Citrus Sinensis ID: 023278

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MAATAGSIFAASSQFASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEEEEEcccccccccccccccHHHccccccEEEEEcccccccccccEEEEEcccccccccccccEEEEcccccccccccccHHHHHHHHHcccccccEEEEEEEcccEEEEEEEccccccccccEEEEEEcccccccccHHHHHHHHHHHHHccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHcccccccccEEEcccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEEcccHHHHHHcccccHHHEEcccccEEEEccccccccccccEEEEEcccHHccccccHcEEEEcccccccccccccHHHHHHHHcccccccEEEEEEEccccEEEEEEEEcccccccccEEEEEEcccHHccccHHHHHHHHHHHHHHccccHHcEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAATAGSIFAASSQFasatrsvscrnatpsvsstlagssfkgaslprsspkqkktvRITGKVTAAVttatnpyeeieeytrpswamfelgkapvywktmnglppmsgeklkifynpyakkllpnedfgigfnggfnqpfmcggepramlrknrgqndspfytiqicvPKHAINLIFSFtngvewdgpyrikflvprawrnkpmdffnkGLADqlskdgacekaifpdtdvVVDRCVLIGNlaaeggdrcdlnlvpgcmdpssplydplanvddgscpldsdied
Flexible Loop (DISEMBL)
MAATAGSIFAASSQFASATRSVSCRNATPsvsstlagssfkgaslprsspkqkktvritgkvtaavttatnpyeeieeytrpswaMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFtngvewdgpyRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAaeggdrcdlnLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED
Low Complexity Region (SEG)
MAATagsifaassqfasatrsVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRITGKvtaavttatNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED
Disordered region (IsUnstruct)
********************************************************RITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPR***********SPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMD*************************
Disordered Region (DISOPRED)
**********ASSQ**************PSVSSTLAGSSFKGASLP*SSP***KTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP*********QNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSC*L******
Disordered Region (DISEMBL)
**********************************************************TGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED
Disordered Region (DISPRO)
***************ASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPL******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATAGSIFAASSQFASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
225442943	282	PREDICTED: uncharacterized protein LOC10	0.992	1.0	0.711	1e-118
255553199	279	conserved hypothetical protein [Ricinus	0.975	0.992	0.685	1e-113
224054336	286	predicted protein [Populus trichocarpa]	0.985	0.979	0.678	1e-110
114149950	277	chloroplast post-illumination chlorophyl	0.961	0.985	0.658	1e-108
357468177	280	hypothetical protein MTR_4g010140 [Medic	0.961	0.975	0.660	1e-107
359807532	277	uncharacterized protein LOC100790141 [Gl	0.964	0.989	0.643	1e-104
449509289	284	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.985	0.985	0.645	1e-102
449436138	284	PREDICTED: uncharacterized protein LOC10	0.985	0.985	0.645	1e-102
388501902	276	unknown [Lotus japonicus]	0.950	0.978	0.641	2e-99
356519306	272	PREDICTED: uncharacterized protein LOC10	0.957	1.0	0.637	1e-98

>gi|225442943|ref|XP_002266165.1| PREDICTED: uncharacterized protein LOC100264489 isoform 1 [Vitis vinifera] gi|225442945|ref|XP_002266207.1| PREDICTED: uncharacterized protein LOC100264489 isoform 2 [Vitis vinifera] gi|297743467|emb|CBI36334.3| unnamed protein product [Vitis vinifera]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/284 (71%), Positives = 237/284 (83%), Gaps = 2/284 (0%)

Query: 1   MAATAGSIFAASSQFASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRITG 60
           MAAT GSIFA+S+Q      SVS  N +PSV+  LA S+F GASL    PK  K V++TG
Sbjct: 1   MAATTGSIFASSTQRFPTVTSVSGTNGSPSVAGRLA-SNFMGASLRSRLPKMGKVVKVTG 59

Query: 61  KVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKK 120
           KV+AA   AT P EE +E   PSWAMFELG+APVYWKTMNGLPP SGEKLK+FYNP A K
Sbjct: 60  KVSAAAV-ATTPVEETKEVKLPSWAMFELGRAPVYWKTMNGLPPSSGEKLKLFYNPVASK 118

Query: 121 LLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTN 180
           L+PNEDFGIGFNGGFNQP MCGGEPRAML+K RG+ D P YTIQIC+PKHA+NLIFSFTN
Sbjct: 119 LVPNEDFGIGFNGGFNQPIMCGGEPRAMLKKARGKADRPIYTIQICIPKHAVNLIFSFTN 178

Query: 181 GVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGN 240
           G EWDGPY+++F VP+AWRNKP++FFN+GLA++LSK+GAC+KAIFPDT++V+DRC LIGN
Sbjct: 179 GTEWDGPYKLQFQVPKAWRNKPIEFFNQGLAEELSKEGACDKAIFPDTNIVIDRCALIGN 238

Query: 241 LAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED 284
           L  EGGDRC+L+ V GC DPSSPLY+PLANVDDGSCP++SD ED
Sbjct: 239 LTLEGGDRCNLDFVIGCTDPSSPLYNPLANVDDGSCPIESDSED 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553199|ref|XP_002517642.1| conserved hypothetical protein [Ricinus communis] gi|223543274|gb|EEF44806.1| conserved hypothetical protein [Ricinus communis]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/283 (68%), Positives = 240/283 (84%), Gaps = 6/283 (2%)

Query: 2   AATAGSIFAASSQFASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRITGK 61
           A+T+ S+F  ++Q  SATR +    A PSVS++L G++F GASL  SS K+ +TV+I+ +
Sbjct: 3   ASTSASLFKLATQPYSATRLIP---ANPSVSNSL-GTNFIGASLQVSSSKKNRTVKISRR 58

Query: 62  VTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKL 121
           VTAAV  A  P EEI EY  PSWAMFELG+APVYWKTMNGLPP SGEKLK+FYNP AKKL
Sbjct: 59  VTAAVVVAPTPSEEITEYALPSWAMFELGRAPVYWKTMNGLPPASGEKLKLFYNPAAKKL 118

Query: 122 LPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNG 181
            PN++FGIGFNGGFNQP MCGGEPRAML+K RG+ D P YTIQICVPKHA+NLIFSFTNG
Sbjct: 119 NPNKEFGIGFNGGFNQPIMCGGEPRAMLKKTRGKADPPIYTIQICVPKHAVNLIFSFTNG 178

Query: 182 VEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNL 241
           VEWDGPYR++F VP+ W+N+P++FFN+GLA++LSK+GAC++AIFPDT++V+DRC +IGNL
Sbjct: 179 VEWDGPYRLQFQVPKGWQNRPIEFFNEGLAEELSKEGACDRAIFPDTNIVIDRCAMIGNL 238

Query: 242 AAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED 284
           + EGGDRC+L+LVPGCMD +S LY+PLANVDDGSC +  D+ED
Sbjct: 239 SIEGGDRCNLDLVPGCMDTASHLYNPLANVDDGSCAI--DLED 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054336|ref|XP_002298209.1| predicted protein [Populus trichocarpa] gi|222845467|gb|EEE83014.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/286 (67%), Positives = 231/286 (80%), Gaps = 6/286 (2%)

Query: 1   MAATAGSIFAASSQ---FASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVR 57
           MAAT  SIF  S+Q   F     + +  NA PSVS+TLA SSF G+SL RS+ K+K+ V+
Sbjct: 1   MAATGASIFQISTQPRVFTRPITTANINNANPSVSNTLA-SSFIGSSLQRSTTKKKRAVK 59

Query: 58  ITGKVTAAVTTATN--PYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYN 115
           I  KV AA          EE++EY RP+WAMFELG APV+WKTMNGLPP SGE LK+FYN
Sbjct: 60  IGRKVIAAAAVTVATPSREEVKEYARPTWAMFELGSAPVFWKTMNGLPPSSGENLKLFYN 119

Query: 116 PYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLI 175
           P A KL+PNE+FGI FNGGFNQP MCGGEPRAMLRK RG+ D PFYTIQICVPKHA+NLI
Sbjct: 120 PAANKLVPNEEFGIAFNGGFNQPIMCGGEPRAMLRKVRGKADPPFYTIQICVPKHAVNLI 179

Query: 176 FSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRC 235
           FSFTNGV+WDGPYR++F V   WRNKP++FFN+GLA++LSK+GACEKAIFPDTD++V RC
Sbjct: 180 FSFTNGVDWDGPYRLQFQVHNGWRNKPIEFFNEGLAEELSKEGACEKAIFPDTDIIVTRC 239

Query: 236 VLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSD 281
            +IGNL+ EGGDRCDL+LV GCMDPSS LY+PLANVDDG+CP++ +
Sbjct: 240 AMIGNLSIEGGDRCDLDLVSGCMDPSSHLYNPLANVDDGTCPIEME 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114149950|gb|ABI51594.1| chloroplast post-illumination chlorophyll fluorescence increase protein [Nicotiana tabacum]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/275 (65%), Positives = 224/275 (81%), Gaps = 2/275 (0%)

Query: 10  AASSQFASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRITGKVTAAVTTA 69
           + ++   SATRS S  NATP+VS+  A +SF GA L R  P  +K VRI G + AA   A
Sbjct: 5   STNTSLFSATRSASNSNATPTVSNVYA-TSFMGAHLRRCYPATRKLVRINGGIVAAAV-A 62

Query: 70  TNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGI 129
           T+P EE++EY+ P+WA F+LG+APVYWKTMNGLPP +GE+LK+FYNP A  ++PNEDFGI
Sbjct: 63  TSPAEEVKEYSLPTWAKFDLGRAPVYWKTMNGLPPTAGERLKLFYNPAANNMVPNEDFGI 122

Query: 130 GFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYR 189
            FNGGFNQP MCGGEPRAML K RG+ D P YTIQIC+PKHA++LIFSFTNG EWDGPYR
Sbjct: 123 AFNGGFNQPIMCGGEPRAMLMKTRGKADPPIYTIQICIPKHALSLIFSFTNGTEWDGPYR 182

Query: 190 IKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRC 249
           ++F VP AWRNKP +FF +GLA +LS++GAC+KAIFPDT++V+ RC ++GNL+ EGGDRC
Sbjct: 183 LQFQVPNAWRNKPTEFFTEGLAGELSQEGACDKAIFPDTNIVITRCAMVGNLSVEGGDRC 242

Query: 250 DLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED 284
           DL++VPGC+DPSSP ++PLANVDDGSCP  SD ED
Sbjct: 243 DLDIVPGCIDPSSPYFNPLANVDDGSCPPYSDAED 277

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468177|ref|XP_003604373.1| hypothetical protein MTR_4g010140 [Medicago truncatula] gi|217073576|gb|ACJ85148.1| unknown [Medicago truncatula] gi|355505428|gb|AES86570.1| hypothetical protein MTR_4g010140 [Medicago truncatula] gi|388504280|gb|AFK40206.1| unknown [Medicago truncatula]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/283 (66%), Positives = 228/283 (80%), Gaps = 10/283 (3%)

Query: 1   MAATAGSIFAASSQ--FASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRI 58
           MAAT  SIFA+S+Q  F+  TRS S  N          GS+F   SLPR  P +++ V++
Sbjct: 1   MAATNASIFASSTQPCFSVTTRSHSITNTF--------GSNFLNVSLPRCYPMKERHVKV 52

Query: 59  TGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYA 118
              V AA   AT+P EEI+EY  PSWAMFELGKA VYWKT NG+ P SGEKLK+FYNP A
Sbjct: 53  RHVVNAAAAVATSPTEEIQEYKLPSWAMFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAA 112

Query: 119 KKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSF 178
            +L PNE+FGI FNGGFNQP MCGGEPRAMLRK+RG+ DSP Y+IQICVPKHA+NLIFSF
Sbjct: 113 AQLAPNEEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADSPIYSIQICVPKHALNLIFSF 172

Query: 179 TNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLI 238
           TNGV+WDGPYR++F VP+  +NKP++FFN+GLA++LSK+GACE+AIFPDT  V+++C +I
Sbjct: 173 TNGVDWDGPYRLQFQVPKPLQNKPIEFFNEGLAEELSKEGACEQAIFPDTTAVIEKCAMI 232

Query: 239 GNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSD 281
           GNL+ EGGDRC+LNLVPGC+DPSSPLYDP+ANVDDGSCP++ D
Sbjct: 233 GNLSKEGGDRCELNLVPGCIDPSSPLYDPMANVDDGSCPIEVD 275

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807532|ref|NP_001240893.1| uncharacterized protein LOC100790141 [Glycine max] gi|255639039|gb|ACU19820.1| unknown [Glycine max]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/283 (64%), Positives = 224/283 (79%), Gaps = 9/283 (3%)

Query: 1   MAATAGSIFAASSQFASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRITG 60
           MAAT  SIFA+S+Q        SC   +P++S+TL  S F   S PRS   +KK V+ + 
Sbjct: 1   MAATNASIFASSTQ--------SCLPVSPTISNTLV-SPFLNVSSPRSYLVKKKHVKFSK 51

Query: 61  KVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKK 120
            ++AA    T   EEI+EY  PSWA FE+G+A VYWKTMNGLPP SGEKLK+FYNP A +
Sbjct: 52  HISAAAVATTTTTEEIQEYKLPSWAKFEIGRAAVYWKTMNGLPPSSGEKLKLFYNPAATQ 111

Query: 121 LLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTN 180
           L+PNE+FGI FNGGFNQP MCGGEPRAMLRK RG+ D+P Y+IQIC+PKHA+NLIFSFTN
Sbjct: 112 LVPNEEFGIAFNGGFNQPIMCGGEPRAMLRKYRGKADAPIYSIQICIPKHALNLIFSFTN 171

Query: 181 GVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGN 240
           GV+WDGPYR++F VP+A +NKP+DFFNKGLA++LSK+GACE+AIFPDT+ V+ +C +IGN
Sbjct: 172 GVDWDGPYRLQFQVPKALQNKPIDFFNKGLAEELSKEGACEQAIFPDTNKVITKCAMIGN 231

Query: 241 LAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIE 283
           L+ EGGDRCDLN V GC DPSS LY+PLANVDDG+C ++ D E
Sbjct: 232 LSKEGGDRCDLNFVVGCTDPSSHLYNPLANVDDGTCTIELDSE 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509289|ref|XP_004163546.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101207565 [Cucumis sativus]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/288 (64%), Positives = 223/288 (77%), Gaps = 8/288 (2%)

Query: 1   MAATAGSIFAAS----SQFASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTV 56
           MAAT   IFA+S        +  R  SC  +T ++ S ++GSS     LP +   + +TV
Sbjct: 1   MAATNAPIFASSFPTSLPITTQRRGESCPQSTRTLGSGISGSS-FSKCLPNNKDVRFRTV 59

Query: 57  RITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNP 116
           R   KV AAV    +P EE+ E   PSW +FELGKAPVYWKT+NGLPP +GEKLK+FYNP
Sbjct: 60  R---KVNAAVAVEASPAEEMTEIKLPSWTLFELGKAPVYWKTVNGLPPTAGEKLKLFYNP 116

Query: 117 YAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIF 176
            A  L PN+DFGI FNGGFNQP MCGGEPRAMLRK+RG+ D P YTIQIC+PKHAINLIF
Sbjct: 117 AATNLAPNDDFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADGPIYTIQICIPKHAINLIF 176

Query: 177 SFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCV 236
           SFTNG +WDGPYR++F VP+AW+NKP+DFFN+GLA++LSK+GAC++AIFPDT VVV RC 
Sbjct: 177 SFTNGTDWDGPYRLQFXVPKAWQNKPIDFFNQGLAEELSKEGACDRAIFPDTSVVVTRCA 236

Query: 237 LIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED 284
           +IGNL  EGGDRCDLNLV GC DPSS L++PLANVDDGSCP+D+D ED
Sbjct: 237 MIGNLTVEGGDRCDLNLVLGCTDPSSHLFNPLANVDDGSCPIDTDTED 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436138|ref|XP_004135851.1| PREDICTED: uncharacterized protein LOC101207565 [Cucumis sativus]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/288 (64%), Positives = 223/288 (77%), Gaps = 8/288 (2%)

Query: 1   MAATAGSIFAAS----SQFASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTV 56
           MAAT   IFA+S        +  R  SC  +T ++ S ++GSS     LP +   + +TV
Sbjct: 1   MAATNAPIFASSFPTSLPITTQRRGESCPQSTRTLGSGISGSS-FSKCLPNNKDVRFRTV 59

Query: 57  RITGKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNP 116
           R   KV AAV    +P EE+ E   PSW +FELGKAPVYWKT+NGLPP +GEKLK+FYNP
Sbjct: 60  R---KVNAAVAVEASPAEEMTEIKLPSWTLFELGKAPVYWKTVNGLPPTAGEKLKLFYNP 116

Query: 117 YAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIF 176
            A  L PN+DFGI FNGGFNQP MCGGEPRAMLRK+RG+ D P YTIQIC+PKHAINLIF
Sbjct: 117 AATNLAPNDDFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADGPIYTIQICIPKHAINLIF 176

Query: 177 SFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCV 236
           SFTNG +WDGPYR++F VP+AW+NKP+DFFN+GLA++LSK+GAC++AIFPDT VVV RC 
Sbjct: 177 SFTNGTDWDGPYRLQFQVPKAWQNKPIDFFNQGLAEELSKEGACDRAIFPDTSVVVTRCA 236

Query: 237 LIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED 284
           +IGNL  EGGDRCDLNLV GC DPSS L++PLANVDDGSCP+D+D ED
Sbjct: 237 MIGNLTVEGGDRCDLNLVLGCTDPSSHLFNPLANVDDGSCPIDTDTED 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501902|gb|AFK39017.1| unknown [Lotus japonicus]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 181/282 (64%), Positives = 222/282 (78%), Gaps = 12/282 (4%)

Query: 1   MAATAGSIFAASS-QFASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRIT 59
           MAAT  SIFA+S+ Q     R          + +TLA S+F   SLPR    +++ V++T
Sbjct: 1   MAATNASIFASSTTQPCLPIR----------IPNTLA-STFLNVSLPRCYLVKERNVKVT 49

Query: 60  GKVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAK 119
             + AAV  AT P +EIEEY  PSWA FELGKA VYWKTMNGLPP SGEKLK+FYNP + 
Sbjct: 50  RTINAAVAVATTPAQEIEEYKIPSWANFELGKASVYWKTMNGLPPTSGEKLKLFYNPTST 109

Query: 120 KLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFT 179
           +L PNE+FGI FNGGFNQP MCGGEPRAMLRK+RG+ D+P Y+IQICVPKHA+NLIFSFT
Sbjct: 110 QLAPNEEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADAPIYSIQICVPKHALNLIFSFT 169

Query: 180 NGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIG 239
           NGV+WDGPYR++F VP+  +NKP++FFN+GLA++L K+GACE+AIFPD++ V+ +C ++G
Sbjct: 170 NGVDWDGPYRLQFQVPKVLQNKPIEFFNEGLAEELGKEGACEQAIFPDSNKVITKCAMLG 229

Query: 240 NLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSD 281
           NL  EGGDRCDLNLV GC DPSS LY+PLANVDDG+CPLD D
Sbjct: 230 NLTVEGGDRCDLNLVEGCTDPSSHLYNPLANVDDGTCPLDLD 271

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519306|ref|XP_003528314.1| PREDICTED: uncharacterized protein LOC100818459 [Glycine max]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/281 (63%), Positives = 223/281 (79%), Gaps = 9/281 (3%)

Query: 1   MAATAGSIFAASSQFASATRSVSCRNATPSVSSTLAGSSFKGASLPRSSPKQKKTVRITG 60
           MAAT  SIFA+S+Q         C    P++ +TLA + F   S PRS   +KK V+ + 
Sbjct: 1   MAATNASIFASSTQ--------PCLPVPPTIPNTLA-TPFLNVSSPRSYLVKKKHVKFSK 51

Query: 61  KVTAAVTTATNPYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKK 120
           K++AA    T   EEI+EY  PSWA FE+G+A VYWKTMNGLPP SGEKLK+FYNP A +
Sbjct: 52  KISAAAVATTTTTEEIQEYKLPSWAKFEIGRAAVYWKTMNGLPPTSGEKLKLFYNPAATQ 111

Query: 121 LLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTN 180
           L+PNE+FGI FNGGFNQP MCGGEPRAMLRK+RG+ D+P Y+IQIC+PKHA+NLIFSFTN
Sbjct: 112 LVPNEEFGIAFNGGFNQPIMCGGEPRAMLRKDRGKADAPIYSIQICIPKHALNLIFSFTN 171

Query: 181 GVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGN 240
           GV+WDGPYR++F VP+A +NKP+DFFNKGLA++LSK+GACE+AIFPDT+ ++ +C +IGN
Sbjct: 172 GVDWDGPYRLQFQVPKALQNKPIDFFNKGLAEELSKEGACEQAIFPDTNKIITKCAMIGN 231

Query: 241 LAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSD 281
           L+ EGGDRCDLN V GC DPSS LY+PLANVDDG+C ++ D
Sbjct: 232 LSKEGGDRCDLNFVLGCTDPSSHLYNPLANVDDGTCTIELD 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
TAIR|locus:2093287	268	PIFI "AT3G15840" [Arabidopsis	0.75	0.794	0.714	2.2e-89

TAIR|locus:2093287 PIFI "AT3G15840" [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 153/214 (71%), Positives = 187/214 (87%)

Query:    72 PYEEIEEYTRPSWAMFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGF 131
             P EEI+EY  PSWAMFE+G APVYWKTMNGLPP SGEKLK+FYNP A KL  NED+G+ F
Sbjct:    55 PLEEIKEYKLPSWAMFEMGTAPVYWKTMNGLPPTSGEKLKLFYNPAASKLTLNEDYGVAF 114

Query:   132 NGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIK 191
             NGGFNQP MCGGEPRAML+K+RG+ DSP YT+QIC+PKHA+NLIFSFTNGV+WDGPYR++
Sbjct:   115 NGGFNQPIMCGGEPRAMLKKDRGKADSPIYTMQICIPKHAVNLIFSFTNGVDWDGPYRLQ 174

Query:   192 FLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDL 251
             F VP+ W+NKP++FFN+GLA++LS+DGACE+AIFPD++VV  RC +I NL  EGGDRC+L
Sbjct:   175 FQVPKRWQNKPIEFFNEGLANELSQDGACERAIFPDSNVVPTRCTMIANLTVEGGDRCNL 234

Query:   252 NLVPGCMDPSSPLYDPLANVDDGSCPLD-SDIED 284
             +LVPGCMD +S  ++P ANVDDGSCPL+ SD ++
Sbjct:   235 DLVPGCMDTNSEHFNPYANVDDGSCPLELSDSDE 268


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.138   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      284       258   0.00087  114 3  11 22  0.49    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  220 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.45u 0.14s 21.59t   Elapsed:  00:00:01
  Total cpu time:  21.45u 0.14s 21.59t   Elapsed:  00:00:01
  Start:  Mon May 20 20:40:28 2013   End:  Mon May 20 20:40:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010478 "chlororespiration" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_I0106	SubName- Full=Putative uncharacterized protein; (286 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.02080025	hypothetical protein (465 aa)				•			•		0.410

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	97.6
PLN02316	1036	synthase/transferase	96.47
PLN02316	1036	synthase/transferase	96.16

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=97.60  E-value=7.8e-05  Score=56.89  Aligned_cols=76  Identities=25%  Similarity=0.528  Sum_probs=39.5

Q ss_pred             CCceEEEEccccCCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEeecC-CCCC
Q 023278          107 GEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNG-VEWD  185 (284)
Q Consensus       107 Ge~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGEPR~M~~k~RGkad~PiYtI~I~vPkHa~~LiFSFTnG-~~WD  185 (284)
                      |+.++|||||..+.|.-..  -|=+-+|||. -. ....-.|.+... .....-++..|.||+.|..|.|-|+|| -.||
T Consensus         1 G~~vtVyYn~~~~~l~g~~--~v~~~~G~n~-W~-~~~~~~m~~~~~-~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wD   75 (87)
T PF03423_consen    1 GETVTVYYNPSLTALSGAP--NVHLHGGFNR-WT-HVPGFGMTKMCV-PDEGGWWKATVDVPEDAYVMDFVFNDGAGNWD   75 (87)
T ss_dssp             -SEEEEEE---E-SSS-S---EEEEEETTS--B--SSS-EE-EEESS----TTEEEEEEE--TTTSEEEEEEE-SSS-EE
T ss_pred             CCEEEEEEEeCCCCCCCCC--cEEEEecCCC-CC-cCCCCCcceeee-eecCCEEEEEEEEcCCceEEEEEEcCCCCcEe
Confidence            7899999999877775222  2444455542 11 111223433221 111678999999999999999999998 4788


Q ss_pred             Cc
Q 023278          186 GP  187 (284)
Q Consensus       186 Gp  187 (284)
                      --
T Consensus        76 NN   77 (87)
T PF03423_consen   76 NN   77 (87)
T ss_dssp             ST
T ss_pred             CC
Confidence            53

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>PLN02316 synthase/transferase

Probab=96.47  E-value=0.0071  Score=64.17  Aligned_cols=93  Identities=20%  Similarity=0.352  Sum_probs=69.1

Q ss_pred             CCCCCCCCCceEEEEccccCCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEee
Q 023278          100 NGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFT  179 (284)
Q Consensus       100 nGlpP~sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGEPR~M~~k~RGkad~PiYtI~I~vPkHa~~LiFSFT  179 (284)
                      ....|-+|+.++|||||+-+.|.-.+  -|=+.||||.=..-.+.+-.|.+-+.+.-+  .+.-.|.||+-|..|-|-|+
T Consensus       321 ~P~~~~aG~~v~lyYN~~~~~L~~~~--~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~--ww~a~v~vP~~A~~mDfVFs  396 (1036)
T PLN02316        321 EPSEFKAGDTVKLYYNRSSGPLAHST--EIWIHGGYNNWIDGLSIVEKLVKSEEKDGD--WWYAEVVVPERALVLDWVFA  396 (1036)
T ss_pred             cCCCcCCCCEEEEEECCCCCCCCCCC--cEEEEEeEcCCCCCCcccceeecccCCCCC--EEEEEEecCCCceEEEEEEe
Confidence            35678999999999999999996433  467788888644333322234443433333  88999999999999999999


Q ss_pred             cC-----CCCCCceeEEEecCc
Q 023278          180 NG-----VEWDGPYRIKFLVPR  196 (284)
Q Consensus       180 nG-----~~WDGpY~L~f~VP~  196 (284)
                      ||     ..||--....|.+|=
T Consensus       397 dg~~~~~~~yDNn~~~Dyh~~v  418 (1036)
T PLN02316        397 DGPPGNARNYDNNGRQDFHAIV  418 (1036)
T ss_pred             cCCcccccccccCCCcceeeec
Confidence            99     699988777776654

>PLN02316 synthase/transferase

Probab=96.16  E-value=0.011  Score=62.88  Aligned_cols=124  Identities=21%  Similarity=0.330  Sum_probs=87.6

Q ss_pred             CCCCCCCCCceEEEEccccCCCCCCCceeeeecCCCCCccccCC--chhhhhhhhhCCCCCCceEEEeeeccceeeEEEE
Q 023278          100 NGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGG--EPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFS  177 (284)
Q Consensus       100 nGlpP~sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGG--EPR~M~~k~RGkad~PiYtI~I~vPkHa~~LiFS  177 (284)
                      .=+-|.+|+.++|||||.-+-|.-..+  |=|-||||.=.---|  .|-.|.+.+-|    .-+.-.|.||.-|..+-|-
T Consensus       483 eP~~~~aG~~v~v~Yn~~~t~l~~~~e--v~~~g~~NrWth~~~~~~~~~m~~~~~g----~~~~a~v~vP~da~~mdfv  556 (1036)
T PLN02316        483 EPLEVQAGTTVTVLYNPANTVLNGKPE--VWFRGSFNRWTHRLGPLPPQKMVPADNG----SHLKATVKVPLDAYMMDFV  556 (1036)
T ss_pred             cCCCCCCCCEEEEEECCCCCcCCCCce--EEEEccccCcCCCCCCCCceeeeecCCC----ceEEEEEEccccceEEEEE
Confidence            345689999999999999888875544  779999997555555  58888888766    5778999999999999999


Q ss_pred             eecCC---CCCCceeEEEecCcc---------------cccCCh------hhhhhhHHHhhhccCcccccccCCCc
Q 023278          178 FTNGV---EWDGPYRIKFLVPRA---------------WRNKPM------DFFNKGLADQLSKDGACEKAIFPDTD  229 (284)
Q Consensus       178 FTnG~---~WDGpY~L~f~VP~~---------------~~nkP~------~fFnegLa~eLs~eGACd~AIfPd~~  229 (284)
                      |.+|-   .||--....+.+|-.               +---|.      .=.=-+|+++|.+.|.--.-|-|.-.
T Consensus       557 Fs~~~~g~~yDn~~~~dyh~~v~g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~  632 (1036)
T PLN02316        557 FSEKEEGGIFDNRNGLDYHIPVFGGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD  632 (1036)
T ss_pred             EecCCCCCCcCCCCCcCCcccccCCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence            96653   476655554444321               111121      12336788999999976566666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
2c3v_A	102	Alpha-amylase G-6; carbohydrate-binding module, st	93.24
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	91.65

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*

Probab=93.24  E-value=0.086  Score=41.38  Aligned_cols=71  Identities=17%  Similarity=0.359  Sum_probs=44.8

Q ss_pred             CCCCCceEEEEccccCCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEeecCC-
Q 023278          104 PMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGV-  182 (284)
Q Consensus       104 P~sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGEPR~M~~k~RGkad~PiYtI~I~vPkHa~~LiFSFTnG~-  182 (284)
                      |..|+..+|||+..  -=.++-.||.+- |.+.+.=   |  -.|.+.    .|.=-|...|.+|. +-.|+|-|+||. 
T Consensus         6 p~~g~~vTvyY~sg--~~~~ylHy~~~~-g~Wt~vp---g--v~M~~~----~~~Gw~~~TI~~~~-~~~l~~~F~dG~~   72 (102)
T 2c3v_A            6 SGDATDITIYYKTG--WTHPHIHYSLNQ-GAWTTLP---G--VPLTKS----EXEGXVKVTIEAEE-GSQLRAAFNNGSG   72 (102)
T ss_dssp             --CCCSEEEEEECC--CSSCEEEEEETT-CCBCCTT---C--EECEEC----SSTTEEEEEECCCT-TCEEEEEEECSSS
T ss_pred             CCCCCEEEEEEcCC--CCcEEEEEeCCC-CCcccCC---C--cCcccc----ccCCceEEEEecCC-CceEEEEEeCCCc
Confidence            34499999999933  334556666322 3465531   1  124332    24445688899984 689999999999 


Q ss_pred             CCCCc
Q 023278          183 EWDGP  187 (284)
Q Consensus       183 ~WDGp  187 (284)
                      .||-.
T Consensus        73 ~WDNN   77 (102)
T 2c3v_A           73 QWDNN   77 (102)
T ss_dssp             CEECG
T ss_pred             ccccC
Confidence            79954

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=91.65  E-value=0.12  Score=40.68  Aligned_cols=68  Identities=22%  Similarity=0.388  Sum_probs=44.5

Q ss_pred             CCCceEEEEccccCCCCCCCceeeeecCCCCCccccCCchh-hhhhhhhCCCCCCce-EEEeeeccceeeEEEEeecCC-
Q 023278          106 SGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPR-AMLRKNRGQNDSPFY-TIQICVPKHAINLIFSFTNGV-  182 (284)
Q Consensus       106 sGe~L~lfyNp~as~l~PNe~fGiaFNGGFNQPIMCGGEPR-~M~~k~RGkad~PiY-tI~I~vPkHa~~LiFSFTnG~-  182 (284)
                      .|+.++|||++.+++.  .-.||.+- |..+++      |= .|.+.     .-|-| +..|.||. +..|+|-|+||. 
T Consensus         3 ~g~~vtiyY~~g~~~v--ylHyg~~~-g~Wt~~------~~v~M~~~-----~~~gw~~~TI~l~~-g~~~~~~F~dG~~   67 (104)
T 2laa_A            3 TGNKVTIYYKKGFNSP--YIHYRPAG-GSWTAA------PGVKMQDA-----EISGYAKITVDIGS-ASQLEAAFNDGNN   67 (104)
T ss_dssp             CCCEEEEEEECSSSSC--EEEEEETT-SCCCSS------SCEECEEE-----TTTTEEEEEEECTT-CSCEEEEEECSSS
T ss_pred             CCCEEEEEEcCCCCcE--EEEEcCCC-CCCCcC------Cccccccc-----cCCCeEEEEEECCC-CCEEEEEEeCCCC
Confidence            4899999999755543  33555222 456653      21 23222     11567 69999996 689999999998 


Q ss_pred             CCCCce
Q 023278          183 EWDGPY  188 (284)
Q Consensus       183 ~WDGpY  188 (284)
                      .||-.-
T Consensus        68 ~WDNn~   73 (104)
T 2laa_A           68 NWDSNN   73 (104)
T ss_dssp             CEESTT
T ss_pred             cCcCCC
Confidence            799653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00