELRDLPNLSNLEI----NAPN  224 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~--i~~~~~~L~~L~i~~c~~l~~l~i----~~p~  224 (285)
                      ..+++|++|+|.+..+..-. ...+...+.|++|+|++.. +..+.  .-...++|+.|.+.+.. +..+.-    ..++
T Consensus        51 ~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~  127 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNS  127 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTT
T ss_pred             CCCceEeeeecccccccccc-ccccccccccceeeecccc-ccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCcc
Confidence            35788999999887754322 2235567889999998763 22221  11234678888888875 666542    4578


Q ss_pred             ceEEEEecce
Q 023267          225 LVSFEFSAGE  234 (285)
Q Consensus       225 L~~l~~~~~~  234 (285)
                      |+++.+.+..
T Consensus       128 L~~l~L~~N~  137 (192)
T d1w8aa_         128 LTSLNLASNP  137 (192)
T ss_dssp             CCEEECTTCC
T ss_pred             cccccccccc
Confidence            8888887654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.43  E-value=0.11  Score=36.87  Aligned_cols=99  Identities=19%  Similarity=0.132  Sum_probs=61.3

Q ss_pred             CCCccEEEeeeEEeChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEEE----eCCCce
Q 023267          153 FSSLVSLRLIDVDIPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLEI----NAPNLV  226 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~i----~~p~L~  226 (285)
                      |...+.+++.+-.+.+. .. -+.+.++|++|++.+...++.+.-.  ...++|+.|.+.+.. +..+.-    ..++|+
T Consensus         7 c~~~~~l~c~~~~~~~~-p~-~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDS-LH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CSSSSCEECCSSCCCTT-TT-TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCC
T ss_pred             cCCCCeEEecCCCCccC-cc-cccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCccccccccccccc
Confidence            34455555544332221 11 1456788999999876655554422  234678999998885 666642    468999


Q ss_pred             EEEEecceee---eeecCCCceEEEEEEccc
Q 023267          227 SFEFSAGELI---VSFKHVPSLVEMSIEGDY  254 (285)
Q Consensus       227 ~l~~~~~~~~---~~~~~~~~L~~l~l~~~~  254 (285)
                      +|.+++....   ..+.....|+.++|++..
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ceeccCCCCcccChhhhccccccccccCCCc
Confidence            9998876542   122245578899997654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.06  E-value=0.21  Score=35.54  Aligned_cols=78  Identities=10%  Similarity=0.074  Sum_probs=51.1

Q ss_pred             ccHHHHHHHHHh--CCceEEEEEecCCCCCCCceeecCccccCCCCCCCccEEEeeeEEeChhHH---HHHHhcCCccce
Q 023267          109 YDVDSWVQFAVD--KRVQRLELDFSESKTEGHELHTFSPYFKTTSSFSSLVSLRLIDVDIPEEVL---HYLLCYCPLLEV  183 (285)
Q Consensus       109 ~~~~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~~~~p~~~~~~~~~~~L~~L~L~~~~i~~~~l---~~ll~~cp~Le~  183 (285)
                      ..++..+..+..  +.++++.+...... .+.....+...   +...+.|++|+|+++.+++++.   ...+..++.|+.
T Consensus         3 ~~i~~~l~~~~~~~~~L~~L~L~~~~~i-~~~~~~~l~~a---l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~   78 (166)
T d1io0a_           3 TDVEETLKRIQNNDPDLEEVNLNNIMNI-PVPTLKACAEA---LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKS   78 (166)
T ss_dssp             CCHHHHHHHHHTTCTTCCEEECTTCTTC-CHHHHHHHHHH---HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred             ccHHHHHHHHHhcCCCCcEEEcCCCCCC-CHHHHHHHHHH---HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchh
Confidence            346666776654  78888887532111 01111112211   2357899999999999998874   455778899999


Q ss_pred             eecccCC
Q 023267          184 LTLKGAE  190 (285)
Q Consensus       184 L~L~~c~  190 (285)
                      |++.+|.
T Consensus        79 l~l~~~~   85 (166)
T d1io0a_          79 LNVESNF   85 (166)
T ss_dssp             EECCSSC
T ss_pred             hhhcccc
Confidence            9999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.07  E-value=0.21  Score=37.71  Aligned_cols=37  Identities=14%  Similarity=0.150  Sum_probs=19.1

Q ss_pred             CCCCccEEEeeeEE-eChhHHHHHHhcCCccceeecccC
Q 023267          152 SFSSLVSLRLIDVD-IPEEVLHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       152 ~~~~L~~L~L~~~~-i~~~~l~~ll~~cp~Le~L~L~~c  189 (285)
                      .++.++++.+.... +.... ...+.++|.|++|.+.++
T Consensus        76 ~l~~l~~l~~~~~n~l~~~~-~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          76 NLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             SCTTCCEEEEECCTTCCEEC-TTSEECCTTCCEEEEESC
T ss_pred             cccccccccccccccccccc-cccccccccccccccchh
Confidence            35566666654432 11110 112456777777777765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.68  E-value=0.22  Score=35.56  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=18.8

Q ss_pred             CCCccEEEeeeEEeChhH---HHHHHhcCCccceeecccC
Q 023267          153 FSSLVSLRLIDVDIPEEV---LHYLLCYCPLLEVLTLKGA  189 (285)
Q Consensus       153 ~~~L~~L~L~~~~i~~~~---l~~ll~~cp~Le~L~L~~c  189 (285)
                      .+.|++|+|+++.+++++   +...+..++.|++|+|.+|
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehh
Confidence            344555555555555443   3333445555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=0.33  Score=34.21  Aligned_cols=79  Identities=19%  Similarity=0.126  Sum_probs=52.6

Q ss_pred             CCCCCccEEEeeeEE----eChhHHHHHHhcCCccceeecccCCCcceEEEe--CCCCceeEEEEecCCCCCeEE---Ee
Q 023267          151 SSFSSLVSLRLIDVD----IPEEVLHYLLCYCPLLEVLTLKGAEKLIRIRVS--GPSLKLKYLELRDLPNLSNLE---IN  221 (285)
Q Consensus       151 ~~~~~L~~L~L~~~~----i~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~i~--~~~~~L~~L~i~~c~~l~~l~---i~  221 (285)
                      ..+++|++|++.+..    ++.++    +.+.++|+.|+|.+.. +..+.-.  ...++|+.|.+++.. ++.+.   ..
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~  101 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQ  101 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTC
T ss_pred             cCccccCeeecCCCccccccCchh----hccccccCcceeeccc-cCCcccccccccccccceeccCCC-CcccChhhhc
Confidence            457899999997542    33433    4678999999999874 3333211  234679999998875 54443   24


Q ss_pred             CCCceEEEEeccee
Q 023267          222 APNLVSFEFSAGEL  235 (285)
Q Consensus       222 ~p~L~~l~~~~~~~  235 (285)
                      .++|++|.+.+...
T Consensus       102 ~~~l~~L~L~~Np~  115 (156)
T d2ifga3         102 GLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCCCEEECCSSCC
T ss_pred             cccccccccCCCcc
Confidence            56788888877644