Citrus Sinensis ID: 023288
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 284 | 2.2.26 [Sep-21-2011] | |||||||
| Q5PP70 | 276 | Alpha N-terminal protein | no | no | 0.721 | 0.742 | 0.725 | 4e-86 | |
| A2XMJ1 | 307 | Alpha N-terminal protein | N/A | no | 0.732 | 0.677 | 0.571 | 1e-75 | |
| Q10CT5 | 307 | Alpha N-terminal protein | no | no | 0.732 | 0.677 | 0.567 | 2e-74 | |
| Q4KL94 | 224 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.612 | 0.776 | 0.434 | 2e-41 | |
| B1H2P7 | 224 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.612 | 0.776 | 0.434 | 2e-41 | |
| Q6NWX7 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.595 | 0.757 | 0.460 | 3e-41 | |
| Q4KLE6 | 223 | N-terminal Xaa-Pro-Lys N- | N/A | no | 0.609 | 0.775 | 0.423 | 8e-41 | |
| Q8R2U4 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.609 | 0.775 | 0.434 | 2e-39 | |
| Q9BV86 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.609 | 0.775 | 0.439 | 4e-39 | |
| Q2T9N3 | 223 | N-terminal Xaa-Pro-Lys N- | yes | no | 0.609 | 0.775 | 0.445 | 4e-39 |
| >sp|Q5PP70|NTM1_ARATH Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 318 bits (814), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 153/211 (72%), Positives = 176/211 (83%), Gaps = 6/211 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
PV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175
Query: 248 FVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
FVSFF RAK LKPGGFFV+KEN+A++G L
Sbjct: 176 FVSFFNRAKGYLKPGGFFVVKENLAKNGFVL 206
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 4 |
| >sp|A2XMJ1|NTM1_ORYSI Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. indica GN=OsI_13745 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (723), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/238 (57%), Positives = 170/238 (71%), Gaps = 30/238 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE---------------------------- 100
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEQEAGGGG 60
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
K+ +WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+GLKP GFFVLKENIAR+G L
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARNGFVL 236
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q10CT5|NTM1_ORYSJ Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0780900 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 135/238 (56%), Positives = 167/238 (70%), Gaps = 30/238 (12%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQ------------------------ 104
M+ G DS+G+EF +A EMW +IG +
Sbjct: 1 MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEEEAGGGG 60
Query: 105 ----WYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF AR +HLV
Sbjct: 61 KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L + D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
LQDFTP+ GRYDVIW+QWCIG L DDDF+SFF RAK+GLKP GFFVLKENIAR+G L
Sbjct: 179 LQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARNGFVL 236
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KL94|NT1AA_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-A OS=Xenopus laevis GN=ntmt1-a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 116/182 (63%), Gaps = 8/182 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ V+F +R ++GL+P G V+K+N+ + +
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNVTQDAS 175
Query: 277 FL 278
+
Sbjct: 176 IM 177
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|B1H2P7|NTM1A_XENTR N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Xenopus tropicalis GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 114/182 (62%), Gaps = 8/182 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ V F KR +GL+P G V+K+N+ + +
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNVTQDVS 175
Query: 277 FL 278
+
Sbjct: 176 IM 177
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q6NWX7|NTM1A_DANRE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Danio rerio GN=ntmt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 109/178 (61%), Gaps = 9/178 (5%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 277
LQDF P+ RYDVIW+QW IGHLTDD V F +R + GL+P G V+K+N+A G
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNVAYEGVI 175
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q4KLE6|NT1AB_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-B OS=Xenopus laevis GN=ntmt1-b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 9/182 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ VSF +R K+GL+P G ++K+N+ + G+
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNVTQDGS 174
Query: 277 FL 278
+
Sbjct: 175 IM 176
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q8R2U4|NTM1A_MOUSE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Mus musculus GN=Ntmt1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 9/182 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276
FC LQDF+PE G YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G
Sbjct: 115 FCCGLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGV 174
Query: 277 FL 278
L
Sbjct: 175 IL 176
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1 (By similarity). Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q9BV86|NTM1A_HUMAN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Homo sapiens GN=NTMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 9/182 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 4 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+
Sbjct: 63 S--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276
FC LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A+ G
Sbjct: 115 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV 174
Query: 277 FL 278
L
Sbjct: 175 IL 176
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
| >sp|Q2T9N3|NTM1A_BOVIN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Bos taurus GN=NTMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 110/182 (60%), Gaps = 9/182 (4%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + N
Sbjct: 4 EVIEDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGT 62
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NF
Sbjct: 63 SY--ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNF 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276
FC LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G
Sbjct: 115 FCCGLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGV 174
Query: 277 FL 278
L
Sbjct: 175 IL 176
|
Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 284 | ||||||
| 255586233 | 276 | Protein C9orf32, putative [Ricinus commu | 0.725 | 0.746 | 0.790 | 2e-94 | |
| 224115626 | 276 | predicted protein [Populus trichocarpa] | 0.725 | 0.746 | 0.752 | 2e-91 | |
| 356528088 | 336 | PREDICTED: alpha N-terminal protein meth | 0.841 | 0.711 | 0.663 | 8e-91 | |
| 356510746 | 278 | PREDICTED: alpha N-terminal protein meth | 0.725 | 0.741 | 0.735 | 4e-87 | |
| 449433531 | 275 | PREDICTED: alpha N-terminal protein meth | 0.725 | 0.749 | 0.723 | 6e-87 | |
| 297791381 | 335 | hypothetical protein ARALYDRAFT_494541 [ | 0.735 | 0.623 | 0.718 | 2e-86 | |
| 145358849 | 334 | methyltransferase [Arabidopsis thaliana] | 0.732 | 0.622 | 0.719 | 2e-85 | |
| 75321280 | 276 | RecName: Full=Alpha N-terminal protein m | 0.721 | 0.742 | 0.725 | 2e-84 | |
| 358348179 | 348 | Methyltransferase-like protein 11A [Medi | 0.725 | 0.591 | 0.695 | 2e-83 | |
| 242032801 | 304 | hypothetical protein SORBIDRAFT_01g00629 | 0.732 | 0.684 | 0.595 | 6e-76 |
| >gi|255586233|ref|XP_002533771.1| Protein C9orf32, putative [Ricinus communis] gi|223526308|gb|EEF28616.1| Protein C9orf32, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 166/210 (79%), Positives = 183/210 (87%), Gaps = 4/210 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
MEV+G DSDG+EFKNAEEMWREQ G DG KKTQWYR+G+SYW+GVEASVDGVLGG+G
Sbjct: 1 MEVTGTDSDGREFKNAEEMWREQTG-DGT---KKTQWYRDGVSYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
VN+ DIKGSEAFLQ L S+ F + +HLVALDCGSGIGR+TKNLLIRYFNEVDLLEP
Sbjct: 57 QVNDADIKGSEAFLQTLFSELFVDGGLGRHLVALDCGSGIGRVTKNLLIRYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFLDAAR+SL ENHMA D HKATNFFC PLQ+FTP+ G YDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARDSLINENHMASDTHKATNFFCTPLQEFTPDAGHYDVIWVQWCIGHLTDDDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
VSFF RAK+GLKPGGFFVLKEN+AR+G L
Sbjct: 177 VSFFMRAKIGLKPGGFFVLKENVARNGFVL 206
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115626|ref|XP_002317082.1| predicted protein [Populus trichocarpa] gi|222860147|gb|EEE97694.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 158/210 (75%), Positives = 182/210 (86%), Gaps = 4/210 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME +G DSDG+EFKN +EMW E G+ KKTQWYR+G++YWEGVEASV+GVLGG+G
Sbjct: 1 MEAAGTDSDGREFKNPDEMWLEHTGD----TNKKTQWYRDGVAYWEGVEASVNGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ D+KGSE FLQ LL++ F + ++HLVALDCGSGIGRITKNLLIR+FNEVDLLEP
Sbjct: 57 HVNDADVKGSEGFLQTLLAELFVDGGIDRHLVALDCGSGIGRITKNLLIRFFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFLDAARE+L ENHMA D HKATNF+CVPLQ+FTP+ GRYDVIWVQWCIGHLTDDDF
Sbjct: 117 VSHFLDAARENLVQENHMALDKHKATNFYCVPLQEFTPDAGRYDVIWVQWCIGHLTDDDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
VSFF RAK+GLKPGGFFVLKEN+ARSG L
Sbjct: 177 VSFFNRAKIGLKPGGFFVLKENLARSGFVL 206
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528088|ref|XP_003532637.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 339 bits (869), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 162/244 (66%), Positives = 191/244 (78%), Gaps = 5/244 (2%)
Query: 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED 95
P+ LL R L ++ + + P ++++S M+ +GLDSDG+EFK E+MWREQ G+
Sbjct: 27 PSFSLLSTRTRTLGLTASCYSSFSFPSYRKTSCMDAAGLDSDGREFKTPEDMWREQAGD- 85
Query: 96 GEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNA-R 154
KKTQWYR+G+SYWEGV+A++DGVLGGF NVNE DI SE FL +L S+RF A
Sbjct: 86 ---PSKKTQWYRDGVSYWEGVKANMDGVLGGFANVNEPDITCSEDFLNILFSERFHAADA 142
Query: 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
+Q LV LDCGSGIGR+TKNLLIRYFNEVDLLEPVSHFL+ ARE+LA DMHKA
Sbjct: 143 RHQPLVVLDCGSGIGRVTKNLLIRYFNEVDLLEPVSHFLETARETLALGCQTNSDMHKAV 202
Query: 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+DFVSFFKRAKVGLKPGGFFVLKENIARS
Sbjct: 203 NFYCVPLQDFTPDTARYDVIWIQWCIGHLTDEDFVSFFKRAKVGLKPGGFFVLKENIARS 262
Query: 275 GTFL 278
G L
Sbjct: 263 GFVL 266
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510746|ref|XP_003524095.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 327 bits (837), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 156/212 (73%), Positives = 175/212 (82%), Gaps = 6/212 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ GLDSDG+EF AE+MWREQ G+ KKTQWYR+G+SYWEGV+A++DGVLGGF
Sbjct: 1 MDAGGLDSDGREFNTAEDMWREQAGD----PSKKTQWYRDGVSYWEGVKANMDGVLGGFA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARN--NQHLVALDCGSGIGRITKNLLIRYFNEVDLL 186
NVNE DI SE FL +LLS+RFP A + Q LVALDCGSGIGR+TKNLLIRYFNEVDLL
Sbjct: 57 NVNEPDISCSEDFLNILLSERFPPAADARRQPLVALDCGSGIGRVTKNLLIRYFNEVDLL 116
Query: 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDD 246
EPVSHFL+ ARE+LA DMHKA NF+CVPLQDFTP+T RYDVIW+QWCIGHLTD+
Sbjct: 117 EPVSHFLETARETLASGCQTNSDMHKAVNFYCVPLQDFTPDTARYDVIWIQWCIGHLTDE 176
Query: 247 DFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
DFVSFFK AKVGLK GGFFVLKENIARSG L
Sbjct: 177 DFVSFFKSAKVGLKAGGFFVLKENIARSGFVL 208
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433531|ref|XP_004134551.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] gi|449506765|ref|XP_004162842.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 326 bits (836), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 152/210 (72%), Positives = 179/210 (85%), Gaps = 4/210 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
ME SG D+DG EFKNAEEMWRE +G K+T+WYREG+ YW+GVEASVDGVLGG+G
Sbjct: 1 MEGSGADTDGHEFKNAEEMWREHVG----NPTKRTEWYREGVGYWQGVEASVDGVLGGYG 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VN+ DI GSE FL+ +L +RF A ++ LVALDCGSGIGR+TKNLLI+YFNEVDLLEP
Sbjct: 57 HVNDADILGSEVFLKSILVERFSFAGKDRPLVALDCGSGIGRVTKNLLIKYFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFL+AAR +LAPEN+ D+HKATNFFC+PLQ+FTP+ GRYDVIWVQWCIGHLTD+DF
Sbjct: 117 VSHFLEAARGNLAPENNGPSDLHKATNFFCMPLQEFTPDAGRYDVIWVQWCIGHLTDEDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
+SFFKRAK+GLK GG F+LKENIARSG L
Sbjct: 177 ISFFKRAKLGLKAGGIFILKENIARSGFVL 206
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791381|ref|XP_002863575.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] gi|297309410|gb|EFH39834.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 153/213 (71%), Positives = 178/213 (83%), Gaps = 4/213 (1%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S +ME+ G+DS+GKEF + +EMWRE+IGE+G++ +KTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 57 SESMEICGVDSEGKEFNSVQEMWREEIGEEGDET-RKTQWYRDGVSYWEGVEASVDGVLG 115
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDL 185
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDL
Sbjct: 116 GYGHVNDADIIGSEVFLKTLLQERLVNVGPNQHLVALDCGSGIGRITKNLLIRYFNEVDL 175
Query: 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD 245
LEPV+ FLDAARE+LA HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD
Sbjct: 176 LEPVAQFLDAARENLAS---AGSKTHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTD 232
Query: 246 DDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
+DFVSFF AK LKPGGFFV+KEN+A+ G L
Sbjct: 233 NDFVSFFNCAKGCLKPGGFFVVKENLAKKGFVL 265
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358849|ref|NP_199258.3| methyltransferase [Arabidopsis thaliana] gi|332007727|gb|AED95110.1| methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 154/214 (71%), Positives = 179/214 (83%), Gaps = 6/214 (2%)
Query: 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
S++M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 56 SNSMDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLG 113
Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVD 184
G+G+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVD
Sbjct: 114 GYGHVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVD 173
Query: 185 LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT 244
LLEPV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLT
Sbjct: 174 LLEPVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLT 230
Query: 245 DDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
D+DFVSFF RAK LKPGGFFV+KEN+A++G L
Sbjct: 231 DNDFVSFFNRAKGYLKPGGFFVVKENLAKNGFVL 264
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75321280|sp|Q5PP70.1|NTM1_ARATH RecName: Full=Alpha N-terminal protein methyltransferase 1; AltName: Full=X-Pro-Lys N-terminal protein methyltransferase 1; Short=NTM1 gi|56121880|gb|AAV74221.1| At5g44450 [Arabidopsis thaliana] gi|57222192|gb|AAW39003.1| At5g44450 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 153/211 (72%), Positives = 176/211 (83%), Gaps = 6/211 (2%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M++ G+DS+GKEF + +EMWRE+IGE E KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1 MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58
Query: 129 NVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
+VN+ DI GSE FL+ LL +R N NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59 HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118
Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD 247
PV+ FLDAARE+LA + HKATNFFCVPLQ+FTP GRYDVIWVQWCIGHLTD+D
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFTPAAGRYDVIWVQWCIGHLTDND 175
Query: 248 FVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
FVSFF RAK LKPGGFFV+KEN+A++G L
Sbjct: 176 FVSFFNRAKGYLKPGGFFVVKENLAKNGFVL 206
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348179|ref|XP_003638126.1| Methyltransferase-like protein 11A [Medicago truncatula] gi|355504061|gb|AES85264.1| Methyltransferase-like protein 11A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 146/210 (69%), Positives = 173/210 (82%), Gaps = 4/210 (1%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
M+ G DS+G+E+K A+EMW+EQ G+ KKT WYR+G+SYWEGV A+VDGVLGG+
Sbjct: 1 MDAGGSDSNGREYKTADEMWKEQTGD----PNKKTLWYRQGVSYWEGVNATVDGVLGGYA 56
Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
+VNE DI S+ FL+++LS+RF Q LVALDCGSGIGR+TKNLLIR+FNEVDLLEP
Sbjct: 57 DVNEPDITCSDDFLKIILSERFNADAKTQPLVALDCGSGIGRVTKNLLIRHFNEVDLLEP 116
Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF 248
VSHFL+AARE+L + DMHKA NF+CVPLQDFTP+ GRYDVIW+QWCIGHLTDDDF
Sbjct: 117 VSHFLEAARETLTSGEYTNSDMHKAVNFYCVPLQDFTPDVGRYDVIWIQWCIGHLTDDDF 176
Query: 249 VSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
++FFKRAKVGLKPGG FVLKENIARSG L
Sbjct: 177 ITFFKRAKVGLKPGGLFVLKENIARSGFVL 206
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242032801|ref|XP_002463795.1| hypothetical protein SORBIDRAFT_01g006290 [Sorghum bicolor] gi|241917649|gb|EER90793.1| hypothetical protein SORBIDRAFT_01g006290 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 290 bits (741), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 140/235 (59%), Positives = 170/235 (72%), Gaps = 27/235 (11%)
Query: 69 MEVSGLDSDGKEFKNAEEMWREQIG-------------------------EDGEQQEKKT 103
M+ G DS G+ F +A EMW E++G E+G K+
Sbjct: 1 MDSRGFDSAGRVFSSATEMWAEELGSSATASTTAEAASPATATEGSGGASEEGAGDGKRK 60
Query: 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALD 163
+WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL+DRF A+ +HLVALD
Sbjct: 61 EWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLADRFGTAK--RHLVALD 118
Query: 164 CGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223
CGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AARESL D HKA NF+CVPLQD
Sbjct: 119 CGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAARESLTGYMDQGEDSHKAANFYCVPLQD 178
Query: 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
FTPE G+YDVIW+QWCIG L DDDF+SFF RAKVGLKP GFFVLKENIAR+G L
Sbjct: 179 FTPEEGKYDVIWIQWCIGQLPDDDFISFFNRAKVGLKPDGFFVLKENIARNGFVL 233
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 284 | ||||||
| UNIPROTKB|B1H2P7 | 224 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.595 | 0.754 | 0.446 | 8.7e-40 | |
| UNIPROTKB|Q4KL94 | 224 | ntmt1-a "N-terminal Xaa-Pro-Ly | 0.612 | 0.776 | 0.434 | 8.7e-40 | |
| ZFIN|ZDB-GENE-040426-2055 | 223 | ntmt1 "N-terminal Xaa-Pro-Lys | 0.588 | 0.748 | 0.465 | 3.7e-39 | |
| UNIPROTKB|Q4KLE6 | 223 | ntmt1-b "N-terminal Xaa-Pro-Ly | 0.609 | 0.775 | 0.423 | 4.8e-39 | |
| UNIPROTKB|F1MKD1 | 223 | METTL11A "Uncharacterized prot | 0.598 | 0.762 | 0.452 | 2.6e-38 | |
| DICTYBASE|DDB_G0269658 | 270 | DDB_G0269658 "Methyltransferas | 0.672 | 0.707 | 0.406 | 8.9e-38 | |
| MGI|MGI:1913867 | 223 | Ntmt1 "N-terminal Xaa-Pro-Lys | 0.598 | 0.762 | 0.435 | 8.9e-38 | |
| UNIPROTKB|D2H163 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.598 | 0.762 | 0.446 | 1.1e-37 | |
| UNIPROTKB|Q9BV86 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.598 | 0.762 | 0.441 | 1.5e-37 | |
| UNIPROTKB|Q2T9N3 | 223 | NTMT1 "N-terminal Xaa-Pro-Lys | 0.598 | 0.762 | 0.446 | 1.9e-37 |
| UNIPROTKB|B1H2P7 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 79/177 (44%), Positives = 112/177 (63%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E + Q+Y + YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ L N N
Sbjct: 4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F +VD+++ FL A+ L E + N+
Sbjct: 64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
FC LQ+F+PE RYDVIW+QW IGHLTD+ V F KR +GL+P G V+K+N+ +
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVDFLKRCSLGLRPNGIIVIKDNVTQ 172
|
|
| UNIPROTKB|Q4KL94 ntmt1-a "N-terminal Xaa-Pro-Lys N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 79/182 (43%), Positives = 116/182 (63%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V +VDG+LGG+G+++ VD+ GS+ FLQ L N N
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + N+
Sbjct: 64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ V+F +R ++GL+P G V+K+N+ + +
Sbjct: 116 FCCGLQEFSPEPNRYDVIWIQWVIGHLTDEHLVNFLQRCRLGLRPNGIIVIKDNVTQDAS 175
Query: 277 FL 278
+
Sbjct: 176 IM 177
|
|
| ZFIN|ZDB-GENE-040426-2055 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 82/176 (46%), Positives = 109/176 (61%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E +T +Y E YW+ V +VDG+LGG+G+++ +DI GS+ FLQ L +
Sbjct: 7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VDL++ FLD AR L E+ + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275
LQDF P+ RYDVIW+QW IGHLTDD V F +R + GL+P G V+K+N+A G
Sbjct: 118 GLQDFQPQPERYDVIWIQWVIGHLTDDHLVEFLRRCRSGLRPEGLIVVKDNVAYEG 173
|
|
| UNIPROTKB|Q4KLE6 ntmt1-b "N-terminal Xaa-Pro-Lys N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 77/182 (42%), Positives = 117/182 (64%)
Query: 97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
E E +TQ+Y + +YW+ V A+VDG+LGG+G+++ D+ S+ FLQ L + ++
Sbjct: 4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60
Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
+ ALDCG+GIGRITK LL+ F VD+++ FL+ A+ L E + +
Sbjct: 61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114
Query: 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276
FC LQ+F+PE RYDVIW+QW IGHLTD+ VSF +R K+GL+P G ++K+N+ + G+
Sbjct: 115 FCCGLQEFSPEPSRYDVIWIQWVIGHLTDEHLVSFLQRCKLGLRPNGIILIKDNVTQDGS 174
Query: 277 FL 278
+
Sbjct: 175 IM 176
|
|
| UNIPROTKB|F1MKD1 METTL11A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 81/179 (45%), Positives = 110/179 (61%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + PN +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G L
Sbjct: 118 GLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVIL 176
|
|
| DICTYBASE|DDB_G0269658 DDB_G0269658 "Methyltransferase-like protein 11A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 83/204 (40%), Positives = 123/204 (60%)
Query: 72 SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
SGLD +G + N E++W++++ G+D + ++K WY+ YW+GVEA+VDG+LGG V
Sbjct: 24 SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPV 189
+ +D+ S+ F+Q + N +L ALDCG+GIGR+ K L+ F VDL+E
Sbjct: 81 SPIDVVASKVFIQDFIKGTDSRPPINLNL-ALDCGAGIGRVAKEFLLPIGFKNVDLVEQN 139
Query: 190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFV 249
FLD A+ +N D ++ N++ V LQDFT E +YD IW+QW IGHL D DF+
Sbjct: 140 KLFLDKAKS----DNFK--DDNRVENYYAVGLQDFTFEK-KYDCIWIQWVIGHLHDLDFI 192
Query: 250 SFFKRAKVGLKPGGFFVLKENIAR 273
F K+ L P G +K+N A+
Sbjct: 193 EFLKKCMDSLTPNGIICIKDNCAK 216
|
|
| MGI|MGI:1913867 Ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 78/179 (43%), Positives = 109/179 (60%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +D+ S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
LQDF+PE G YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G L
Sbjct: 118 GLQDFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVIL 176
|
|
| UNIPROTKB|D2H163 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Ailuropoda melanoleuca (taxid:9646)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 80/179 (44%), Positives = 108/179 (60%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYLKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL AR L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLIKARTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G L
Sbjct: 118 GLQDFSPEPNSYDVIWIQWVIGHLTDQHLAEFLRRCKQGLRPNGIIVIKDNMAQEGVIL 176
|
|
| UNIPROTKB|Q9BV86 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 79/179 (44%), Positives = 108/179 (60%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTS-- 63
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E + N+FC
Sbjct: 64 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A+ G L
Sbjct: 118 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL 176
|
|
| UNIPROTKB|Q2T9N3 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 80/179 (44%), Positives = 109/179 (60%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ V A+VDG+LGG+G+++ +DI S FLQ L + N +
Sbjct: 7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGTSY- 64
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F VD+++ FL A+ L E + NFFC
Sbjct: 65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
LQDF+PE YDVIW+QW IGHLTD F +R K GL+P G V+K+N+A+ G L
Sbjct: 118 GLQDFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVIL 176
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.1.1.8 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | eugene3.00111342 | hypothetical protein (276 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.V.3607.1 | phosphoserine transaminase (EC-2.6.1.52) (378 aa) | • | 0.411 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 284 | |||
| pfam05891 | 217 | pfam05891, Methyltransf_PK, AdoMet dependent proli | 7e-96 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 3e-07 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 3e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 6e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-05 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-05 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 3e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 3e-04 |
| >gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 7e-96
Identities = 102/178 (57%), Positives = 132/178 (74%), Gaps = 8/178 (4%)
Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
+ Q+Y + I+YWEGV A+VDG+LGG+G+V+++D+ GS FL+ LL +R P +HLV
Sbjct: 1 DEEQFYSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRLLRERLPGK--RRHLV 58
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
ALDCG+GIGR+TKNLL+ F++VDL+EPV FL A+E LA K NFFCV
Sbjct: 59 ALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGKK------KVGNFFCVG 112
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
LQDFTPE GRYD+IW+QWCIGHLTD+D V+F KR K GLKP GF V+KEN+A++G
Sbjct: 113 LQDFTPEEGRYDLIWIQWCIGHLTDEDLVAFLKRCKGGLKPNGFIVVKENVAQNGFVF 170
|
This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyzes the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified. As with other methyltransferases, this family carries the characteristic GxGxG motif. Length = 217 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 19/126 (15%)
Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
L LD G G G +T+ L++ F + + + D + LA
Sbjct: 23 LLALLKEKGIFIPASVLDIGCGTGYLTR-ALLKRFPQAEFI-----ANDISAGMLA---Q 73
Query: 206 MAPDMHKATNFFCVPLQDFTPETGRYDVIW----VQWCIGHLTDDDFVSFFKRAKVGLKP 261
+ + F C + E +D+I +QWC DD LKP
Sbjct: 74 AKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC------DDLSQALSELARVLKP 127
Query: 262 GGFFVL 267
GG
Sbjct: 128 GGLLAF 133
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-07
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + + L R V ++ L AR+ + + +P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAED-------LPF 53
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
D +DV+ + HL D + LKPGG V+
Sbjct: 54 PD-----ESFDVVVSSLVLHHL--PDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-06
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G + L V ++ L+ AR++ A
Sbjct: 3 LDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDA 56
Query: 222 QDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268
++ PE +DVI + HL +D F + A+ LKPGG VL
Sbjct: 57 EELPPEADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G G + + LL E ++ L+AA E LA + +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRL-----DV 55
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265
L + G +DV+ + HL D + + + LKPGG
Sbjct: 56 LDAIDLDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR+ + L + V ++ L+ A+E L + F
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP-------KVRFVVAD 53
Query: 221 LQDFTPETGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGG 263
+D E G +D++ + +L+ + + A L+PGG
Sbjct: 54 ARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--V 219
L+ G+GIGR T L + +V L+ + ES+ +N +K F C V
Sbjct: 42 LELGAGIGRFTGEL-AKKAGQVIALDFI--------ESVIKKNESINGHYKNVKFMCADV 92
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
D G D+I+ W + +L+D + + +R LK GG+ +E
Sbjct: 93 TSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142
|
Length = 475 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G G + L + V ++ L+ ARE+ P + F
Sbjct: 6 LDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLAL--GPRIT----FVQGD 59
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
D +D +++ G L + LKPGG VL
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLE-----LLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 284 | |||
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.96 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.91 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.89 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.85 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.85 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.83 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.83 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.82 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.8 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.79 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.79 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.79 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.78 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.78 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.78 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.78 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.78 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.77 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.76 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.76 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.76 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.75 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.75 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.74 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.74 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.73 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.72 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.71 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.71 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.71 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.71 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.71 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.71 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.7 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.7 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.69 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.69 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.69 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.69 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.69 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.68 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.68 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.68 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.68 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.67 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.67 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.67 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.66 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.66 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.66 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.66 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.65 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.64 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.64 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.63 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.62 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.61 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.61 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.6 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.59 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.58 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.58 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.58 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.58 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.57 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.56 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.56 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.55 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.55 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.55 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.54 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.54 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.54 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.54 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.54 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.53 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.52 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.51 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.51 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.5 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.5 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.5 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.5 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.49 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.46 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.46 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.45 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.45 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.44 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.44 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.44 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.43 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.43 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.43 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.43 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.43 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.41 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.41 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.41 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.41 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.4 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.39 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.39 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.38 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.38 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.37 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.37 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.36 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.36 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.36 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.35 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.35 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.34 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.34 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.34 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.33 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.33 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.32 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.31 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.3 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.29 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.29 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.29 | |
| PLN02476 | 278 | O-methyltransferase | 99.28 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.27 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.27 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.27 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.26 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.26 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.25 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.24 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.24 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.23 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.22 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.21 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.19 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.19 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.19 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.18 | |
| PLN02366 | 308 | spermidine synthase | 99.18 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.17 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.17 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.17 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.16 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.15 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.12 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.1 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.09 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.09 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.08 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.07 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.06 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.05 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.04 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.04 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.03 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.03 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.03 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.91 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.91 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.9 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.9 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.9 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.89 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.89 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.88 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.87 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.86 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.86 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.84 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.82 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.81 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.81 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.79 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.78 | |
| PLN02823 | 336 | spermine synthase | 98.77 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.76 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.72 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.72 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.69 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.69 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.67 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.66 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.66 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.65 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.63 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.62 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.59 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.59 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.58 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.58 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.57 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.56 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.55 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.51 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.51 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.49 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.48 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.48 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.47 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.47 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.42 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.36 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.34 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.34 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.33 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.27 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.26 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.25 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.24 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.24 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.21 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 98.2 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.19 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.18 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.16 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.13 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.12 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.12 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.1 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.09 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.06 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.06 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.05 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.03 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.03 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.94 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.89 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.88 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.87 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.85 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.82 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.79 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.75 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.74 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.71 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.7 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.69 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.68 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.67 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.66 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.59 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.51 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.49 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.47 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.39 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.29 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.23 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.2 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.16 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.16 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.11 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.96 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.96 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.95 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.94 | |
| PHA01634 | 156 | hypothetical protein | 96.93 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.83 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.81 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.69 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.64 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.56 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.44 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.36 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.34 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.28 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.25 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.25 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 96.23 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.14 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.06 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.83 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.83 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.64 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.52 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.48 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.38 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.35 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.31 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.31 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.3 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.23 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.17 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.15 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.12 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.04 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.79 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.78 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.66 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.59 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.51 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 94.49 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.48 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 94.1 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 93.94 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.86 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 93.86 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 93.86 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 93.63 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.49 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 93.47 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.44 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 93.34 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 93.27 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 93.12 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.05 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.95 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 92.52 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.42 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.33 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.31 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 92.21 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.2 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 91.88 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 91.84 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.53 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 91.36 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 90.3 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.18 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 90.03 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 89.78 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 89.74 | |
| PRK13699 | 227 | putative methylase; Provisional | 89.7 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 89.69 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 89.63 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 89.42 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 89.39 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 88.47 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 88.44 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 88.44 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 88.31 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 88.31 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 88.03 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 87.68 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 87.57 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 87.19 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 86.98 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 86.92 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 86.81 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 86.76 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 86.73 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 86.7 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 86.23 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 86.21 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 86.15 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 86.04 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 85.09 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 84.57 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 84.51 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 84.5 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 83.68 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 83.27 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 83.21 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 82.43 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 82.06 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 81.95 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 81.6 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 81.09 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 80.33 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 80.13 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 80.1 |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=209.31 Aligned_cols=173 Identities=53% Similarity=1.017 Sum_probs=138.6
Q ss_pred hhHHHHHHhhchhcccccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC
Q 023288 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (284)
Q Consensus 102 ~~~~~~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~ 181 (284)
.+.||+++.+||++++.+.+||+|||+.+++.|+.+++.||..+...... ......++||+|||.|+.|..++.+.+.
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 35799999999999999999999999999999999999999987654321 1345679999999999999999889999
Q ss_pred cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCC
Q 023288 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (284)
Q Consensus 182 ~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~Lkp 261 (284)
+|+.||+++.+++.|++.+.... ....++++..++++.+++++||+||+.|++.|++++++..+|++|...|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~~------~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKDN------PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCGG------CCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhcccC------CCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999998876521 245789999999998877899999999999999999999999999999999
Q ss_pred CcEEEEEeccCCCCc-ccCCCC
Q 023288 262 GGFFVLKENIARSGT-FLLSHS 282 (284)
Q Consensus 262 GG~lii~e~~~~~~~-~~d~~~ 282 (284)
+|.+++.||+..++. ++|++|
T Consensus 154 ~G~IvvKEN~~~~~~~~~D~~D 175 (218)
T PF05891_consen 154 NGVIVVKENVSSSGFDEFDEED 175 (218)
T ss_dssp EEEEEEEEEEESSSEEEEETTT
T ss_pred CcEEEEEecCCCCCCcccCCcc
Confidence 999999999999886 788776
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=178.93 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=113.0
Q ss_pred cCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCC
Q 023288 125 GGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE 203 (284)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~ 203 (284)
..|+.+++....+....+.+.+...+. ..++.+|||+|||||.++..+++.... +|+|+|+|+.||+.|+++....
T Consensus 22 ~~YD~~n~~~S~g~~~~Wr~~~i~~~~---~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~ 98 (238)
T COG2226 22 KKYDLMNDLMSFGLHRLWRRALISLLG---IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK 98 (238)
T ss_pred HHHHhhcccccCcchHHHHHHHHHhhC---CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc
Confidence 334444444444444455555554444 347899999999999999988876533 7999999999999999999875
Q ss_pred CCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 204 NHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 204 ~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
+. .+++|+.+|++++|+++++||+|.+++.|++++ +...+|++++|+|||||.+++.|...+..
T Consensus 99 ~~------~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 99 GV------QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred Cc------cceEEEEechhhCCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 53 348999999999999999999999999999999 66799999999999999999999766543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=179.83 Aligned_cols=148 Identities=19% Similarity=0.212 Sum_probs=89.3
Q ss_pred cccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHH
Q 023288 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLD 194 (284)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~ 194 (284)
...|+.+...|+.+++....+....+.+.+...+. ..++.+|||+|||||.++..+++.... +|+|+|+|+.|++
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~---~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~ 86 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG---LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLE 86 (233)
T ss_dssp ---------------------------SHHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHH
T ss_pred HHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC---CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHH
Confidence 34444455555554443333333333333333322 567789999999999999988865432 7999999999999
Q ss_pred HHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 195 ~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
.|+++....+. .+++++++|++++|+++++||+|++++.+++++ +...++++++|+|||||++++.|...+.
T Consensus 87 ~a~~k~~~~~~------~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 87 VARKKLKREGL------QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp HHHHHHHHTT--------SEEEEE-BTTB--S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred HHHHHHHhhCC------CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 99999875432 479999999999999999999999999999999 6679999999999999999999976665
Q ss_pred C
Q 023288 275 G 275 (284)
Q Consensus 275 ~ 275 (284)
.
T Consensus 159 ~ 159 (233)
T PF01209_consen 159 N 159 (233)
T ss_dssp S
T ss_pred C
Confidence 4
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-21 Score=165.37 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=96.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++... .+|+|+|+|++|++.|+++...... ....+++++++|++++++++++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCCCCCCCEe
Confidence 45678999999999999998876532 2799999999999999887531100 012468999999999999889999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
+|++++++||++ +...+++++.|+|||||.+++.|...++.
T Consensus 148 ~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 148 AITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 999999999998 66799999999999999999999866543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=168.10 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=91.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. ..++++++++++++++++++||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHHhhhccCCCCEEE
Confidence 4567999999999999998886554 699999999999999988654221 2468899999998887778999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..+++|++ +...+++++.++|||||.+++...
T Consensus 204 ~~~vLeHv~--d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 204 SLEVIEHVA--NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EhhHHHhcC--CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999999999 556999999999999999999864
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-20 Score=135.79 Aligned_cols=95 Identities=27% Similarity=0.378 Sum_probs=82.6
Q ss_pred EEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhc
Q 023288 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241 (284)
Q Consensus 162 LDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~ 241 (284)
||+|||+|..+..+++....+|+++|+|+.+++.++++... .++.+...|++++++++++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCcccccccccccccccee
Confidence 89999999999988877455799999999999999999875 335599999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 242 HLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 242 ~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
|++ +...+++++.|+|||||+++|
T Consensus 72 ~~~--~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLE--DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred ecc--CHHHHHHHHHHHcCcCeEEeC
Confidence 996 777999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-20 Score=153.48 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=115.4
Q ss_pred CCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCC-------CcEEEEeCCHHHHHHHHHH
Q 023288 127 FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARES 199 (284)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-------~~v~gvD~S~~~l~~ar~~ 199 (284)
|+.+++....+..+.+.+.+...+. +.++.++||++||||.++..+++... .+|+++|+||+||+.++++
T Consensus 73 YD~mND~mSlGiHRlWKd~~v~~L~---p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLWKDMFVSKLG---PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHhhcchhHHHHHHhhhccC---CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 4445666666777777777777766 67789999999999999999987532 2799999999999999999
Q ss_pred cCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 200 LAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
....++. ....+.++++|++++|+++.+||..++.+.+.+++ ++.+.+++++|+|||||+|.+.|...
T Consensus 150 a~~~~l~---~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 150 AKKRPLK---ASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HhhcCCC---cCCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 8665542 12348899999999999999999999999999999 66699999999999999999988643
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=163.13 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=96.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..+++....+|+|+|+|+.|++.++++....+. ..++++.++|+.++++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCcccCCCCCCCccEEE
Confidence 56789999999999999988876555799999999999999998765443 3568999999999988889999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+..+++|++ +...+++++.++|||||.|++.+.+.
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999999998 66699999999999999999987653
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-19 Score=152.82 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=97.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++... ..++.+.+.|+.+.++++++||+|
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCcccCCCCCCCeEEE
Confidence 567889999999999999988765444799999999999999998754 246889999998888888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++..+++|++.++...++++++++|||||.|+++|.+..
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 999999999877888999999999999999999987554
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-19 Score=146.49 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=91.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|..+..+++++. +|+|+|+|+.|++.++++....++ .++++.+.|+.+++++ ++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~~~~-~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNNLTFD-GEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhhCCcC-CCcCEEE
Confidence 3567999999999999999987765 599999999999999988766443 3478888998887664 5799999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++.++||+++++...+++++.++|||||.+++.+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999988889999999999999999976654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-19 Score=133.64 Aligned_cols=107 Identities=24% Similarity=0.222 Sum_probs=86.7
Q ss_pred CCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC-CCCCCCCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~I 234 (284)
|+.+|||||||+|.++..+++. ...+|+|+|+|+.|++.|++++...+. ..++++++.|+ ...... +.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~-~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDAEFDPDFL-EPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCCHGGTTTS-SCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECccccCcccC-CCCCEE
Confidence 4679999999999999999982 334799999999999999999832222 47899999999 333333 579999
Q ss_pred Eecc-hhccCC-hhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQW-CIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~-~l~~~~-~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++.+ +++++. .++...+++++.+.|+|||+|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999 666444 3567899999999999999999975
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=149.16 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=95.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++... .+|+|+|+|+.|++.++++....+. .+++++++|+.++++++++||
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAMELPFDDNSFD 116 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhcCCCCCCCcc
Confidence 45678999999999999998886632 2799999999999999998765432 468899999988887778999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+|++..++++++ +...+++++.++|+|||.+++.|...+
T Consensus 117 ~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 117 YVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 999999999998 666999999999999999999886543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-19 Score=149.98 Aligned_cols=105 Identities=21% Similarity=0.324 Sum_probs=92.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||.|.++..+++.+.. |+|+|+|+.+|+.|+.+....++ ++++.+...+++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~-VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALESGV-------NIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCe-eEEecCChHHHHHHHHhhhhccc-------cccchhhhHHHHHhcCCCccEEEE
Confidence 6789999999999999999988865 99999999999999999887643 477888888777655579999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
..+++|+++++ .+++.|.+++||||.++++...
T Consensus 131 mEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 MEVLEHVPDPE--SFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred hhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccc
Confidence 99999999554 8999999999999999998653
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=149.31 Aligned_cols=112 Identities=14% Similarity=0.249 Sum_probs=94.7
Q ss_pred CCCceEEEeeccccHHHHHHHHh--CC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~--~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
.++.+|||+|||+|..+..+++. .. .+++|+|+|+.|++.|++++...+. ..+++++++|+.+++++ .+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhhCCCC--CCC
Confidence 36679999999999999888763 22 2799999999999999999875433 34689999999887754 599
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+|+++.++||+++++...++++++++|||||.|+++|.+...
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~ 169 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 169 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 999999999999777889999999999999999999976543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-19 Score=148.18 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=90.0
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+.+|||+|||+|.++..|++.+. +|+|+|+|+.|++.|+++.......+.....++++.+.+++.+. +.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 57899999999999999996665 59999999999999999965544333333335777888887764 459999999
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
.+++|+. ++..+++.+.++|||||.++++...
T Consensus 166 evleHV~--dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEHVK--DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHHh--CHHHHHHHHHHHhCCCCceEeeehh
Confidence 9999998 6779999999999999999998653
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=150.77 Aligned_cols=113 Identities=23% Similarity=0.287 Sum_probs=90.2
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+++.+|||||||+|.++..+++++..+|+|+.+|+++.+.+++++...|+ ..++++...|..+++ .+||.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v~v~~~D~~~~~---~~fD~ 130 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRVEVRLQDYRDLP---GKFDR 130 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTEEEEES-GGG------S-SE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEeeccccC---CCCCE
Confidence 3789999999999999999999988555799999999999999999988776 456889999988765 38999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|++..+++|+..+++..+++++.++|||||.+++...+..+
T Consensus 131 IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 131 IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 99999999999889999999999999999999987655443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=147.56 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=100.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++.++++.+..+|+|+++|+++.+.+++++...|+ ..++++...|..++. +.||-|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~rd~~---e~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDYRDFE---EPFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEeccccccc---ccccee
Confidence 789999999999999999999988766899999999999999999888776 457889999988865 459999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
++..+++|+..+....+|+++.++|+|||.+++......+
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999999999888999999999999999999998765444
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=137.65 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=91.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
+++.+|||+|||+|.++..++... ..+++|+|+|+.|++.|++++...++ .+++|.+.|+.+++ ++ +.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~~~-~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQELE-EKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGCSS-TTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccccC-CCe
Confidence 357899999999999999988542 23799999999999999998765443 47999999999976 44 799
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|++..+++|++ +...+++++.++|+|||.+++.+..
T Consensus 75 D~I~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999 5569999999999999999998764
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-18 Score=140.95 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=88.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++.++. +|+|+|+|+.|++.++++....++ ++.+...|+...+++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccchhcccc-CCCCEEEE
Confidence 467999999999999999987766 599999999999999988765432 256777777665554 58999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+.++||++.++...+++++.++|||||++++.+.
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999877888999999999999999776653
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-18 Score=145.00 Aligned_cols=112 Identities=14% Similarity=0.265 Sum_probs=94.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~---~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
.++.+|||+|||+|..+..+++.. ..+++|+|+|+.|++.|++++...+. ..+++++++|+.+++++ .+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEIK--NAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCCCC--CCC
Confidence 366799999999999999888753 22799999999999999998765322 24688999999988765 589
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+|+++.++||+++++...+++++.++|||||.|+++|.+..+
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~ 166 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 166 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC
Confidence 999999999999888889999999999999999999976543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=130.08 Aligned_cols=96 Identities=24% Similarity=0.469 Sum_probs=81.6
Q ss_pred EEEeeccccHHHHHHHHhC---C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 161 ALDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~---~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
|||+|||+|..+..++... . .+++|+|+|+.|++.++++.... ..++++++.|+.+++..+++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-------~~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-------GPKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-------TTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-------CCceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999998764 2 48999999999999999998643 23689999999998877789999999
Q ss_pred cc-hhccCChhhHHHHHHHHHhcCCCCc
Q 023288 237 QW-CIGHLTDDDFVSFFKRAKVGLKPGG 263 (284)
Q Consensus 237 ~~-~l~~~~~~~~~~~l~~~~r~LkpGG 263 (284)
.. +++|++++++..+++++.++|||||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 54 5999999999999999999999998
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-18 Score=145.92 Aligned_cols=99 Identities=9% Similarity=0.052 Sum_probs=82.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||||.++..+++....+|+|+|+|++|++.|+++. .++++|++++|+++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEEe
Confidence 46799999999999999888764347999999999999998642 2467899999998999999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++++||++ +...++++++|+|||. +.+.|...+
T Consensus 117 ~~~l~~~~--d~~~~l~e~~RvLkp~--~~ile~~~p 149 (226)
T PRK05785 117 SFALHASD--NIEKVIAEFTRVSRKQ--VGFIAMGKP 149 (226)
T ss_pred cChhhccC--CHHHHHHHHHHHhcCc--eEEEEeCCC
Confidence 99999998 6679999999999994 334454333
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=143.34 Aligned_cols=102 Identities=18% Similarity=0.348 Sum_probs=88.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..+...+ .+|+++|+|+.|++.++++... ..++++|++++++++++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAA-----------DHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcccCcCCCCcEEEEE
Confidence 356789999999999999887655 4699999999999999987532 4578899999888888999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++.++++++ +...++.++.++|||||.++++...
T Consensus 109 s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 109 SNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999988 6679999999999999999998643
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=145.53 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=85.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||||||+|.++..++...+. +|+|+|+|+.|++.|+++ ++++.++|+.+++ ++++||+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCC-CCCCceE
Confidence 456789999999999999988877532 799999999999999763 2678889998774 4579999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+++.++||++ +...++++++++|||||.+++..
T Consensus 93 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 93 VVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999998 56699999999999999999863
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=145.29 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=90.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~I 234 (284)
.++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|+++....++ ..+++++++|+.++. ..+++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHHHhhhcCCCCCEE
Confidence 3567999999999999999987754 699999999999999999876543 356889999987764 445799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++..+++|++ +...+++++.++|||||.+++..
T Consensus 117 ~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 117 LFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred EehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEE
Confidence 9999999998 45599999999999999998864
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=134.73 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=88.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||+|||+|..+..+.... ..+++|+|+|+.|++.|+++.. ++.+.++|+.+ ++++++||+|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~-~~~~~sfD~V 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD-PFKDNFFDLV 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC-CCCCCCEEEE
Confidence 356789999999999999887652 3479999999999999998753 25677888877 6777899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+++.+++|++++++..+++++.+++ ++.+++.|...+.
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 9999999998888999999999998 5788888875443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-17 Score=144.79 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=89.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..++..++..|+|+|+|+.|+..++......+. ..++.+..+++++++. +++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 45689999999999999999888777899999999999865543221110 2468899999999887 67999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|..+++|.. +...+++++++.|+|||.+++...
T Consensus 195 s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 195 SMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999999988 666999999999999999998654
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-17 Score=143.55 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|..+..++..+. +|+|+|+|+.|++.++++....+ .++++.+.|+....+ +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~-------l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKEN-------LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEechhcccc-cCCccEEEE
Confidence 345999999999999999987765 59999999999999998876543 257788888877655 478999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.++||++.++...+++++.++|+|||++++.+
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999988889999999999999999977754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=150.21 Aligned_cols=110 Identities=21% Similarity=0.203 Sum_probs=94.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... ..+++|.++|+...++++++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcccCCCCCCCEEEE
Confidence 3567899999999999999888765447999999999999999876532 246889999999888777899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++..+++|++ +...++++++++|||||.+++.+.+..
T Consensus 337 ~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 337 YSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred EECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9999999998 566999999999999999999986543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=133.93 Aligned_cols=126 Identities=12% Similarity=-0.026 Sum_probs=95.0
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC------CCCCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMH 211 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~------~~~~~ 211 (284)
+..++..++.... ..++.+|||+|||.|+.+..|+++++. |+|+|+|+.+++.+.+........ .....
T Consensus 19 p~~~l~~~~~~l~----~~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T TIGR03840 19 VNPLLVKHWPALG----LPAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRA 93 (213)
T ss_pred CCHHHHHHHHhhC----CCCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeec
Confidence 3445555544321 235679999999999999999988886 999999999999875432211000 00113
Q ss_pred cceeEEEcCCCCCCCC-CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 212 KATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 212 ~~~~~~~~d~~~~~~~-~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+++++++|+.+++.. .+.||.|+...+++|++.+....+++.+.++|||||++++.
T Consensus 94 ~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 94 GNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 4689999999887643 35799999999999999888999999999999999976654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=138.72 Aligned_cols=100 Identities=23% Similarity=0.394 Sum_probs=86.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|+++.. ++.+..+|+.++.. +++||+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~~~~-~~~fD~ 96 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIASWQP-PQALDL 96 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhccCC-CCCccE
Confidence 45678999999999999998887653 379999999999999998753 36788899887653 359999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+++.++||++ +...+++++.++|||||.+++.
T Consensus 97 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999998 5669999999999999999985
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=140.41 Aligned_cols=110 Identities=24% Similarity=0.179 Sum_probs=93.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|..+..++..... +|+++|+|+.|++.|+++....+. .++++..+|+.++++++++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 457789999999999988766654332 699999999999999998765442 367899999998888778999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+|+++.+++|.+ +...+++++.++|||||+|++++...
T Consensus 149 ~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 149 VIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred EEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 999999999988 56689999999999999999988654
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-17 Score=133.52 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=88.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.++||+|||.|+.+.+|+++|+. |+++|.|+..++.+++.+...+ ..++..+.|+.+..++ +.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~-------l~i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEG-------LDIRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcC-------ceeEEEEecchhcccc-CCcCEEE
Confidence 35789999999999999999999996 9999999999999988776543 3488899999988776 6899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..+++|++.+.+..+++++...++|||++++...
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 99999999999999999999999999999888543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=141.04 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=87.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++..+...|+|+|+|+.|+..++......+. ..++.+...++++++.. .+||+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~-----~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN-----DKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-----CCCeEEEECCHHHCCCC-CCcCEE
Confidence 446789999999999999988877776899999999999865432111000 23577888888888754 489999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|..+++|.+ +...++++++++|||||.|++.+.+
T Consensus 193 ~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 193 FSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred EEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 9999999998 6669999999999999999997543
|
Known examples to date are restricted to the proteobacteria. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=150.26 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=92.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (284)
++.+|||+|||+|..+..++..... +|+|+|+|+.|++.|+++.... ..+++++++|+.+++ +++++||+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------CCCeEEEEcchHhCccccCCCCEEE
Confidence 5689999999999999888765543 8999999999999999886542 235778889988876 67789999
Q ss_pred EEecchhccC-----------ChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 234 IWVQWCIGHL-----------TDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 234 Iv~~~~l~~~-----------~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
|+++.++|++ +.++...+++++.++|||||.+++.|.+.+
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9999999875 235678999999999999999999987544
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=135.08 Aligned_cols=104 Identities=22% Similarity=0.242 Sum_probs=90.2
Q ss_pred eEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
+|||||||+|..+..+++.+. .+|+|+|+|+.+++.+++++...++ ..++++...|+...+.+ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccCCCC-CCCCEeehHH
Confidence 699999999999998887763 3799999999999999999876554 45688999998766554 5899999999
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+++|++ +...+++++.++|||||.+++.+..
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 999998 5679999999999999999999864
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=133.80 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=89.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.+|||+|||+|.++..++..+.. +++++|+|+.+++.++++.. .++.++.+|+.+.++++++||+|+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~vi 103 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLIV 103 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEEE
Confidence 4578999999999999988877654 68999999999999998764 247789999999887778999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++.++||+. +...++.++.++|+|||.+++.+.
T Consensus 104 ~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 104 SNLALQWCD--DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred Ehhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999998 566999999999999999999864
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-16 Score=139.02 Aligned_cols=105 Identities=23% Similarity=0.175 Sum_probs=90.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||||||+|.++..+++... .+|+++|+|+.|++.|+++... .+++++.+|+.++++++++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeEE
Confidence 3567999999999999998876542 3799999999999999987542 35778999999988888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+++.+++|++ +...+++++.++|||||.+++.+.+
T Consensus 183 Is~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 183 VSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred EEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999998 4458999999999999999987654
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-18 Score=126.59 Aligned_cols=95 Identities=27% Similarity=0.433 Sum_probs=61.6
Q ss_pred EEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc---CCCCCCCCCCceeEEEec
Q 023288 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---PLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 162 LDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~fD~Iv~~ 237 (284)
||||||+|.++..+++.... +++++|+|+.|++.+++++..... .+...... +...... .++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDP-PESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC-----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhccc-ccccceehhh
Confidence 79999999999999987433 799999999999888887765321 22223333 3322222 2599999999
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEE
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~l 265 (284)
.++||++ ++..+++++.++|||||.|
T Consensus 74 ~vl~~l~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLE--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence 9999995 7779999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=138.21 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=88.4
Q ss_pred CCCceEEEeeccccH----HHHHHHHhCC------CcEEEEeCCHHHHHHHHHHcCCC----CCC---------------
Q 023288 156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPE----NHM--------------- 206 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~----~s~~l~~~~~------~~v~gvD~S~~~l~~ar~~~~~~----~~~--------------- 206 (284)
.++.+|+|+|||||. ++..+++.+. .+|+|+|+|+.||+.|++..-.. ++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 4444444322 27999999999999999864210 000
Q ss_pred --CCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 207 --APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 207 --~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
......+++|.+.|+.+.+++.++||+|+|.++++|+++++...++++++++|+|||+|++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 00112468999999999877678999999999999999888889999999999999999996
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=146.98 Aligned_cols=110 Identities=23% Similarity=0.405 Sum_probs=93.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC--CCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~ 233 (284)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++.... ..++++++.|+.. +++++++||+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~~~fD~ 106 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVTSPDLNISDGSVDL 106 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEecccccccCCCCCCEEE
Confidence 356799999999999999888664 5799999999999988765332 3568899999863 5566789999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|+++++++|++++++..+++++.++|||||.+++.|++...
T Consensus 107 I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~ 147 (475)
T PLN02336 107 IFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQ 147 (475)
T ss_pred EehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Confidence 99999999999887899999999999999999999987543
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=128.16 Aligned_cols=104 Identities=27% Similarity=0.399 Sum_probs=84.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
..-.++||+|||.|.++..|+.+ +.+++++|+|+..++.|+++... ..++++.+.++.++. ++++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~-P~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFW-PEGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT----SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCC-CCCCeeEEE
Confidence 45578999999999999988744 56899999999999999999987 467999999998865 457999999
Q ss_pred ecchhccCCh-hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++.+++|+.+ +++..++.++...|+|||.+++..
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999985 679999999999999999999974
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=127.73 Aligned_cols=98 Identities=28% Similarity=0.378 Sum_probs=79.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..+...++ +++|+|+|+.+++. .. ......+......++++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----RN-----------VVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----TT-----------SEEEEEECHTHHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----hh-----------hhhhhhhhhhhhccccchhhHh
Confidence 5778999999999999998876666 79999999999998 11 2222332233334567999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
++.+++|++ +...+++++.++|||||.+++.+...
T Consensus 84 ~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 84 CNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999 67799999999999999999998754
|
... |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.5e-16 Score=133.06 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=95.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.++.+|||+|||+|.++..++..+. .+++++|+++.+++.+++++...+. ..++.+...|+.+.+.++++||+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~ 124 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccccCCCCCCCccE
Confidence 3568999999999999999987774 5899999999999999998765332 34688999999888776789999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
|++..+++++. +...+++++.++|+|||.+++.|...+
T Consensus 125 I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 125 VTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred EEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 99999999988 667999999999999999999886543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=129.08 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=92.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCccee-EEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~fD~ 233 (284)
.....|||+|||||..-.++-..-..+|+++|+++.|-+.+.+.+++.. ..++. |+.++.++++ .++++||.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------PLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------CcceEEEEeechhcCcccccCCeee
Confidence 3456789999999998774322222379999999999999999887642 34455 8899999998 78899999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
|++..+++-.. +..+.|+++.|+|||||++++.|++....
T Consensus 149 VV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y 188 (252)
T KOG4300|consen 149 VVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEY 188 (252)
T ss_pred EEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 99999998877 66799999999999999999999976543
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=129.71 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=92.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..++.... .+++++|+|+.+++.++++.... ..++++...|+..+++++++||
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccccCCCCCCCce
Confidence 56778999999999999998887652 37999999999999999883321 3568899999988887778999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++..+++|++ +...+++++.++|||||.+++.+.
T Consensus 90 ~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 90 AVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 999999999998 566999999999999999999874
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=140.03 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=90.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++... ..+++...|..++ +++||.|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 567789999999999999988876545799999999999999998753 2367788887665 3689999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++|++..++..+++++.++|||||.+++.+..
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 9999999998778889999999999999999997643
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=129.01 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=93.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.++.+|||+|||+|..+..+++.+.. +++++|+++.+++.++++... ..++++..+|+.+.++++++||+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------PLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------CCCceEEecchhcCCCCCCcEEE
Confidence 36789999999999999999887764 799999999999999998752 34688999999988776779999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
|+++.++++++ +...+++++.+.|+|||.+++.+...
T Consensus 110 i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 110 VTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99999999988 66799999999999999999987644
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=131.34 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=84.2
Q ss_pred CCCceEEEeeccccHHHHHHHHh----CCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCc
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~----~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (284)
.++.+|||+|||+|.++..++.. ++. +|+|+|+|+.|++.|+++... .++.+.+.+...++.++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence 45679999999999998877642 322 799999999999999988643 2355666666666656689
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
||+|+++.++||+++++...+++++.++++ |.+++.+..
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 999999999999998778899999999998 566666543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-16 Score=128.82 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=90.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.....+|.|+|||+|..+..++++.+. .++|+|-|+.|++.|+++. .+.+|..+|+.++.++ .++|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~p~-~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWKPE-QPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcCCC-Cccch
Confidence 567789999999999999988888776 8999999999999998885 4588999999998765 58999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++++-+|++++ +-..+|.++...|.|||+|.+.
T Consensus 96 lfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 96 LFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEE
Confidence 99999999999 7779999999999999999996
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=125.25 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|+++....++ .+++++++|+.+++. .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCccEEE
Confidence 478999999999999998876443 3799999999999999998877553 348999999988776 67999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++.. . ++..+++.+.++|||||.+++.+..
T Consensus 118 ~~~~----~--~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 118 SRAV----A--SLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred Eccc----c--CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 8752 2 5668999999999999999998643
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=136.59 Aligned_cols=213 Identities=15% Similarity=0.164 Sum_probs=136.8
Q ss_pred CchhhhhhhhhHHHHhhhhcccccCCCCCCccccccccCCCCCCcccCHHHHHHHHhcCCccchhhh-----------hH
Q 023288 36 PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKK-----------TQ 104 (284)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~-----------~~ 104 (284)
.-.-++.|||-+..++.+.+.+... -+....+.+.|....| .+++.++.+..... ......+ ..
T Consensus 77 ~d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g--~~s~~k~~~~~~~~-~~~~~ar~~~l~~~~~~~~~ 151 (342)
T PRK09489 77 CDTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSG--VRSAEKMLADYAPL-NKIDSARRCGLYHGRLEKQP 151 (342)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEecccc--HHHHHHHHHHhcCc-cccccceeEEEEEEeccccC
Confidence 3445889999999999988876653 2235567788999999 67788777766421 1100000 00
Q ss_pred HHHHHhhchhcccccccccccCCCccccc-cccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-c
Q 023288 105 WYREGISYWEGVEASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-E 182 (284)
Q Consensus 105 ~~~~~~~yW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~ 182 (284)
.+ ...+||..... ..-.+....+++.. .+......+...+. .....+|||+|||+|.++..+++.+.. +
T Consensus 152 ~~-~~~~~~~~y~~-~~l~i~~~pgvFs~~~lD~gt~lLl~~l~-------~~~~g~VLDlGCG~G~ls~~la~~~p~~~ 222 (342)
T PRK09489 152 VF-DADKFWKEYQV-DGLTVKTLPGVFSRDGLDVGSQLLLSTLT-------PHTKGKVLDVGCGAGVLSAVLARHSPKIR 222 (342)
T ss_pred CC-cccccceeeec-CCEEEEeCCCCCCCCCCCHHHHHHHHhcc-------ccCCCeEEEeccCcCHHHHHHHHhCCCCE
Confidence 01 11344543211 00011112222221 12222233333332 223458999999999999988877653 7
Q ss_pred EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCC---hhhHHHHHHHHHhcC
Q 023288 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGL 259 (284)
Q Consensus 183 v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~---~~~~~~~l~~~~r~L 259 (284)
|+++|+|+.|++.+++++...++ ..+++..|+... .+++||+|+++..+|+.. ......+++++.+.|
T Consensus 223 v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~L 293 (342)
T PRK09489 223 LTLSDVSAAALESSRATLAANGL-------EGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHL 293 (342)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhc
Confidence 99999999999999998876543 245667776542 246899999999998642 234678999999999
Q ss_pred CCCcEEEEEecc
Q 023288 260 KPGGFFVLKENI 271 (284)
Q Consensus 260 kpGG~lii~e~~ 271 (284)
||||.++++-|.
T Consensus 294 kpgG~L~iVan~ 305 (342)
T PRK09489 294 NSGGELRIVANA 305 (342)
T ss_pred CcCCEEEEEEeC
Confidence 999999998763
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-15 Score=125.92 Aligned_cols=125 Identities=11% Similarity=-0.019 Sum_probs=93.8
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCC------CCCCCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH------MAPDMH 211 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~------~~~~~~ 211 (284)
...++...+... . ..++.+|||+|||.|..+..|+++++. |+|||+|+..++.+.+....... ......
T Consensus 22 p~~~L~~~~~~~-~---~~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~ 96 (218)
T PRK13255 22 VNPLLQKYWPAL-A---LPAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQA 96 (218)
T ss_pred CCHHHHHHHHhh-C---CCCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHHHcCCCcccccccccccccc
Confidence 344555544322 1 235679999999999999999988876 99999999999987543221100 001113
Q ss_pred cceeEEEcCCCCCCCC-CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 212 KATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 212 ~~~~~~~~d~~~~~~~-~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
.++++.++|+.++... .+.||.|+...+++|++.+....+++.+.++|+|||++++
T Consensus 97 ~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 97 GEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 5688999999988643 2589999999999999998999999999999999996444
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=132.48 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=94.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+..+|||||||+|.++..++++++. +++++|. +.+++.+++++...++ ..+++++.+|+.+.+++ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCccCCCCC--CCCE
Confidence 456689999999999999999988765 7999997 7999999998877654 35689999998765554 3799
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
|+++.++|+.+++....++++++++|+|||++++.|.+..
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9999999999877778899999999999999999997543
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=125.13 Aligned_cols=100 Identities=23% Similarity=0.243 Sum_probs=81.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|||+|||+|..+..++..... +|+++|+|+.|++.++++....++ .+++++++|+.++.. .++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~~~-~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDFQH-EEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhccc-cCCccEEE
Confidence 4679999999999999987755433 799999999999999988765442 358999999988643 46999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.. ++ ++..+++.+.++|+|||.+++..
T Consensus 115 s~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 876 43 34478899999999999999874
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-15 Score=129.03 Aligned_cols=163 Identities=29% Similarity=0.461 Sum_probs=128.5
Q ss_pred hhhHHHHHHhhchhcccccccc-cccCCCcccc---ccccccHHHHHHHHHhhcCC--ccCCCCceEEEeeccccHHHHH
Q 023288 101 KKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITKN 174 (284)
Q Consensus 101 ~~~~~~~~~~~yW~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~l~~--~~~~~~~~VLDiGcGtG~~s~~ 174 (284)
....+|+++..||.+...+.+| ++++|...+. .++.....++...+...+.+ .+...-...+|+|.|+|+.+..
T Consensus 115 ~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ 194 (342)
T KOG3178|consen 115 NTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKN 194 (342)
T ss_pred hhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHH
Confidence 3446789999999999999999 7888887655 67777777777777643321 1122346899999999999999
Q ss_pred HHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHH
Q 023288 175 LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR 254 (284)
Q Consensus 175 l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~ 254 (284)
++. .++++.++++....+..++..+. .| ++.+-+|+-.- .| +-|+||+.|++||++|+++.++|++
T Consensus 195 ll~-~fp~ik~infdlp~v~~~a~~~~-~g---------V~~v~gdmfq~-~P--~~daI~mkWiLhdwtDedcvkiLkn 260 (342)
T KOG3178|consen 195 LLS-KYPHIKGINFDLPFVLAAAPYLA-PG---------VEHVAGDMFQD-TP--KGDAIWMKWILHDWTDEDCVKILKN 260 (342)
T ss_pred HHH-hCCCCceeecCHHHHHhhhhhhc-CC---------cceeccccccc-CC--CcCeEEEEeecccCChHHHHHHHHH
Confidence 997 66679999999999988887764 22 55666666554 22 3469999999999999999999999
Q ss_pred HHhcCCCCcEEEEEeccCCCCcc
Q 023288 255 AKVGLKPGGFFVLKENIARSGTF 277 (284)
Q Consensus 255 ~~r~LkpGG~lii~e~~~~~~~~ 277 (284)
|...|+|||.+++.|++.+....
T Consensus 261 C~~sL~~~GkIiv~E~V~p~e~~ 283 (342)
T KOG3178|consen 261 CKKSLPPGGKIIVVENVTPEEDK 283 (342)
T ss_pred HHHhCCCCCEEEEEeccCCCCCC
Confidence 99999999999999997765433
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.7e-15 Score=112.69 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=81.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++... .+|+++|+|+.+++.+++++...+. .+++++..|+... +....+||
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEeccccccChhhcCCCC
Confidence 34567999999999999999987654 3799999999999999988765432 3577888887652 22235899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|++....+ ....+++++.+.|+|||.|++.
T Consensus 91 ~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 999977543 3458999999999999999885
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=126.25 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=85.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC-CCCC--CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~fD 232 (284)
++.+|||+|||+|..+..++..... +|+++|+|+.|++.|+++....+. .++.++++|+ ..++ +++++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccccc
Confidence 5678999999999999988876543 799999999999999998765432 4688999998 6655 5667999
Q ss_pred EEEecchhccCC------hhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~------~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++++...+.. ......+++++.++|||||.|++..
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 999876543221 1124579999999999999999974
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-15 Score=124.77 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=88.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++.... +|+|+|+|+.|++.|++++...+. ..++.+.+.|+.+++ ++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~~~---~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLSLC---GEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhhCC---CCcCEEE
Confidence 4578999999999999998886644 699999999999999998865332 236889999998765 6899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+..+++|++.+++..+++++.+++++++.+.+.
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 999999998778889999999999988777664
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=129.09 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=80.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++....+... ....+++|.+.|+.++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAAL-PPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhccccc-ccccceEEEEcchhhc---CCCcCEEEE
Confidence 467999999999999999987655 69999999999999999876431100 0023578888888654 378999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
..+++|++++....+++.+.++ .+||.++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHhh-cCCEEEE
Confidence 9999999877777788888764 5555544
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=122.48 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=84.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+. .|+|+|+|+.|++.|++++...+. ..++++..+|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCchh---ccCCcCEEE
Confidence 4567999999999999999987765 499999999999999998765432 2367888888543 347899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+..+++|++++++..+++++.+.+++++.+.+
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99999999988888999999998765555443
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=117.76 Aligned_cols=107 Identities=21% Similarity=0.147 Sum_probs=87.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++++...+ .++++..+|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN-------VGLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEccccccc--CCcccEEEE
Confidence 457899999999999998887766 79999999999999999876532 34778888886643 358999999
Q ss_pred cchhccCChh-------------------hHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 237 QWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 237 ~~~l~~~~~~-------------------~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+..+++.++. .+..+++++.++|||||.+++.+....
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 9888766531 146789999999999999999876544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=117.86 Aligned_cols=119 Identities=24% Similarity=0.266 Sum_probs=91.6
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
...++...+.. .+..+|||+|||+|.++..++..+.. +|+++|+|+.+++.+++++...+. .++++
T Consensus 19 ~t~lL~~~l~~-------~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~------~~v~~ 85 (170)
T PF05175_consen 19 GTRLLLDNLPK-------HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL------ENVEV 85 (170)
T ss_dssp HHHHHHHHHHH-------HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC------TTEEE
T ss_pred HHHHHHHHHhh-------ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc------ccccc
Confidence 34455555542 25678999999999999988877666 799999999999999999887654 22888
Q ss_pred EEcCCCCCCCCCCceeEEEecchhccCCh---hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 217 ~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~---~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..|+.+... +++||+|+++..++.-.+ .-...+++.+.+.|||||.+++.-+
T Consensus 86 ~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 86 VQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 9999876433 579999999988776653 2367899999999999999977644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=120.00 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=82.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|..+..+++... .+|+++|+++.+++.|++++...+. ..++++..+|+.+.....++||
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~~d~~~~~~~~~~fD 144 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEECCcccCCccCCCcc
Confidence 45678999999999999987776432 3799999999999999998876543 2357899999877554557999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++..++++++ .++.+.|+|||+|++.-
T Consensus 145 ~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 145 AIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 999999887766 35778999999998853
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=126.23 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=78.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~----~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
+..+|||+|||+|.++..++.... ..++|+|+|+.|++.|+++. .++.+.++|+.++++++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 457899999999999998876543 25899999999999998764 347789999999998889999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++... + ..++++.|+|||||.|++...
T Consensus 154 ~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 154 AIIRIYA----P-----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred EEEEecC----C-----CCHHHHHhhccCCCEEEEEeC
Confidence 9998654 1 346789999999999999753
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=115.03 Aligned_cols=105 Identities=18% Similarity=0.317 Sum_probs=86.7
Q ss_pred eEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
+|||+|||.|.+...|++.++. .++|+|+|++.++.|+..++..++ ...++|.+.|+.+-.+..+.||+|.--.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----SNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC-----CcceeEEEeeccCCcccccceeEEeecC
Confidence 9999999999999999999888 599999999999999998887765 2349999999998777778999998555
Q ss_pred hhccC------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 239 CIGHL------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 239 ~l~~~------~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++..+ +...+..++..+.+.|+|||+|+|+-
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 44333 11224568899999999999999963
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-14 Score=127.36 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=85.7
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
..+|||+|||+|.++..+++.++. +|+++|+|+.+++.|++++...+.. ...++++...|.... .++++||+|+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l~~-~~~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALSG-VEPFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEcccccc-CCCCCEEEEEE
Confidence 469999999999999998877654 8999999999999999988654321 013578888887543 23458999999
Q ss_pred cchhccC---ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 237 QWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~---~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..+|.. ++.....+++.+.++|+|||.|++.-|
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 9887643 333456899999999999999999854
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-14 Score=124.07 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=87.4
Q ss_pred CCceEEEeeccccHHHHHHHH-hCCC--cEEEEeCCHHHHHHHHHHcCC-CCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLI-RYFN--EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~-~~~~--~v~gvD~S~~~l~~ar~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
++.+|+|||||.|.++..++. ..+. +++++|+++.+++.|++.+.. .++ ..+++|..+|+.+.....+.||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhcccccCCcC
Confidence 678999999998865444433 3333 699999999999999999853 444 4679999999988643346899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++. +++++..++...+++++.+.|+|||.+++.
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99999 999997678889999999999999999996
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-14 Score=125.10 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=87.9
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCC----
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG---- 229 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~---- 229 (284)
++.+|||+|||+|..+..+++... .+|+++|+|+.||+.+++++.... ...++.++++|+.+. +....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEcccchhhhhcccccC
Confidence 557899999999999999987753 479999999999999998865421 124577789998763 33221
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
...++++..+++++++++...++++++++|+|||.|+|.-+...+
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 344566667899999889999999999999999999986554443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=118.62 Aligned_cols=145 Identities=20% Similarity=0.326 Sum_probs=109.7
Q ss_pred HHHhhchhcccccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC---cE
Q 023288 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN---EV 183 (284)
Q Consensus 107 ~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v 183 (284)
..+..||+....... ..+.-.+.++...+..++... .....+|||||||.|.....+++.... .|
T Consensus 33 ~~~~k~wD~fy~~~~-----------~rFfkdR~wL~~Efpel~~~~-~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v 100 (264)
T KOG2361|consen 33 REASKYWDTFYKIHE-----------NRFFKDRNWLLREFPELLPVD-EKSAETILEVGCGVGNTVFPLLKTSPNNRLKV 100 (264)
T ss_pred cchhhhhhhhhhhcc-----------ccccchhHHHHHhhHHhhCcc-ccChhhheeeccCCCcccchhhhcCCCCCeEE
Confidence 456789986543332 233445677777777766531 222338999999999999999976554 79
Q ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCCceeEEEecchhccCChhhHHHHHHHHHhcC
Q 023288 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL 259 (284)
Q Consensus 184 ~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~L 259 (284)
.++|.||..++..+++.... ..++...+.|++.- +++.+++|.|++.++|..++++....+++++.++|
T Consensus 101 ~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 101 YACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred EEcCCChHHHHHHHhccccc-------hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHh
Confidence 99999999999999887653 23444445555432 35678999999999999999999999999999999
Q ss_pred CCCcEEEEEec
Q 023288 260 KPGGFFVLKEN 270 (284)
Q Consensus 260 kpGG~lii~e~ 270 (284)
||||.+++.|-
T Consensus 174 KPGG~llfrDY 184 (264)
T KOG2361|consen 174 KPGGSLLFRDY 184 (264)
T ss_pred CCCcEEEEeec
Confidence 99999999764
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=119.92 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=84.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD 232 (284)
...+|||||||+|.++..++...+. .|+|+|+|+.|++.|+++....++ .+++++++|+.+++ ++++++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCcee
Confidence 4568999999999999999987654 799999999999999988766443 47899999997653 4456899
Q ss_pred EEEecchhccCChh------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|++++...+.... ....++++++++|||||.|++.
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 99988765443211 0147999999999999999886
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=119.81 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=85.6
Q ss_pred ccccHHHHHHHHHhhcCCccCCCCc-eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc
Q 023288 135 IKGSEAFLQMLLSDRFPNARNNQHL-VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (284)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~-~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~ 213 (284)
...+..++..+.. ..++. .++|+|||+|..++ .++.++.+|+|+|+|+.||+.|++.....-. ...
T Consensus 17 P~YPtdw~~~ia~-------~~~~h~~a~DvG~G~Gqa~~-~iae~~k~VIatD~s~~mL~~a~k~~~~~y~-----~t~ 83 (261)
T KOG3010|consen 17 PSYPTDWFKKIAS-------RTEGHRLAWDVGTGNGQAAR-GIAEHYKEVIATDVSEAMLKVAKKHPPVTYC-----HTP 83 (261)
T ss_pred CCCcHHHHHHHHh-------hCCCcceEEEeccCCCcchH-HHHHhhhhheeecCCHHHHHHhhcCCCcccc-----cCC
Confidence 3444566665543 22333 79999999996555 5557788999999999999999987654211 122
Q ss_pred eeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
..+...++.++.-.+++.|+|++..++|++. +..+++++.|+||+.|-++..-+
T Consensus 84 ~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd---le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 84 STMSSDEMVDLLGGEESVDLITAAQAVHWFD---LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred ccccccccccccCCCcceeeehhhhhHHhhc---hHHHHHHHHHHcCCCCCEEEEEE
Confidence 3344445555554578999999999999985 55899999999999885555444
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=119.02 Aligned_cols=106 Identities=18% Similarity=0.260 Sum_probs=87.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
..++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++...+ ..+++...++.+++ ...++||+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~fD~ 117 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESG-------LKIDYRQTTAEELAAEHPGQFDV 117 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcC-------CceEEEecCHHHhhhhcCCCccE
Confidence 34678999999999999998886654 59999999999999998865432 24677777777664 23478999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|++..+++|.+ +...+++++.+.|+|||.+++...
T Consensus 118 Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 118 VTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEec
Confidence 99999999998 556899999999999999998754
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.6e-14 Score=120.89 Aligned_cols=217 Identities=20% Similarity=0.183 Sum_probs=140.3
Q ss_pred cCchhhhhhhhhHHHHhhhhcccccCCCCCCccccccccCCCCCCcccCHHHHHHHHhcCCccc--hhhhhHHH-HH---
Q 023288 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQ--QEKKTQWY-RE--- 108 (284)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--~~~~~~~~-~~--- 108 (284)
..-.-|+-|+|-++..+.+.+.+...- +....+.+.|...+| ..+..++..+.....-.. -+....+| ..
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 455668889999999999988776632 234557777888888 778888887775431111 01111111 10
Q ss_pred ---HhhchhcccccccccccCCCcccc-ccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cE
Q 023288 109 ---GISYWEGVEASVDGVLGGFGNVNE-VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV 183 (284)
Q Consensus 109 ---~~~yW~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v 183 (284)
...+|.....-.+..+-...+++. ..+....++|...+. ...+.+|||+|||.|.++..+++..+. ++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~-------~~~~~~vlDlGCG~Gvlg~~la~~~p~~~v 185 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLP-------PDLGGKVLDLGCGYGVLGLVLAKKSPQAKL 185 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCC-------ccCCCcEEEeCCCccHHHHHHHHhCCCCeE
Confidence 112333221112222222222332 234444455554443 334559999999999999999987764 89
Q ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhh---HHHHHHHHHhcCC
Q 023288 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD---FVSFFKRAKVGLK 260 (284)
Q Consensus 184 ~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~---~~~~l~~~~r~Lk 260 (284)
+.+|+|...++.+|+++..++. .+..++..|+.+- .+ ++||+|+|+-.||-=..-. ..+++..+.+.|+
T Consensus 186 tmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~~~-v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~ 257 (300)
T COG2813 186 TLVDVNARAVESARKNLAANGV------ENTEVWASNLYEP-VE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK 257 (300)
T ss_pred EEEecCHHHHHHHHHhHHHcCC------CccEEEEeccccc-cc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999987653 2224555555442 23 3999999999998543211 3479999999999
Q ss_pred CCcEEEEEec
Q 023288 261 PGGFFVLKEN 270 (284)
Q Consensus 261 pGG~lii~e~ 270 (284)
+||.|.|+-|
T Consensus 258 ~gGeL~iVan 267 (300)
T COG2813 258 PGGELWIVAN 267 (300)
T ss_pred cCCEEEEEEc
Confidence 9999999877
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.2e-14 Score=115.65 Aligned_cols=102 Identities=18% Similarity=0.242 Sum_probs=81.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..+++.+.. +|+++|+|+.+++.+++++...+. .+++++++|... .. .++||+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~~~~~d~~~-~~-~~~~D~ 100 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------GNIDIIPGEAPI-EL-PGKADA 100 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCeEEEecCchh-hc-CcCCCE
Confidence 446789999999999999988876543 799999999999999998765432 357888888742 23 358999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|++....++ +..+++.+.+.|+|||.+++..
T Consensus 101 v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 101 IFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEECCCccC-----HHHHHHHHHHhcCCCeEEEEEE
Confidence 999876443 4478999999999999998865
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=116.86 Aligned_cols=101 Identities=19% Similarity=0.171 Sum_probs=81.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||||||+|..+..+++... .+|+++|+++.+++.+++++...+. .++++.++|......+.++||
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcC
Confidence 56788999999999999987775532 3799999999999999999876543 468999999877655567999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++.....+++ ..+.+.|||||+|++..
T Consensus 148 ~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 999987765543 34667899999998864
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=115.84 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=80.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||||||+|.++..++..... +|+++|+++.+++.|++++...++ .+++++++|..+.....++||
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCC
Confidence 567889999999999999987765432 599999999999999999876543 468899999877544456899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++.....+++ ..+.+.|+|||++++.
T Consensus 149 ~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 149 RIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred EEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 999887765544 3467889999999886
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.4e-14 Score=122.92 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=80.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++....++ ...+.+...+... ..+++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~~~--~~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYLEQ--PIEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeccccc--ccCCCceEEEE
Confidence 5689999999999999988766666899999999999999999876543 2335555555322 23468999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+...+ .+..++.++.++|||||.++++..
T Consensus 232 n~~~~-----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 232 NILAE-----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ecCHH-----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 76533 456899999999999999999864
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-13 Score=114.15 Aligned_cols=127 Identities=13% Similarity=-0.027 Sum_probs=97.8
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCC------CCCCCCCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMH 211 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~------~~~~~~~~ 211 (284)
...+|...+.... ..++.+||+.|||.|..+.+|++.++. |+|+|+|+..++.+.+..... +.......
T Consensus 28 pnp~L~~~~~~l~----~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 102 (226)
T PRK13256 28 PNEFLVKHFSKLN----INDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG 102 (226)
T ss_pred CCHHHHHHHHhcC----CCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceecc
Confidence 3445545554332 235679999999999999999988887 999999999999987643110 00001113
Q ss_pred cceeEEEcCCCCCCCC---CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 212 KATNFFCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 212 ~~~~~~~~d~~~~~~~---~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+++++++|+.+++.. .+.||+|+-..+|++++++...++.+.+.++|+|||.+++.-
T Consensus 103 ~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 103 DDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 4689999999998642 268999999999999999999999999999999999888763
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-14 Score=108.26 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=85.9
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Iv 235 (284)
+.+|||+|||+|.++..+++.+..+++|+|+++..++.++.++...+. ..+++++++|+.+.. .++++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhchhhccCceeEEEE
Confidence 468999999999999999988745899999999999999999876544 356899999988765 6678999999
Q ss_pred ecchhccCC------hhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~------~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++..+.... ......+++++.++|||||.+++.-
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 998766431 1135689999999999999998863
|
... |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=119.90 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=84.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
-.+.+|||||||.|+.+..++.+++..|+|+|+++...-..+......+. ...+.+....+++++. .+.||+|+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-----~~~~~~lplgvE~Lp~-~~~FDtVF 187 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-----DPPVFELPLGVEDLPN-LGAFDTVF 187 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-----CccEEEcCcchhhccc-cCCcCEEE
Confidence 36789999999999999999999999999999999877664432221111 1223333357777776 57999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|.+||.|.. +....|+++...|+|||.+++-..+
T Consensus 188 ~MGVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 188 SMGVLYHRR--SPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred EeeehhccC--CHHHHHHHHHHhhCCCCEEEEEEee
Confidence 999999998 6669999999999999999985443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-15 Score=122.09 Aligned_cols=109 Identities=22% Similarity=0.288 Sum_probs=85.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (284)
.+-.++||+|||||..+..+. ....+++|||+|.+|+++|.++--. -.+.++++..+. ..+.+||+
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg~Y-----------D~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKGLY-----------DTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred CccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhccch-----------HHHHHHHHHHHhhhccCCcccc
Confidence 346799999999999999765 4455799999999999999987543 223444444332 34578999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE-eccCCCC-ccc
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIARSG-TFL 278 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~-e~~~~~~-~~~ 278 (284)
|++..|+.++. ++..++.-+...|+|||.|.|+ |....++ |++
T Consensus 192 i~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l 236 (287)
T COG4976 192 IVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL 236 (287)
T ss_pred hhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCCeec
Confidence 99999999999 8889999999999999999998 5544443 443
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=116.69 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=88.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv 235 (284)
.+.+|||+|||+|.++..++..+. +++++|+|+.+++.+++++...+. .++++...|+.+++.. +++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccEEE
Confidence 467999999999999998876655 599999999999999998765321 1578888888777544 37899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..+++|+. +...+++++.++|+|||.+++...
T Consensus 118 ~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999998 566999999999999999998764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=115.19 Aligned_cols=108 Identities=15% Similarity=0.045 Sum_probs=82.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++...+ .++.+++.|+.+. .++++||+|
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~-------~~~~~~~~d~~~~-~~~~~fD~V 105 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG-------VDVDVRRGDWARA-VEFRPFDVV 105 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC-------CeeEEEECchhhh-ccCCCeeEE
Confidence 34567999999999999998886655579999999999999999876532 2467888888664 345689999
Q ss_pred EecchhccCCh-------------------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~-------------------~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+++..+...+. ..+..+++++.++|||||.+++...
T Consensus 106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99854332211 1245788999999999999998643
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=118.15 Aligned_cols=98 Identities=19% Similarity=0.136 Sum_probs=74.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...+. ...+.+..+ +.+||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~-----~~~~~~~~~--------~~~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV-----ELNVYLPQG--------DLKADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEccC--------CCCcCEEE
Confidence 46789999999999999977765655799999999999999999876443 112222222 12799999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++... +.+..++.++.++|||||.++++...
T Consensus 185 ani~~-----~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 185 ANILA-----NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred EcCcH-----HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 87542 24567899999999999999998653
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.9e-13 Score=110.75 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=81.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
..++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+++++...++ ..++.++++|..+.. ...++|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhhhHhhcCCCC
Confidence 5678899999999999999887643 2 3799999999999999998766442 246788888887642 223689
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
|.|++... ..++..+++.+.++|||||.+++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99998642 22566899999999999999987
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-13 Score=112.44 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=76.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 229 (284)
..++.+|||+|||+|.++..+++... .+|+++|+|+.|++.+.+++.. ..++.++.+|+... ++. .
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~-~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVV-E 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhcc-c
Confidence 56788999999999999998886542 3799999999999988777654 24678888888652 122 5
Q ss_pred ceeEEEecchhccCChh-hHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~-~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+||+|++.. +++ ....+++++.++|||||.++++
T Consensus 141 ~~D~i~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 141 KVDVIYQDV-----AQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred cCCEEEECC-----CChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 699998542 222 2345789999999999999993
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-13 Score=113.97 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=90.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
.....+|||+|||+|.++..++++.. .++++||+.+.|.+.|+++.+.+++ ..++++++.|+.++. ....+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHHHhhhccccccc
Confidence 34478999999999999998887744 4899999999999999999988665 578999999999875 334579
Q ss_pred eEEEecchhccCCh----------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTD----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~----------------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+|+|+-.+.-... -+++++++.+.++|||||.+.++
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 99999865443322 24789999999999999999986
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=114.66 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=80.9
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++++++|+.+. .++++||+|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~D~~~~-~~~~~fD~Iv 194 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQSDLFAA-LPGRKYDLIV 194 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhc-cCCCCccEEE
Confidence 4568999999999999998876543 799999999999999999876543 24688999998543 2345899999
Q ss_pred ecchh------ccC-------Ch----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCI------GHL-------TD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l------~~~-------~~----------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++... .++ +. +....+++++.+.|+|||++++-
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87321 111 10 12367899999999999998873
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.5e-13 Score=111.41 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=76.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--------
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 225 (284)
.++.+|||||||+|.++..+++.... .|+++|+++ |. . ..++.++++|+.+..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~--------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P--------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C--------CCCcEEEecCCCChHHHHHHHHH
Confidence 46779999999999999988877532 799999998 21 1 134789999998853
Q ss_pred CCCCceeEEEecchhccCChh--h-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 PETGRYDVIWVQWCIGHLTDD--D-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~--~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+.+++||+|+++.+.++...+ + ...+++++.++|||||.|++...
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 456789999998776665422 1 24689999999999999999754
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=110.39 Aligned_cols=101 Identities=18% Similarity=0.086 Sum_probs=79.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|..+..++... .+++++|+++.+++.+++++...++ .++++..+|..+...+.++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEE
Confidence 5677899999999999998666554 4799999999999999999876543 35888999876543334789999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++...+++++ +.+.+.|+|||.+++.-.
T Consensus 149 ~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 9988766543 456789999999998643
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.1e-13 Score=119.48 Aligned_cols=107 Identities=19% Similarity=0.148 Sum_probs=86.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD 232 (284)
..+..+||||||+|.++..++...+. .++|+|+++.|++.+.+++...++ .++.++++|+..+ .++++++|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhhhhCCCCcee
Confidence 45568999999999999999988754 799999999999999998876553 5788999998764 35678999
Q ss_pred EEEecchhccCChhh----HHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDD----FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~----~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|++++...|..... ...++++++|+|+|||.+.+.
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 999876544322111 257999999999999999995
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-13 Score=109.67 Aligned_cols=100 Identities=19% Similarity=0.191 Sum_probs=81.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~Iv 235 (284)
.+.-|||||||+|..+..+...+. .++|+|+|+.|++.|.++-- ..+++.+|+-. +|+.+++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----------egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----------EGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----------hcCeeeeecCCCCCCCCCccceEE
Confidence 577899999999999997776664 59999999999999987421 24577788754 688899999999
Q ss_pred ecchhccC---------ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHL---------TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~---------~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+...++++ |...+..|+..++.+|++|+..++.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 87666544 3344778999999999999999885
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.2e-13 Score=108.09 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=72.5
Q ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCc
Q 023288 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (284)
Q Consensus 184 ~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG 263 (284)
+|+|+|++|++.|+++....+. ....+++++++|+.++++++++||+|++..++++++ +...++++++|+|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCe
Confidence 5899999999999877542110 002468999999999999888999999999999998 66799999999999999
Q ss_pred EEEEEeccCCCC
Q 023288 264 FFVLKENIARSG 275 (284)
Q Consensus 264 ~lii~e~~~~~~ 275 (284)
.+++.|...++.
T Consensus 76 ~l~i~d~~~~~~ 87 (160)
T PLN02232 76 RVSILDFNKSNQ 87 (160)
T ss_pred EEEEEECCCCCh
Confidence 999999765543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=112.67 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=91.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...++ ..+++++.+|+.+.- .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda~~~L~~l~~~~ 140 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDALSALDQLLNND 140 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccHHHHHHHHHhCC
Confidence 34567999999999999888876533 2899999999999999999988765 356899999887641 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCCC
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSH 281 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~~ 281 (284)
+.++||+|++... .+....++..+.+.|+|||.+++ ||+.-.|.+.+++
T Consensus 141 ~~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~-dn~l~~G~v~~~~ 189 (234)
T PLN02781 141 PKPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF-DNTLWFGFVAQEE 189 (234)
T ss_pred CCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE-EcCCcCCeecCcc
Confidence 2368999987543 23566889999999999997555 8887778777654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-12 Score=94.97 Aligned_cols=102 Identities=26% Similarity=0.337 Sum_probs=82.8
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEEecc
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv~~~ 238 (284)
+|+|+|||+|..+..++.....+++++|+++.+++.+++...... ..++.+...|+.+... ..++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 489999999999998886344589999999999999985332211 3568888898888764 457899999999
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++++ .+....+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99884 346779999999999999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-12 Score=114.20 Aligned_cols=103 Identities=20% Similarity=0.175 Sum_probs=79.9
Q ss_pred ceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ++++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESDLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECchhhhC-CCCCccEEEEC
Confidence 68999999999999998876543 799999999999999999876543 245889999986532 34589999987
Q ss_pred chh-------------ccCCh----------hhHHHHHHHHHhcCCCCcEEEE
Q 023288 238 WCI-------------GHLTD----------DDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 238 ~~l-------------~~~~~----------~~~~~~l~~~~r~LkpGG~lii 267 (284)
... +|-+. +....+++++.+.|+|||.+++
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 321 11111 1246789999999999999988
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=109.61 Aligned_cols=90 Identities=12% Similarity=-0.020 Sum_probs=73.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~I 234 (284)
++.+|||+|||+|.++..++......++|+|+|+.|++.++++ ++++++.|+.+ + ++++++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 5679999999999999988765544689999999999998652 25677788765 3 2556799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~Lkp 261 (284)
+++.++||++ +...+++++.+.+++
T Consensus 80 i~~~~l~~~~--d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATR--NPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcCc--CHHHHHHHHHHhCCe
Confidence 9999999998 566899999887765
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=110.15 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=81.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.+|||+|||+|.++..++..... +++|+|+|+.+++.++++....++ .+++++++|+.+ .+++++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-~~~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFE-PLPGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhc-cCcCCceeEEE
Confidence 4568999999999999999876443 799999999999999998876443 358899999876 34457899999
Q ss_pred ecchhcc------CChh------------------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGH------LTDD------------------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~------~~~~------------------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++..+.. +... ....+++++.++|+|||.+++.
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 8654332 1111 1347889999999999999985
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.1e-12 Score=112.31 Aligned_cols=104 Identities=23% Similarity=0.233 Sum_probs=80.5
Q ss_pred ceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+. .+..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~-~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEP-LAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhcc-CcCCCccEEEEC
Confidence 6899999999999999887654 3799999999999999999876543 23588999998663 333489999987
Q ss_pred c-------------hhccCCh----------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 238 W-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 238 ~-------------~l~~~~~----------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. ++.|-|. .....+++++.+.|+|||++++-
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2 2222221 13567899999999999998873
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=105.93 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (284)
..++.+|||+|||+|.++..++.... .+|+++|+|+.|++.+++++...+. .+++++.+|+.+. ......+|
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------KNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeEEEECchHHHHhhCCCCCC
Confidence 45778999999999999998875533 3799999999999999998865432 3578888887542 21113457
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.|+.... .++..+++++.++|+|||.+++...
T Consensus 112 ~v~~~~~------~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 112 RVCIEGG------RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEEECC------cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 7655321 2456899999999999999998754
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-12 Score=111.05 Aligned_cols=105 Identities=21% Similarity=0.335 Sum_probs=88.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+..+|+|||+|+|.++..+++.++. +++.+|. |.+++.+++ . .+++++.+|+. -+++. +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f-~~~P~--~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFF-DPLPV--ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TT-TCCSS--ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c---------cccccccccHH-hhhcc--ccc
Confidence 345568999999999999999988887 8999998 889999988 1 46999999998 44443 999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCC--cEEEEEeccCCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIARSG 275 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG--G~lii~e~~~~~~ 275 (284)
|++.+++|+.++++...+|+++++.|+|| |+|+|.|.+.++.
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 99999999999999999999999999999 9999999875543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-12 Score=114.77 Aligned_cols=108 Identities=14% Similarity=-0.021 Sum_probs=86.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++...+..+ ..++|+|+++.|++.+++++...+. .++++.++|+.+++..+++||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGI------EDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCC------CCCeEEecchhcCCcccCCCCEE
Confidence 4567899999999999998766544 4699999999999999999876554 23778899999988777899999
Q ss_pred EecchhccC-------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~-------~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+++..+... ..+-...+++++.++|||||++++.-
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 997443211 11225789999999999999998864
|
This family is found exclusively in the Archaea. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=109.97 Aligned_cols=126 Identities=18% Similarity=0.165 Sum_probs=93.2
Q ss_pred ccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC-CCCC-----CCCC
Q 023288 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-ENHM-----APDM 210 (284)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~-~~~~-----~~~~ 210 (284)
.....|..++.. +. ..++.+||..|||.|.....|+++++. |+|+|+|+..++.+.+.... .... ....
T Consensus 21 ~~~p~L~~~~~~-l~---~~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 21 EPNPALVEYLDS-LA---LKPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp TSTHHHHHHHHH-HT---TSTSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCCHHHHHHHHh-cC---CCCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 334455555554 22 456779999999999999999988875 99999999999998544322 0000 0011
Q ss_pred CcceeEEEcCCCCCCCCC-CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 211 HKATNFFCVPLQDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~-~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
..+++++++|+-+++... ++||+|+-..+|+.++++...++.+.+.++|+|||.+++
T Consensus 96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred CCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 346899999999876543 589999999999999999999999999999999999433
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-12 Score=109.70 Aligned_cols=104 Identities=14% Similarity=-0.032 Sum_probs=77.1
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC---CCCC
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPET 228 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~ 228 (284)
...++.+|||+|||+|.++..++.... ..|+++|+|+.|++...+.+.. ..|+.++..|+... ....
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~~p~~y~~~~ 200 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDARYPQKYRMLV 200 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCccChhhhhccc
Confidence 367888999999999999999887643 2799999999876555554433 24678888887642 2223
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+||+|++.... + ++...++.++.++|||||.|+|..
T Consensus 201 ~~vDvV~~Dva~---p-dq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 201 PMVDVIFADVAQ---P-DQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CCCCEEEEeCCC---c-chHHHHHHHHHHhccCCCEEEEEE
Confidence 589999987742 2 244467778999999999999953
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=100.83 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE
Q 023288 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (284)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~ 218 (284)
.-+.-+....|. +.++.+++|||||||..+..++..++. +|+++|-++++++..+++....+. .|+.++.
T Consensus 20 ~EIRal~ls~L~---~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n~~vv~ 90 (187)
T COG2242 20 EEIRALTLSKLR---PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------DNLEVVE 90 (187)
T ss_pred HHHHHHHHHhhC---CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------CcEEEEe
Confidence 334434434444 788999999999999999999854544 899999999999999999887653 6889999
Q ss_pred cCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 219 VPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 219 ~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++.+.-....+||.||.... . .+..+++.+...|||||++++.
T Consensus 91 g~Ap~~L~~~~~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 91 GDAPEALPDLPSPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred ccchHhhcCCCCCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEE
Confidence 998775433237999999888 3 4458999999999999999985
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=104.06 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=78.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (284)
.++.+|||+|||.|.+...|......+..|+|+++..+..+.++- +.++++|+.+- .+++++||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG-------------v~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG-------------VSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC-------------CCEEECCHHHhHhhCCCCCccE
Confidence 478999999999999999888755557999999999998887652 56888988764 378899999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
||++.+++++.. ...+++++.|+ |...+++
T Consensus 79 VIlsqtLQ~~~~--P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 79 VILSQTLQAVRR--PDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred EehHhHHHhHhH--HHHHHHHHHHh---cCeEEEE
Confidence 999999999984 44899999877 4455554
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8e-12 Score=103.30 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=82.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...+.. ..++.+...|+.+. +.+.+||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~-~~~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFEP-FRGDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccccc-ccccCceEEE
Confidence 45678999999999999998877 457999999999999999887654431 11267788887663 3345899999
Q ss_pred ecchhccCC-------------------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLT-------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~-------------------~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..+...+ ...+..+++++.++|||||.+++...
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 876543211 12256789999999999999888643
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-12 Score=110.61 Aligned_cols=104 Identities=24% Similarity=0.238 Sum_probs=79.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.+++..+.-+..+++|+|+.|-.++.|++++..++... .+.....+.... ...++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-----~~~~~~~~~~~~-~~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-----LVQAKGFLLLEV-PENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-----hhhcccccchhh-cccCcccEEE
Confidence 3788999999999999998888888899999999999999999998765421 111222222222 2236999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++=. - +-+..+...+.+.|||||+++++-.
T Consensus 235 ANIL-A----~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 235 ANIL-A----EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ehhh-H----HHHHHHHHHHHHHcCCCceEEEEee
Confidence 8763 2 2466899999999999999999843
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-12 Score=113.28 Aligned_cols=133 Identities=18% Similarity=0.303 Sum_probs=88.7
Q ss_pred cccHHHHHHHHHhhcCC--ccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC----CCCCCCC
Q 023288 136 KGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP----ENHMAPD 209 (284)
Q Consensus 136 ~~~~~~l~~~~~~~l~~--~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~----~~~~~~~ 209 (284)
.....++...+...... ....++.+|||+|||-|.....+.......++|+|+|...|+.|+++... ..-....
T Consensus 39 R~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~ 118 (331)
T PF03291_consen 39 RNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYR 118 (331)
T ss_dssp HHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSE
T ss_pred HHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccc
Confidence 33444555555433321 01126789999999988887778878888999999999999999999821 0000011
Q ss_pred CCcceeEEEcCCCCC------CCCCCceeEEEecchhccC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 210 MHKATNFFCVPLQDF------TPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 210 ~~~~~~~~~~d~~~~------~~~~~~fD~Iv~~~~l~~~--~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
......|+.+|.... +.....||+|-|.+++||. +.+....+|+++.+.|+|||+|+.+
T Consensus 119 ~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 119 FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 123466788877542 2223599999999999987 4455778999999999999999987
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=112.21 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=76.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++...+..+..+|+++|++|..++.|++++..++.. .++.+ ....+ ...++||+|+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-----~~~~v--~~~~~--~~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-----DRIEV--SLSED--LVEGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-----TCEEE--SCTSC--TCCS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-----eeEEE--EEecc--cccccCCEEE
Confidence 366799999999999999888778879999999999999999999877652 23322 22222 2237999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++-... -+..++..+.++|+|||+++++-
T Consensus 231 ANI~~~-----vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 231 ANILAD-----VLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp EES-HH-----HHHHHHHHCHHHEEEEEEEEEEE
T ss_pred ECCCHH-----HHHHHHHHHHHhhCCCCEEEEcc
Confidence 886633 56688899999999999999974
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-12 Score=111.85 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=83.4
Q ss_pred CCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
.++.+||+||||+|..+..+++. ...+|++||+++.+++.|++.+...+.. .....+++++.+|...+. ...++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCcccE
Confidence 45679999999999999998865 3458999999999999999987532110 001357889999987643 23568999
Q ss_pred EEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++...-.+.+... ...+++.+.+.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865433333222 257899999999999998874
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=106.84 Aligned_cols=107 Identities=25% Similarity=0.266 Sum_probs=80.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..++.... .+++++|+|+.+++.+++++.. .. ..++.++.+|+.+.. .+++||+
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~-----~~~i~~~~~d~~~~~-~~~~fD~ 178 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GL-----GARVEFLQGDWFEPL-PGGRFDL 178 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CC-----CCcEEEEEccccCcC-CCCceeE
Confidence 34667999999999999999887653 3799999999999999999761 11 346889999885532 2468999
Q ss_pred EEecchhcc------CC------------------hhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGH------LT------------------DDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~------~~------------------~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+++....- +. -+....+++++.++|+|||.+++.
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 998643211 11 012467888999999999999984
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=112.55 Aligned_cols=104 Identities=20% Similarity=0.200 Sum_probs=78.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~I 234 (284)
++.+|||+|||+|.++..++..... +|+++|+|+.|++.|++++...+ .+++++++|+.+... ..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-------~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-------ARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEcchhccccccCCCccEE
Confidence 4568999999999999988865443 79999999999999999986542 368899999865432 23589999
Q ss_pred EecchhccCCh-----------------------hhHHHHHHHHHhcCCCCcEEEE
Q 023288 235 WVQWCIGHLTD-----------------------DDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 235 v~~~~l~~~~~-----------------------~~~~~~l~~~~r~LkpGG~lii 267 (284)
+++.......+ +-...+++.+.+.|+|||.+++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99764311100 0145777888899999999876
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=101.92 Aligned_cols=101 Identities=23% Similarity=0.218 Sum_probs=84.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|+.+.-++ +...+|+.+|..+...+.|++++...|+ .|+.+.++|...--.+.++||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla-~l~~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLA-RLVGRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHH-HHhCeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEE
Confidence 6788999999999999999555 5555799999999999999999988775 46899999987754555799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+.......+| +.+.+.|||||++++-..
T Consensus 143 ~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 9999888777 235667999999999755
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=110.58 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=79.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++.... .|+++|+++.|++.|++++...+. .++.++++|..+...+.++||
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCcc
Confidence 456789999999999999988865432 599999999999999998876543 457888898876655556899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++...+.+++ ..+.+.|+|||.+++..
T Consensus 152 ~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 152 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 999986655443 34567899999998854
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=106.88 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=80.5
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
...+|||+|||+|.++..++.+. ..+|+++|+|+.|++.++++.. +++++++|+.++.. ..+||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~~-~~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFEFES-NEKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhhhcc-cCCCcEEE
Confidence 45689999999999999887654 3479999999999999998742 47789999988754 36899999
Q ss_pred ecchhccCChhh------------------HHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDD------------------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~------------------~~~~l~~~~r~LkpGG~lii~ 268 (284)
++..+++.+..+ +..+++....+|+|+|.+++.
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 999988875442 245677788999999977775
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=107.76 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=81.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
.++.+|||||||+|.++..++...+. +++++|+++.+++.|++++...+. ..+++++.+|..++. ..+++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCCCE
Confidence 35678999999999999988876544 799999999999999999764321 357889999986542 22358999
Q ss_pred EEecchh-ccCChh-hHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCI-GHLTDD-DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l-~~~~~~-~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++...- ...+.. ....+++++.++|+|||++++.
T Consensus 140 I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 140 ILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 9975311 111110 1358999999999999999984
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=103.39 Aligned_cols=118 Identities=22% Similarity=0.334 Sum_probs=74.8
Q ss_pred CCCCceEEEeeccccHH----HHHHHH---hCCC---cEEEEeCCHHHHHHHHHHc-------------------C--CC
Q 023288 155 NNQHLVALDCGSGIGRI----TKNLLI---RYFN---EVDLLEPVSHFLDAARESL-------------------A--PE 203 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~----s~~l~~---~~~~---~v~gvD~S~~~l~~ar~~~-------------------~--~~ 203 (284)
..+..+|+..||+||.- +..+.+ .... ++.|+|+|+.+|+.|++-. . ..
T Consensus 29 ~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~ 108 (196)
T PF01739_consen 29 PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGG 108 (196)
T ss_dssp S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CC
T ss_pred CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCC
Confidence 34678999999999953 332222 1122 7999999999999998721 0 00
Q ss_pred CCC-CCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE--eccC
Q 023288 204 NHM-APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (284)
Q Consensus 204 ~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (284)
+.. ......++.|...|+.+.+...+.||+|+|.+|+.|+..+....+++.+++.|+|||+|++. |...
T Consensus 109 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~ 180 (196)
T PF01739_consen 109 GYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP 180 (196)
T ss_dssp CTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred ceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence 111 22223578999999988444557999999999999999998999999999999999999997 5544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=99.75 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=78.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++++ ..+++++|+++.|++.+++++.. ..+++++.+|+.++++++.+||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEE
Confidence 456679999999999999999977 45799999999999999998754 246889999999988776679999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++..++ +..+.+..++++. .+.++|.+++.
T Consensus 82 i~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred EECCCcc-cHHHHHHHHHhcC--CCcceEEEEEE
Confidence 9987654 3333344444322 24577877774
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-12 Score=104.82 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=83.6
Q ss_pred HhhchhcccccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023288 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (284)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (284)
+.+.+.+-+..|+.+..||..........+-+.+...+.. .++...|.|+|||.+.++..+- ... +|...|+
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~------~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDL 101 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK------RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDL 101 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT------S-TTS-EEEES-TT-HHHHH---S----EEEEES
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh------cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeec
Confidence 4455555666677666777665445555555555555542 3456799999999999987542 333 4999997
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 189 S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
-+ .+-.+..+|+.+.|++++++|++|++.+|+.. ++..++.++.|+|||||.|.|+
T Consensus 102 va---------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 102 VA---------------------PNPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp S----------------------SSTTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEE
T ss_pred cC---------------------CCCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEE
Confidence 42 22346789999999999999999999988764 5668999999999999999999
Q ss_pred eccC
Q 023288 269 ENIA 272 (284)
Q Consensus 269 e~~~ 272 (284)
|..+
T Consensus 158 EV~S 161 (219)
T PF05148_consen 158 EVKS 161 (219)
T ss_dssp EEGG
T ss_pred Eecc
Confidence 9754
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=102.99 Aligned_cols=97 Identities=22% Similarity=0.146 Sum_probs=71.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+|||+|||+|.++..++..... +|+++|+|+.+ . ..++++++.|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----------CCCceEEEeeCCChhHHHHHHH
Confidence 457889999999999999988776533 69999999854 1 134678888887642
Q ss_pred -CCCCceeEEEecchhc--------cCC-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 -PETGRYDVIWVQWCIG--------HLT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~--------~~~-~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+.++||+|++..+.+ |.. .+....+++++.++|+|||.+++.
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 3456899999865422 111 112468999999999999999985
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=101.98 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=98.2
Q ss_pred cccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc
Q 023288 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (284)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~ 213 (284)
.....++..++. ...+.+|||||.++|..+.+++.... . +++.+|+++++.+.|+++++..|+ ...
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDR 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cce
Confidence 444556665554 44678999999999999999987655 2 799999999999999999998876 345
Q ss_pred eeEEE-cCCCCCC--CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 214 TNFFC-VPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 214 ~~~~~-~d~~~~~--~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
+..+. +|..+.- ...++||+||.-.. ..+...++..+.++|+|||.+++ ||+...|.+.++
T Consensus 113 i~~~~~gdal~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~-DNvl~~G~v~~~ 176 (219)
T COG4122 113 IELLLGGDALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVA-DNVLFGGRVADP 176 (219)
T ss_pred EEEEecCcHHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEE-eecccCCccCCc
Confidence 67777 4554431 34589999997554 34567899999999999996655 999888877665
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-11 Score=105.09 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=92.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--C----
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P---- 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~---- 226 (284)
..++.+|||||||+|..+..++..... .|+.+|.++++.+.|+++++..|+ ..+++++.+|+.+.- +
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA~e~L~~l~~~~ 190 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLAAESLKSMIQNG 190 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcc
Confidence 345689999999999999988864322 699999999999999999988776 457899999876531 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCCC
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSH 281 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~~ 281 (284)
..++||+|+.-.. ..+...++..+.++|+|||.+++ ||+.-.|.+.|+.
T Consensus 191 ~~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~-DNvL~~G~V~d~~ 239 (278)
T PLN02476 191 EGSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVM-DNVLWHGRVADPL 239 (278)
T ss_pred cCCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE-ecCccCCcccCcc
Confidence 1368999997654 34677899999999999998665 8888888877653
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-11 Score=98.80 Aligned_cols=130 Identities=17% Similarity=0.191 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~ 217 (284)
...+...+.+.+. ..+.+|||||||||..+.+++...+. ...-.|+.+..+.-.+......++.+.... +
T Consensus 11 k~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P-----~ 81 (204)
T PF06080_consen 11 KDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP-----L 81 (204)
T ss_pred HhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC-----e
Confidence 3445555555544 12226999999999999999987766 677889999888777776666555433332 2
Q ss_pred EcCCCCC--CC------CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcc
Q 023288 218 CVPLQDF--TP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 277 (284)
Q Consensus 218 ~~d~~~~--~~------~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~ 277 (284)
..|+..- +. ..++||.|++.+++|-++++....+|+.+.++|+|||.|++.-....+|.+
T Consensus 82 ~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ 149 (204)
T PF06080_consen 82 ALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKF 149 (204)
T ss_pred EeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEe
Confidence 3444433 21 246899999999999999999999999999999999999998776666644
|
The function of this family is unknown. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=114.98 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=78.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++++++|+.+. .+.++||+|+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~~-~~~~~fDlIv 211 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFEN-IEKQKFDFIV 211 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhhh-CcCCCccEEE
Confidence 3468999999999999988876443 799999999999999999866543 24678888887542 2346899999
Q ss_pred ecchhc--------------cCC------h----hhHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIG--------------HLT------D----DDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~--------------~~~------~----~~~~~~l~~~~r~LkpGG~lii 267 (284)
++.... |-| . +.+..+++.+.++|+|||.+++
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 864211 111 0 1245678889999999999987
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=103.04 Aligned_cols=113 Identities=17% Similarity=0.265 Sum_probs=90.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------CCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 228 (284)
++.+||||||++|..+..++...+. +|+.+|+++...+.|++.+...|+ ..+++++.+|..+.- .+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEeccHhhHHHHHhccCC
Confidence 5679999999999999999875443 899999999999999999987765 467999999886531 113
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
++||+|+.-.. ..+...++..+.++|+|||.+++ ||+.-.|.+.++
T Consensus 120 ~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~-DN~l~~G~V~~~ 165 (205)
T PF01596_consen 120 GQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIA-DNVLWRGSVADP 165 (205)
T ss_dssp TSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEE-ETTTGGGGGGST
T ss_pred CceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEE-ccccccceecCc
Confidence 58999997664 34677889999999999997665 888888877765
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-11 Score=103.32 Aligned_cols=102 Identities=22% Similarity=0.211 Sum_probs=76.7
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--CCCceeEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI 234 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD~I 234 (284)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...+ .+++++|+.+... ..++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---------~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---------GTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------CEEEEeechhhcchhcCCCEeEE
Confidence 458999999999999988866433 79999999999999999986532 4678888765321 12579999
Q ss_pred Eecchhc------cCChh------------------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIG------HLTDD------------------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~------~~~~~------------------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++.... .++++ -+..+++.+.++|+|||.+++.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9885432 11111 1357888888999999999985
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-11 Score=111.24 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=85.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 228 (284)
+.++.+|||+|||+|..+..++.... .+|+++|+++.+++.+++++...|+ .++++++.|+.+++ ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence 56778999999999999998887643 2799999999999999999887654 35889999988765 335
Q ss_pred CceeEEEec------chhccCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~------~~l~~~~~-------~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
++||.|++. +++++-++ ++ ...++.++.++|||||.|+.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 689999963 34444332 11 3578999999999999998764
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-11 Score=105.69 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=96.8
Q ss_pred ccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcce
Q 023288 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (284)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~ 214 (284)
+.....|+...+..... .+...++|+|||-|.-...+-..+...++|+||+...++.|+++.....-....+...+
T Consensus 99 lRnfNNwIKs~LI~~y~----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a 174 (389)
T KOG1975|consen 99 LRNFNNWIKSVLINLYT----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA 174 (389)
T ss_pred hhhhhHHHHHHHHHHHh----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence 34455666666654433 46678999999999998888888888999999999999999998764211111112346
Q ss_pred eEEEcCCCCC------CCCCCceeEEEecchhccC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 215 NFFCVPLQDF------TPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 215 ~~~~~d~~~~------~~~~~~fD~Iv~~~~l~~~--~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|+++|...- ++.+.+||+|-|.+++|+. +.+....+++++.+.|+|||+|+-+
T Consensus 175 ~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 175 VFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred EEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 7888876532 2344459999999999976 4455778999999999999999876
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=102.94 Aligned_cols=102 Identities=22% Similarity=0.155 Sum_probs=76.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
.+++.+|||||||+|+.+.-++.-... .|+++|..+...+.|++++...+. .++.+.++|...-..+.++||
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcC
Confidence 678999999999999999966654332 599999999999999999876543 478999999766444457899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.|++......+| ..+.+.|++||++++.-.
T Consensus 144 ~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 144 RIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred EEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 999998876555 236667999999999643
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-11 Score=109.74 Aligned_cols=111 Identities=20% Similarity=0.094 Sum_probs=83.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--CCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~f 231 (284)
+.++.+|||+|||+|..+..+++... .+|+++|+|+.+++.++++++..|. ...+.+..+|....+. +.++|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEecccccccccccccccc
Confidence 56778999999999999998887543 3799999999999999999887654 1234446666654433 45689
Q ss_pred eEEEec------chhccCChh-------h-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~------~~l~~~~~~-------~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|.|++. +++++.++- + ...++.++.++|||||.++++..
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999952 345554421 1 35799999999999999999743
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=108.75 Aligned_cols=109 Identities=19% Similarity=0.135 Sum_probs=83.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
+.++.+|||+|||+|..+..+++... .+|+++|+|+.+++.+++++...++ +++++++|+.+++ ...++|
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccchhhcccCCC
Confidence 56788999999999999999887765 3799999999999999999876543 3578889987754 234689
Q ss_pred eEEEecch------hcc-------CChhh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWC------IGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~------l~~-------~~~~~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|.|++... +.+ ...++ ...++.++.++|||||.++++..
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99995331 111 11111 24789999999999999998753
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-11 Score=102.08 Aligned_cols=130 Identities=17% Similarity=0.218 Sum_probs=95.3
Q ss_pred HhhchhcccccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023288 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (284)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (284)
+.+.+..-+..|+.+..||..........+.+.+...+.. ......|.|+|||.+.++. .....|..+|+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~------r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL 207 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR------RPKNIVIADFGCGEAKIAS----SERHKVHSFDL 207 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh------CcCceEEEecccchhhhhh----ccccceeeeee
Confidence 3455555555666666666543334444455555555543 2456789999999998765 33446999997
Q ss_pred CHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 189 S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
- ..+-+++.+|+.+.|.++++.|++|++.+|+.. ++..+++++.|+|+|||.++|+
T Consensus 208 ~---------------------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 208 V---------------------AVNERVIACDMRNVPLEDESVDVAVFCLSLMGT---NLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred e---------------------cCCCceeeccccCCcCccCcccEEEeeHhhhcc---cHHHHHHHHHHHhccCceEEEE
Confidence 4 234567889999999999999999998887752 6778999999999999999999
Q ss_pred eccC
Q 023288 269 ENIA 272 (284)
Q Consensus 269 e~~~ 272 (284)
|.-+
T Consensus 264 Ev~S 267 (325)
T KOG3045|consen 264 EVKS 267 (325)
T ss_pred ehhh
Confidence 9743
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=108.88 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=82.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.+++++...|+ .++++.+.|+.++. ++++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCcccccc-cCCCCC
Confidence 4567899999999999998777643 23799999999999999999877553 35889999998765 346899
Q ss_pred EEEec----c--hhc-------cCChhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQ----W--CIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~----~--~l~-------~~~~~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++. . ++. +.+.++ ...++.++.+.|||||+++++.
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99952 1 111 112222 2368999999999999999975
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.4e-11 Score=99.24 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=74.2
Q ss_pred CceEEEeeccccHHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~----~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
+.+|||+|||+|.++..++... ..+|+++|+++.+++.|+++.. ++.++..|+....+ +++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CCEEEEcchhcccc-cCCccE
Confidence 5799999999999999887642 2279999999999999998753 36788899877654 468999
Q ss_pred EEecchhccCChhh----------HHHHHHHHHhcCCCCcEEEE
Q 023288 234 IWVQWCIGHLTDDD----------FVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 234 Iv~~~~l~~~~~~~----------~~~~l~~~~r~LkpGG~lii 267 (284)
||++-.+.-....+ ...++..+.++++||+. ++
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 99997766332111 44588888986666664 44
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-11 Score=102.65 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=83.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
+.++.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...+. .++.+.+.|...++...++||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 56778999999999999998877543 2799999999999999999877653 357888888877654445799
Q ss_pred EEEecc------hhccC-------Chhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQW------CIGHL-------TDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~------~l~~~-------~~~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
.|++.- ++.+- ..++ ...+++++.+.|||||+++.+.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999532 22211 1111 2469999999999999998874
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.9e-11 Score=103.35 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=79.8
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~I 234 (284)
.+.+||+||||+|..+..+++.. ..+++++|+++.+++.+++.+...+. .....+++++..|..++. ..+++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 45699999999999999888665 44899999999999999998754211 011245777777765431 123689999
Q ss_pred EecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
++.......+... ...+++.+.+.|+|||.+++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865532222222 357899999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=99.84 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=90.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--C-----
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P----- 226 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~----- 226 (284)
.++.+|||||+++|..+.+++..... +|+.+|.++...+.|++.+...|+ ..+++++.++..+.- .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~~~G~a~e~L~~l~~~~~ 152 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDFREGPALPVLDQMIEDGK 152 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeccHHHHHHHHHhccc
Confidence 35679999999999999988865432 799999999999999999988776 467899999876631 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
..++||+|+.-.- ......++..+.++|+|||.|++ ||+.-.|.+.|+
T Consensus 153 ~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNvl~~G~v~~~ 200 (247)
T PLN02589 153 YHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNTLWNGSVVAP 200 (247)
T ss_pred cCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCCCCCCcccCc
Confidence 1268999997654 33566888999999999998555 888877877765
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=107.23 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=83.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
+.++.+|||+|||+|..+..++... ..+|+++|+|+.+++.+++++...|+ .++++.+.|...++ ..+++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 5677899999999999999888754 23799999999999999999887654 35788999988765 335689
Q ss_pred eEEEecc------hhccCC-------hh-------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQW------CIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~------~l~~~~-------~~-------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|.|++.. ++..-+ .+ ....++.++.+.|||||.++++.
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999632 222111 11 12567999999999999988864
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=102.67 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCC-CCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
..+.+||+||||+|..+..+++.. ..+|++||+++.|++.|++...-..+.. ....++++++.+|..++. ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999888643 2489999999999999997321100000 011467899999987753 3346899
Q ss_pred EEEecchhc---cCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIG---HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~---~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++...-. ....-.-..+++.+.+.|+|||++++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 999874311 11111125799999999999999988743
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-11 Score=100.53 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=89.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
....++|||||-|.+.+.+...+..+++-+|.|..|++.++..-.. .....+...|-+.+++.+++||+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp--------~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDP--------SIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCC--------ceEEEEEecchhcccccccchhhhhh
Confidence 3457999999999999999988988999999999999999865322 34567788898889999999999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+..+|+.. ++...+.+|...|||+|.|+-+
T Consensus 144 SlslHW~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhc--cCchHHHHHHHhcCCCccchhH
Confidence 99999998 8889999999999999988764
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=101.48 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=82.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (284)
.++.+||+||||.|..+..+++.. ..+|+.+|+++.+++.|++.+...+. ....++++++.+|...+. .++++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 457899999999999999888542 23799999999999999998764221 111457899999975442 2246899
Q ss_pred EEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++...-.+.+... -..+++.+.++|+|||.+++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999865433322211 347899999999999999763
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=101.24 Aligned_cols=101 Identities=25% Similarity=0.230 Sum_probs=76.0
Q ss_pred eEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
+|||+|||+|.++..++..... +|+|+|+|+..++.|++++...++ .++.++..|+.+- -.++||+|++|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dlf~~--~~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------VRVLVVQSDLFEP--LRGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeecccc--cCCceeEEEeCC
Confidence 7999999999999999877765 899999999999999999988654 2344555555432 234899999885
Q ss_pred hhcc-----CCh------------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 239 CIGH-----LTD------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 239 ~l~~-----~~~------------------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..-- ..+ +-...++.++.+.|+|||.+++-
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 3111 100 12567888899999999988874
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.1e-11 Score=107.89 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=82.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++. ...++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 56799999999999998777666668999999999999999999876541 136889999987652 1245899
Q ss_pred EEEecchhccCCh-------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~-------~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++....-.-+. ..+..++..+.++|+|||.|+..-
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9998855311111 135566778899999999988754
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=97.72 Aligned_cols=95 Identities=22% Similarity=0.315 Sum_probs=76.9
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
...++||||+|.|..+..++ ..+.+|+++|.|+.|....+++- |.+.+..++.-.+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~kg---------------~~vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKKG---------------FTVLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhCC---------------CeEEehhhhhccCCceEEEee
Confidence 56789999999999999886 77888999999999988777642 122333334334468999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.++|.... +...+++.+++.|+|+|.++++=
T Consensus 158 LNvLDRc~--~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 158 LNVLDRCD--RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhhhccC--CHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999887 55599999999999999999964
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-10 Score=106.59 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=82.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (284)
..++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...++ .+++++++|+.++. ++ ++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~-~~ 320 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFA-EK 320 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhc-cc
Confidence 4567899999999999999888764 23799999999999999999877654 34889999988763 23 68
Q ss_pred eeEEEecch------hccCC-------hhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWC------IGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~------l~~~~-------~~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
||+|++... +.+-+ ..+ ...+++++.++|||||.++.+.
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 999997532 11111 111 2468999999999999999753
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-11 Score=116.78 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=84.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++. ...++||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcCEEE
Confidence 46799999999999999988776667999999999999999999876541 136899999976542 1136899999
Q ss_pred ecchhc-cC--------ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIG-HL--------TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~-~~--------~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..... .- ...+...++..+.++|+|||.+++.-+
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 864311 00 012466789999999999999887543
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=101.09 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=84.4
Q ss_pred CCceEEEeeccccHH----HHHHHHhC-----CCcEEEEeCCHHHHHHHHHHcCC-----------------------CC
Q 023288 157 QHLVALDCGSGIGRI----TKNLLIRY-----FNEVDLLEPVSHFLDAARESLAP-----------------------EN 204 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~----s~~l~~~~-----~~~v~gvD~S~~~l~~ar~~~~~-----------------------~~ 204 (284)
...+|+..||.||.- +..+.+.. .-+|+|+|+|+.+|+.|++-.-. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 358999999999953 33222221 11699999999999999874211 00
Q ss_pred C--CCCCCCcceeEEEcCCCCCCCC-CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 205 H--MAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 205 ~--~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. ........++|...|+.+.+++ .+.||+|+|.+++.|++++....+++++++.|+|||+|++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 0122345788999999875432 57899999999999999888999999999999999999886
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.2e-10 Score=93.02 Aligned_cols=104 Identities=16% Similarity=0.123 Sum_probs=78.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++.++..+|+++|.++.+++.++++++..+. .+++++++|+.++. ....+||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHHHHhhcCCCceEEE
Confidence 4579999999999999977777777899999999999999999876543 35888999886532 2234799999
Q ss_pred ecchhccCChhhHHHHHHHHHh--cCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r--~LkpGG~lii~e 269 (284)
++-.+.. . -...++..+.. +|+|+|.+++..
T Consensus 127 ~DPPy~~-g--~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 127 VDPPFRK-G--LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred ECCCCCC-C--hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 9988532 1 23345555554 489999888753
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.5e-10 Score=93.09 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=76.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCC---C-----------------------
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMA---P----------------------- 208 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~---~----------------------- 208 (284)
..+..+|||||..|.++..+++.... .|.|+||.+..|..|++++...--.. .
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45678999999999999999876544 89999999999999999875310000 0
Q ss_pred ---CCC-------cceeEEEcCCCCCCCCCCceeEEEecchh--ccC--ChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 209 ---DMH-------KATNFFCVPLQDFTPETGRYDVIWVQWCI--GHL--TDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 209 ---~~~-------~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l--~~~--~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
.+. .|..+...|+.+ .....||+|+|..+- -|+ .|+.+..+|+++.++|.|||+|++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 000 011111222322 234589999976543 244 455699999999999999999988
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.8e-10 Score=104.11 Aligned_cols=103 Identities=19% Similarity=0.172 Sum_probs=78.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 230 (284)
..++.+|||+|||+|.++..++... .+|+|+|+|+.|++.|++++...+. .+++++++|+.+.. +.+++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhhhhhhhhcCC
Confidence 4566899999999999999888665 5799999999999999999876543 36899999986532 33467
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
||+|++...-.. ....++.+.+ ++|++.++++-|
T Consensus 368 fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 368 FDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEeC
Confidence 999998765332 2245555555 699999999854
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-10 Score=107.37 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=81.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCC-CCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
+++.+|||||||+|..+..+++... .+++++|+++++++.++++..-..... ....++++++..|..++. ..+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999998886543 589999999999999998432111100 001357889999987642 2346899
Q ss_pred EEEecchhccCChh---hHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDD---DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~---~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++.......+.. --.++++.+.+.|||||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99997543322211 0236899999999999999885
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-09 Score=84.08 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
..++.+.....+. +..+.-|||+|.|||.++..+++++.. .+++++.|+.+.....+.+.. +++
T Consensus 33 Ss~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-----------~~i 98 (194)
T COG3963 33 SSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-----------VNI 98 (194)
T ss_pred cHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-----------ccc
Confidence 3444444433333 677889999999999999999998776 899999999999999998765 456
Q ss_pred EEcCCCCCC-----CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 217 FCVPLQDFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 217 ~~~d~~~~~-----~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.+|..++. .....||.|+|.-.+-.++.....++++.+...|.+||.++-..
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 777776654 34467999999999999988788899999999999999888754
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-10 Score=99.17 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=84.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
-++..|||+|||||.++...++.|..+|++||.|. +.+.|++.+..+++ ...++++.+.+++..+|..+.|+|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~-----~~ii~vi~gkvEdi~LP~eKVDiIv 132 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGL-----EDVITVIKGKVEDIELPVEKVDIIV 132 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCc-----cceEEEeecceEEEecCccceeEEe
Confidence 35789999999999999988888888999999876 55999999888776 3568899998888766667999999
Q ss_pred ecchhccCChh-hHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~~~~~~-~~~~~l~~~~r~LkpGG~lii 267 (284)
+-|.-..+--+ -+..++-.=-+.|+|||.++=
T Consensus 133 SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 133 SEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 98865544322 355666666789999998753
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=110.26 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=80.2
Q ss_pred CceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCC----------CCCCCcceeEEEcCCCCCCC
Q 023288 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM----------APDMHKATNFFCVPLQDFTP 226 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~----------~~~~~~~~~~~~~d~~~~~~ 226 (284)
+.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...++. +.....+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999987765 37999999999999999998764331 00112468999999876542
Q ss_pred C-CCceeEEEecchhc--------------cCC------------------hhh----HHHHHHHHHhcCCCCcEEEE
Q 023288 227 E-TGRYDVIWVQWCIG--------------HLT------------------DDD----FVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 227 ~-~~~fD~Iv~~~~l~--------------~~~------------------~~~----~~~~l~~~~r~LkpGG~lii 267 (284)
. ..+||+||++-..- |-| +++ ...++.++.++|+|||.+++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 2 13699999874310 100 012 36778888899999998887
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=92.04 Aligned_cols=102 Identities=22% Similarity=0.234 Sum_probs=86.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|+|.|.|+|.++..|+....+ +|+.+|+-+.+.+.|++++...++ ..++++...|+.+...++ .||
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~~~~~~~-~vD 165 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVREGIDEE-DVD 165 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEecccccccccc-ccC
Confidence 678999999999999999998864333 899999999999999999988765 345888889998877665 899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+.-.. +.-.++..+.++|+|||.+++.-
T Consensus 166 av~LDmp-------~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 166 AVFLDLP-------DPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred EEEEcCC-------ChHHHHHHHHHHhCCCcEEEEEc
Confidence 9987543 55689999999999999999853
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.8e-10 Score=92.64 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=79.9
Q ss_pred ceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeEE
Q 023288 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVI 234 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~I 234 (284)
..+||||||.|.+...++...+. .++|+|++...+..+.+++...+ ..|+.++++|+..+- ++++++|.|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~------l~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG------LKNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT------TSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc------ccceEEEEccHHHHHhhcccCCchheE
Confidence 38999999999999999988877 89999999999999988876654 368999999988732 456899999
Q ss_pred EecchhccCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.++.=-+..... -..++..++++|+|||.|.+.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 9876543332111 357999999999999999886
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.1e-10 Score=89.88 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=65.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.-.+.+|+|+|||||.++...+..++..|+++|+.+++++.++++.... ..+++|+++|+.++. +.||.|
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~~~~---~~~dtv 112 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVSDFR---GKFDTV 112 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchhhcC---CccceE
Confidence 3456789999999999999888788889999999999999999998762 356999999999876 678999
Q ss_pred Eecchh
Q 023288 235 WVQWCI 240 (284)
Q Consensus 235 v~~~~l 240 (284)
+++..+
T Consensus 113 imNPPF 118 (198)
T COG2263 113 IMNPPF 118 (198)
T ss_pred EECCCC
Confidence 988554
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=8e-10 Score=90.54 Aligned_cols=111 Identities=18% Similarity=0.109 Sum_probs=74.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 229 (284)
..++.+|||+|||+|..+..++.. +..+|+.+|.++ .++..+.++..++. ....++.+...+..+.. .+..
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccc
Confidence 456789999999999999977766 455899999999 99999998876431 11345777777775521 2346
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+||+|+++.++.. ++....+++.+.++|+|+|.++++-..
T Consensus 119 ~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 119 SFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 8999999999886 347889999999999999988877543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=92.55 Aligned_cols=116 Identities=21% Similarity=0.304 Sum_probs=86.9
Q ss_pred CCceEEEeeccccH----HHHHHHHhCC------CcEEEEeCCHHHHHHHHHHcCC---------------------CC-
Q 023288 157 QHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAP---------------------EN- 204 (284)
Q Consensus 157 ~~~~VLDiGcGtG~----~s~~l~~~~~------~~v~gvD~S~~~l~~ar~~~~~---------------------~~- 204 (284)
...+|+-.||+||. ++..+.+.+. -+|+|+|+|..+|+.|+.-.=. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999994 3343333331 2799999999999999852211 01
Q ss_pred CC-CCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE--eccC
Q 023288 205 HM-APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (284)
Q Consensus 205 ~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (284)
+. .......+.|...|+.+-++..+.||+|+|.+|+.++..+....+++.++..|+|||.|++. |.+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~ 246 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP 246 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence 10 12223467888888877663447899999999999999888999999999999999999996 5544
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=97.77 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=76.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...++ .+++|+++|+.++.. ..+.||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 45799999999999999988765 5799999999999999999876543 468999999987642 235799999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+...-..+. ..+++ ....++|++.++++-+
T Consensus 246 ~dPPr~G~~----~~~~~-~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNPPRRGIG----KELCD-YLSQMAPRFILYSSCN 275 (315)
T ss_pred ECCCCCCcc----HHHHH-HHHHcCCCeEEEEECC
Confidence 885522222 12333 3344788888888754
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=87.21 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=64.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++.. .+|+++|+++.|++.+++++.. ..+++++++|+.+++++ .||.|
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEE
Confidence 4567899999999999999998774 4699999999999999998754 24689999999887755 48999
Q ss_pred Eecchhcc
Q 023288 235 WVQWCIGH 242 (284)
Q Consensus 235 v~~~~l~~ 242 (284)
+++...+.
T Consensus 96 v~NlPy~i 103 (258)
T PRK14896 96 VSNLPYQI 103 (258)
T ss_pred EEcCCccc
Confidence 99877553
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.9e-09 Score=94.79 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=77.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++.++ .+|+|+|+++.+++.|+++++..+. .+++|+++|+.++.. ...+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 45689999999999999888665 5799999999999999999876543 368999999876432 124699999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+.-.-..+. ..+++.+. .++|++.++++-+
T Consensus 306 ~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 306 VNPPRRGIG----KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ECCCCCCCc----HHHHHHHH-hcCCCeEEEEEeC
Confidence 987644333 24555554 4799999998754
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.9e-09 Score=96.69 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=77.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 230 (284)
..++.+|||+|||+|.++..++.. ..+|+|+|+|+.|++.|++++...+. .+++++.+|+.++ ...+++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcCCC
Confidence 345679999999999999988755 45799999999999999999876543 4689999998653 123457
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
||+|++...-..+. ..+++.+.+ ++|++.++++-
T Consensus 363 ~D~vi~dPPr~G~~----~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 363 PDVLLLDPPRKGCA----AEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCEEEECcCCCCCC----HHHHHHHHh-cCCCEEEEEcC
Confidence 99999765522211 255665554 89999888863
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=87.13 Aligned_cols=110 Identities=22% Similarity=0.251 Sum_probs=78.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-----CCCCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-----FTPETG 229 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~ 229 (284)
.++..|||+|||+|.++..++...+. .|+++|.|+.++..|.+++...++. ..+..+..+++. .+...+
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-----g~i~v~~~~me~d~~~~~~l~~~ 221 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-----GRIEVIHNIMESDASDEHPLLEG 221 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-----CceEEEecccccccccccccccC
Confidence 34558999999999999999876555 8999999999999999998876552 344555443332 123458
Q ss_pred ceeEEEecchhccCCh------------------------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCIGHLTD------------------------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~------------------------~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+|+++++-..-.-.+ +.+..++.-+.|.|+|||.+.+.-+
T Consensus 222 ~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 222 KIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 9999998843211000 0245567778899999999988644
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-09 Score=100.60 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=72.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcE--EEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEV--DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v--~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.-..+||+|||+|.++.+|+.++...+ .--|..+.+++.|-++--. .-+-...-..+|+++++||+|
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvp-----------a~~~~~~s~rLPfp~~~fDmv 185 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVP-----------AMIGVLGSQRLPFPSNAFDMV 185 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcc-----------hhhhhhccccccCCccchhhh
Confidence 344789999999999999998866521 1225555667666555211 111122346789999999999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.|+.++......+ ..+|-++.|+|||||+|+++-.
T Consensus 186 Hcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 186 HCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hcccccccchhcc-cceeehhhhhhccCceEEecCC
Confidence 9999876554333 3588999999999999999743
|
; GO: 0008168 methyltransferase activity |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.1e-09 Score=88.52 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=85.2
Q ss_pred ceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeEE
Q 023288 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVI 234 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~I 234 (284)
..+||||||.|.+...++...+. .++|||+....+..|-+++...++ .|+.+++.|+..+- +++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 57999999999999999988887 899999999999999998877653 28999999987652 455699999
Q ss_pred EecchhccCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.++.=-|..... ...+++.+.+.|+|||.|.+.
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 9887643332111 357999999999999999996
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-08 Score=88.35 Aligned_cols=76 Identities=16% Similarity=0.074 Sum_probs=62.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++..+. +|+++|+++.|++.+++++.. .+++++++|+.++++++-.+|.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCCHHHcCcceE
Confidence 45678999999999999999997765 799999999999999987642 46889999999887653225888
Q ss_pred Eecchh
Q 023288 235 WVQWCI 240 (284)
Q Consensus 235 v~~~~l 240 (284)
+++...
T Consensus 110 v~NlPY 115 (272)
T PRK00274 110 VANLPY 115 (272)
T ss_pred EEeCCc
Confidence 887654
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=85.15 Aligned_cols=105 Identities=16% Similarity=0.034 Sum_probs=76.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-C-C-CCC-cee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-ETG-RYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-~~~-~fD 232 (284)
.+.+|||++||+|.++..++.++...|+++|.++.+++.+++++...+. ..++++++.|+.++ . . ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHHHHHHhhccCCCce
Confidence 4678999999999999999999887899999999999999999876543 23578898988543 1 1 122 478
Q ss_pred EEEecchhccCChhhHHHHHHHHH--hcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~--r~LkpGG~lii~e~ 270 (284)
+|+....+..- ....++..+. .+|+++|.+++ |+
T Consensus 124 vv~~DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~-E~ 159 (189)
T TIGR00095 124 VIYLDPPFFNG---ALQALLELCENNWILEDTVLIVV-EE 159 (189)
T ss_pred EEEECcCCCCC---cHHHHHHHHHHCCCCCCCeEEEE-Ee
Confidence 88877665431 2334444443 46888886665 44
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.1e-08 Score=84.92 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=91.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (284)
...+.+||||.||.|+.....+..... ++...|+|+..++..++.++..|+ ...++|.+.|+.+.. .-+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----EDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----ccceEEEecCCCCHhHhhccC
Confidence 357789999999999998888876553 899999999999999999998877 344589999876642 112
Q ss_pred CceeEEEecchhccCChhh-HHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~lii~e 269 (284)
-..++++.+..++.|++.+ +...++-+.+.+.|||+++.+-
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 3579999999999999866 4557999999999999999873
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.3e-09 Score=97.08 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=74.1
Q ss_pred CceEEEeeccccHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~-----~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
+..|||+|||+|.++...++.+ ..+|++|+-|+.++...+++....++ ..+++++.+|++++..+ .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccCCCCC-Ccee
Confidence 5789999999999988766544 34899999999888777666444433 46799999999999866 4999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
+||+-+.=.....+-....+..+.+.|||||.++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9998665333333346678889999999998765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=87.08 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=61.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee--
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD-- 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD-- 232 (284)
..++.+|||||||+|.++..+++.+. .|+++|+++.|++.+++++.. ..+++++.+|+.+++++ +||
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCc
Confidence 45678999999999999999987765 599999999999999988753 25688999999887754 566
Q ss_pred -EEEecchhc
Q 023288 233 -VIWVQWCIG 241 (284)
Q Consensus 233 -~Iv~~~~l~ 241 (284)
+|+++..++
T Consensus 96 ~~vvsNlPy~ 105 (253)
T TIGR00755 96 LKVVSNLPYN 105 (253)
T ss_pred ceEEEcCChh
Confidence 777766544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-08 Score=90.30 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=61.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCC-CCCCCCCCcceeEEE-cCCCCCC----CCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFC-VPLQDFT----PETG 229 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~----~~~~ 229 (284)
.+.+|||||||+|.+...++.+.+. +++|+|+++.+++.|++++... ++ ..++++.. .+..++. .+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhhhhhcccccCC
Confidence 5689999999999888867665433 7999999999999999999875 44 34566653 3332221 2356
Q ss_pred ceeEEEecchhccCC
Q 023288 230 RYDVIWVQWCIGHLT 244 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~ 244 (284)
.||+|+|+-.++--.
T Consensus 189 ~fDlivcNPPf~~s~ 203 (321)
T PRK11727 189 RFDATLCNPPFHASA 203 (321)
T ss_pred ceEEEEeCCCCcCcc
Confidence 899999999877544
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-08 Score=87.70 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=78.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC---CC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~ 229 (284)
..++.+|||.|.|+|.++..|++...+ +|+.+|+.+...+.|++++...++ ..++++...|+.+..+. +.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecceecccccccccC
Confidence 678999999999999999999865433 899999999999999999988776 46899999998653332 35
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcC-CCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~L-kpGG~lii~e 269 (284)
.||.|+.-.. +.-.++..+.++| ||||.+++--
T Consensus 113 ~~DavfLDlp-------~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 113 DFDAVFLDLP-------DPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp SEEEEEEESS-------SGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cccEEEEeCC-------CHHHHHHHHHHHHhcCCceEEEEC
Confidence 7999886543 3337899999999 8999998853
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.9e-08 Score=74.94 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=70.3
Q ss_pred CCCceEEEeeccccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeE
Q 023288 156 NQHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~ 233 (284)
.++.+|||||||+|. ++..|.+.+. +|+++|+++..++.++++. ++++.+|+.+..++ -..+|+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~-------------~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG-------------LNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC-------------CeEEECcCCCCCHHHHhcCCE
Confidence 356789999999996 8877775555 5999999999999998763 46888999875533 357999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|++... +.++...+.++++.+. .-++|.-
T Consensus 81 iysirp-----p~el~~~~~~la~~~~--~~~~i~~ 109 (134)
T PRK04148 81 IYSIRP-----PRDLQPFILELAKKIN--VPLIIKP 109 (134)
T ss_pred EEEeCC-----CHHHHHHHHHHHHHcC--CCEEEEc
Confidence 998876 4577777777777554 5566653
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=85.48 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=61.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHH-HHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~-ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||+|||||.++..+++.+..+|+++|+++.|+.. .++...-..+. ..|++ ..+.+++..+-..||++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~----~~ni~--~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLE----RTNIR--YVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEee----cCCcc--cCCHhHcCCCceeeeEE
Confidence 3567899999999999999998877789999999988876 33321100000 11222 12222222222468877
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+++.. ..+..+.+.|+| |.+++
T Consensus 148 fiS~~----------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 148 FISLI----------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred EeehH----------hHHHHHHHHhCc-CeEEE
Confidence 77665 346778888999 76655
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=86.87 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=84.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.-.+..|||+|||.|.++...+..+..+|++|+.| +|.+.|++..+.+.+ ..++.++.+-+++..++ ++.|+|
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~-----~~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL-----ADRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc-----cceEEEccCccccccCc-hhccEE
Confidence 34567899999999999998888888899999976 699999999887655 57889999999988776 589999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+-..-..+-.+......-.+++.|||.|.++=+
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 9865433333344444555567999999987643
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-08 Score=86.01 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=78.8
Q ss_pred CCCceEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD 232 (284)
-.+.+|||+|||+|..+..+..- ...+++++|.|+.|++.++..+...... ...........+ .++ ...|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-----~~~~~~~~~~~~~~~~--~~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-----RNAEWRRVLYRDFLPF--PPDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-----ccchhhhhhhcccccC--CCCc
Confidence 35679999999999877655432 2338999999999999999887653210 111111111111 112 2349
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCc
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (284)
+|+++++|..++......+++++.+.+.+ .|+++|.-.+.|+
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 99999999999987788889988888776 9999999887775
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.3e-08 Score=87.15 Aligned_cols=110 Identities=19% Similarity=0.250 Sum_probs=79.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
..+.+||.||+|.|..+..+++.. ..+++.||+++.+++.|++.+...+- ....++++++..|...+- ...++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccE
Confidence 356799999999999999888643 44899999999999999998864211 011467889999887653 23468999
Q ss_pred EEecchhccC---Chhh--HHHHHH-HHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHL---TDDD--FVSFFK-RAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~---~~~~--~~~~l~-~~~r~LkpGG~lii~ 268 (284)
|++-.. ... +... -..+++ .+.+.|+|||++++.
T Consensus 180 Ii~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 997632 110 0000 236787 899999999998764
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-08 Score=84.70 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=64.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++.... +|+++|+++.|++.+++++...+. ..+++++++|+.+.+.+ .||.|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~~~~--~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKTEFP--YFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhhccc--ccCEE
Confidence 45678999999999999999987654 699999999999999998865332 25689999999876643 68999
Q ss_pred Eecchhcc
Q 023288 235 WVQWCIGH 242 (284)
Q Consensus 235 v~~~~l~~ 242 (284)
+++...+.
T Consensus 106 vaNlPY~I 113 (294)
T PTZ00338 106 VANVPYQI 113 (294)
T ss_pred EecCCccc
Confidence 98765543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.2e-08 Score=79.05 Aligned_cols=111 Identities=22% Similarity=0.194 Sum_probs=78.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-c---------EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-E---------VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~---------v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (284)
..++..|||--||+|.+....+..... . +.|+|+++.+++.|++++...+. ...+.+.+.|+.++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDAREL 100 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhhc
Confidence 457789999999999999876654333 2 78999999999999999987655 35688999999999
Q ss_pred CCCCCceeEEEecchhccC-Ch-hh----HHHHHHHHHhcCCCCcEEEEEec
Q 023288 225 TPETGRYDVIWVQWCIGHL-TD-DD----FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 225 ~~~~~~fD~Iv~~~~l~~~-~~-~~----~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++.++++|+|+++..+..- .. .+ ...+++++.++|++...+++.++
T Consensus 101 ~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~ 152 (179)
T PF01170_consen 101 PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN 152 (179)
T ss_dssp GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC
T ss_pred ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 8667899999998765532 21 11 45678999999999656666543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-08 Score=89.38 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=88.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
++.+|||+=|=||.++...+..+..+|+.||.|...|+.|++++.-+++. ...+.|+++|+-++- -...+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCccc
Confidence 47899999999999999888778878999999999999999999987763 355789999987653 2234899
Q ss_pred EEEecc-hhccCC------hhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 233 VIWVQW-CIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~-~l~~~~------~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|++-. .+.--+ ..+...++..+.++|+|||.++++-+.
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 999643 121111 125778999999999999999998653
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-08 Score=91.74 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=93.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++..++|+|||.|....++..-....++|+|.++..+..+.......++ .....+..+|+...+++++.||.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----DNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----hhhcceehhhhhcCCCCccccCcEE
Confidence 45568999999999999988765556899999999999988877665444 2334567789988899999999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+..+.+|.+ +...+++++.|+++|||+++..|.+...
T Consensus 184 ~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 184 FLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTA 220 (364)
T ss_pred EEeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHhh
Confidence 999999999 7779999999999999999998876443
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-08 Score=78.10 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=66.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
-.+.+++|+|||.|.++....-.....|.|+|+.|+.++.++++.... ..++++.++|+.++.+..+.||.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEE
Confidence 467899999999999997655455558999999999999999998764 4567999999999887779999999
Q ss_pred ecchhc
Q 023288 236 VQWCIG 241 (284)
Q Consensus 236 ~~~~l~ 241 (284)
.+..+.
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 887765
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=81.93 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=82.6
Q ss_pred CceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv 235 (284)
+.+||-||.|.|..++.+++.. ..+++.||+.+..++.+++.+........ .++++.+..|..++-- ...+||+|+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3699999999999999998654 34899999999999999999876542222 4778888888877642 223899999
Q ss_pred ecchhccCCh-hh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTD-DD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~-~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
+-..=. ..+ +. -..+++.|++.|+|+|+++..
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 765422 111 01 247999999999999999886
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=83.01 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=85.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD~ 233 (284)
..++..|||-=||||.+.....-.+. .++|+|++..|++-|+.|+...+. ....+... |+..+++++.+||.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI------EDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc------CceeEEEecccccCCCCCCccce
Confidence 67888999999999999997664455 599999999999999999987643 23334444 99999988778999
Q ss_pred EEecchhccCC-------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~-------~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|++-....--+ ++=...+++.+.++|++||++++.-.
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99654322211 12267899999999999999999754
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.8e-07 Score=75.71 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
..++..+++ .-.+.++||||.=||..+..++...+. +|+++|+++...+.+.+..+..|. ...+++
T Consensus 62 g~fl~~li~-------~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~ 129 (237)
T KOG1663|consen 62 GQFLQMLIR-------LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITF 129 (237)
T ss_pred HHHHHHHHH-------HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeee
Confidence 345555554 235679999999999999888876555 899999999999999888877665 567899
Q ss_pred EEcCCCCC------CCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCCC
Q 023288 217 FCVPLQDF------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSH 281 (284)
Q Consensus 217 ~~~d~~~~------~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~~ 281 (284)
++++..+. ..+.++||++|.-.- ..+....+.++.+++|+||+|++ ||+.-.|.+.+|.
T Consensus 130 i~g~a~esLd~l~~~~~~~tfDfaFvDad-----K~nY~~y~e~~l~Llr~GGvi~~-DNvl~~G~v~~p~ 194 (237)
T KOG1663|consen 130 IEGPALESLDELLADGESGTFDFAFVDAD-----KDNYSNYYERLLRLLRVGGVIVV-DNVLWPGVVADPD 194 (237)
T ss_pred eecchhhhHHHHHhcCCCCceeEEEEccc-----hHHHHHHHHHHHhhcccccEEEE-eccccCCcccCcc
Confidence 99876542 134679999985332 23455889999999999997766 8866656665553
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=82.40 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=75.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.+.+.+||=||.|.|..++.+++ +..+|+.||+.+.+++.+++.+..... ..-.++++++.. +.+ ...++||+|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLk-h~~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFK-YDTHVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHC-cCCeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 45678999999999999999994 455899999999999999997664221 111345555542 211 123689999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+-..+ + ..+++.+.+.|+|||.++..
T Consensus 144 IvDs~~---~----~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 144 ICLQEP---D----IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEcCCC---C----hHHHHHHHHhcCCCcEEEEC
Confidence 977541 1 37889999999999999885
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=90.32 Aligned_cols=107 Identities=16% Similarity=0.057 Sum_probs=83.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD 232 (284)
.....+||||||.|.++..++...+. .++|+|++...+..+.++....++ .|+.+++.|+..+. ++++++|
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCccccc
Confidence 35678999999999999999988776 899999999988888777655443 56777777764332 5678999
Q ss_pred EEEecchhccCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|+.++.=-|..... -..+++.++++|||||.|.+.
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 999887644432111 357999999999999999886
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-08 Score=81.59 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=76.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
++.++||+=||+|.++...++++..+|+.||.++..+...+++++..+. ...+..++.|....- ....+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHHHHhhcccCCCce
Confidence 5789999999999999999999999999999999999999999876543 235778888854321 1347899
Q ss_pred EEEecchhccCChhhHHHHHHHHH--hcCCCCcEEEEEeccC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKENIA 272 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~--r~LkpGG~lii~e~~~ 272 (284)
+|++......-. ....++..+. .+|+++|.+++ |+..
T Consensus 117 iIflDPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~-E~~~ 155 (183)
T PF03602_consen 117 IIFLDPPYAKGL--YYEELLELLAENNLLNEDGLIII-EHSK 155 (183)
T ss_dssp EEEE--STTSCH--HHHHHHHHHHHTTSEEEEEEEEE-EEET
T ss_pred EEEECCCcccch--HHHHHHHHHHHCCCCCCCEEEEE-EecC
Confidence 999987655422 1356777776 78999997776 5433
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.9e-07 Score=80.26 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=82.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TP 226 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-----~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~ 226 (284)
.++..|+|+|||.|.-+..|++.. ...++++|+|..+|+.+.+++....+ ....+.-+++|..+. +.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~----p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF----SHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC----CCeEEEEEEecHHHHHhhccc
Confidence 356689999999999888777643 22699999999999999998872211 122344477777552 11
Q ss_pred --CCCceeEEEe-cchhccCChhhHHHHHHHHHh-cCCCCcEEEEE-ecc
Q 023288 227 --ETGRYDVIWV-QWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK-ENI 271 (284)
Q Consensus 227 --~~~~fD~Iv~-~~~l~~~~~~~~~~~l~~~~r-~LkpGG~lii~-e~~ 271 (284)
......+|+. ..++.++++++...+|+++++ .|+|||.|++. |.+
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 1223566655 458999999999999999999 99999999986 544
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=86.17 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=77.0
Q ss_pred CceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+.+|||++||+|..+..++.... .+|+++|+++.+++.++++++.+++ .++++.+.|+..+......||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhhcCCCCEEEE
Confidence 45899999999999999876543 4799999999999999999876553 2456888888664321357999998
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.-. . ....++..+.+.+++||.++++
T Consensus 132 DP~--G----s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DPF--G----SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCC--C----CcHHHHHHHHHHhcCCCEEEEE
Confidence 642 2 2236888877889999999998
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-07 Score=84.89 Aligned_cols=98 Identities=19% Similarity=0.153 Sum_probs=71.6
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CC---------
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE--------- 227 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~--------- 227 (284)
.+|||++||+|.++..++ +.+.+|+++|+|+.+++.+++++...++ .+++++.+|+.++. ..
T Consensus 208 ~~vLDl~~G~G~~sl~la-~~~~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALA-RNFRRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHH-hhCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhcccccccc
Confidence 579999999999999766 4556899999999999999999876543 36889999986631 10
Q ss_pred -----CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 -----~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
..+||+|+..-.-..+. ..+++.+.+ |++.++++-+
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G~~----~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAGLD----DETLKLVQA---YERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCCCCc----HHHHHHHHc---cCCEEEEEeC
Confidence 12589999876632222 245555544 7888888744
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=85.39 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=70.8
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-----------
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------- 227 (284)
.+|||++||+|.++..++ +++.+|+|+|+|+.+++.|++++...++ .+++++++|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la-~~~~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALA-QNFRRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHH-HhCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 479999999999999776 4456799999999999999999876543 3688999988764210
Q ss_pred -----CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 -----~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
...||+|+..-.=..+ ...+++.+.+ |++.++++-+
T Consensus 272 ~~~~~~~~~d~v~lDPPR~G~----~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRAGL----DPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCCCCCC----cHHHHHHHHc---CCcEEEEEcC
Confidence 1137999986652221 2245555543 7888888743
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.3e-08 Score=84.26 Aligned_cols=110 Identities=21% Similarity=0.226 Sum_probs=79.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~ 233 (284)
++.+|||+=|=||.++...+..+..+|+.||.|..+++.+++++..+++. ..++++++.|+.++- -..++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 46799999999999999888777778999999999999999998876652 246889999886532 12468999
Q ss_pred EEecch-hcc--C-ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWC-IGH--L-TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~-l~~--~-~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
||+-.. +.- + -..+...++..+.++|+|||.+++.-+
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 996421 110 0 023577899999999999999887654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-07 Score=78.72 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=82.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC----C----------------------C-----
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP----E----------------------N----- 204 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~----~----------------------~----- 204 (284)
..+.+||--|||.|+++..++..++. +.|.|.|--|+-..+-.+.. . .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45679999999999999999999886 99999999997665442211 0 0
Q ss_pred ---CCCCCCCcceeEEEcCCCCCCCCC---CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 205 ---HMAPDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 205 ---~~~~~~~~~~~~~~~d~~~~~~~~---~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
........+.....+|+.++-.++ ++||+|+.++.+...+ ++...+..+.++|||||..+-.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWINF 201 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEec
Confidence 000111235666777877765444 7999999998887655 8999999999999999976653
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-06 Score=67.34 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=72.1
Q ss_pred EEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc-eeEEEcCCCC--CCCCC-CceeEE
Q 023288 161 ALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQD--FTPET-GRYDVI 234 (284)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~-~~~~~~d~~~--~~~~~-~~fD~I 234 (284)
++|+|||+|..+ .+..... ..++++|+++.++..++...... ... +.+...+... +++.. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-------GLGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-------CCCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999976 2332222 25899999999999965554221 111 5677777765 56665 489999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
.+....++.. ....+.++.+.|+|+|.+++.+....
T Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4444444444 56899999999999999999876543
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.8e-07 Score=72.02 Aligned_cols=104 Identities=16% Similarity=0.066 Sum_probs=76.2
Q ss_pred CceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
+.-+||||||+|..+..+++.... .+.++|++|..++..++.+..+ ..+++.++.|+..-- .+++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-------~~~~~~V~tdl~~~l-~~~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-------RVHIDVVRTDLLSGL-RNESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-------CCccceeehhHHhhh-ccCCccEEE
Confidence 567999999999999988875443 6899999999999988887664 234778888876533 237899998
Q ss_pred ecchhccCChh-------------------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~-------------------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+...--.+++ -...++..+-..|.|.|++++.-
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 76432221111 13466777778889999999863
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.9e-07 Score=83.15 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=82.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
+.++.+|||++||.|.-|..+++.... .|+++|+++.-++..++++...|+ .++.+...|...+. ...+.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 568889999999999999998876533 799999999999999999987664 45677778877653 223579
Q ss_pred eEEE----ecc--hhccCC-------hhh-------HHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIW----VQW--CIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv----~~~--~l~~~~-------~~~-------~~~~l~~~~r~LkpGG~lii~ 268 (284)
|.|+ |+. ++..-+ .++ ...+|.++.++|||||+|+.+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999 442 232211 111 267899999999999999775
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-07 Score=78.51 Aligned_cols=111 Identities=16% Similarity=0.067 Sum_probs=84.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD 232 (284)
+.++.+|||...|-|+.++..++++...|+-++.+|..++.|.-+-=..++ +...++++.+|..++ .+++.+||
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----FEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----cccccEEecccHHHHHhcCCccccc
Confidence 567899999999999999999999997899999999999988655322222 233678899998775 37788999
Q ss_pred EEEecch-hccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~-l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+--.. |.+...---..+.++++|+|||||.++-.-
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 9984321 222221123479999999999999998753
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-07 Score=77.01 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=71.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++..|+|+-||.|.++..++.. ....|+++|++|..++.+++++..+++ ...+..+++|..++.. .+.||.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG----TT-EEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHHhcC-ccccCE
Confidence 346789999999999999998863 344799999999999999999887655 3568889999988765 579999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
|++...-. -..++..+.+++++||.+-
T Consensus 173 vim~lp~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMNLPES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE--TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred EEECChHH------HHHHHHHHHHHhcCCcEEE
Confidence 99876522 1258888999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.8e-07 Score=72.74 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=77.3
Q ss_pred CCCceEEEeeccccHHHHHHHHh-CCC--cEEEEeCCHHHHHHHHHHcCCCCC----CCCCCCcceeEEEcCCCCCCCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR-YFN--EVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNFFCVPLQDFTPET 228 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~--~v~gvD~S~~~l~~ar~~~~~~~~----~~~~~~~~~~~~~~d~~~~~~~~ 228 (284)
.++.+.||+|.|+|+++..++.. +.. ..+|||.-++.++.+++++...-- ...-...+..++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 48899999999999999877643 222 359999999999999998764210 00001235678888988877777
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+||.|++...-. ..-+++...|+|||.+++-
T Consensus 161 a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccCcc--------ccHHHHHHhhccCCeEEEe
Confidence 8999999874422 4556777889999999884
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.3e-07 Score=72.90 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=75.7
Q ss_pred eEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
+++|||+|.|.-+..++-..+. +++.+|.+..-+...+......++ .|+++++..+++ .....+||+|++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc-cccCCCccEEEeeh
Confidence 8999999999999887766665 799999999987777766655544 578899998888 44457999999987
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+- .+..++.-+...|++||.+++.
T Consensus 124 v~------~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 VA------PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SS------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred hc------CHHHHHHHHHHhcCCCCEEEEE
Confidence 73 4568999999999999998885
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-07 Score=80.27 Aligned_cols=96 Identities=19% Similarity=0.152 Sum_probs=77.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+..++|+|||.|-.+. ..+ ..++|.|++...+..+++.-. .....+|+..+|+.+.+||.++
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~------------~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGG------------DNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCC------------ceeehhhhhcCCCCCCccccch
Confidence 46789999999997654 222 158999999999988875422 1467789999999999999999
Q ss_pred ecchhccCChhh-HHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~lii~ 268 (284)
+..++||+.... ...+++++.|.|+|||...+.
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999996444 677999999999999986664
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-07 Score=80.96 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCC-cee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETG-RYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~-~fD 232 (284)
+++.+||-||.|.|..+..+++.. ..+++.||+++.+++.|++.+...... ...++++++..|...+- -... +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence 467899999999999999888443 248999999999999999986532110 11457889999876542 1223 899
Q ss_pred EEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+.-..-...+... -..+++.+.+.|+|||.+++.-
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999643321111111 2479999999999999999864
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.5e-06 Score=72.00 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=64.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCC-ceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~fD~ 233 (284)
..++..|||||+|.|.+|..|+++... |+++++.+.+++..++++.. ..+++++.+|+...+++.- .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcCcchhhcCCCE
Confidence 456789999999999999999977665 99999999999999999864 4679999999998887632 5788
Q ss_pred EEecchh
Q 023288 234 IWVQWCI 240 (284)
Q Consensus 234 Iv~~~~l 240 (284)
|+++-..
T Consensus 99 vVaNlPY 105 (259)
T COG0030 99 VVANLPY 105 (259)
T ss_pred EEEcCCC
Confidence 8877554
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=76.23 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=91.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||.=||.|.++..++..+...|+++|++|..++..++++..++. ...+..+++|..+.....+.||-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHHhhhccccCCEEE
Confidence 35889999999999999999877776799999999999999999988765 3348899999998876657899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
+...- .-..++..+.+.+++||.+-+.+++..+.
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 98763 22368888888999999999999876554
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.2e-07 Score=77.90 Aligned_cols=118 Identities=17% Similarity=0.241 Sum_probs=78.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCC-CCCC---------------------CCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-MAPD---------------------MHK 212 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~-~~~~---------------------~~~ 212 (284)
..++.++||||||+-..-..-+.+.+.+++..|.++..++..++.+...+- .+.. ...
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 345779999999996654433446777999999999999988876654311 0000 011
Q ss_pred ce-eEEEcCCCCCC-CCC-----CceeEEEecchhccCC--hhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 213 AT-NFFCVPLQDFT-PET-----GRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 213 ~~-~~~~~d~~~~~-~~~-----~~fD~Iv~~~~l~~~~--~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.+ .++.+|+...+ +.+ .+||+|++.++++... .++...+++++.++|||||.|++.....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 22 35667887754 222 3599999999998764 3458889999999999999999986543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.4e-06 Score=69.08 Aligned_cols=107 Identities=16% Similarity=0.083 Sum_probs=80.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCC-CCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPE-TGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~-~~~fD 232 (284)
-.+.++||+=+|+|.++...++++...++.||.+...+...+++.+..++ ..+..++..|...+ ... .+.||
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHHHHHhcCCCCccc
Confidence 36789999999999999999999999999999999999999999876543 35677777777643 122 23599
Q ss_pred EEEecchhccCChhhHHHHHHH--HHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~--~~r~LkpGG~lii~ 268 (284)
+|+.-..++.-- -+....+.. -...|+|+|.+++-
T Consensus 117 lVflDPPy~~~l-~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 117 LVFLDPPYAKGL-LDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred EEEeCCCCccch-hhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 999988877211 011223333 45779999988884
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-06 Score=78.01 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=79.5
Q ss_pred CceEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023288 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~I 234 (284)
+.+|||+-||+|..+..++.+ +..+|+++|+++..++.++++++..+. .++.+.+.|+..+.. ....||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEE
Confidence 468999999999999999987 556899999999999999999876542 357788888776532 13579999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.... + ..+ ..++..+.+.+++||.++++
T Consensus 119 dlDP-f-Gs~----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-F-GTP----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-C-CCc----HHHHHHHHHhcccCCEEEEE
Confidence 9865 3 222 27899999999999999998
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.5e-06 Score=68.85 Aligned_cols=98 Identities=24% Similarity=0.262 Sum_probs=76.2
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+.+++|||+|.|.-+..++--.+. +|+.+|....-+...+......++ .|++++++.++++......||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccccccCcEEEe
Confidence 589999999999999877633333 699999998877777776666554 6789999999987643212999998
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
..+- .+..++.-+...+|+||.+++
T Consensus 142 RAva------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 142 RAVA------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ehcc------chHHHHHHHHHhcccCCcchh
Confidence 7762 556788889999999988653
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-06 Score=75.89 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=60.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCC-
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETG- 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~- 229 (284)
+.++..++|++||.|..+..+++... .+|+|+|.++.|++.+++++.. ..++.+++.++.++. .+.+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCC
Confidence 45678999999999999999998764 3799999999999999988754 246889999888763 2212
Q ss_pred -ceeEEEec
Q 023288 230 -RYDVIWVQ 237 (284)
Q Consensus 230 -~fD~Iv~~ 237 (284)
+||.|++.
T Consensus 89 ~~vDgIl~D 97 (296)
T PRK00050 89 GKVDGILLD 97 (296)
T ss_pred CccCEEEEC
Confidence 79999865
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.6e-06 Score=70.51 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=64.4
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
...++..|||+|.|||.+|..+++.+.. |+++++.+.|+....++...... ....+++.+|+...+.+ .||.
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~-----~~kLqV~~gD~lK~d~P--~fd~ 126 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHGDFLKTDLP--RFDG 126 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCc-----cceeeEEecccccCCCc--ccce
Confidence 3678899999999999999999977665 99999999999999999876432 35678899998876654 6999
Q ss_pred EEecc
Q 023288 234 IWVQW 238 (284)
Q Consensus 234 Iv~~~ 238 (284)
+|++.
T Consensus 127 cVsNl 131 (315)
T KOG0820|consen 127 CVSNL 131 (315)
T ss_pred eeccC
Confidence 99753
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3e-07 Score=75.57 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=73.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
...+.++||+|+|.|.++..++ +.+.+|.+++.|..|..+.+++.- + +....++.-.+-+||+|
T Consensus 110 ~~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~y-----------n----Vl~~~ew~~t~~k~dli 173 (288)
T KOG3987|consen 110 GQEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKNY-----------N----VLTEIEWLQTDVKLDLI 173 (288)
T ss_pred CCCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcCC-----------c----eeeehhhhhcCceeehH
Confidence 4567899999999999999765 777789999999999998876521 1 12222222223579999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCC-CcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP-GGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~Lkp-GG~lii~ 268 (284)
.|-+.+.-.- +.-.+++.++.+|+| +|.++++
T Consensus 174 ~clNlLDRc~--~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 174 LCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEE
Confidence 9999987666 445899999999999 8988875
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.1e-06 Score=68.64 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=83.1
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
..+.|+|+|+|.++. +++....+|++++.+|.-.+.|.+++.-.| ..+++.+.+|+.++.++ ..|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gDA~~y~fe--~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGDARDYDFE--NADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCC------CcceEEEeccccccccc--ccceeHHHH
Confidence 678999999999999 565767799999999999999999976554 36899999999998884 579999865
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.=..+-.+....+++.+...||-++.++=.+
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCccccHH
Confidence 4333444566788999999999999887644
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=74.81 Aligned_cols=105 Identities=16% Similarity=0.285 Sum_probs=88.4
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
.++|-+|||.-.++..+.+.++..|+-+|+|+..++.+..+.... ..-..+...|+..+.+++.+||+|+.-+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecchhccCCCcceeEEEecC
Confidence 489999999999999999999999999999999999888776421 3557889999999999999999999999
Q ss_pred hhccCChhh--------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 239 CIGHLTDDD--------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 239 ~l~~~~~~~--------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.++++-.++ ....+.+++|+|+|||+++..-.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 988873222 24568899999999999777644
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=69.15 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=80.4
Q ss_pred ccccHHHHHHHHHhhcCCccCCCCceEEEeeccc--cHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCC
Q 023288 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDM 210 (284)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGt--G~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~ 210 (284)
....+.|+.+.+..+..+ ..-...||||||- -...-.+++...+ +|+.||..|-.+..++..+...
T Consensus 49 ar~nR~Fl~RaVr~la~~---~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------- 118 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEE---AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------- 118 (267)
T ss_dssp HHHHHHHHHHHHHHHHCT---T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------
T ss_pred HHHHHHHHHHHHHHHHHh---cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-------
Confidence 445567777776655442 1234799999993 3344446554333 8999999999999999998763
Q ss_pred Ccc--eeEEEcCCCCCC-----------CCCCceeEEEecchhccCCh-hhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 211 HKA--TNFFCVPLQDFT-----------PETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 211 ~~~--~~~~~~d~~~~~-----------~~~~~fD~Iv~~~~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.+ ..++.+|+.+.. +.-..-=.|++..++||+++ ++...+++.+...|.||.+|+|+-.+.
T Consensus 119 -~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 119 -PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp -TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred -CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 34 789999987632 11122335778899999987 678999999999999999999986543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.4e-06 Score=73.71 Aligned_cols=110 Identities=18% Similarity=0.091 Sum_probs=69.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHh--------CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~--------~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (284)
..++.+|+|..||+|.+...+... ...+++|+|+++.++..|+-++.-.+.. ..+..+...|....+.
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQGDSLENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEES-TTTSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----cccccccccccccccc
Confidence 567779999999999998887753 2237999999999999988765322210 1223466777544332
Q ss_pred -C-CCceeEEEecchhccC--Chh-----------------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 227 -E-TGRYDVIWVQWCIGHL--TDD-----------------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 -~-~~~fD~Iv~~~~l~~~--~~~-----------------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. ...||+|+++..+... ... .-..++..+.+.|++||++.+.
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 2 4689999988654432 100 1125889999999999987665
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=67.51 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=72.7
Q ss_pred cHHHHHHHHHhhcCC-ccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 138 SEAFLQMLLSDRFPN-ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~-~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
+..++..++...... .......++|||||=+......- ...+ .|+.||+++ ..-.+
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns---------------------~~~~I 87 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-SGWF-DVTRIDLNS---------------------QHPGI 87 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccc-cCce-eeEEeecCC---------------------CCCCc
Confidence 344555555544332 11223479999999755443321 1344 499999975 11234
Q ss_pred EEcCCCCCCC---CCCceeEEEecchhccCChhh-HHHHHHHHHhcCCCCcE-----EEEE
Q 023288 217 FCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGF-----FVLK 268 (284)
Q Consensus 217 ~~~d~~~~~~---~~~~fD~Iv~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~-----lii~ 268 (284)
.+.|+-+.|. +.++||+|.++.||.++|++. .-..++++.+.|+|+|. |+++
T Consensus 88 ~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 88 LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred eeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 5666666654 357999999999999998544 66799999999999999 7776
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-06 Score=69.69 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=52.9
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc-eeEEEe
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR-YDVIWV 236 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-fD~Iv~ 236 (284)
.|+|+.||.|..+..+++. +.+|+++|+++..++.|+.++.-.|. ..+++++++|+.++. ..... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6999999999999999855 66799999999999999999887664 468999999987653 12122 899996
Q ss_pred c
Q 023288 237 Q 237 (284)
Q Consensus 237 ~ 237 (284)
+
T Consensus 76 S 76 (163)
T PF09445_consen 76 S 76 (163)
T ss_dssp -
T ss_pred C
Confidence 5
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=79.11 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=78.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-------------------------------------------CCcEEEEeCCHHH
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHF 192 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-------------------------------------------~~~v~gvD~S~~~ 192 (284)
.++..++|.+||+|.+.+..+... ...++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 356789999999999988765420 0158999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEEEecchhccC-C-hhhHHHHHHHHHhcCC---CCcEE
Q 023288 193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGHL-T-DDDFVSFFKRAKVGLK---PGGFF 265 (284)
Q Consensus 193 l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~Iv~~~~l~~~-~-~~~~~~~l~~~~r~Lk---pGG~l 265 (284)
++.|++++...|+ ...+++.++|+.+++.+ .++||+|+++..+..- . ..++..+.+.+.+.+| ||+.+
T Consensus 269 v~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~ 343 (702)
T PRK11783 269 IQAARKNARRAGV-----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNA 343 (702)
T ss_pred HHHHHHHHHHcCC-----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeE
Confidence 9999999988765 34588999999887643 3579999999765322 1 2344555555555444 88877
Q ss_pred EEE
Q 023288 266 VLK 268 (284)
Q Consensus 266 ii~ 268 (284)
++.
T Consensus 344 ~ll 346 (702)
T PRK11783 344 ALF 346 (702)
T ss_pred EEE
Confidence 665
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.7e-07 Score=73.28 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=57.7
Q ss_pred CCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC------C--C
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------T--P 226 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~------~--~ 226 (284)
.+.+|||+||++|.++..++.+. ...|+|+|+.+. .. ..++.++++|+.+. . .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~-----------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP-----------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS------------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc-----------ccceeeeecccchhhHHHhhhhhc
Confidence 56899999999999999888776 348999999875 00 12233333333221 0 1
Q ss_pred --CCCceeEEEecchhccCCh---------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 --ETGRYDVIWVQWCIGHLTD---------DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 --~~~~fD~Iv~~~~l~~~~~---------~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
..+.||+|++-.+...... .-....+.-+...|+|||.+++.-
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1258999998773322211 113445556667899999988864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.2e-05 Score=73.08 Aligned_cols=104 Identities=22% Similarity=0.216 Sum_probs=80.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC---CCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~f 231 (284)
..++.++||+=||.|.++..++ ....+|+|+|+++++++.|+++++.++. .|++|..++.+++... ...+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHHhhhccccCCC
Confidence 4566799999999999999888 5555799999999999999999988764 5688999999887533 2478
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|.|+..-.=..+. . .+++.+.+ ++|-..++++-|
T Consensus 364 d~VvvDPPR~G~~--~--~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 364 DVVVVDPPRAGAD--R--EVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred CEEEECCCCCCCC--H--HHHHHHHh-cCCCcEEEEeCC
Confidence 9999765533333 1 45555543 578888888865
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=64.63 Aligned_cols=105 Identities=20% Similarity=0.181 Sum_probs=81.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (284)
.++.+||++|-|-|.....+-+.-+.+-+.++..|..+++.|...-.. ..++....+-.++. ..+++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------ccceEEEecchHhhhccccccCcce
Confidence 578999999999999988776666668899999999999998875432 34566666655553 255788999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+--..-.+- +++..+.+.+.|+|||+|++-+--
T Consensus 173 I~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 173 IYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eEeechhhHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence 9865443332 478889999999999999988753
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.8e-05 Score=67.10 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=69.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC---Cce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~f 231 (284)
..++..|||||+|+|.+|..++..+ .+++++|+++.+.+..++++.. ..+++++.+|+.++.... ...
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHhhcCCc
Confidence 4478899999999999999999777 6799999999999999998874 467999999999887543 456
Q ss_pred eEEEecchhccCChhhHHHHHHHHHh
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKV 257 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r 257 (284)
..|+++-.. +++ ..++.++..
T Consensus 99 ~~vv~NlPy-~is----~~il~~ll~ 119 (262)
T PF00398_consen 99 LLVVGNLPY-NIS----SPILRKLLE 119 (262)
T ss_dssp EEEEEEETG-TGH----HHHHHHHHH
T ss_pred eEEEEEecc-cch----HHHHHHHhh
Confidence 677777654 444 245555554
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-05 Score=64.87 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCCCceEEEeeccccHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHcC-------CCCCCCCCCCcceeEEEcCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLA-------PENHMAPDMHKATNFFCVPLQDFTP 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~-~~~~~v~gvD~S~~~l~~ar~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (284)
..++...+|||||.|......+. .++.+.+||++.+...+.|+.... ..+. ....+++..+|+.+.+.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~----~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK----RPGKVELIHGDFLDPDF 115 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-------EEEEECS-TTTHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc----ccccceeeccCccccHh
Confidence 56788999999999998776554 355579999999998887765322 1111 12457788888766431
Q ss_pred CC---CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 227 ET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 227 ~~---~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
.. ...|+|+++... + ++++...+.+....||||-+++-.....+..
T Consensus 116 ~~~~~s~AdvVf~Nn~~--F-~~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 116 VKDIWSDADVVFVNNTC--F-DPDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp HHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred HhhhhcCCCEEEEeccc--c-CHHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 10 247999998763 2 2466677788889999998877655544433
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=75.94 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=53.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCC---------CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC---
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--- 224 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~---------~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 224 (284)
...+|||.|||+|.+...++.... ..++|+|+++..+..++.++...+. ..+...+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeeccccccccc
Confidence 456999999999999998876432 2689999999999999988765331 1123333332211
Q ss_pred --CCCCCceeEEEecchhc
Q 023288 225 --TPETGRYDVIWVQWCIG 241 (284)
Q Consensus 225 --~~~~~~fD~Iv~~~~l~ 241 (284)
....+.||+|+++-...
T Consensus 105 ~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 105 NIESYLDLFDIVITNPPYG 123 (524)
T ss_pred ccccccCcccEEEeCCCcc
Confidence 11125899999886544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2e-05 Score=64.53 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=77.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.-.+.+|||+|+|+|..++..+..+...|+..|+.|......+-+.+.++ .++.+...|+.. ++..||+|
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang-------v~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG-------VSILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc-------ceeEEeeccccC---CCcceeEE
Confidence 34678999999999999998887888899999999988888888877654 457777777765 34689999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+...++..-+ .-..++....++...|-.+++-+.
T Consensus 147 LagDlfy~~~--~a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 147 LAGDLFYNHT--EADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred EeeceecCch--HHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999876544 344677744444444555555554
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.2e-06 Score=68.97 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
....|+|.-||.|..+..++..++. |+++|++|.-+..|+.+++-.|. ..+++|+++|+.++- +....+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~ld~~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFLDLASKLKADKIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecC-----CceeEEEechHHHHHHHHhhhhheee
Confidence 3467999999999999999977776 99999999999999999998877 468999999987642 3334577
Q ss_pred EEEecch
Q 023288 233 VIWVQWC 239 (284)
Q Consensus 233 ~Iv~~~~ 239 (284)
+|+.+..
T Consensus 168 ~vf~spp 174 (263)
T KOG2730|consen 168 CVFLSPP 174 (263)
T ss_pred eeecCCC
Confidence 8876544
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.1e-05 Score=59.10 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=66.3
Q ss_pred CCCCceEEEeeccccHHHHHHHH-----hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~-----~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (284)
..+..+|+|+|||.|.++..++. ....+|+++|.++..++.++++....+. ....+..+...+..+... ..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS---DLEKRLSFIQGDIADESS-SD 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc---hhhccchhhccchhhhcc-cC
Confidence 35678999999999999998886 4333899999999999999888765431 112345555555544322 34
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
..++++.-.+-..++ + .+++.+.+ |+-.+++
T Consensus 99 ~~~~~vgLHaCG~Ls--~--~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 99 PPDILVGLHACGDLS--D--RALRLFIR---PNARFLV 129 (141)
T ss_pred CCeEEEEeecccchH--H--HHHHHHHH---cCCCEEE
Confidence 678888655554444 2 34444444 4444443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0002 Score=64.84 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=82.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC----------------------------------------cEEEEeCCHHHHH
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN----------------------------------------EVDLLEPVSHFLD 194 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~----------------------------------------~v~gvD~S~~~l~ 194 (284)
-.++..++|-=||+|.+.+..+..... .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 345568999999999999887754421 2779999999999
Q ss_pred HHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhc-cCChhh-----HHHHHHHHHhcCCCCcEEEEE
Q 023288 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTDDD-----FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 195 ~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~-~~~~~~-----~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|+.++...|. ...+.|.++|+..+..+-..+|+|||+.... -+..+. ...+.+.+.+.++--+.++|+
T Consensus 269 ~Ak~NA~~AGv-----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 269 GAKANARAAGV-----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHhcCC-----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999988876 5679999999999875546899999996543 222221 234555666777777778776
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00026 Score=64.61 Aligned_cols=108 Identities=21% Similarity=0.174 Sum_probs=81.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (284)
+.++.+|||+.++.|.=|.++++.... .|+++|+|+.=++..+++++..|. .++.....|...++ ...
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEeccccccccccccc
Confidence 778899999999999999989876543 469999999999999999988765 44667777766543 222
Q ss_pred CceeEEEe------cchhccCC-------hhh-------HHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWV------QWCIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~------~~~l~~~~-------~~~-------~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.||.|+. .++++--| ..+ ...+|..+.+.|||||.|+.+
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 35999982 22332111 111 356899999999999999986
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.9e-05 Score=63.80 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=62.8
Q ss_pred EEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCceeEEEecc
Q 023288 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIWVQW 238 (284)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~Iv~~~ 238 (284)
|.||||-.|.+..+|++++.. .++++|+++.-++.|+++....++ ..++++..+|-.+ ++.. ...|.|+.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCcccccCCC-CCCCEEEEec
Confidence 689999999999999988776 799999999999999999988766 4678999998543 3322 2379998765
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+=.. -...++.+....++..-.|++
T Consensus 75 MGG~----lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 75 MGGE----LIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp E-HH----HHHHHHHHTGGGGTT--EEEE
T ss_pred CCHH----HHHHHHHhhHHHhccCCeEEE
Confidence 4222 233444444444444444444
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.2e-05 Score=67.47 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=53.1
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--------------
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------------- 225 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------- 225 (284)
+|||+=||.|.++..++ ..+.+|+|||+++.+++.|++++..+++ .|++|+.++.+++.
T Consensus 199 ~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~~~~~~~~r~~~~~~~ 271 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDFAKALAKAREFNRLKG 271 (352)
T ss_dssp EEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHCCCHHCCS-GGTTGGG
T ss_pred cEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccchhHHHHhhHHHHhhhh
Confidence 79999999999999876 6666899999999999999999987664 57888887665432
Q ss_pred --CCCCceeEEEecchhccCC
Q 023288 226 --PETGRYDVIWVQWCIGHLT 244 (284)
Q Consensus 226 --~~~~~fD~Iv~~~~l~~~~ 244 (284)
.....+|+|+....=..+.
T Consensus 272 ~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 272 IDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp S-GGCTTESEEEE---TT-SC
T ss_pred hhhhhcCCCEEEEcCCCCCch
Confidence 1123689998654433333
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.2e-06 Score=64.79 Aligned_cols=55 Identities=25% Similarity=0.393 Sum_probs=47.5
Q ss_pred eeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++++-......+.+++.|+|++..++.|++-++...++++|++.|||||+|-++
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 4444444455568889999999999999999999999999999999999999997
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=60.39 Aligned_cols=99 Identities=18% Similarity=0.104 Sum_probs=69.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+|+|+||-.|.++..+++.... .|+++|+-|-- ...++.++++|+++-+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeeccCccHHHHHHH
Confidence 457889999999999999977766554 49999986511 1356889999988754
Q ss_pred -CCCCceeEEEecchh--------ccCChhh-HHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 -PETGRYDVIWVQWCI--------GHLTDDD-FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l--------~~~~~~~-~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.....+|+|++-..- +|..... ...++.-+..+|+|||.+++...
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 233457999965332 3332222 33456667789999999999754
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=65.14 Aligned_cols=88 Identities=16% Similarity=0.084 Sum_probs=61.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.++|||||++|.++..+++++. .|++||.++ |-.. +.. ..++.....|...+.++.+.+|+|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~----L~~--------~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQS----LMD--------TGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHh----hhC--------CCCEEEEeccCcccCCCCCCCCEE
Confidence 35788999999999999999998877 699999654 2221 222 356777777766655435789999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpG 262 (284)
+|-.+- ....+.+-+.+.|..|
T Consensus 275 VcDmve------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE------KPARVAELMAQWLVNG 296 (357)
T ss_pred EEeccc------CHHHHHHHHHHHHhcC
Confidence 987662 2335556666666554
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.7e-05 Score=58.66 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=45.6
Q ss_pred eEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC
Q 023288 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~ 223 (284)
.++|+|||+|..+..++..+.. +++++|+++.+.+.+++++...++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeeeC
Confidence 4899999999999988877654 799999999999999999875443 235666555443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.2e-05 Score=61.17 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=69.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC---cEEEEeCCHH----------HHHHHHHHcCCCCCCCCCCCcceeEEEcCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVPL 221 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~----------~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~ 221 (284)
.+++.+|+|+=-|.|.+++-+. .... .|+++-+.+. +-..+++.. ..|.+.+..++
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s-~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~----------~aN~e~~~~~~ 114 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFS-PAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV----------YANVEVIGKPL 114 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhc-hhcCCceeEEEecchhhcccccchhhhhhhhhhhhh----------hhhhhhhCCcc
Confidence 5688999999999999999544 4322 5666543322 111121111 23444555555
Q ss_pred CCCCCCCCceeEEEecchhccC-----ChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcc
Q 023288 222 QDFTPETGRYDVIWVQWCIGHL-----TDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 277 (284)
Q Consensus 222 ~~~~~~~~~fD~Iv~~~~l~~~-----~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~ 277 (284)
..+. ..+..|+++.+...|-+ .......+...+++.|||||.+.+.|+....|+-
T Consensus 115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~ 174 (238)
T COG4798 115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG 174 (238)
T ss_pred cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC
Confidence 5555 33567777654333322 2334668999999999999999999997665543
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00025 Score=63.41 Aligned_cols=111 Identities=17% Similarity=0.220 Sum_probs=77.2
Q ss_pred CCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCC-CCCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~-~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
+...+||-+|.|.|...+.+++. ++.+++-||+.|+|++.++.+..-.... +....++++++..|.-++- -....||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 34568999999999999998842 2348999999999999998432211110 1122467888888887663 2235899
Q ss_pred EEEecc------hhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQW------CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~------~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.||... ++.-+- -..+..-+.+.|+++|.+++.-
T Consensus 368 ~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEec
Confidence 998532 222111 2368888999999999999863
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00042 Score=58.23 Aligned_cols=107 Identities=15% Similarity=0.019 Sum_probs=69.2
Q ss_pred cCCccCCCCceEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--
Q 023288 150 FPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (284)
Q Consensus 150 l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 225 (284)
+......++.+||-+|+.+|....++..--. . .|++|+.|+......-..++. ..|+--+..|+....
T Consensus 66 l~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------R~NIiPIl~DAr~P~~Y 137 (229)
T PF01269_consen 66 LENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------RPNIIPILEDARHPEKY 137 (229)
T ss_dssp -S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------STTEEEEES-TTSGGGG
T ss_pred ccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------CCceeeeeccCCChHHh
Confidence 3334467889999999999999888876432 2 699999999654433333222 356777778876521
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.--+.+|+|++.-.- +++..-++.++...||+||.++++
T Consensus 138 ~~lv~~VDvI~~DVaQ----p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 138 RMLVEMVDVIFQDVAQ----PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTTS--EEEEEEE-SS----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcccccccEEEecCCC----hHHHHHHHHHHHhhccCCcEEEEE
Confidence 222489999975441 235667889999999999999886
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00012 Score=63.94 Aligned_cols=106 Identities=19% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCceEEEeeccccHHHHHHHHhC--C-CcEEEEeCCHHHHHHHHHHcC-CCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY--F-NEVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~--~-~~v~gvD~S~~~l~~ar~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
.+.+|+=||||.=-+|.-++... . ..|+++|+++..++.+++... ..++ ..++.|+++|..+...+-..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~~~dl~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDVTYDLKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----S
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhccccccccCC
Confidence 45699999999877777665532 2 268999999999999998776 3333 4678999999877654446899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+...... ++.++..+++.++.+.++||..+++.
T Consensus 195 vV~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 998765443 23346679999999999999999986
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00019 Score=60.75 Aligned_cols=98 Identities=24% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC--CCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD 232 (284)
..++..+||+|+-||.++..+++++...|+++|..-.++..--+.- ...+.+...++..+..+ .+..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEEecCChhhCCHHHcccCCC
Confidence 3567899999999999999999999999999999988877543331 11233444566554321 13678
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+|++--+|. .+..++..+..+++|+|.++.
T Consensus 147 ~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 147 LIVIDVSFI-----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred eEEEEeehh-----hHHHHHHHHHHhcCCCceEEE
Confidence 999877654 455899999999999997766
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0005 Score=59.19 Aligned_cols=100 Identities=13% Similarity=0.052 Sum_probs=77.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--CCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~ 230 (284)
..++.+|||-|.|+|.++.++++...+ +++-+|+...-.+.|++.++..+. ..++++..-|+....+ ....
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDVc~~GF~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDVCGSGFLIKSLK 177 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeecccCCccccccc
Confidence 678999999999999999999876544 799999999999999999988775 6789999999887543 3567
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCc-EEE
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFV 266 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG-~li 266 (284)
+|.|+.-.. ..-.++-.++.+||.+| +|+
T Consensus 178 aDaVFLDlP-------aPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 178 ADAVFLDLP-------APWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred cceEEEcCC-------ChhhhhhhhHHHhhhcCceEE
Confidence 898886543 22245556666777766 444
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.5e-05 Score=59.63 Aligned_cols=132 Identities=16% Similarity=0.102 Sum_probs=79.9
Q ss_pred cccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCC
Q 023288 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMA 207 (284)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~ 207 (284)
.....+..+.+.+...+..-.. .-.+.+|||+|.|--.++--+.+...+ .|..+|-+...++..++....+..+.
T Consensus 5 tgnvciwpseeala~~~l~~~n---~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~ 81 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDPN---KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS 81 (201)
T ss_pred CCcEEecccHHHHHHHHHhchh---HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc
Confidence 3344556666666665532211 335679999999954444434433333 79999999999998887654421100
Q ss_pred CCCCcceeEEEcCCCC--CCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 208 PDMHKATNFFCVPLQD--FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 208 ~~~~~~~~~~~~d~~~--~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
..++....-+... ...+...||.|++..++-. ++-...+++.+.++|+|.|.-++.-
T Consensus 82 ---~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 82 ---LTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred ---cceehhhHHHHhhhHHHHhhCcccEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEec
Confidence 0111111111111 1123458999999998755 3456789999999999999766543
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=8e-05 Score=66.12 Aligned_cols=118 Identities=15% Similarity=0.042 Sum_probs=73.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
-.+.+|||+|.|.|....++..-.+. .++.++.|+..-+............. ...+..-+..|-..++.. ..|++
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~--td~r~s~vt~dRl~lp~a-d~ytl 188 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK--TDWRASDVTEDRLSLPAA-DLYTL 188 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc--CCCCCCccchhccCCCcc-ceeeh
Confidence 35567999999999877654433333 78888989876665544433221100 000111122222233322 47888
Q ss_pred EEecchhccCCh-hhHHHHHHHHHhcCCCCcEEEEEeccCCCCc
Q 023288 234 IWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276 (284)
Q Consensus 234 Iv~~~~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (284)
|+...-+-+... ..+...++.+..++.|||.|+|.|.-.+.|+
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 877665555432 2355689999999999999999998888776
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.51 E-value=2.6e-05 Score=58.26 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=42.6
Q ss_pred EEeeccccHHHHHHHHhC---C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEE
Q 023288 162 LDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (284)
Q Consensus 162 LDiGcGtG~~s~~l~~~~---~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Iv 235 (284)
||||+..|..+..+++.. . .+++++|..+. .+..++..+..++ ..+++++.++..+.- ++.++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 689999999988777532 1 25999999985 2223333322222 356899999876541 2246899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.-.. |. .+.....+..+.+.|+|||.+++-|
T Consensus 75 iDg~-H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 IDGD-HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EES------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ECCC-CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 7653 11 1245678899999999999988854
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0001 Score=68.50 Aligned_cols=100 Identities=14% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHH----HHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH----FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~----~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
..-..|+|..+|.|.++.+|.... |+....-|. .+...- +.|+ +-.+..-.+.++.-+.+|
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIy----dRGL--------IG~yhDWCE~fsTYPRTY 428 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIY----DRGL--------IGVYHDWCEAFSTYPRTY 428 (506)
T ss_pred cceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhh----hccc--------chhccchhhccCCCCcch
Confidence 344579999999999999886442 444443332 122111 1122 111222233455445899
Q ss_pred eEEEecchhccCC-hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~-~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+|.+..+|.... .-++..++-++.|+|||||.++|.|.
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 9999999887654 23478899999999999999999875
|
; GO: 0008168 methyltransferase activity |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00097 Score=62.23 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=71.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCC--C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET--G 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~--~ 229 (284)
.+.+..++|+-||||.++..++ ++...|+||++++..++.|+.++..+|. .|.+|+++-.++.- +.. +
T Consensus 381 l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~gqaE~~~~sl~~~~~~ 453 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI------SNATFIVGQAEDLFPSLLTPCCD 453 (534)
T ss_pred CCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc------cceeeeecchhhccchhcccCCC
Confidence 5566889999999999999777 6666799999999999999999998775 67899999555532 111 1
Q ss_pred ceeEEE-ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIW-VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv-~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+=++|. ..-.=-.+. ..+++.+.+.-+|--.++++-|
T Consensus 454 ~~~~v~iiDPpR~Glh----~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 454 SETLVAIIDPPRKGLH----MKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred CCceEEEECCCccccc----HHHHHHHHhccCccceEEEEcC
Confidence 334332 221111111 1456666555557777777654
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00051 Score=60.72 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=79.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (284)
+.++.+|||+.++.|.-+..++..... .+++.|+++.-+...++++...|. .++.....|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 667889999999999999988887653 899999999999999988877653 45666666665542 22236
Q ss_pred eeEEEe----cc--hhccCChh-------h-------HHHHHHHHHhcC----CCCcEEEEE
Q 023288 231 YDVIWV----QW--CIGHLTDD-------D-------FVSFFKRAKVGL----KPGGFFVLK 268 (284)
Q Consensus 231 fD~Iv~----~~--~l~~~~~~-------~-------~~~~l~~~~r~L----kpGG~lii~ 268 (284)
||.|+. ++ ++..-++- + ...+|+++.+.+ ||||+++.+
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs 218 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYS 218 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence 999983 22 23322211 1 356899999999 999999986
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=56.99 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=72.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHc---CC--------------------CCCCCCCC--
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL---AP--------------------ENHMAPDM-- 210 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~---~~--------------------~~~~~~~~-- 210 (284)
....+||--|||.|+++..++..++. +-|=+.|--|+=...-.+ .. ..+....+
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 45678999999999999999988886 777788887765432211 00 00100000
Q ss_pred -------CcceeE--EEcCCCCCCC---CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 211 -------HKATNF--FCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 211 -------~~~~~~--~~~d~~~~~~---~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.....| ..+|+.+.-. ..++||+|+.++.+.... +...++..+...|||||+.+-.
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEec
Confidence 000111 2245444321 234799999998877644 7889999999999999988764
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=57.84 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=47.3
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCC-CCCCCCCCcceeEEEcCCCC-----CCCCCCc
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQD-----FTPETGR 230 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~-~~~~~~~~~~~~~~~~d~~~-----~~~~~~~ 230 (284)
..++||||||...+-.-|..+.+. +++|+|+++..++.|++++..+ ++ ..+|+++...-.. ...+...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----ESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----ccceEEEEcCCccccchhhhcccce
Confidence 568999999988664434443222 7999999999999999999875 44 4567776552211 1123458
Q ss_pred eeEEEecchhccCC
Q 023288 231 YDVIWVQWCIGHLT 244 (284)
Q Consensus 231 fD~Iv~~~~l~~~~ 244 (284)
||+..|+..|+.-.
T Consensus 178 ~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEEE-----SS-
T ss_pred eeEEecCCccccCh
Confidence 99999999988755
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0019 Score=55.56 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=68.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCc-ee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGR-YD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~-fD 232 (284)
...+||++|+|+|..+..++.....+|+..|+... ++..+.+....+......+..+.....+..+.+ .-... ||
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 45679999999998888666545557888886544 333333322222211111223444444443322 11123 99
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+++.++.+-. ....++..++..|..+|.+++.-
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEE
Confidence 999999987755 55688888999999999666653
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0068 Score=50.16 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=76.4
Q ss_pred HHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC
Q 023288 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (284)
Q Consensus 146 ~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (284)
+...+...+..++.+||=+|+-+|....++..--.. .+++|++|+.+....-..+.. ..|+--+..|+..-
T Consensus 65 Il~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--------R~Ni~PIL~DA~~P 136 (231)
T COG1889 65 ILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--------RPNIIPILEDARKP 136 (231)
T ss_pred HHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--------CCCceeeecccCCc
Confidence 333444455788999999999999998888754332 699999999887665555444 35566667777542
Q ss_pred C---CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 225 T---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 225 ~---~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. .--+..|+|+.--+ .+.+..-+..++...||+||.++++
T Consensus 137 ~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 137 EKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred HHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 1 11246888886433 1224556788999999999976664
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00077 Score=52.78 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=56.7
Q ss_pred cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEEEecchhccCChhh---------HHH
Q 023288 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDD---------FVS 250 (284)
Q Consensus 182 ~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~Iv~~~~l~~~~~~~---------~~~ 250 (284)
+|+++|+-+..++.+++++...+. ..+++++..+=+.+. .+.+++|+|+.+.. |+|..| -..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHH
Confidence 489999999999999999987665 347889888666553 22258999987643 443322 567
Q ss_pred HHHHHHhcCCCCcEEEEE
Q 023288 251 FFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 251 ~l~~~~r~LkpGG~lii~ 268 (284)
+++.+.++|+|||.+.++
T Consensus 74 Al~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhccCCEEEEE
Confidence 899999999999999886
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0069 Score=50.78 Aligned_cols=78 Identities=17% Similarity=-0.009 Sum_probs=62.1
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.++.||||-.|++..++...+.. .+++.|++++-++.|.+++...++ ...++..++|....--.+..+|+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~~l~~~d~~d~iv 90 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLAVLELEDEIDVIV 90 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCccccCccCCcCEEE
Confidence 4456999999999999999987766 899999999999999999998776 4677788887633222234799998
Q ss_pred ecch
Q 023288 236 VQWC 239 (284)
Q Consensus 236 ~~~~ 239 (284)
..++
T Consensus 91 IAGM 94 (226)
T COG2384 91 IAGM 94 (226)
T ss_pred EeCC
Confidence 7654
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0037 Score=55.56 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=59.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (284)
..++..++|.-||.|..+..++.... .+|+|+|.++.+++.+++++... ..++.++.+++.++. ...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHHHHHHhcCC
Confidence 45778999999999999999997643 47999999999999999987542 246888888877653 123
Q ss_pred CceeEEEec
Q 023288 229 GRYDVIWVQ 237 (284)
Q Consensus 229 ~~fD~Iv~~ 237 (284)
.++|.|++.
T Consensus 91 ~~vDgIl~D 99 (305)
T TIGR00006 91 TKIDGILVD 99 (305)
T ss_pred CcccEEEEe
Confidence 468888844
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0021 Score=55.01 Aligned_cols=84 Identities=13% Similarity=0.026 Sum_probs=58.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..+.+|+|||||.--++..+...... .++|+|++..+++......... ....++...|+..-++ ....|+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-------~~~~~~~v~Dl~~~~~-~~~~Dla 175 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-------GVPHDARVRDLLSDPP-KEPADLA 175 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-------T-CEEEEEE-TTTSHT-TSEESEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-------CCCcceeEeeeeccCC-CCCcchh
Confidence 45789999999999999877643322 7999999999999998876543 2456777778776543 3589999
Q ss_pred EecchhccCChhh
Q 023288 235 WVQWCIGHLTDDD 247 (284)
Q Consensus 235 v~~~~l~~~~~~~ 247 (284)
+..=+++.+....
T Consensus 176 LllK~lp~le~q~ 188 (251)
T PF07091_consen 176 LLLKTLPCLERQR 188 (251)
T ss_dssp EEET-HHHHHHHS
T ss_pred hHHHHHHHHHHHh
Confidence 9887777665443
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0062 Score=49.74 Aligned_cols=99 Identities=21% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCCC------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT------ 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~~------ 225 (284)
..++.+|||+||.+|.++.-..++- +. .|.|||+-+ +.. ...++++++ |+++..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p--------~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP--------PEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC--------CCCcccccccccCCHHHHHHHH
Confidence 3578899999999999999554443 22 699999732 111 233555555 665531
Q ss_pred --CCCCceeEEEecchhccC--Chhh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 --PETGRYDVIWVQWCIGHL--TDDD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 --~~~~~fD~Iv~~~~l~~~--~~~~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.++...|+|++-..-... ..-| ...++.-....++|+|.|++.-.
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 455689999975432111 1111 22334444567789999999643
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0084 Score=52.76 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=68.5
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEEEec
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~Iv~~ 237 (284)
+++|+-||.|.++..+...++..+.++|+++..++..+.++... .++.|+.++... ...+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------------CccCccccCchhhcCCCCCEEEeC
Confidence 69999999999999888778888999999999999999887531 445666665432 3579999966
Q ss_pred chhccCCh--------hhHHHH---HHHHHhcCCCCcEEEEEeccCC
Q 023288 238 WCIGHLTD--------DDFVSF---FKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 238 ~~l~~~~~--------~~~~~~---l~~~~r~LkpGG~lii~e~~~~ 273 (284)
.....++. +....+ +-++.+.++|. +++.||+..
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g 114 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKG 114 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcc
Confidence 54332221 111112 22344445665 778899754
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0032 Score=48.10 Aligned_cols=47 Identities=17% Similarity=-0.014 Sum_probs=43.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~ 203 (284)
.+.+|+|||++.|..+.+++-++...|+++++++...+..+++.+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 56799999999999999999999999999999999999999987653
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0021 Score=58.84 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=66.4
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEEe
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv~ 236 (284)
...|||||+|||.++....+.+...|++++.=..|.+.|++....+|. ..++.++.---++.... ..+.|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----ccceeeeccccceeeecCcchhhhhhH
Confidence 346999999999999977777888999999999999999999988776 35666665544443322 124676665
Q ss_pred cchhccCChhhHHHHHHHHHhcCC
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLK 260 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~Lk 260 (284)
..+...+.-+.....++++++.|-
T Consensus 142 e~fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 142 EDFDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhhhccccchhHHHHHHHhc
Confidence 444333322223345566665553
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0029 Score=52.31 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=66.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCC-CCCCCCcceeEEEcCCCCCC---CCCCce
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH-MAPDMHKATNFFCVPLQDFT---PETGRY 231 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~-~~~~~~~~~~~~~~d~~~~~---~~~~~f 231 (284)
+...+.|||||.|.+...|...++. -+.|.+|--..-+..++++..... .......|+.....+...+. ++.+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4567999999999999988855555 688999888877777776543211 01111345555555443332 222222
Q ss_pred eEEEecchhccCChh------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+-++..+.=-|+... --..++.+..=+|++||.++..
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 222222221222110 0235788889999999998875
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0035 Score=53.82 Aligned_cols=112 Identities=17% Similarity=0.107 Sum_probs=73.7
Q ss_pred CCCc--eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC-CCC--CCcceeEEEcCCCCCC-CCCC
Q 023288 156 NQHL--VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APD--MHKATNFFCVPLQDFT-PETG 229 (284)
Q Consensus 156 ~~~~--~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~-~~~--~~~~~~~~~~d~~~~~-~~~~ 229 (284)
+++. +|||+-+|+|..+..++..++. |+++|-++.+....++.+...... ... ...+++++..|..++- -...
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 3444 8999999999999999988887 999999999988888776542110 000 1246788888876653 1124
Q ss_pred ceeEEEecchhccCC------------------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCIGHLT------------------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~------------------~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+||+|++--.+.|-. +.+-..+|..+.++-+ -++++.+.
T Consensus 164 ~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp 220 (250)
T PRK10742 164 RPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRP 220 (250)
T ss_pred CCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecC
Confidence 799999654443311 1223456666666554 56666654
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0073 Score=55.39 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=36.7
Q ss_pred CCCCCceeEEEecchhccCCh------------------------------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 225 TPETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 225 ~~~~~~fD~Iv~~~~l~~~~~------------------------------------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
-+|.++.+++++++++|+++. .|+..+|+.=++-|.|||.++++
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 477889999999999999972 13455666667789999999998
Q ss_pred ecc
Q 023288 269 ENI 271 (284)
Q Consensus 269 e~~ 271 (284)
=..
T Consensus 237 ~~G 239 (386)
T PLN02668 237 CLG 239 (386)
T ss_pred Eec
Confidence 543
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0098 Score=51.60 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=36.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCC---------CcEEEEeCCHHHHHHHHHHcCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~---------~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
.+.+|+|+|+|+|.++..+++... .+++.||+|+.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 458999999999999999987322 1799999999999999998876
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.04 Score=47.12 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=79.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-----cEEEEeCCHHHHHHHHHHc-CCCCCCCCCCCcceeEEEcCCCC----CC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESL-APENHMAPDMHKATNFFCVPLQD----FT 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-----~v~gvD~S~~~l~~ar~~~-~~~~~~~~~~~~~~~~~~~d~~~----~~ 225 (284)
..+...+|+|+|+-.-++.++..... +++.+|+|...++...+.+ .... ...+.-+++|.+. ++
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~------~l~v~~l~~~~~~~La~~~ 150 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP------GLEVNALCGDYELALAELP 150 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC------CCeEeehhhhHHHHHhccc
Confidence 34678999999999988877764332 8999999999988654433 2211 2234455566543 22
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE-eccCCCC
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIARSG 275 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~-e~~~~~~ 275 (284)
..++==.++...++.++++++...++..+...|+||-++++. |.+.+.+
T Consensus 151 -~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae 200 (321)
T COG4301 151 -RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAE 200 (321)
T ss_pred -CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHH
Confidence 223334455667899999999999999999999999999885 5554433
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=53.67 Aligned_cols=109 Identities=16% Similarity=0.059 Sum_probs=78.2
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCC
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~ 228 (284)
.++++.||||..+-.|.=+.+++.-.-. .|++.|.+..-+...+.++...|. .+......|..+++ ++
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~- 310 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP- 310 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-
Confidence 3788999999999999988877764333 699999999999999998877663 34445566776664 34
Q ss_pred CceeEEE----ecc--hhc------cCC-hh-------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIW----VQW--CIG------HLT-DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv----~~~--~l~------~~~-~~-------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++||-|. |+. ++. ... .. -..++|..+..+++|||+|+.+.
T Consensus 311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 3899998 333 110 000 00 13467888889999999999874
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.013 Score=53.05 Aligned_cols=111 Identities=19% Similarity=0.100 Sum_probs=60.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-----------CC---C---cEEEEeCCHH-HHHHHHH------HcCCCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-----------YF---N---EVDLLEPVSH-FLDAARE------SLAPENHMAPDM 210 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-----------~~---~---~v~gvD~S~~-~l~~ar~------~~~~~~~~~~~~ 210 (284)
.....+|+|+||..|..+..+... .. . +|..-|.-.. +-...+. ......
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~------ 87 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR------ 87 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT------
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc------
Confidence 456789999999999998866551 11 1 5777774322 1111111 000000
Q ss_pred CcceeEEEcCCCCCCCCCCceeEEEecchhccCCh-------------------------------------hhHHHHHH
Q 023288 211 HKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------------DDFVSFFK 253 (284)
Q Consensus 211 ~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~-------------------------------------~~~~~~l~ 253 (284)
..-+..+.+.+-.=-+|+++.|++++++++||++. .|+..+|+
T Consensus 88 ~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~ 167 (334)
T PF03492_consen 88 NYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLK 167 (334)
T ss_dssp SEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11122333455544577899999999999999852 13455666
Q ss_pred HHHhcCCCCcEEEEEecc
Q 023288 254 RAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 254 ~~~r~LkpGG~lii~e~~ 271 (284)
.=++-|+|||.+++.=..
T Consensus 168 ~Ra~ELv~GG~mvl~~~g 185 (334)
T PF03492_consen 168 ARAEELVPGGRMVLTFLG 185 (334)
T ss_dssp HHHHHEEEEEEEEEEEEE
T ss_pred HhhheeccCcEEEEEEee
Confidence 666788999999997443
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0018 Score=48.26 Aligned_cols=38 Identities=39% Similarity=0.713 Sum_probs=30.1
Q ss_pred ceeEEEecchhc--cC--ChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 230 RYDVIWVQWCIG--HL--TDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 230 ~fD~Iv~~~~l~--~~--~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
.||+|+|-.+.. |+ .|+.+..+++++++.|+|||.|++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 489999877654 33 455689999999999999999988
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.032 Score=50.29 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=67.9
Q ss_pred cCCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC-CCCCCCCCCce
Q 023288 154 RNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRY 231 (284)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~f 231 (284)
...++.+|+=+|+| -|..+..+++....+|+++|.|++-++.|++.-.. .++... -.....-.+.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd------------~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD------------HVINSSDSDALEAVKEIA 230 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc------------EEEEcCCchhhHHhHhhC
Confidence 45678888888887 55677878875557899999999999999987544 122222 11111111249
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|+..-. . ..+....+.||+||++++.-+.
T Consensus 231 d~ii~tv~-~--------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-P--------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-h--------hhHHHHHHHHhcCCEEEEECCC
Confidence 99987555 2 4566777889999999998665
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.029 Score=44.13 Aligned_cols=95 Identities=20% Similarity=0.074 Sum_probs=64.0
Q ss_pred cccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCccee
Q 023288 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (284)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~ 215 (284)
....+.++..+. ++. .++..+.+|+|+|.|++-...++.+...-+|++++|-.+..+|-+.-..|. .....
T Consensus 55 pAtteQv~nVLS-ll~---~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----~k~tr 125 (199)
T KOG4058|consen 55 PATTEQVENVLS-LLR---GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----AKSTR 125 (199)
T ss_pred CccHHHHHHHHH-Hcc---CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----ccchh
Confidence 334444555433 333 456689999999999998877766645689999999999998877655444 34566
Q ss_pred EEEcCCCCCCCCCCceeEEEecch
Q 023288 216 FFCVPLQDFTPETGRYDVIWVQWC 239 (284)
Q Consensus 216 ~~~~d~~~~~~~~~~fD~Iv~~~~ 239 (284)
|..-|+-.+...+-.+-+|+....
T Consensus 126 f~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 126 FRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred hhhhhhhhccccccceEEEeehHH
Confidence 777777666655434444544433
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.026 Score=52.34 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=74.2
Q ss_pred CCCceEEEeeccccHHHHH--HHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 156 NQHLVALDCGSGIGRITKN--LLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~--l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
..+..++|+|.|.|.-... .+.+. ...++.||.|..|+.............+.....+..|...- +| .....|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~---~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQR---LPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhccc---CCCCcccce
Confidence 4566788998887754432 22232 33799999999999999888766221111111111122111 12 223469
Q ss_pred eEEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEEeccCCCCc
Q 023288 232 DVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKENIARSGT 276 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (284)
|+|++.+.+++++... ....-.-..+..++||.+++.|...+.++
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~ 322 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGL 322 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccch
Confidence 9999999999986443 22233445567899999999998777665
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.013 Score=51.20 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=79.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
...+.+||-||.|.|...+..... .+.++..+|+....++..++.+.... .....+++....+|-..+- ...++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la--~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLA--CGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHh--cccCCCceEEEeccHHHHHHHhccCCc
Confidence 456789999999999998877644 22289999999999999888775421 1223567778888765442 335799
Q ss_pred eEEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|+.-..=.-.+... ...++.-+.+.|||||++++..
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9999543311122111 4578888999999999999874
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0034 Score=54.57 Aligned_cols=112 Identities=16% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH-HcCCC---CCCCCCCCcceeEEEcCCCCCCC-CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE-SLAPE---NHMAPDMHKATNFFCVPLQDFTP-ETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~-~~~~~---~~~~~~~~~~~~~~~~d~~~~~~-~~~ 229 (284)
...+.+|||+|||.|.........+...+...|+|...++.-.- +.... +........-.......+.++.+ ..+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 45678999999999999987776665679999999888742110 00000 00000001111122221112221 112
Q ss_pred --ceeEEEecchhccCChhhHHHH-HHHHHhcCCCCcEEEEE
Q 023288 230 --RYDVIWVQWCIGHLTDDDFVSF-FKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 --~fD~Iv~~~~l~~~~~~~~~~~-l~~~~r~LkpGG~lii~ 268 (284)
.||+|.++.++...+ ....+ ......+++++|.++++
T Consensus 194 ~~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhh
Confidence 799999998877665 33344 66677888999988875
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.026 Score=50.87 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhC---------CCcEEEEeCCHHHHHHHHHHcCC
Q 023288 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~---------~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
+.+..++.+.+.....+.+..++|||.|+|.++..+++.. ..++..|++|++..+.=+++++.
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3344444444433334567789999999999999888732 22899999999999998888876
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.064 Score=45.67 Aligned_cols=106 Identities=17% Similarity=0.017 Sum_probs=66.4
Q ss_pred CCccCCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---
Q 023288 151 PNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (284)
Q Consensus 151 ~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 225 (284)
.+...+++.+||-+|++.|..-..+..-..+ -|++|+.|+..=...-..++. ..|+--+.-|+....
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--------RtNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--------RTNIIPIIEDARHPAKYR 221 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--------cCCceeeeccCCCchhee
Confidence 3455778999999999999987766543222 699999987643332222222 245555555665421
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..-+-.|+|++.-. .++....+.-++.-.||+||.|+++
T Consensus 222 mlVgmVDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 222 MLVGMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeeeEEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEE
Confidence 12235677775433 1223445566788899999999987
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.13 Score=49.09 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=65.6
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC----------
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---------- 223 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~---------- 223 (284)
..++.+|+=+||| .|..+...++.....|+++|.+++-++.+++.-.. +...+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~-------------~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE-------------FLELDFEEEGGSGDGYAK 228 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe-------------EEEeccccccccccchhh
Confidence 4578999999999 57777777766555899999999999999874221 11111100
Q ss_pred -CC----------CCC--CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 224 -FT----------PET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 224 -~~----------~~~--~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+. +.+ ..+|+||..-....-+.+ ..+.+++.+.+||||.++..
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCCCCEEEEE
Confidence 00 011 369999976654332211 13359999999999998876
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.088 Score=46.40 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=59.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (284)
+.++...+|.--|.|..+..++..+.. +++|+|-.+.+++.|+++.... ..++.++..++.++. ..
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHHHHHHHhcC
Confidence 567789999999999999999998764 6999999999999999998653 346788888766543 22
Q ss_pred CCceeEEE
Q 023288 228 TGRYDVIW 235 (284)
Q Consensus 228 ~~~fD~Iv 235 (284)
.+++|.|+
T Consensus 94 i~~vDGiL 101 (314)
T COG0275 94 IGKVDGIL 101 (314)
T ss_pred CCceeEEE
Confidence 34677776
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.04 Score=48.94 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=65.8
Q ss_pred cCCCCceEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc--CCCCC-----
Q 023288 154 RNNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQDF----- 224 (284)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~--d~~~~----- 224 (284)
..+.+.+||=+|+| .|..+...++. +..+|+.+|+++.-++.|++ +.... +..... +..++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~---------~~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV---------TDPSSHKSSPQELAELVE 235 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE---------EeeccccccHHHHHHHHH
Confidence 36788999999999 56666655554 44599999999999999999 43311 111111 01111
Q ss_pred -CCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 225 -~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
......+|+.|.+..++ ..++.....+|+||.++++..
T Consensus 236 ~~~g~~~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred hhccccCCCeEEEccCch--------HHHHHHHHHhccCCEEEEecc
Confidence 12223588888665543 566667788999999888865
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.049 Score=48.51 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=54.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C-C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-E 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-~ 227 (284)
+.++...+|.--|.|..+..+++.... +++|+|-.+.+++.|++++... ..++.++..++.++. . .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGGHHHHHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHHHHHHHHHccC
Confidence 567789999999999999999987554 8999999999999999988753 356888888877653 2 3
Q ss_pred CCceeEEEe
Q 023288 228 TGRYDVIWV 236 (284)
Q Consensus 228 ~~~fD~Iv~ 236 (284)
...+|.|++
T Consensus 91 ~~~~dgiL~ 99 (310)
T PF01795_consen 91 INKVDGILF 99 (310)
T ss_dssp TS-EEEEEE
T ss_pred CCccCEEEE
Confidence 357888873
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.051 Score=51.22 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=79.1
Q ss_pred HHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHh---CCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcce
Q 023288 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (284)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~---~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~ 214 (284)
..+...+..+.+....+....|+=+|+|-|-+....++. ... ++++|+-+|..+-....+.-. .. ..++
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~-~W-----~~~V 423 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE-CW-----DNRV 423 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh-hh-----cCee
Confidence 333333433433322233567899999999877655542 122 699999999988766553211 11 4579
Q ss_pred eEEEcCCCCCCCCCCceeEEEecchhccCChhh-HHHHHHHHHhcCCCCcEEEE
Q 023288 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 215 ~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~lii 267 (284)
+++..|+..+..+....|++++- .|.-|.+.+ =.+.|.-+.+.|||+|+.+=
T Consensus 424 tii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 424 TIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred EEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 99999999998665789998853 233333333 24678889999999987654
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.096 Score=47.32 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=74.4
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC--C-ceeEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVI 234 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~-~fD~I 234 (284)
..+++|+=||.|.+..-+...++.-+.++|+++..++.-+.++.. ..+...|+..+..+. . .+|++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCCEE
Confidence 458999999999999988888888899999999999999988763 335556666544221 1 78999
Q ss_pred EecchhccCChh-------h----HHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 235 WVQWCIGHLTDD-------D----FVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 235 v~~~~l~~~~~~-------~----~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+.......++.. | +.--+.++...++| .+++.||+.
T Consensus 72 igGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~ 118 (328)
T COG0270 72 IGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK 118 (328)
T ss_pred EeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc
Confidence 976655544321 1 23445666677888 788889975
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.078 Score=48.82 Aligned_cols=105 Identities=18% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC-C----CCCCCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L----QDFTPE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d-~----~~~~~~ 227 (284)
..++.+||.+|||. |..+..+++.... +++++|.++.+++.+++.... ..+.+...+ + .++ ..
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~---------~vi~~~~~~~~~~~l~~~-~~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA---------ETINFEEVDDVVEALREL-TG 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---------EEEcCCcchHHHHHHHHH-cC
Confidence 45678999999998 8888888877664 599999999999999876321 011111111 1 111 12
Q ss_pred CCceeEEEecchh-------cc----C--ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCI-------GH----L--TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l-------~~----~--~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+|+|+-+-.- ++ . +..+....+.++.+.|+|+|.+++..
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2368988864311 11 1 00122467889999999999998874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.027 Score=51.83 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=72.9
Q ss_pred CCceEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
.+.+|||.=+|+|.=+..++.. +..+|+.-|+|+..++..++++..+++.. ..++..+.|+..+- .....||+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~----~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED----ERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG----CCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC----ceEEEehhhHHHHhhhccccCCE
Confidence 4579999999999888878776 34589999999999999999987766521 14677777776543 23468999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|=.-.. . ....++..+.+.++.||.|.++-
T Consensus 125 IDlDPf----G--Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 125 IDLDPF----G--SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEE--S----S----HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCC----C--CccHhHHHHHHHhhcCCEEEEec
Confidence 864322 2 33479999999999999999974
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.055 Score=45.26 Aligned_cols=104 Identities=8% Similarity=0.026 Sum_probs=54.2
Q ss_pred CCceEEEeeccccHHHHHHHH---hC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----C-
Q 023288 157 QHLVALDCGSGIGRITKNLLI---RY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----P- 226 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~---~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~- 226 (284)
++..|+|+|.-.|..+..++. .. ..+|+|+|+......... .+...+ ..+++++++|..+.. .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~-----~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPM-----SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG---------TTEEEEES-SSSTHHHHTSG
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhccc-----cCceEEEECCCCCHHHHHHHH
Confidence 567999999999988886654 22 238999999543332211 111111 367999999877642 1
Q ss_pred ---CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ---~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
......+|+. .+ +|.. +...+.|+....+++||+++++-|.
T Consensus 105 ~~~~~~~~vlVil-Ds-~H~~-~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 105 ELASPPHPVLVIL-DS-SHTH-EHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SS----SSEEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HhhccCCceEEEE-CC-CccH-HHHHHHHHHhCccCCCCCEEEEEec
Confidence 1123344443 22 2222 2556788889999999999999764
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.034 Score=41.30 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeC
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~ 188 (284)
..++..+...... ..+.....|||||+|.+.--|...++. =.|+|.
T Consensus 43 AAyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 43 AAYLIELWRDMYG---EQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHHhcccC---CCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 3444444443332 245668999999999999877777776 788885
|
; GO: 0008168 methyltransferase activity |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.12 Score=46.73 Aligned_cols=97 Identities=21% Similarity=0.126 Sum_probs=59.9
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.++.+||=+||| .|..+..+++... .+|+++|.+++-++.+++.-... -++....++.+.....+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK---------LVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE---------EecCCcccHHHHhccCCCCCE
Confidence 357789888876 4556666665543 36999999999999988742210 011111122221111235898
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+-.-. . . ..+..+.+.|+|||.+++.-
T Consensus 239 vid~~G-----~-~--~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSG-----H-P--SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCC-----C-H--HHHHHHHHHhhcCCEEEEEc
Confidence 885432 1 1 46677888999999999874
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.26 Score=47.07 Aligned_cols=108 Identities=15% Similarity=0.054 Sum_probs=68.9
Q ss_pred CCCceEEEeeccccHHHHHHHHh---CC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~---~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 225 (284)
.+..+|+|-.||+|.+.....+. .. ..++|.|+++.....|+.+.--.+... .+....+|-..-+
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----~~~i~~~dtl~~~~~~~~ 259 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----DANIRHGDTLSNPKHDDK 259 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----cccccccccccCCccccc
Confidence 45569999999999876654432 11 358999999999999998876554321 1222223222111
Q ss_pred CCCCceeEEEecchhc---cC-------------------Ch-hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 PETGRYDVIWVQWCIG---HL-------------------TD-DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~---~~-------------------~~-~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
...+.||.|+++..+. +. +. ..-..+++.+...|+|||+..|.
T Consensus 260 ~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 260 DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 1336799999775442 10 00 01267999999999999865554
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.29 Score=41.93 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=60.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~I 234 (284)
.+.+||=+|=..-......+...+.+|+.+|+.+.+++..++.+...|+ .++.+..|+.+--++ .++||++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---TTS---TTTSS-BSEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEecccccCCHHHhcCCCEE
Confidence 5689999996654433323334455999999999999999988776543 388888898763222 3799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCc-EEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG-~lii~ 268 (284)
++...-. .+-+.-++.+....||.-| ..+++
T Consensus 117 ~TDPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 117 FTDPPYT---PEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp EE---SS---HHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred EeCCCCC---HHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9875521 2457789999999999766 44443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.039 Score=47.08 Aligned_cols=83 Identities=13% Similarity=0.168 Sum_probs=45.9
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH---HcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEE
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE---SLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~---~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~I 234 (284)
.+|||.-||-|.-+.-++.-++ +|++++-||.+-...+. ++............+++++.+|..++ ..++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999997775555 59999999987554442 22111110011124789999998875 3456799999
Q ss_pred Eecchhcc
Q 023288 235 WVQWCIGH 242 (284)
Q Consensus 235 v~~~~l~~ 242 (284)
++-.+|.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 97766654
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.1 Score=44.27 Aligned_cols=83 Identities=18% Similarity=0.174 Sum_probs=54.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-----CCCCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-----FTPETG 229 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~ 229 (284)
.++.++||||.|.-.+-.-+--+.+ -+.+|.|+++..++.|+..+..+ ......++.....-.+ ..-.++
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N----~~l~~~I~lr~qk~~~~if~giig~nE 152 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISAN----PGLERAIRLRRQKDSDAIFNGIIGKNE 152 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcC----cchhhheeEEeccCccccccccccccc
Confidence 4677999999997655442222222 27999999999999999988764 1113334444332111 112256
Q ss_pred ceeEEEecchhcc
Q 023288 230 RYDVIWVQWCIGH 242 (284)
Q Consensus 230 ~fD~Iv~~~~l~~ 242 (284)
.||++.|+..||.
T Consensus 153 ~yd~tlCNPPFh~ 165 (292)
T COG3129 153 RYDATLCNPPFHD 165 (292)
T ss_pred eeeeEecCCCcch
Confidence 8999999999885
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.13 Score=45.63 Aligned_cols=114 Identities=15% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCceEEEeeccccHHHHHHHHhC-------C--------------CcEEEEeCCHH--HHHHHHHHcCCC----------
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-------F--------------NEVDLLEPVSH--FLDAARESLAPE---------- 203 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-------~--------------~~v~gvD~S~~--~l~~ar~~~~~~---------- 203 (284)
+..+||-||.|.|.-...++.-. . -.++.||+.+- .++.....+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987665555432 0 06999998864 455555544433
Q ss_pred CC-CCCCCCcceeEEEcCCCCCCCCC-------CceeEEEecchhccC---ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 204 NH-MAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 204 ~~-~~~~~~~~~~~~~~d~~~~~~~~-------~~fD~Iv~~~~l~~~---~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.. ....-.-++.|.+.|+..+..++ ...|+|...+++..+ ....-.++|.++...++||-.|+|+|.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 11122346889999988765321 246888877766543 222467899999999999999999986
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.38 Score=43.84 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=64.4
Q ss_pred CCceEEEeecc-ccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCC-C-CCCCC-Cc
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQ-D-FTPET-GR 230 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~-~-~~~~~-~~ 230 (284)
++.+|+=+||| .|.++..+++.. ..+|+.+|.++.-++.|++....... ..... +.. . ..... ..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~---------~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV---------VNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe---------ecCccccHHHHHHHHhCCCC
Confidence 34489999999 577777666553 45899999999999999986543110 00000 000 0 01111 26
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|+|+-+.. . . ..+..+.++++|||.+++.-..
T Consensus 239 ~D~vie~~G---~---~--~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG---S---P--PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC---C---H--HHHHHHHHHhcCCCEEEEEecc
Confidence 999985444 1 2 5888999999999999997443
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.024 Score=49.70 Aligned_cols=107 Identities=21% Similarity=0.144 Sum_probs=70.3
Q ss_pred CCceEEEeeccccHHHH-HHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~-~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+..|.|+=+|.|+++. .+...+...|.++|.+|..++..++.+..++. ..+.....+|-. .+.+....|.|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V-----~~r~~i~~gd~R-~~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV-----MDRCRITEGDNR-NPKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch-----HHHHHhhhcccc-ccCccccchhee
Confidence 45789999999999999 66767888999999999999999998876432 122223333432 233446778777
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCC-Cc-EEEEEeccCCCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKP-GG-FFVLKENIARSG 275 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~Lkp-GG-~lii~e~~~~~~ 275 (284)
.... |..+ +---.+.++||| || .+-|-||+..++
T Consensus 268 LGLl----PSse--~~W~~A~k~Lk~eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 268 LGLL----PSSE--QGWPTAIKALKPEGGSILHIHENVKDSD 303 (351)
T ss_pred eccc----cccc--cchHHHHHHhhhcCCcEEEEeccccccc
Confidence 5433 2111 233334556676 44 666778876554
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.55 Score=40.94 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=69.1
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-------CCCCC
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-------TPETG 229 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-------~~~~~ 229 (284)
...|+.+|||-=.-...+.......++=+|. |++++.-++.+...+. ....+..++..|+.+ + .+..+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGA---EPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCC---CCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 3469999999755544442111113555553 4456655555554221 113456778888752 1 12223
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.--++++-.++.|++.++...+++.+.+...||+.+++-
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 455788889999999999999999999998899988874
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.33 Score=38.92 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=65.5
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHH-HHHHHcCCCCCCCCCCCcceeEEEcCCC-CCCCCCCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD-AARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~-~ar~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~Iv 235 (284)
+.+++-+|...=..-...+..+..++..|+.++--++ ..+.+.. ++...|+. ++.--.++||.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchhhh
Confidence 3567778888666666556677778888887641111 0111111 01111111 1111236899999
Q ss_pred ecchhccCCh---------hhHHHHHHHHHhcCCCCcEEEEEeccCCCCccc
Q 023288 236 VQWCIGHLTD---------DDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278 (284)
Q Consensus 236 ~~~~l~~~~~---------~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~ 278 (284)
|..+++|+.- ..-...+.++.++|||||.++++-.+.++...+
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~f 120 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQF 120 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEE
Confidence 9999988721 113467889999999999999987766655443
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.077 Score=48.82 Aligned_cols=58 Identities=7% Similarity=0.180 Sum_probs=51.8
Q ss_pred cceeEEEcCCCCCC--CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 212 KATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 212 ~~~~~~~~d~~~~~--~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+++++..++.+.. .+++++|.++....+.+++++++.+.++++.+.++|||++++--
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 56889999888763 45789999999999999999999999999999999999999963
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.65 Score=41.31 Aligned_cols=93 Identities=24% Similarity=0.191 Sum_probs=61.5
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC------CCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TPE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 227 (284)
..++.+||..||| .|..+..+++....+|++++.++...+.+++.-.. .+...-... ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGAD-------------EVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC-------------EEEcCCCcCHHHHHHHhc
Confidence 4567788888876 47788878876555799999999999988653211 111111100 122
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+.+|+|+.+... ...+.++.+.|+++|.++..
T Consensus 230 ~~~~D~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGT--------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 3579988854321 15778889999999999875
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.1 Score=46.49 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=65.4
Q ss_pred eEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCceeEEEe
Q 023288 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIWV 236 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD~Iv~ 236 (284)
+++|+=||.|.++..+...++..+.++|+++...+.-+.++. .....|+.++. ++. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------ccccccccccccccccc-cceEEEe
Confidence 699999999999999988888889999999999999998863 46677887764 332 5999996
Q ss_pred cchhccCCh---------hh--HHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 237 QWCIGHLTD---------DD--FVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 237 ~~~l~~~~~---------~~--~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.....-++. +. +-.-+-++.+.++| .+++.||+.
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~ 112 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVP 112 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEG
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhhccc--eEEEecccc
Confidence 544333221 11 33334444556688 456669874
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.2 Score=44.92 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=63.9
Q ss_pred EEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEEecch
Q 023288 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWC 239 (284)
Q Consensus 161 VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv~~~~ 239 (284)
|+|+=||.|.++.-+...++.-+.++|+++...+..+.++.. .+...|+.++... -..+|+++....
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEecCC
Confidence 589999999999988878887778899999999999888743 1234566555321 125899885543
Q ss_pred hccCC--------hhhHHHHHH---HHHhcCCCCcEEEEEeccC
Q 023288 240 IGHLT--------DDDFVSFFK---RAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 240 l~~~~--------~~~~~~~l~---~~~r~LkpGG~lii~e~~~ 272 (284)
...++ .+....++. ++.+.++|. +++.||+.
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~ 110 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVK 110 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccH
Confidence 33222 011122333 334445774 78889975
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.33 Score=40.79 Aligned_cols=116 Identities=14% Similarity=0.079 Sum_probs=64.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHcCCC----------------------------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPE---------------------------- 203 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~---~~v~gvD~S~~~l~~ar~~~~~~---------------------------- 203 (284)
...+.++.|--||.|++.--+.--+. ..|.+.|+++.+++.|++++.-.
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 45678999999999998764433222 28999999999999999876320
Q ss_pred --------CCCCCCCCcceeEEEcCCCCCC-----CCCCceeEEEecchhccCC-------hhhHHHHHHHHHhcCCCCc
Q 023288 204 --------NHMAPDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGG 263 (284)
Q Consensus 204 --------~~~~~~~~~~~~~~~~d~~~~~-----~~~~~fD~Iv~~~~l~~~~-------~~~~~~~l~~~~r~LkpGG 263 (284)
.+............+.|+.+.. ......|+|+.-....+++ ..-...+|..++.+|-+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 0000000122456777777632 1122469998654444332 2236789999999996566
Q ss_pred EEEEEec
Q 023288 264 FFVLKEN 270 (284)
Q Consensus 264 ~lii~e~ 270 (284)
++.+++.
T Consensus 209 VV~v~~k 215 (246)
T PF11599_consen 209 VVAVSDK 215 (246)
T ss_dssp EEEEEES
T ss_pred EEEEecC
Confidence 6666543
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.29 Score=37.23 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=59.2
Q ss_pred cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-----C-CCCCceeEEEecchh
Q 023288 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----T-PETGRYDVIWVQWCI 240 (284)
Q Consensus 167 GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~fD~Iv~~~~l 240 (284)
|.|.++..+++....+|+++|.++.-++.+++.-.. .++..+-.++ . .....+|+|+-+-.-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~------------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD------------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES------------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc------------ccccccccccccccccccccccceEEEEecCc
Confidence 568888888887668899999999999999875322 1111111111 0 122479999855331
Q ss_pred ccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 241 ~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
. ..++....+|+|||.+++.-...
T Consensus 69 ------~--~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ------G--DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------H--HHHHHHHHHEEEEEEEEEESSTS
T ss_pred ------H--HHHHHHHHHhccCCEEEEEEccC
Confidence 2 68888999999999999986544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.53 Score=42.54 Aligned_cols=93 Identities=17% Similarity=0.076 Sum_probs=58.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
..++.+||=+||| .|.++..+++. +..+|+++|.++.-++.+++ +.. .....++. +...+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~------------~~~~~~~~----~~~g~ 223 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE------------TYLIDDIP----EDLAV 223 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc------------eeehhhhh----hccCC
Confidence 3567899999987 44455555654 24479999999988888865 211 01001111 11248
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|+-.-. . ......+....++|++||++++.-
T Consensus 224 d~viD~~G--~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 224 DHAFECVG--G---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred cEEEECCC--C---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 98884322 1 011257888889999999998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.89 Score=43.08 Aligned_cols=45 Identities=18% Similarity=0.010 Sum_probs=39.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~ 201 (284)
...+++|+=||.|.+...+-..++..|.++|+++...+.-+.++.
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~ 131 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY 131 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC
Confidence 467999999999999998887788778999999999988888763
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.32 Score=42.93 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=46.2
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
+...+..++... ..++..|||.=||+|..+.. +.+...+.+|+|++++.++.|++++..
T Consensus 194 P~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~A-A~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILAS-----SNPGDIVLDPFAGSFTTGAV-AKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 345566655432 45889999999999999884 446566799999999999999999754
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.19 Score=41.36 Aligned_cols=103 Identities=14% Similarity=0.007 Sum_probs=70.0
Q ss_pred CCCceEEEeeccccHHHHHHHHh---CC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~---~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 225 (284)
.++..|+|+|.-.|..+..++.. .. .+|.++|++-..++.+... .+.+.|+.++-.+..
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~i~f~egss~dpai~eqi 136 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPDILFIEGSSTDPAIAEQI 136 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCCeEEEeCCCCCHHHHHHH
Confidence 35678999999999988877763 22 2799999997776655433 245889998876643
Q ss_pred --CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 226 --PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 226 --~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
..++.--+.++-.+-|++. ...+.++-..++|.-|-++++-|..
T Consensus 137 ~~~~~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 137 RRLKNEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred HHHhcCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEeccc
Confidence 1222223333445656544 5557788888999999999887654
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.32 Score=40.73 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=40.1
Q ss_pred cccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023288 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (284)
Q Consensus 136 ~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~ 198 (284)
.-+...+..++... ..++..|||.=||+|..+.... ....+.+|+|+++...+.|++
T Consensus 175 ~kP~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh-----hccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence 34456666666543 3578899999999999998555 555579999999999999874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.38 Score=46.00 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=62.7
Q ss_pred CCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-----------
Q 023288 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----------- 223 (284)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~----------- 223 (284)
.++.+|+=+|||. |..+..++......|+++|.++.-++.+++. .. +++..+..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-Ga------------~~v~v~~~e~g~~~~gYa~~ 228 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GA------------EFLELDFKEEGGSGDGYAKV 228 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC------------eEEeccccccccccccceee
Confidence 4578999999994 5666666666555799999999988888763 21 111111100
Q ss_pred ------------CCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 224 ------------FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 224 ------------~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+.-.-..+|+||..-.+..-+.+ .-+.+++.+.+|||+.++-
T Consensus 229 ~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 229 MSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred cCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence 11012469999876655443322 2467888999999998663
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.27 Score=44.73 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=35.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~ 198 (284)
...-..|+|+|.|.|.++..+.-.+.-.|.+||-|....+.|++
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 34566899999999999997665555589999999888777764
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.2 Score=40.02 Aligned_cols=92 Identities=13% Similarity=-0.064 Sum_probs=59.1
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.+++.+||=.|+| .|..+..+++....+|++++.++.-++.+++.-... .+ +..+. ..+.+|+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~------------vi--~~~~~--~~~~~d~ 226 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS------------AG--GAYDT--PPEPLDA 226 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce------------ec--ccccc--CcccceE
Confidence 5577899999975 455556566554446999999999888887753221 11 11111 1235787
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..... + ..+....+.|++||++++.-.
T Consensus 227 ~i~~~~~---~-----~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAPA---G-----GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCCc---H-----HHHHHHHHhhCCCcEEEEEec
Confidence 6543321 1 467788899999999988654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.25 Score=41.84 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=63.2
Q ss_pred ceEEEeeccccHHHHHHHHhCCC----------cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---
Q 023288 159 LVALDCGSGIGRITKNLLIRYFN----------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~----------~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 225 (284)
.+++|+-+..|.++..+.++.+. .+++||+-+ |. . -..+.-+++|++...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-------P---------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-------P---------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-------c---------cCceEEeecccCCHhHHH
Confidence 57999999999999877664332 289999743 11 1 234667788887643
Q ss_pred -----CCCCceeEEEecch-----hccCC----hhhHHHHHHHHHhcCCCCcEEEE
Q 023288 226 -----PETGRYDVIWVQWC-----IGHLT----DDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 226 -----~~~~~fD~Iv~~~~-----l~~~~----~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+...+.|+|+|-+. +|.+. .+-+.++|+-...+|||||.|+-
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 44568999998754 34332 11255677777899999999875
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.69 Score=41.38 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=58.9
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
++.+||-.|||. |..+..+++.... .+++++.++...+.+++.... .-+.....++..+....+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~---------~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD---------ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC---------EEEcCCchhhhhhhccCCCccEE
Confidence 678888888875 6677767765443 699999999988876653211 00111001111222122459999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.+... . ..++.+.+.|+++|.++..
T Consensus 236 ld~~g~------~--~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGA------P--AALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCC------H--HHHHHHHHHHhcCCEEEEE
Confidence 865331 1 4567888999999999875
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.15 Score=45.07 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=38.8
Q ss_pred ceeEEEcCCCCC--CCCCCceeEEEecchhcc------C----Chh----hHHHHHHHHHhcCCCCcEEEEE
Q 023288 213 ATNFFCVPLQDF--TPETGRYDVIWVQWCIGH------L----TDD----DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 213 ~~~~~~~d~~~~--~~~~~~fD~Iv~~~~l~~------~----~~~----~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+..++++|..++ .+++++||+|++.-.+.- . ..+ -+..++.++.++|||||.|++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 356778887764 355679999998644311 0 001 1357899999999999999885
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.53 Score=40.16 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=61.4
Q ss_pred CCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCcee
Q 023288 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD 232 (284)
.++.+||..|+|. |..+..+++....+|++++.++...+.+++..... .++....+... . ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH---------VIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce---------eccCCcCCHHHHHHHhcCCCCC
Confidence 5678999999995 77777777666668999999998888876542110 00000000000 0 01235699
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|+.+..- . ..+..+.+.|+++|.++..-.
T Consensus 204 ~vi~~~~~------~--~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVGG------P--ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCCC------H--HHHHHHHHhcccCCEEEEEcc
Confidence 99854321 1 356677888999999987643
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.46 Score=43.07 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv 235 (284)
+.+|||-=+|+|.=++.++..... +|+.-|+||..++.+++++..+. ..+...+..|...+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~------~~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS------GEDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC------cccceeecchHHHHHHhcCCCccEEe
Confidence 578999999999888877766544 79999999999999999987641 12344444565544322 35788774
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.-- +. ....++..+.+.++.||.+.++-
T Consensus 127 iDP----FG--SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 127 IDP----FG--SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred cCC----CC--CCchHHHHHHHHhhcCCEEEEEe
Confidence 322 22 23378888999999999999974
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.98 Score=40.90 Aligned_cols=96 Identities=25% Similarity=0.153 Sum_probs=58.7
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~---S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
.++.+||=+||| .|.++..+++....+|++++. ++.-++.+++.-.. .+.....+..+ ....+.|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~----------~v~~~~~~~~~-~~~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT----------YVNSSKTPVAE-VKLVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE----------EecCCccchhh-hhhcCCC
Confidence 467789999987 466667676655447999986 67777777653211 01111111111 0112468
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+|+-.-. . . ..+..+.+.|++||.+++.-.
T Consensus 240 d~vid~~g-----~-~--~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATG-----V-P--PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcC-----C-H--HHHHHHHHHccCCcEEEEEec
Confidence 98886543 1 1 367788899999999987644
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.2 Score=40.53 Aligned_cols=109 Identities=17% Similarity=0.060 Sum_probs=70.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-----cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-----~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 225 (284)
..++.+|||+-+-.|.-+..+++.... .|++=|.++.-+...+........ .+..+...++..++
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~------~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS------PNLLVTNHDASLFPNIYL 226 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC------cceeeecccceecccccc
Confidence 678999999999999999988876442 589999999877777666643221 22233333333322
Q ss_pred -----CCCCceeEEEec-----c-hhccCCh---------------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 -----PETGRYDVIWVQ-----W-CIGHLTD---------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 -----~~~~~fD~Iv~~-----~-~l~~~~~---------------~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....||-|.+- . ++.+.++ .-...++.+..++||+||.++.+.
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 122368888732 1 1111110 012457889999999999999873
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.7 Score=45.34 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=63.2
Q ss_pred ceEEEeeccccHHHHHHHHh----CCC-cEEEEeCCHHHHHHHHHHcCCCCCC-C--CCCCcceeEEEcCCCCCCCCC--
Q 023288 159 LVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHM-A--PDMHKATNFFCVPLQDFTPET-- 228 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~----~~~-~v~gvD~S~~~l~~ar~~~~~~~~~-~--~~~~~~~~~~~~d~~~~~~~~-- 228 (284)
..|+=+|+|-|-+....++. +.. +|++|+-++..+.....+......+ + ...+..++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999876665542 222 7999999966544444443221111 1 112345899999999985331
Q ss_pred ---------CceeEEEecchhccCChhh-HHHHHHHHHhcCCC----CcE
Q 023288 229 ---------GRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKP----GGF 264 (284)
Q Consensus 229 ---------~~fD~Iv~~~~l~~~~~~~-~~~~l~~~~r~Lkp----GG~ 264 (284)
+.+|+||+- .|.-|.+.+ -.+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999963 222233222 23456666667765 775
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.89 Score=38.80 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=44.7
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
+...+..++... ..++..|||.=||+|..+.... +...+++|+|+++...+.+.+++..
T Consensus 149 P~~l~~~~i~~~-----s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 149 PVTSLQPLIESF-----THPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred cHHHHHHHHHHh-----CCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHH
Confidence 345555555422 3478899999999999998655 4445699999999999999888754
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.98 Score=40.96 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=61.9
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCC-C-CCCCC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~ 229 (284)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++.+... .-++.... ++.+ . ....+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD--------EAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC--------EEEECCCcccHHHHHHHHCCC
Confidence 457789999987 4788888888765557999999998888876443321 11111100 1110 0 01123
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+|+|+-+-. . ..+..+.+.|++||.+++.-
T Consensus 228 gvD~v~d~vG-------~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVG-------G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCCEEEEEC
Confidence 6898885332 2 46677888999999998763
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=90.30 E-value=1.3 Score=41.37 Aligned_cols=88 Identities=14% Similarity=-0.030 Sum_probs=56.0
Q ss_pred CCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
-++.+|+=+|||. |......++....+|+++|.++.-++.|+..-. +.. ++.+. . ..+|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-------------~~~--~~~e~-v--~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-------------EVM--TMEEA-V--KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-------------EEc--cHHHH-H--cCCCEE
Confidence 3678999999995 555555555444479999999988877765311 111 11111 1 257999
Q ss_pred EecchhccCChhhHHHHHHH-HHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKR-AKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~-~~r~LkpGG~lii~e 269 (284)
+..-. . ...+.. ..+.+|+||.++..-
T Consensus 262 I~atG-------~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTG-------N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCC-------C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 86432 1 134544 488999999998764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.18 E-value=1.2 Score=36.09 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=57.3
Q ss_pred eeccccHHHHHHHHhCC-C-cEEEE--eCCHHHHHHHH---HHcCCCCCCCCCCCccee-EEEcCCCCCC----CCCCce
Q 023288 164 CGSGIGRITKNLLIRYF-N-EVDLL--EPVSHFLDAAR---ESLAPENHMAPDMHKATN-FFCVPLQDFT----PETGRY 231 (284)
Q Consensus 164 iGcGtG~~s~~l~~~~~-~-~v~gv--D~S~~~l~~ar---~~~~~~~~~~~~~~~~~~-~~~~d~~~~~----~~~~~f 231 (284)
||=|.=.++..|++... . .++++ |......+... +++.... ..++. .+..|++++. ...+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~------~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR------ELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh------hcCCccccCCCCCcccccccccCCcC
Confidence 56666677777777644 2 45554 43333333222 2221110 01122 3345666654 245789
Q ss_pred eEEEecchhccC-----------ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHL-----------TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~-----------~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|.|+.++.-..- ...=+..+++.+..+|+++|.+.|+
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999987653220 0112678999999999999999997
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=90.03 E-value=2.9 Score=30.99 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=55.3
Q ss_pred ccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCceeEEEecc
Q 023288 166 SGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQW 238 (284)
Q Consensus 166 cGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~Iv~~~ 238 (284)
||.|..+..+++ .....|+.+|.++..++.+++.. ..++.+|..+.. ..-.+.|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-------------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-------------VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-------------SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-------------cccccccchhhhHHhhcCccccCEEEEcc
Confidence 666777776655 33336999999999999887653 457888887643 2234688777654
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. ++.....+....+.+.|...++..
T Consensus 71 ~-----~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 D-----DDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp S-----SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred C-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3 223334555566777888877765
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=89.78 E-value=4.4 Score=35.98 Aligned_cols=96 Identities=11% Similarity=0.037 Sum_probs=60.2
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCC--CCCCC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF--TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~--~~~~~ 229 (284)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++. ... .-+..... +..+. ....+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l-Ga~--------~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL-GFD--------VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCC--------EEEeccccccHHHHHHHhCCC
Confidence 456788988884 578888888876555799999999988888653 210 00111110 11110 01124
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+|+|+-.-. . ..+..+.+.|++||+++..
T Consensus 207 gvdvv~d~~G-------~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDNVG-------G--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEECCC-------H--HHHHHHHHHhCcCcEEEEe
Confidence 6999885322 1 3457788899999999975
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=89.74 E-value=3.7 Score=36.47 Aligned_cols=96 Identities=20% Similarity=0.096 Sum_probs=59.6
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+||-+||| .|..+..+++....+|++++.++..++.+++.... .-+.....+... . ..+.+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~-~-~~~~~d~ 228 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGAD---------EVVDSGAELDEQ-A-AAGGADV 228 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCc---------EEeccCCcchHH-h-ccCCCCE
Confidence 4567789989987 77777777766555799999999998888543211 000000000000 0 1246898
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+.+..- . ..+..+.+.|+++|.++...
T Consensus 229 vi~~~~~------~--~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVS------G--AAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCc------H--HHHHHHHHhcccCCEEEEEC
Confidence 8854220 1 35677788999999988763
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.36 Score=41.18 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=33.5
Q ss_pred eEEEcCCCCC--CCCCCceeEEEecchhc----c-----CC----hhhHHHHHHHHHhcCCCCcEEEE
Q 023288 215 NFFCVPLQDF--TPETGRYDVIWVQWCIG----H-----LT----DDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 215 ~~~~~d~~~~--~~~~~~fD~Iv~~~~l~----~-----~~----~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+++++|..+. .++++++|+|+..-... . +. .+-+..++.+++|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3455555443 35567888888663221 0 00 01245789999999999998876
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=89.69 E-value=2.2 Score=37.93 Aligned_cols=86 Identities=21% Similarity=0.136 Sum_probs=54.5
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
++.+||=+||| .|.++..+++... ..|.++|.++..++.+.+... + +..+. ....||+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~------------i-----~~~~~--~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV------------L-----DPEKD--PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc------------c-----Chhhc--cCCCCCEE
Confidence 45678888876 5667776776544 357788998877776653210 0 10000 12468988
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+-+-.- . ..+..+.+.|+|||++++.-
T Consensus 205 id~~G~------~--~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 YDASGD------P--SLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EECCCC------H--HHHHHHHHhhhcCcEEEEEe
Confidence 854331 1 46778888999999999764
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=89.63 E-value=3.7 Score=35.41 Aligned_cols=93 Identities=16% Similarity=-0.012 Sum_probs=58.5
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+||-.|||. |..+..+++....+ |++++.+++..+.+++.-... .-+.. ... . .....+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~--------~~~~~-~~~---~-~~~~~~d 161 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPAD--------PVAAD-TAD---E-IGGRGAD 161 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCc--------ccccc-chh---h-hcCCCCC
Confidence 45678888888875 66666677665555 999999999888777642110 00000 000 0 1224689
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+.+-.- . ..+....+.|+++|.++..
T Consensus 162 ~vl~~~~~------~--~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASGS------P--SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccCC------h--HHHHHHHHHhcCCcEEEEE
Confidence 88853221 1 3567778889999998865
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.42 E-value=1.1 Score=39.98 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=70.4
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
-.+.+|.=||.| .|..+..++.-....|+.+|+|..-+......+.. ++...-.....+...-.+.|+|
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----------rv~~~~st~~~iee~v~~aDlv 235 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----------RVHTLYSTPSNIEEAVKKADLV 235 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----------eeEEEEcCHHHHHHHhhhccEE
Confidence 355678888988 57777777766666899999999888887776643 3555555544443223478999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
|..-.+---. ...-..+++...+|||+.++=
T Consensus 236 IgaVLIpgak--aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 236 IGAVLIPGAK--APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEecCCC--CceehhHHHHHhcCCCcEEEE
Confidence 9765554444 344678899999999998764
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.36 Score=45.30 Aligned_cols=104 Identities=12% Similarity=0.072 Sum_probs=74.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 228 (284)
..++.+|||.=|++|.-+...+.... .+|++-|.++..++..+++...++. ...++....|+..+- ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----~~ive~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----EDIVEPHHSDANVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----hhhcccccchHHHHHHhccccc
Confidence 34678999999999999988887543 3899999999999999988876432 122334444544321 123
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
..||+|-.-.. . ....+|..+.+.++.||.++++-
T Consensus 182 ~~FDvIDLDPy----G--s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 182 KFFDVIDLDPY----G--SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cccceEecCCC----C--CccHHHHHHHHHhhcCCEEEEEe
Confidence 58998864322 1 22378899999999999999973
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=88.47 E-value=1.8 Score=39.27 Aligned_cols=99 Identities=16% Similarity=-0.020 Sum_probs=59.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C--CCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F--TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~--~~~~~ 229 (284)
..++.+||=.||| .|..+..+++.... .|+++|.++.-++.+++.-.. .-++....+..+ + .....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~---------~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT---------HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------eEEcCCCcCHHHHHHHHhCCC
Confidence 4567899988875 35566666665444 599999999999988654211 001111111100 0 01123
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+|+|+-.-. . . ..+....+.+++||++++.-.
T Consensus 245 g~d~vid~~g-----~-~--~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVIDAVG-----R-P--ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEECCC-----C-H--HHHHHHHHHhccCCEEEEECC
Confidence 5898884322 1 1 456677889999999988643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.3 Score=43.99 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=63.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-------C-----C-cEEEEeCC---HHHHHHHHHH-----------cCC-----C
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-------F-----N-EVDLLEPV---SHFLDAARES-----------LAP-----E 203 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-------~-----~-~v~gvD~S---~~~l~~ar~~-----------~~~-----~ 203 (284)
.+..+|+|+|-|+|......++.. . . +++.+|.- .+.+..+-+. ... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345899999999999766555322 1 1 68888853 3333333221 111 0
Q ss_pred CCCC---CCCCcceeEEEcCCCCCCC-CCCceeEEEecc-hhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 204 NHMA---PDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 204 ~~~~---~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv~~~-~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
|+.. ..-....++..+|+.+.-. -...||+|+.-. +-...|+-=-..+|+.++++++|||++.-
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 1100 0001245566677755321 125699999653 22222211134799999999999999874
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.7 Score=38.90 Aligned_cols=98 Identities=20% Similarity=0.049 Sum_probs=57.6
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-C-CCCCc
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-PETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~ 230 (284)
..++.+||=+|+| .|..+..+++....+ |++++.++.-++.+++.-.. ..++....+...+ . .....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~---------~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD---------FVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC---------EEEcCCcchHHHHHHHhCCCC
Confidence 4567888888875 445555566554445 99999999988888654221 0011111110001 0 11236
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+|+-...- . ..+....+.|+++|.+++.-
T Consensus 232 ~d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSGN------T--AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCCC------H--HHHHHHHHHhhcCCEEEEEc
Confidence 8999854320 1 35567778899999998753
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=88.31 E-value=2.2 Score=36.94 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=60.0
Q ss_pred CCCceEEEeeccccHHHHHHH---HhC---CCcEEEEeCC--------------------------HHHHHHHHHHcCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLL---IRY---FNEVDLLEPV--------------------------SHFLDAARESLAPE 203 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~---~~~---~~~v~gvD~S--------------------------~~~l~~ar~~~~~~ 203 (284)
.-++.|+|+||=.|..+..+. +.. ..+++++|-= ...++..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 456789999999998765432 222 1257777621 12456666777665
Q ss_pred CCCCCCCCcceeEEEcCCCCC-C-CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 204 NHMAPDMHKATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 204 ~~~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++. ..++.++.+.+.+. + .+..++-++..-.-+. +.....|..++..|.|||+++|-|-
T Consensus 153 gl~----~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 153 GLL----DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TTS----STTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCC----cccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 432 35788998887543 2 1223444443322221 1345789999999999999999664
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=88.31 E-value=5.1 Score=35.83 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=57.6
Q ss_pred ceEEEeec--cccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCceeE
Q 023288 159 LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDV 233 (284)
Q Consensus 159 ~~VLDiGc--GtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~fD~ 233 (284)
.+||=.|+ |.|..+..+++.... +|++++.+++..+.+++.+... .-+.....++.+ + ....+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~--------~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD--------AAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc--------EEEECCCCCHHHHHHHHCCCCceE
Confidence 78888885 578888878876554 6999999998888887644321 001111111110 0 011246999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+..-. . ..+..+.+.|+++|.++..
T Consensus 228 vid~~g-------~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVG-------G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCC-------c--HHHHHHHHHhccCCEEEEE
Confidence 985322 1 2346778899999999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=88.03 E-value=2.8 Score=37.85 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=35.0
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~ 199 (284)
..++.+||=+|||. |..+..+++....+|+++|.++..++.+++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 45678999999964 6666767765544799999999999988664
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=87.68 E-value=9.5 Score=32.17 Aligned_cols=118 Identities=20% Similarity=0.227 Sum_probs=68.1
Q ss_pred ccHHHHHHHHHhhcCCccCCCCceEEEeeccccH--HHHHH--HHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCC
Q 023288 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNL--LIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (284)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~--~s~~l--~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~ 211 (284)
+..+|+.-+.. ......|+++.|+.|. .+..| +.+ -..+++.|-+.+.-+...++.+...++ .
T Consensus 28 ~~aEfISAlAA-------G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----~ 95 (218)
T PF07279_consen 28 GVAEFISALAA-------GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----S 95 (218)
T ss_pred CHHHHHHHHhc-------cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----c
Confidence 34455555432 3455678899766442 23333 322 222689998888888888887766554 2
Q ss_pred cceeEEEcCC-CCCCCCCCceeEEEecchhccCChhhHH-HHHHHHHhcCCCCcEEEEEeccCC
Q 023288 212 KATNFFCVPL-QDFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 212 ~~~~~~~~d~-~~~~~~~~~fD~Iv~~~~l~~~~~~~~~-~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
..++|+.++. +++...-...|+++...-. ++.. .+|+.+. +.|.|.+++..|...
T Consensus 96 ~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 96 DVVEFVVGEAPEEVMPGLKGIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred ccceEEecCCHHHHHhhccCCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 3467777764 3322222357777643321 2433 4555432 556788999888765
|
The function of this family is unknown. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=87.57 E-value=1.9 Score=39.41 Aligned_cols=99 Identities=16% Similarity=-0.038 Sum_probs=58.8
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCc
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~ 230 (284)
..++.+||=.|+| .|.++..+++.... .|+++|.++.-++.+++.-... -++....+..+ + ....+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA---------TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce---------EeCCCchhHHHHHHHHhCCC
Confidence 4567788888876 35566666655443 6999999999999887642210 01111111100 0 011236
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|+|+-+-. . . ..+..+.+.|++||.+++.-.
T Consensus 260 ~d~vid~~G--~----~--~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 260 VDYAFEMAG--S----V--PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCEEEECCC--C----h--HHHHHHHHHHhcCCEEEEEcc
Confidence 898885422 0 1 466777889999999987643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=87.19 E-value=3.5 Score=36.96 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=61.3
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCC-C-CCCCC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~ 229 (284)
..++.+||=.|+ |.|..+..+++....+|++++.++...+.+++.+... ..+.+... +..+ + ....+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD--------DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc--------eeEEcCCcccHHHHHHHhCCC
Confidence 557789998886 5777777787765557999999998888887744321 00111110 1110 0 01124
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+|+|+-.-. . ..+..+.+.|+++|.++..
T Consensus 221 gvd~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG-------G--KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCcEEEEe
Confidence 6898885322 2 4567788999999999875
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=86.98 E-value=7.8 Score=34.24 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=59.9
Q ss_pred CCCCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-C-CCCCCc
Q 023288 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~ 230 (284)
..++.+||=.| .|.|..+..+++....+|++++.+++-.+.+++. ... .-++....++.+ + ....+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~-Ga~--------~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL-GFD--------AVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCC--------EEEeCCCccHHHHHHHHCCCC
Confidence 45677888887 4577777777776555799999999888888763 210 001111111100 0 011246
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+|+-.-. . ..+....+.|+++|.++..
T Consensus 212 vd~vld~~g-------~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG-------G--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC-------H--HHHHHHHHhhccCCEEEEE
Confidence 898885322 2 4567888899999999865
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.92 E-value=0.31 Score=44.89 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=50.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~ 223 (284)
.+++..|.|+=||.|-++..++..++ .|++-|.+++++++.+.+++.+... ..++..+..|..+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccc----hhheeeecccHHH
Confidence 45778999999999999999887775 5999999999999999998765432 2235555555443
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.81 E-value=3.2 Score=37.40 Aligned_cols=100 Identities=19% Similarity=0.133 Sum_probs=65.5
Q ss_pred CCCCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCC-C
Q 023288 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPET-G 229 (284)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~-~ 229 (284)
.+++.+||=.| .|.|.++..|++.....++++--|++-.+.+++.... ..+++...|+.+- .... .
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd---------~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD---------HVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC---------EEEcCCcccHHHHHHHHcCCC
Confidence 45688899888 4567888888877653577887888777777666443 1233333333221 1122 3
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.+|+|+..-. . ..+.+....|+++|.++..-...
T Consensus 211 gvDvv~D~vG-------~--~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 211 GVDVVLDTVG-------G--DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CceEEEECCC-------H--HHHHHHHHHhccCCEEEEEecCC
Confidence 6999986544 2 56777888999999999876544
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.76 E-value=6.6 Score=34.20 Aligned_cols=98 Identities=15% Similarity=0.022 Sum_probs=58.6
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE--cCCCCCCCCCCce
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQDFTPETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~f 231 (284)
.++.+||=+|+| .|..+..+++.... .|+++|.++.-++.+++.-... -+.... ..+... .....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~~~-~~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA---------LAEPEVLAERQGGL-QNGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE---------ecCchhhHHHHHHH-hCCCCC
Confidence 467789888875 45555656655443 4899999998888887643210 000000 000011 112358
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|+-.-. . . ..++.+.+.|+|+|.+++.-..
T Consensus 189 d~vid~~G-----~-~--~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 189 DVALEFSG-----A-T--AAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CEEEECCC-----C-h--HHHHHHHHHhcCCCEEEEeccC
Confidence 98875332 0 1 4677788899999999987543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=86.73 E-value=3.9 Score=37.70 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=64.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHh------CCC--cEEEEeC----CHHHHHHHHHHcCCCCCCCCCCCcceeEEE---c
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR------YFN--EVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFC---V 219 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~------~~~--~v~gvD~----S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~---~ 219 (284)
..+..+|+|+|.|.|..-..|++. +++ ++|+|+. +..-++.+.+++....-. .+...+|.. .
T Consensus 108 g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~---lgv~fef~~v~~~ 184 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARS---LGVPFEFHPVVVE 184 (374)
T ss_pred cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHH---cCccEEEEecccC
Confidence 446779999999999765555542 222 8999999 777787777665432110 012233433 2
Q ss_pred CCCCCC-----CCCCceeEEEecchhccCChhh------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 220 PLQDFT-----PETGRYDVIWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 220 d~~~~~-----~~~~~fD~Iv~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+++++. ..++..=+|-+...+||+.++. ...+|+ ..+.|+|.-.+ ++|.
T Consensus 185 ~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv-~~E~ 244 (374)
T PF03514_consen 185 SLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVV-LVEQ 244 (374)
T ss_pred chhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEE-EEee
Confidence 343332 2334444555677789986322 223554 45578999544 4443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.70 E-value=7.1 Score=34.61 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=59.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~ 228 (284)
..++.+||-+|+| .|..+..+++....+ +++++.++...+.+++.... .++..+-... ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT------------ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe------------EEecCCCCCHHHHHHhcC
Confidence 4567899999876 366666666665544 89999999988888553211 1111110000 0123
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
..+|+|+.+..- . ..+..+.+.|+++|.++...
T Consensus 225 ~~vd~v~~~~~~------~--~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEATGV------P--KTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECCCC------h--HHHHHHHHHHhcCCEEEEEe
Confidence 468999864220 1 56777888999999998753
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.23 E-value=1 Score=42.40 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=68.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-------CCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-------TPET 228 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~~ 228 (284)
....+|-+|-|.|.+...+..... ..+++|++.|.|++.|+.++....- .+....-.|..++ ..++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~------~r~~V~i~dGl~~~~~~~k~~~~~ 368 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS------DRNKVHIADGLDFLQRTAKSQQED 368 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh------hhhhhhHhhchHHHHHHhhccccc
Confidence 456788899999998886654444 3899999999999999998754211 1112222222111 1244
Q ss_pred CceeEEEe----cchhccC--Chhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWV----QWCIGHL--TDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~----~~~l~~~--~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
..||++.. .. .|.+ ++.. -..++..+...|.|.|.+++-
T Consensus 369 ~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 369 ICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred cCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 67999873 22 3333 2222 346889999999999999774
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=86.21 E-value=6.3 Score=29.79 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=57.0
Q ss_pred CCceEEEeeccccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEE
Q 023288 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~I 234 (284)
...+|.|+|-|.=. .+..|.++++. |+++|+++. +. ...++++..|+++-... -...|+|
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~-------~a----------~~g~~~v~DDitnP~~~iY~~A~lI 74 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK-------TA----------PEGLRFVVDDITNPNISIYEGADLI 74 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc-------cC----------cccceEEEccCCCccHHHhhCccce
Confidence 34599999988653 45556666675 999999875 11 13477899999874321 1357888
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++... ++++...+-.+++.++ -.+++.
T Consensus 75 YSiRp-----ppEl~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 75 YSIRP-----PPELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred eecCC-----CHHHHHHHHHHHHhhC--CCEEEE
Confidence 87665 4566677777776554 344443
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.15 E-value=1.3 Score=40.67 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=54.1
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|+=+|+| .|..+...+.....+|+.+|.++.-++.+...+.. .+.....+...+.-.-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEEE
Confidence 45679999998 56666666655444799999998877766555432 01111111111110013689999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
..-.....+.+. -+-+++.+.++||++++-
T Consensus 236 ~a~~~~g~~~p~--lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 236 GAVLIPGAKAPK--LVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EccccCCCCCCc--CcCHHHHhcCCCCCEEEE
Confidence 753221111011 123555566899987665
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=86.04 E-value=5.4 Score=35.53 Aligned_cols=106 Identities=12% Similarity=0.107 Sum_probs=72.1
Q ss_pred CceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---------C
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------P 226 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~ 226 (284)
-..|+-+|||-=.-...+ .... .|.=+|. |+.++.=++.+.+.+.. .....+++..|+.+-. +
T Consensus 93 ~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~---~~~~~~~Va~Dl~~~dw~~~L~~~G~ 166 (297)
T COG3315 93 IRQVVILGAGLDTRAYRL--DWPKGTRVFEVDL-PEVIEFKKKLLAERGAT---PPAHRRLVAVDLREDDWPQALAAAGF 166 (297)
T ss_pred ccEEEEeccccccceeec--CCCCCCeEEECCC-cHHHHHHHHHhhhcCCC---CCceEEEEeccccccchHHHHHhcCC
Confidence 457999999853322222 2232 5666775 56666666666654321 1225778888887432 2
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
....-=++++-+++.|++.+...++|..+...+.||-.+++..
T Consensus 167 d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 167 DRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 2344567889999999999999999999999999998888764
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=3.3 Score=37.26 Aligned_cols=98 Identities=17% Similarity=0.059 Sum_probs=56.3
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC---CCCCCCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~ 229 (284)
..++.+||=.||| .|..+..+++.... .|++++.++.-++.+++.-... -++....+ +... ....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~---------~i~~~~~~~~~~~~~-~~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ---------TFNSREMSAPQIQSV-LREL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCce---------EecCcccCHHHHHHH-hcCC
Confidence 4567788888875 44555556655444 4789999999888876532110 01100001 0011 1123
Q ss_pred cee-EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYD-VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD-~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+| +|+-+-. . ...+....+.|++||.+++.-.
T Consensus 228 ~~d~~v~d~~G-----~---~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 228 RFDQLILETAG-----V---PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCeEEEECCC-----C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 577 5553221 1 1477788899999999998754
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.57 E-value=11 Score=33.60 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=58.8
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC-------CCCCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-------LQDFT 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~-v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d-------~~~~~ 225 (284)
..++.+||-.|+|. |..+..+++....+ |++++.++...+.+++. ... .-+.....+ +.+.
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~--------~vi~~~~~~~~~~~~~~~~~- 229 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT--------HTVNVRTEDTPESAEKIAEL- 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc--------EEeccccccchhHHHHHHHH-
Confidence 45677888877764 66777777665555 89999888888877653 210 001111111 1111
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.....+|+|+.+... . ..+....+.|+++|.++..
T Consensus 230 ~~~~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 230 LGGKGPDVVIECTGA------E--SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred hCCCCCCEEEECCCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 122459999864331 1 3677788899999998865
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=84.51 E-value=4.1 Score=36.39 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=57.8
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CCCCCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~ 228 (284)
..++.+||-.|+| .|..+..+++... ..+++++.++...+.+++.-.. .-+.....++ ... .+.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~---------~vi~~~~~~~~~~i~~~-~~~ 234 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT---------DIINPKNGDIVEQILEL-TGG 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc---------EEEcCCcchHHHHHHHH-cCC
Confidence 4467788887775 4667776776655 3688898888888777654211 0011111111 111 122
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.+|+|+....- . ..+....+.|+++|.++..
T Consensus 235 ~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF------E--ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 469998854221 1 4677788899999998865
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=84.50 E-value=4.2 Score=36.26 Aligned_cols=97 Identities=20% Similarity=0.044 Sum_probs=60.8
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC----CCCCCCCCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~~~ 229 (284)
..++.+||-.|+|. |..+..+++....+++++..+++..+.+++.... .-+.....+ +... .+..
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~---------~v~~~~~~~~~~~l~~~-~~~~ 226 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD---------DTINVGDEDVAARLREL-TDGE 226 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC---------EEecCcccCHHHHHHHH-hCCC
Confidence 45677899998874 7777777776555799998899888888654211 001111111 1111 1224
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+|+|+.+..- ...+..+.+.|+++|.++...
T Consensus 227 ~vd~vld~~g~--------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 227 GADVVIDATGN--------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 58999865320 145777888999999988653
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=83.68 E-value=4 Score=33.37 Aligned_cols=94 Identities=10% Similarity=0.041 Sum_probs=55.6
Q ss_pred ceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---------CCC
Q 023288 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PET 228 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~ 228 (284)
..|+.+|||-=.....+.... ...++-+|. |++++.-++.+...+. ....+.+++.+|+.+.. +..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGA---RPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHH---HHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcc---cCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 389999999877777676543 225666665 4455555555443210 00123567888988532 234
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHH
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAK 256 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~ 256 (284)
+.--++++-.++.|++.++...+++.++
T Consensus 156 ~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp TSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 5667888889999999888888887763
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.27 E-value=9.8 Score=33.33 Aligned_cols=84 Identities=13% Similarity=-0.020 Sum_probs=50.7
Q ss_pred eEEEeeccc--cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+|.=||+|. |.++..+.+.+. +|+++|.++..++.+.+... +.....+... -...|+|+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~------------~~~~~~~~~~----~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL------------VDEASTDLSL----LKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC------------cccccCCHhH----hcCCCEEEEc
Confidence 466678884 455665555554 59999999988888765411 1111111111 1357888876
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEE
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~l 265 (284)
-. ......+++++...++|+-.+
T Consensus 65 vp-----~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 65 LP-----IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CC-----HHHHHHHHHHHHHhCCCCcEE
Confidence 54 334556788888888876433
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=83.21 E-value=5.4 Score=37.18 Aligned_cols=88 Identities=10% Similarity=-0.036 Sum_probs=53.0
Q ss_pred CCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
-.+.+|+=+|+|. |......++....+|+++|.++.-...+... |. .+ .++.+. . ...|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G~---------~v--~~leea-l--~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----GF---------RV--MTMEEA-A--KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----CC---------Ee--CCHHHH-H--hcCCEE
Confidence 3578999999995 5555555555445799999988654444321 11 11 122221 1 246888
Q ss_pred EecchhccCChhhHHHHHH-HHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~-~~~r~LkpGG~lii~e 269 (284)
+..-. . ..++. +....+|+|++++..-
T Consensus 255 ItaTG-------~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 255 ITATG-------N-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred EECCC-------C-HHHHHHHHHhcCCCCcEEEEEC
Confidence 76432 1 23444 4788999999988763
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.43 E-value=6.1 Score=35.94 Aligned_cols=95 Identities=15% Similarity=0.028 Sum_probs=52.7
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~ 233 (284)
.++.+||=.||| .|..+..+++....++++++.++.....+.+.+... .-+.... ..+... .+.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~--------~vi~~~~~~~~~~~---~~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGAD--------SFLVSTDPEKMKAA---IGTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCc--------EEEcCCCHHHHHhh---cCCCCE
Confidence 456788888876 556666666655556888887765443332222210 0000000 011111 124788
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+-.-. . . ..+..+.+.|++||.+++.-
T Consensus 251 vid~~g-----~-~--~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 251 IIDTVS-----A-V--HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEECCC-----C-H--HHHHHHHHHhcCCcEEEEeC
Confidence 884332 1 1 36777888999999998764
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=82.06 E-value=7.3 Score=35.68 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=58.0
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc--CCCC-C-CCCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~--d~~~-~-~~~~ 228 (284)
..++.+||=+||| .|..+..+++.... +|+++|.++.-++.+++.-.. ..++.... ++.+ + ....
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~---------~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT---------DFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc---------EEEecccccchHHHHHHHHhC
Confidence 5577899999886 45555556655444 699999999999988763211 00111100 0100 0 0111
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e~ 270 (284)
+.+|+|+-.-. . . ..+......+++| |.+++.-.
T Consensus 267 ~g~dvvid~~G-----~-~--~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 267 GGVDYSFECAG-----N-V--EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCCCEEEECCC-----C-h--HHHHHHHHhhhcCCCEEEEEcc
Confidence 26898885433 1 1 4666777788897 98877543
|
|
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=81.95 E-value=1.8 Score=35.73 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=52.2
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
...+.+||-+|.= ||.++..++.. ..+|+.+|+.|.|-... ..+++|... ..+.++.+|+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~l--------------p~~v~Fr~~----~~~~~G~~Dl 102 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFL--------------PNNVKFRNL----LKFIRGEVDL 102 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcC--------------CCCccHhhh----cCCCCCceeE
Confidence 3466789999986 88888888866 44699999999775433 233445443 3355689999
Q ss_pred EEecchhccCChh
Q 023288 234 IWVQWCIGHLTDD 246 (284)
Q Consensus 234 Iv~~~~l~~~~~~ 246 (284)
|+-.-.+..+.++
T Consensus 103 ivDlTGlGG~~Pe 115 (254)
T COG4017 103 IVDLTGLGGIEPE 115 (254)
T ss_pred EEeccccCCCCHH
Confidence 9988887777644
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.60 E-value=4.8 Score=35.47 Aligned_cols=87 Identities=18% Similarity=0.030 Sum_probs=54.2
Q ss_pred ceEEEeecc--ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeEE
Q 023288 159 LVALDCGSG--IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVI 234 (284)
Q Consensus 159 ~~VLDiGcG--tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~I 234 (284)
.+|+=+|.| .|.++..+...+.. .+++.|.+...++.+.+.--. ... .+.. .......|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~-------------d~~~~~~~--~~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVI-------------DELTVAGL--AEAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcc-------------cccccchh--hhhcccCCEE
Confidence 467777776 45666666556665 589999998888877643211 111 1110 0112457999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~l 265 (284)
+.+-.+. ....+++++...|+||..+
T Consensus 69 ivavPi~-----~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 69 IVAVPIE-----ATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred EEeccHH-----HHHHHHHHhcccCCCCCEE
Confidence 8776554 4447888888888888654
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.09 E-value=12 Score=33.29 Aligned_cols=104 Identities=14% Similarity=0.041 Sum_probs=59.1
Q ss_pred ceEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 159 LVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 159 ~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++|+=+||| .|.++..|.+.+ ..|+.++-+++.++..++.- |+..........+ ...... +.+.+.||+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r~~~~~~~i~~~~---Gl~i~~~g~~~~~-~~~~~~-~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG-LPVRLILRDRQRLAAYQQAG---GLTLVEQGQASLY-AIPAET-ADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC-CCeEEEEechHHHHHHhhcC---CeEEeeCCcceee-ccCCCC-cccccccCEEEE
Confidence 478899998 344555555444 46999999876666665421 1100000000111 111111 112347999886
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+-=-+ +...+++.+...+.|+..+++.-|-..
T Consensus 77 ~vK~~-----~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 77 ACKAY-----DAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred ECCHH-----hHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 54322 445788999999999998888766443
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.33 E-value=1.7 Score=36.71 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=44.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (284)
.+.-|.+||.|.|.+++.++..+..++..|+..+.++.-.+-..+.. ......+..|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa-------~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA-------PGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC-------CcceEEecccccee
Confidence 45679999999999999999888888999999988877665544332 22355555665443
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=80.13 E-value=6.6 Score=34.22 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhC------CCcEEEEeCCH
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVS 190 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~------~~~v~gvD~S~ 190 (284)
.+...++|+|||.|.++.++.... ...++.||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 466789999999999999888754 23789999754
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.10 E-value=7 Score=36.65 Aligned_cols=87 Identities=13% Similarity=0.016 Sum_probs=52.0
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+.+|+=+|+|. |......++....+|+.+|.++.....+... | .++ .++.+. . ..+|+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----G---------~~v--~~l~ea-l--~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----G---------FRV--MTMEEA-A--ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----C---------CEe--cCHHHH-H--hCCCEEE
Confidence 577999999984 4444444444444799999998665444321 1 111 122221 1 2579998
Q ss_pred ecchhccCChhhHHHHHH-HHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~-~~~r~LkpGG~lii~e 269 (284)
..-. . ..++. .....+|+|++++..-
T Consensus 273 ~aTG-------~-~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 273 TATG-------N-KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ECCC-------C-HHHHHHHHHhcCCCCCEEEEcC
Confidence 6532 1 13454 6788899999888763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 284 | ||||
| 2ex4_A | 241 | Crystal Structure Of Human Methyltransferase Ad-003 | 1e-40 | ||
| 1xtp_A | 254 | Structural Analysis Of Leishmania Major Lmaj004091a | 6e-36 |
| >pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In Complex With S-adenosyl-l-homocysteine Length = 241 | Back alignment and structure |
|
| >pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 204 bits (519), Expect = 2e-65
Identities = 80/217 (36%), Positives = 115/217 (52%), Gaps = 18/217 (8%)
Query: 61 PKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASV 120
K S + +SG D++GK +++ +EMW+ ++ G+ + + WY + + YW V A+V
Sbjct: 7 SKEASSRNLPISGRDTNGKTYRSTDEMWKAEL--TGDLYDPEKGWYGKALEYWRTVPATV 64
Query: 121 DGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180
GVLGG +V++VDI+GS F+ L A LDCG+GIGRITKNLL + +
Sbjct: 65 SGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA--------LDCGAGIGRITKNLLTKLY 116
Query: 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCI 240
DLLEPV H L+ A+ LA F ++ T YD+I +QW
Sbjct: 117 ATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETATLPPNTYDLIVIQWTA 168
Query: 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 277
+LTD DFV FFK + L P G+ KEN + F
Sbjct: 169 IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF 205
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 1e-56
Identities = 78/186 (41%), Positives = 108/186 (58%), Gaps = 9/186 (4%)
Query: 93 GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
G E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 18 GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 77
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
+ L DCG+GIGRITK LL+ F EVD+++ FL A+ L E +
Sbjct: 78 TGTSCAL---DCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------R 128
Query: 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272
N+FC LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A
Sbjct: 129 VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188
Query: 273 RSGTFL 278
+ G L
Sbjct: 189 QEGVIL 194
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 20/129 (15%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L L + A+ L+ G G G + +L F +VD + A
Sbjct: 31 SATLTKFLGELPAGAK------ILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASR 83
Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 258
+ YD +W C+ H+ D+ K
Sbjct: 84 ------------RLGRPVRTMLFHQL-DAIDAYDAVWAHACLLHVPRDELADVLKLIWRA 130
Query: 259 LKPGGFFVL 267
LKPGG F
Sbjct: 131 LKPGGLFYA 139
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 3e-09
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 2/107 (1%)
Query: 162 LDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
+D G G G + +LL + ++ L A + L + + K+ +
Sbjct: 726 VDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG 785
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
+ +F D+ I H+ +D F ++ P V
Sbjct: 786 SILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 4e-09
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ +G+GR+T L + EV LE + L A R+ LA D+ +
Sbjct: 87 LELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAP---ADVRDRCTLVQGDM 142
Query: 222 QDFTPETGRYD-VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
F + R+ V+ I L + D + + L+PGG F+L
Sbjct: 143 SAFALD-KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL 188
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 9e-09
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 19/140 (13%)
Query: 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198
A L+ L + L+ SG G T++L V L+ + + A
Sbjct: 35 PAALERLRAGN-IRGD------VLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR 86
Query: 199 SLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVG 258
F L D+TP+ ++D ++ + H+ DD F +F++ +
Sbjct: 87 HGLD----------NVEFRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRFEAFWESVRSA 135
Query: 259 LKPGGFFVLKENIARSGTFL 278
+ PGG +
Sbjct: 136 VAPGGVVEFVDVTDHERRLE 155
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 2e-08
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 2/106 (1%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + LL + F ++ ++ L+ A++ L + + K + F
Sbjct: 34 IDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKRISLFQSS 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
L YD V I HL ++ +F K +P V
Sbjct: 93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIV 138
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 3e-08
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD GSG GR T +L +++ LEP + ++ AR++ H + F
Sbjct: 45 ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQT-----------HPSVTFHHGT 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ D + R+ + + + H+ + ++ ++ GG ++
Sbjct: 93 ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 6e-08
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + L + +VD + + + + EN + V
Sbjct: 36 TLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVD 88
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
L + T + +YD I + L + KPGG+ ++
Sbjct: 89 LNNLTFD-RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 134
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 6e-08
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 2/106 (1%)
Query: 162 LDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G G + K LL +F ++ ++ L+ A+E L +
Sbjct: 34 IDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ-LIQGA 92
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266
L YD V I HL +F + +P V
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-07
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
+K F++ + + R + + LD G G T L EV L+
Sbjct: 19 RIERVKAEIDFVEEIF--KEDAKREVRRV--LDLACGTGIPTL-ELAERGYEVVGLDLHE 73
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC--IGHLTDDDF 248
L AR A + + F + + + +D + + I + ++D
Sbjct: 74 EMLRVARRK-------AKERNLKIEFLQGDVLEIAFK-NEFDAV-TMFFSTIMYFDEEDL 124
Query: 249 VSFFKRAKVGLKPGGFFVL 267
F + LKPGG F+
Sbjct: 125 RKLFSKVAEALKPGGVFIT 143
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 16/139 (11%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
+VD K F+ + + LD G G +T+ L F ++
Sbjct: 16 ADVDYKKWSDFIIEKCVENNLVFDD-----YLDLACGTGNLTE-NLCPKFKNTWAVDLSQ 69
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC-IGHLTD-DDF 248
L A + C + + ++D+I ++ D DD
Sbjct: 70 EMLSEAENKFRSQGLKP-------RLACQDISNL-NINRKFDLITCCLDSTNYIIDSDDL 121
Query: 249 VSFFKRAKVGLKPGGFFVL 267
+FK LK GG F+
Sbjct: 122 KKYFKAVSNHLKEGGVFIF 140
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 4e-07
Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 12/132 (9%)
Query: 162 LDCGSGIGRITKNLL-------IRYFNEVDLLEPVSHFLDAARESLAPENHMAP---DMH 211
L G G G I +L +++EP + + +E +A +++ H
Sbjct: 57 LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWH 116
Query: 212 KATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271
K T+ E ++D I + + ++ D + K L ++
Sbjct: 117 KETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTNAKMLIIVVS 174
Query: 272 ARSGTFLLSHSL 283
SG L
Sbjct: 175 GSSGWDKLWKKY 186
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 20/137 (14%)
Query: 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHF 192
D + + L+ R P A + LD G G ++ + + LE
Sbjct: 21 KDYAAEASDIADLVRSRTPEASS-----LLDVACGTGTHLEHFTKEFG-DTAGLELSEDM 74
Query: 193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW-CIGHL-TDDDFVS 250
L AR+ L DM +DF ++ + + +G+L T ++ +
Sbjct: 75 LTHARKRLPDATLHQGDM-----------RDFRLG-RKFSAVVSMFSSVGYLKTTEELGA 122
Query: 251 FFKRAKVGLKPGGFFVL 267
L+PGG V+
Sbjct: 123 AVASFAEHLEPGGVVVV 139
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 13/166 (7%)
Query: 114 EGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITK 173
++ D V G + I + F + + N + LD G+G G ++
Sbjct: 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFYGVSV-SIASVDTENPDI--LDLGAGTGLLSA 60
Query: 174 NLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232
L+ +Y L++ L+ A+ + + + E +YD
Sbjct: 61 FLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKV--------KYIEADYSKYDFE-EKYD 111
Query: 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
++ I HL D+D +KR+ LK G F+ + + F+
Sbjct: 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFI 157
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 9e-07
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + Y + + V D S+A N + +
Sbjct: 124 VLDLGCGQGRNS-----LYLSLLGY--DV-TSWDHNENSIAFLNETKEKENLNISTALYD 175
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
+ + YD I L + S K K GG+ ++
Sbjct: 176 INAANIQ-ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 42/217 (19%), Positives = 68/217 (31%), Gaps = 22/217 (10%)
Query: 57 AAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGV 116
A K E E L G + + ++ E + W G
Sbjct: 138 AGDKNKGFERYFKEARALLGYGVVVRREGPYRVALLEKEKEAPPLPSLWRAFSARI-LGA 196
Query: 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL 176
E + + G F +VD S L+ L P + ++ L G G + L
Sbjct: 197 EYTFHHLPGVFSA-GKVDP-ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLP---L 251
Query: 177 IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236
R EV +E + + ++ L N + + + E R+D+I
Sbjct: 252 ARMGAEVVGVEDDLASVLSLQKGLE-ANALKAQALHSDVDEAL------TEEARFDII-- 302
Query: 237 QWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 267
+G D +F A L+PGG F L
Sbjct: 303 -VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-06
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 20/136 (14%)
Query: 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFL 193
D A L L+ P A + LD G G ++L + V+ LE + L
Sbjct: 32 DYHREAADLAALVRRHSPKAAS-----LLDVACGTGMHLRHLADSFG-TVEGLELSADML 85
Query: 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW-CIGHL-TDDDFVSF 251
AR DM +DF+ R+ + + IGHL + +
Sbjct: 86 AIARRRNPDAVLHHGDM-----------RDFSLG-RRFSAVTCMFSSIGHLAGQAELDAA 133
Query: 252 FKRAKVGLKPGGFFVL 267
+R + P G V+
Sbjct: 134 LERFAAHVLPDGVVVV 149
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
D G G G T LL ++ EV ++ L+ A+E A + ++ +F+ +
Sbjct: 38 ADIGCGTGTATL-LLADHY-EVTGVDLSEEMLEIAQEK-------AMETNRHVDFWVQDM 88
Query: 222 QDFTPETGRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVL 267
++ + + + +L T+ D F A L GG +
Sbjct: 89 RELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
L G GR L + EV +D + LA +A +
Sbjct: 33 ILCLAEGEGRNACFLASLGY-EV-------TAVDQSSVGLAKAKQLAQEKGVKITTVQSN 84
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
L DF ++ I +C HL + + GLKPGG F+L
Sbjct: 85 LADFDIVADAWEGIVSIFC--HLPSSLRQQLYPKVYQGLKPGGVFIL 129
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
D G G G T L ++ ++ F++ E A + + A +
Sbjct: 51 ADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE-NAVKANCADR----VKGITGSM 105
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
+ + D+IW + I ++ + ++ + + LK GGF + E
Sbjct: 106 DNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKY---LKKGGFIAVSE 150
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-06
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LDCG+G ++ + + +E L A + EN+ ++ K + +P
Sbjct: 28 LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN-FSRENNFKLNISKG-DIRKLPF 85
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+D ++ I H+ +D K LKPGG +
Sbjct: 86 KD-----ESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACI 126
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 13/107 (12%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G GRI L + +V + +D A++ + L
Sbjct: 51 LDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQD-----------FPEARWVVGDL 98
Query: 222 QDFTPETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+D+I +G L +D L G V+
Sbjct: 99 SVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI 145
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-05
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
D G G G T L +V L+ +S F+D A ++ + + +
Sbjct: 51 ADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR-NARQSGLQNRVT----GIVGSM 105
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
D D+IW + I ++ + ++ +++ LK GG+ + E
Sbjct: 106 DDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKY---LKKGGYLAVSE 150
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-05
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
L+ G GIG T L + E+ ++ L+ ARE+ +A N F +P
Sbjct: 42 LEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQA-NIFSLP 100
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGTF 277
+D +D I+V + + HL ++ + K+ LKPGG + E S F
Sbjct: 101 FED-----SSFDHIFVCFVLEHLQSPEEALKSLKKV---LKPGGTITVIEGDHGSCYF 150
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 7e-05
Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 13/151 (8%)
Query: 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE 182
V + ++N + + L+ LL LD G+G + LL Y E
Sbjct: 9 VFPTYTDINSQEYRSRIETLEPLLMKYMKKRGK-----VLDLACGVGGFSF-LLEDYGFE 62
Query: 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH 242
V ++ + ARE A F + + E +D + I H
Sbjct: 63 VVGVDISEDMIRKAREY-------AKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115
Query: 243 LTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273
+ FK + LKP G F++ R
Sbjct: 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLR 146
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 9e-05
Identities = 29/119 (24%), Positives = 39/119 (32%), Gaps = 16/119 (13%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ G G G +T LL+ V +EP A+E L E F +
Sbjct: 50 LEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKE-------------FSITE 95
Query: 222 QDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
DF D I + HLTDD+ + L GG V + I
Sbjct: 96 GDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAY 154
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 15/130 (11%)
Query: 146 LSDRFPNARNNQHLVALDCGSGIGRITKNL--LIRYFNEVDLLEPVSHFLDAARESLAPE 203
+ + + +D G G G T + ++ F ++ + + + A
Sbjct: 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG- 83
Query: 204 NHMAPDMHKATNFFCVPLQDFTP------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKV 257
+PD +K +F DF + + D+I C H D + F + A
Sbjct: 84 ---SPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFE--KFQRSAYA 137
Query: 258 GLKPGGFFVL 267
L+ G +
Sbjct: 138 NLRKDGTIAI 147
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 1e-04
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 5/118 (4%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
+D G G TK L ++F V L+ L+ A + +++ +
Sbjct: 60 LIDFACGNGTQTK-FLSQFFPRVIGLDVSKSALEIAAKE-NTAANISYRLLDGLVP--EQ 115
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
E G ++ H+ + + ++ L G L E F
Sbjct: 116 AAQIHSEIGDANIYMRT-GFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFF 172
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD GSG+G + +Y ++ S+ ++ A E N+ +A +
Sbjct: 60 LDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANE-RVSGNNKII--FEANDILTKEF 116
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ +D+I+ + I L+ ++ F++ LKP G ++
Sbjct: 117 PE-----NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLI 157
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 1e-04
Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
AL G G G + V L+ L A E + A F
Sbjct: 70 ALVPGCGGGHDVVAMASPERF-VVGLDISESALAKANE-TYGSSPKAEYFS----FVKED 123
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ + P +D+I+ + + ++ K LKP G +
Sbjct: 124 VFTWRPT-ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELIT 169
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 11/108 (10%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
L+ G G T+ L + + +++ + + A + +H+ ++
Sbjct: 55 GLEIGCAAGAFTE-KLAPHCKRLTVIDVMPRAIGRACQRTKRWSHI--------SWAATD 105
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL 267
+ F+ +D+I V + +L D + L PGG V
Sbjct: 106 ILQFSTA-ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 2e-04
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G G G E ++ ++ AR +A + + +
Sbjct: 69 LDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM 128
Query: 222 QDFTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVL 267
+DVI Q+ + T + + L+PGG+F++
Sbjct: 129 DLGKE----FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 8/113 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVP 220
LD G G + L+ F V ++ L A + +
Sbjct: 62 LDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120
Query: 221 LQDFTPETGRYDVIWVQW-CIGHLTD-----DDFVSFFKRAKVGLKPGGFFVL 267
L P +D + HL D + K ++PGG V+
Sbjct: 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 6e-04
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 26/172 (15%)
Query: 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALD 163
+ EG + ++ F +DI G+ F+Q L + +D
Sbjct: 179 DAPQTVSWKLEGTDWTIHNHANVFSR-TGLDI-GARFFMQHLPENLEGEI--------VD 228
Query: 164 CGSGIGRITKNLLIRYFN-EVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPL 221
G G G I LL + +V ++ S + ++R ++ +M + + L
Sbjct: 229 LGCGNGVIGLTLLDKNPQAKVVFVD-ESPMAVASSRLNVE--TNMPEALDRCEFMINNAL 285
Query: 222 QDFTPETGRYDVIWVQWC-----IGHLTDDDFV-SFFKRAKVGLKPGGFFVL 267
P R++ + C H D+ F A+ LK G +
Sbjct: 286 SGVEPF--RFNAVL---CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 284 | |||
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.93 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.9 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.87 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.83 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.83 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.83 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.82 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.82 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.82 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.81 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.81 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.81 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.81 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.8 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.8 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.8 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.79 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.79 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.79 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.79 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.79 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.79 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.78 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.78 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.78 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.78 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.78 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.77 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.77 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.77 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.77 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.77 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.77 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.77 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.76 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.76 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.76 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.76 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.76 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.76 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.76 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.76 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.76 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.75 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.75 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.75 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.75 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.75 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.75 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.74 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.74 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.74 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.73 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.73 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.73 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.73 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.72 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.72 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.72 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.72 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.72 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.72 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.72 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.72 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.71 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.71 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.71 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.71 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.71 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.7 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.7 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.7 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.69 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.69 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.68 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.68 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.68 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.68 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.68 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.67 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.67 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.66 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.66 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.66 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.66 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.66 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.66 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.65 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.65 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.65 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.65 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.65 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.65 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.64 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.64 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.64 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.64 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.64 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.64 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.63 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.63 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.63 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.63 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.63 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.63 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.63 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.63 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.63 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.62 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.62 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.62 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.62 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.62 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.62 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.62 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.61 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.61 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.6 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.6 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.6 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.6 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.6 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.6 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.6 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.6 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.6 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.59 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.59 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.59 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.59 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.59 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.59 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.58 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.58 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.58 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.58 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.58 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.58 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.57 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.57 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.57 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.57 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.57 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.56 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.56 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.56 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.56 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.56 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.56 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.56 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.56 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.56 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.55 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.55 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.54 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.54 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.54 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.54 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.53 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.53 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.53 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.53 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.52 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.52 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.52 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.52 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.52 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.51 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.51 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.51 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.51 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.51 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.51 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.5 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.5 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.5 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.5 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.49 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.49 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.49 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.49 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.49 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.49 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.48 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.48 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.48 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.47 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.47 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.47 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.46 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.46 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.46 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.46 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.46 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.46 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.46 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.46 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.45 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.45 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.45 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.45 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.45 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.44 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.44 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.43 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.43 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.43 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.43 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.42 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.42 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.41 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.41 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.4 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.4 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.4 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.39 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.39 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.39 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.39 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.38 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.38 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.37 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.37 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.37 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.37 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.37 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.36 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.36 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.35 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.34 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.34 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.32 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.32 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.31 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.3 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.29 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.28 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.28 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.27 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.26 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.26 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.22 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.21 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.2 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.18 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.15 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.15 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.15 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.12 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.12 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.11 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.09 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.09 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.09 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.07 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.03 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.02 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.98 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.95 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.93 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.92 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.91 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.9 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.88 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.88 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.84 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.83 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.83 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.79 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.79 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.76 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.76 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.76 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.74 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.72 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.68 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.64 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.61 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.57 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.56 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.54 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.52 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.47 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.44 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.42 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.38 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.37 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.31 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.23 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.17 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.08 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.07 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.07 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.95 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.9 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.77 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.68 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.6 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.55 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.24 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.99 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.93 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.91 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.9 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.86 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.86 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.51 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.43 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.31 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.3 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.09 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.93 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.85 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.83 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.76 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.72 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.65 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.65 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.6 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.49 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.36 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.36 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.23 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.22 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.2 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.18 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 95.09 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.08 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.97 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.96 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.95 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.76 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.59 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.5 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.28 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.27 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.25 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.25 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.22 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.22 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.14 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.14 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.07 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.03 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.01 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.89 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.87 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.71 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.66 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.65 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.65 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.59 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.58 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.56 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.49 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.49 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.43 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.42 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.15 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.07 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.03 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 92.87 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.82 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.81 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.75 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.69 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 92.54 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 92.33 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.22 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 92.08 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.05 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 91.89 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.77 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 91.63 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.54 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.26 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.21 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 91.18 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.04 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.9 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.73 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 90.69 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 90.53 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 90.41 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.32 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 90.31 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 90.02 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 89.88 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 89.53 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.02 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 88.97 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 88.7 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 88.57 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 88.39 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 87.56 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 86.83 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 86.81 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 86.81 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 86.76 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 86.46 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 85.59 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 85.47 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 85.39 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 85.04 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 84.9 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 84.74 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 84.53 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 84.37 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 83.53 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 81.85 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 80.83 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 80.69 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 80.4 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 80.01 |
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-26 Score=194.93 Aligned_cols=190 Identities=40% Similarity=0.777 Sum_probs=152.7
Q ss_pred ccccccccCCCCCCcccCHHHHHHHHhcCCccchhhhhHHHHHHhhchhcccccccccccCCCccccccccccHHHHHHH
Q 023288 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145 (284)
Q Consensus 66 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (284)
|..+...|.++.|+.|.+.+++|++.+...... ....||....+||+.....++++++++.......... ...+
T Consensus 12 ~~~~~~~g~d~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 85 (254)
T 1xtp_A 12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLYD--PEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEG----SRNF 85 (254)
T ss_dssp -CCCCCCEEETTSCEESCHHHHHHHHSCSCTTC--TTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHH----HHHH
T ss_pred cccccccccCCCCcccccHHHHHHHHHhccccc--cchhhhhhhhhHHhcCCccccceecCcCccCHHHHHH----HHHH
Confidence 555678899999999999999999987653332 2235888899999999888888887776544333222 2222
Q ss_pred HHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC
Q 023288 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (284)
Q Consensus 146 ~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 225 (284)
+. .+. ..++.+|||||||+|.++..++..+..+|+++|+|+.|++.+++++.. ..++++.++|+.+++
T Consensus 86 l~-~l~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~ 153 (254)
T 1xtp_A 86 IA-SLP---GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETAT 153 (254)
T ss_dssp HH-TST---TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGGCC
T ss_pred HH-hhc---ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEccHHHCC
Confidence 22 222 456789999999999999999887766799999999999999999865 256899999999888
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+++++||+|++..+++|+++++...+++++.++|||||.+++.+++..
T Consensus 154 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 201 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST 201 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 877899999999999999877889999999999999999999987543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=180.19 Aligned_cols=164 Identities=45% Similarity=0.907 Sum_probs=130.9
Q ss_pred hhHHHHHHhhchhcccccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC
Q 023288 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (284)
Q Consensus 102 ~~~~~~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~ 181 (284)
...+|+...+||+.....+++++++|..+...+......++..++..... ..++.+|||||||+|.++..++..+..
T Consensus 27 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~ 103 (241)
T 2ex4_A 27 EKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLFR 103 (241)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred cchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhccc---CCCCCEEEEECCCCCHHHHHHHHhcCC
Confidence 34688888999999988888888777655544444555555554332211 235789999999999999988877665
Q ss_pred cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCC
Q 023288 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (284)
Q Consensus 182 ~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~Lkp 261 (284)
+|+++|+|+.|++.|++++...+ ..+++++++|+.++++++++||+|++..+++|++++++..+++++.++|||
T Consensus 104 ~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 177 (241)
T 2ex4_A 104 EVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP 177 (241)
T ss_dssp EEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred EEEEEeCCHHHHHHHHHHhhhcC------CceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999976521 246889999998888777799999999999999977788999999999999
Q ss_pred CcEEEEEeccCCC
Q 023288 262 GGFFVLKENIARS 274 (284)
Q Consensus 262 GG~lii~e~~~~~ 274 (284)
||.+++.+++...
T Consensus 178 gG~l~i~~~~~~~ 190 (241)
T 2ex4_A 178 NGIIVIKDNMAQE 190 (241)
T ss_dssp EEEEEEEEEEBSS
T ss_pred CeEEEEEEccCCC
Confidence 9999999876544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=168.97 Aligned_cols=113 Identities=14% Similarity=0.267 Sum_probs=98.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~---~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
.+++.+|||||||+|..+..+++.... +|+|+|+|+.|++.|++++...+. ..+++++++|+.+++++ +|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----~~~v~~~~~D~~~~~~~--~~ 140 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NA 140 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCTTTCCCC--SE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----CceEEEeeccccccccc--cc
Confidence 347889999999999999988875422 799999999999999999876543 45799999999998764 59
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|+|+++.++||+++++...++++++++|||||.|+++|.....
T Consensus 141 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~ 183 (261)
T 4gek_A 141 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 183 (261)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred ccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 9999999999999888889999999999999999999976543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=158.61 Aligned_cols=111 Identities=22% Similarity=0.386 Sum_probs=98.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.|++++... .+++++++|+.+++++ ++||+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~~~-~~fD~ 112 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------LKVKYIEADYSKYDFE-EKYDM 112 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------TTEEEEESCTTTCCCC-SCEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------CCEEEEeCchhccCCC-CCceE
Confidence 45678999999999999999988753 37999999999999999998762 3789999999998877 79999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|++..+++|+++++...+++++.++|||||.+++.+....+
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 153 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGE 153 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence 99999999999777778999999999999999999876544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=157.52 Aligned_cols=113 Identities=11% Similarity=-0.011 Sum_probs=92.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC----C--CCCCcceeEEEcCCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----A--PDMHKATNFFCVPLQDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~----~--~~~~~~~~~~~~d~~~~~~~~ 228 (284)
..++.+|||+|||+|..+..+++.++ +|+|+|+|+.|++.|+++....... . .....+++++++|+.++++++
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 34678999999999999999998876 6999999999999999986531000 0 000246899999999988664
Q ss_pred -CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 -~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++||+|++..+++|++.++...++++++++|||||++++.
T Consensus 99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 7899999999999999888888999999999999984443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-20 Score=153.72 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=93.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++.. .++++.++|+.+++++ ++||+|+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~d~~~~~~~-~~fD~v~ 111 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----------KEFSITEGDFLSFEVP-TSIDTIV 111 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----------TTCCEESCCSSSCCCC-SCCSEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----------CceEEEeCChhhcCCC-CCeEEEE
Confidence 4678999999999999999887754 69999999999999999875 2478999999998877 8999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+..+++|+++++...+++++.++|||||.+++.+....
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 149 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA 149 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 99999999977756699999999999999999986543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-20 Score=160.01 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=92.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCC-------CCCCC----CCCcceeEEEcCCCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE-------NHMAP----DMHKATNFFCVPLQDF 224 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~-------~~~~~----~~~~~~~~~~~d~~~~ 224 (284)
.++.+|||+|||+|..+..|++.++ +|+|||+|+.|++.|+++.... ...+. ....+++++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4678999999999999999998877 5999999999999998876410 00000 0025689999999998
Q ss_pred CCCC-CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 225 TPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 225 ~~~~-~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++++ ++||+|++..+++++++++...+++++.++|||||+|++.
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 8653 7999999999999999888889999999999999999754
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=152.40 Aligned_cols=104 Identities=20% Similarity=0.330 Sum_probs=93.6
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++. .+++++++|+.++++++++||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----------PSVTFHHGTITDLSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----------TTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----------CCCeEEeCcccccccCCCCeEEEEeh
Confidence 67999999999999999987765 6999999999999999984 34889999999988777899999999
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
.+++|++.++...+++++.++|||||.+++.+....
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 110 YSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 999999877889999999999999999999876443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-20 Score=161.45 Aligned_cols=99 Identities=20% Similarity=0.280 Sum_probs=86.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
.+.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|++ ..++++.+++++++++++++||+|++
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~------------~~~v~~~~~~~e~~~~~~~sfD~v~~ 105 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALR------------HPRVTYAVAPAEDTGLPPASVDVAIA 105 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCC------------CTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhh------------cCCceeehhhhhhhcccCCcccEEEE
Confidence 45789999999999999887554 579999999999987753 24689999999999999999999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
..++||++. ..+++++.|+|||||+|++....
T Consensus 106 ~~~~h~~~~---~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 106 AQAMHWFDL---DRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp CSCCTTCCH---HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eeehhHhhH---HHHHHHHHHHcCCCCEEEEEECC
Confidence 999999863 37999999999999999998653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=156.80 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=96.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++....+|+|+|+|+.+++.+++++...+. ..++++..+|+.+++ ++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~---~~fD~v 133 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGWEQFD---EPVDRI 133 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCC---CCeeEE
Confidence 567789999999999999998855445899999999999999999876543 357899999998765 789999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++..+++|+++++...+++++.++|||||.+++.+....
T Consensus 134 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 134 VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 999999999766888999999999999999999886543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=158.60 Aligned_cols=112 Identities=20% Similarity=0.265 Sum_probs=97.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....++ ..++++.++|+.++++++++||+|
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 154 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLEIPCEDNSYDFI 154 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEEcCcccCCCCCCCEeEE
Confidence 457789999999999999999877444799999999999999998754433 356899999999998888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++..+++|++ +...+++++.++|||||.+++.+....
T Consensus 155 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~ 191 (297)
T 2o57_A 155 WSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKE 191 (297)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EecchhhhcC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9999999998 567999999999999999999986544
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=155.83 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=98.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++....+|+|+|+|+.+++.+++++...++ ..++++.++|+.++++++++||+|
T Consensus 59 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 133 (273)
T 3bus_A 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-----ANRVTFSYADAMDLPFEDASFDAV 133 (273)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECccccCCCCCCCccEE
Confidence 457789999999999999999876656899999999999999998765443 346899999999988888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++..+++|++ +...+++++.++|||||.+++.+....
T Consensus 134 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~~ 170 (273)
T 3bus_A 134 WALESLHHMP--DRGRALREMARVLRPGGTVAIADFVLL 170 (273)
T ss_dssp EEESCTTTSS--CHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred EEechhhhCC--CHHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 9999999998 556999999999999999999986543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=154.27 Aligned_cols=112 Identities=20% Similarity=0.245 Sum_probs=99.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++.....+|+|+|+|+.|++.++++... ..++++.++|+.++++++++||+|
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~~~~~~fD~v 124 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG--------NNKIIFEANDILTKEFPENNFDLI 124 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS--------CTTEEEEECCTTTCCCCTTCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc--------CCCeEEEECccccCCCCCCcEEEE
Confidence 567789999999999999999887445799999999999999998765 256899999999998888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
++..+++|++.++...+++++.++|||||.+++.+.....
T Consensus 125 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (266)
T 3ujc_A 125 YSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE 164 (266)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred eHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 9999999997778999999999999999999999865443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=155.49 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=95.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++...+. .++++.++|+.++++++++||+|
T Consensus 35 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~l~~~~~~fD~V 107 (260)
T 1vl5_A 35 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDAEQMPFTDERFHIV 107 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC-CCCSCTTCEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEecHHhCCCCCCCEEEE
Confidence 45778999999999999998886665 799999999999999998765432 46899999999998888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+++.+++|++ +...+++++.++|||||+|++.+...+
T Consensus 108 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~~~~~~~~ 144 (260)
T 1vl5_A 108 TCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAP 144 (260)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred EEhhhhHhcC--CHHHHHHHHHHHcCCCCEEEEEEcCCC
Confidence 9999999998 666999999999999999999876543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=148.38 Aligned_cols=114 Identities=20% Similarity=0.135 Sum_probs=96.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...++... ...++++.++|+...+.+.++||+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN-QWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH-HHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc-cCcceEEEeCCcccccccCCCcCEE
Confidence 4667999999999999999887655 3899999999999999999876543100 0126899999998777666799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..+++|++++++..+++++.++|||||.++++.+
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 999999999988888999999999999998888765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=153.42 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=92.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|.++..++..+. +|+|+|+|+.+++.++++.. ..+++++++|+.++++++++||+|++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~fD~v~~ 122 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---------GPDLSFIKGDLSSLPFENEQFEAIMA 122 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---------BTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---------cCCceEEEcchhcCCCCCCCccEEEE
Confidence 677999999999999999987755 69999999999999998853 35689999999999887889999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
..+++|++ +...+++++.++|+|||.+++.+..
T Consensus 123 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 155 (242)
T 3l8d_A 123 INSLEWTE--EPLRALNEIKRVLKSDGYACIAILG 155 (242)
T ss_dssp ESCTTSSS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cChHhhcc--CHHHHHHHHHHHhCCCeEEEEEEcC
Confidence 99999998 6669999999999999999998753
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-19 Score=155.54 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=96.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|++++...++ ..++++.++|+.++ +++||+|
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~---~~~fD~v 141 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRIQGWEEF---DEPVDRI 141 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC-----SSCEEEEECCGGGC---CCCCSEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECCHHHc---CCCccEE
Confidence 567889999999999999999887446799999999999999999876544 34789999999876 5799999
Q ss_pred EecchhccCCh-------hhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~-------~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++..+++|+++ +++..+++++.++|||||.+++.+....
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred EEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 99999999943 5678999999999999999999887544
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-19 Score=151.61 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=94.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.++++... .++++.++|+.++++++++||+|
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS---------PVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC---------TTEEEEECCGGGCCCCTTCEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc---------CCeEEEEcchhhCCCCCCCeEEE
Confidence 447789999999999999999888775899999999999999999762 46899999999988878899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++..+++|++ +...+++++.++|||||.+++..
T Consensus 113 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 113 LSSLALHYIA--SFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEchhhhhhh--hHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999999997 67799999999999999999974
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=147.25 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=93.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.+++.. ..++++.++|+.++ +++++||+|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~----------~~~~~~~~~d~~~~-~~~~~~D~v 111 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGRHG----------LDNVEFRQQDLFDW-TPDRQWDAV 111 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGGGC----------CTTEEEEECCTTSC-CCSSCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHhcC----------CCCeEEEecccccC-CCCCceeEE
Confidence 34567999999999999999988755 6999999999999999821 25689999999988 667899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+++.+++|++++++..+++++.++|||||.+++.+....
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 999999999987788999999999999999999987553
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-19 Score=155.55 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=97.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....++ ..++++.++|+.+++ ++||+|
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~---~~fD~v 159 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWEDFA---EPVDRI 159 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChHHCC---CCcCEE
Confidence 567789999999999999999877334799999999999999999876543 346899999998764 689999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
++..+++|+++++...+++++.++|||||.+++.+....+
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 9999999998778899999999999999999999876543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-19 Score=151.84 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=95.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++...++ ..++++.++|+.++++ +++||+|
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~-~~~fD~V 107 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAAGYVA-NEKCDVA 107 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCTTCCC-SSCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECChHhCCc-CCCCCEE
Confidence 457789999999999999999877655799999999999999998865443 3479999999999877 6899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++|++ +...+++++.++|||||.+++.+..
T Consensus 108 ~~~~~~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 108 ACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp EEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred EECCChHhcC--CHHHHHHHHHHHcCCCeEEEEecCc
Confidence 9999999998 5669999999999999999998754
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-19 Score=147.70 Aligned_cols=115 Identities=20% Similarity=0.173 Sum_probs=95.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++...++... ...++++.++|+...+.++++||+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM-QRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH-HHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc-cCcceEEEeCcccccccccCCCCEE
Confidence 4567999999999999998886654 3899999999999999999865432100 0016899999998777667899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++|++++++..+++++.++|||||.+++..+.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 143 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK 143 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence 9999999999888889999999999999987777653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-19 Score=150.30 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=96.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.+++++...++ ..+++++++|+.++++++++||+|
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~fD~v 118 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-----ADRVKGITGSMDNLPFQNEELDLI 118 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECChhhCCCCCCCEEEE
Confidence 456789999999999999999988765899999999999999999876554 345899999999988888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++|++ ...+++++.++|||||++++.+..
T Consensus 119 ~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 119 WSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp EEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred EecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEee
Confidence 9999999983 458999999999999999999853
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-19 Score=146.77 Aligned_cols=106 Identities=16% Similarity=0.237 Sum_probs=92.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++... ..+++++++|+.+++ ++++||+|
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~~d~~~~~-~~~~fD~v 118 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKR--------WSHISWAATDILQFS-TAELFDLI 118 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTT--------CSSEEEEECCTTTCC-CSCCEEEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhccc--------CCCeEEEEcchhhCC-CCCCccEE
Confidence 45678999999999999998886654 699999999999999999876 247899999999987 56899999
Q ss_pred EecchhccCCh-hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+++.+++|+++ +++..+++++.++|||||.+++...
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 99999999985 4567889999999999999999753
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=144.13 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=94.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.++++... ..++++.++|+.++++++++||+|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~fD~v~ 112 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDVRKLDFPSASFDVVL 112 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCTTSCCSCSSCEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcchhcCCCCCCcccEEE
Confidence 46789999999999999999887765799999999999999999764 2468899999999887778999999
Q ss_pred ecchhccCC-------------hhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLT-------------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~-------------~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+..+++++. ..+...+++++.++|||||.+++.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 999998765 446789999999999999999998764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-19 Score=148.16 Aligned_cols=107 Identities=19% Similarity=0.182 Sum_probs=94.0
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecc
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~ 238 (284)
.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...+. ..++++.++|+.++++++++||+|++..
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-----NDRIQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-----cCceEEEEcCHHHCCCCcccccEEEECc
Confidence 39999999999999999877333799999999999999999766443 3478999999999888888999999999
Q ss_pred hhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 239 ~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+++|++ +...+++++.++|||||.+++.+...
T Consensus 120 ~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 120 SVFFWE--DVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp CGGGCS--CHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred hHhhcc--CHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 999997 67799999999999999999987543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.2e-19 Score=152.48 Aligned_cols=121 Identities=26% Similarity=0.295 Sum_probs=100.9
Q ss_pred HHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE
Q 023288 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (284)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~ 218 (284)
..+...+..... ..++.+|||||||+|.++..++..++ .+|+++|+|+.+++.+++++...+. .++++.+
T Consensus 23 ~~l~~~l~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~ 93 (276)
T 3mgg_A 23 ETLEKLLHHDTV---YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI------KNVKFLQ 93 (276)
T ss_dssp CHHHHHHHTTCC---CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEE
T ss_pred HHHHHHHhhccc---CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEE
Confidence 344444443332 45788999999999999999988753 3799999999999999998765432 4689999
Q ss_pred cCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 219 VPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 219 ~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
.|+.++++++++||+|+++.+++|++ +...+++++.++|||||++++.+..
T Consensus 94 ~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 94 ANIFSLPFEDSSFDHIFVCFVLEHLQ--SPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp CCGGGCCSCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccccCCCCCCCeeEEEEechhhhcC--CHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 99999888888999999999999998 5559999999999999999998753
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=145.44 Aligned_cols=102 Identities=23% Similarity=0.406 Sum_probs=90.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++.. +.+.++|+.+++ .+++||+|+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~------------~~~~~~d~~~~~-~~~~fD~v~ 107 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLG------------RPVRTMLFHQLD-AIDAYDAVW 107 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHT------------SCCEECCGGGCC-CCSCEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhcC------------CceEEeeeccCC-CCCcEEEEE
Confidence 4678999999999999999887755 69999999999999999862 457788888877 668999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+..+++|++.++...+++++.++|||||.+++....
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 999999999888899999999999999999998543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=149.82 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=95.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++.....+|+|+|+|+.|++.|++++...++ ..+++++++|+.++++++++||+|
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~i 118 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----QNRVTGIVGSMDDLPFRNEELDLI 118 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----CcCcEEEEcChhhCCCCCCCEEEE
Confidence 457889999999999999988877444899999999999999999876544 356999999999988878899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++|+. ...+++++.++|||||.+++.+..
T Consensus 119 ~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 119 WSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp EESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred EEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEee
Confidence 9999999983 458999999999999999999864
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-19 Score=149.93 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=96.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++++...+. .++++.++|+.++++++++||+|
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~v 91 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAESLPFPDDSFDII 91 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTTBCCSCTTCEEEE
T ss_pred cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC------CCeEEEecccccCCCCCCcEEEE
Confidence 56788999999999999998886654 799999999999999998754332 46889999999988888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
++..+++|++ +...+++++.++|||||.+++.+...+.
T Consensus 92 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 129 (239)
T 1xxl_A 92 TCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPE 129 (239)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred EECCchhhcc--CHHHHHHHHHHHcCCCcEEEEEEcCCCC
Confidence 9999999998 6679999999999999999999876543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=148.15 Aligned_cols=101 Identities=23% Similarity=0.273 Sum_probs=89.1
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++... +++++++|+.++ +++++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----------~v~~~~~d~~~~-~~~~~fD~v~~ 109 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----------GITYIHSRFEDA-QLPRRYDNIVL 109 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----------CEEEEESCGGGC-CCSSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----------CeEEEEccHHHc-CcCCcccEEEE
Confidence 567899999999999998886665 699999999999999998642 588999999887 45679999999
Q ss_pred cchhccCChhhHHHHHHHHH-hcCCCCcEEEEEecc
Q 023288 237 QWCIGHLTDDDFVSFFKRAK-VGLKPGGFFVLKENI 271 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~-r~LkpGG~lii~e~~ 271 (284)
..+++|++ +...+++++. ++|||||.+++.+..
T Consensus 110 ~~~l~~~~--~~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 110 THVLEHID--DPVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp ESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hhHHHhhc--CHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 99999998 5569999999 999999999998754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.3e-19 Score=153.70 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=93.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Iv 235 (284)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++...++ ..+++++++|+.+++ +.+++||+|+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~v~ 141 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGV-----SDNMQFIHCAAQDVASHLETPVDLIL 141 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CC-----GGGEEEEESCGGGTGGGCSSCEEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEEcCHHHhhhhcCCCceEEE
Confidence 467999999999999999887754 699999999999999999876543 367999999999887 6678999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..+++|++ +...+++++.++|||||.+++.+.
T Consensus 142 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 142 FHAVLEWVA--DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp EESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECchhhccc--CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 999999998 566999999999999999999864
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-19 Score=149.70 Aligned_cols=110 Identities=16% Similarity=0.032 Sum_probs=95.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC-----C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-----G 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~ 229 (284)
..++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++... .+++++++|+.+++... .
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~ 123 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA---------ANISYRLLDGLVPEQAAQIHSEI 123 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC---------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc---------cCceEEECccccccccccccccc
Confidence 45678999999999999999998777 699999999999999998743 46899999998865321 2
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
.||+|++..++||+++++...+++++.++|||||.+++.+....+
T Consensus 124 ~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 124 GDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp CSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred CccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 499999999999999888899999999999999999999876544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=144.68 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=97.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..++..+ . .+|+|+|+|+.+++.+++++...+. .++++.++|+.++++++++||
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD 108 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------KNVEVLKSEENKIPLPDNTVD 108 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECBTTBCSSCSSCEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEecccccCCCCCCCee
Confidence 4567899999999999999998876 2 3799999999999999998765332 368999999999888888999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+|++..+++|++ +...+++++.++|||||.+++.+.....
T Consensus 109 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 148 (219)
T 3dh0_A 109 FIFMAFTFHELS--EPLKFLEELKRVAKPFAYLAIIDWKKEE 148 (219)
T ss_dssp EEEEESCGGGCS--SHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred EEEeehhhhhcC--CHHHHHHHHHHHhCCCeEEEEEEecccc
Confidence 999999999998 6679999999999999999999865443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-19 Score=151.82 Aligned_cols=105 Identities=18% Similarity=0.125 Sum_probs=86.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (284)
.++.+|||||||+|..+..+++..+.++++||+|+.|++.|+++.... ..++.++.+|+.+. .+++++||.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~FD~ 131 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhC-------CCceEEEeehHHhhcccccccCCce
Confidence 478899999999999999887665668999999999999999998764 34677888887654 356788999
Q ss_pred EEe-----cchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWV-----QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~-----~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+. ...++|++ +...++++++|+|||||+|++.+
T Consensus 132 i~~D~~~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 132 ILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEEeeeecccchhhhc--chhhhhhhhhheeCCCCEEEEEe
Confidence 974 45666766 67799999999999999998854
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=143.60 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=93.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|..+..++.....+|+|+|+|+.|++.++++.... ..++++.++|+.++++++++||+|+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~ 94 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------NFKLNISKGDIRKLPFKDESMSFVY 94 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH-------TCCCCEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEECchhhCCCCCCceeEEE
Confidence 457899999999999854444444447999999999999999886532 2357899999999888778999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+..+++|++.++...+++++.++|||||.+++.+....
T Consensus 95 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 95 SYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 99999999877889999999999999999999986543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=141.54 Aligned_cols=109 Identities=20% Similarity=0.244 Sum_probs=94.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.+++++...+. .++++.++|+.++++ +++||+|+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~-~~~~D~v~ 102 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVDLNNLTF-DRQYDFIL 102 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECCGGGCCC-CCCEEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCC------CCcEEEEcchhhCCC-CCCceEEE
Confidence 3567999999999999998887754 699999999999999998754321 358899999998877 68999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+..+++|+++++...+++++.++|||||.+++.+...
T Consensus 103 ~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (199)
T 2xvm_A 103 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139 (199)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence 9999999998888999999999999999998876543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-18 Score=150.88 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=90.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++.. +++++++|+.++++ +++||+|++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~-~~~fD~v~~ 116 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-----------DAVLHHGDMRDFSL-GRRFSAVTC 116 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTTCCC-SCCEEEEEE
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----------CCEEEECChHHCCc-cCCcCEEEE
Confidence 568999999999999998886654 69999999999999999864 47899999999877 579999999
Q ss_pred cc-hhccCCh-hhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 237 QW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 237 ~~-~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
.. +++|++. ++...+++++.++|||||.|++.+...+
T Consensus 117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 155 (263)
T 3pfg_A 117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFP 155 (263)
T ss_dssp CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccCh
Confidence 98 9999964 5678999999999999999999754433
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=146.36 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=92.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++..+..+|+|+|+|+.|++.++++... .++++.++|+.++++++++||+|
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---------TGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---------SSEEEEECCGGGCCCCTTCEEEE
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---------CCceEEEcChhhccCCCCCceEE
Confidence 346789999999999999988877654799999999999999998754 35889999999888777899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..+++|++ +...+++++.++|||||.+++...
T Consensus 112 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 112 YSSLALHYVE--DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeccccccc--hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 9999999998 677999999999999999999763
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-19 Score=149.49 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=88.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (284)
.++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++.... ..+++++++|+.++ ++++++||+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~fD~ 131 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc-------CCCeEEEecCHHHhhcccCCCceEE
Confidence 467899999999999999886545548999999999999999987653 24689999999887 777789999
Q ss_pred EEe-cchh--ccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWV-QWCI--GHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~-~~~l--~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|++ .+.+ +.....+...+++++.++|||||+|++.+.
T Consensus 132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 999 5543 233333566889999999999999998753
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=150.16 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=95.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~I 234 (284)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++....+. ..++++.++|+.+.++ ++++||+|
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CccEEEEECCccccccCCCCCcCEE
Confidence 46789999999999999988877665899999999999999999876433 2468999999998876 57899999
Q ss_pred Eecchhcc--CChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGH--LTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~--~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..++|| .+.++...+++++.++|||||.+++...
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 99999998 5566788999999999999999999864
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=145.92 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=89.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD 232 (284)
..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.++++ +++.++|+.++ ++++++||
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------------~~~~~~d~~~~~~~~~~~~fD 103 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK--------------FNVVKSDAIEYLKSLPDKYLD 103 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT--------------SEEECSCHHHHHHTSCTTCBS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------------cceeeccHHHHhhhcCCCCee
Confidence 34678999999999999998887766 599999999999999875 45777887765 56678999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+|++..+++|++++++..+++++.++|||||.+++.....
T Consensus 104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 9999999999998888999999999999999999986543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=145.69 Aligned_cols=108 Identities=18% Similarity=0.068 Sum_probs=93.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++....+. ..++++.++|+.+++.. ++||+|++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~fD~v~~ 138 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPK-----AEYFSFVKEDVFTWRPT-ELFDLIFD 138 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGG-----GGGEEEECCCTTTCCCS-SCEEEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCC-----CcceEEEECchhcCCCC-CCeeEEEE
Confidence 346999999999999998875444 699999999999999999876322 35799999999997744 59999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
..+++|+++++...+++++.++|||||.+++.+..
T Consensus 139 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 139 YVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp ESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 99999999888899999999999999999998754
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-18 Score=140.76 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=88.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..+ +..+++|+|+|+.|++.++++. .++++.++|+.++++++++||+|++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcccccCCCCCCcEEEEEE
Confidence 6789999999999999876 4437999999999999999986 2378899999998888889999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
..+++|++ +...+++++.++|||||.+++.+...
T Consensus 102 ~~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 102 FTTLEFVE--DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp ESCTTTCS--CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred cChhhhcC--CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999998 66799999999999999999987543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=151.56 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=97.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..+++....+|+|+|+|+.|++.|++++...++ ..+++++++|+.++++++++||+|
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~V 189 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI-----DDHVRSRVCNMLDTPFDKGAVTAS 189 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhcCCCCCCCEeEE
Confidence 457789999999999999999877444799999999999999999876544 347999999999988888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
++..+++|++ ...+++++.++|||||.+++.+.+..+
T Consensus 190 ~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~ 226 (312)
T 3vc1_A 190 WNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNP 226 (312)
T ss_dssp EEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred EECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccc
Confidence 9999999995 568999999999999999999865443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=148.53 Aligned_cols=104 Identities=20% Similarity=0.229 Sum_probs=91.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.+++++... ..++++.++|+.++++++++||+|
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~fD~v 108 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGV-------DRKVQVVQADARAIPLPDESVHGV 108 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTS-------CTTEEEEESCTTSCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhcc-------CCceEEEEcccccCCCCCCCeeEE
Confidence 4567899999999999999888664 46999999999999999997221 357899999999988878899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++..++||++ +...+++++.++|||||.+++.
T Consensus 109 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 109 IVVHLWHLVP--DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EEESCGGGCT--THHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCchhhcC--CHHHHHHHHHHHCCCCcEEEEE
Confidence 9999999998 6679999999999999999987
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-18 Score=141.64 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=92.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+. +++++|+|+.+++.|+++.... ..+++++++|+.++++++++||+|++
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D~v~~ 109 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR-------ESNVEFIVGDARKLSFEDKTFDYVIF 109 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc-------CCCceEEECchhcCCCCCCcEEEEEE
Confidence 478999999999999998887665 7999999999999999987542 24588999999998877789999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+.++++...++...+++++.++|||||.+++.+..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99976666667889999999999999999998653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=147.87 Aligned_cols=107 Identities=12% Similarity=0.056 Sum_probs=84.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++++. +|+|+|+|+.|++.|+++.... ....++...+.......+++||+|
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~~~~~~~fD~V 114 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIPKELAGHFDFV 114 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCCGGGTTCCSEE
T ss_pred CCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccccccCCCccEE
Confidence 55778999999999999999987765 6999999999999999998652 112223222220011114689999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+++.+++|++.++...+++++.++| |||.++++..
T Consensus 115 v~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 115 LNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred EEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 9999999999888899999999999 9999999854
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=146.43 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=94.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|++++... ..++++.++|+.+++++ ++||
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~v~~~~~d~~~~~~~-~~fD 91 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-------PYDSEFLEGDATEIELN-DKYD 91 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS-------SSEEEEEESCTTTCCCS-SCEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc-------CCceEEEEcchhhcCcC-CCee
Confidence 45778999999999999998886643 37999999999999999997653 23799999999998875 6999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|++..+++|++ +...+++++.++|||||++++.+..
T Consensus 92 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 92 IAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECChhhcCC--CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 999999999998 6669999999999999999998864
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=149.20 Aligned_cols=133 Identities=16% Similarity=0.076 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCC--CCCC--------
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN--HMAP-------- 208 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~--~~~~-------- 208 (284)
..++...+...+.. ...++.+|||||||+|.++..++..++.+|+|+|+|+.|++.|++++.... ....
T Consensus 38 ~~~~~~~~~~~~~~-~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~ 116 (263)
T 2a14_A 38 LKFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE 116 (263)
T ss_dssp HHHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHh
Confidence 34554455444421 245678999999999988876666666679999999999999998764421 0000
Q ss_pred ---C----------CCccee-EEEcCCCCC-CC---CCCceeEEEecchhccCC--hhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 209 ---D----------MHKATN-FFCVPLQDF-TP---ETGRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 209 ---~----------~~~~~~-~~~~d~~~~-~~---~~~~fD~Iv~~~~l~~~~--~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
. ...++. +.++|+.+. ++ ..++||+|++++++||+. .+++..++++++++|||||.|+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 117 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 0 001233 888999874 32 246899999999999863 357789999999999999999999
Q ss_pred eccC
Q 023288 269 ENIA 272 (284)
Q Consensus 269 e~~~ 272 (284)
+...
T Consensus 197 ~~~~ 200 (263)
T 2a14_A 197 VTLR 200 (263)
T ss_dssp EESS
T ss_pred Eeec
Confidence 7543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-18 Score=147.10 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=88.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.++++. ++++.++|+.++++++++||+|
T Consensus 32 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------------~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 32 LPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------------QVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------------TEEEECCCTTSCCSCTTCBSEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------------CCEEEECchhhCCCCCCCEeEE
Confidence 45778999999999999998886544 6999999999999776542 5899999999998888899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++|++ +...+++++.++|| ||++++.+..
T Consensus 99 ~~~~~l~~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 99 ISILAIHHFS--HLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp EEESCGGGCS--SHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred EEcchHhhcc--CHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 9999999997 77799999999999 9988888754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=139.45 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=97.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+.... ...++++.+.|+..+++++++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQK-TGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSS-SSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccc-cCcceEEEEecccccCCCCCceeEEE
Confidence 3678999999999999999987755 699999999999999999877544211 12368999999999888788999999
Q ss_pred ecchhccCCh-hhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 236 ~~~~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+..+++|+++ ++...+++++.++|||||.+++.+...
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 9999999974 335589999999999999999987643
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-18 Score=147.25 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=94.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.+++++...+ .++++.++|+.+++. +++||+|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~-~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKEN-------LNISTALYDINAANI-QENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCGGGCCC-CSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcC-------CceEEEEeccccccc-cCCccEEEE
Confidence 678999999999999999987766 69999999999999999876542 268999999998776 679999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+.+++|+++++...+++++.++|||||.+++.....
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 226 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 999999998889999999999999999988875543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-18 Score=143.41 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=89.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++.. ++++.++|+.+++. +++||+|+|
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~-~~~~D~v~~ 106 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP-----------DATLHQGDMRDFRL-GRKFSAVVS 106 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT-----------TCEEEECCTTTCCC-SSCEEEEEE
T ss_pred CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC-----------CCEEEECCHHHccc-CCCCcEEEE
Confidence 567999999999999999987766 69999999999999999853 37899999998876 579999995
Q ss_pred -cchhccCCh-hhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 237 -QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 237 -~~~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
..+++|+++ ++...+++++.++|||||.+++.+...+
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 459999954 5788999999999999999999865443
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=155.92 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=94.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCC-----C-CCCCCCCcceeEEEcCCCCC--
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPE-----N-HMAPDMHKATNFFCVPLQDF-- 224 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~-----~-~~~~~~~~~~~~~~~d~~~~-- 224 (284)
..++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|++++... | + ...+++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~----~~~~v~~~~~d~~~l~~ 156 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP----SRSNVRFLKGFIENLAT 156 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSST----TCCCEEEEESCTTCGGG
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhccccc----CCCceEEEEccHHHhhh
Confidence 34678999999999999998887642 27999999999999999886421 0 0 025789999999987
Q ss_pred ----CCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 225 ----TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 225 ----~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
++++++||+|+++.+++|++ +...+++++.++|||||+|++.+...
T Consensus 157 ~~~~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 157 AEPEGVPDSSVDIVISNCVCNLST--NKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CBSCCCCTTCEEEEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cccCCCCCCCEEEEEEccchhcCC--CHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 77788999999999999998 66799999999999999999987543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=141.06 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=90.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..++... ..+|+++|+|+.|++.++++. .++++.++|+.+++ ++++||+
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~-~~~~fD~ 98 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----------PNTNFGKADLATWK-PAQKADL 98 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----------TTSEEEECCTTTCC-CSSCEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------CCcEEEECChhhcC-ccCCcCE
Confidence 4567899999999999999988773 236999999999999999883 35789999999887 6689999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+++.+++|++ +...+++++.++|||||.+++.+.
T Consensus 99 v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 99 LYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp EEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 99999999998 677999999999999999999874
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=146.48 Aligned_cols=105 Identities=19% Similarity=0.241 Sum_probs=90.7
Q ss_pred CCCceEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCC-CCCCCCCCcceeEEEcCCCCCCCCC----
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPET---- 228 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~---- 228 (284)
.++.+|||||||+|..+..++.. ...+|+|+|+|+.|++.|++++... +. ..+++++++|+.++++++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~ 109 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-----YKNVSFKISSSDDFKFLGADSV 109 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-----CTTEEEEECCTTCCGGGCTTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----CCceEEEEcCHHhCCccccccc
Confidence 46789999999999999999864 3458999999999999999987542 11 357999999999988666
Q ss_pred --CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 --GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 --~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++||+|+++.++||+ +...+++++.++|||||.|++.
T Consensus 110 ~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 110 DKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp TSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEE
Confidence 799999999999999 5569999999999999999994
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-18 Score=150.18 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=85.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC------C--CCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD------F--TPET 228 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~------~--~~~~ 228 (284)
++.+|||||||+|..+..++..+..+|+|+|+|+.||+.|+++....+........+++|.+.|+.. + ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 4679999999999877667766666799999999999999998754221000000135677887722 2 2345
Q ss_pred CceeEEEecchhccC-ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 229 GRYDVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~-~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++||+|+|..++||+ ..++...++++++++|||||.|+++..
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 799999999999986 334677999999999999999999754
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-17 Score=146.71 Aligned_cols=111 Identities=14% Similarity=0.218 Sum_probs=97.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (284)
...+|||||||+|.++..+++.++. +++++|+ +.+++.|++++...++ ..++++..+|+.+. +++ ++||+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~p-~~~D~ 251 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG-----SERIHGHGANLLDRDVPFP-TGFDA 251 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT-----GGGEEEEECCCCSSSCCCC-CCCSE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc-----ccceEEEEccccccCCCCC-CCcCE
Confidence 5679999999999999999987654 7999999 9999999999877544 35799999999886 344 68999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|++..++|++++++...++++++++|||||+|++.|.+.++
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp EEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred EEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 99999999999888889999999999999999999976654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=143.70 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=89.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.++++. .++++.++|+.++++ +++||+|
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~-~~~fD~v 121 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----------PHLHFDVADARNFRV-DKPLDAV 121 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----------TTSCEEECCTTTCCC-SSCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----------CCCEEEECChhhCCc-CCCcCEE
Confidence 34678999999999999999887444 6999999999999999885 247799999999887 4799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
++..+++|++ +...+++++.++|||||++++.....
T Consensus 122 ~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 122 FSNAMLHWVK--EPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEcchhhhCc--CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 9999999998 66699999999999999999986543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=137.55 Aligned_cols=105 Identities=24% Similarity=0.240 Sum_probs=89.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++ +|||+|||+|.++..++..+. +|+++|+|+.|++.++++....+ .++++.++|+.++++++++||+|++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKG-------VKITTVQSNLADFDIVADAWEGIVS 100 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHT-------CCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcC-------CceEEEEcChhhcCCCcCCccEEEE
Confidence 45 999999999999998886654 69999999999999999875421 2588999999998877789999998
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+ +.|++.++...+++++.++|||||.+++.+...
T Consensus 101 ~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 101 I--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp E--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred E--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 5 456676788899999999999999999987643
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-18 Score=147.35 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=92.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD 232 (284)
.++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....+.. ....++.+..+|+.+++ +++++||
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccc--cccceeeEeecChhhCccccccCCCeE
Confidence 4668999999999999999987766 6999999999999999875221110 00245778889988776 6678999
Q ss_pred EEEec-chhccCCh-----hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQ-WCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~-~~l~~~~~-----~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++. .+++|+++ ++...+++++.++|||||++++...
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998 89999996 4588999999999999999999753
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=134.22 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=89.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++. .++++...| .++++++||+|
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----------~~v~~~~~d---~~~~~~~~D~v 79 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKF-----------DSVITLSDP---KEIPDNSVDFI 79 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHC-----------TTSEEESSG---GGSCTTCEEEE
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhC-----------CCcEEEeCC---CCCCCCceEEE
Confidence 45678999999999999998887665 7999999999999999982 357888888 55667899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
++..+++|++ +...+++++.++|||||.+++.+.....
T Consensus 80 ~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 117 (170)
T 3i9f_A 80 LFANSFHDMD--DKQHVISEVKRILKDDGRVIIIDWRKEN 117 (170)
T ss_dssp EEESCSTTCS--CHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred EEccchhccc--CHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence 9999999998 6679999999999999999999865543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=145.84 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=90.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCC-----------------------------
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM----------------------------- 206 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~----------------------------- 206 (284)
++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|++++...+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 578999999999999999988743 48999999999999999987653311
Q ss_pred -----------------------CCCCCcceeEEEcCCCCCC-----CCCCceeEEEecchhccC----ChhhHHHHHHH
Q 023288 207 -----------------------APDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHL----TDDDFVSFFKR 254 (284)
Q Consensus 207 -----------------------~~~~~~~~~~~~~d~~~~~-----~~~~~fD~Iv~~~~l~~~----~~~~~~~~l~~ 254 (284)
...+..+++|.++|+.... +.+++||+|+|..+++|+ .++++..++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 0111257999999998654 456899999999999887 66678899999
Q ss_pred HHhcCCCCcEEEEEe
Q 023288 255 AKVGLKPGGFFVLKE 269 (284)
Q Consensus 255 ~~r~LkpGG~lii~e 269 (284)
++++|||||+|++..
T Consensus 206 ~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 206 IYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHEEEEEEEEEEC
T ss_pred HHHHhCCCcEEEEec
Confidence 999999999999953
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=146.12 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=82.0
Q ss_pred CCCceEEEeeccccHHHHHH----HHhCCC-c--EEEEeCCHHHHHHHHHHcCCC-CCCCCCCCcceeEEEcCCCCCC--
Q 023288 156 NQHLVALDCGSGIGRITKNL----LIRYFN-E--VDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFT-- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l----~~~~~~-~--v~gvD~S~~~l~~ar~~~~~~-~~~~~~~~~~~~~~~~d~~~~~-- 225 (284)
.++.+|||||||+|.++..+ +..+.. . ++|+|+|+.|++.|++++... +.. ..+..+...++.+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~----~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE----NVKFAWHKETSSEYQSR 126 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT----TEEEEEECSCHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC----cceEEEEecchhhhhhh
Confidence 46779999999999876543 333332 2 399999999999999987532 110 112344455554432
Q ss_pred ----CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 226 ----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 226 ----~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+++++||+|++..++||++ ++..++++++++|||||++++.+..
T Consensus 127 ~~~~~~~~~fD~V~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HHTTTCCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hccccCCCceeEEEEeeeeeecC--CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 4568999999999999999 6679999999999999999998653
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.7e-17 Score=139.85 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=90.1
Q ss_pred CCceEEEeeccc---cHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 157 QHLVALDCGSGI---GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 157 ~~~~VLDiGcGt---G~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
...+|||||||+ |.++..+.+... .+|+++|+|+.|++.|++++.. ..+++++++|+.+..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--------~~~v~~~~~D~~~~~~~~~~~~ 148 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--------DPNTAVFTADVRDPEYILNHPD 148 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--------CTTEEEEECCTTCHHHHHHSHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--------CCCeEEEEeeCCCchhhhccch
Confidence 346999999999 988876555433 3799999999999999999854 356899999997631
Q ss_pred ----CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 226 ----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 226 ----~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
++..+||+|+++.++||+++++...+++++.++|+|||+|++.+...
T Consensus 149 ~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 149 VRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred hhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 22248999999999999997778899999999999999999998764
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=143.63 Aligned_cols=110 Identities=25% Similarity=0.355 Sum_probs=92.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++...+. ....+++++++|+.++++ +++||+|++
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~v~~~~~d~~~~~~-~~~fD~v~~ 156 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPA---DVRDRCTLVQGDMSAFAL-DKRFGTVVI 156 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCH---HHHTTEEEEECBTTBCCC-SCCEEEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhccc---ccccceEEEeCchhcCCc-CCCcCEEEE
Confidence 345999999999999999887755 599999999999999999865321 001468999999999887 579999986
Q ss_pred c-chhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 237 Q-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 237 ~-~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
. .+++|+++++...+++++.++|||||.|++....
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 157 SSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 5 6788888778899999999999999999998643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=141.62 Aligned_cols=103 Identities=20% Similarity=0.365 Sum_probs=89.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+. +++|+|+|+.|++.++++....+ .++++.++|+.+++++ ++||+|++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~-~~fD~v~~ 107 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQG-------LKPRLACQDISNLNIN-RKFDLITC 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTT-------CCCEEECCCGGGCCCS-CCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcC-------CCeEEEecccccCCcc-CCceEEEE
Confidence 668999999999999998887654 69999999999999999875432 2588999999888766 79999999
Q ss_pred cc-hhccCC-hhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 237 QW-CIGHLT-DDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 237 ~~-~l~~~~-~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.. +++|++ .++...+++++.++|||||.+++.
T Consensus 108 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 98 999994 357889999999999999999985
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-17 Score=134.14 Aligned_cols=110 Identities=11% Similarity=0.017 Sum_probs=84.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++...++ .++++++.+...+. +.+++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~~~~~l~~~~~~~fD~ 92 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI------ENTELILDGHENLDHYVREPIRA 92 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC------CCEEEEESCGGGGGGTCCSCEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCcHHHHHhhccCCcCE
Confidence 346789999999999999988866 55799999999999999999865432 46888888777643 33578999
Q ss_pred EEecchhccC-------ChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 234 IWVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 234 Iv~~~~l~~~-------~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+++....+. ..++...+++++.++|||||.+++....
T Consensus 93 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 93 AIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred EEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 9987432221 2245668899999999999999998653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=144.21 Aligned_cols=112 Identities=16% Similarity=0.031 Sum_probs=94.2
Q ss_pred CCCCceEEEeeccccHHHHHHH-HhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLL-IRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~-~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||||||+|..+..++ ... ..+|+|+|+|+.+++.|++++...+. ..+++++++|+.+++++ ++||
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~fD 189 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----AGQITLHRQDAWKLDTR-EGYD 189 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEECCGGGCCCC-SCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECchhcCCcc-CCeE
Confidence 3567899999999999999874 222 23799999999999999999987654 34699999999998877 8999
Q ss_pred EEEecchhccCChhh-HHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 233 VIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+|+++.+++|+++.+ ...+++++.++|||||.+++.+...
T Consensus 190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 999999999997443 4458999999999999999987654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-17 Score=142.04 Aligned_cols=118 Identities=22% Similarity=0.311 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~ 218 (284)
..++...+.... ..++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++....+ .++++++
T Consensus 27 ~~~~~~~~~~~~----~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~ 94 (252)
T 1wzn_A 27 IDFVEEIFKEDA----KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERN-------LKIEFLQ 94 (252)
T ss_dssp HHHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-------CCCEEEE
T ss_pred HHHHHHHHHHhc----ccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcC-------CceEEEE
Confidence 345555554321 34567999999999999999887755 69999999999999999875432 3588999
Q ss_pred cCCCCCCCCCCceeEEEec-chhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 219 VPLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 219 ~d~~~~~~~~~~fD~Iv~~-~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+.+++++ ++||+|++. ..+++++.++...+++++.++|||||.+++.-
T Consensus 95 ~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 95 GDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp SCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CChhhcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 999887765 689999987 45677777788999999999999999998753
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=142.80 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=95.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+..+|||||||+|..+..+++.++. +++++|+ +.+++.|++++...++ ..++++..+|+. .+.+. +||+
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~-~~~p~-~~D~ 238 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL-----SGRAQVVVGSFF-DPLPA-GAGG 238 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTT-SCCCC-SCSE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc-----CcCeEEecCCCC-CCCCC-CCcE
Confidence 345679999999999999999987655 7999999 9999999998765443 357999999997 34443 8999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
|++.+++||+++++...++++++++|+|||++++.|.+.++.
T Consensus 239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 280 (332)
T 3i53_A 239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE 280 (332)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC--
T ss_pred EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC
Confidence 999999999998878899999999999999999999876543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=130.41 Aligned_cols=103 Identities=19% Similarity=0.183 Sum_probs=91.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++.. ++++.+.|+.++++++++||+|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP-----------EARWVVGDLSVDQISETDFDLIV 112 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTTSCCCCCCEEEEE
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC-----------CCcEEEcccccCCCCCCceeEEE
Confidence 3678999999999999998887754 69999999999999999863 37889999998877778999999
Q ss_pred ec-chhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~-~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+. .+++|++.++...+++++.++|+|||.+++...
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 98 789999877888999999999999999999754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-17 Score=138.66 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=85.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.++++... .+.++|+.++++++++||+|++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~------------~~~~~d~~~~~~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK------------NVVEAKAEDLPFPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS------------CEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC------------CEEECcHHHCCCCCCCEEEEEE
Confidence 567999999999999998886654 699999999999999998641 2788999998887889999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
..+++|+.. +...+++++.++|||||.+++...
T Consensus 121 ~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 121 LGDVLSYVE-NKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSSHHHHCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhhccc-cHHHHHHHHHHHcCCCeEEEEEeC
Confidence 887666532 477999999999999999999753
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=141.35 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=91.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC---------------CCC--------CC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM---------------APD--------MH 211 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~---------------~~~--------~~ 211 (284)
..++.+|||+|||+|.++..++..++.+|+|+|+|+.|++.+++++...+.. ... ..
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3467899999999999999877666647999999999999999988653100 000 00
Q ss_pred cce-eEEEcCCCCCCC-CC---CceeEEEecchhccCChh--hHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 212 KAT-NFFCVPLQDFTP-ET---GRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 212 ~~~-~~~~~d~~~~~~-~~---~~fD~Iv~~~~l~~~~~~--~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
.++ ++.++|+.+..+ ++ ++||+|++..++++++.. +...+++++.++|||||.|++.+..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 126 899999988643 44 799999999999955432 7789999999999999999998743
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-17 Score=137.75 Aligned_cols=102 Identities=22% Similarity=0.274 Sum_probs=87.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++.. .+|+|+|+|+.|++.|+++.... ..++++.++|+.+++++ ++||+|++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~-~~fD~v~~ 102 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMET-------NRHVDFWVQDMRELELP-EPVDAITI 102 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHT-------TCCCEEEECCGGGCCCS-SCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhc-------CCceEEEEcChhhcCCC-CCcCEEEE
Confidence 4579999999999999988755 57999999999999999987542 23588999999888765 78999999
Q ss_pred cc-hhccC-ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 237 QW-CIGHL-TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 237 ~~-~l~~~-~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.. +++|+ +.++...+++++.++|||||.+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 86 99998 4457889999999999999999984
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=142.89 Aligned_cols=119 Identities=15% Similarity=0.001 Sum_probs=93.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcC-------CCCCCCCCCCcceeEEEcCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLA-------PENHMAPDMHKATNFFCVPLQDFTP 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (284)
..++.+|||||||+|.++..++..... +++|||+|+.|++.|+++.. ..++. ..+++|+++|+.++++
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~----~~rVefi~GD~~~lp~ 246 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK----HAEYTLERGDFLSEEW 246 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC----CCEEEEEECCTTSHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC----CCCeEEEECcccCCcc
Confidence 567889999999999999988866444 59999999999999987531 11110 1469999999998775
Q ss_pred CC--CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 227 ET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 227 ~~--~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
.+ ..||+|+++..++ . ++....|.++.++|||||.|++.|.+.+.+.-++.
T Consensus 247 ~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~ 299 (438)
T 3uwp_A 247 RERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 299 (438)
T ss_dssp HHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCS
T ss_pred ccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCc
Confidence 43 4799999987753 2 47778999999999999999999988777665443
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-16 Score=140.69 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=96.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+..+|||||||+|.++..+++.++. +++++|+ +.+++.|++++...++ ..++++..+|+. .+.+. +||+
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l-----~~~v~~~~~d~~-~~~p~-~~D~ 271 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL-----ADRCEILPGDFF-ETIPD-GADV 271 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTT-TCCCS-SCSE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc-----CCceEEeccCCC-CCCCC-CceE
Confidence 456789999999999999999987654 7999999 9999999998765443 357999999998 34443 8999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|++..++|++++++...++++++++|+|||++++.|.+.++
T Consensus 272 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 272 YLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred EEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 99999999999888889999999999999999999987654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-17 Score=143.24 Aligned_cols=114 Identities=14% Similarity=0.164 Sum_probs=83.9
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCC--------C--C--------------Cc
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAP--------D--M--------------HK 212 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~--------~--~--------------~~ 212 (284)
++.+|||||||+|..+..++.....+|+|+|+|+.|++.|++++........ . . ..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 6689999999999965533333345899999999999999987654210000 0 0 00
Q ss_pred ceeEEEcCCCC-CCC-----CCCceeEEEecchhccCChh--hHHHHHHHHHhcCCCCcEEEEEec
Q 023288 213 ATNFFCVPLQD-FTP-----ETGRYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 213 ~~~~~~~d~~~-~~~-----~~~~fD~Iv~~~~l~~~~~~--~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.++++.+|+.+ +++ ++++||+|+++.+++|+... ++..+++++.++|||||+|++.+.
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 14567778887 443 34679999999999996533 788999999999999999999853
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.8e-17 Score=132.72 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=90.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (284)
.++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++...++ .+++++++|+.++. +++++||+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~fD~ 116 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL------SGATLRRGAVAAVVAAGTTSPVDL 116 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC------SCEEEEESCHHHHHHHCCSSCCSE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC------CceEEEEccHHHHHhhccCCCccE
Confidence 46789999999999999988877766899999999999999999865432 46899999988763 33579999
Q ss_pred EEecchhccCChhhHHHHHHHHHh--cCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r--~LkpGG~lii~e~ 270 (284)
|+++..+++. .++...+++++.+ +|+|||.+++...
T Consensus 117 i~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 117 VLADPPYNVD-SADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp EEECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred EEECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 9999887764 2467899999999 9999999999754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=137.06 Aligned_cols=112 Identities=12% Similarity=-0.028 Sum_probs=91.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHH------HHHHHHHHcCCCCCCCCCCCcceeEEEcC---CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSH------FLDAARESLAPENHMAPDMHKATNFFCVP---LQD 223 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~------~l~~ar~~~~~~~~~~~~~~~~~~~~~~d---~~~ 223 (284)
..++.+|||||||+|.++..++..+ . .+|+|+|+|+. |++.|++++...++ ..++++.++| ...
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~ 115 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----GDRLTVHFNTNLSDDL 115 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----GGGEEEECSCCTTTCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----CCceEEEECChhhhcc
Confidence 4577899999999999999998774 3 47999999997 99999999876543 3578999998 344
Q ss_pred CCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 224 FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 224 ~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+++++++||+|++..+++|+++. ..+++.+.++++|||.+++.+....
T Consensus 116 ~~~~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 116 GPIADQHFDRVVLAHSLWYFASA--NALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp GGGTTCCCSEEEEESCGGGSSCH--HHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred CCCCCCCEEEEEEccchhhCCCH--HHHHHHHHHHhCCCCEEEEEEecCC
Confidence 45567899999999999999854 4678888888888999999986543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=141.23 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=96.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||+|||+|..+..+++.... +++++|+| .+++.|++++...++ ..++++..+|+.+.+++. .||+|
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~-~~D~v 236 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV-----ASRYHTIAGSAFEVDYGN-DYDLV 236 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC-----GGGEEEEESCTTTSCCCS-CEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC-----CcceEEEecccccCCCCC-CCcEE
Confidence 56789999999999999999887543 79999999 999999998754332 346999999998876654 49999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
++.+++||+++++...+++++.++|+|||++++.|...++
T Consensus 237 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 237 LLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNS 276 (335)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred EEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence 9999999999888899999999999999999999986554
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-16 Score=138.58 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=96.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||||||+|.++..+++.++. +++++|+ +.+++.|++++...++ ..++++..+|+.+.++++ +|+
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~--~D~ 259 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYPE--ADA 259 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-----TTTEEEEECCTTTSCCCC--CSE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC-----CCCEEEEeCccccCCCCC--CCE
Confidence 456789999999999999999987654 7999999 9999999998765433 345899999998876654 499
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|++..++|++++++...+++++.++|||||++++.|.+.++
T Consensus 260 v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 300 (359)
T 1x19_A 260 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 300 (359)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCC
T ss_pred EEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCC
Confidence 99999999999877899999999999999999999976543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.2e-17 Score=135.81 Aligned_cols=101 Identities=23% Similarity=0.294 Sum_probs=82.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC---CCC-CCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE-TGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~-~~~f 231 (284)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++. ++.+...++.++ +.. .++|
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAG------------AGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHTC------------SSCEEECCHHHHHTTCSCCCCCE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhc------------ccccchhhHHhhcccccccCCCc
Confidence 3568999999999999998886654 6999999999999999871 245677766655 433 3459
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
|+|++..+++ .. +...+++++.++|||||.+++.+...
T Consensus 118 D~v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 118 DLICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp EEEEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cEEEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 9999999999 55 56699999999999999999987643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=139.27 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=90.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC-CCCCCcceeEEEcCCCCCC----C--CCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT----P--ETG 229 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~-~~~~~~~~~~~~~d~~~~~----~--~~~ 229 (284)
++.+|||+|||+|.++..++.....+|+++|+|+.|++.|+++....+.. ......+++++++|+.+++ + +++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 56799999999999999888765558999999999999999886431000 0000236899999998875 4 245
Q ss_pred ceeEEEecchhccC--ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~--~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+||+|+++.++||+ +.++...+++++.++|||||.++++..
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 89999999999998 445678999999999999999999754
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=126.92 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=87.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++...+. .+++++++|+.+.....++||+
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~D~ 111 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA------RNVTLVEAFAPEGLDDLPDPDR 111 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC------TTEEEEECCTTTTCTTSCCCSE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEeCChhhhhhcCCCCCE
Confidence 56778999999999999999998763 3799999999999999998765332 4688999999765544468999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|++..+++ +...+++++.++|||||.+++...
T Consensus 112 i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 112 VFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp EEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 99988765 556899999999999999999754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-16 Score=125.47 Aligned_cols=104 Identities=17% Similarity=0.088 Sum_probs=83.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...+. ..++ +++.|..+ ++..+++||
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~-~~~~d~~~~~~~~~~~~D 96 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV-----SDRI-AVQQGAPRAFDDVPDNPD 96 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-----TTSE-EEECCTTGGGGGCCSCCS
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-----CCCE-EEecchHhhhhccCCCCC
Confidence 45778999999999999998886643 3799999999999999999876543 2357 77787754 232227899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++..++++ ..+++++.++|||||.+++.+.
T Consensus 97 ~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 97 VIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp EEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred EEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 9999999887 2799999999999999999764
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=141.53 Aligned_cols=111 Identities=21% Similarity=0.260 Sum_probs=95.8
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~Iv 235 (284)
+.+|||||||+|.++..+++.++. +++++|+ +.+++.++++....++ ..++++..+|+.+.+. .++.||+|+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~D~v~ 253 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL-----GGRVEFFEKNLLDARNFEGGAADVVM 253 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC-----GGGEEEEECCTTCGGGGTTCCEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC-----CCceEEEeCCcccCcccCCCCccEEE
Confidence 789999999999999999987654 8999999 8899999998765443 3579999999988651 335799999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+..++||+++++...++++++++|||||++++.|.+.++
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (352)
T 3mcz_A 254 LNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND 292 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred EecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 999999999888899999999999999999999976544
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-16 Score=149.36 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=92.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.|++++............+++++++|+.++++.+++||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 4678999999999999998886653 47999999999999999854311000000024799999999999988889999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|++..+++|++++....+++++.++|||| .++++.
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 99999999999887778999999999999 777765
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-16 Score=134.68 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=78.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC-CCCCCC-CCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPE-TGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~-~~~fD~ 233 (284)
.++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++. .+++++++|+ ..++++ +++||+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~~fD~ 114 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA-----------PHADVYEWNGKGELPAGLGAPFGL 114 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC-----------TTSEEEECCSCSSCCTTCCCCEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC-----------CCceEEEcchhhccCCcCCCCEEE
Confidence 3678999999999999998887754 6999999999999999983 3588999999 556766 789999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
|+++ . +...+++++.++|||||.++.
T Consensus 115 v~~~------~--~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 115 IVSR------R--GPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp EEEE------S--CCSGGGGGHHHHEEEEEEEEE
T ss_pred EEeC------C--CHHHHHHHHHHHcCCCcEEEE
Confidence 9987 1 334789999999999999983
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.6e-16 Score=126.68 Aligned_cols=111 Identities=12% Similarity=0.002 Sum_probs=89.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...++ ..+++++++|+.+++ ..+++|
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~f 94 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----IDRVTLIKDGHQNMDKYIDCPV 94 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----GGGEEEECSCGGGGGGTCCSCE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHHHhhhccCCc
Confidence 3467899999999999999988763 23799999999999999999876543 357999999988775 455799
Q ss_pred eEEEecchhc-------cCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIG-------HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~-------~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+|+++..+. ....++...+++++.++|||||.+++...
T Consensus 95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 9999887551 11223456799999999999999999864
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-16 Score=140.08 Aligned_cols=111 Identities=17% Similarity=0.241 Sum_probs=92.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||||||+|.++..+++.+.. +++++|+ +.+++.|++++...++ ..++++..+|+.+ +.+. .||+
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~~-~~D~ 251 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGDFFK-PLPV-TADV 251 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCSC-CEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC-----CCceEEEeCCCCC-cCCC-CCCE
Confidence 456789999999999999999987644 7999999 9999999998765433 3479999999876 3333 4999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec--cCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN--IAR 273 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~--~~~ 273 (284)
|++..++||+++++...+++++.++|||||++++.|. +.+
T Consensus 252 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 293 (374)
T 1qzz_A 252 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEG 293 (374)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---
T ss_pred EEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcC
Confidence 9999999999987778999999999999999999998 543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=130.75 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=86.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC--CCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~ 233 (284)
.++.+|||+|||+|.++..++.. ..+++++|+|+.+++.++++. .++.+.|+.+ .++++++||+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~-------------~~~~~~d~~~~~~~~~~~~fD~ 96 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL-------------DHVVLGDIETMDMPYEEEQFDC 96 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS-------------SEEEESCTTTCCCCSCTTCEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC-------------CcEEEcchhhcCCCCCCCccCE
Confidence 46789999999999999988876 467999999999999998764 2578888876 4556689999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|++..+++|++ +...+++++.++|+|||.+++....
T Consensus 97 v~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 97 VIFGDVLEHLF--DPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp EEEESCGGGSS--CHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred EEECChhhhcC--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999999998 5569999999999999999998643
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=126.70 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=84.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.|++.|++++...++ ..+++++++|+.+......+||+|
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~~~~~~~~D~v 126 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGL-----SPRMRAVQGTAPAALADLPLPEAV 126 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCTTGGGTTSCCCSEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC-----CCCEEEEeCchhhhcccCCCCCEE
Confidence 457789999999999999998877 55799999999999999999865543 236899999998843333579999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++...+ +.. +++++.++|||||.+++...
T Consensus 127 ~~~~~~------~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 127 FIGGGG------SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp EECSCC------CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred EECCcc------cHH-HHHHHHHhcCCCcEEEEEec
Confidence 987744 344 99999999999999999754
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-16 Score=136.03 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=84.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||||||+|.++..++.+ ...+|+|+|+|+.|++.|++++...++ .+++++++|+.+++ +++||+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl------~~v~~v~gDa~~l~--d~~FDv 191 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV------DGVNVITGDETVID--GLEFDV 191 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC------CSEEEEESCGGGGG--GCCCSE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC------CCeEEEECchhhCC--CCCcCE
Confidence 678899999999999877555444 334799999999999999999865432 46899999998875 579999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|++... .+ +...+++++.++|||||+|++.+.
T Consensus 192 V~~~a~---~~--d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 192 LMVAAL---AE--PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEECTT---CS--CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEECCC---cc--CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 998654 33 677999999999999999999863
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-16 Score=142.95 Aligned_cols=109 Identities=21% Similarity=0.213 Sum_probs=91.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|++++...++ ..+++++++|+.+++++ ++||+|
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~-~~~D~I 133 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNL-----DHIVEVIEGSVEDISLP-EKVDVI 133 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTC-----TTTEEEEESCGGGCCCS-SCEEEE
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCC-----CCeEEEEECchhhcCcC-CcceEE
Confidence 45778999999999999999988777689999999 999999999876554 35589999999998876 799999
Q ss_pred EecchhccCCh-hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~-~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..+.+++.. ..+..+++++.++|||||.+++.+.
T Consensus 134 v~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 134 ISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp EECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred EEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 99776666543 3477899999999999999988653
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-16 Score=134.22 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=86.4
Q ss_pred CCceEEEeeccccH----HHHHHHHhCC-----CcEEEEeCCHHHHHHHHHHcCC-----------------------CC
Q 023288 157 QHLVALDCGSGIGR----ITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAP-----------------------EN 204 (284)
Q Consensus 157 ~~~~VLDiGcGtG~----~s~~l~~~~~-----~~v~gvD~S~~~l~~ar~~~~~-----------------------~~ 204 (284)
++.+|||+|||||. ++..+++... .+|+|+|+|+.||+.|++..-. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 5554554411 2799999999999999987410 00
Q ss_pred -CC-CCCCCcceeEEEcCCCCCCCC-CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 205 -HM-APDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 205 -~~-~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+. ......++.|.+.|+.+.+++ .++||+|+|.++++|++++....+++++++.|+|||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 00 000113689999999886544 47899999999999999888889999999999999999994
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=131.13 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=87.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--CCCc-eeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR-YDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~-fD~ 233 (284)
++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++...++. ..+++++++|+.++.. .+++ ||+
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~fD~ 128 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSSLDFLKQPQNQPHFDV 128 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC----ccceEEEECCHHHHHHhhccCCCCCE
Confidence 45799999999999999888777768999999999999999998654320 0468999999876532 3568 999
Q ss_pred EEecchhccCChhhHHHHHHHH--HhcCCCCcEEEEEeccC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKENIA 272 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~--~r~LkpGG~lii~e~~~ 272 (284)
|++...++ .. +...+++.+ .++|+|||.+++..+..
T Consensus 129 I~~~~~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 129 VFLDPPFH-FN--LAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EEECCCSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred EEECCCCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 99988854 33 566888888 67899999999976543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.4e-16 Score=137.63 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=87.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|++++...++ ..+++++++|+.++++++++||+|
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~I 135 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKL-----EDTITLIKGKIEEVHLPVEKVDVI 135 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSCSCEEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCC-----CCcEEEEEeeHHHhcCCCCcEEEE
Confidence 356789999999999999988877665899999997 99999998866543 357899999999988777899999
Q ss_pred Eecch---hccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 235 WVQWC---IGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 235 v~~~~---l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
++.++ +.+.. ++..++.++.++|||||.++
T Consensus 136 vs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 136 ISEWMGYFLLFES--MLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EECCCBTTBTTTC--HHHHHHHHHHHHEEEEEEEE
T ss_pred EEcCchhhccCHH--HHHHHHHHHHhhcCCCcEEE
Confidence 98773 44434 67789999999999999988
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-16 Score=137.45 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=92.7
Q ss_pred ceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
.+|||+|||+|..+..+++..+. +++++|+ +.+++.|++++...++ ..++++..+|+.+ +.+ ++||+|++.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~v~~~ 240 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA-----GERVSLVGGDMLQ-EVP-SNGDIYLLS 240 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH-----TTSEEEEESCTTT-CCC-SSCSEEEEE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC-----CCcEEEecCCCCC-CCC-CCCCEEEEc
Confidence 89999999999999999887644 7999999 9999999998653221 2468999999977 444 689999999
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
.++||+++++...+++++.++|+|||++++.|.+.++
T Consensus 241 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 277 (334)
T 2ip2_A 241 RIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA 277 (334)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 9999999888889999999999999999999986543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-16 Score=133.12 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=86.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-C--CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T--PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~fD 232 (284)
++.+|||||||+|.++..++..... .|+|+|+|+.|++.|++++...++ .+++++++|+.++ + +++++||
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l------~nv~~~~~Da~~~l~~~~~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL------SNLRVMCHDAVEVLHKMIPDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC------SSEEEECSCHHHHHHHHSCTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHcCCCChh
Confidence 5679999999999999999877654 799999999999999998765443 4689999998774 2 5678999
Q ss_pred EEEecchhccCChhhH------HHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDF------VSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~------~~~l~~~~r~LkpGG~lii~e 269 (284)
.|++.+...+...... ..+++++.++|||||.|++..
T Consensus 108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 9998865444332221 259999999999999999974
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=128.04 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=86.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (284)
++.+|||||||+|.++..++...+. +++|+|+|+.+++.|++++...++ .+++++++|+.+++ +++++||+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~D~ 114 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEIDR 114 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCCSE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCCCCCCE
Confidence 5678999999999999999887643 799999999999999998765332 46899999998876 66779999
Q ss_pred EEecchhccCChh------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+++....+.... ....+++++.++|+|||.+++..
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 9998765432211 12579999999999999999964
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.5e-16 Score=127.71 Aligned_cols=102 Identities=19% Similarity=0.089 Sum_probs=87.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++...+. .++++..+|+.+...+.++||+|
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~D~i 147 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDL------HNVSTRHGDGWQGWQARAPFDAI 147 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC------CceEEEECCcccCCccCCCccEE
Confidence 467889999999999999988877 45799999999999999999865443 36899999998866566799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++|+++ ++.++|||||++++.-..
T Consensus 148 ~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 148 IVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred EEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999883 478999999999997553
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=123.46 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=89.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc--eeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA--TNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...+. .+ +++.++|+.+.. ++++||
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~------~~~~~~~~~~d~~~~~-~~~~~D 121 (194)
T 1dus_A 50 VDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNL------DNYDIRVVHSDLYENV-KDRKYN 121 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC------TTSCEEEEECSTTTTC-TTSCEE
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCC------CccceEEEECchhccc-ccCCce
Confidence 347789999999999999988866 55799999999999999998865432 33 889999998743 357899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|+++.++++. .++...+++++.++|+|||.+++....
T Consensus 122 ~v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 122 KIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp EEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EEEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 99999888763 346779999999999999999998754
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-16 Score=132.22 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=83.5
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+.+|||+|||+|.++..++.. +++|+|+.|++.++++ ++++.++|+.++++++++||+|++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------------CCEEEEcccccCCCCCCCeeEEEEc
Confidence 679999999999999977633 9999999999999886 2678899998888777899999999
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
.+++|++ +...+++++.++|+|||.+++.+..
T Consensus 110 ~~l~~~~--~~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 110 TTICFVD--DPERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp SCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chHhhcc--CHHHHHHHHHHHcCCCcEEEEEEeC
Confidence 9999998 6669999999999999999998754
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-16 Score=129.68 Aligned_cols=107 Identities=12% Similarity=0.236 Sum_probs=85.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (284)
++.+|||||||+|.++..++..... +|+|+|+|+.|++.|++++...++ .+++++++|+.+++ +++++||.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~------~nv~~~~~d~~~l~~~~~~~~~d~ 111 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEVKR 111 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCcCCcCE
Confidence 5678999999999999999877543 799999999999999998765432 46899999998765 56689999
Q ss_pred EEecchhccCChh------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+++....+.... ....+++++.++|||||.|++..
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 9987654332211 03579999999999999999864
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=126.56 Aligned_cols=102 Identities=13% Similarity=0.006 Sum_probs=78.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~ 229 (284)
..++.+|||+|||+|..+..+++... .+|+|+|+|+.|++.+.+.... ..++.++.+|+... ++. +
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~-~ 125 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIV-E 125 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTC-C
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc--------CCCeEEEEcCCCCchhhcccc-c
Confidence 56778999999999999998887642 3799999999987766555432 23577888888763 333 7
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+||+|+++.. + ..+...+++++.++|||||.|++.-
T Consensus 126 ~fD~V~~~~~-~---~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 126 KVDLIYQDIA-Q---KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CEEEEEECCC-S---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEecc-C---hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999998732 2 1244456999999999999999973
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-16 Score=138.96 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=89.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..+++.+..+|+|+|+|+ |++.|++++...++ ..+++++++|+.++++++++||+|+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~fD~Ii 138 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKL-----DHVVTIIKGKVEEVELPVEKVDIII 138 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCC-----CCcEEEEECcHHHccCCCCceEEEE
Confidence 36689999999999999998877666899999995 99999998876554 3458999999999988778999999
Q ss_pred ecchhccC-ChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~~~-~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+.++.+++ ....+..++.++.++|||||.+++
T Consensus 139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 98765444 223677899999999999999874
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-16 Score=140.03 Aligned_cols=107 Identities=23% Similarity=0.227 Sum_probs=92.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++...+. +++++++|+.+...++++||+|+
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~-------~v~~~~~D~~~~~~~~~~fD~Ii 303 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL-------KAQALHSDVDEALTEEARFDIIV 303 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTTTTSCTTCCEEEEE
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-------CeEEEEcchhhccccCCCeEEEE
Confidence 3567999999999999999987755 799999999999999999876432 37899999998876668999999
Q ss_pred ecchhcc---CChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGH---LTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~---~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..+|+ ...++...+++++.++|||||.++++.+
T Consensus 304 ~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 304 TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp ECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 9999988 3445678999999999999999999865
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=136.04 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=88.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||||||+|..+..+++.++. +++++|+ +.++. +++....+. ..++++..+|+.+ +.+ +||+
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~-----~~~v~~~~~d~~~-~~p--~~D~ 250 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDV-----AGRWKVVEGDFLR-EVP--HADV 250 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGG-----TTSEEEEECCTTT-CCC--CCSE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCC-----CCCeEEEecCCCC-CCC--CCcE
Confidence 456789999999999999999987665 7899999 45555 333332221 3569999999962 333 8999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
|++..++||+++++...++++++++|||||+|++.|.+.++.
T Consensus 251 v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~ 292 (348)
T 3lst_A 251 HVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEG 292 (348)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSS
T ss_pred EEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 999999999998877899999999999999999999865543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.8e-18 Score=142.89 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=84.1
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|++++...++ ..+++++++|+.+++ ++++||+|++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~-~~~~~D~v~~ 150 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGI-----ADKIEFICGDFLLLA-SFLKADVVFL 150 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHG-GGCCCSEEEE
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCC-----CcCeEEEECChHHhc-ccCCCCEEEE
Confidence 57899999999999999998776 5799999999999999999876543 247999999998876 4579999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.++++..... ..+.++.++|+|||.+++.
T Consensus 151 ~~~~~~~~~~~--~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 151 SPPWGGPDYAT--AETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CCCCSSGGGGG--SSSBCTTTSCSSCHHHHHH
T ss_pred CCCcCCcchhh--hHHHHHHhhcCCcceeHHH
Confidence 99999876433 4666777888888875543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=137.36 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=93.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||||||+|.++..+++.+.. +++++|+ +.+++.|++++...++ ..++++..+|+.+ +.+ ..||+
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~~-~~~D~ 252 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGDFFE-PLP-RKADA 252 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCS-SCEEE
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC-----CCceEEEeCCCCC-CCC-CCccE
Confidence 356789999999999999999987654 7999999 9999999998765433 3479999999876 333 35999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|++..++||+++++...+++++.++|||||++++.|.+
T Consensus 253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 99999999999887789999999999999999999987
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-16 Score=130.62 Aligned_cols=119 Identities=10% Similarity=0.034 Sum_probs=89.4
Q ss_pred ccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc
Q 023288 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (284)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~ 213 (284)
+.....+....+. . ..++.+|||+|||+|.++..++...+. +|+++|+|+.|++.+++++...|. ..+
T Consensus 33 Lp~ld~fY~~~~~-~-----l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~-----~~~ 101 (200)
T 3fzg_A 33 VATLNDFYTYVFG-N-----IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT-----TIK 101 (200)
T ss_dssp GGGHHHHHHHHHH-H-----SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC-----SSE
T ss_pred hHhHHHHHHHHHh-h-----cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----Ccc
Confidence 3444455444333 2 235789999999999999988654322 899999999999999999876543 224
Q ss_pred eeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+++ .|.... .+.++||+|++..++|+++ +....+.++.+.|+|||.|+-.+
T Consensus 102 v~~--~d~~~~-~~~~~~DvVLa~k~LHlL~--~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 102 YRF--LNKESD-VYKGTYDVVFLLKMLPVLK--QQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp EEE--ECCHHH-HTTSEEEEEEEETCHHHHH--HTTCCHHHHHHTCEEEEEEEEEE
T ss_pred EEE--eccccc-CCCCCcChhhHhhHHHhhh--hhHHHHHHHHHHhCCCCEEEEeC
Confidence 444 555443 3457899999999999994 44577779999999999988877
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=137.18 Aligned_cols=107 Identities=16% Similarity=0.137 Sum_probs=91.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|++++...++ ..+++++.+|+.+++.+ ++||+|
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l-----~~~v~~~~~d~~~~~~~-~~~D~I 120 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVEEVSLP-EQVDII 120 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEE
T ss_pred cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCC-----CCcEEEEEcchhhCCCC-CceeEE
Confidence 346789999999999999988877666899999996 99999998765543 35789999999988765 589999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++..+++|+..++....+.++.++|||||.+++.
T Consensus 121 vs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 121 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 9999998887777788899999999999999854
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-16 Score=147.46 Aligned_cols=105 Identities=19% Similarity=0.217 Sum_probs=83.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++... .....+...+...+++++++||+|
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~~~~~~l~~~~~~fD~I 175 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIR--------VRTDFFEKATADDVRRTEGPANVI 175 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCC--------EECSCCSHHHHHHHHHHHCCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCC--------cceeeechhhHhhcccCCCCEEEE
Confidence 45778999999999999999887766 699999999999999987211 011112223333444456799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..+++|++ +...+++++.++|||||++++...
T Consensus 176 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 176 YAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp EEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999999998 677999999999999999999754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-15 Score=125.71 Aligned_cols=109 Identities=8% Similarity=-0.006 Sum_probs=87.4
Q ss_pred hcCCccCCCCceEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--
Q 023288 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-- 224 (284)
Q Consensus 149 ~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 224 (284)
.+.....+++.+|||+|||+|.++..+++.- .. +|+++|+|+.|++.+++++.. ..|+..+..|....
T Consensus 69 gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~--------~~ni~~V~~d~~~p~~ 140 (233)
T 4df3_A 69 GLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD--------RRNIFPILGDARFPEK 140 (233)
T ss_dssp TCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT--------CTTEEEEESCTTCGGG
T ss_pred chhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh--------hcCeeEEEEeccCccc
Confidence 3344457899999999999999999998763 33 799999999999999999876 35788888887653
Q ss_pred -CCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 225 -~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+...+++|+|++... +.. +...++.++.+.|||||.++++.
T Consensus 141 ~~~~~~~vDvVf~d~~--~~~--~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 141 YRHLVEGVDGLYADVA--QPE--QAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp GTTTCCCEEEEEECCC--CTT--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccceEEEEEEecc--CCh--hHHHHHHHHHHhccCCCEEEEEE
Confidence 345678999987533 323 55689999999999999999974
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=126.68 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=86.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..+++.+..+|+++|+|+.|++.|++++...+. .++++.++|+.+.. +++||+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~--~~~fD~i~ 130 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGI------YDIALQKTSLLADV--DGKFDLIV 130 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CCCEEEESSTTTTC--CSCEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEeccccccC--CCCceEEE
Confidence 36789999999999999988865555899999999999999999865443 23889999997753 47899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++.++++ +..+++++.++|+|||.+++.+..
T Consensus 131 ~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 131 ANILAEI-----LLDLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp EESCHHH-----HHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred ECCcHHH-----HHHHHHHHHHhcCCCCEEEEEecC
Confidence 9988765 458999999999999999997643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=127.51 Aligned_cols=106 Identities=21% Similarity=0.154 Sum_probs=84.4
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeE
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 233 (284)
.++.+|||+||| +|.++..++.....+|+|+|+|+.+++.|++++...+ .+++++++|+..+ ++++++||+
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~v~~~~~d~~~~~~~~~~~fD~ 126 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN-------SNVRLVKSNGGIIKGVVEGTFDV 126 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT-------CCCEEEECSSCSSTTTCCSCEEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC-------CCcEEEeCCchhhhhcccCceeE
Confidence 467899999999 9999998887744579999999999999999986543 2688999997544 344579999
Q ss_pred EEecchhccCChh-----------------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDD-----------------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~-----------------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+++..+++.++. ....+++++.++|||||.+++.
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 9999777654431 1368999999999999999985
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.60 E-value=9e-16 Score=129.56 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=87.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCC-cceeEEEcCCCCCC--CCCCce
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~-~~~~~~~~d~~~~~--~~~~~f 231 (284)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...++ . .+++++++|+.++. +.+++|
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~~i~~~~gda~~~l~~~~~~~f 130 (221)
T 3dr5_A 56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-----SPSRVRFLLSRPLDVMSRLANDSY 130 (221)
T ss_dssp TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHHHGGGSCTTCE
T ss_pred CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcCcEEEEEcCHHHHHHHhcCCCc
Confidence 345999999999999999987643 3799999999999999999876554 3 57999999876642 335799
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccC
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLL 279 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d 279 (284)
|+|++.... .+...+++++.++|||||+|++ +++.-.|.+.+
T Consensus 131 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~-dn~~~~g~v~~ 172 (221)
T 3dr5_A 131 QLVFGQVSP-----MDLKALVDAAWPLLRRGGALVL-ADALLDGTIAD 172 (221)
T ss_dssp EEEEECCCT-----TTHHHHHHHHHHHEEEEEEEEE-TTTTGGGTCSC
T ss_pred CeEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEE-eCCCCCCcCCC
Confidence 999987542 2556799999999999999888 45444444444
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=134.02 Aligned_cols=104 Identities=17% Similarity=0.331 Sum_probs=89.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+..+|||||||+|.++..+++.++. +++++|+ +.+++.+++ ..+++++.+|+.+ +.+.+ |+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~p~~--D~ 264 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA------------FSGVEHLGGDMFD-GVPKG--DA 264 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCCC--SE
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh------------cCCCEEEecCCCC-CCCCC--CE
Confidence 346689999999999999999987655 7999999 889876653 2468999999987 55543 99
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|++.+++|++++++...++++++++|||||+|++.|.+.++
T Consensus 265 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 305 (368)
T 3reo_A 265 IFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP 305 (368)
T ss_dssp EEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 99999999999888889999999999999999999987654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-15 Score=124.15 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=83.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC----CCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD----FTPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~ 229 (284)
..++.+|||+|||+|.++..++.... .+|+|+|+|+.|++.+++++.. ..++.++.+|+.+ .++. +
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~v~~~~~d~~~~~~~~~~~-~ 142 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKPQEYANIV-E 142 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCGGGGTTTS-C
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc--------CCCeEEEECCCCCcccccccC-c
Confidence 45778999999999999999987743 4799999999999999998765 2568899999988 6665 7
Q ss_pred ceeEEEecchhccCChh-hHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~-~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+||+|+ +++++. ....+++++.++|||||.+++.
T Consensus 143 ~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 143 KVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 899999 444433 2357899999999999999996
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=124.46 Aligned_cols=100 Identities=20% Similarity=0.133 Sum_probs=84.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++.... .++++.++|+.+....+++||+|
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~--------~~v~~~~~d~~~~~~~~~~fD~v 138 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY--------NNIKLILGDGTLGYEEEKPYDRV 138 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC--------SSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhc--------CCeEEEECCcccccccCCCccEE
Confidence 4567899999999999999988776 57999999999999999998763 16889999987733345789999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++|+++ ++.++|||||.+++....
T Consensus 139 ~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 139 VVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred EECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 99999999872 588899999999998654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=131.36 Aligned_cols=110 Identities=19% Similarity=0.061 Sum_probs=88.4
Q ss_pred CC-CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 155 NN-QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 155 ~~-~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
.. ++.+|||+|||+|.++..++..+..+|+|+|+++.+++.|++++...++ ..+++++++|+.++. +++++|
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~-----~~~v~~~~~D~~~~~~~~~~~~f 120 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQL-----EDQIEIIEYDLKKITDLIPKERA 120 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGGGGTSCTTCE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-----cccEEEEECcHHHhhhhhccCCc
Confidence 45 6789999999999999988877655899999999999999999876554 346899999998875 446799
Q ss_pred eEEEecchhccC------------------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHL------------------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~------------------~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|+++..+... ...++..+++.+.++|||||.+++.-
T Consensus 121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 999998654332 11346689999999999999999964
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-15 Score=126.93 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=87.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCC---CCCCCCCCCcceeEEEcCCCCC------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP---ENHMAPDMHKATNFFCVPLQDF------ 224 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~---~~~~~~~~~~~~~~~~~d~~~~------ 224 (284)
..++.+|||+|||+|.++..++.+... +|+++|+++.+++.|++++.. .++ ..+++++++|+.++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l-----~~~v~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF-----SARIEVLEADVTLRAKARVE 108 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT-----GGGEEEEECCTTCCHHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC-----cceEEEEeCCHHHHhhhhhh
Confidence 446789999999999999998887643 899999999999999999876 554 34689999999887
Q ss_pred -CCCCCceeEEEecchhccC----------------ChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 225 -TPETGRYDVIWVQWCIGHL----------------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 225 -~~~~~~fD~Iv~~~~l~~~----------------~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+++++||+|+++..+... ....+..+++.+.++|||||.|++.-
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2456799999998443321 22347789999999999999999863
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-16 Score=128.71 Aligned_cols=89 Identities=24% Similarity=0.299 Sum_probs=75.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..+. .+++|+|+|+. ++++.++|+.++++++++||+|+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------------~~~~~~~d~~~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------------DPRVTVCDMAQVPLEDESVDVAV 120 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------------STTEEESCTTSCSCCTTCEEEEE
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------------CceEEEeccccCCCCCCCEeEEE
Confidence 456799999999999988662 46999999976 25678899998888788999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+..++|+ . +...+++++.++|+|||.+++.+...
T Consensus 121 ~~~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 121 FCLSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVSS 154 (215)
T ss_dssp EESCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred Eehhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 9999975 4 67799999999999999999987643
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=136.46 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=88.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..+.. +|+++|+|+.|++.+++++...+. .++++..|+.+.. +++||+|+
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------~~~~~~~d~~~~~--~~~fD~Iv 266 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-------EGEVFASNVFSEV--KGRFDMII 266 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTTTTC--CSCEEEEE
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------CCEEEEccccccc--cCCeeEEE
Confidence 4579999999999999999887754 799999999999999999865432 3567888887654 57899999
Q ss_pred ecchhccC---ChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~---~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++.++|+. ..++...+++++.++|||||.+++..+.
T Consensus 267 ~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 267 SNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp ECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred ECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 99999863 3345789999999999999999998764
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=123.60 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=85.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~I 234 (284)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++...++ ..+++++++|+.++ +..+++||+|
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~fD~i 104 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAERAIDCLTGRFDLV 104 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcHHHhHHhhcCCCCEE
Confidence 35679999999999999988877556899999999999999999876543 34689999998763 3233579999
Q ss_pred EecchhccCChhhHHHHHHHHH--hcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~--r~LkpGG~lii~e~~ 271 (284)
+++..++. .....+++.+. ++|+|||.+++....
T Consensus 105 ~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 105 FLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp EECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred EECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 99877542 24456777776 999999999997553
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-16 Score=130.32 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=88.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--CCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD 232 (284)
.++.+|||||||+|..+..++... ..+|+++|+|+.+++.|++++...++ ..+++++++|+.+... .+++||
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~fD 144 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF-----ENQVRIIEGNALEQFENVNDKVYD 144 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGGCHHHHTTSCEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHHHHHhhccCCcc
Confidence 356799999999999999888633 23799999999999999999876544 3479999999977532 257899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
+|++.... .....+++++.++|||||+|++ +++.-.+.+.++
T Consensus 145 ~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~-d~~~~~g~v~~~ 186 (232)
T 3ntv_A 145 MIFIDAAK-----AQSKKFFEIYTPLLKHQGLVIT-DNVLYHGFVSDI 186 (232)
T ss_dssp EEEEETTS-----SSHHHHHHHHGGGEEEEEEEEE-ECTTGGGGGGCG
T ss_pred EEEEcCcH-----HHHHHHHHHHHHhcCCCeEEEE-eeCCcCccccCc
Confidence 99976542 2566899999999999999877 555555555443
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=134.80 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=89.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+..+|||||||+|..+..+++.++. +++++|+ +.+++.+++ ..+++++.+|+.+ +.+.+ |+
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~-~~p~~--D~ 262 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ------------FPGVTHVGGDMFK-EVPSG--DT 262 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTT-CCCCC--SE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh------------cCCeEEEeCCcCC-CCCCC--CE
Confidence 346689999999999999999987665 7999999 888876653 2468999999987 65543 99
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|++.+++|++++++...++++++++|||||+|++.|.+.++
T Consensus 263 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 303 (364)
T 3p9c_A 263 ILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV 303 (364)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred EEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 99999999999888999999999999999999999987654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-16 Score=130.83 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=84.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC---CCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~f 231 (284)
.++.+|||+|||+|..+..++.... .+|+|+|+|+.|++.|++++...++ .+++++++|+.+++.. +++|
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~f 142 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRESY 142 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTCE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEeccHHHhcccccccCCc
Confidence 3567999999999999998885433 3799999999999999998765432 3589999998877643 5789
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+|++..+ . ++..+++++.++|||||.+++...
T Consensus 143 D~V~~~~~----~--~~~~~l~~~~~~LkpgG~l~~~~g 175 (240)
T 1xdz_A 143 DIVTARAV----A--RLSVLSELCLPLVKKNGLFVALKA 175 (240)
T ss_dssp EEEEEECC----S--CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred cEEEEecc----C--CHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99998763 3 567999999999999999998753
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=126.38 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=85.1
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++.++..+|+++|+|+.|++.|++++...++ .+++++++|+.++ +...++||+|+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~D~~~~~~~~~~~fD~V~ 127 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAMSFLAQKGTPHNIVF 127 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHhhcCCCCCEEE
Confidence 4579999999999999988878776899999999999999999865432 4689999998763 44457899999
Q ss_pred ecchhccCChhhHHHHHHHHHh--cCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r--~LkpGG~lii~e~ 270 (284)
+...++ .. ....+++.+.+ +|+|||.+++..+
T Consensus 128 ~~~p~~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 128 VDPPFR-RG--LLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp ECCSSS-TT--THHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ECCCCC-CC--cHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 987754 23 55578888865 5999999998754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=135.03 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=88.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..++..++ .+|+++|+|+.|++.+++++...++. ...++++...|+.+ .+++++||+
T Consensus 220 ~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~---~~~~v~~~~~D~~~-~~~~~~fD~ 295 (375)
T 4dcm_A 220 ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALS-GVEPFRFNA 295 (375)
T ss_dssp CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGG---GGGGEEEEECSTTT-TCCTTCEEE
T ss_pred ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCC---cCceEEEEechhhc-cCCCCCeeE
Confidence 34558999999999999999998763 48999999999999999988764421 01357889999987 445579999
Q ss_pred EEecchhccC---ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~---~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+++..+|+. .......+++++.++|||||.++++.+
T Consensus 296 Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 296 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp EEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 9999998863 333455789999999999999999765
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-16 Score=148.74 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=90.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (284)
.++.+|||||||+|.++..+++.+.. |+|||+|+.+|+.|+.++...+ ..+++|.+++++++ ..++++||+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~-V~giD~~~~~i~~a~~~a~~~~------~~~~~~~~~~~~~~~~~~~~~~fD~ 137 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEENP------DFAAEFRVGRIEEVIAALEEGEFDL 137 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTST------TSEEEEEECCHHHHHHHCCTTSCSE
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCE-EEEECCCHHHHHHHHHHHHhcC------CCceEEEECCHHHHhhhccCCCccE
Confidence 35689999999999999999988775 9999999999999999887643 24689999999887 355689999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
|+|..+++|+++++....+..+.+.|+++|..++...+.
T Consensus 138 v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 138 AIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp EEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred EEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 999999999987664445566778888888777765543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=127.12 Aligned_cols=107 Identities=12% Similarity=0.120 Sum_probs=81.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCC------CCCCCCCCCcceeEEEcCCCC-CC--
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP------ENHMAPDMHKATNFFCVPLQD-FT-- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~------~~~~~~~~~~~~~~~~~d~~~-~~-- 225 (284)
.++.+|||||||+|.++..++..... .|+|+|+|+.|++.|++++.. .+ ..+++++++|+.+ ++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~------~~nv~~~~~d~~~~l~~~ 118 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGG------FQNIACLRSNAMKHLPNF 118 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCC------CTTEEEEECCTTTCHHHH
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcC------CCeEEEEECcHHHhhhhh
Confidence 46679999999999999998876543 799999999999999876531 11 2579999999987 55
Q ss_pred CCCCceeEEEecchhccCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023288 226 PETGRYDVIWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++++||.|++.+.-.+..... ...+++++.++|||||.|++.
T Consensus 119 ~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 119 FYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp CCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 6678999999765433221000 137999999999999999986
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-14 Score=128.10 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=94.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.....+|+|||||+|.++..++++++. +++..|. |.+++.|+++....+ ..+++++.+|+.+.+++ .+|+
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~------~~rv~~~~gD~~~~~~~--~~D~ 247 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE------EEQIDFQEGDFFKDPLP--EADL 247 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--------CCSEEEEESCTTTSCCC--CCSE
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc------cCceeeecCccccCCCC--CceE
Confidence 445679999999999999999988777 7888886 889999999886533 36799999999765443 5899
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|++.+++|++++++...+|++++++|+|||.++|.|.+.++
T Consensus 248 ~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 248 YILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE 288 (353)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred EEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence 99999999999998999999999999999999999987543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-15 Score=126.88 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=87.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CC--CCCc
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TP--ETGR 230 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~--~~~~ 230 (284)
.++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+. +. ..++
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~~ 136 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----DQRVTLREGPALQSLESLGECPA 136 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHTCCSCCC
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHhcCCCCC
Confidence 3568999999999999998886643 3799999999999999999876554 34789999998663 21 2358
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccC
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLL 279 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d 279 (284)
||+|++... ..+...+++++.++|||||+|++. ++...+.+.+
T Consensus 137 fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~-~~~~~g~v~~ 179 (248)
T 3tfw_A 137 FDLIFIDAD-----KPNNPHYLRWALRYSRPGTLIIGD-NVVRDGEVVN 179 (248)
T ss_dssp CSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEE-CCSGGGGGGC
T ss_pred eEEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEe-CCCcCCcccC
Confidence 999998653 335668999999999999988774 4444444443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-15 Score=127.81 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=92.7
Q ss_pred ccHHHHHHHHHhhcCCccCCCCceEEEeeccc--cHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCc
Q 023288 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (284)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGt--G~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~ 212 (284)
..+.|+.+.+..+.. .....+|||||||+ +..+..++.+.. .+|+++|.|+.|++.|++++...+ ..
T Consensus 61 ~nr~fl~rav~~l~~---~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------~~ 131 (277)
T 3giw_A 61 ANRDWMNRAVAHLAK---EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------EG 131 (277)
T ss_dssp HHHHHHHHHHHHHHH---TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------SS
T ss_pred HHHHHHHHHHHHhcc---ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------CC
Confidence 345566665543321 12346899999997 334444554422 279999999999999999987532 24
Q ss_pred ceeEEEcCCCCCCC----C--CCcee-----EEEecchhccCChhh-HHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 213 ATNFFCVPLQDFTP----E--TGRYD-----VIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 213 ~~~~~~~d~~~~~~----~--~~~fD-----~Iv~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+++|+++|+.++.. + .+.|| .|+++.+|||+++.+ ...+++++.+.|+|||+|++++.+.+
T Consensus 132 ~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 132 RTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp EEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 68999999988520 1 23455 688999999999765 67899999999999999999976543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=128.06 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=87.1
Q ss_pred CCCceEEEeeccccHHHHHHHHh--C-CCcEEEEeCCHHHHHHHHHHcCCC---CCCCCCCCcc----------------
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR--Y-FNEVDLLEPVSHFLDAARESLAPE---NHMAPDMHKA---------------- 213 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~--~-~~~v~gvD~S~~~l~~ar~~~~~~---~~~~~~~~~~---------------- 213 (284)
.++.+|||+|||+|.++..++.. . ..+|+|+|+|+.|++.|++++... ++ ..+
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 124 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL-----TARELERREQSERFGKPSY 124 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH-----HHHHHHHHHHHHHHCCHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc-----cccchhhhhhhhhcccccc
Confidence 35689999999999999988876 2 237999999999999999887653 21 011
Q ss_pred ---------ee-------------EEEcCCCCCCC-----CCCceeEEEecchhccCCh-------hhHHHHHHHHHhcC
Q 023288 214 ---------TN-------------FFCVPLQDFTP-----ETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGL 259 (284)
Q Consensus 214 ---------~~-------------~~~~d~~~~~~-----~~~~fD~Iv~~~~l~~~~~-------~~~~~~l~~~~r~L 259 (284)
++ +.++|+.+... ...+||+|+++..+++... +....+++++.++|
T Consensus 125 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~L 204 (250)
T 1o9g_A 125 LEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASAL 204 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred hhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhc
Confidence 55 89999877432 3348999999987776542 45678999999999
Q ss_pred CCCcEEEEEeccC
Q 023288 260 KPGGFFVLKENIA 272 (284)
Q Consensus 260 kpGG~lii~e~~~ 272 (284)
+|||+++++.+..
T Consensus 205 kpgG~l~~~~~~~ 217 (250)
T 1o9g_A 205 PAHAVIAVTDRSR 217 (250)
T ss_dssp CTTCEEEEEESSS
T ss_pred CCCcEEEEeCcch
Confidence 9999999976543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-15 Score=122.89 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=84.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (284)
.++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++...++ ..+++++++|+.+.. .++++|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~f 117 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRALEQFYEEKLQF 117 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcceEEEECcHHHHHHHHHhcCCCC
Confidence 35679999999999999988876656899999999999999998765432 246899999987632 125789
Q ss_pred eEEEecchhccCChhhHHHHHHHH--HhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~--~r~LkpGG~lii~e~ 270 (284)
|+|+++..++.. .....++.+ .++|+|||.+++...
T Consensus 118 D~i~~~~~~~~~---~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 118 DLVLLDPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp EEEEECCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CEEEECCCCCch---hHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 999998886532 334666666 899999999998754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-15 Score=132.29 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=87.1
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|++++...++ ..+++++.+|+.++++++++||+|++
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~~~~D~Ivs 111 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGF-----SDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCC-----CCCEEEEECchhhccCCCCcccEEEE
Confidence 567999999999999998887766689999999 599999998876544 35689999999998877779999999
Q ss_pred cchhccCC-hhhHHHHHHHHHhcCCCCcEEEE
Q 023288 237 QWCIGHLT-DDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 237 ~~~l~~~~-~~~~~~~l~~~~r~LkpGG~lii 267 (284)
.++.+++. ...+..++.++.++|||||.++.
T Consensus 112 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 86544442 23577899999999999999974
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=135.34 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=87.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||||||+|.++..+++.++. +++++|+ +.|++.+++. .+++++.+|+.+ +++. ||+|
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~-~~~~--~D~v 271 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL------------SGIEHVGGDMFA-SVPQ--GDAM 271 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------------TTEEEEECCTTT-CCCC--EEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc------------CCCEEEeCCccc-CCCC--CCEE
Confidence 45689999999999999999987754 7888899 9999876541 358999999987 5543 9999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
++..++||+++++...++++++++|||||++++.|.+.++
T Consensus 272 ~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 311 (372)
T 1fp1_D 272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 311 (372)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred EEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 9999999999877789999999999999999999876543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-15 Score=125.32 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=80.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcC----CCCCCCCCCCcceeEEEcCCCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLA----PENHMAPDMHKATNFFCVPLQDFTPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (284)
..++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.+.++.. ..+ ..++++.++|+.+++++++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~------~~~v~~~~~d~~~l~~~~~ 98 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG------LPNLLYLWATAERLPPLSG 98 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC------CTTEEEEECCSTTCCSCCC
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC------CCceEEEecchhhCCCCCC
Confidence 35678999999999999999998753 379999999999986433322 222 2478999999999887765
Q ss_pred ceeEEEe---cchh--ccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWV---QWCI--GHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~---~~~l--~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+ |.|+. ...+ +|+++. ..+++++.++|||||.+++..
T Consensus 99 ~-d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 99 V-GELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp E-EEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEE
T ss_pred C-CEEEEEccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEe
Confidence 5 66653 2333 266533 589999999999999999964
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-15 Score=125.94 Aligned_cols=107 Identities=10% Similarity=0.082 Sum_probs=83.6
Q ss_pred CCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-C-CC----C
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-PE----T 228 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~----~ 228 (284)
++.+|||||||+|..+..+++.. ..+|+++|+|+.|++.|++++...++ ..+++++++|+.+. + .. .
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~~~ 132 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----QDKVTILNGASQDLIPQLKKKYDV 132 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHGGGTTTTSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----CCceEEEECCHHHHHHHHHHhcCC
Confidence 56799999999999999888643 23799999999999999998876543 34689999997542 2 11 2
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++||+|++....++.. +...++..+ ++|||||+|++.+..
T Consensus 133 ~~fD~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 133 DTLDMVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp CCCSEEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred CceEEEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCC
Confidence 6899999988777654 444677777 999999999886543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=129.62 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=87.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++...++ ..+++++++|+.++.. +++||+|+
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~-----~~~v~~~~~D~~~~~~-~~~fD~Vi 197 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPG-ENIADRIL 197 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECCHHHhcc-cCCccEEE
Confidence 35789999999999999999987766799999999999999999876554 2358899999998876 57999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+.... ....++.++.++|||||.+++.++.
T Consensus 198 ~~~p~------~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 198 MGYVV------RTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCch------hHHHHHHHHHHHCCCCeEEEEEEee
Confidence 86542 2247899999999999999998764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.9e-15 Score=130.28 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=85.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||||||+|.++..+++.+.. +|+++|+|+.+++.|++++...++ .++++.++|+.+...++++||
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD 146 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYD 146 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEE
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCeEEEECChhhccccCCCeE
Confidence 457789999999999999988876542 599999999999999999865443 358899999987655557899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++..+++|++ +++.++|||||.+++...
T Consensus 147 ~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 147 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp EEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred EEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 999999999987 357889999999999854
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-15 Score=122.41 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=83.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++++...+. .++++.+.|+......+++||
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD 148 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------DNVIVIVGDGTLGYEPLAPYD 148 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCCCCCee
Confidence 45778999999999999999887763 4799999999999999998754332 358889998854333356899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++..+++|++ +++.++|||||.+++...
T Consensus 149 ~v~~~~~~~~~~--------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 149 RIYTTAAGPKIP--------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEESSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHHH--------HHHHHHcCCCcEEEEEEC
Confidence 999999999987 268899999999999865
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-15 Score=138.23 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=90.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|++++...++ ..+++++.+|+.+++++ ++||+|
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl-----~~~v~~~~~d~~~~~~~-~~fD~I 228 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVEEVSLP-EQVDII 228 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEE
T ss_pred hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCC-----CCcEEEEECchhhCccC-CCeEEE
Confidence 346789999999999999988876555899999998 99999998876544 35799999999987655 589999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+++.+++|+..++....+.++.++|||||.+++
T Consensus 229 vs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 229 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp ECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred EEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999888888766777888899999999999985
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-15 Score=125.95 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=85.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC---CCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~f 231 (284)
.++.+|||||||+|..+..++..... +|+++|+|+.+++.|++++...++ .+++++++|+++++.. .++|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l------~~v~~~~~d~~~~~~~~~~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL------KGARALWGRAEVLAREAGHREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEECCHHHHTTSTTTTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CceEEEECcHHHhhcccccCCCc
Confidence 46789999999999999988876443 799999999999999999876543 3589999999887642 3789
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+|++..+ . ++..+++.+.++|||||.+++...
T Consensus 153 D~I~s~a~----~--~~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 153 ARAVARAV----A--PLCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp EEEEEESS----C--CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred eEEEECCc----C--CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999654 2 556899999999999999998653
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-15 Score=120.95 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=85.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++++...+. ..++++.+.|+.+.....++||+|
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v 104 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAPEALCKIPDIDIA 104 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecCHHHhcccCCCCCEE
Confidence 4577899999999999999888666 6799999999999999998765432 246888998876621112589999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..++++ +..+++++.++|+|||.+++...
T Consensus 105 ~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 105 VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCchHH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 99887754 45899999999999999999754
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-15 Score=132.47 Aligned_cols=103 Identities=13% Similarity=0.236 Sum_probs=87.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.+..+|||||||+|.++..+++.++. +++++|+ +.|++.|++. .++++..+|+.+ +.+ .||+|
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~~v~~~~~d~~~-~~p--~~D~v 250 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------------NNLTYVGGDMFT-SIP--NADAV 250 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------------TTEEEEECCTTT-CCC--CCSEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------------CCcEEEeccccC-CCC--CccEE
Confidence 45679999999999999999987644 7999999 9999877541 348999999976 444 39999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCC---CcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~Lkp---GG~lii~e~~~~~ 274 (284)
++.+++||+++++...++++++++||| ||++++.|.+.++
T Consensus 251 ~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 293 (352)
T 1fp2_A 251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293 (352)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred EeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence 999999999987777999999999999 9999999976543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.56 E-value=9.5e-15 Score=121.23 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=83.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|||+|||+|..+..++.... .+++++|+|+.+++.+++++...+. .++++.++|+.+++ +.++||+|+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~-~~~~~D~i~ 137 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEEFP-SEPPFDGVI 137 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTTSC-CCSCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEecchhhCC-ccCCcCEEE
Confidence 367999999999999998887643 3799999999999999998765432 34889999998876 346899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+..+ . +...+++++.++|+|||.+++...
T Consensus 138 ~~~~----~--~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 138 SRAF----A--SLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp CSCS----S--SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred Eecc----C--CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 8643 2 556899999999999999999754
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.8e-15 Score=118.60 Aligned_cols=97 Identities=21% Similarity=0.089 Sum_probs=80.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++. . .++++.++|+.+ +.++++||+|+
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~---------~~~~~~~~d~~~-~~~~~~fD~i~ 83 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H---------RGGNLVRADLLC-SINQESVDVVV 83 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C---------SSSCEEECSTTT-TBCGGGCSEEE
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c---------cCCeEEECChhh-hcccCCCCEEE
Confidence 356799999999999999888666 79999999999987 1 347899999987 44557999999
Q ss_pred ecchhccCChh-------hHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDD-------DFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~-------~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++.++. +...+++++.+.| |||.+++.+..
T Consensus 84 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 84 FNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp ECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred ECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 99998876543 3457889999999 99999998753
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=124.50 Aligned_cols=110 Identities=9% Similarity=0.076 Sum_probs=82.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHc-----CCCCCCCCCCCcceeEEEcCCCCCC--C-
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP-VSHFLDAARESL-----APENHMAPDMHKATNFFCVPLQDFT--P- 226 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~-S~~~l~~ar~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~--~- 226 (284)
.++.+|||+|||+|.++..++..+..+|+++|+ |+.+++.|++++ ...++.. ....++++...+..+.. .
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSET-VKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccccc-CCCCCeEEEEecCCCccHHHH
Confidence 466799999999999999888766558999999 899999999998 4332200 00035777766655431 1
Q ss_pred ---CCCceeEEEecchhccCChhhHHHHHHHHHhcCC---C--CcEEEEE
Q 023288 227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK---P--GGFFVLK 268 (284)
Q Consensus 227 ---~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~Lk---p--GG~lii~ 268 (284)
++++||+|++..+++|.+ +...+++.+.++|+ | ||.+++.
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 347899999999999866 67799999999999 9 9987765
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-15 Score=130.83 Aligned_cols=112 Identities=13% Similarity=0.196 Sum_probs=88.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC------C
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------T 228 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------~ 228 (284)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+.... +
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~~~~~~~~ 134 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----EHKIKLRLGPALDTLHSLLNEGGE 134 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHHHCS
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHhhccCC
Confidence 567999999999999999887543 3799999999999999999876554 35799999998664321 3
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccC
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLL 279 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d 279 (284)
++||+|++... ..+...+++++.++|||||+|++ +++.-.+.+.+
T Consensus 135 ~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~-d~~~~~g~v~~ 179 (242)
T 3r3h_A 135 HQFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAI-DNIFWDGKVID 179 (242)
T ss_dssp SCEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEE-ECSSSSSCSSC
T ss_pred CCEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEE-ECCccCCcccC
Confidence 78999998654 23567899999999999999888 45454555444
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.7e-14 Score=130.36 Aligned_cols=115 Identities=13% Similarity=-0.017 Sum_probs=87.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHH-------HHHcCCCCCCCCCCCcceeEEEcCCCCC--
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAA-------RESLAPENHMAPDMHKATNFFCVPLQDF-- 224 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~a-------r~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 224 (284)
..++.+|||||||+|.++..++.... .+|+|+|+|+.+++.| ++++...++. ..+++++++|....
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----~~nV~~i~gD~~~~~~ 315 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----LNNVEFSLKKSFVDNN 315 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----CCCEEEEESSCSTTCH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----CCceEEEEcCcccccc
Confidence 45788999999999999998887543 4799999999999988 7776544310 14688888754321
Q ss_pred CC--CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCc
Q 023288 225 TP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276 (284)
Q Consensus 225 ~~--~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (284)
++ ..++||+|+++.++ +. +++..+++++.++|||||.|++.+...+..+
T Consensus 316 ~~~~~~~~FDvIvvn~~l-~~--~d~~~~L~el~r~LKpGG~lVi~d~f~p~~~ 366 (433)
T 1u2z_A 316 RVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRSLTY 366 (433)
T ss_dssp HHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred ccccccCCCCEEEEeCcc-cc--ccHHHHHHHHHHhCCCCeEEEEeeccCCccc
Confidence 11 23689999988766 22 3677899999999999999999987655543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.1e-15 Score=125.73 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=87.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-C-C-----C
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-----E 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~ 227 (284)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+. + . +
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~l~~~~~~ 153 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALPVLDEMIKDEKN 153 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHSGGG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHHHHHHHHhccCC
Confidence 567999999999999999987643 3799999999999999999876544 35789999988654 2 1 1
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
+++||+|++... ..+...+++++.++|||||+|++ +++...+.+.++
T Consensus 154 ~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~-d~~~~~g~v~~~ 200 (247)
T 1sui_A 154 HGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGY-DNTLWNGSVVAP 200 (247)
T ss_dssp TTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEE-ECTTGGGGGGCC
T ss_pred CCCEEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEE-ecCCcCCcccCC
Confidence 468999998654 22567899999999999999877 454444544443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-15 Score=124.82 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=77.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCC-HHHHHHH---HHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPV-SHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQDFTPE-TG 229 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S-~~~l~~a---r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 229 (284)
.++.+|||||||+|.++..++..... +|+|+|+| +.|++.| +++....++ .++++.++|+.+++.. .+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------~~v~~~~~d~~~l~~~~~d 96 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------SNVVFVIAAAESLPFELKN 96 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------SSEEEECCBTTBCCGGGTT
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------CCeEEEEcCHHHhhhhccC
Confidence 46789999999999999988865443 79999999 7777776 666554432 4689999999988532 24
Q ss_pred ceeEEEecchhccC---ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~---~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+|.|++++...+. ...+...++++++++|||||.+++.
T Consensus 97 ~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 97 IADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp CEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred eEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 56666665432211 0012246899999999999999994
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=120.73 Aligned_cols=102 Identities=15% Similarity=-0.010 Sum_probs=80.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC---CCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~ 229 (284)
..++.+|||+|||+|.++..+++.. . .+|+|+|+|+.|++.+.++... ..++++.++|+.+. +..++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--------RTNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------CTTEEEECSCTTCGGGGGGGCC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--------cCCeEEEEcccCChhhhcccCC
Confidence 5577899999999999999998763 2 4799999999988777766543 24688999999873 33457
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+||+|++... ..+....++.++.++|||||.+++.
T Consensus 147 ~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 147 MVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp CEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 8999998655 2223456788999999999999995
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=116.84 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=83.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++. ...+++++|+|+.+++.+++++...++ .++++.++|+.+ ++++++||+|
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-~~~~~~~D~i 104 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI------KNCQIIKGRAED-VLDKLEFNKA 104 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC------CSEEEEESCHHH-HGGGCCCSEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC------CcEEEEECCccc-cccCCCCcEE
Confidence 45678999999999999998886 445799999999999999999865432 458899999877 4555789999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++..+ .+...+++++.++ |||.+++...
T Consensus 105 ~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 105 FIGGT------KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp EECSC------SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred EECCc------ccHHHHHHHHhhC--CCCEEEEEec
Confidence 99988 2566899999998 9999999864
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-14 Score=123.41 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=82.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++.. ++.+...|+.++++++++||+|
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~~~~d~~~~~~~~~~fD~v 152 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP-----------QVTFCVASSHRLPFSDTSMDAI 152 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCTTSCSBCTTCEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC-----------CcEEEEcchhhCCCCCCceeEE
Confidence 467899999999999999888763 3379999999999999998852 3788999999888777899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
++..+. .+++++.++|||||.+++.....
T Consensus 153 ~~~~~~---------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 153 IRIYAP---------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp EEESCC---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred EEeCCh---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 987652 35889999999999999987543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-15 Score=125.01 Aligned_cols=107 Identities=13% Similarity=0.022 Sum_probs=66.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC-----C
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-----G 229 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~ 229 (284)
.++.+|||+|||+|.++..++..+.. +++|+|+|+.|++.|++++...+ .+++++++|+.+ ++++ +
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~-~~~~~~~~~~ 100 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG-------AVVDWAAADGIE-WLIERAERGR 100 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------CCHHHHHH-HHHHHHHTTC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC-------CceEEEEcchHh-hhhhhhhccC
Confidence 57789999999999999999987644 79999999999999999887642 156777788766 3333 7
Q ss_pred ceeEEEecchhccC------Chhh------------------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCIGHL------TDDD------------------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~------~~~~------------------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+||+|+++..+++. +... +..+++++.++|||||.+++.+.
T Consensus 101 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 101 PWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp CBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred cccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 99999997554332 2111 16889999999999999555443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-14 Score=118.81 Aligned_cols=104 Identities=13% Similarity=-0.025 Sum_probs=76.8
Q ss_pred ccCCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CC
Q 023288 153 ARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (284)
Q Consensus 153 ~~~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~ 227 (284)
....++.+|||+|||+|..+..+++... .+|+++|+|+.|++...+.... ..++.++++|+.... ..
T Consensus 72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~--------r~nv~~i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR--------RPNIFPLLADARFPQSYKSV 143 (232)
T ss_dssp CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH--------CTTEEEEECCTTCGGGTTTT
T ss_pred cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCeEEEEcccccchhhhcc
Confidence 3467889999999999999998887533 2799999999997655443322 246889999987642 12
Q ss_pred CCceeEEEecchhccCChhhHHH-HHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVS-FFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~-~l~~~~r~LkpGG~lii~e 269 (284)
.++||+|++.... + +... +...+.+.|||||.|+++.
T Consensus 144 ~~~~D~I~~d~a~---~--~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 144 VENVDVLYVDIAQ---P--DQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp CCCEEEEEECCCC---T--THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccceEEEEecCCC---h--hHHHHHHHHHHHhCCCCeEEEEEE
Confidence 3689999988653 2 3334 4556667999999999984
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-14 Score=121.17 Aligned_cols=105 Identities=19% Similarity=0.123 Sum_probs=82.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC----C-C
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----E-T 228 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~-~ 228 (284)
.++.+|||||||+|..+..++.... .+|+++|+++.+++.|++++...++ ..+++++++|+.+... . .
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~ 131 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----NDRVEVRTGLALDSLQQIENEKY 131 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTC
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcCC
Confidence 3568999999999999999887643 3799999999999999999876544 3458999999865321 1 1
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++||+|++.... .....+++++.++|||||++++.+.
T Consensus 132 ~~fD~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 132 EPFDFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CCCSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred CCcCEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 579999987652 3556899999999999997777543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.3e-15 Score=123.25 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=83.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CC----C
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE----T 228 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~----~ 228 (284)
++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+.. .. .
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~ 138 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----SDKIGLRLSPAKDTLAELIHAGQA 138 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHTTTCT
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeCCHHHHHHHhhhccCC
Confidence 567999999999999998886532 3799999999999999999876544 345899999885532 11 1
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++||+|++... ..+...+++++.++|||||+|++.+..
T Consensus 139 ~~fD~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 139 WQYDLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp TCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CCccEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 68999996554 235678999999999999999986543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-14 Score=129.84 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=86.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|.++...++.+..+|++||.|+ |++.|++.+..+++ ..+++++.++++++.++ .+||+||+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~-----~~~i~~i~~~~~~~~lp-e~~Dvivs 155 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGL-----EDRVHVLPGPVETVELP-EQVDAIVS 155 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTC-----TTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCC-----CceEEEEeeeeeeecCC-ccccEEEe
Confidence 5679999999999999977777777999999996 89999998877665 46799999999998776 68999998
Q ss_pred cchhccCChh-hHHHHHHHHHhcCCCCcEEEE
Q 023288 237 QWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 237 ~~~l~~~~~~-~~~~~l~~~~r~LkpGG~lii 267 (284)
.+.-..+..+ .+..++....+.|||||.++-
T Consensus 156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 156 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 6554433322 577899999999999998875
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-15 Score=133.42 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=85.3
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeecc------ccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSG------IGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPD 209 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcG------tG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~ 209 (284)
...++..++... ..++.+||||||| +|..+..+++.++ .+|+|+|+|+.|. . .
T Consensus 202 y~~~Ye~lL~~l-----~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-~------- 262 (419)
T 3sso_A 202 FTPHYDRHFRDY-----RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-D------- 262 (419)
T ss_dssp CHHHHHHHHGGG-----TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-C-------
T ss_pred HHHHHHHHHHhh-----cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-c-------
Confidence 445566655433 2356899999999 7777777776642 2799999999983 1 1
Q ss_pred CCcceeEEEcCCCCCCCC------CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 210 MHKATNFFCVPLQDFTPE------TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 210 ~~~~~~~~~~d~~~~~~~------~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
..+++|+++|+.++++. +++||+|++... |++. +...+|+++.++|||||+|++.|..
T Consensus 263 -~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~--d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 263 -ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HINA--HVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp -BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCHH--HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred -CCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccch--hHHHHHHHHHHhcCCCeEEEEEecc
Confidence 35799999999987665 579999998754 5544 6779999999999999999998865
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=116.45 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=81.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 229 (284)
..++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+++++.. ..+++++++|+.+.. ..++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGGGGTTTCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc--------cCCCEEEEccCCCcchhhcccC
Confidence 5577899999999999999988763 2 4799999999999999998875 256899999998732 1235
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+||+|++... .+ .....+++++.++|||||.+++.
T Consensus 143 ~~D~v~~~~~---~~-~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 143 KVDVIFEDVA---QP-TQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCC---ST-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCC---CH-hHHHHHHHHHHHhcCCCCEEEEE
Confidence 8999997655 11 23345599999999999999997
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=120.58 Aligned_cols=102 Identities=12% Similarity=0.123 Sum_probs=81.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 233 (284)
++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...++ ..+++++++|..+. +..++ ||+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~-fD~ 129 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----IDRVELQVGDPLGIAAGQRD-IDI 129 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----GGGEEEEESCHHHHHTTCCS-EEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CceEEEEEecHHHHhccCCC-CCE
Confidence 457999999999999998886543 3799999999999999998765432 34689999988654 33345 999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|++... ..+...+++++.++|||||.+++.+
T Consensus 130 v~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 130 LFMDCD-----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEETT-----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred EEEcCC-----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 998743 2356789999999999999988744
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-14 Score=121.87 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=82.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCC--CCcceeEEEcCCCC-CC--CCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPD--MHKATNFFCVPLQD-FT--PETG 229 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~--~~~~~~~~~~d~~~-~~--~~~~ 229 (284)
.++.+|||||||+|.++..++..+.. .|+|+|+|+.+++.+++++......+.. ...+++++++|+.+ ++ ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 46789999999999999999987754 7999999999999998876432000000 02468999999987 44 5678
Q ss_pred ceeEEEecchhccCChh------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++|.|++...-.+.... -...+++++.++|+|||.|++.
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 99999855321111000 0147999999999999999995
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-14 Score=122.58 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=85.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHcCCC-CCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~-~~~v~gvD~S~~~l~~ar~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
..++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|++++... + ..++++.++|+.+ ++++++|
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g------~~~v~~~~~d~~~-~~~~~~f 180 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD------IGNVRTSRSDIAD-FISDQMY 180 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC------CTTEEEECSCTTT-CCCSCCE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC------CCcEEEEECchhc-cCcCCCc
Confidence 567789999999999999998876 2 237999999999999999998654 3 2468899999987 4455789
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|++ +++ +...+++++.++|||||.+++....
T Consensus 181 D~Vi~-----~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 181 DAVIA-----DIP--DPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp EEEEE-----CCS--CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred cEEEE-----cCc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99998 444 3348999999999999999998653
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=121.31 Aligned_cols=104 Identities=13% Similarity=0.212 Sum_probs=84.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCC--CCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPE--TGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~f 231 (284)
.++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...+. ..++++.++|+.+. +.. +++|
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~f 127 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-----ESRIELLFGDALQLGEKLELYPLF 127 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGSHHHHTTSCCE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECCHHHHHHhcccCCCc
Confidence 3567999999999999999887753 4799999999999999999865443 24688999998774 221 4689
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|++....+ +...+++++.++|+|||.+++.+
T Consensus 128 D~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 128 DVLFIDAAKG-----QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEEGGGS-----CHHHHHHHHGGGEEEEEEEEEET
T ss_pred cEEEECCCHH-----HHHHHHHHHHHHcCCCeEEEEEc
Confidence 9999987743 56689999999999999999864
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-15 Score=118.10 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=80.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--C--CCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P--ETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~--~~~~fD 232 (284)
++.+|||+|||+|.++..++..+.. |+|+|+|+.|++.|++++...+ .+++++++|+.+.. . ..++||
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~D 112 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTG-------LGARVVALPVEVFLPEAKAQGERFT 112 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHT-------CCCEEECSCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcC-------CceEEEeccHHHHHHhhhccCCceE
Confidence 5679999999999999999877665 9999999999999999876432 15788999887632 1 124799
Q ss_pred EEEecchhccCChhhHHHHHHHHH--hcCCCCcEEEEEecc
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~--r~LkpGG~lii~e~~ 271 (284)
+|+++.+++ . ....+++.+. ++|+|||.+++....
T Consensus 113 ~i~~~~~~~--~--~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 113 VAFMAPPYA--M--DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp EEEECCCTT--S--CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred EEEECCCCc--h--hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 999998776 2 2235666666 999999999997553
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=121.26 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=88.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--C-----C
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P-----E 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-----~ 227 (284)
++.+|||||||+|..+..+++... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+.. . +
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda~~~l~~l~~~~~~ 144 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----EHKINFIESDAMLALDNLLQGQES 144 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhccCC
Confidence 567999999999999999987643 3899999999999999999876544 356899999876531 1 2
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
+++||+|++... ..+...+++++.++|+|||.+++ +++...+.+.++
T Consensus 145 ~~~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~-d~~~~~g~~~~~ 191 (237)
T 3c3y_A 145 EGSYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAY-DNTLWGGTVAQP 191 (237)
T ss_dssp TTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEE-ECTTGGGGGGSC
T ss_pred CCCcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEE-ecCCcCCccCCC
Confidence 468999998643 23567899999999999998876 555555555443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=119.97 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=82.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC-CceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~fD~ 233 (284)
..++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.|++++...++ .++++..+|+ ..++++ .+||+
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~-~~~~~~~~~fD~ 161 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDG-SKGFPPKAPYDV 161 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCG-GGCCGGGCCEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------CCcEEEECCc-ccCCCCCCCccE
Confidence 456789999999999999988877635699999999999999998765442 3588899987 233333 35999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|++..+++++++ ++.+.|||||.+++.-.
T Consensus 162 Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 162 IIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp EEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred EEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 999999998872 57889999999999755
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-14 Score=125.37 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=72.9
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCccee-EEEcCCCCCC---CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT---PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~-~~~~d~~~~~---~~~~~fD 232 (284)
++.+|||+|||||.++..+++.+..+|+|+|+|+.|++.+.++.. ++. +...++..+. ++..+||
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~-----------rv~~~~~~ni~~l~~~~l~~~~fD 153 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD-----------RVRSMEQYNFRYAEPVDFTEGLPS 153 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT-----------TEEEECSCCGGGCCGGGCTTCCCS
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------ccceecccCceecchhhCCCCCCC
Confidence 567999999999999998888877689999999999998654321 111 1122332222 2334699
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++..+++++ ..++.++.++|||||.+++.
T Consensus 154 ~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 154 FASIDVSFISL-----NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp EEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEE
T ss_pred EEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEE
Confidence 99998888765 37999999999999999987
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=123.27 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=84.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||+|||+|.++..++.... .+|+++|+|+.+++.+++++...+. .++++.++|+.+. .++++||+|
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~------~~v~~~~~d~~~~-~~~~~fD~I 180 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFSA-LAGQQFAMI 180 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTGG-GTTCCEEEE
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEcchhhh-cccCCccEE
Confidence 3567999999999999999886643 3799999999999999998765432 3588999998764 335689999
Q ss_pred Eecch-------------hccCCh----------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWC-------------IGHLTD----------DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~-------------l~~~~~----------~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+++.. ++|-+. .....+++++.++|+|||++++..
T Consensus 181 v~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 181 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99843 333321 245789999999999999999863
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-14 Score=124.96 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=83.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...+. . +++.++|+.+. +++++||+|+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~------~-v~~~~~d~~~~-~~~~~fD~Vv 189 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV------R-PRFLEGSLEAA-LPFGPFDLLV 189 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC------C-CEEEESCHHHH-GGGCCEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECChhhc-CcCCCCCEEE
Confidence 3678999999999999998887666 799999999999999998765432 1 77888887652 3346899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++...+ .+..++.++.++|||||.+++++..
T Consensus 190 ~n~~~~-----~~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 190 ANLYAE-----LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp EECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCcHH-----HHHHHHHHHHHHcCCCCEEEEEeec
Confidence 976554 3558999999999999999998643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-14 Score=120.91 Aligned_cols=103 Identities=21% Similarity=0.171 Sum_probs=84.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++...++ ..++++.+.|+.+. +++++||
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~D 164 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DDRVTIKLKDIYEG-IEEENVD 164 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----TTTEEEECSCGGGC-CCCCSEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----CCceEEEECchhhc-cCCCCcC
Confidence 567889999999999999999887 3 34799999999999999999865443 23489999998865 4567899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++. .+ +...+++++.++|+|||.+++...
T Consensus 165 ~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 165 HVILD-----LP--QPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp EEEEC-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred EEEEC-----CC--CHHHHHHHHHHHcCCCCEEEEEEC
Confidence 99984 33 334799999999999999999764
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-14 Score=113.32 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=81.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+|||+|||+|.++..+++.. . .+++++|+|+ |++. .++++.+.|+.+.+
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------VGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------TTEEEEESCTTSHHHHHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------CcEEEEEcccccchhhhhhhc
Confidence 3567799999999999999988773 3 4899999998 7531 35788999998875
Q ss_pred -CCCCceeEEEecchhccCChhh---------HHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~---------~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+++++||+|+++.++++..... ...+++++.++|+|||.+++.+...
T Consensus 83 ~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred cCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 5667999999999888776331 1589999999999999999976543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-14 Score=127.34 Aligned_cols=101 Identities=14% Similarity=0.271 Sum_probs=86.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
+..+|||||||+|.++..+++.++. +++++|+ +.+++.+++ ..++++..+|+.+ +.+ +||+|+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~-~~~--~~D~v~ 256 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------------NENLNFVGGDMFK-SIP--SADAVL 256 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------------CSSEEEEECCTTT-CCC--CCSEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------------CCCcEEEeCccCC-CCC--CceEEE
Confidence 5579999999999999999987654 7999999 788876653 1348999999987 544 499999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCC---CcEEEEEeccCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLKENIAR 273 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~Lkp---GG~lii~e~~~~ 273 (284)
+..++||+++++...+++++.++|+| ||++++.|.+.+
T Consensus 257 ~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 257 LKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID 297 (358)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred EcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence 99999999987788999999999999 999999997654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-14 Score=120.29 Aligned_cols=112 Identities=12% Similarity=0.153 Sum_probs=85.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCC--
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET-- 228 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~-- 228 (284)
++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...++ ..++++.++|+.+. +.++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~l~~l~~~~~~ 146 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----AEKISLRLGPALATLEQLTQGKPL 146 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHTSSSC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhcCCC
Confidence 457999999999999998886543 3799999999999999998765443 34688999986542 2222
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccC
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLL 279 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d 279 (284)
++||+|++... ..+...+++++.++|+|||+|++.+ +...+.+.+
T Consensus 147 ~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~-~~~~g~~~~ 191 (232)
T 3cbg_A 147 PEFDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDN-VLWHGKVTE 191 (232)
T ss_dssp CCEEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEEC-TTGGGGGGC
T ss_pred CCcCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeC-CCcCCccCC
Confidence 68999998654 2366789999999999999998854 444444443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-14 Score=123.04 Aligned_cols=104 Identities=10% Similarity=0.109 Sum_probs=83.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-C-------
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T------- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~------- 225 (284)
.++.+|||||||+|..+..++.... .+|+++|+|+.+++.|++++...+. ..++++.++|+.+. +
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~v~~~~~d~~~~~~~~~~~~~ 133 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----ENKIFLKLGSALETLQVLIDSKS 133 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHCSS
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHHHHHHHHhhcc
Confidence 3567999999999999999987753 4899999999999999999865443 24588999887542 1
Q ss_pred -------CCC--CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 -------PET--GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 -------~~~--~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+++ ++||+|++.... ++...+++++.++|+|||.+++.+
T Consensus 134 ~~~~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 134 APSWASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp CCGGGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 122 689999987553 356689999999999999999864
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-14 Score=123.74 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=83.4
Q ss_pred CceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeEE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVI 234 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~I 234 (284)
+.+|||||||+|.++..+++.+.. +|++||+++.|++.|++++.... ..+++++.+|..++. .++++||+|
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~------~~rv~v~~~Da~~~l~~~~~~~fDvI 163 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR------APRVKIRVDDARMVAESFTPASRDVI 163 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC------TTTEEEEESCHHHHHHTCCTTCEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC------CCceEEEECcHHHHHhhccCCCCCEE
Confidence 359999999999999999875433 79999999999999999986421 357899999987652 345789999
Q ss_pred EecchhccCChhhH--HHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~--~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++....+......+ ..++++++++|+|||+|++.-.
T Consensus 164 i~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 164 IRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp EECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 98654432221222 5899999999999999988643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-14 Score=122.47 Aligned_cols=100 Identities=18% Similarity=0.032 Sum_probs=68.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~fD~I 234 (284)
.++.+|||||||||.++..+++.+..+|+|+|+|+.|++.++++....... ...++.+.. .++....+...+||++
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~D~v 112 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM---EQFNFRNAVLADFEQGRPSFTSIDVS 112 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE---CSCCGGGCCGGGCCSCCCSEEEECCS
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc---ccceEEEeCHhHcCcCCCCEEEEEEE
Confidence 356799999999999999999886668999999999999988765421000 001222222 2332211222355555
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++ + ..+++++.++|||||.+++.
T Consensus 113 ~~~-----l-----~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 113 FIS-----L-----DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp SSC-----G-----GGTHHHHHHHSCTTCEEEEE
T ss_pred hhh-----H-----HHHHHHHHHhccCCCEEEEE
Confidence 443 2 37999999999999999986
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-14 Score=117.76 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=77.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC---CCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~f 231 (284)
..++.+|||+|||. +++|+|+.|++.|+++... ++++.++|+.++++ ++++|
T Consensus 10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~----------~~~~~~~d~~~~~~~~~~~~~f 64 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN----------EGRVSVENIKQLLQSAHKESSF 64 (176)
T ss_dssp CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT----------TSEEEEEEGGGGGGGCCCSSCE
T ss_pred CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc----------CcEEEEechhcCccccCCCCCE
Confidence 56789999999996 2399999999999998643 37899999998876 67899
Q ss_pred eEEEecchhccC-ChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~-~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|+++.++||+ + +...++++++++|||||+|++.+..
T Consensus 65 D~V~~~~~l~~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~ 103 (176)
T 2ld4_A 65 DIILSGLVPGSTTL--HSAEILAEIARILRPGGCLFLKEPV 103 (176)
T ss_dssp EEEEECCSTTCCCC--CCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEECChhhhccc--CHHHHHHHHHHHCCCCEEEEEEccc
Confidence 999999999999 6 5569999999999999999997553
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-14 Score=125.77 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=81.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--CCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~fD 232 (284)
.++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++..... .....+++++.+|+.++.. .+++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~~~~fD 171 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR--SLADPRATVRVGDGLAFVRQTPDNTYD 171 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHHhccCCcee
Confidence 456899999999999999888553 34899999999999999998731000 0013568999999877542 357899
Q ss_pred EEEecchhccCChhhH--HHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~--~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++....++.+...+ ..+++++.++|||||++++..
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9999776655443333 589999999999999999964
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.6e-14 Score=118.90 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=83.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC------CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~------~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 225 (284)
..++.+|||||||+|.++..++.... .+|+++|+|+.+++.|++++...++... ...++++.++|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL-KIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG-SSTTEEEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccc-ccCCEEEEECChHhccccc
Confidence 45678999999999999998887654 2799999999999999998754321000 0136889999988754
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
...++||+|++...++++. +++.++|||||++++.-.
T Consensus 157 ~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence 4457899999999888754 667899999999999743
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.8e-14 Score=119.53 Aligned_cols=104 Identities=22% Similarity=0.245 Sum_probs=85.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHcCCC-CCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~-~~~v~gvD~S~~~l~~ar~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
..++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++.|++++... + ..++++...|+.+.++++++|
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g------~~~v~~~~~d~~~~~~~~~~~ 167 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ------VENVRFHLGKLEEAELEEAAY 167 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------CCCEEEEESCGGGCCCCTTCE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC------CCCEEEEECchhhcCCCCCCc
Confidence 457789999999999999999877 3 347999999999999999987542 2 246889999998876666799
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|++. .+ +...+++++.++|+|||.+++.+..
T Consensus 168 D~v~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 168 DGVALD-----LM--EPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp EEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred CEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 999983 34 3347999999999999999998753
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=115.82 Aligned_cols=103 Identities=22% Similarity=0.284 Sum_probs=84.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++....++ ..++++...|+.+...++++||+|
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~v 162 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNL-----GKNVKFFNVDFKDAEVPEGIFHAA 162 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTC-----CTTEEEECSCTTTSCCCTTCBSEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC-----CCcEEEEEcChhhcccCCCcccEE
Confidence 457789999999999999999877 55799999999999999998765432 256889999998755355689999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++. .+ +...+++++.++|+|||.+++...
T Consensus 163 ~~~-----~~--~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 163 FVD-----VR--EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp EEC-----SS--CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred EEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 984 33 334789999999999999999765
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=112.89 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=75.2
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++.. +++++++|+.+++ ++||+|+
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~~d~~~~~---~~~D~v~ 115 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTWI 115 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------CCEEEECcHHHCC---CCeeEEE
Confidence 4667999999999999998887755579999999999999999864 4789999998864 6899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++..++++.......+++++.+.+ |+ +++.
T Consensus 116 ~~~p~~~~~~~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 116 MNPPFGSVVKHSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp ECCCC-------CHHHHHHHHHHE--EE-EEEE
T ss_pred ECCCchhccCchhHHHHHHHHHhc--Cc-EEEE
Confidence 999999987544457899999998 55 4443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=122.51 Aligned_cols=110 Identities=19% Similarity=0.097 Sum_probs=88.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..++... . .+++|+|+|+.|++.|++++...++ . ++++.+.|+.+++.+..+||
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~-----~-~i~~~~~D~~~~~~~~~~~D 274 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL-----S-WIRFLRADARHLPRFFPEVD 274 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC-----T-TCEEEECCGGGGGGTCCCCS
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC-----C-ceEEEeCChhhCccccCCCC
Confidence 4567899999999999999988765 2 3699999999999999999877554 2 68999999999876667899
Q ss_pred EEEecchhccCCh--h----hHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTD--D----DFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~--~----~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|+++..+..... . ....+++++.++|||||.+++...
T Consensus 275 ~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 275 RILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp EEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred EEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9999766543211 1 136799999999999999999743
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.4e-14 Score=121.81 Aligned_cols=105 Identities=18% Similarity=0.108 Sum_probs=87.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...++ .++.++++|+.+++ ..++||+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l------~~~~~~~~d~~~~~-~~~~~D~ 189 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL------NNVIPILADNRDVE-LKDVADR 189 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC------SSEEEEESCGGGCC-CTTCEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEECChHHcC-ccCCceE
Confidence 34678999999999999999887743 3799999999999999999876543 35789999998873 3568999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
|++.... ....++.++.+.|+|||.++++++..
T Consensus 190 Vi~d~p~------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 190 VIMGYVH------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp EEECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECCcc------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 9988664 33478999999999999999987754
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-14 Score=121.89 Aligned_cols=107 Identities=15% Similarity=0.024 Sum_probs=76.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEE--EcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++. .+|+|+|+|+ |+..+++.. ........++.++ ++|+.+++ +++||
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~----~~~~~~~~~v~~~~~~~D~~~l~--~~~fD 142 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVP----RITESYGWNIVKFKSRVDIHTLP--VERTD 142 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCC----CCCCBTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhh----hhhhccCCCeEEEecccCHhHCC--CCCCc
Confidence 457789999999999999987755 5699999998 643322111 0000112268888 89998876 57899
Q ss_pred EEEecchhccCChhh---H--HHHHHHHHhcCCCCc--EEEEEecc
Q 023288 233 VIWVQWCIGHLTDDD---F--VSFFKRAKVGLKPGG--FFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~---~--~~~l~~~~r~LkpGG--~lii~e~~ 271 (284)
+|+|..+ ++.+... . ..++..+.++||||| .|++....
T Consensus 143 ~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 143 VIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9999877 4443211 1 137899999999999 99997654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.2e-14 Score=118.99 Aligned_cols=97 Identities=11% Similarity=0.046 Sum_probs=77.5
Q ss_pred CCceEEEeeccccHHHHHHHHh----C-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC---CC-C
Q 023288 157 QHLVALDCGSGIGRITKNLLIR----Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TP-E 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~----~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~-~ 227 (284)
++.+|||||||+|..+..+++. + ..+|+++|+|+.|++.|+.. ..+++++++|+.+. +. .
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~-----------~~~v~~~~gD~~~~~~l~~~~ 149 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD-----------MENITLHQGDCSDLTTFEHLR 149 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG-----------CTTEEEEECCSSCSGGGGGGS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc-----------CCceEEEECcchhHHHHHhhc
Confidence 4579999999999999988875 2 23799999999999888721 24689999999884 43 3
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHh-cCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r-~LkpGG~lii~e 269 (284)
..+||+|++... |. +...++.++.+ +|||||+|++.+
T Consensus 150 ~~~fD~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 150 EMAHPLIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SSCSSEEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred cCCCCEEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEe
Confidence 347999998665 32 56689999997 999999999965
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=117.23 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=80.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCce---eE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY---DV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f---D~ 233 (284)
++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...++ ..+++++++|+.+.. + ++| |+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l-----~~~v~~~~~D~~~~~-~-~~f~~~D~ 195 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGEFLEPF-K-EKFASIEM 195 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESSTTGGG-G-GGTTTCCE
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcchhhc-c-cccCCCCE
Confidence 4569999999999999999877223799999999999999999876543 235899999998732 2 478 99
Q ss_pred EEecchhc-----------cCCh------hhHHHHHHHHH-hcCCCCcEEEEE
Q 023288 234 IWVQWCIG-----------HLTD------DDFVSFFKRAK-VGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~-----------~~~~------~~~~~~l~~~~-r~LkpGG~lii~ 268 (284)
|+++.... |-+. .+...+++++. +.|+|||++++.
T Consensus 196 IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 196 ILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp EEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred EEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 99973221 2221 11227899999 999999999983
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=112.63 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=76.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~---~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
.++.+|||+|||+|.++..+++... .+|+|+|+|+.. . ..++++.++|+.+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~--------~~~v~~~~~d~~~~~~~~~~~~ 83 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P--------IPNVYFIQGEIGKDNMNNIKNI 83 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C--------CTTCEEEECCTTTTSSCCC---
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C--------CCCceEEEccccchhhhhhccc
Confidence 4678999999999999999987754 479999999821 1 245788999998865
Q ss_pred ------------------CCCCceeEEEecchhccCCh--hh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 ------------------PETGRYDVIWVQWCIGHLTD--DD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 ------------------~~~~~fD~Iv~~~~l~~~~~--~~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+++++||+|++..++++... .+ ...+++++.++|||||.|++...
T Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 45579999999888776421 11 12488999999999999998543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=116.12 Aligned_cols=107 Identities=20% Similarity=0.191 Sum_probs=83.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|..+..++... . .+|+++|+|+.+++.+++++...+.... ...++++.+.|+.......++||
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL-SSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-HTSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc-CCCcEEEEECCcccCcccCCCcC
Confidence 4567899999999999999888764 3 3799999999999999988754221000 01368899999876555557899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++...++++. +++.++|||||.+++...
T Consensus 154 ~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 154 AIHVGAAAPVVP--------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence 999998887655 468899999999999754
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-14 Score=118.53 Aligned_cols=112 Identities=20% Similarity=0.215 Sum_probs=85.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CC----
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE---- 227 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~---- 227 (284)
.++.+|||+|||+|..+..++.... .+|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ..
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~~~~~~~~~~ 142 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALETLDELLAAGE 142 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTC
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CCeEEEEEcCHHHHHHHHHhcCC
Confidence 3567999999999999998886532 3799999999999999999865443 356899999875531 11
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCccc
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~ 278 (284)
.++||+|++... ..+...+++++.++|+|||.+++.+ +.-.+.+.
T Consensus 143 ~~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~-~~~~g~~~ 187 (229)
T 2avd_A 143 AGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLR-VLWRGKVL 187 (229)
T ss_dssp TTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEEC-CSGGGGGG
T ss_pred CCCccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEEC-CCcCCccc
Confidence 168999998654 2356689999999999999988854 33334333
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=115.59 Aligned_cols=106 Identities=16% Similarity=0.011 Sum_probs=87.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||||||+|.++..++..+.. +|+++|+++.+++.|++++...++ ..++++.++|+.+...+..+||+|
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl-----~~~I~~~~gD~l~~~~~~~~~D~I 94 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL-----TSKIDVRLANGLSAFEEADNIDTI 94 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhccccccccCEE
Confidence 46789999999999999998877644 799999999999999999987665 356999999987765443479999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++.++.. +-+..++......|+++|+|+++-+
T Consensus 95 viaGmGg----~lI~~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 95 TICGMGG----RLIADILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp EEEEECH----HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred EEeCCch----HHHHHHHHHHHHHhCcCCEEEEECC
Confidence 8766543 2566889999999999999999754
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=118.55 Aligned_cols=104 Identities=17% Similarity=0.143 Sum_probs=84.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCC-C-CCCCCCCcceeEEEcCCCCCCCCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-N-HMAPDMHKATNFFCVPLQDFTPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~-~-~~~~~~~~~~~~~~~d~~~~~~~~~~ 230 (284)
..++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++... + + ..++++.++|+.+.++++++
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~-----~~~v~~~~~d~~~~~~~~~~ 171 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-----PDNWRLVVSDLADSELPDGS 171 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-----CTTEEEECSCGGGCCCCTTC
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-----CCcEEEEECchHhcCCCCCc
Confidence 4577899999999999999998752 337999999999999999987542 1 1 24688999999887776779
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
||+|++. ++ +...+++++.++|+|||.+++...
T Consensus 172 ~D~v~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 172 VDRAVLD-----ML--APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp EEEEEEE-----SS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred eeEEEEC-----Cc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 9999983 33 333799999999999999999764
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.2e-14 Score=124.86 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=84.9
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC----CCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~fD 232 (284)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++...++. ..+++++++|+.++... .++||
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~----~~~v~~i~~D~~~~l~~~~~~~~~fD 227 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDAMKFIQREERRGSTYD 227 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECcHHHHHHHHHhcCCCce
Confidence 567999999999999999987776 7999999999999999998654431 11488999998765321 46899
Q ss_pred EEEecchhccCC--------hhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 233 VIWVQWCIGHLT--------DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 233 ~Iv~~~~l~~~~--------~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+|++........ .++...+++++.++|+|||.|++...+.
T Consensus 228 ~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~ 275 (332)
T 2igt_A 228 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 275 (332)
T ss_dssp EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred EEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence 999954311110 2256789999999999999988865543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.7e-14 Score=118.11 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=81.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-------CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-------~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (284)
..++.+|||+|||+|.++..+++... .+|+++|+++.+++.|++++...+.... ...++++.++|+.+....
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML-DSGQLLIVEGDGRKGYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH-HHTSEEEEESCGGGCCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcccc-CCCceEEEECCcccCCCc
Confidence 45678999999999999998887433 3799999999999999988653210000 013588999998762222
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.++||+|++..+++++. +++.+.|||||++++.-.
T Consensus 161 ~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 161 NAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp GCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 36899999999998876 568899999999999754
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-14 Score=124.43 Aligned_cols=108 Identities=13% Similarity=-0.033 Sum_probs=75.1
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC---CCC---CC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPE---TG 229 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~---~~ 229 (284)
++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|++++...++ ..+++++++|+.+. +++ ++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEESEI 139 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC-----CccEEEEEcchhhhhhhhhhcccCC
Confidence 56799999999999999888764 24799999999999999999876543 23589999997662 233 25
Q ss_pred ceeEEEecchhccCCh-------------hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTD-------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~-------------~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+||+|+++..+++... +....++.++.++|||||.+.+.+
T Consensus 140 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~ 192 (254)
T 2h00_A 140 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK 192 (254)
T ss_dssp CBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred cccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence 8999999976654430 112245677778888887766543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=118.83 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=85.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|++++...++ ..++++...|+.+. +++++||
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~D 183 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDISEG-FDEKDVD 183 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGGGC-CSCCSEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHHHc-ccCCccC
Confidence 457789999999999999999887 3 24899999999999999998765432 25688999998876 4556899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|++. .+ +...+++++.++|+|||.+++.+..
T Consensus 184 ~V~~~-----~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 184 ALFLD-----VP--DPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp EEEEC-----CS--CGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred EEEEC-----Cc--CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99984 33 3347999999999999999998653
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-13 Score=114.08 Aligned_cols=105 Identities=16% Similarity=0.051 Sum_probs=84.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~ 233 (284)
.++.+|||||||+|.++..++..+.. +|+++|+++.+++.|++++...++ ..++++.++|..+ ++. ..+||+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~i~~~~~d~l~~l~~-~~~~D~ 87 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL-----KEKIQVRLANGLAAFEE-TDQVSV 87 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCG-GGCCCE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECchhhhccc-CcCCCE
Confidence 46789999999999999998876644 799999999999999999987665 3468999999854 332 126999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+..++- .+-+..++..+...|+|+|+|++.-+
T Consensus 88 IviaG~G----g~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 88 ITIAGMG----GRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp EEEEEEC----HHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred EEEcCCC----hHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 9976652 22467899999999999999999644
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-13 Score=115.55 Aligned_cols=106 Identities=11% Similarity=-0.018 Sum_probs=86.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||||||+|.++..++..+.. +|+++|+++.+++.|++++...++ ..++++.++|+.+...+..+||+|
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~I~v~~gD~l~~~~~~~~~D~I 94 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL-----TEQIDVRKGNGLAVIEKKDAIDTI 94 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEecchhhccCccccccEE
Confidence 46789999999999999988877644 799999999999999999887665 346899999987755443369999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++.++.. +-+..++....+.|+++|+|++.-+
T Consensus 95 viagmGg----~lI~~IL~~~~~~L~~~~~lIlq~~ 126 (244)
T 3gnl_A 95 VIAGMGG----TLIRTILEEGAAKLAGVTKLILQPN 126 (244)
T ss_dssp EEEEECH----HHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred EEeCCch----HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 9765532 3566899999999999999999754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.8e-14 Score=121.85 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCC--CCC---CCCCCcceeEEEcCCCCCCCCCCce
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE--NHM---APDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~--~~~---~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
++.+|||||||+|..+..+++....+|+++|+++.+++.|++++ .. ++. ......+++++.+|+.++...+++|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 56799999999999999988663448999999999999999998 32 110 0001356899999875531114689
Q ss_pred eEEEecchhccCChhhH--HHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~--~~~l~~~~r~LkpGG~lii~ 268 (284)
|+|++....+..+...+ ..+++++.++|+|||.+++.
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 99998665332221222 57999999999999999986
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-13 Score=120.86 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=84.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|..+..++.... .+|+++|+|+.+++.+++++...++ .++++++.|+.+++..+++||
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------~~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CeEEEEECChhhcccccccCC
Confidence 56778999999999999999987643 3799999999999999999865443 368899999888764456899
Q ss_pred EEEecc------hhccCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQW------CIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~------~l~~~~~-------~~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++.. ++++.++ .+ ...+++++.++|||||.++++..
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 999742 3333221 11 25899999999999999999643
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-13 Score=121.89 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=82.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCC--CCCCCCCCcceeEEEcCCCCC--CCCCCc
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF--TPETGR 230 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~--~~~~~~~~~~~~~~~~d~~~~--~~~~~~ 230 (284)
.++.+|||||||+|..+..+++.. ..+|+++|+|+.|++.|++++... ++ ...+++++++|+.++ ..++++
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl----~~~rv~~~~~D~~~~l~~~~~~~ 194 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY----EDPRVNLVIGDGVAFLKNAAEGS 194 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GSTTEEEEESCHHHHHHTSCTTC
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc----CCCcEEEEECCHHHHHHhccCCC
Confidence 456899999999999999888653 248999999999999999987421 11 024689999997664 223578
Q ss_pred eeEEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 231 YDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
||+|++.......+.+. ...+++++.++|+|||+|++.
T Consensus 195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99999865422111112 368999999999999999996
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=119.47 Aligned_cols=107 Identities=11% Similarity=0.006 Sum_probs=76.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEE--EcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF--CVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++. .+|+|+|+|+ |+..++++... ......++.++ ++|+.+++ +++||
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~----~~~~~~~v~~~~~~~D~~~l~--~~~fD 150 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRL----VETFGWNLITFKSKVDVTKME--PFQAD 150 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCC----CCCTTGGGEEEECSCCGGGCC--CCCCS
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhh----hhhcCCCeEEEeccCcHhhCC--CCCcC
Confidence 457789999999999999988765 5699999998 64433222100 00112268888 88998865 57899
Q ss_pred EEEecchhccCChhh---H--HHHHHHHHhcCCCCc--EEEEEecc
Q 023288 233 VIWVQWCIGHLTDDD---F--VSFFKRAKVGLKPGG--FFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~---~--~~~l~~~~r~LkpGG--~lii~e~~ 271 (284)
+|+|..+ ++.+... . ..+++.+.++||||| .|++....
T Consensus 151 ~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 151 TVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred EEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 9999877 4433211 1 137899999999999 99986554
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.4e-13 Score=118.39 Aligned_cols=109 Identities=16% Similarity=0.074 Sum_probs=79.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHcCCCC----CCCC-CCCcceeEEEcCCCCC--C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPEN----HMAP-DMHKATNFFCVPLQDF--T 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~-~~v~gvD~S~~~l~~ar~~~~~~~----~~~~-~~~~~~~~~~~d~~~~--~ 225 (284)
..++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.|++++...+ +... ....++++..+|+.+. +
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~ 182 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 182 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence 457789999999999999998876 44 479999999999999999875311 0000 0024689999999886 3
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+++++||+|++... ....++.++.++|||||.+++...
T Consensus 183 ~~~~~fD~V~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 183 IKSLTFDAVALDML-------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp -----EEEEEECSS-------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred cCCCCeeEEEECCC-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 45678999998543 112488999999999999998754
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-13 Score=118.28 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=82.0
Q ss_pred CCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCC--CCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~--~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (284)
.+.+|||||||+|..+..+++. ...+|+++|+++.+++.|++++... ++ ...+++++.+|+.++ +..+++||
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~----~~~rv~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL----DDPRVDVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT----TSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc----CCCceEEEECcHHHHHhhCCCCee
Confidence 5679999999999999988865 2358999999999999999987321 11 035789999998663 22346899
Q ss_pred EEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++....+..+... ...+++++.++|+|||.+++.
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 999965543322111 247999999999999999986
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=107.92 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=82.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.+++++...+ .+++++++|+.+++ ++||+|
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~---~~~D~v 116 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK-------GKFKVFIGDVSEFN---SRVDIV 116 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT-------TSEEEEESCGGGCC---CCCSEE
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC-------CCEEEEECchHHcC---CCCCEE
Confidence 34678999999999999999887766679999999999999999986532 16889999998864 489999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+++..+++........+++++.+++ ||.+++
T Consensus 117 ~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 117 IMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp EECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred EEcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 9999888776445567899999998 554444
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-13 Score=118.61 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=84.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
.++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++...+.. ....+++++.+|+.++. ..+++||+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccc--cCCCcEEEEECChHHHHHhCCCCceE
Confidence 356899999999999999888553 348999999999999999998643110 01357899999986642 22468999
Q ss_pred EEecchhccCChhhH--HHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~--~~~l~~~~r~LkpGG~lii~ 268 (284)
|++....++.+...+ ..+++++.++|+|||.+++.
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 998654433333333 68999999999999999986
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-13 Score=120.74 Aligned_cols=110 Identities=15% Similarity=0.254 Sum_probs=83.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCC--CC-CCCCCCCcceeEEEcCCCCC-CCCCCc
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP--EN-HMAPDMHKATNFFCVPLQDF-TPETGR 230 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~--~~-~~~~~~~~~~~~~~~d~~~~-~~~~~~ 230 (284)
.++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++.. .+ + ...+++++.+|+.++ +..+++
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~----~~~~v~~~~~D~~~~l~~~~~~ 151 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF----DDPRAVLVIDDARAYLERTEER 151 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG----GCTTEEEEESCHHHHHHHCCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccc----cCCceEEEEchHHHHHHhcCCC
Confidence 356799999999999999888653 34899999999999999998642 11 0 025689999998764 223578
Q ss_pred eeEEEecchhcc---CChhh--HHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGH---LTDDD--FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~---~~~~~--~~~~l~~~~r~LkpGG~lii~e 269 (284)
||+|++....+. -+... ...+++++.++|||||.+++.-
T Consensus 152 fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 152 YDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 999999766544 21112 3689999999999999999863
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=121.61 Aligned_cols=111 Identities=20% Similarity=0.245 Sum_probs=79.2
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~I 234 (284)
.+.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++..... .....+++++.+|+.++ +..+++||+|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~--~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcc--ccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 55799999999999999888653 24899999999999999999865210 00035689999988663 2234689999
Q ss_pred EecchhccCChhhH--HHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~--~~~l~~~~r~LkpGG~lii~e 269 (284)
++...-+.-+...+ ..+++++.++|+|||++++..
T Consensus 186 i~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 186 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 98654322222222 689999999999999999863
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-13 Score=121.15 Aligned_cols=111 Identities=22% Similarity=0.269 Sum_probs=82.1
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~I 234 (284)
++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++.... +.....+++++++|+.++ +..+++||+|
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~--~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS--CGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS--GGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc--cccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 56799999999999999888553 3489999999999999999986521 000025689999997653 2224689999
Q ss_pred EecchhccCChhhH--HHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~--~~~l~~~~r~LkpGG~lii~e 269 (284)
++...-..-+...+ ..+++++.++|+|||.+++.-
T Consensus 194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 98653221111222 689999999999999999853
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.9e-13 Score=119.66 Aligned_cols=103 Identities=10% Similarity=0.043 Sum_probs=83.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCC-CCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTP-ETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~fD~ 233 (284)
++.+|||+| |+|.++..++..+. .+|+++|+|+.|++.|++++...++ .+++++++|+.+ ++. .+++||+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~------~~v~~~~~D~~~~l~~~~~~~fD~ 244 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY------EDIEIFTFDLRKPLPDYALHKFDT 244 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC------CCEEEECCCTTSCCCTTTSSCBSE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEEChhhhhchhhccCCccE
Confidence 568999999 99999999887766 4899999999999999999875443 268999999988 553 3468999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+++..++.. ....+++++.++|||||.+++.+
T Consensus 245 Vi~~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 245 FITDPPETLE---AIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp EEECCCSSHH---HHHHHHHHHHHTBCSTTCEEEEE
T ss_pred EEECCCCchH---HHHHHHHHHHHHcccCCeEEEEE
Confidence 9998765543 24789999999999999543333
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-13 Score=120.70 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=80.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCC--CCCCCCCCCcceeEEEcCCCCC-CCCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP--ENHMAPDMHKATNFFCVPLQDF-TPETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~--~~~~~~~~~~~~~~~~~d~~~~-~~~~~~f 231 (284)
..+.+|||||||+|..+..+++... .+|+++|+++.+++.|++++.. .++ ...+++++.+|+.++ +..+++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~----~~~rv~v~~~Da~~~l~~~~~~f 169 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY----SSSKLTLHVGDGFEFMKQNQDAF 169 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHHHHHTCSSCE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc----CCCcEEEEECcHHHHHhhCCCCc
Confidence 3568999999999999998886532 4899999999999999998643 111 025689999997653 2335789
Q ss_pred eEEEecchhccCChh--hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~--~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|++....+..+.. ....+++++.++|+|||.|++..
T Consensus 170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 999986554322211 12478999999999999999864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=113.82 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=78.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++..+. +|+++|+|+.|++.+++++...+. ..+++++++|+.+++++ +||+|
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~D~~~~~~~--~fD~v 97 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPV-----ASKLQVLVGDVLKTDLP--FFDTC 97 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEESCTTTSCCC--CCSEE
T ss_pred CCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcceecccch--hhcEE
Confidence 45678999999999999999997765 699999999999999999865432 25789999999887654 79999
Q ss_pred EecchhccCChhhHHHHH--------------HHH--HhcCCCCcEEE
Q 023288 235 WVQWCIGHLTDDDFVSFF--------------KRA--KVGLKPGGFFV 266 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l--------------~~~--~r~LkpGG~li 266 (284)
+++..++..+ +.+..++ +++ +++|+|||.++
T Consensus 98 v~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 98 VANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp EEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred EEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 9976554432 1222222 233 36899999764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-13 Score=117.19 Aligned_cols=110 Identities=13% Similarity=0.018 Sum_probs=84.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC----CC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~ 228 (284)
..++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.+++++...++ .++++.+.|+.+++. ..
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~ 154 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------LNTIIINADMRKYKDYLLKNE 154 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCHHHHHHHHHHTT
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------CcEEEEeCChHhcchhhhhcc
Confidence 4577899999999999999888743 24799999999999999999876543 368899999877643 24
Q ss_pred CceeEEEecchhccC---C------h-------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 229 GRYDVIWVQWCIGHL---T------D-------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~---~------~-------~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++||+|++......+ . . .....+++++.++|||||.++++..
T Consensus 155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 689999986322111 0 0 2346899999999999999999753
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-13 Score=122.77 Aligned_cols=110 Identities=13% Similarity=0.056 Sum_probs=87.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC----CCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD 232 (284)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++ ..+++++++|+.++.. +.++||
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEMEKLQKKGEKFD 291 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CccceEEECCHHHHHHHHHhhCCCCC
Confidence 6789999999999999998877666899999999999999999876543 2378999999876532 246899
Q ss_pred EEEecchhccCCh-------hhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~~l~~~~~-------~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|++.......+. .....++.++.++|+|||.++++.+.
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 9998654322211 35678999999999999999988653
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=109.97 Aligned_cols=103 Identities=12% Similarity=-0.060 Sum_probs=86.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..+. ....|+++|+++.|++.+++++... +.+..+..+|+...+++ ++||+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~-------g~~~~~~v~D~~~~~~~-~~~DvvL 173 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREK-------DWDFTFALQDVLCAPPA-EAGDLAL 173 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHT-------TCEEEEEECCTTTSCCC-CBCSEEE
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhc-------CCCceEEEeecccCCCC-CCcchHH
Confidence 467899999999999999776 3447999999999999999997553 35678899999877765 5999999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.-++||+.+++....+ ++...|+++|.++-.+
T Consensus 174 llk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 174 IFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp EESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 99999999766655555 8888999999888777
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-13 Score=124.43 Aligned_cols=110 Identities=9% Similarity=0.067 Sum_probs=85.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCc-ceeEEEcCCCCCCC----CCCce
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFTP----ETGRY 231 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~----~~~~f 231 (284)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++ .. +++++++|+.++.. ...+|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~-----~~~~v~~~~~D~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL-----DMANHQLVVMDVFDYFKYARRHHLTY 286 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC-----CCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECCHHHHHHHHHHhCCCc
Confidence 5679999999999999998876766899999999999999999876554 22 68999999876321 23589
Q ss_pred eEEEecchh-----ccCC--hhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCI-----GHLT--DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l-----~~~~--~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|++.... .+.. ...+..+++.+.++|+|||.++++.+.
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999986443 1222 123556888899999999999998653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-13 Score=114.87 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=79.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
.+.+|||||||+|..+..+++.. .+|+++|+++.|++.|++++.... ......+++++.+|..++. ++||+|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~--~~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFH--EVKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHH--HHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhc--cccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 55799999999999999888764 789999999999999998764310 0000246889999987765 68999998
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.. +++. .+++++.++|+|||.+++..
T Consensus 146 d~-----~dp~--~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 146 LQ-----EPDI--HRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp SS-----CCCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred CC-----CChH--HHHHHHHHhcCCCcEEEEEc
Confidence 63 2223 59999999999999999863
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-13 Score=116.64 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=87.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+..+|+++|+||.+++.+++++..+++ ..+++++++|..++... +.||.|+
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v-----~~~v~~~~~D~~~~~~~-~~~D~Vi 197 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPGE-NIADRIL 197 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCcHHHhccc-cCCCEEE
Confidence 47889999999999999999888777899999999999999999987765 45689999999887654 6899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
++... .-..++..+.++|||||++.+.+++.
T Consensus 198 ~~~p~------~~~~~l~~a~~~lk~gG~ih~~~~~~ 228 (278)
T 3k6r_A 198 MGYVV------RTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ECCCC------cHHHHHHHHHHHcCCCCEEEEEeeec
Confidence 87542 12257788889999999998876643
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-13 Score=118.51 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=78.7
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCC--CCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP--ENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~--~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (284)
.+.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++.. .++ ...+++++.+|+.++ +..+++||
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~----~~~~v~~~~~D~~~~l~~~~~~fD 165 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF----DDPRAEIVIANGAEYVRKFKNEFD 165 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc----CCCceEEEECcHHHHHhhCCCCce
Confidence 45799999999999999888653 34899999999999999998742 111 025689999997653 22346899
Q ss_pred EEEecchhccCCh-h--hHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTD-D--DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~-~--~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++...-+++.. . ....+++++.++|+|||.+++.
T Consensus 166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9998543221211 1 1258999999999999999996
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.4e-13 Score=113.11 Aligned_cols=121 Identities=11% Similarity=-0.020 Sum_probs=94.8
Q ss_pred ccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc
Q 023288 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (284)
Q Consensus 135 ~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~ 213 (284)
+.....+....+.. ...+.+|||||||+|.++..++...+. +|+++|+++.|++.+++++...| ..
T Consensus 116 Lp~lD~fY~~i~~~------i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-------~~ 182 (281)
T 3lcv_B 116 LPHLDEFYRELFRH------LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN-------VP 182 (281)
T ss_dssp GGGHHHHHHHHGGG------SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-------CC
T ss_pred hHhHHHHHHHHHhc------cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-------CC
Confidence 44444555444432 234779999999999999988755344 89999999999999999987654 34
Q ss_pred eeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 214 ~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.++...|+..-++ .++||+|++.-+++|+.++.....+ ++...|+|+|.++-.+.
T Consensus 183 ~~~~v~D~~~~~p-~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 183 HRTNVADLLEDRL-DEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp EEEEECCTTTSCC-CSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred ceEEEeeecccCC-CCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 7788888876554 4789999999999999877655666 89999999999888775
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.2e-12 Score=117.96 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=87.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 230 (284)
..++.+|||+|||+|..+..++.... .+|+++|+|+.+++.+++++...++ .++++.+.|+.+++ +++++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------KIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCTTCCSSSSCSSC
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEEEcChhhcchhhccCC
Confidence 56778999999999999999987643 3799999999999999999876543 36889999998876 44478
Q ss_pred eeEEEe------cchhccCChh-------hH-------HHHHHHHHhcCCCCcEEEEEec
Q 023288 231 YDVIWV------QWCIGHLTDD-------DF-------VSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 231 fD~Iv~------~~~l~~~~~~-------~~-------~~~l~~~~r~LkpGG~lii~e~ 270 (284)
||+|++ ..++++.++. ++ ..+++++.++|||||.+++++.
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 999996 3344544421 11 5789999999999999998764
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-12 Score=106.75 Aligned_cols=99 Identities=23% Similarity=0.281 Sum_probs=73.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC----------CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEE-EcCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF----------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQD 223 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~----------~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~-~~d~~~ 223 (284)
..++.+|||+|||+|.++..+++... .+|+++|+|+.+ . ..++++. .+|+.+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~--------~~~~~~~~~~d~~~ 82 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P--------LEGATFLCPADVTD 82 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C--------CTTCEEECSCCTTS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c--------CCCCeEEEeccCCC
Confidence 34678999999999999999988743 579999999831 0 1347788 888766
Q ss_pred CC--------CCCCceeEEEecchhccC----Chhh-----HHHHHHHHHhcCCCCcEEEEEec
Q 023288 224 FT--------PETGRYDVIWVQWCIGHL----TDDD-----FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 224 ~~--------~~~~~fD~Iv~~~~l~~~----~~~~-----~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.. +++++||+|++..+++.. .+.. ...+++++.++|||||.|++...
T Consensus 83 ~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 83 PRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 43 234589999987654432 2111 14789999999999999999865
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.9e-13 Score=129.38 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=87.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++. ..+++++++|+.++ +...++||+|+
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----~~~v~~i~~D~~~~l~~~~~~fD~Ii 614 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT----GRAHRLIQADCLAWLREANEQFDLIF 614 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----STTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHhcCCCccEEE
Confidence 56799999999999999988777768999999999999999998776541 14689999998764 23346899999
Q ss_pred ecchh-----------ccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCI-----------GHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l-----------~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+.... ... .+...++..+.++|+|||.|+++.+.
T Consensus 615 ~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 615 IDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp ECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 86532 221 35778999999999999999987654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-12 Score=119.58 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=86.5
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC----CCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD 232 (284)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++. ..+++++++|+.++.. ...+||
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~----~~~v~~~~~D~~~~~~~~~~~~~~fD 295 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECCHHHHHHHHHhcCCCCC
Confidence 56799999999999999998776668999999999999999998764420 1268999999876532 135899
Q ss_pred EEEecchhccCC-------hhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 233 VIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~~l~~~~-------~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|++.......+ ...+..++.++.+.|+|||.++++.+.
T Consensus 296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999875321110 035778999999999999999998654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.2e-13 Score=119.92 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=85.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC----CCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~fD 232 (284)
++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++...++ .+++++++|+.++.. ...+||
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~------~~~~~~~~d~~~~~~~~~~~~~~fD 281 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEGERFD 281 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CCceEEECCHHHHHHHHHhcCCCee
Confidence 5679999999999999998877 55799999999999999999876553 348899999876532 146899
Q ss_pred EEEecchhccCCh-------hhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~~l~~~~~-------~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+|++.......+. .....++.++.++|+|||.++++.+.
T Consensus 282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9998643222111 24668999999999999999998764
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-12 Score=105.16 Aligned_cols=98 Identities=14% Similarity=-0.019 Sum_probs=72.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------- 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------- 227 (284)
..++.+|||+|||+|.++..+++. ..+|+|+|+++.. . ..+++++++|+.+....
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~---------~--------~~~v~~~~~D~~~~~~~~~~~~~~ 84 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME---------E--------IAGVRFIRCDIFKETIFDDIDRAL 84 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC---------C--------CTTCEEEECCTTSSSHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc---------c--------CCCeEEEEccccCHHHHHHHHHHh
Confidence 356789999999999999988866 4479999999731 1 24688999999885421
Q ss_pred ----CCceeEEEecchhccCC---------hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 ----TGRYDVIWVQWCIGHLT---------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 ----~~~fD~Iv~~~~l~~~~---------~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.++||+|++........ .+....+++.+.++|||||.|++...
T Consensus 85 ~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 85 REEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 14899999865322111 01245788999999999999998643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.1e-12 Score=115.25 Aligned_cols=107 Identities=17% Similarity=0.115 Sum_probs=82.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|||+|||+|.++..++..+.. +|+|+|+|+.|++.|++++...++ ..++++.++|+.+++.++++||+|
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----~~~i~~~~~D~~~~~~~~~~fD~I 290 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV-----LDKIKFIQGDATQLSQYVDSVDFA 290 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC-----GGGCEEEECCGGGGGGTCSCEEEE
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhhCCcccCCcCEE
Confidence 46789999999999999988876652 799999999999999999876554 357899999999988777899999
Q ss_pred EecchhccCC-----hhh-HHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLT-----DDD-FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~-----~~~-~~~~l~~~~r~LkpGG~lii~ 268 (284)
+++..++.-. ..+ ...+++++.++| +|+.++++
T Consensus 291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~ 329 (373)
T 3tm4_A 291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT 329 (373)
T ss_dssp EEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE
T ss_pred EECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 9986654321 112 367889999988 44444443
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-12 Score=114.54 Aligned_cols=102 Identities=9% Similarity=0.046 Sum_probs=83.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++.. +. +..+|+++|+|+.+++.|++++...++ ..+++++++|+.++. ++||+|+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l-----~~~v~~~~~D~~~~~---~~fD~Vi 263 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKL-----EHKIIPILSDVREVD---VKGNRVI 263 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGGCC---CCEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECChHHhc---CCCcEEE
Confidence 3678999999999999998 75 566899999999999999999876554 246899999998876 6899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+..... ...++..+.++|+|||.+++.+....
T Consensus 264 ~dpP~~------~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 264 MNLPKF------AHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp ECCTTT------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred ECCcHh------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 864321 12788999999999999999876443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=114.69 Aligned_cols=104 Identities=10% Similarity=-0.015 Sum_probs=72.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeC----CHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~----S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~ 229 (284)
..++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++..+ ....+ ..++.+.++ |+..++ ..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~------~~~v~~~~~~D~~~l~--~~ 147 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG------WNLVRLQSGVDVFFIP--PE 147 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT------GGGEEEECSCCTTTSC--CC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC------CCCeEEEeccccccCC--cC
Confidence 456789999999999999988765 46999999 665542110 11100 246889888 887765 45
Q ss_pred ceeEEEecchhc---cCChhh-HHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCIG---HLTDDD-FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l~---~~~~~~-~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+||+|+|..+++ +..+.. ...++..+.++|||||.|++...
T Consensus 148 ~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 148 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 899999977653 212111 12578999999999999988543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-12 Score=116.54 Aligned_cols=107 Identities=11% Similarity=-0.043 Sum_probs=81.1
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++..++..+.. |+++|+|+.+++.|++++...++ ..++.++|+.++. ...+.||+|+
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~-------~~~~~~~D~~~~l~~~~~~fD~Ii 285 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGL-------RVDIRHGEALPTLRGLEGPFHHVL 285 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTC-------CCEEEESCHHHHHHTCCCCEEEEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCC-------CCcEEEccHHHHHHHhcCCCCEEE
Confidence 5789999999999999999877666 99999999999999999876543 1346688876642 1124599999
Q ss_pred ecchhccCCh-------hhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~-------~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+......-+. .+...++..+.++|+|||.|++..+.
T Consensus 286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 8754311111 24568899999999999999977653
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-12 Score=112.69 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=84.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC------CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG 229 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~------~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 229 (284)
.++.+|||+|||+|.++..++.... .+++|+|+++.+++.|+.++...+ .++.+.++|..... ..+
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-------~~~~i~~~D~l~~~-~~~ 200 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-------QKMTLLHQDGLANL-LVD 200 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-------CCCEEEESCTTSCC-CCC
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-------CCceEEECCCCCcc-ccC
Confidence 4568999999999999998876542 469999999999999999865432 24678889876533 346
Q ss_pred ceeEEEecchhccCChhhH----------------HHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDF----------------VSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~----------------~~~l~~~~r~LkpGG~lii~e 269 (284)
+||+|+++..+++++.++. ..++.++.+.|+|||++++.-
T Consensus 201 ~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 201 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999988877653332 258999999999999998875
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=114.66 Aligned_cols=109 Identities=17% Similarity=0.045 Sum_probs=86.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
..++.+|||+|||+|..+..++..+. .+|+++|+|+.+++.+++++...+. ++.+.+.|+.+++ +++++|
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-------~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-------KATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-------CCEEEECCTTCTHHHHTTCCE
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-------CeEEEeCchhhchhhcccCCC
Confidence 56778999999999999999998765 3799999999999999999876432 3678899998875 445789
Q ss_pred eEEEec------chhccCChh-------h-------HHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQ------WCIGHLTDD-------D-------FVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~------~~l~~~~~~-------~-------~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+|++. .++++.++. + ...+++++.++|||||.++++..
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999952 344444421 1 14789999999999999999763
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=115.43 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=83.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~ 233 (284)
++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ .++.+.+.|+.+++. .+++||+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------~nv~~~~~D~~~~~~~~~~~fD~ 190 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------SNVALTHFDGRVFGAAVPEMFDA 190 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCCSTTHHHHSTTCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHhhhhccccCCE
Confidence 778999999999999999987643 3799999999999999999875443 368899999988653 3468999
Q ss_pred EEec------chhccCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~------~~l~~~~~-------~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
|++. .++.+.++ ++ ...+++++.++|||||+|+++.
T Consensus 191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT 246 (479)
T 2frx_A 191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST 246 (479)
T ss_dssp EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9972 23333221 11 2478999999999999999874
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.2e-12 Score=116.23 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=83.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...|+ . +.+.++|+.+++ ..+++|
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------~-v~~~~~Da~~l~~~~~~~F 171 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------P-LAVTQAPPRALAEAFGTYF 171 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------C-CEEECSCHHHHHHHHCSCE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------e-EEEEECCHHHhhhhccccC
Confidence 55788999999999999999987644 3799999999999999999876543 2 778888877654 234789
Q ss_pred eEEEec------chhccCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~------~~l~~~~~-------~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|++. .++..-++ ++ ...+++++.++|||||+|+++.
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999952 22332221 11 2679999999999999999864
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-11 Score=110.22 Aligned_cols=100 Identities=21% Similarity=0.201 Sum_probs=77.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++...++ . ++|+++|+.++... +||+|+
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl------~-v~~~~~d~~~~~~~--~fD~Vv 358 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNV------D-AEFEVASDREVSVK--GFDTVI 358 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC------C-EEEEECCTTTCCCT--TCSEEE
T ss_pred CCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECChHHcCcc--CCCEEE
Confidence 35679999999999999988865 45799999999999999998865432 2 88999999887533 899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+......+. . .+++.+. .|+|||.++++-+
T Consensus 359 ~dPPr~g~~--~--~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 359 VDPPRAGLH--P--RLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp ECCCTTCSC--H--HHHHHHH-HHCCSEEEEEESC
T ss_pred EcCCccchH--H--HHHHHHH-hcCCCcEEEEECC
Confidence 976543333 1 3555554 4899999999843
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-11 Score=105.84 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=72.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.+++++...+ ..+++++++|+.+++++ +||+|
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~------~~~v~~~~~D~~~~~~~--~~D~V 110 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEG------YNNLEVYEGDAIKTVFP--KFDVC 110 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTT------CCCEEC----CCSSCCC--CCSEE
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcC------CCceEEEECchhhCCcc--cCCEE
Confidence 4567899999999999999888654 479999999999999999875322 14688999999887653 79999
Q ss_pred EecchhccCChhhHHHHH---------------HHHHhcCCCCc
Q 023288 235 WVQWCIGHLTDDDFVSFF---------------KRAKVGLKPGG 263 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l---------------~~~~r~LkpGG 263 (284)
+++...+. ..+.+..++ ..+.|+++|+|
T Consensus 111 v~n~py~~-~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 111 TANIPYKI-SSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp EEECCGGG-HHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred EEcCCccc-ccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 99766553 333344444 34678888877
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.2e-11 Score=109.12 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=79.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~ 230 (284)
..++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...++ .+++|+++|+.+. ++.+++
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~------~~v~f~~~d~~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHENLEEDVTKQPWAKNG 356 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCTTSCCSSSGGGTTC
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEECCHHHHhhhhhhhcCC
Confidence 346679999999999999988865 55799999999999999999865443 3789999999873 234568
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
||+|+++...... ..+++.+.+ ++|++.++++.+
T Consensus 357 fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvsc~ 390 (433)
T 1uwv_A 357 FDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVSCN 390 (433)
T ss_dssp CSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEESC
T ss_pred CCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEECC
Confidence 9999987554332 245555543 789999988754
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-12 Score=110.70 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=78.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC-CceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~fD~ 233 (284)
..++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.++++... ..+++++++|+.+++++. ++| .
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~f-~ 96 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQFQFPNKQRY-K 96 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTTTTCCCSSEE-E
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc--------CCceEEEECChhhcCcccCCCc-E
Confidence 4567899999999999999998776 5799999999999999887652 357899999999987663 689 6
Q ss_pred EEecchhccCChhhHH----------HHH----HHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGHLTDDDFV----------SFF----KRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~----------~~l----~~~~r~LkpGG~lii~e 269 (284)
|+++...+. +.+.+. .++ +.+.++|+|||.+++..
T Consensus 97 vv~n~Py~~-~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 97 IVGNIPYHL-STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEECCSSS-CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEeCCccc-cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 666533221 111111 334 66999999999887754
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=102.06 Aligned_cols=79 Identities=13% Similarity=0.042 Sum_probs=67.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.++..++... .+|+++|+++.|++.+++++.. ..+++++++|+.++++++.+||+|
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~--------~~~v~vi~gD~l~~~~~~~~fD~I 118 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKEL--------YNNIEIIWGDALKVDLNKLDFNKV 118 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHH--------CSSEEEEESCTTTSCGGGSCCSEE
T ss_pred CCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhcc--------CCCeEEEECchhhCCcccCCccEE
Confidence 4577899999999999999998774 4699999999999999998753 356899999999988777789999
Q ss_pred Eecchhcc
Q 023288 235 WVQWCIGH 242 (284)
Q Consensus 235 v~~~~l~~ 242 (284)
+++..++.
T Consensus 119 v~NlPy~i 126 (295)
T 3gru_A 119 VANLPYQI 126 (295)
T ss_dssp EEECCGGG
T ss_pred EEeCcccc
Confidence 98866543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-11 Score=112.98 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=82.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~f 231 (284)
..++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...++ .++.+.+.|..++. ..+++|
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~------~nv~v~~~Da~~l~~~~~~~F 176 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV------SNAIVTNHAPAELVPHFSGFF 176 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC------SSEEEECCCHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhhhccccC
Confidence 56788999999999999999887633 3799999999999999999876553 35788888887654 224689
Q ss_pred eEEEecc------hhccCCh-------h-------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQW------CIGHLTD-------D-------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~------~l~~~~~-------~-------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|++.. ++..-++ + ....++.++.++|||||.|+++.
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 234 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999742 2222111 0 12378999999999999999864
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6.2e-10 Score=94.99 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=60.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC-CceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~fD~ 233 (284)
..++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.+++++.. ..+++++++|+.++++++ ..| .
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~--------~~~v~~~~~D~~~~~~~~~~~~-~ 97 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSY-K 97 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCC-E
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc--------CCCeEEEEChHHhCCcccCCCe-E
Confidence 4567899999999999999999876 5699999999999999999864 246899999999887663 456 4
Q ss_pred EEecc
Q 023288 234 IWVQW 238 (284)
Q Consensus 234 Iv~~~ 238 (284)
|+++.
T Consensus 98 vv~nl 102 (244)
T 1qam_A 98 IFGNI 102 (244)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 55543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=107.70 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=83.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--------------CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--------------~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d 220 (284)
+.++.+|||.|||+|.++..+++.. ..+++|+|+++.+++.|+.++...+.. ..++++.++|
T Consensus 169 ~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~----~~~~~i~~gD 244 (445)
T 2okc_A 169 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----TDRSPIVCED 244 (445)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----SSCCSEEECC
T ss_pred CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC----cCCCCEeeCC
Confidence 4567799999999999998777542 236999999999999999886543321 0146788898
Q ss_pred CCCCCCCCCceeEEEecchhccCChhh---------------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 221 LQDFTPETGRYDVIWVQWCIGHLTDDD---------------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 221 ~~~~~~~~~~fD~Iv~~~~l~~~~~~~---------------~~~~l~~~~r~LkpGG~lii~e 269 (284)
....+.. .+||+|+++..+.+....+ ...+++.+.+.|||||+++++-
T Consensus 245 ~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 245 SLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp TTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 8776544 4899999998777643211 1378999999999999998874
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.6e-10 Score=100.95 Aligned_cols=109 Identities=13% Similarity=0.079 Sum_probs=85.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC---------------------------------------CcEEEEeCCHHHHHH
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA 195 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~---------------------------------------~~v~gvD~S~~~l~~ 195 (284)
..++..|||.+||+|.++...+.... .+++|+|+|+.|++.
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~ 271 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence 45678999999999999988775432 249999999999999
Q ss_pred HHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhcc-C-ChhhHHHHHHHHHhcCCC--CcEEEEEe
Q 023288 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH-L-TDDDFVSFFKRAKVGLKP--GGFFVLKE 269 (284)
Q Consensus 196 ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~-~-~~~~~~~~l~~~~r~Lkp--GG~lii~e 269 (284)
|++++...++ ...+++.+.|+.+++.+ .+||+|+++..+.. + ..+++..+++.+.+.||+ ||.+++.-
T Consensus 272 Ar~Na~~~gl-----~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 343 (384)
T 3ldg_A 272 ARKNAREVGL-----EDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT 343 (384)
T ss_dssp HHHHHHHTTC-----TTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHHcCC-----CCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 9999877655 34589999999988765 48999999966432 2 335677888888888877 88877763
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-10 Score=103.90 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=83.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC---------------------------------------CcEEEEeCCHHHHHH
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA 195 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~---------------------------------------~~v~gvD~S~~~l~~ 195 (284)
..++..|||.+||+|.++...+.... .+|+|+|+|+.|++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 45678999999999999988775432 249999999999999
Q ss_pred HHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhcc-CC-hhhHHHHHHHHHhcCCC--CcEEEEEe
Q 023288 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH-LT-DDDFVSFFKRAKVGLKP--GGFFVLKE 269 (284)
Q Consensus 196 ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~-~~-~~~~~~~l~~~~r~Lkp--GG~lii~e 269 (284)
|++++...++ ..++++.++|+.+++.+ .+||+|+++..+.. +. .+++..+.+.+.+.||+ ||.+++.-
T Consensus 279 Ar~Na~~~gl-----~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 279 AKQNAVEAGL-----GDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHHHHHTTC-----TTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred HHHHHHHcCC-----CCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999877654 34589999999988765 48999999965432 21 23566677777777665 88777753
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=106.35 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=74.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.++.+|||+|||+|.++..++++. ..+++|+|+++.+++.| .+++++++|+.++.. .++||+
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~~~~~~~~D~~~~~~-~~~fD~ 101 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLWEP-GEAFDL 101 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGCCC-SSCEEE
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------CCCcEEeCChhhcCc-cCCCCE
Confidence 345699999999999999888753 34799999999998765 237889999887654 368999
Q ss_pred EEecchhcc----------CChhh-----------------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IWVQWCIGH----------LTDDD-----------------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~----------~~~~~-----------------~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+++..+.. +..+. ...+++.+.++|+|||.+++.-
T Consensus 102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 164 (421)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999744322 22221 1267999999999999998874
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-10 Score=102.60 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=85.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC---------------------------------------CcEEEEeCCHHHHHH
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDA 195 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~---------------------------------------~~v~gvD~S~~~l~~ 195 (284)
..++.+|||++||+|.++..++.... .+|+|+|+++.|++.
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~ 272 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI 272 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence 45678999999999999998876432 259999999999999
Q ss_pred HHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhcc-CC-hhhHHHHHHHHHhcCCC--CcEEEEEe
Q 023288 196 ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH-LT-DDDFVSFFKRAKVGLKP--GGFFVLKE 269 (284)
Q Consensus 196 ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~-~~-~~~~~~~l~~~~r~Lkp--GG~lii~e 269 (284)
|++++...++ ..++++.+.|+.+++.+ .+||+|+++..+.. +. .+++..+++++.+.||+ ||.+++..
T Consensus 273 Ar~Na~~~gl-----~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 344 (385)
T 3ldu_A 273 ARENAEIAGV-----DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT 344 (385)
T ss_dssp HHHHHHHHTC-----GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred HHHHHHHcCC-----CCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 9999876554 34689999999988765 58999999877542 22 24567788888888876 88777753
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-10 Score=97.77 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=68.2
Q ss_pred CCCCceEEEeec------cccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE-EEcCCCCCC
Q 023288 155 NNQHLVALDCGS------GIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF-FCVPLQDFT 225 (284)
Q Consensus 155 ~~~~~~VLDiGc------GtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~-~~~d~~~~~ 225 (284)
..++.+|||+|| |+|. ..+++... .+|+|+|+|+. . .++++ +++|+.+++
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v-----------~~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V-----------SDADSTLIGDCATVH 119 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B-----------CSSSEEEESCGGGCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C-----------CCCEEEEECccccCC
Confidence 567889999999 5576 32444433 37999999987 1 13678 999998876
Q ss_pred CCCCceeEEEecchhcc--------CC-hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 PETGRYDVIWVQWCIGH--------LT-DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~--------~~-~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++ ++||+|+++...+. .. ...+..+++++.++|||||.|++...
T Consensus 120 ~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 120 TA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 55 68999999754221 11 11255899999999999999999654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.1e-10 Score=94.89 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=62.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC----CCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----TGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~ 230 (284)
..++.+|||||||+|.++..++..+ .+|+++|+++.|++.+++++.. ..+++++++|+.+++++ .++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~~~ 97 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--------QKNITIYQNDALQFDFSSVKTDKP 97 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--------CTTEEEEESCTTTCCGGGSCCSSC
T ss_pred CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--------CCCcEEEEcchHhCCHHHhccCCC
Confidence 4567899999999999999988765 5799999999999999999865 35689999999998753 246
Q ss_pred eeEEEecchh
Q 023288 231 YDVIWVQWCI 240 (284)
Q Consensus 231 fD~Iv~~~~l 240 (284)
|| |+++...
T Consensus 98 ~~-vv~NlPY 106 (255)
T 3tqs_A 98 LR-VVGNLPY 106 (255)
T ss_dssp EE-EEEECCH
T ss_pred eE-EEecCCc
Confidence 88 6666544
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=94.83 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=68.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC-CceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~fD~ 233 (284)
..++ +|||||||+|.++..++..+ .+|+++|+++.|++.+++++.. .+++++++|+.++++++ ..+|.
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~---------~~v~vi~~D~l~~~~~~~~~~~~ 113 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG---------LPVRLVFQDALLYPWEEVPQGSL 113 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT---------SSEEEEESCGGGSCGGGSCTTEE
T ss_pred CCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC---------CCEEEEECChhhCChhhccCccE
Confidence 4566 99999999999999999776 4699999999999999999763 46899999999887653 26899
Q ss_pred EEecchhccCChhhHHHHHHH
Q 023288 234 IWVQWCIGHLTDDDFVSFFKR 254 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~ 254 (284)
|+++...+ ++.+-+..++..
T Consensus 114 iv~NlPy~-iss~il~~ll~~ 133 (271)
T 3fut_A 114 LVANLPYH-IATPLVTRLLKT 133 (271)
T ss_dssp EEEEECSS-CCHHHHHHHHHH
T ss_pred EEecCccc-ccHHHHHHHhcC
Confidence 98887654 343334444443
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-09 Score=93.85 Aligned_cols=107 Identities=10% Similarity=-0.039 Sum_probs=77.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC---C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---G 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~ 229 (284)
+.++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++...++ .++++++.|+.++.... .
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 173 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPSDPRYH 173 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTTCGGGT
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCChHhcCccccccC
Confidence 5678899999999999999988753 23799999999999999999876553 46889999988765332 4
Q ss_pred ceeEEEec------chhccCCh---------hh-------HHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQ------WCIGHLTD---------DD-------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~------~~l~~~~~---------~~-------~~~~l~~~~r~LkpGG~lii~ 268 (284)
+||.|++. .++..-++ ++ ...++..+.++|+ ||.|+.+
T Consensus 174 ~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYs 233 (309)
T 2b9e_A 174 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYS 233 (309)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEE
T ss_pred CCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEE
Confidence 79999963 22222111 11 1346788888887 9988875
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-09 Score=97.74 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=72.2
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCC-------
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PET------- 228 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~------- 228 (284)
+.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|++++...++ .+++|+++|+.++. ...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~------~~v~~~~~d~~~~~~~~~~~~~~~~l 286 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI------DNVQIIRMAAEEFTQAMNGVREFNRL 286 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC------CSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred CCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEECCHHHHHHHHhhccccccc
Confidence 56899999999999997774 556799999999999999999876543 46899999987642 111
Q ss_pred -------CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 -------GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 -------~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+||+|++...-.. +..++.+.|+|+|.+++..
T Consensus 287 ~~~~~~~~~fD~Vv~dPPr~g--------~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 287 QGIDLKSYQCETIFVDPPRSG--------LDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GGSCGGGCCEEEEEECCCTTC--------CCHHHHHHHTTSSEEEEEE
T ss_pred cccccccCCCCEEEECcCccc--------cHHHHHHHHhCCCEEEEEE
Confidence 37999997644221 2344555667888777764
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.8e-10 Score=97.18 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=75.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCH-------HHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-C-C
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS-------HFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P 226 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~-------~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 226 (284)
.++.+|||+|||+|..+..++..+. +|+++|+|+ .+++.|+++....++ ..+++++++|+.++ + +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~-----~~ri~~~~~d~~~~l~~~ 155 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDT-----AARINLHFGNAAEQMPAL 155 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHH-----HTTEEEEESCHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCC-----ccCeEEEECCHHHHHHhh
Confidence 4567999999999999998887654 699999999 999999887643221 12489999998774 2 2
Q ss_pred CC--CceeEEEecchhccCCh------------------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ET--GRYDVIWVQWCIGHLTD------------------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~--~~fD~Iv~~~~l~~~~~------------------~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++ ++||+|++...+.+... .+...++..+.++.+. .+++...
T Consensus 156 ~~~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p 217 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRP 217 (258)
T ss_dssp HHHHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEE
T ss_pred hccCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcC
Confidence 33 58999999776655321 1345666777777643 5666554
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.6e-10 Score=100.97 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=80.3
Q ss_pred CCceEEEeeccccHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc-eeEEEcCCCCCCC--CCCce
Q 023288 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQDFTP--ETGRY 231 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~--~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~--~~~~f 231 (284)
++.+|||++||+|.++..++.+ +..+|+++|+++.+++.++++++..++ ..+ ++++++|+.++.. ..++|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl-----~~~~v~v~~~Da~~~l~~~~~~~f 126 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI-----PEDRYEIHGMEANFFLRKEWGFGF 126 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHHHHHSCCSSCE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCceEEEEeCCHHHHHHHhhCCCC
Confidence 5689999999999999998875 335799999999999999999987664 233 8899998755321 13579
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|++.. . . ....++..+.+.|+|||.++++-
T Consensus 127 D~V~lDP-~---g--~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 127 DYVDLDP-F---G--TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEEECC-S---S--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECC-C---c--CHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999876 1 1 12368889999999999888864
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.4e-10 Score=101.34 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=78.1
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCC---------------CCCCCCCCcceeEEEcC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE---------------NHMAPDMHKATNFFCVP 220 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~---------------~~~~~~~~~~~~~~~~d 220 (284)
++.+|||+|||+|..+..++... ..+|+++|+++.+++.+++++... ++ .+++++++|
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------~~i~v~~~D 120 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------KTIVINHDD 120 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------SEEEEEESC
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------CceEEEcCc
Confidence 46799999999999999998873 347999999999999999998654 32 238889999
Q ss_pred CCCCCC-CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 221 LQDFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 221 ~~~~~~-~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.++.. ..++||+|++.- .. ....++..+.+.|||||.++++
T Consensus 121 a~~~~~~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 121 ANRLMAERHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HHHHHHHSTTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHhccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEE
Confidence 866431 135799999653 21 1237889999999999988886
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-09 Score=90.14 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=58.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCC--cee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG--RYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~fD 232 (284)
..++.+|||||||+|.++..++..+..+|+++|+++.|++.++++ . ..+++++++|+.++++++. .|
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---------~~~v~~i~~D~~~~~~~~~~~~~- 97 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---------DERLEVINEDASKFPFCSLGKEL- 97 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---------CTTEEEECSCTTTCCGGGSCSSE-
T ss_pred CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---------CCCeEEEEcchhhCChhHccCCc-
Confidence 456789999999999999998866446899999999999999887 2 2468999999999876531 23
Q ss_pred EEEecchh
Q 023288 233 VIWVQWCI 240 (284)
Q Consensus 233 ~Iv~~~~l 240 (284)
.|+++...
T Consensus 98 ~vv~NlPy 105 (249)
T 3ftd_A 98 KVVGNLPY 105 (249)
T ss_dssp EEEEECCT
T ss_pred EEEEECch
Confidence 55554443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6.6e-09 Score=99.37 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=77.7
Q ss_pred CCceEEEeeccccHHHHHH---HHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 157 QHLVALDCGSGIGRITKNL---LIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l---~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
+...|||+|||+|.+.... +++... +|++||-|+ |...+++....+++ ..+|+++.+|++++..+ .++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~-----~dkVtVI~gd~eev~LP-EKV 429 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW-----GSQVTVVSSDMREWVAP-EKA 429 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT-----GGGEEEEESCTTTCCCS-SCE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC-----CCeEEEEeCcceeccCC-ccc
Confidence 4467999999999984433 334433 689999997 66677777766555 56799999999998876 589
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
|+||+-+.=..+-.+-....+....|.|||||.++
T Consensus 430 DIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred CEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 99998765433333445578888899999999764
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=84.12 Aligned_cols=105 Identities=15% Similarity=0.046 Sum_probs=74.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC------------
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------------ 224 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~------------ 224 (284)
+..+|||+||| ..+..+++....+|+.+|.+++..+.|+++++..++. ...+++++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA---EGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---TTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCCceEEEEeCchhhhcccccccchhh
Confidence 45799999985 6777666421358999999999999999998765430 024688999986542
Q ss_pred ---C--------C-CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 225 ---T--------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 225 ---~--------~-~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+ . ..++||+|+.-.-. ....+..+.+.|+|||++ +.||+...
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~I-v~DNv~~r 158 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTL-LFDDYSQR 158 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEE-EETTGGGC
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEE-EEeCCcCC
Confidence 1 1 23689999987642 125666677999999988 55775433
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.2e-09 Score=90.12 Aligned_cols=105 Identities=12% Similarity=0.000 Sum_probs=68.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+|||+|.++..++.. ....+.++|++..+.... . .......++.....++....++.++||+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~p-----i---~~~~~g~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKP-----M---NVQSLGWNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCC-----C---CCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccc-----c---ccCcCCCCeEEEeccceehhcCCCCccE
Confidence 457789999999999999976654 333788999874331000 0 0000122455566665555566678999
Q ss_pred EEecchhccCChh--h---HHHHHHHHHhcCCCC-cEEEEE
Q 023288 234 IWVQWCIGHLTDD--D---FVSFFKRAKVGLKPG-GFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~--~---~~~~l~~~~r~LkpG-G~lii~ 268 (284)
|+|..+.+ .... | ...+++.+.++|+|| |.|++.
T Consensus 144 VlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 144 LLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 99987665 2211 1 123578889999999 999994
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.2e-09 Score=90.28 Aligned_cols=75 Identities=8% Similarity=0.059 Sum_probs=58.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCc--EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC----
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---- 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~--v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---- 228 (284)
..++.+|||||||+|.++. +. ++ .+ |+++|+++.|++.+++++.. ..+++++++|+.++++++
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~ 87 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTFNFGELAEK 87 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGCCHHHHHHH
T ss_pred CCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhcc--------CCceEEEECchhhCCHHHhhcc
Confidence 4567899999999999999 64 44 45 99999999999999988754 247899999998876432
Q ss_pred -CceeEEEecchh
Q 023288 229 -GRYDVIWVQWCI 240 (284)
Q Consensus 229 -~~fD~Iv~~~~l 240 (284)
+..|.|+++...
T Consensus 88 ~~~~~~vvsNlPY 100 (252)
T 1qyr_A 88 MGQPLRVFGNLPY 100 (252)
T ss_dssp HTSCEEEEEECCT
T ss_pred cCCceEEEECCCC
Confidence 234677776553
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-08 Score=97.89 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=80.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-------------------------------------------CCcEEEEeCCHH
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSH 191 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-------------------------------------------~~~v~gvD~S~~ 191 (284)
..++..|||.+||+|.++...+... ...++|+|+++.
T Consensus 188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~ 267 (703)
T 3v97_A 188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR 267 (703)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence 4567899999999999998776532 126999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC--CCceeEEEecchhcc-C-ChhhHHHHHHHH---HhcCCCCcE
Q 023288 192 FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGH-L-TDDDFVSFFKRA---KVGLKPGGF 264 (284)
Q Consensus 192 ~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~fD~Iv~~~~l~~-~-~~~~~~~~l~~~---~r~LkpGG~ 264 (284)
|++.|++++...|+ ...+++.++|+.++..+ .++||+|+++..+.. + ..+++..+.+.+ .+.+.|||.
T Consensus 268 av~~A~~N~~~agv-----~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~ 342 (703)
T 3v97_A 268 VIQRARTNARLAGI-----GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWN 342 (703)
T ss_dssp HHHHHHHHHHHTTC-----GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHHcCC-----CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCe
Confidence 99999999887665 34589999999887433 348999999966532 1 223444555544 455568998
Q ss_pred EEEE
Q 023288 265 FVLK 268 (284)
Q Consensus 265 lii~ 268 (284)
+++.
T Consensus 343 ~~il 346 (703)
T 3v97_A 343 LSLF 346 (703)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=97.01 Aligned_cols=114 Identities=11% Similarity=-0.013 Sum_probs=81.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-------------------CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCccee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-------------------~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~ 215 (284)
+.++.+|||.+||+|.++..++... ...++|+|+++.+++.|+.++...+.... ......
T Consensus 167 p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~-~~~~~~ 245 (541)
T 2ar0_A 167 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-LDHGGA 245 (541)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB-GGGTBS
T ss_pred cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc-ccccCC
Confidence 4567899999999999988776531 12699999999999999988755443110 001267
Q ss_pred EEEcCCCCCC-CCCCceeEEEecchhccCChh------------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 216 FFCVPLQDFT-PETGRYDVIWVQWCIGHLTDD------------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 216 ~~~~d~~~~~-~~~~~fD~Iv~~~~l~~~~~~------------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.++|....+ ...++||+|+++..+...... .-..++..+.+.|||||++.++-
T Consensus 246 I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 246 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 7888876543 234689999998776543211 12378999999999999988873
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.1e-09 Score=91.47 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=62.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--C---CC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P---ET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~---~~ 228 (284)
..++.+|||+|||+|..+..+++... .+|+|+|+|+.|++.|++++...+ .+++++++|+.+++ . ..
T Consensus 24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-------~~v~~v~~d~~~l~~~l~~~g~ 96 (301)
T 1m6y_A 24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------DRVSLFKVSYREADFLLKTLGI 96 (301)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------TTEEEEECCGGGHHHHHHHTTC
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEECCHHHHHHHHHhcCC
Confidence 45678999999999999999998753 479999999999999999986532 46899999988764 1 11
Q ss_pred CceeEEEecc
Q 023288 229 GRYDVIWVQW 238 (284)
Q Consensus 229 ~~fD~Iv~~~ 238 (284)
.+||.|++..
T Consensus 97 ~~~D~Vl~D~ 106 (301)
T 1m6y_A 97 EKVDGILMDL 106 (301)
T ss_dssp SCEEEEEEEC
T ss_pred CCCCEEEEcC
Confidence 5799999754
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=88.47 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=58.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCC--
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-- 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~---v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 229 (284)
..++.+|||||||+|.++..++..+..+ |+++|+++.|++.++++. . .+++++++|+.++++++-
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~---------~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G---------ELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G---------GGEEEEESCGGGCCGGGGSC
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C---------CCcEEEECChhcCChhHhcc
Confidence 4567899999999999999998765432 999999999999999984 1 468999999998875421
Q ss_pred ----ceeEEEecch
Q 023288 230 ----RYDVIWVQWC 239 (284)
Q Consensus 230 ----~fD~Iv~~~~ 239 (284)
..+.|+++..
T Consensus 110 ~~~~~~~~vv~NlP 123 (279)
T 3uzu_A 110 PGDEPSLRIIGNLP 123 (279)
T ss_dssp SSSSCCEEEEEECC
T ss_pred cccCCceEEEEccC
Confidence 2345666544
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.9e-08 Score=88.16 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=76.6
Q ss_pred CceEEEeeccccHHHHHHHHh-------------C---CC--cEEEEeCC-----------HHHHHHHHHHcCCCCCCCC
Q 023288 158 HLVALDCGSGIGRITKNLLIR-------------Y---FN--EVDLLEPV-----------SHFLDAARESLAPENHMAP 208 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~-------------~---~~--~v~gvD~S-----------~~~l~~ar~~~~~~~~~~~ 208 (284)
..+|+|+||++|..|..++.. . .+ +|...|+. +.+.+.+++....
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------ 126 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------ 126 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence 689999999999999877764 1 12 68888988 6666665554321
Q ss_pred CCCcceeEEEcCCCCC---CCCCCceeEEEecchhccCChh-------------------------------------hH
Q 023288 209 DMHKATNFFCVPLQDF---TPETGRYDVIWVQWCIGHLTDD-------------------------------------DF 248 (284)
Q Consensus 209 ~~~~~~~~~~~d~~~~---~~~~~~fD~Iv~~~~l~~~~~~-------------------------------------~~ 248 (284)
..+.-|..+....+ .+++++||+|+++.+|||+++. |+
T Consensus 127 --~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~ 204 (384)
T 2efj_A 127 --KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDF 204 (384)
T ss_dssp --CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHH
T ss_pred --CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHH
Confidence 01234555544443 4778999999999999998632 12
Q ss_pred HHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 249 VSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 249 ~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
..+|+..++.|+|||.+++.-....+
T Consensus 205 ~~FL~~Ra~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 205 TTFLRIHSEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECCCT
T ss_pred HHHHHHHHHHhccCCeEEEEEecCCC
Confidence 33477779999999999998554433
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.7e-08 Score=85.07 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=81.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
.+.+.+||-||.|.|..++.+++.. ..+|+.||+++.+++.+++.+..... ...-.++++++.+|...+- -..++||
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~-~~~~dpRv~v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNA-GSYDDPRFKLVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccc-cccCCCcEEEEechHHHHHhhccccCC
Confidence 3467899999999999999988542 34899999999999999998642100 0011367899999988864 3456899
Q ss_pred EEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+.-..=..-+... -..+++.+.++|+|||+++..
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 999643211111000 137999999999999999985
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.2e-08 Score=87.37 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=76.6
Q ss_pred CCCceEEEeeccccHHHHHHHH--------hC-------CC-cEEEEeCCHHHHHHHHHHcCCCCC-------CCCCCCc
Q 023288 156 NQHLVALDCGSGIGRITKNLLI--------RY-------FN-EVDLLEPVSHFLDAARESLAPENH-------MAPDMHK 212 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~--------~~-------~~-~v~gvD~S~~~l~~ar~~~~~~~~-------~~~~~~~ 212 (284)
..+.+|+|+|||+|..+..++. .. +. +|..-|+....-...=+.+..... .... ..
T Consensus 51 ~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~-~~ 129 (374)
T 3b5i_A 51 PPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAAD-GN 129 (374)
T ss_dssp CCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---C-CC
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhcccc-CC
Confidence 3468999999999999987633 11 22 688888777665444444332100 0000 00
Q ss_pred ceeEEEc---CCCCCCCCCCceeEEEecchhccCCh------------------------------------hhHHHHHH
Q 023288 213 ATNFFCV---PLQDFTPETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFK 253 (284)
Q Consensus 213 ~~~~~~~---d~~~~~~~~~~fD~Iv~~~~l~~~~~------------------------------------~~~~~~l~ 253 (284)
+.-|..+ .+-.-.+++++||+|+++.+||++++ .|+..+|+
T Consensus 130 ~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~ 209 (374)
T 3b5i_A 130 RSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR 209 (374)
T ss_dssp BCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1123333 33333477899999999999999971 25677899
Q ss_pred HHHhcCCCCcEEEEEeccCCC
Q 023288 254 RAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 254 ~~~r~LkpGG~lii~e~~~~~ 274 (284)
..++.|+|||.++++=....+
T Consensus 210 ~ra~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 210 ARAAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHHHEEEEEEEEEEEEECCC
T ss_pred HHHHHhCCCCEEEEEEecCCC
Confidence 999999999999997544433
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-08 Score=98.12 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=74.2
Q ss_pred CCceEEEeeccccHHHHHHHH--h--C----------CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLI--R--Y----------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~--~--~----------~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (284)
+...|||+|||+|.++...+. . + ..+|++||.|+..+...+.+.. .++ ...++++.+|++
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~-----~d~VtVI~gd~e 482 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW-----KRRVTIIESDMR 482 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT-----TTCSEEEESCGG
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC-----CCeEEEEeCchh
Confidence 356899999999999743222 1 1 1279999999977765555443 233 356999999999
Q ss_pred CCCCC-----CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 223 DFTPE-----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 223 ~~~~~-----~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
++..+ .+++|+||+-+.=.....+-....+..+.+.|||||.++
T Consensus 483 ev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 483 SLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp GHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred hcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 98652 468999998776433333335568888889999999764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-08 Score=93.40 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=59.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCC--CCCCCCCCcceeEEEcCCCCC-CC-CCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATNFFCVPLQDF-TP-ETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~--~~~~~~~~~~~~~~~~d~~~~-~~-~~~~fD 232 (284)
++.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++++... ++ .+++++++|+.++ +. ++++||
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl------~~i~~i~~Da~~~L~~~~~~~fD 165 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG------KDVNILTGDFKEYLPLIKTFHPD 165 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT------CEEEEEESCGGGSHHHHHHHCCS
T ss_pred CCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC------CcEEEEECcHHHhhhhccCCCce
Confidence 4689999999999999977755 457999999999999999998643 22 4689999999875 21 235899
Q ss_pred EEEec
Q 023288 233 VIWVQ 237 (284)
Q Consensus 233 ~Iv~~ 237 (284)
+|++.
T Consensus 166 vV~lD 170 (410)
T 3ll7_A 166 YIYVD 170 (410)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99986
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-08 Score=86.91 Aligned_cols=106 Identities=14% Similarity=-0.008 Sum_probs=67.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||||||+|.++..++.. ....|+|+|++..+...+... .....++.....++....++..++|+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~--------~~~g~~ii~~~~~~dv~~l~~~~~Dv 159 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR--------TTLGWNLIRFKDKTDVFNMEVIPGDT 159 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC--------CBTTGGGEEEECSCCGGGSCCCCCSE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc--------ccCCCceEEeeCCcchhhcCCCCcCE
Confidence 457789999999999999976643 333799999986542222110 00122333444333323345578999
Q ss_pred EEecchhccCChh-----hHHHHHHHHHhcCCCC--cEEEEEe
Q 023288 234 IWVQWCIGHLTDD-----DFVSFFKRAKVGLKPG--GFFVLKE 269 (284)
Q Consensus 234 Iv~~~~l~~~~~~-----~~~~~l~~~~r~LkpG--G~lii~e 269 (284)
|+|..+.. .... ....++.-+.++|+|| |.|++.=
T Consensus 160 VLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 160 LLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp EEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred EEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 99987765 3211 1223577778999999 9999863
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=85.28 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=79.6
Q ss_pred CCCceEEEeeccccHHHHHHHHh------------C---CC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR------------Y---FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~------------~---~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~ 218 (284)
....+|+|+||++|..+..+... + .+ +|+..|+........-+.+.... . ..+.-|..
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~----~~~~~f~~ 124 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-D----VDGVCFIN 124 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-S----CTTCEEEE
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-c----cCCCEEEE
Confidence 35678999999999877654432 1 22 78999999988888877765321 0 01223444
Q ss_pred c---CCCCCCCCCCceeEEEecchhccCCh-------------------------------hhHHHHHHHHHhcCCCCcE
Q 023288 219 V---PLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------DDFVSFFKRAKVGLKPGGF 264 (284)
Q Consensus 219 ~---d~~~~~~~~~~fD~Iv~~~~l~~~~~-------------------------------~~~~~~l~~~~r~LkpGG~ 264 (284)
+ .+-.-.++++++|+|+++.++|++++ .|+..+|+..++.|+|||.
T Consensus 125 gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~ 204 (359)
T 1m6e_X 125 GVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR 204 (359)
T ss_dssp EEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred ecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 4 33334577899999999999999863 2456779999999999999
Q ss_pred EEEEecc
Q 023288 265 FVLKENI 271 (284)
Q Consensus 265 lii~e~~ 271 (284)
+++.=..
T Consensus 205 mvl~~~g 211 (359)
T 1m6e_X 205 MVLTILG 211 (359)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9997443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-08 Score=86.15 Aligned_cols=84 Identities=18% Similarity=0.113 Sum_probs=59.0
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCC--CCCCC-CCcceeEEEcCCCCC-CCCCCceeEE
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN--HMAPD-MHKATNFFCVPLQDF-TPETGRYDVI 234 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~--~~~~~-~~~~~~~~~~d~~~~-~~~~~~fD~I 234 (284)
.+|||+|||+|..+..++..+. +|+++|+++.+.+.+++.+.... ..... ...+++++++|..++ +....+||+|
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 7999999999999999998876 59999999987666555432110 00000 124689999998764 2112479999
Q ss_pred EecchhccC
Q 023288 235 WVQWCIGHL 243 (284)
Q Consensus 235 v~~~~l~~~ 243 (284)
++...+.+-
T Consensus 169 ~lDP~y~~~ 177 (258)
T 2oyr_A 169 YLDPMFPHK 177 (258)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCCCc
Confidence 998777653
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=90.17 Aligned_cols=105 Identities=11% Similarity=-0.128 Sum_probs=74.1
Q ss_pred ceEEEeeccccHHHHHHHHhC----------------CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCC
Q 023288 159 LVALDCGSGIGRITKNLLIRY----------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~----------------~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~ 222 (284)
.+|||.+||+|.+...++... ...++|+|+++.++..|+.++...+. ..++.+.++|..
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi-----~~~i~i~~gDtL 320 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI-----DFNFGKKNADSF 320 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC-----CCBCCSSSCCTT
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC-----Ccccceeccchh
Confidence 499999999999987764321 22699999999999999988754443 122333566654
Q ss_pred CCC-CCCCceeEEEecchhcc-------------------------CChh--hHHHHHHHHHhcCCCCcEEEEE
Q 023288 223 DFT-PETGRYDVIWVQWCIGH-------------------------LTDD--DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 223 ~~~-~~~~~fD~Iv~~~~l~~-------------------------~~~~--~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..+ ....+||+|+++..+.. ++.. .--.++..+.+.|+|||++.++
T Consensus 321 ~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiV 394 (544)
T 3khk_A 321 LDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALL 394 (544)
T ss_dssp TSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEE
Confidence 433 34578999999866543 1100 0126899999999999998776
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.1e-07 Score=84.38 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=80.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--C-CCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--T-PET 228 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~----~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~~ 228 (284)
.++.+|+|.+||+|.+...++... ...++|+|+++.++..|+.++...+.. ..++.+.++|.... + ...
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----~~~~~I~~gDtL~~d~p~~~~ 295 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----IENQFLHNADTLDEDWPTQEP 295 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEESCTTTSCSCCSSC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----cCccceEecceeccccccccc
Confidence 467799999999999988777653 237999999999999999886544331 13567888887655 3 345
Q ss_pred CceeEEEecchhcc-------------------CC---hhhHHHHHHHHHhcCC-CCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGH-------------------LT---DDDFVSFFKRAKVGLK-PGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~-------------------~~---~~~~~~~l~~~~r~Lk-pGG~lii~e 269 (284)
.+||+|+++..+.. ++ ..+ -.++..+.+.|+ |||++.++-
T Consensus 296 ~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 296 TNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp CCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEE
T ss_pred ccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEe
Confidence 78999998854421 10 001 248999999999 999987763
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-07 Score=78.77 Aligned_cols=105 Identities=12% Similarity=-0.059 Sum_probs=65.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+|||+||++|.++..+++. +...|+|+|++..+...... ......++.....++.-..+..+.+|+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--------~~~~~~~iv~~~~~~di~~l~~~~~Dl 150 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--------MQTLGWNIVKFKDKSNVFTMPTEPSDT 150 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--------CCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--------ccccCCceEEeecCceeeecCCCCcCE
Confidence 457889999999999999987754 34478999997543110000 000012233333333323344578999
Q ss_pred EEecchhccCChhh-----HHHHHHHHHhcCCCC-cEEEEE
Q 023288 234 IWVQWCIGHLTDDD-----FVSFFKRAKVGLKPG-GFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~-----~~~~l~~~~r~LkpG-G~lii~ 268 (284)
|+|..... ....+ ...++.-+.++|+|| |.|++.
T Consensus 151 VlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 151 LLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp EEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred EeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99976655 32211 134577778999999 999996
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-07 Score=82.96 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=79.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC--CCCCCcceeEEEcCCCCCC----CCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM--APDMHKATNFFCVPLQDFT----PETG 229 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~--~~~~~~~~~~~~~d~~~~~----~~~~ 229 (284)
.++.+||-||.|.|..++.+++....+|+.||+++.+++.+++.+....-. ......+++++..|...+- -..+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 346799999999999999998655558999999999999999987642111 1111245788888875442 1235
Q ss_pred ceeEEEecchh-------ccCCh-hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCI-------GHLTD-DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l-------~~~~~-~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+||+|+.-..- ..... .-...+++.+.++|+|||+++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 89999965321 11110 11357899999999999999875
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.3e-07 Score=86.38 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=75.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC----CcEEEEeCCHHHHHHH--HHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAA--RESLAPENHMAPDMHKATNFFCVPLQDFT-PET 228 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~----~~v~gvD~S~~~l~~a--r~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~ 228 (284)
.++.+|||.|||+|.+...++.... .+++|+|+++.+++.| +.+....++... .....+...|+.... ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG--i~~~~I~~dD~L~~~~~~~ 397 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS--NNAPTITGEDVCSLNPEDF 397 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT--TBCCEEECCCGGGCCGGGG
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC--CCcceEEecchhccccccc
Confidence 3577999999999999998886543 2799999999999999 555443221100 112244455554432 234
Q ss_pred CceeEEEecchhcc-CC-hh-------------------------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGH-LT-DD-------------------------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~-~~-~~-------------------------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++||+|+++..+.. .. +. -...++..+.+.|+|||++.+.-
T Consensus 398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 68999999876622 11 00 13357889999999999988863
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-07 Score=79.48 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=70.9
Q ss_pred CCCceEEEeeccccHHHHHHHHh-------CC------CcEEEEeCCH---HHHH-----------HHHHHcCCCCCC--
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR-------YF------NEVDLLEPVS---HFLD-----------AARESLAPENHM-- 206 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-------~~------~~v~gvD~S~---~~l~-----------~ar~~~~~~~~~-- 206 (284)
.++.+|||+|||+|..+..+++. .+ .+++++|..| +++. .+++.+......
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35679999999999998876543 33 2699999776 5555 445543321000
Q ss_pred ------CCCCCcceeEEEcCCCCC-C-CCC---CceeEEEecc-hhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 207 ------APDMHKATNFFCVPLQDF-T-PET---GRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 207 ------~~~~~~~~~~~~~d~~~~-~-~~~---~~fD~Iv~~~-~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
......+++++.+|+.+. + .+. +.||+|+.-. .-...++---..+++.++++|+|||+|+.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 000124678889997663 3 221 2799999853 22222210124799999999999999885
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-07 Score=70.70 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=59.7
Q ss_pred CCceEEEeecccc-HHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC-CceeE
Q 023288 157 QHLVALDCGSGIG-RITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET-GRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG-~~s~~l~~-~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~fD~ 233 (284)
++.+|||||||.| ..+..|++ .++ .|+++|+++..++ +++.|+.+...+. ..||+
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------------~v~dDiF~P~~~~Y~~~DL 92 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------------IVRDDITSPRMEIYRGAAL 92 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------------EECCCSSSCCHHHHTTEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------------eEEccCCCCcccccCCcCE
Confidence 4679999999999 69998886 555 4999999874433 6778887633221 37999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++... +.++...+.++++.. |.-++|.
T Consensus 93 IYsirP-----P~El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 93 IYSIRP-----PAEIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp EEEESC-----CTTTHHHHHHHHHHH--TCEEEEE
T ss_pred EEEcCC-----CHHHHHHHHHHHHHc--CCCEEEE
Confidence 988765 446667777777643 4566665
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=78.05 Aligned_cols=115 Identities=15% Similarity=0.066 Sum_probs=82.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
+.++.+|||+.||.|.-+..++..+.. .|+++|+|+.-++..++++...+........++.+...|...++ ...+.||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 678899999999999999988876544 79999999999998888776544322222356778888877654 2346899
Q ss_pred EEEe----cch----hcc-------CChhh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWV----QWC----IGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~----~~~----l~~-------~~~~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
.|++ +.. +.. ....+ ...+|.++.+.|||||+|+.+.
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT 284 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST 284 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 9993 331 111 11111 2468889999999999998863
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-06 Score=75.58 Aligned_cols=107 Identities=9% Similarity=0.042 Sum_probs=76.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhC------CCcEEEEeCCHH--------------------------HHHHHHHHcCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSH--------------------------FLDAARESLAPE 203 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~------~~~v~gvD~S~~--------------------------~l~~ar~~~~~~ 203 (284)
..+.+|||+|+..|..+..++... ..+|+++|.... .++.+++++...
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 456799999999999988775421 237999996421 467788888765
Q ss_pred CCCCCCCCcceeEEEcCCCCC-C-CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 204 NHMAPDMHKATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 204 ~~~~~~~~~~~~~~~~d~~~~-~-~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+. ..+++++.+++.+. + .+.++||+|+.-.-.. +.....+..+...|+|||++++ |++
T Consensus 185 gl~----~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~-DD~ 245 (282)
T 2wk1_A 185 DLL----DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIV-DDY 245 (282)
T ss_dssp TCC----STTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEE-SSC
T ss_pred CCC----cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEE-cCC
Confidence 541 25799999987653 2 3346899999765421 1345789999999999997777 443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=72.15 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=68.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+||.+|.++..+++++. .|++||+.+ |-.... . ..++++++.|...+.++.++||+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~~l~----~--------~~~V~~~~~d~~~~~~~~~~~D~v 274 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQSLM----D--------TGQVTWLREDGFKFRPTRSNISWM 274 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCHHHH----T--------TTCEEEECSCTTTCCCCSSCEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cChhhc----c--------CCCeEEEeCccccccCCCCCcCEE
Confidence 45789999999999999999887766 599999864 222111 1 256899999998888777789999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|-.+.. +......+......+..++.++...
T Consensus 275 vsDm~~~---p~~~~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 275 VCDMVEK---PAKVAALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp EECCSSC---HHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred EEcCCCC---hHHhHHHHHHHHhccccceEEEEEE
Confidence 9977653 2233344444444445556655544
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=9.1e-06 Score=68.66 Aligned_cols=105 Identities=11% Similarity=-0.033 Sum_probs=60.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc-eeEEEc-CCCCCCCCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCV-PLQDFTPETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~-~~~~~~-d~~~~~~~~~~f 231 (284)
.+++.+|+|+||+.|.++...++.. ...|.|.++.... . ... ......+.+ +.|.++ |+.++. ...+
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P--~~~~~~Gv~~i~~~~G~Df~~~~--~~~~ 140 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEP--MLMQSYGWNIVTMKSGVDVFYKP--SEIS 140 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCC--CCCCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCC--CcccCCCceEEEeeccCCccCCC--CCCC
Confidence 5689999999999999999766431 2234565554220 0 000 000000111 244446 887643 3579
Q ss_pred eEEEecchhccCChh--h---HHHHHHHHHhcCCCCc-EEEEEec
Q 023288 232 DVIWVQWCIGHLTDD--D---FVSFFKRAKVGLKPGG-FFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~--~---~~~~l~~~~r~LkpGG-~lii~e~ 270 (284)
|+|+|-..-. .+.. | ...++.-+.++|+||| .|++.=.
T Consensus 141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 9999865432 2111 1 1125667779999999 8888543
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-05 Score=68.17 Aligned_cols=107 Identities=10% Similarity=-0.003 Sum_probs=67.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD 232 (284)
..++.+|||+||++|.++..++.. +...|.|+|+...-.+.-+ ..+..+ ...+.+... |+..++. .++|
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~------w~lV~~~~~~Dv~~l~~--~~~D 162 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYG------WNIVTMKSGVDVFYRPS--ECCD 162 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTT------GGGEEEECSCCTTSSCC--CCCS
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcC------CcceEEEeccCHhhCCC--CCCC
Confidence 467789999999999999966644 3448999998653110000 000000 123667776 8766654 5699
Q ss_pred EEEecchhccCChhh-----HHHHHHHHHhcCCCC-cEEEEEecc
Q 023288 233 VIWVQWCIGHLTDDD-----FVSFFKRAKVGLKPG-GFFVLKENI 271 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~-----~~~~l~~~~r~LkpG-G~lii~e~~ 271 (284)
+|+|--. .--+.+. -..+|.-+.+.|++| |.|+|.=.+
T Consensus 163 ~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 163 TLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred EEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 9997655 3222211 123667778899999 899885443
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.07 E-value=9.3e-06 Score=69.89 Aligned_cols=72 Identities=17% Similarity=0.058 Sum_probs=59.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 229 (284)
+.++..++|++||.|..+..+++. ..+|+|+|.++.+++.|++ +.. .++.++.+++.++. ...+
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~---------~rv~lv~~~f~~l~~~L~~~g~~ 88 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL---------PGLTVVQGNFRHLKRHLAALGVE 88 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC---------TTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc---------CCEEEEECCcchHHHHHHHcCCC
Confidence 557789999999999999999987 3479999999999999998 643 36889999988763 2225
Q ss_pred ceeEEEec
Q 023288 230 RYDVIWVQ 237 (284)
Q Consensus 230 ~fD~Iv~~ 237 (284)
+||.|++.
T Consensus 89 ~vDgIL~D 96 (285)
T 1wg8_A 89 RVDGILAD 96 (285)
T ss_dssp CEEEEEEE
T ss_pred CcCEEEeC
Confidence 79999964
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-06 Score=95.60 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=56.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPET 228 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~------~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~ 228 (284)
.+..+|||||.|+|..+..++... +.+++.+|+|+.+.+.++++++. ..++....|..+. ++..
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---------~di~~~~~d~~~~~~~~~ 1309 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---------LHVTQGQWDPANPAPGSL 1309 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---------HTEEEECCCSSCCCC---
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---------cccccccccccccccCCC
Confidence 456899999999998877666542 23799999999988888777542 1122222233332 2244
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++||+|++..++|..+ ++...+++++++|||||.+++.|.
T Consensus 1310 ~~ydlvia~~vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1310 GKADLLVCNCALATLG--DPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp --CCEEEEECC----------------------CCEEEEEEC
T ss_pred CceeEEEEcccccccc--cHHHHHHHHHHhcCCCcEEEEEec
Confidence 6899999999998766 667899999999999999999874
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.2e-05 Score=65.44 Aligned_cols=110 Identities=12% Similarity=0.016 Sum_probs=69.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD 232 (284)
..++.+|||+||++|.++...+.. +...|.|+|+-..-.+.- ...+..| ...++|.++ |+..++. .++|
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~g------wn~v~fk~gvDv~~~~~--~~~D 146 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYG------WNIVKLMSGKDVFYLPP--EKCD 146 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTT------TTSEEEECSCCGGGCCC--CCCS
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcC------cCceEEEeccceeecCC--cccc
Confidence 567889999999999999966654 334899999865322100 0011111 245788888 8755543 5799
Q ss_pred EEEecchhccCC-hhh---HHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 233 VIWVQWCIGHLT-DDD---FVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 233 ~Iv~~~~l~~~~-~~~---~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
.|+|--.=..-. .-+ -..+|.-+.+.|++ |.|++.=.+.-.
T Consensus 147 tllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 147 TLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred EEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 999865432111 112 12367777899999 888886444433
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=69.00 Aligned_cols=108 Identities=17% Similarity=0.038 Sum_probs=72.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHh---C-----------CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR---Y-----------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~---~-----------~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d 220 (284)
+.++.+|+|-+||+|.+....... . -..++|+|+++.+...|+-++--.+. ....+..+|
T Consensus 215 p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~------~~~~I~~~d 288 (530)
T 3ufb_A 215 PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL------EYPRIDPEN 288 (530)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC------SCCEEECSC
T ss_pred cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC------ccccccccc
Confidence 566779999999999998766542 1 12599999999999999876543222 123456666
Q ss_pred CCCCCC----CCCceeEEEecchhccCCh--------------hhHHHHHHHHHhcCC-------CCcEEEEE
Q 023288 221 LQDFTP----ETGRYDVIWVQWCIGHLTD--------------DDFVSFFKRAKVGLK-------PGGFFVLK 268 (284)
Q Consensus 221 ~~~~~~----~~~~fD~Iv~~~~l~~~~~--------------~~~~~~l~~~~r~Lk-------pGG~lii~ 268 (284)
....+. +..+||+|+++..+..-.+ ..-..++..+.+.|| |||++.++
T Consensus 289 tL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avV 361 (530)
T 3ufb_A 289 SLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVV 361 (530)
T ss_dssp TTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred cccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEE
Confidence 554332 2347999999876632110 012346777888886 79988876
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00021 Score=63.41 Aligned_cols=115 Identities=9% Similarity=0.073 Sum_probs=83.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCC-------C--C------CCCCcceeEEEcC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH-------M--A------PDMHKATNFFCVP 220 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~-------~--~------~~~~~~~~~~~~d 220 (284)
+...|+.+|||.......+...+.. .++=||. |.+++.-++.+...+. . . .....+..++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4578999999999999988875443 5666776 7888777666543210 0 0 0012467788889
Q ss_pred CCCCC--------C-CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 221 LQDFT--------P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 221 ~~~~~--------~-~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+.+.. . ......++++-.++.|++.+....+++.+.+.. |+|.+++.|.+.+
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 88732 1 234678999999999999999999999999987 8888888887655
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00011 Score=64.04 Aligned_cols=59 Identities=19% Similarity=0.022 Sum_probs=45.6
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
+..++..++... ..++..|||++||+|..+..++..+. +++|+|+++.+++.|++++..
T Consensus 221 p~~l~~~~i~~~-----~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 221 PLELAERLVRMF-----SFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp CHHHHHHHHHHH-----CCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 345555555432 24678999999999999998775554 699999999999999998753
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00035 Score=62.96 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=73.7
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC--------CCCc
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------ETGR 230 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~ 230 (284)
.+++|+-||.|.++..+...++..+.++|+++..++..+.++.. ..+++.|+.++.. ....
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~-----------~~~~~~DI~~~~~~~~~~~~~~~~~ 71 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR-----------SLHVQEDVSLLNAEIIKGFFKNDMP 71 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT-----------SEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC-----------CceEecChhhcCHHHHHhhcccCCC
Confidence 57999999999999999988988889999999999999988643 4567788877642 2357
Q ss_pred eeEEEecchhccCC--------hh--hHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 231 YDVIWVQWCIGHLT--------DD--DFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 231 fD~Iv~~~~l~~~~--------~~--~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+|+|+.......++ ++ .+-.-+-++...++| .+++.||+..
T Consensus 72 ~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~g 122 (376)
T 3g7u_A 72 IDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPG 122 (376)
T ss_dssp CCEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTT
T ss_pred eeEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchH
Confidence 99999766544443 11 122223344555688 4777799754
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0003 Score=62.63 Aligned_cols=103 Identities=19% Similarity=0.207 Sum_probs=68.6
Q ss_pred CceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC---CCcee
Q 023288 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYD 232 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~fD 232 (284)
..+|+|+-||.|.++..+...+ +..|.++|+++..++..+.++.. ..+++.|+.++... ...+|
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----------~~~~~~Di~~~~~~~~~~~~~D 70 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------TQLLAKTIEGITLEEFDRLSFD 70 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECSCGGGCCHHHHHHHCCS
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----------cccccCCHHHccHhHcCcCCcC
Confidence 3689999999999999998888 44799999999999999999754 34667888776421 12589
Q ss_pred EEEecchhccCChh-------h-HHHHHH---HHHhcCC--CCcEEEEEeccCC
Q 023288 233 VIWVQWCIGHLTDD-------D-FVSFFK---RAKVGLK--PGGFFVLKENIAR 273 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~-------~-~~~~l~---~~~r~Lk--pGG~lii~e~~~~ 273 (284)
+|+.......++.. + ...++. ++.+.++ |. +++.||+..
T Consensus 71 ~l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~ 122 (343)
T 1g55_A 71 MILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKG 122 (343)
T ss_dssp EEEECCC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETT
T ss_pred EEEEcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCcc
Confidence 99977654433211 1 112333 3444555 64 666688764
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00069 Score=58.28 Aligned_cols=102 Identities=11% Similarity=-0.032 Sum_probs=77.3
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCCceeE
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDV 233 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~fD~ 233 (284)
+..+||+=+|+|.++..++++ ..+++.+|.++..++..++++.. ..+++++..|.... ..+..+||+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 456899999999999999974 47899999999999999999865 35688888885431 133357999
Q ss_pred EEecchhccCChhhHHHHHHHHHh--cCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r--~LkpGG~lii~e~ 270 (284)
|++--....-. +...+++.+.+ .+.|+|++++--.
T Consensus 163 VfiDPPYe~k~--~~~~vl~~L~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 163 IFIDPSYERKE--EYKEIPYAIKNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp EEECCCCCSTT--HHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EEECCCCCCCc--HHHHHHHHHHHhCccCCCeEEEEEEe
Confidence 99988766422 55566666655 4678999888543
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0074 Score=52.80 Aligned_cols=109 Identities=11% Similarity=-0.037 Sum_probs=77.4
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---------CCCC
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PETG 229 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~ 229 (284)
..|++||||-=.....+.......|+=|| -|..++..++.+...+. ....+..++.+|+.+ . +...
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~---~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGV---TPTADRREVPIDLRQ-DWPPALRSAGFDPS 178 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTC---CCSSEEEEEECCTTS-CHHHHHHHTTCCTT
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCC---CCCCCeEEEecchHh-hHHHHHHhccCCCC
Confidence 46999999976554444311113688899 59999999888853221 013467788889876 3 1223
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
.-=++++-.+++|+++++...+++.+...+.||+.+++ |.+..
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~ 221 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPL 221 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCT
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCC
Confidence 45678888999999999999999999999999988777 44443
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0029 Score=55.88 Aligned_cols=101 Identities=14% Similarity=0.025 Sum_probs=70.2
Q ss_pred CceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEEe
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv~ 236 (284)
+.+++|+-||.|.++..+...++..+.++|+++..++..+.++... . +.|+.++... -..+|+|+.
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~--------~-----~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------P-----EGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------C-----BSCGGGSCGGGSCCCSEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC--------C-----cCCHHHcCHhhCCCCCEEEE
Confidence 4789999999999999999888888999999999999999997642 1 4666655321 125899996
Q ss_pred cchhccCCh---------h--hHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 237 QWCIGHLTD---------D--DFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 237 ~~~l~~~~~---------~--~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
......++. + .+-.-+-++.+.++|. +++.||+..
T Consensus 78 gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~g 123 (327)
T 2c7p_A 78 GFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKN 123 (327)
T ss_dssp ECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGG
T ss_pred CCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHH
Confidence 644333321 1 1222333445556884 777798753
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.002 Score=57.48 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=49.4
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~ 224 (284)
++..|||||.|.|.+|..|+... +.+|+++|+.+.++...++.. . ..+++++.+|+.++
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--------~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--------GSPLQILKRDPYDW 117 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--------TSSCEEECSCTTCH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--------CCCEEEEECCccch
Confidence 35789999999999999999763 457999999999999999886 2 24688899998654
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.001 Score=58.64 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=56.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (284)
..++..++|..||.|..+..+++...+ +|+|+|.++.+++.++ ++. ..+++++.+++.++. ..
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~---------~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID---------DPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC---------CTTEEEEESCGGGHHHHHHHTT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc---------CCcEEEEeCCHHHHHHHHHhcC
Confidence 567889999999999999999976432 7999999999999994 442 356889998887753 11
Q ss_pred -CCceeEEEec
Q 023288 228 -TGRYDVIWVQ 237 (284)
Q Consensus 228 -~~~fD~Iv~~ 237 (284)
.+++|.|+..
T Consensus 125 ~~~~vDgILfD 135 (347)
T 3tka_A 125 LIGKIDGILLD 135 (347)
T ss_dssp CTTCEEEEEEE
T ss_pred CCCcccEEEEC
Confidence 1368999844
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.002 Score=54.83 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=46.0
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
+..++..++... ..++..|||..||+|..+...... ..+++|+|+++.+++.+++++..
T Consensus 198 p~~l~~~~i~~~-----~~~~~~vlD~f~GsGtt~~~a~~~-gr~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 198 PRDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp CHHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHh
Confidence 345555555433 347789999999999999976644 45799999999999999999865
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0056 Score=53.98 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=72.1
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcE-EEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC---CCCc
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEV-DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGR 230 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v-~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~ 230 (284)
...+++|+-||.|.++..+...++ ..+ .++|+++..++..+.++... +++.|+.++.. +...
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------------~~~~DI~~~~~~~i~~~~ 76 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------------VQVKNLDSISIKQIESLN 76 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------------CBCCCTTTCCHHHHHHTC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------------cccCChhhcCHHHhccCC
Confidence 467999999999999999887775 456 79999999999999997541 45677777652 1236
Q ss_pred eeEEEecchhccC--C--------hhhHHHHHHHHHh-cCCC---CcEEEEEeccCC
Q 023288 231 YDVIWVQWCIGHL--T--------DDDFVSFFKRAKV-GLKP---GGFFVLKENIAR 273 (284)
Q Consensus 231 fD~Iv~~~~l~~~--~--------~~~~~~~l~~~~r-~Lkp---GG~lii~e~~~~ 273 (284)
+|+++.......+ + .+....++.++.+ +++. --.+++.||+..
T Consensus 77 ~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~g 133 (327)
T 3qv2_A 77 CNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPL 133 (327)
T ss_dssp CCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGG
T ss_pred CCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhh
Confidence 8999976554444 1 1122245555555 4432 135788899753
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0057 Score=52.65 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=59.0
Q ss_pred CCCCceEEEeec------cccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC
Q 023288 155 NNQHLVALDCGS------GIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (284)
Q Consensus 155 ~~~~~~VLDiGc------GtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (284)
.+.+.+|||+|+ -+|.+. +.+.+.. .|+++|+.+-.. .. ..++++|......
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~s-----------------da-~~~IqGD~~~~~~ 166 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFVS-----------------DA-DSTLIGDCATVHT 166 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCBC-----------------SS-SEEEESCGGGEEE
T ss_pred ecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCccccc-----------------CC-CeEEEcccccccc
Confidence 567899999996 677632 2222332 699999864210 11 1458888765433
Q ss_pred CCCceeEEEecchh---ccCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023288 227 ETGRYDVIWVQWCI---GHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l---~~~~~~~------~~~~l~~~~r~LkpGG~lii~ 268 (284)
.++||+|+|-..- .+...+. .+.++.-+.+.|+|||.|++.
T Consensus 167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 3689999965421 2211111 445677778899999999997
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.008 Score=53.13 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=69.0
Q ss_pred ceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC---CCCceeE
Q 023288 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDV 233 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD~ 233 (284)
.+++|+-||.|.++..+...++ ..|.++|+++..++..+.++.. ..+...|+.++.. +...+|+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----------~~~~~~DI~~~~~~~~~~~~~D~ 72 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----------TNLLNRNIQQLTPQVIKKWNVDT 72 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECCCGGGCCHHHHHHTTCCE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----------CceeccccccCCHHHhccCCCCE
Confidence 5899999999999999887776 4688999999999999998754 2356677776642 2236899
Q ss_pred EEecchhccCCh-------hh-HHHHHH---HHHhcCC-CCcEEEEEeccCC
Q 023288 234 IWVQWCIGHLTD-------DD-FVSFFK---RAKVGLK-PGGFFVLKENIAR 273 (284)
Q Consensus 234 Iv~~~~l~~~~~-------~~-~~~~l~---~~~r~Lk-pGG~lii~e~~~~ 273 (284)
++.......++. ++ ...++. ++.+.++ | .+++.||+..
T Consensus 73 l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~g 122 (333)
T 4h0n_A 73 ILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKG 122 (333)
T ss_dssp EEECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTT
T ss_pred EEecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchh
Confidence 996544333310 11 112223 3444454 6 5788899864
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.021 Score=49.50 Aligned_cols=108 Identities=16% Similarity=0.069 Sum_probs=73.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCc--EEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC----C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----T 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~--v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~ 228 (284)
.....+++|+=||.|.++..+...++.. |.++|+++..++..+.++.. ..+...|+.++... .
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~-----------~~~~~~DI~~i~~~~i~~~ 81 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG-----------KIMYVGDVRSVTQKHIQEW 81 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT-----------CEEEECCGGGCCHHHHHHT
T ss_pred cCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC-----------CceeCCChHHccHHHhccc
Confidence 4566799999999999999988888874 69999999999988887643 34677888776421 1
Q ss_pred CceeEEEecchhccC----------Chh--hHHHHHHHHHhcCCCC-cE----EEEEeccCC
Q 023288 229 GRYDVIWVQWCIGHL----------TDD--DFVSFFKRAKVGLKPG-GF----FVLKENIAR 273 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~----------~~~--~~~~~l~~~~r~LkpG-G~----lii~e~~~~ 273 (284)
+.+|+++.......+ .++ .+-.-+-++.+.++|. |. +++.||+..
T Consensus 82 ~~~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~~~~~~P~~~l~ENV~g 143 (295)
T 2qrv_A 82 GPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVA 143 (295)
T ss_dssp CCCSEEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCCTTCCCCCEEEEEEESS
T ss_pred CCcCEEEecCCCccccccCccccccccccchhHHHHHHHHHHhCcccccCCccEEEEEcCcc
Confidence 369999965322211 111 1222334455556776 32 777799864
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.021 Score=45.89 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=60.5
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+||..|+ |.|..+..++.....+|+++|.+++.++.+++. +. .. . .|..+..
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~-------~~-~--~d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GV-------EY-V--GDSRSVDFADEILE 101 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CC-------SE-E--EETTCSTHHHHHHH
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC-------CE-E--eeCCcHHHHHHHHH
Confidence 557789999994 567777666654344799999999988877642 11 01 1 1222111
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....+|+|+.+-. . ..+..+.+.|+|||++++.-
T Consensus 102 ~~~~~~~D~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 102 LTDGYGVDVVLNSLA-------G--EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp HTTTCCEEEEEECCC-------T--HHHHHHHHTEEEEEEEEECS
T ss_pred HhCCCCCeEEEECCc-------h--HHHHHHHHHhccCCEEEEEc
Confidence 11236999996542 1 46788889999999998864
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.023 Score=50.68 Aligned_cols=96 Identities=14% Similarity=-0.014 Sum_probs=65.3
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-----CCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TPE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 227 (284)
..++.+||-+|||. |..+..+++.... .|+++|.++..++.+++.-.. ..+...-.++ ...
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~~~~ 255 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------------HVINSKTQDPVAAIKEIT 255 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC------------EEecCCccCHHHHHHHhc
Confidence 56788999999986 8888888775443 699999999999999865322 1111111111 011
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+.||+|+-+-.- . ..+..+.+.|+|||++++.-.
T Consensus 256 ~gg~D~vid~~g~------~--~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 256 DGGVNFALESTGS------P--EILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp TSCEEEEEECSCC------H--HHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEECCCC------H--HHHHHHHHHHhcCCEEEEeCC
Confidence 2379999854331 1 567888999999999988643
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.018 Score=53.48 Aligned_cols=107 Identities=18% Similarity=0.092 Sum_probs=70.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC---------
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--------- 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------- 227 (284)
...+++|+=||.|.++..+...++..|.++|+++...+.-+.++... +...+++.|+.++...
T Consensus 87 ~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--------p~~~~~~~DI~~i~~~~~~~~~~~~ 158 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--------PATHHFNEDIRDITLSHQEGVSDEA 158 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--------TTTCEEESCTHHHHCTTCTTSCHHH
T ss_pred ccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--------CCcceeccchhhhhhccccccchhh
Confidence 45799999999999999888777777999999999999998887431 2234566776654311
Q ss_pred --------CCceeEEEecchhccCChh--------------------hHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 228 --------TGRYDVIWVQWCIGHLTDD--------------------DFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 228 --------~~~fD~Iv~~~~l~~~~~~--------------------~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
...+|+|+.......++.. .+-.-+-++.+.++| .+++.||+..
T Consensus 159 ~~~~i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rP--k~fvlENV~g 230 (482)
T 3me5_A 159 AAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP--AMFVLENVKN 230 (482)
T ss_dssp HHHHHHHHSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCC--SEEEEEEETT
T ss_pred HHhhhhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCC--cEEEEeCcHH
Confidence 1358999865544433211 111222334445677 4777899764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.018 Score=51.96 Aligned_cols=102 Identities=9% Similarity=-0.129 Sum_probs=65.1
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-C------
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T------ 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~------ 225 (284)
..++.+||-+|||. |.++..+++.... +|+++|.|+..++.+++.- .+.+...-.++ .
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-------------a~~i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-------------FETIDLRNSAPLRDQIDQI 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-------------CEEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-------------CcEEcCCCcchHHHHHHHH
Confidence 56788999999986 8888888875444 7999999999999887531 11221111111 0
Q ss_pred CCCCceeEEEecchhccCC------hhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~------~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....||+|+-.-.-.... .......+..+.+.|+|||++++.-
T Consensus 250 ~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 250 LGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp HSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred hCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 0112699998654322100 0001146888899999999998753
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.15 Score=43.10 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=67.4
Q ss_pred CCceEEEeeccccHHHHHHHHh-------CC-CcEEEEe-----CCHH----------------------HHHH---HHH
Q 023288 157 QHLVALDCGSGIGRITKNLLIR-------YF-NEVDLLE-----PVSH----------------------FLDA---ARE 198 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-------~~-~~v~gvD-----~S~~----------------------~l~~---ar~ 198 (284)
-++.|+|+||-.|..+..++.- +. .+|+++| +.+. .++. ..+
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 4678999999999988876531 12 3899999 3221 1111 111
Q ss_pred HcCCCCCCCCCCCcceeEEEcCCCCCC------CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 199 SLAPENHMAPDMHKATNFFCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+....+. ...+++++.+++.+.- .+..+||+|+.-.-. + +.....+..+...|+|||++++-|
T Consensus 149 ~~~~~g~----~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-Y---~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 149 CSDFFGH----VTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-Y---EPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp TTSTTTT----SCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-H---HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred hhhhcCC----CCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-c---chHHHHHHHHHHHhCCCcEEEEcC
Confidence 1222111 1367999999886632 234579999976642 1 234468899999999999988855
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.029 Score=49.07 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=70.5
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEEec
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQ 237 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv~~ 237 (284)
++|+|+=||.|.++..+-..++.-+.++|+++...+.-+.++.. .++..|+.++... -..+|+++..
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~------------~~~~~DI~~i~~~~~~~~D~l~gg 68 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------------KLIKGDISKISSDEFPKCDGIIGG 68 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCS------------EEEESCGGGCCGGGSCCCSEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------------CcccCChhhCCHhhCCcccEEEec
Confidence 37999999999999998888888889999999999998888642 4667888876522 2368999965
Q ss_pred chhccC---------Chhh--HHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 238 WCIGHL---------TDDD--FVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 238 ~~l~~~---------~~~~--~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.....+ .++. +-.-+-++.+.++|. +++.||+.
T Consensus 69 pPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~ 112 (331)
T 3ubt_Y 69 PPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVK 112 (331)
T ss_dssp CCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECC
T ss_pred CCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeec
Confidence 433222 1111 222333455567884 77779975
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.046 Score=49.15 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=53.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhC------CC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY------FN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~------~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (284)
+.+..|+|+|.|.|.++..+++.. .. +++.||+|+...+.-++++... .++.+. .++.+++.
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--------~~v~W~-~~l~~lp~- 148 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--------RNIHWH-DSFEDVPE- 148 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--------SSEEEE-SSGGGSCC-
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--------CCeEEe-CChhhcCC-
Confidence 346789999999999999887531 11 7999999999998777776542 134433 23444431
Q ss_pred CCceeEEEecchhccCCh
Q 023288 228 TGRYDVIWVQWCIGHLTD 245 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~ 245 (284)
..-+|+++.+|..+|-
T Consensus 149 --~~~~viANE~fDAlPv 164 (387)
T 1zkd_A 149 --GPAVILANEYFDVLPI 164 (387)
T ss_dssp --SSEEEEEESSGGGSCC
T ss_pred --CCeEEEeccccccCce
Confidence 2457778888877773
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.066 Score=47.72 Aligned_cols=99 Identities=18% Similarity=0.030 Sum_probs=65.4
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC----CC-CCCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QD-FTPE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~----~~-~~~~ 227 (284)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.-... .+++...++ .+ ....
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~i~~~~~~~ 250 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA---------TVDPSAGDVVEAIAGPVGLV 250 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE---------EECTTSSCHHHHHHSTTSSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE---------EECCCCcCHHHHHHhhhhcc
Confidence 56788999999875 7788888776554 7999999999999988753220 011000111 00 0012
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+.+|+|+-+-.- . ..++.+.+.|+|||++++.-.
T Consensus 251 ~gg~Dvvid~~G~------~--~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 251 PGGVDVVIECAGV------A--ETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp TTCEEEEEECSCC------H--HHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCCEEEECCCC------H--HHHHHHHHHhccCCEEEEEec
Confidence 2479999964321 1 577888999999999998643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.033 Score=48.93 Aligned_cols=95 Identities=18% Similarity=0.069 Sum_probs=65.2
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 229 (284)
..++.+||-+|+|. |..+..+++....+|+++|.|++-++.+++.-.. ..+...-.++. -..+
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~i~~~~~~~~~~~~~~~g 231 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE------------VAVNARDTDPAAWLQKEIG 231 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHHS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC------------EEEeCCCcCHHHHHHHhCC
Confidence 56788999999985 8888888876555899999999999998775322 11111111110 0113
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+|+|+.... . . ..++.+.+.|+|||++++.-
T Consensus 232 ~~d~vid~~g----~--~--~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 232 GAHGVLVTAV----S--P--KAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp SEEEEEESSC----C--H--HHHHHHHHHEEEEEEEEECS
T ss_pred CCCEEEEeCC----C--H--HHHHHHHHHhccCCEEEEeC
Confidence 6898885432 1 1 57788889999999998863
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.018 Score=50.79 Aligned_cols=92 Identities=15% Similarity=0.027 Sum_probs=64.6
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..++.+||-+|+|. |..+..+++....+|+++|.|+.-++.+++.-.. . .+ .+...+ . ..+|+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-----------~-v~-~~~~~~--~-~~~D~ 237 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVK-----------H-FY-TDPKQC--K-EELDF 237 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCS-----------E-EE-SSGGGC--C-SCEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC-----------e-ec-CCHHHH--h-cCCCE
Confidence 56788999999975 8888888876555899999999999988774221 1 11 222222 1 27999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+-+-.- + ..+..+.+.|+|||++++.-.
T Consensus 238 vid~~g~-----~---~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 238 IISTIPT-----H---YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp EEECCCS-----C---CCHHHHHTTEEEEEEEEECCC
T ss_pred EEECCCc-----H---HHHHHHHHHHhcCCEEEEECC
Confidence 9854331 1 256778889999999998743
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.044 Score=47.94 Aligned_cols=92 Identities=9% Similarity=0.021 Sum_probs=62.3
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC---CC----
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FT---- 225 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~---~~---- 225 (284)
..++.+||-.|| |.|..+..++.....+|+++|.++..++.+++. .. .. . .|..+ +.
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~-g~----------~~-~--~d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI-GF----------DA-A--FNYKTVNSLEEALK 208 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TC----------SE-E--EETTSCSCHHHHHH
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-CC----------cE-E--EecCCHHHHHHHHH
Confidence 567889999998 677777777765555799999999998888443 21 01 1 12221 10
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+.+|+|+.+-. . ..+..+.+.|+|||++++.-
T Consensus 209 ~~~~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 209 KASPDGYDCYFDNVG-------G--EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp HHCTTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred HHhCCCCeEEEECCC-------h--HHHHHHHHHHhcCCEEEEEe
Confidence 01147999986554 1 34778889999999998864
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.13 Score=45.52 Aligned_cols=95 Identities=18% Similarity=0.118 Sum_probs=63.5
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC---CCCC----C
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDF----T 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d---~~~~----~ 225 (284)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.-.. ..+..+ -.++ .
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD------------LVLQISKESPQEIARKVE 236 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------------EEEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC------------EEEcCcccccchHHHHHH
Confidence 56788999999985 8888888876554 799999999999998764221 111111 0000 0
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....+|+|+-+-.- . ..+..+.+.|+|||++++.-
T Consensus 237 ~~~~~g~D~vid~~g~------~--~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 237 GQLGCKPEVTIECTGA------E--ASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp HHHTSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECS
T ss_pred HHhCCCCCEEEECCCC------h--HHHHHHHHHhcCCCEEEEEe
Confidence 001469999854331 1 46778889999999998864
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.1 Score=45.97 Aligned_cols=95 Identities=15% Similarity=-0.005 Sum_probs=63.3
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC-CCCCC------C
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d-~~~~~------~ 226 (284)
..++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.-.. ..+... -.++. .
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~~~~~~~~~~~~~i~~~~ 233 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------------VTLVVDPAKEEESSIIERI 233 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEECCTTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC------------EEEcCcccccHHHHHHHHh
Confidence 56788999999874 7778878776555699999999999998764221 111111 01110 0
Q ss_pred C---CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 E---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 ~---~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
. ...+|+|+-+-.- . ..++.+.+.|+|||++++.-
T Consensus 234 ~~~~g~g~D~vid~~g~------~--~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 234 RSAIGDLPNVTIDCSGN------E--KCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp HHHSSSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECS
T ss_pred ccccCCCCCEEEECCCC------H--HHHHHHHHHHhcCCEEEEEe
Confidence 0 1469999854331 1 46778889999999998864
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.055 Score=47.36 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=63.8
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (284)
..++.+||-+|| |.|..+..+++....+|++++.++.-++.+.+.+... ..+...-.++. ..
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~ 215 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFD-----------GAIDYKNEDLAAGLKREC 215 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCS-----------EEEETTTSCHHHHHHHHC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCC-----------EEEECCCHHHHHHHHHhc
Confidence 567889999998 5788888887765558999999999888884433210 11111111110 01
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+.+|+|+.+-. . ..+..+.+.|+|||++++.-
T Consensus 216 ~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 216 PKGIDVFFDNVG-------G--EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp TTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred CCCceEEEECCC-------c--chHHHHHHHHhhCCEEEEEe
Confidence 246999986443 1 36788889999999999863
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.12 Score=45.79 Aligned_cols=97 Identities=20% Similarity=0.046 Sum_probs=65.6
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC--CCCC-----
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL--QDFT----- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~--~~~~----- 225 (284)
..++.+||=+|+|. |..+..+++.... .|+++|.|+.-++.+++. ... .+.+...+. .++.
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~---------~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE---------VVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT---------CEEEECCSCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh---------cccccccccchHHHHHHHHH
Confidence 56788999999875 7888888876554 599999999999999987 321 122221110 0000
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....+|+|+-+-.- . ..+..+.+.|+|||++++.-
T Consensus 247 ~t~g~g~Dvvid~~g~------~--~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 247 SFGGIEPAVALECTGV------E--SSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp HTSSCCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECC
T ss_pred HhCCCCCCEEEECCCC------h--HHHHHHHHHhcCCCEEEEEc
Confidence 112479999864331 1 46788889999999999864
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.033 Score=49.50 Aligned_cols=96 Identities=14% Similarity=-0.059 Sum_probs=65.4
Q ss_pred cCCCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 154 RNNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 154 ~~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
...++.+||-+|+|. |..+..+++....+|+++|.++.-++.+++.-.. ..+..+-.++. .
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~v~~~~ 253 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD------------HGINRLEEDWVERVYALT 253 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC------------EEEcCCcccHHHHHHHHh
Confidence 366788999999885 7788878876555899999999999998775322 11211111110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+|+|+-+-. . ..+..+.+.|+|||.+++.-.
T Consensus 254 ~g~g~D~vid~~g----~-----~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 254 GDRGADHILEIAG----G-----AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp TTCCEEEEEEETT----S-----SCHHHHHHHEEEEEEEEEECC
T ss_pred CCCCceEEEECCC----h-----HHHHHHHHHhhcCCEEEEEec
Confidence 1237999986543 1 246677789999999998754
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.066 Score=47.00 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=63.9
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCC-----C
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFT-----P 226 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~-----~ 226 (284)
..++.+||-.|| |.|..+..++.....+|++++.++..++.+++.+... ..+. .+..++. .
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~-----------~~~d~~~~~~~~~~~~~~ 221 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFD-----------DAFNYKEESDLTAALKRC 221 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCS-----------EEEETTSCSCSHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCc-----------eEEecCCHHHHHHHHHHH
Confidence 567889999997 5788888777755557999999999988887543210 1111 1111110 0
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
..+.+|+|+.+-. . ..+..+.+.|+|||++++.-
T Consensus 222 ~~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 222 FPNGIDIYFENVG-------G--KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp CTTCEEEEEESSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred hCCCCcEEEECCC-------H--HHHHHHHHHHhcCCEEEEEc
Confidence 1246999986543 2 36788889999999998863
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.064 Score=47.31 Aligned_cols=96 Identities=16% Similarity=-0.009 Sum_probs=64.9
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.-.. .++...-.++. .
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT------------DIINYKNGDIVEQILKAT 231 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC------------EEECGGGSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc------------eEEcCCCcCHHHHHHHHc
Confidence 56788999999885 7888888876554 799999999999999876332 11111101110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+|+|+-+-.- . ..+..+.+.|+|||++++.-.
T Consensus 232 ~g~g~D~v~d~~g~------~--~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 232 DGKGVDKVVIAGGD------V--HTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp TTCCEEEEEECSSC------T--THHHHHHHHEEEEEEEEECCC
T ss_pred CCCCCCEEEECCCC------h--HHHHHHHHHHhcCCEEEEecc
Confidence 12369999854321 1 467888899999999988643
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.05 Score=47.29 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=59.7
Q ss_pred CCCceEEEeeccccHHHHHHH----HhCCC---cEEEEeCC------------HHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLL----IRYFN---EVDLLEPV------------SHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~----~~~~~---~v~gvD~S------------~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
.+..+|||+|-|||......+ +.... +++.+|.. ....+......... .......++
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~----~~~~v~L~l 170 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY----EGERLSLKV 170 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE----ECSSEEEEE
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc----cCCcEEEEE
Confidence 355789999999998654322 22332 45666632 11122222221110 000234566
Q ss_pred EEcCCCCC-C-CCCCceeEEEecch-hccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 217 FCVPLQDF-T-PETGRYDVIWVQWC-IGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 217 ~~~d~~~~-~-~~~~~fD~Iv~~~~-l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
..+|+.+. + ++...||+|+.-.. -..-|+-=-..+++.++++++|||+|+-
T Consensus 171 ~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 171 LLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp EESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred EechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 77777543 2 33457999997542 1111110124799999999999998874
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.12 Score=46.37 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=65.5
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CC------
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT------ 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~------ 225 (284)
..++.+||-+|||. |.++..+++.... .|+++|.++.-++.+++.-. +.+...-.+ +.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa-------------~~i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-------------EIADLSLDTPLHEQIAAL 249 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------------EEEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCC-------------cEEccCCcchHHHHHHHH
Confidence 56788999999875 8888888876544 79999999999999976421 111111001 00
Q ss_pred CCCCceeEEEecchhc---------cCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 PETGRYDVIWVQWCIG---------HLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~---------~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....+|+|+-+-.-. |.+ +....++.+.+.|++||++++.-
T Consensus 250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 250 LGEPEVDCAVDAVGFEARGHGHEGAKHE--APATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSB--CTTHHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCCCEEEECCCCccccccccccccc--chHHHHHHHHHHHhcCCEEEEec
Confidence 0123699999543321 111 12257888999999999998764
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.069 Score=46.89 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=61.9
Q ss_pred CCCCceEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||-+||| .|..+..+++....+|+++|.++.-++.+++.-.. ..+...-.++. .
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~------------~~~~~~~~~~~~~~~~~~ 209 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAA------------YVIDTSTAPLYETVMELT 209 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCc------------EEEeCCcccHHHHHHHHh
Confidence 6678899999987 67777777765445799999999999988875321 11111111110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+|+|+.+-.- ..+....+.|+|||.+++.-.
T Consensus 210 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 210 NGIGADAAIDSIGG---------PDGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp TTSCEEEEEESSCH---------HHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCCcEEEECCCC---------hhHHHHHHHhcCCCEEEEEee
Confidence 12479999865431 122334489999999998743
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.14 Score=44.70 Aligned_cols=95 Identities=20% Similarity=0.123 Sum_probs=64.0
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||-+|+ |.|..+..+++....+|++++.++.-++.+++.-.. ..+...-.++. .
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~~~~~~~~~~~~~~~~~~ 213 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAE------------YLINASKEDILRQVLKFT 213 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc------------EEEeCCCchHHHHHHHHh
Confidence 567889999994 577888878776555899999999999988764211 11111111110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+|+|+.+-.- ..+..+.+.|+|||++++.-.
T Consensus 214 ~~~g~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 214 NGKGVDASFDSVGK---------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp TTSCEEEEEECCGG---------GGHHHHHHHEEEEEEEEECCC
T ss_pred CCCCceEEEECCCh---------HHHHHHHHHhccCCEEEEEcC
Confidence 12469999865441 356777889999999998643
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.34 Score=43.55 Aligned_cols=100 Identities=12% Similarity=-0.053 Sum_probs=60.9
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||=+|+|. |..+..+++.... +|+++|.++.-++.+++.-.. ..+...-.++. .
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~i~~~t 278 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD------------HVIDPTKENFVEAVLDYT 278 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS------------EEECTTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC------------EEEcCCCCCHHHHHHHHh
Confidence 56788999999874 7777777766554 899999999999999876322 11111111110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
....+|+|+-+-.-. ......+++.+.+.+++||++++.-
T Consensus 279 ~g~g~D~vid~~g~~---~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 279 NGLGAKLFLEATGVP---QLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp TTCCCSEEEECSSCH---HHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCCCCCEEEECCCCc---HHHHHHHHHHHHhccCCCcEEEEeC
Confidence 123699998543311 0011233333345559999999864
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.023 Score=50.68 Aligned_cols=95 Identities=16% Similarity=0.023 Sum_probs=62.7
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC-CCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD 232 (284)
..++.+||-+|+|. |..+..+++....+|+++|.|+.-++.+++.-.. .-++....+ +.... +.+|
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~---------~vi~~~~~~~~~~~~---~g~D 259 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD---------EVVNSRNADEMAAHL---KSFD 259 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS---------EEEETTCHHHHHTTT---TCEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc---------EEeccccHHHHHHhh---cCCC
Confidence 56788999999984 7888888876555799999999999998864221 001100001 11111 4799
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+-.-.- + ..++.+.+.|+|||.+++.-
T Consensus 260 vvid~~g~-----~---~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 260 FILNTVAA-----P---HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp EEEECCSS-----C---CCHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCC-----H---HHHHHHHHHhccCCEEEEec
Confidence 99854431 1 24567788999999988763
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.17 Score=44.65 Aligned_cols=92 Identities=13% Similarity=0.063 Sum_probs=62.0
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+||-.|+ |.|..+..+++....+|++++.++..++.+++.-.. ..+ |..+..
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~~~--d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH------------EVF--NHREVNYIDKIKK 233 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEE--ETTSTTHHHHHHH
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCC------------EEE--eCCCchHHHHHHH
Confidence 567889999997 577777777766555799999999988877654211 111 211111
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....+|+|+.+-. . ..+..+.+.|+|||++++.-
T Consensus 234 ~~~~~~~D~vi~~~G-------~--~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 YVGEKGIDIIIEMLA-------N--VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHCTTCEEEEEESCH-------H--HHHHHHHHHEEEEEEEEECC
T ss_pred HcCCCCcEEEEECCC-------h--HHHHHHHHhccCCCEEEEEe
Confidence 11236999986644 1 34667789999999998764
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.14 Score=44.54 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=63.9
Q ss_pred CCCCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||-+| .|.|..+..+++....+|++++.+++-++.+++.-.. ..+...-.++. .
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~~~~~~ 205 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAW------------ETIDYSHEDVAKRVLELT 205 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC------------EEEeCCCccHHHHHHHHh
Confidence 56788999998 3578888877775445799999999999998865321 11111111110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+|+|+.+-. . ..+..+.+.|+|||++++.-.
T Consensus 206 ~~~g~Dvvid~~g-------~--~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 206 DGKKCPVVYDGVG-------Q--DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp TTCCEEEEEESSC-------G--GGHHHHHTTEEEEEEEEECCC
T ss_pred CCCCceEEEECCC-------h--HHHHHHHHHhcCCCEEEEEec
Confidence 2247999986543 1 356678889999999998743
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.093 Score=46.12 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=63.8
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||-+|+ |.|..+..+++....+|++++.++.-++.+++.-.. ..+..+ .++. .
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~------------~v~~~~-~~~~~~v~~~~ 223 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGAD------------IVLPLE-EGWAKAVREAT 223 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS------------EEEESS-TTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc------------EEecCc-hhHHHHHHHHh
Confidence 567889999997 578888888876555899999999999988875321 112222 2211 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
....+|+|+.+-.- ..+..+.+.|+|||.+++.-
T Consensus 224 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 224 GGAGVDMVVDPIGG---------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TTSCEEEEEESCC-----------CHHHHHHTEEEEEEEEEC-
T ss_pred CCCCceEEEECCch---------hHHHHHHHhhcCCCEEEEEE
Confidence 12369999865431 24677888999999999864
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.14 Score=44.86 Aligned_cols=93 Identities=18% Similarity=0.076 Sum_probs=62.6
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC------
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------ 227 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------ 227 (284)
..++.+||-+|+| .|..+..+++....+|+++|.++.-++.+++.-.. .. .|..+..+.
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~--~d~~~~~~~~~~~~~ 227 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD------------LV--VNPLKEDAAKFMKEK 227 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS------------EE--ECTTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCC------------EE--ecCCCccHHHHHHHH
Confidence 4577899999986 57777777766555899999999999988753211 11 122211100
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+.+|+|+.+-.. ...++.+.+.|++||++++.-
T Consensus 228 ~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 228 VGGVHAAVVTAVS--------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp HSSEEEEEESSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred hCCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEec
Confidence 0369999865431 146778889999999998763
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.099 Score=45.99 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=62.8
Q ss_pred CCCCceEEEeecc--ccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-----CC
Q 023288 155 NNQHLVALDCGSG--IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TP 226 (284)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~ 226 (284)
..++.+||-.|+| .|..+..+++.. ..+|+++|.++..++.+++.-.. ..+...-.+. ..
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~ 235 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD------------YVINASMQDPLAEIRRI 235 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC------------EEecCCCccHHHHHHHH
Confidence 5678899999998 666666676654 44799999999999988764211 1111110111 01
Q ss_pred CC-CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~-~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.. +.+|+|+.+-.- . ..++.+.+.|+|+|.+++.-.
T Consensus 236 ~~~~~~d~vi~~~g~------~--~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 236 TESKGVDAVIDLNNS------E--KTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp TTTSCEEEEEESCCC------H--HHHTTGGGGEEEEEEEEECCS
T ss_pred hcCCCceEEEECCCC------H--HHHHHHHHHHhcCCEEEEECC
Confidence 11 479999865431 1 467888899999999988643
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.016 Score=51.13 Aligned_cols=95 Identities=15% Similarity=-0.033 Sum_probs=62.3
Q ss_pred CCceEEEeeccc-cHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCC-CCCCCCCCce
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPL-QDFTPETGRY 231 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~-~~~~~~~~~f 231 (284)
++.+||-+|+|. |..+..+++.. ..+|+++|.|+.-++.+++.-.. .-++... .+. ..+. ....+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------~vi~~~~~~~~~~~~~-~g~g~ 239 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD---------YVSEMKDAESLINKLT-DGLGA 239 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS---------EEECHHHHHHHHHHHH-TTCCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC---------EEeccccchHHHHHhh-cCCCc
Confidence 678999999974 77777777655 44799999999999999875321 0011100 110 0111 12379
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|+-+-.- . ..++.+.+.|+|||++++.-
T Consensus 240 D~vid~~g~------~--~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 240 SIAIDLVGT------E--ETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp EEEEESSCC------H--HHHHHHHHHEEEEEEEEECC
T ss_pred cEEEECCCC------h--HHHHHHHHHhhcCCEEEEeC
Confidence 999865431 1 46788889999999998864
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.082 Score=47.92 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=40.5
Q ss_pred CCCCceEEEeeccccHHHHHHH-HhCC--CcEEEEeCCHHHHHHHHHHcCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLL-IRYF--NEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~-~~~~--~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
..++..++|+||+.|..+..++ .... .+|+++|++|...+..+++...
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4678899999999999999877 3443 4899999999999999988754
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.17 Score=44.33 Aligned_cols=93 Identities=11% Similarity=-0.024 Sum_probs=63.8
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+||-+|+ |.|..+..+++....+|++++.++..++.+++.-.. ..+ |..+..
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~------------~~~--d~~~~~~~~~~~~ 229 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGAD------------ETV--NYTHPDWPKEVRR 229 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS------------EEE--ETTSTTHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC------------EEE--cCCcccHHHHHHH
Confidence 567889999998 678888888876555799999999999988764211 111 221111
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.....+|+|+.+-. . ..++.+.+.|+++|++++.-.
T Consensus 230 ~~~~~~~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 230 LTGGKGADKVVDHTG-A--------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp HTTTTCEEEEEESSC-S--------SSHHHHHHHEEEEEEEEESSC
T ss_pred HhCCCCceEEEECCC-H--------HHHHHHHHhhccCCEEEEEec
Confidence 11247999986554 1 246677888999999988643
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.088 Score=45.74 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=61.6
Q ss_pred eEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEEEe
Q 023288 160 VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIWV 236 (284)
Q Consensus 160 ~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~Iv~ 236 (284)
+||=+|+ |.|..+..+++....+|++++.|++-++.+++.-.. .-++ ..+.... ....+.+|+|+-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~---------~vi~--~~~~~~~~~~~~~~~d~v~d 217 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGAN---------RILS--RDEFAESRPLEKQLWAGAID 217 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCS---------EEEE--GGGSSCCCSSCCCCEEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC---------EEEe--cCCHHHHHhhcCCCccEEEE
Confidence 4999997 578888888876555899999999999999875322 0011 1111111 122357999875
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+-. . ..+..+.+.|+|+|++++.-.
T Consensus 218 ~~g-------~--~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 218 TVG-------D--KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp SSC-------H--HHHHHHHHTEEEEEEEEECCC
T ss_pred CCC-------c--HHHHHHHHHHhcCCEEEEEec
Confidence 432 2 378889999999999998643
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.084 Score=46.39 Aligned_cols=95 Identities=15% Similarity=-0.001 Sum_probs=65.1
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||-+|+|. |..+..+++.. ..+|+++|.+++-++.+++.-.. .++..+ .++. .
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~------------~~i~~~-~~~~~~v~~~t 235 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD------------AAVKSG-AGAADAIRELT 235 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS------------EEEECS-TTHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC------------EEEcCC-CcHHHHHHHHh
Confidence 56788999999975 88888888654 56899999999999999875322 111111 1110 0
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+|+|+-+-.- . ..++.+.+.|+|||++++.-.
T Consensus 236 ~g~g~d~v~d~~G~------~--~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 236 GGQGATAVFDFVGA------Q--STIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp GGGCEEEEEESSCC------H--HHHHHHHHHEEEEEEEEECSC
T ss_pred CCCCCeEEEECCCC------H--HHHHHHHHHHhcCCEEEEECC
Confidence 11269999864331 1 478889999999999998743
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.063 Score=46.56 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=59.8
Q ss_pred cCCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 154 RNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 154 ~~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
...++.+||=+|+| .|..+..+++....+|++++ |++-++.+++.-.. ..+ .|...+ ...+|
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~------------~v~-~d~~~v---~~g~D 201 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVR------------HLY-REPSQV---TQKYF 201 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEE------------EEE-SSGGGC---CSCEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCC------------EEE-cCHHHh---CCCcc
Confidence 36788999999996 47888888775444899999 99999998775221 111 132222 36799
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+-+-.- ..+..+.+.|+|||++++.
T Consensus 202 vv~d~~g~---------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 202 AIFDAVNS---------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp EEECC----------------TTGGGEEEEEEEEEE
T ss_pred EEEECCCc---------hhHHHHHHHhcCCCEEEEE
Confidence 99854331 1235678899999999887
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.33 Score=42.59 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=62.2
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------CCC
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 228 (284)
++.+||-+|+| .|..+..+++.... +|+++|.++.-++.+++.-.. ..+...-.++. ...
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~v~~~~~g 234 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD------------YVINPFEEDVVKEVMDITDG 234 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS------------EEECTTTSCHHHHHHHHTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC------------EEECCCCcCHHHHHHHHcCC
Confidence 78899999996 37777777765544 799999999999988764321 01111111110 112
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
..+|+|+.+-.. ...++.+.+.|+++|++++.-.
T Consensus 235 ~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 235 NGVDVFLEFSGA--------PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp SCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEcc
Confidence 369999865431 1467788899999999988643
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.27 Score=42.66 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=62.3
Q ss_pred CCCCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+||-.| +|.|..+..++.....+|+++|.++..++.+++.-.. ..+ |..+..
T Consensus 138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~------------~~~--~~~~~~~~~~~~~ 203 (327)
T 1qor_A 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW------------QVI--NYREEDLVERLKE 203 (327)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EEE--ETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC------------EEE--ECCCccHHHHHHH
Confidence 56788999999 4677777777765444799999999988888764211 111 211111
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.....+|+|+.+-. . ..++.+.+.|++||++++.-.
T Consensus 204 ~~~~~~~D~vi~~~g----~-----~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 204 ITGGKKVRVVYDSVG----R-----DTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp HTTTCCEEEEEECSC----G-----GGHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCceEEEECCc----h-----HHHHHHHHHhcCCCEEEEEec
Confidence 11236999986643 1 356778889999999988643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.17 Score=44.96 Aligned_cols=96 Identities=15% Similarity=-0.002 Sum_probs=63.5
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CC-CCCC-----
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT----- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~-~~~~----- 225 (284)
..++.+||-+|+|. |..+..+++.... +|+++|.|+.-++.+++.-.. ..+.. +. .++.
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~~~ 257 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT------------DFVNPNDHSEPISQVLSK 257 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc------------eEEeccccchhHHHHHHH
Confidence 56788999999874 7778878776554 799999999999988754221 11111 10 0110
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e~ 270 (284)
...+.+|+|+-+-.- ...+..+.+.|+|| |++++.-.
T Consensus 258 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 258 MTNGGVDFSLECVGN--------VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp HHTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HhCCCCCEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEcC
Confidence 011369999854321 14678889999999 99988643
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.24 Score=43.69 Aligned_cols=95 Identities=17% Similarity=0.038 Sum_probs=61.9
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||-.|+ |.|..+..++.....+|+++|.++..++.+++.-.. ..+..+-.++. .
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAA------------AGFNYKKEDFSEATLKFT 227 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCc------------EEEecCChHHHHHHHHHh
Confidence 567889999984 677777777766555799999999999988654211 01111111100 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+|+|+.+-.- ..+..+.+.|++||.+++.-.
T Consensus 228 ~~~~~d~vi~~~G~---------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 228 KGAGVNLILDCIGG---------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp TTSCEEEEEESSCG---------GGHHHHHHHEEEEEEEEECCC
T ss_pred cCCCceEEEECCCc---------hHHHHHHHhccCCCEEEEEec
Confidence 12369999865431 245667788999999988643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.15 Score=44.65 Aligned_cols=59 Identities=8% Similarity=-0.009 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCC
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~ 203 (284)
..++..++... ..++..|||.-||+|..+.... ....+.+|+|+++...+.+++++...
T Consensus 239 ~~l~~~~i~~~-----~~~~~~VlDpF~GsGtt~~aa~-~~gr~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 239 AKLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp THHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence 34555555432 3477899999999999998665 44457999999999999999998764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.19 Score=44.81 Aligned_cols=96 Identities=15% Similarity=0.029 Sum_probs=63.9
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC--CCCCC-----
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP--LQDFT----- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d--~~~~~----- 225 (284)
..++.+||-+|+| .|.++..+++.. ..+|+++|.++.-++.+++.-.. ..+... -.++.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~i~~ 258 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN------------EFVNPKDHDKPIQEVIVD 258 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc------------EEEccccCchhHHHHHHH
Confidence 5678899999997 477888777654 43799999999999988764221 111111 01110
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e~ 270 (284)
...+.+|+|+-+-. . ...+..+.+.|+|| |++++.-.
T Consensus 259 ~~~gg~D~vid~~g-----~---~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 259 LTDGGVDYSFECIG-----N---VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp HTTSCBSEEEECSC-----C---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred hcCCCCCEEEECCC-----C---HHHHHHHHHHhhccCCEEEEEcc
Confidence 11247999985433 1 15788899999997 99988643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.37 Score=42.62 Aligned_cols=93 Identities=13% Similarity=0.036 Sum_probs=62.6
Q ss_pred CCceEEEee-cc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEE---EcCCCCCCCCCCc
Q 023288 157 QHLVALDCG-SG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF---CVPLQDFTPETGR 230 (284)
Q Consensus 157 ~~~~VLDiG-cG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~ 230 (284)
++.+||=+| +| .|..+..+++. +..+|+++|.+++-++.+++.-... -++.. ...+.+ ...+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~---------vi~~~~~~~~~v~~--~~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHH---------VIDHSKPLAAEVAA--LGLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSE---------EECTTSCHHHHHHT--TCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCE---------EEeCCCCHHHHHHH--hcCCC
Confidence 677899998 44 68888888876 4668999999999999987642210 00000 000111 12357
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+|+-+-. -...+..+.+.|+|||++++.
T Consensus 240 ~Dvvid~~g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 240 PAFVFSTTH--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEECSC--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred ceEEEECCC--------chhhHHHHHHHhcCCCEEEEE
Confidence 999986432 115778889999999999987
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.095 Score=46.12 Aligned_cols=94 Identities=12% Similarity=-0.006 Sum_probs=63.4
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCC---CCC----
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---DFT---- 225 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~---~~~---- 225 (284)
..++.+||-+|+ |.|..+..++.....+|+++|.++..++.+++.-.. .. .|.. ++.
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~------------~~--~d~~~~~~~~~~~~ 232 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGE------------VF--IDFTKEKDIVGAVL 232 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCC------------EE--EETTTCSCHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCc------------eE--EecCccHhHHHHHH
Confidence 567889999998 578887777765545799999998888887753111 11 1222 110
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
...+.+|+|+.+... ...++.+.+.|++||++++.-.
T Consensus 233 ~~~~~~~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 233 KATDGGAHGVINVSVS--------EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HHHTSCEEEEEECSSC--------HHHHHHHTTSEEEEEEEEECCC
T ss_pred HHhCCCCCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEeC
Confidence 001269999865431 1477888999999999987643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.23 Score=44.06 Aligned_cols=95 Identities=15% Similarity=-0.019 Sum_probs=63.0
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CC-CCCC-----
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT----- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~-~~~~----- 225 (284)
..++.+||-+|+|. |..+..+++.... +|+++|.|+.-++.+++.-.. ..+.. +. .++.
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~v~~ 255 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT------------ECINPQDFSKPIQEVLIE 255 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc------------eEeccccccccHHHHHHH
Confidence 56788999999874 7777777765444 799999999999998865321 01111 10 0110
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e 269 (284)
...+.+|+|+-+-.- ...++.+.+.|+|+ |++++.-
T Consensus 256 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 256 MTDGGVDYSFECIGN--------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HhCCCCCEEEECCCc--------HHHHHHHHHhhccCCcEEEEEe
Confidence 112379999854321 14678889999999 9998864
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.65 Score=34.89 Aligned_cols=93 Identities=12% Similarity=-0.028 Sum_probs=56.9
Q ss_pred CceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 158 HLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 158 ~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
..+|+=+|||. |......+.....+|+++|.+++.++.+++. .+.++.+|..+.. ..-..+|
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~-------------g~~~i~gd~~~~~~l~~a~i~~ad 73 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER-------------GVRAVLGNAANEEIMQLAHLECAK 73 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-------------TCEEEESCTTSHHHHHHTTGGGCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc-------------CCCEEECCCCCHHHHHhcCcccCC
Confidence 35788899874 4433333333333699999999999888752 1456777776532 1224688
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++...- +.....+-...+.+.|+..++..
T Consensus 74 ~vi~~~~~-----~~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 74 WLILTIPN-----GYEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp EEEECCSC-----HHHHHHHHHHHHHHCSSSEEEEE
T ss_pred EEEEECCC-----hHHHHHHHHHHHHHCCCCeEEEE
Confidence 88865431 12223344456677888877664
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.44 Score=42.26 Aligned_cols=95 Identities=13% Similarity=-0.061 Sum_probs=62.9
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CC-CCCC-----
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT----- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~-~~~~----- 225 (284)
..++.+||-+|+| .|..+..+++.... +|+++|.|+.-++.+++.-.. ..+.. +. .++.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~v~~ 260 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT------------DCLNPRELDKPVQDVITE 260 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc------------EEEccccccchHHHHHHH
Confidence 5678899999987 47778878776554 799999999999988764221 01111 10 0110
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e 269 (284)
...+.+|+|+-+-.- ...+..+.+.|++| |++++.-
T Consensus 261 ~~~~g~Dvvid~~G~--------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 261 LTAGGVDYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HHTSCBSEEEESSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HhCCCccEEEECCCC--------HHHHHHHHHHhhcCCCEEEEEC
Confidence 011369999854321 15678889999999 9998753
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.49 E-value=0.32 Score=43.10 Aligned_cols=95 Identities=13% Similarity=-0.056 Sum_probs=62.8
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CC-CCCC-----
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT----- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~-~~~~----- 225 (284)
..++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++.-.. ..+.. +. .++.
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~~~ 256 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT------------ECVNPQDYKKPIQEVLTE 256 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc------------eEecccccchhHHHHHHH
Confidence 56788999999875 7777777776554 799999999999988754221 01111 10 0110
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e 269 (284)
...+.+|+|+-+-.- ...+..+.+.|++| |++++.-
T Consensus 257 ~~~~g~D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 257 MSNGGVDFSFEVIGR--------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HTTSCBSEEEECSCC--------HHHHHHHHHHBCTTTCEEEECS
T ss_pred HhCCCCcEEEECCCC--------HHHHHHHHHHhhcCCcEEEEec
Confidence 112379999854321 14678888999999 9998764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.29 Score=43.37 Aligned_cols=95 Identities=13% Similarity=-0.109 Sum_probs=62.8
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CC-CCCC-----
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QDFT----- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~-~~~~----- 225 (284)
..++.+||-+|+|. |..+..+++.... +|+++|.|+.-++.+++.-.. ..+.. +. .++.
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~i~~ 256 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT------------ECLNPKDYDKPIYEVICE 256 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc------------EEEecccccchHHHHHHH
Confidence 56788999999874 7777777765443 799999999999988764221 11111 10 1110
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e 269 (284)
...+.+|+|+-.-.- ...+..+.+.|+|| |++++.-
T Consensus 257 ~t~gg~Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 257 KTNGGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp HTTSCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HhCCCCCEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEc
Confidence 112479999854321 14678889999999 9998764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.26 Score=43.65 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=63.7
Q ss_pred CCCCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023288 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (284)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (284)
..++.+||-+| .|.|..+..+++....+|++++.+++.++.+++.-.. ..+..+-.++. ..
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~~~~~~ 228 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCD------------RPINYKTEPVGTVLKQEY 228 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCc------------EEEecCChhHHHHHHHhc
Confidence 56788999999 5678888888876555799999999999888763211 11111111110 01
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+|+|+.+-. . ..++.+.+.|+++|++++.-
T Consensus 229 ~~g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 229 PEGVDVVYESVG-------G--AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp TTCEEEEEECSC-------T--HHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECCC-------H--HHHHHHHHHHhcCCEEEEEe
Confidence 246999986543 1 46778889999999998864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.043 Score=47.41 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=40.0
Q ss_pred ceeEEEcCCCCC-C-CCCCceeEEEecchhccCCh--------------h----hHHHHHHHHHhcCCCCcEEEEE
Q 023288 213 ATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTD--------------D----DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 213 ~~~~~~~d~~~~-~-~~~~~fD~Iv~~~~l~~~~~--------------~----~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.++++++|..+. . +++++||+|+++-......+ + .+..+++++.++|||||.+++.
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 467889988763 2 45679999999866532210 1 1356788999999999999875
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.29 Score=43.03 Aligned_cols=93 Identities=8% Similarity=-0.054 Sum_probs=62.5
Q ss_pred CCCC--ceEEEeec--cccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----
Q 023288 155 NNQH--LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (284)
Q Consensus 155 ~~~~--~~VLDiGc--GtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 225 (284)
..++ .+||-.|+ |.|..+..++..... +|+++|.++.-++.+++.+... .. .|..+..
T Consensus 156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~-----------~~--~d~~~~~~~~~ 222 (357)
T 2zb4_A 156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD-----------AA--INYKKDNVAEQ 222 (357)
T ss_dssp CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS-----------EE--EETTTSCHHHH
T ss_pred CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-----------eE--EecCchHHHHH
Confidence 4567 89999997 567777777765555 7999999998888887644210 11 1221111
Q ss_pred ---CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 ---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 ---~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+.+|+|+.+-. . ..++.+.+.|++||++++.-
T Consensus 223 ~~~~~~~~~d~vi~~~G-------~--~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 223 LRESCPAGVDVYFDNVG-------G--NISDTVISQMNENSHIILCG 260 (357)
T ss_dssp HHHHCTTCEEEEEESCC-------H--HHHHHHHHTEEEEEEEEECC
T ss_pred HHHhcCCCCCEEEECCC-------H--HHHHHHHHHhccCcEEEEEC
Confidence 01126999986544 1 46788889999999998863
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.31 Score=42.43 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=62.8
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+||-.|+ |.|..+..++.....+|+++|.+++.++.+++.-.. ..+ |..+..
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~------------~~~--d~~~~~~~~~i~~ 208 (333)
T 1wly_A 143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCH------------HTI--NYSTQDFAEVVRE 208 (333)
T ss_dssp CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS------------EEE--ETTTSCHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC------------EEE--ECCCHHHHHHHHH
Confidence 567889999995 678887777766555799999999888888764211 011 221111
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.....+|+|+.+-. . ..++.+.+.|+|||++++.-.
T Consensus 209 ~~~~~~~d~vi~~~g-------~--~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 209 ITGGKGVDVVYDSIG-------K--DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp HHTTCCEEEEEECSC-------T--TTHHHHHHTEEEEEEEEECCC
T ss_pred HhCCCCCeEEEECCc-------H--HHHHHHHHhhccCCEEEEEec
Confidence 11236999986543 1 356778889999999988643
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.22 Score=50.16 Aligned_cols=104 Identities=17% Similarity=0.104 Sum_probs=68.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC------------C
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL------------Q 222 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~------------~ 222 (284)
....+++|+=||.|.++..+...++ ..+.++|+++..++.-+.++.. ..++..|+ .
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~-----------~~~~~~DI~~l~~~~~~~di~ 606 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPG-----------STVFTEDCNILLKLVMAGETT 606 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTT-----------SEEECSCHHHHHHHHHHTCSB
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC-----------CccccccHHHHhhhccchhhh
Confidence 4567999999999999999988887 5688999999999998888754 22333332 2
Q ss_pred CCC---C-CCCceeEEEecchhccCChh---------h----HHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 223 DFT---P-ETGRYDVIWVQWCIGHLTDD---------D----FVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 223 ~~~---~-~~~~fD~Iv~~~~l~~~~~~---------~----~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
+.. + ..+.+|+|+.......++.. + +-..+-++.+.++| .+++.||+.
T Consensus 607 ~~~~~~lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rP--k~~llENV~ 671 (1002)
T 3swr_A 607 NSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRP--RFFLLENVR 671 (1002)
T ss_dssp CTTCCBCCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCC--SEEEEEEEG
T ss_pred hhhhhhcccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCC--CEEEEeccH
Confidence 111 1 23579999966543333211 1 11223345556677 477789975
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.21 Score=44.09 Aligned_cols=96 Identities=20% Similarity=0.136 Sum_probs=63.7
Q ss_pred cCCCCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C
Q 023288 154 RNNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P 226 (284)
Q Consensus 154 ~~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 226 (284)
...++.+||-+| .|.|..+..+++....+|+++|.++.-++.+++.-.. ..+...-.++. .
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~~~~~~~~~~~~~~~~~ 231 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAK------------RGINYRSEDFAAVIKAE 231 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC------------EEEeCCchHHHHHHHHH
Confidence 356788999995 3468888888876555799999999999998875321 11111111110 0
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
..+.+|+|+.+-.- ..+..+.+.|+|||.+++.-.
T Consensus 232 ~~~g~Dvvid~~g~---------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 232 TGQGVDIILDMIGA---------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp HSSCEEEEEESCCG---------GGHHHHHHTEEEEEEEEECCC
T ss_pred hCCCceEEEECCCH---------HHHHHHHHHhccCCEEEEEEe
Confidence 02469999865431 256677889999999988643
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.81 E-value=0.46 Score=43.42 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=64.4
Q ss_pred cCCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023288 154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (284)
Q Consensus 154 ~~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (284)
...++.+||=+|+ |.|.++..+++....++++++.++.-++.+++.-.. .++...-.++.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~d~~~~~~~~ 292 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE------------AIIDRNAEGYRFWKDEN 292 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC------------EEEETTTTTCCSEEETT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc------------EEEecCcCccccccccc
Confidence 3567889999997 478888888876666799999999999999775322 01111111100
Q ss_pred -----------------CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 -----------------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 -----------------~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....+|+|+-+-. . ..+..+.+.|+|||.+++.-
T Consensus 293 ~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~--~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 293 TQDPKEWKRFGKRIRELTGGEDIDIVFEHPG-------R--ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp EECHHHHHHHHHHHHHHHTSCCEEEEEECSC-------H--HHHHHHHHHEEEEEEEEESC
T ss_pred ccchHHHHHHHHHHHHHhCCCCCcEEEEcCC-------c--hhHHHHHHHhhCCcEEEEEe
Confidence 01247999985433 2 46778888999999998863
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.11 Score=45.51 Aligned_cols=90 Identities=17% Similarity=0.076 Sum_probs=60.0
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------CC
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------PE 227 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~ 227 (284)
++.+||-+|+|. |..+..+++.... +|+++|.++.-++.+++. .. .. .|..+.. ..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~------------~v--~~~~~~~~~~~~~~~~ 228 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD------------RL--VNPLEEDLLEVVRRVT 228 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS------------EE--ECTTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH------------hc--cCcCccCHHHHHHHhc
Confidence 788999999863 7777777776554 799999999888777654 21 01 1111100 00
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+|+|+.+-.- ...++.+.+.|+|+|++++.-
T Consensus 229 ~~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 229 GSGVEVLLEFSGN--------EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp SSCEEEEEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 2369999855431 146778889999999988763
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.69 E-value=0.24 Score=43.22 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCH---HHHHHHHHHcCCC
Q 023288 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAPE 203 (284)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~---~~l~~ar~~~~~~ 203 (284)
-+..++..++... ..++..|||.=||+|..+......+ .+.+|+|+++ ..++.+++++...
T Consensus 227 kp~~l~~~~i~~~-----~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 227 KPAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp CCHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHh-----CCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHHc
Confidence 3455666655433 3477899999999999999766554 4699999999 9999999998653
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=0.12 Score=44.90 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=60.1
Q ss_pred CCCCc-eEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCc
Q 023288 155 NNQHL-VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGR 230 (284)
Q Consensus 155 ~~~~~-~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~ 230 (284)
..++. +||-+|+ |.|..+..+++....+|++++.++.-++.+++.-.. .-++....+.... ....+.
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~~i~~~~~~~~~~~~~~~~~ 216 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK---------EVLAREDVMAERIRPLDKQR 216 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS---------EEEECC---------CCSCC
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCc---------EEEecCCcHHHHHHHhcCCc
Confidence 34554 7999997 678888888876555799999998888888763211 0111111110000 112246
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+|+-+-. . ..+..+.+.|++||++++.-
T Consensus 217 ~d~vid~~g-------~--~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 217 WAAAVDPVG-------G--RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp EEEEEECST-------T--TTHHHHHHTEEEEEEEEECS
T ss_pred ccEEEECCc-------H--HHHHHHHHhhccCCEEEEEe
Confidence 999985533 1 24667788999999998863
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.2 Score=49.18 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=39.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHcCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~------~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
..+..+|+|+=||.|.++.-+-..+ +.-+.++|+++.+++--+.++..
T Consensus 209 ~~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp~ 262 (784)
T 4ft4_B 209 PTRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHPQ 262 (784)
T ss_dssp -CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCTT
T ss_pred CCCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCCC
Confidence 3456799999999999998887655 55689999999999999888643
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.22 E-value=0.062 Score=47.63 Aligned_cols=96 Identities=20% Similarity=0.096 Sum_probs=61.1
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCC-CC--CCCCCc
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-DF--TPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~-~~--~~~~~~ 230 (284)
..++.+||-+|+| .|..+..+++....+|+++|.|+.-++.+++.-.. .++...-. ++ ... +.
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~v~~~~~~~~~~~~~~-~~ 243 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD------------HYIATLEEGDWGEKYF-DT 243 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS------------EEEEGGGTSCHHHHSC-SC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCC------------EEEcCcCchHHHHHhh-cC
Confidence 5678899999986 47777777765444699999999999988874221 11111101 11 011 47
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+|+.+-.-. + + ..++.+.+.|+|||++++.-
T Consensus 244 ~D~vid~~g~~--~-~---~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 244 FDLIVVCASSL--T-D---IDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EEEEEECCSCS--T-T---CCTTTGGGGEEEEEEEEECC
T ss_pred CCEEEECCCCC--c-H---HHHHHHHHHhcCCCEEEEec
Confidence 99998654320 0 0 23455678899999998763
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.16 Score=44.27 Aligned_cols=97 Identities=12% Similarity=0.004 Sum_probs=61.2
Q ss_pred CCCCc-eEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCc
Q 023288 155 NNQHL-VALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGR 230 (284)
Q Consensus 155 ~~~~~-~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~ 230 (284)
..++. +||-+|| |.|..+..+++....+|++++.+++-++.+++.-.. .-++....+.... ....+.
T Consensus 147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS---------EVISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS---------EEEEHHHHCSSCCCSSCCCC
T ss_pred cCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc---------EEEECCCchHHHHHHhhcCC
Confidence 34554 8999997 577777777765444699999998888888764221 1111111111111 112346
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+|+-+-. . ..+..+.+.|+|||++++.-
T Consensus 218 ~d~vid~~g-------~--~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 218 WQGAVDPVG-------G--KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp EEEEEESCC-------T--HHHHHHHTTEEEEEEEEECC
T ss_pred ccEEEECCc-------H--HHHHHHHHhhcCCCEEEEEe
Confidence 999885543 2 35778889999999998863
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.05 E-value=0.25 Score=44.01 Aligned_cols=96 Identities=15% Similarity=0.049 Sum_probs=63.2
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC------CCC-CC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP------LQD-FT 225 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d------~~~-~~ 225 (284)
..++.+||-+|+| .|..+..+++... .+|++++.|++-++.+++.-.. .++... +.+ +.
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD------------LTLNRRETSVEERRKAIM 260 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc------------EEEeccccCcchHHHHHH
Confidence 4577899999976 4777887887665 4899999999999998854211 111111 000 00
Q ss_pred --CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 --PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 --~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.....+|+|+-+-.- . ..+..+.+.|+|||++++.-.
T Consensus 261 ~~~~g~g~Dvvid~~g~------~--~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 261 DITHGRGADFILEATGD------S--RALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp HHTTTSCEEEEEECSSC------T--THHHHHHHHEEEEEEEEECCC
T ss_pred HHhCCCCCcEEEECCCC------H--HHHHHHHHHHhcCCEEEEEec
Confidence 112369999854331 1 367778889999999988643
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=91.89 E-value=0.038 Score=47.70 Aligned_cols=93 Identities=13% Similarity=-0.046 Sum_probs=60.3
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCCCCCCce
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~f 231 (284)
..++.+||-+|+ |.|..+..+++....+|++++.++..++.+++.-.. ..++... .++.+. . +.+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~---------~~~~~~~~~~~~~~-~--~~~ 190 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE---------EAATYAEVPERAKA-W--GGL 190 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS---------EEEEGGGHHHHHHH-T--TSE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC---------EEEECCcchhHHHH-h--cCc
Confidence 457789999997 578888878776555899999999888888653211 0010000 111000 1 469
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|+. -. . ..++.+.+.|+|+|++++.-
T Consensus 191 d~vid-~g-------~--~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 191 DLVLE-VR-------G--KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp EEEEE-CS-------C--TTHHHHHTTEEEEEEEEEC-
T ss_pred eEEEE-CC-------H--HHHHHHHHhhccCCEEEEEe
Confidence 99986 32 1 25677888999999988753
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.32 Score=42.87 Aligned_cols=89 Identities=20% Similarity=0.127 Sum_probs=58.0
Q ss_pred ceEEEeecc-ccHHH-HHHH-HhCCCc-EEEEeCCHH---HHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC----
Q 023288 159 LVALDCGSG-IGRIT-KNLL-IRYFNE-VDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---- 227 (284)
Q Consensus 159 ~~VLDiGcG-tG~~s-~~l~-~~~~~~-v~gvD~S~~---~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---- 227 (284)
.+||-+|+| .|.++ ..++ +....+ |+++|.+++ -++.+++.-. +.. |..+-.+.
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa-------------~~v--~~~~~~~~~i~~ 238 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDA-------------TYV--DSRQTPVEDVPD 238 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTC-------------EEE--ETTTSCGGGHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCC-------------ccc--CCCccCHHHHHH
Confidence 899999985 46777 7777 544444 999999988 8888875321 111 21110000
Q ss_pred -CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 228 -TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 -~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+.||+|+-+-.- . ..++.+.+.|+|||++++.-.
T Consensus 239 ~~gg~Dvvid~~g~------~--~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 239 VYEQMDFIYEATGF------P--KHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp HSCCEEEEEECSCC------H--HHHHHHHHHEEEEEEEEECCC
T ss_pred hCCCCCEEEECCCC------h--HHHHHHHHHHhcCCEEEEEeC
Confidence 1379999854321 1 467888899999999988643
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=1.4 Score=38.61 Aligned_cols=116 Identities=12% Similarity=0.086 Sum_probs=74.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCC--------------CCC--C-CCCCcceeEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPE--------------NHM--A-PDMHKATNFF 217 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~--------------~~~--~-~~~~~~~~~~ 217 (284)
+...|+-+|||-=.....+..... ..++=||. |..++.=++.+... ... . .....+..++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 356899999998777777765432 25777776 44444322222210 000 0 0012456788
Q ss_pred EcCCCCCC----------CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 218 CVPLQDFT----------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 218 ~~d~~~~~----------~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
.+|+.+.. +....-=++++-.++.|++.++...+++.+.+.. |+|.+++.|.+.++
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~ 234 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMG 234 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTT
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCC
Confidence 88987631 2334556888889999999999999999999876 56777777876443
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.54 E-value=0.51 Score=42.95 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=64.2
Q ss_pred cCCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023288 154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (284)
Q Consensus 154 ~~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (284)
...++.+||=.|+ |.|..+..+++....++++++.++.-++.+++.-.. ..++....+..+..
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~---------~~i~~~~~~~~~~~~~~~~~ 287 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCD---------LVINRAELGITDDIADDPRR 287 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC---------CEEEHHHHTCCTTGGGCHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC---------EEEecccccccccccccccc
Confidence 3667889999997 467888888876666799999999999988764221 11111111221100
Q ss_pred --------------CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 --------------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 --------------~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....+|+|+-+-. . ..++.+.+.|++||.+++.-
T Consensus 288 ~~~~~~~~~~~v~~~~g~g~Dvvid~~G-------~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 288 VVETGRKLAKLVVEKAGREPDIVFEHTG-------R--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSEEEECSC-------H--HHHHHHHHHSCTTCEEEESC
T ss_pred cchhhhHHHHHHHHHhCCCceEEEECCC-------c--hHHHHHHHHHhcCCEEEEEe
Confidence 00246899986443 1 35677888999999999864
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.26 E-value=1.6 Score=34.15 Aligned_cols=92 Identities=15% Similarity=-0.025 Sum_probs=53.8
Q ss_pred CceEEEeeccc-cHHH-HHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----C-CCC
Q 023288 158 HLVALDCGSGI-GRIT-KNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----P-ETG 229 (284)
Q Consensus 158 ~~~VLDiGcGt-G~~s-~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~-~~~ 229 (284)
+.+|+=+|||. |... ..|.+. +. +|+++|.++..++.+++.- +..+.+|..+.. . .-.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g-------------~~~~~gd~~~~~~l~~~~~~~ 104 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEG-------------RNVISGDATDPDFWERILDTG 104 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTT-------------CCEEECCTTCHHHHHTBCSCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCC-------------CCEEEcCCCCHHHHHhccCCC
Confidence 45899899873 4333 333334 55 5999999998888776431 334555554321 1 124
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+|+|+.... +......+-...+.+.|++.++..
T Consensus 105 ~ad~vi~~~~-----~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 105 HVKLVLLAMP-----HHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp CCCEEEECCS-----SHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCEEEEeCC-----ChHHHHHHHHHHHHHCCCCEEEEE
Confidence 6898886432 112223334456667788877765
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.19 Score=48.36 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCceEEEeeccccHHHHHHHHhC-----------CC--cEEEEeC---CHHHHHHHHHHcCC-----------CCCCCC-
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-----------FN--EVDLLEP---VSHFLDAARESLAP-----------ENHMAP- 208 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-----------~~--~v~gvD~---S~~~l~~ar~~~~~-----------~~~~~~- 208 (284)
+..+|||+|-|+|......+... .. +++++|. +++.+..+-..... ......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 45799999999999877665431 11 5899998 88777744332110 000000
Q ss_pred -------CCCcceeEEEcCCCCCC--CC---CCceeEEEecchhccCChh-hHHHHHHHHHhcCCCCcEEEE
Q 023288 209 -------DMHKATNFFCVPLQDFT--PE---TGRYDVIWVQWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 209 -------~~~~~~~~~~~d~~~~~--~~---~~~fD~Iv~~~~l~~~~~~-~~~~~l~~~~r~LkpGG~lii 267 (284)
.....+++..+|+.+.- .. ...||+|+.-..--...++ --..+++.++++++|||.+.-
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 00123455566654421 11 3679999975422111111 134789999999999998764
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.18 E-value=1.6 Score=37.89 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=61.3
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||=.|+|. |.++..+++.. ...++++|.++.-++.+++.-.. ..+...-.+.. .
T Consensus 158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~------------~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM------------QTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHG
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe------------EEEeCCCCCHHHHHHhhc
Confidence 56788999999874 55666666554 44678999999999999875322 11111111100 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+|+|+..-.. . ..++.+.++|+|||.+++.-.
T Consensus 226 ~~~g~d~v~d~~G~------~--~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 226 ELRFNQLILETAGV------P--QTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp GGCSSEEEEECSCS------H--HHHHHHHHHCCTTCEEEECCC
T ss_pred ccCCcccccccccc------c--chhhhhhheecCCeEEEEEec
Confidence 12357887754321 1 567888899999999998644
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.18 Score=48.70 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=65.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhC----------C---CcEEEEeC---CHHHHHHHHHH-----------cCCCCCC--
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY----------F---NEVDLLEP---VSHFLDAARES-----------LAPENHM-- 206 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~----------~---~~v~gvD~---S~~~l~~ar~~-----------~~~~~~~-- 206 (284)
.+..+|+|+|.|+|......++.. . -+++.+|. +...+..+-.. .......
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 356799999999999887665531 1 16899998 55555543221 1111000
Q ss_pred C------CCCCcceeEEEcCCCCCC--CC---CCceeEEEecchh-ccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 207 A------PDMHKATNFFCVPLQDFT--PE---TGRYDVIWVQWCI-GHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 207 ~------~~~~~~~~~~~~d~~~~~--~~---~~~fD~Iv~~~~l-~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+ ..-...+++..+|+.+.- .. .+.||.++.-..- ...++---..+++.+.++++|||.+.-
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 0 000235667777775431 11 3689999975421 111211124799999999999998764
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.90 E-value=0.61 Score=40.82 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=62.7
Q ss_pred cCCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023288 154 RNNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (284)
Q Consensus 154 ~~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (284)
...++.+||-+|+ |.|..+..+++....+|+++ .++.-++.+++.-.. .+. +-.++.
T Consensus 147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~-------------~i~-~~~~~~~~~~~~ 211 (343)
T 3gaz_A 147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGAT-------------PID-ASREPEDYAAEH 211 (343)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSE-------------EEE-TTSCHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCC-------------Eec-cCCCHHHHHHHH
Confidence 3667889999994 46888888887655579999 899989888765221 111 111111
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....+|+|+-+-. . ..+..+.+.|+|+|.+++.-
T Consensus 212 ~~~~g~D~vid~~g-------~--~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 212 TAGQGFDLVYDTLG-------G--PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp HTTSCEEEEEESSC-------T--HHHHHHHHHEEEEEEEEESC
T ss_pred hcCCCceEEEECCC-------c--HHHHHHHHHHhcCCeEEEEc
Confidence 11246999986433 1 46777888999999998753
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.4 Score=41.90 Aligned_cols=98 Identities=17% Similarity=0.000 Sum_probs=60.9
Q ss_pred CCCCceEEEeecccc-HHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CC--CCCC
Q 023288 155 NNQHLVALDCGSGIG-RITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT--PETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG-~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~--~~~~ 229 (284)
..++.+||=+|+|.+ .++..+++. +..+|+++|.+++-++.+++.... ..+++...|..+ .. ....
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~---------~~i~~~~~~~~~~v~~~t~g~ 231 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD---------VTINSGDVNPVDEIKKITGGL 231 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS---------EEEEC-CCCHHHHHHHHTTSS
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe---------EEEeCCCCCHHHHhhhhcCCC
Confidence 567889999999864 444445543 456899999999988888876433 112221112110 00 1123
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+|.++....- . ..+....+.|+++|.+++.-
T Consensus 232 g~d~~~~~~~~------~--~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 232 GVQSAIVCAVA------R--IAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp CEEEEEECCSC------H--HHHHHHHHTEEEEEEEEECC
T ss_pred CceEEEEeccC------c--chhheeheeecCCceEEEEe
Confidence 56766654321 2 57788889999999988863
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.84 Score=39.42 Aligned_cols=92 Identities=15% Similarity=-0.014 Sum_probs=58.9
Q ss_pred CCCCceEEEee-c-cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCce
Q 023288 155 NNQHLVALDCG-S-GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiG-c-GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~f 231 (284)
..++.+||=+| + |.|..+..+++....+|++++ ++.-++.+++.-.. ..+...-.+ +...-..+
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa~------------~~i~~~~~~~~~~~~~g~ 216 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGAE------------QCINYHEEDFLLAISTPV 216 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTCS------------EEEETTTSCHHHHCCSCE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCCC------------EEEeCCCcchhhhhccCC
Confidence 56788999997 4 468888888876656799887 55557877764321 111111111 11011469
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+|+-+-. . ..+..+.+.|+|||+++..
T Consensus 217 D~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 217 DAVIDLVG-------G--DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEEESSC-------H--HHHHHHGGGEEEEEEEEEC
T ss_pred CEEEECCC-------c--HHHHHHHHhccCCCEEEEe
Confidence 99985433 1 2337788999999999875
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=0.67 Score=40.92 Aligned_cols=88 Identities=22% Similarity=0.153 Sum_probs=57.8
Q ss_pred CceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCH---HHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC------
Q 023288 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVS---HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE------ 227 (284)
Q Consensus 158 ~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~---~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------ 227 (284)
+.+||-+|+| .|..+..+++....+|+++|.++ +-++.+++.-. +.. | .+ .+.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga-------------~~v--~-~~-~~~~~~~~~ 243 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKT-------------NYY--N-SS-NGYDKLKDS 243 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTC-------------EEE--E-CT-TCSHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCC-------------cee--c-hH-HHHHHHHHh
Confidence 7899999985 35666666654333799999998 77787775421 112 2 22 111
Q ss_pred CCceeEEEecchhccCChhhHHHHH-HHHHhcCCCCcEEEEEec
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l-~~~~r~LkpGG~lii~e~ 270 (284)
.+.+|+|+.+-.. . ..+ +.+.+.|+|||.+++.-.
T Consensus 244 ~~~~d~vid~~g~-----~---~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 244 VGKFDVIIDATGA-----D---VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp HCCEEEEEECCCC-----C---THHHHHHGGGEEEEEEEEECSC
T ss_pred CCCCCEEEECCCC-----h---HHHHHHHHHHHhcCCEEEEEec
Confidence 1469999865431 1 245 788899999999988643
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=90.41 E-value=0.83 Score=39.96 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=60.5
Q ss_pred CCceEEEee-cc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CCCC
Q 023288 157 QHLVALDCG-SG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (284)
Q Consensus 157 ~~~~VLDiG-cG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 229 (284)
++.+||=+| +| .|..+..+++....+|++++.++.-++.+++.-.. ..+..+ .++. ....
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~------------~vi~~~-~~~~~~~~~~~~~ 216 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGAD------------IVLNHK-ESLLNQFKTQGIE 216 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCS------------EEECTT-SCHHHHHHHHTCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc------------EEEECC-ccHHHHHHHhCCC
Confidence 678999984 44 67778877776555899999999999999875322 011110 0110 1124
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+|+|+-+.. -...+..+.+.|+|||.++..
T Consensus 217 g~Dvv~d~~g--------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 217 LVDYVFCTFN--------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CEEEEEESSC--------HHHHHHHHHHHEEEEEEEEES
T ss_pred CccEEEECCC--------chHHHHHHHHHhccCCEEEEE
Confidence 6999986432 125678888999999999764
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=1.3 Score=39.96 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=60.1
Q ss_pred CceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 158 HLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 158 ~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
..+|+=+|||. |......+......|+++|.++..++.+++.- +.++.+|.++.. ..-...|
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g-------------~~vi~GDat~~~~L~~agi~~A~ 70 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFG-------------MKVFYGDATRMDLLESAGAAKAE 70 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTT-------------CCCEESCTTCHHHHHHTTTTTCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCC-------------CeEEEcCCCCHHHHHhcCCCccC
Confidence 45788888863 33333333333335999999999999887531 346778877642 2234688
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++... +++....+....+.+.|...++..
T Consensus 71 ~viv~~~-----~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 71 VLINAID-----DPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp EEEECCS-----SHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEEECCC-----ChHHHHHHHHHHHHhCCCCeEEEE
Confidence 8876543 234445666777788898877775
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.31 E-value=3.7 Score=29.93 Aligned_cols=90 Identities=8% Similarity=-0.009 Sum_probs=50.6
Q ss_pred CceEEEeeccccHHHHHHH---HhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCc
Q 023288 158 HLVALDCGSGIGRITKNLL---IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~---~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 230 (284)
+++|+=+||| ..+..++ .....+|+++|.++..++..++... +.++.+|..+.. ..-..
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~------------~~~~~~d~~~~~~l~~~~~~~ 69 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID------------ALVINGDCTKIKTLEDAGIED 69 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS------------SEEEESCTTSHHHHHHTTTTT
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcC------------cEEEEcCCCCHHHHHHcCccc
Confidence 3578888885 3333332 2333469999999988776654321 334555554321 11236
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
+|+|+..-. .......+..+.+.+.++ .+++
T Consensus 70 ~d~vi~~~~-----~~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 70 ADMYIAVTG-----KEEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp CSEEEECCS-----CHHHHHHHHHHHHHTTCC-CEEE
T ss_pred CCEEEEeeC-----CchHHHHHHHHHHHcCCC-EEEE
Confidence 899887632 123334555666678876 4444
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=0.5 Score=42.95 Aligned_cols=44 Identities=20% Similarity=0.438 Sum_probs=35.4
Q ss_pred CceEEEeeccccHHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHcC
Q 023288 158 HLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLA 201 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~------~~~v~gvD~S~~~l~~ar~~~~ 201 (284)
+.+|+|+|.|+|.++..+++.. ..+++.||+|+.+.+.-++++.
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 4789999999999988887521 2279999999998887777654
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=2.2 Score=36.91 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=56.8
Q ss_pred ceEEEeeccc--cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CCCCCCceeEE
Q 023288 159 LVALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVI 234 (284)
Q Consensus 159 ~~VLDiGcGt--G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~I 234 (284)
.+|.=||+|. |.++..+.+.+.. +|+++|.++..++.+++.-. +.-...+..+ . -...|+|
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~------------~~~~~~~~~~~~---~~~aDvV 98 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI------------IDEGTTSIAKVE---DFSPDFV 98 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS------------CSEEESCTTGGG---GGCCSEE
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC------------cchhcCCHHHHh---hccCCEE
Confidence 5799999883 3445555555653 69999999998888765311 1112233332 1 1357998
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
+.+-. ......+++++...++||..++
T Consensus 99 ilavp-----~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 99 MLSSP-----VRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp EECSC-----GGGHHHHHHHHHHHSCTTCEEE
T ss_pred EEeCC-----HHHHHHHHHHHhhccCCCcEEE
Confidence 87643 3355678899999999987543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=89.53 E-value=2.9 Score=30.98 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=51.8
Q ss_pred ceEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 159 LVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 159 ~~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
.+|+=+|||. |. ++..|.+.+. +|+++|.+++.++.+++. ...++.+|..+.. ..-..+|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-------------~~~~~~gd~~~~~~l~~~~~~~~d 72 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-------------GFDAVIADPTDESFYRSLDLEGVS 72 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------------TCEEEECCTTCHHHHHHSCCTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-------------CCcEEECCCCCHHHHHhCCcccCC
Confidence 5788899863 32 2233333444 599999999988877653 1456777776532 1224689
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+.... +.+....+....+.+. ...++..
T Consensus 73 ~vi~~~~-----~~~~n~~~~~~a~~~~-~~~iia~ 102 (141)
T 3llv_A 73 AVLITGS-----DDEFNLKILKALRSVS-DVYAIVR 102 (141)
T ss_dssp EEEECCS-----CHHHHHHHHHHHHHHC-CCCEEEE
T ss_pred EEEEecC-----CHHHHHHHHHHHHHhC-CceEEEE
Confidence 8886543 1222233444445555 4555443
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.02 E-value=0.18 Score=44.03 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=40.8
Q ss_pred cceeEEEcCCCC-CC-CCCCceeEEEecchhccCCh------------hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 212 KATNFFCVPLQD-FT-PETGRYDVIWVQWCIGHLTD------------DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 212 ~~~~~~~~d~~~-~~-~~~~~fD~Iv~~~~l~~~~~------------~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
....++++|..+ +. +++++||+|++......... ..+...+.++.++|+|||.+++.
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 346788888654 22 45679999998865432210 13668899999999999999885
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.97 E-value=0.18 Score=44.83 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=57.8
Q ss_pred CCCCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCC
Q 023288 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (284)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~ 229 (284)
..++.+||=+| .|.|..+..+++....+|++++ ++.-++.+++.-.. ..+...-.++. ....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~------------~v~~~~~~~~~~~~~~~~ 247 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGAD------------DVIDYKSGSVEEQLKSLK 247 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCS------------EEEETTSSCHHHHHHTSC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCC------------EEEECCchHHHHHHhhcC
Confidence 45778999999 3478888888776555799998 77777777543211 11111101110 0114
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+|+|+-+-.- +. ..+....+.|++||++++.
T Consensus 248 g~D~vid~~g~-----~~--~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 248 PFDFILDNVGG-----ST--ETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp CBSEEEESSCT-----TH--HHHGGGGBCSSSCCEEEES
T ss_pred CCCEEEECCCC-----hh--hhhHHHHHhhcCCcEEEEe
Confidence 69999854331 11 3456777899999999875
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=88.70 E-value=0.28 Score=43.46 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=58.0
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCCCCCCCceeEE
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDVI 234 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~fD~I 234 (284)
++.+||-+|+| .|..+..+++....+|++++.++.-++.+++.+... .++.. +...+.-..+.+|+|
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~-----------~v~~~~~~~~~~~~~~~~D~v 255 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD-----------SFLVSRDQEQMQAAAGTLDGI 255 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS-----------EEEETTCHHHHHHTTTCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc-----------eEEeccCHHHHHHhhCCCCEE
Confidence 67899999986 366777777655557999999998888877544321 11111 100000001369999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.+-... ..++.+.+.|++||.++..-
T Consensus 256 id~~g~~--------~~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 256 IDTVSAV--------HPLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp EECCSSC--------CCSHHHHHHEEEEEEEEECC
T ss_pred EECCCcH--------HHHHHHHHHHhcCCEEEEEc
Confidence 8654321 12445667889999988764
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=0.16 Score=44.83 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=58.9
Q ss_pred CC-CCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCCCCCCCce
Q 023288 155 NN-QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRY 231 (284)
Q Consensus 155 ~~-~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~f 231 (284)
.. ++.+||-+|+| .|..+..+++....+|+++|.++.-++.+++.+... . ++.. +...+.-..+.+
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~--------~---vi~~~~~~~~~~~~~g~ 245 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGAD--------D---YVIGSDQAKMSELADSL 245 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCS--------C---EEETTCHHHHHHSTTTE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCc--------e---eeccccHHHHHHhcCCC
Confidence 44 77899999986 466677777654447999999998888887444321 0 1111 100000001369
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|+-+-.-. ..+..+.+.|+|||++++.-
T Consensus 246 D~vid~~g~~--------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 246 DYVIDTVPVH--------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp EEEEECCCSC--------CCSHHHHTTEEEEEEEEECS
T ss_pred CEEEECCCCh--------HHHHHHHHHhccCCEEEEeC
Confidence 9998543311 23455678999999998864
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=88.39 E-value=1.3 Score=45.84 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=39.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
...+++|+=||.|.++..+...++ ..+.++|+++..++.-+.++..
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p~ 896 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPG 896 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCTT
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC
Confidence 457899999999999999887786 4689999999999998888643
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=87.56 E-value=1.9 Score=35.86 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=64.0
Q ss_pred CCceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-------
Q 023288 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (284)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------- 226 (284)
.+.++|=.|++.|. ++..|++.+. +|+++|.++..++...+.. ..++.++.+|+.+...
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~ 75 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF----------GPRVHALRSDIADLNEIAVLGAA 75 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH----------GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCCHHHHHHHHHH
Confidence 45678878876553 3444554555 5999999998887776654 2357888899887420
Q ss_pred ---CCCceeEEEecchhc------cCChhhHHH-----------HHHHHHhcCCCCcEEEEE
Q 023288 227 ---ETGRYDVIWVQWCIG------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 ---~~~~fD~Iv~~~~l~------~~~~~~~~~-----------~l~~~~r~LkpGG~lii~ 268 (284)
.-+..|+++.+-... .++.+++.. +.+.+...++++|.+++.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 76 AGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp HHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 014789998664332 234444332 345566667778888775
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=2.2 Score=37.64 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=60.1
Q ss_pred CCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023288 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (284)
Q Consensus 156 ~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (284)
.++.+||=+|+ |.|..+..+++....+|+++. |+.-++.+++.-.. .++...-.++. ..+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~------------~vi~~~~~~~~~~v~~~t~ 229 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAE------------EVFDYRAPNLAQTIRTYTK 229 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCS------------EEEETTSTTHHHHHHHHTT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCc------------EEEECCCchHHHHHHHHcc
Confidence 57789999998 378888888876655788885 88888888764221 11211111110 112
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcC-CCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~L-kpGG~lii~e 269 (284)
+.+|+|+-+-.- . ..+..+.+.| ++||++++.-
T Consensus 230 g~~d~v~d~~g~------~--~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 230 NNLRYALDCITN------V--ESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp TCCCEEEESSCS------H--HHHHHHHHHSCTTCEEEEESS
T ss_pred CCccEEEECCCc------h--HHHHHHHHHhhcCCCEEEEEe
Confidence 459999854331 1 4667777888 6999998763
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=86.81 E-value=4.3 Score=30.57 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=54.7
Q ss_pred ceEEEeeccccHHHHHHHH----hCCCcEEEEeCC-HHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCC
Q 023288 159 LVALDCGSGIGRITKNLLI----RYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~----~~~~~v~gvD~S-~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 229 (284)
.+|+=+|| |..+..+++ .+. +|+++|.+ +...+..++.... .+.++.+|..+.. ..-.
T Consensus 4 ~~vlI~G~--G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~ 70 (153)
T 1id1_A 4 DHFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGD----------NADVIPGDSNDSSVLKKAGID 70 (153)
T ss_dssp SCEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCT----------TCEEEESCTTSHHHHHHHTTT
T ss_pred CcEEEECC--CHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcC----------CCeEEEcCCCCHHHHHHcChh
Confidence 46777876 555544433 344 59999997 4555444443321 2567788876532 1124
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..|+|++... +++....+....+.+.|...++..
T Consensus 71 ~ad~vi~~~~-----~d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 71 RCRAILALSD-----NDADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp TCSEEEECSS-----CHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred hCCEEEEecC-----ChHHHHHHHHHHHHHCCCCEEEEE
Confidence 6888887543 223345666677777777777664
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=0.35 Score=43.17 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=55.0
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|+=+|+| .|......+.....+|+++|.++.-++.+++.+... +.....+..++...-..+|+|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~----------~~~~~~~~~~l~~~l~~aDvVi 236 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGR----------IHTRYSSAYELEGAVKRADLVI 236 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS----------SEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCe----------eEeccCCHHHHHHHHcCCCEEE
Confidence 46789999986 344444444444447999999999888887654321 1111001001100002579998
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+-.......+. -+.+++.+.+||||.++..
T Consensus 237 ~~~~~p~~~t~~--li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 237 GAVLVPGAKAPK--LVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp ECCCCTTSCCCC--CBCHHHHTTSCTTCEEEEG
T ss_pred ECCCcCCCCCcc--eecHHHHhcCCCCcEEEEE
Confidence 643211111001 1245567789999988765
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=86.76 E-value=4 Score=33.99 Aligned_cols=93 Identities=9% Similarity=-0.059 Sum_probs=56.5
Q ss_pred ceEEEeeccccHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 159 LVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~---~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++||=.|| |.++..+++.. ..+|++++-++.-.+.... .+++++.+|+.++. -..+|+||
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------------~~~~~~~~D~~d~~--~~~~d~vi 68 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA-------------SGAEPLLWPGEEPS--LDGVTHLL 68 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH-------------TTEEEEESSSSCCC--CTTCCEEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh-------------CCCeEEEecccccc--cCCCCEEE
Confidence 57999995 87777766532 2369999988765544332 23788889998866 45789999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..........+....+++.+.+.-..-+.|++.
T Consensus 69 ~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~ 101 (286)
T 3ius_A 69 ISTAPDSGGDPVLAALGDQIAARAAQFRWVGYL 101 (286)
T ss_dssp ECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEE
T ss_pred ECCCccccccHHHHHHHHHHHhhcCCceEEEEe
Confidence 766544333222334444444421222455543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=86.46 E-value=0.38 Score=42.66 Aligned_cols=99 Identities=8% Similarity=0.036 Sum_probs=54.8
Q ss_pred CceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 158 ~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+.+|+=+|+| .|.....++.....+|+++|.++.-++.+++.... .+.....+..++.-.-..+|+|+.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~DvVI~ 236 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLLIG 236 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc----------eeEeeeCCHHHHHHHHcCCCEEEE
Confidence 4789999986 44444445544333799999999988888766432 111111111111000025899986
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+-.......+. -+.+...+.++|||.++..
T Consensus 237 ~~~~~~~~~~~--li~~~~~~~~~~g~~ivdv 266 (361)
T 1pjc_A 237 AVLVPGRRAPI--LVPASLVEQMRTGSVIVDV 266 (361)
T ss_dssp CCCCTTSSCCC--CBCHHHHTTSCTTCEEEET
T ss_pred CCCcCCCCCCe--ecCHHHHhhCCCCCEEEEE
Confidence 54332211001 1134466788999977764
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=85.59 E-value=3.5 Score=34.99 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=63.0
Q ss_pred CCceEEEeecc----ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C
Q 023288 157 QHLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P 226 (284)
Q Consensus 157 ~~~~VLDiGcG----tG~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 226 (284)
.+.++|=.|++ .|. ++..|++.+. +|+.++.++...+.+++.... ..++.++.+|+.+.. +
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~ 100 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEE--------LGAFVAGHCDVADAASIDAVF 100 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHH--------HTCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHh--------cCCceEEECCCCCHHHHHHHH
Confidence 45678888866 333 4455565565 599999987655555444322 123678889988742 0
Q ss_pred -----CCCceeEEEecchhc----------cCChhhHH-----------HHHHHHHhcCCCCcEEEEEe
Q 023288 227 -----ETGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 -----~~~~fD~Iv~~~~l~----------~~~~~~~~-----------~~l~~~~r~LkpGG~lii~e 269 (284)
.-+..|++|.+-.+. ..+.+++. .+++.+...++++|.+++.-
T Consensus 101 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 101 ETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 014789998665432 23333332 34556677778889888763
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.47 E-value=3.2 Score=34.72 Aligned_cols=104 Identities=20% Similarity=0.153 Sum_probs=63.0
Q ss_pred CCceEEEeeccccH---HHHHHHHhCCCcEEEEeCC------------HHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC
Q 023288 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPV------------SHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (284)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S------------~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~ 221 (284)
.+.+||=.|++.|. ++..|++.+. +|+.+|.+ ...++.+....... ..++.++.+|+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~ 80 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-------GRKAYTAEVDV 80 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-------TSCEEEEECCT
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhc-------CCceEEEEccC
Confidence 35678877776553 3444554555 59999987 66666555444322 24578888998
Q ss_pred CCCC-----CC-----CCceeEEEecchhcc----CChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023288 222 QDFT-----PE-----TGRYDVIWVQWCIGH----LTDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 222 ~~~~-----~~-----~~~fD~Iv~~~~l~~----~~~~~~~-----------~~l~~~~r~LkpGG~lii~ 268 (284)
.+.. +. -+..|++|.+-.+.. .+.+++. .+++.+...++++|.+++.
T Consensus 81 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 81 RDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 8742 00 136899987654322 3333333 2445667777888888775
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=85.39 E-value=1.4 Score=38.59 Aligned_cols=91 Identities=5% Similarity=-0.055 Sum_probs=54.7
Q ss_pred ceEEEe-ecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------CCCCc
Q 023288 159 LVALDC-GSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PETGR 230 (284)
Q Consensus 159 ~~VLDi-GcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~ 230 (284)
.+||=. |+| .|..+..+++....+|++++.++.-++.+++.-.. ..+..+-.++. .....
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~------------~~~~~~~~~~~~~v~~~~~~~g 233 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAA------------HVLNEKAPDFEATLREVMKAEQ 233 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCS------------EEEETTSTTHHHHHHHHHHHHC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC------------EEEECCcHHHHHHHHHHhcCCC
Confidence 455543 333 56666666665444799999999999988864221 11111111110 00126
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|+|+-+-.- ..+..+.+.|+|||.+++.-.
T Consensus 234 ~D~vid~~g~---------~~~~~~~~~l~~~G~iv~~G~ 264 (349)
T 3pi7_A 234 PRIFLDAVTG---------PLASAIFNAMPKRARWIIYGR 264 (349)
T ss_dssp CCEEEESSCH---------HHHHHHHHHSCTTCEEEECCC
T ss_pred CcEEEECCCC---------hhHHHHHhhhcCCCEEEEEec
Confidence 9999864431 234677889999999998743
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.04 E-value=7 Score=34.58 Aligned_cols=99 Identities=10% Similarity=-0.032 Sum_probs=64.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
.+.+||.|+.+.|.++..++.. .++.+.-|--.....+.++..+++. ...+++... +.. ..+.||+|+.
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~----~~~~~~~~~-~~~---~~~~~~~v~~ 106 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGID----ESSVKFLDS-TAD---YPQQPGVVLI 106 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCC----GGGSEEEET-TSC---CCSSCSEEEE
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCC----ccceEeccc-ccc---cccCCCEEEE
Confidence 4468999999999999877633 2455533655555666666554442 123444322 222 2367999887
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...= + ...+...+..+...|+||+.+++..
T Consensus 107 ~lpk-~--~~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 107 KVPK-T--LALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp ECCS-C--HHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred EcCC-C--HHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 5541 1 2357788999999999999988763
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.90 E-value=0.54 Score=41.77 Aligned_cols=100 Identities=10% Similarity=0.041 Sum_probs=53.8
Q ss_pred CCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|+=+|+| .|......+.....+|+++|.++.-++.+++.... .+.....+..++.-.-..+|+|+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~----------~~~~~~~~~~~l~~~~~~~DvVi 234 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG----------RVITLTATEANIKKSVQHADLLI 234 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----------SEEEEECCHHHHHHHHHHCSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc----------eEEEecCCHHHHHHHHhCCCEEE
Confidence 45789999985 34444444444444799999999888877664422 11111111111100002589998
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+-...... ...-+.+++.+.+||||.++..
T Consensus 235 ~~~g~~~~~--~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 235 GAVLVPGAK--APKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp ECCC---------CCSCHHHHTTSCTTCEEEEC
T ss_pred ECCCCCccc--cchhHHHHHHHhhcCCCEEEEE
Confidence 654432100 0011245677888999987764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=84.74 E-value=2.3 Score=32.29 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=52.6
Q ss_pred CCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCc
Q 023288 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (284)
Q Consensus 156 ~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 230 (284)
.++.+|+=+|||. |......+.....+|+++|.++..++.+++ . ....++.+|..+.. ..-..
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~---------~g~~~~~~d~~~~~~l~~~~~~~ 84 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E---------FSGFTVVGDAAEFETLKECGMEK 84 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T---------CCSEEEESCTTSHHHHHTTTGGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c---------CCCcEEEecCCCHHHHHHcCccc
Confidence 4567899999873 443333333333369999998765543321 1 11334555543311 11236
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+|+..-. .+.....+..+.+.+.|...++..
T Consensus 85 ad~Vi~~~~-----~~~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 85 ADMVFAFTN-----DDSTNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp CSEEEECSS-----CHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCEEEEEeC-----CcHHHHHHHHHHHHHCCCCeEEEE
Confidence 898887543 223334555566666666666654
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=84.53 E-value=7.3 Score=32.25 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=54.4
Q ss_pred ceEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 159 LVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 159 ~~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
.+|.=||||. |. ++..+...+...|+++|.+++.++.+.+... +.. ..+..+.. ...|+|+.
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g------------~~~-~~~~~~~~---~~~Dvvi~ 74 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVE------------AEY-TTDLAEVN---PYAKLYIV 74 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTT------------CEE-ESCGGGSC---SCCSEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC------------Cce-eCCHHHHh---cCCCEEEE
Confidence 5788899973 33 3344444554348999999988887766532 111 22332221 25798887
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+-. +.....+++.+...++||..++-.
T Consensus 75 av~-----~~~~~~v~~~l~~~~~~~~ivv~~ 101 (266)
T 3d1l_A 75 SLK-----DSAFAELLQGIVEGKREEALMVHT 101 (266)
T ss_dssp CCC-----HHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred ecC-----HHHHHHHHHHHHhhcCCCcEEEEC
Confidence 543 234457888888888887655543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=84.37 E-value=5.2 Score=33.08 Aligned_cols=106 Identities=13% Similarity=0.073 Sum_probs=64.7
Q ss_pred CCceEEEeecc----ccH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----C
Q 023288 157 QHLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P 226 (284)
Q Consensus 157 ~~~~VLDiGcG----tG~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 226 (284)
.+.++|=.|++ .|. ++..|++.+. +|+.++.+....+.+.+.....+ ..++.++.+|+.+.. +
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLD------RNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSS------SCCCEEEECCCSSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcC------CCCceEEeCCCCCHHHHHHHH
Confidence 35678888866 333 4555565665 59999888765555555443321 125788999998753 0
Q ss_pred C-----CCceeEEEecchhc----------cCChhhHH-----------HHHHHHHhcCCCCcEEEEEe
Q 023288 227 E-----TGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 ~-----~~~fD~Iv~~~~l~----------~~~~~~~~-----------~~l~~~~r~LkpGG~lii~e 269 (284)
. -+..|+++.+-.+. ..+.+++. .+++.+...++++|.+++.-
T Consensus 79 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 79 ASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 0 13689888664332 23333333 25567777888889888763
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.53 E-value=7.6 Score=31.12 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=54.5
Q ss_pred eEEEeeccccHHHHHHHH----hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023288 160 VALDCGSGIGRITKNLLI----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~----~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (284)
+|+=+|+ |.++..+++ .+. .|+++|.+++.++...+.. ...++.+|..+.. ..-..+
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~------------~~~~i~gd~~~~~~l~~a~i~~a 66 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKL------------KATIIHGDGSHKEILRDAEVSKN 66 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHS------------SSEEEESCTTSHHHHHHHTCCTT
T ss_pred EEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHc------------CCeEEEcCCCCHHHHHhcCcccC
Confidence 4666776 445444433 344 5999999999888765442 2456778876532 112468
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+|++... ++.....+....+.+.|...++..
T Consensus 67 d~vi~~~~-----~d~~n~~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 67 DVVVILTP-----RDEVNLFIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp CEEEECCS-----CHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred CEEEEecC-----CcHHHHHHHHHHHHHcCCCeEEEE
Confidence 88886543 223345566666667777766653
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=81.85 E-value=3.1 Score=37.47 Aligned_cols=45 Identities=16% Similarity=0.002 Sum_probs=38.1
Q ss_pred CceEEEeeccccHHHHHHHHhC--CCc----EEEEeCCHHHHHHHHHHcCC
Q 023288 158 HLVALDCGSGIGRITKNLLIRY--FNE----VDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~--~~~----v~gvD~S~~~l~~ar~~~~~ 202 (284)
..+|+|+=||.|.....+...+ +.- |.++|+++..++.-+.++..
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 4699999999999999887766 334 88899999999998888764
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=80.83 E-value=7.3 Score=32.85 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=61.4
Q ss_pred CCceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHH-HHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023288 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSH-FLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~-~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (284)
++.+||=.|++.|. ++..|++.+. +|+.++.+.. ..+...+..... ..++.++.+|+.+.. +.
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKE-------GVKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTT-------TCCEEEEESCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhc-------CCcEEEEECCCCCHHHHHHHHH
Confidence 45678888876553 3444454555 5999988764 344444333322 245788889988742 00
Q ss_pred -----CCceeEEEecchh-------ccCChhhHH-----------HHHHHHHhcCCCCcEEEEE
Q 023288 228 -----TGRYDVIWVQWCI-------GHLTDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 228 -----~~~fD~Iv~~~~l-------~~~~~~~~~-----------~~l~~~~r~LkpGG~lii~ 268 (284)
-+..|++|.+-.. ..++.+++. .+++.+...++++|.+++.
T Consensus 118 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 118 ETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 1368999866332 223434332 3456677778888988775
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=80.69 E-value=9 Score=33.65 Aligned_cols=101 Identities=13% Similarity=0.024 Sum_probs=58.1
Q ss_pred CceEEEeeccc-cH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCC-CCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 158 HLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-MAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 158 ~~~VLDiGcGt-G~-~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..+|.=||+|. |. ++..+++.+. +|+.+|.++..++..++......+ .......++.+. .|+.+. -...|+|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea---~~~aDvV 103 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKAS---LEGVTDI 103 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHH---HTTCCEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHH---HhcCCEE
Confidence 46799999983 43 3343443344 599999999988887765321100 000111122221 222110 1247888
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+.+- +......+++++...++|+-.++..
T Consensus 104 ilaV-----p~~~~~~vl~~i~~~l~~~~ivvs~ 132 (356)
T 3k96_A 104 LIVV-----PSFAFHEVITRMKPLIDAKTRIAWG 132 (356)
T ss_dssp EECC-----CHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred EECC-----CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8653 3446778999999999988766554
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=80.40 E-value=11 Score=31.51 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=52.0
Q ss_pred eEEEeeccc-cH-HHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCC-ceeEEE
Q 023288 160 VALDCGSGI-GR-ITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDVIW 235 (284)
Q Consensus 160 ~VLDiGcGt-G~-~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~fD~Iv 235 (284)
+|.=||+|. |. ++..+...+.. +|+++|.++..++.+++. |. ... ...+..+. -. ..|+|+
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~----g~-------~~~-~~~~~~~~---~~~~aDvVi 67 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI-------IDE-GTTSIAKV---EDFSPDFVM 67 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS-------CSE-EESCGGGG---GGTCCSEEE
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC----CC-------ccc-ccCCHHHH---hcCCCCEEE
Confidence 577788874 33 33434434442 699999999888877643 11 001 11222211 12 578888
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
.+-. ......++.++...++|+..++.
T Consensus 68 lavp-----~~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 68 LSSP-----VRTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp ECSC-----HHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EcCC-----HHHHHHHHHHHHhhCCCCcEEEE
Confidence 6543 33455788888888999886554
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=80.01 E-value=2.7 Score=38.89 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=53.8
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.++.+|+=+|+| .|......++....+|+++|.++.-++.+++.- .++ .++.+. . ...|+|
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G-------------a~~--~~l~e~-l--~~aDvV 333 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG-------------FDV--VTVEEA-I--GDADIV 333 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------------CEE--CCHHHH-G--GGCSEE
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------------CEE--ecHHHH-H--hCCCEE
Confidence 467899999987 344444445444447999999998877776431 111 122111 1 358999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+..-.-.++- -.+..+.+||||+++..-
T Consensus 334 i~atgt~~~i-------~~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 334 VTATGNKDII-------MLEHIKAMKDHAILGNIG 361 (494)
T ss_dssp EECSSSSCSB-------CHHHHHHSCTTCEEEECS
T ss_pred EECCCCHHHH-------HHHHHHhcCCCcEEEEeC
Confidence 8763222211 124566789999988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 284 | ||||
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 3e-40 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 4e-20 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 5e-06 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 6e-05 | |
| d1mjfa_ | 276 | c.66.1.17 (A:) Putative spermidine synthetase PF01 | 2e-04 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 2e-04 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 2e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-04 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.001 | |
| d2o07a1 | 285 | c.66.1.17 (A:16-300) Spermidine synthase {Human (H | 0.001 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 0.002 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.002 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.002 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.003 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 138 bits (348), Expect = 3e-40
Identities = 79/218 (36%), Positives = 113/218 (51%), Gaps = 18/218 (8%)
Query: 62 KHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVD 121
K S + +SG D++GK +++ +EMW+ ++ D + + WY + + YW V A+V
Sbjct: 8 KEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVS 65
Query: 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181
GVLGG +V++VDI+GS F+ L ALDCG+GIGRITKNLL + +
Sbjct: 66 GVLGGMDHVHDVDIEGSRNFIASLPGHGTSR--------ALDCGAGIGRITKNLLTKLYA 117
Query: 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241
DLLEPV H L+ E F ++ T YD+I +QW
Sbjct: 118 TTDLLEPVKHMLE--------EAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169
Query: 242 HLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLL 279
+LTD DFV FFK + L P G+ KEN + FL+
Sbjct: 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV 207
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (207), Expect = 4e-20
Identities = 74/179 (41%), Positives = 106/179 (59%), Gaps = 9/179 (5%)
Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L +
Sbjct: 6 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGT---S 62
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
ALDCG+GIGRITK LL+ F EVD+++ FL + ++ + + N+FC
Sbjct: 63 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLV------QAKTYLGEEGKRVRNYFCC 116
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFL 278
LQDFTPE YDVIW+QW IGHLTD F +R K L+P G V+K+N+A+ G L
Sbjct: 117 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL 175
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 44.2 bits (103), Expect = 5e-06
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 8/107 (7%)
Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
LD G G GR + L ++ D S+A + +
Sbjct: 34 TLDLGCGNGRNSLYLAANGYDV--------TAWDKNPASMANLERIKAAEGLDNLQTDLV 85
Query: 221 LQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267
+ G YD I + L + KPGG+ ++
Sbjct: 86 DLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLI 132
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.5 bits (96), Expect = 6e-05
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL--APENHMAPDMHKATNFFCV 219
LD G G + L+ V ++ L A + + +
Sbjct: 61 LDVACGTGVDSIMLV-EEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119
Query: 220 PLQDFTPETGRYDVIWVQWCIGHLTD-----DDFVSFFKRAKVGLKPGGFFVL 267
+D G VI + HL D + K ++PGG V+
Sbjct: 120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 6/122 (4%)
Query: 151 PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM 210
+ + L G G G + +L +EV ++E + +++ + +N + M
Sbjct: 66 AMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM 125
Query: 211 HKA----TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS--FFKRAKVGLKPGGF 264
+F +DVI S F++ L G
Sbjct: 126 LNGKHEKAKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 185
Query: 265 FV 266
+V
Sbjct: 186 YV 187
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 2e-04
Identities = 18/108 (16%), Positives = 28/108 (25%), Gaps = 8/108 (7%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
L+ G G+ + +E ++E R+ + H +
Sbjct: 58 LEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA--- 114
Query: 222 QDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFV 266
T G +D I F A LKPGG
Sbjct: 115 --PTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 20/141 (14%), Positives = 42/141 (29%), Gaps = 12/141 (8%)
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFN-------EVDLLEPVSHFLDAARESLAPENH 205
+ L G G G I +L + +++EP + + +E +A ++
Sbjct: 36 GDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN 95
Query: 206 MAPDMHKATNFFCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG 262
+ Q E ++D I + + ++ D + K L
Sbjct: 96 LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV--KDIPATLKFFHSLLGTN 153
Query: 263 GFFVLKENIARSGTFLLSHSL 283
++ SG L
Sbjct: 154 AKMLIIVVSGSSGWDKLWKKY 174
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 39.2 bits (90), Expect = 3e-04
Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 11/117 (9%)
Query: 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213
+ N+ + LD +G G + + +V + L + +
Sbjct: 14 KGNEEV--LDVATGGGHVAN-AFAPFVKKVVAFDLTEDIL--------KVARAFIEGNGH 62
Query: 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270
V V I + SF A LK GG +L +N
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN 119
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 37.2 bits (85), Expect = 0.001
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 9/108 (8%)
Query: 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221
LD G+G G Y E ++ ++ + + F
Sbjct: 21 LDIGAGAGHTAL-AFSPYVQECIGVDATKEMVEV------ASSFAQEKGVENVRFQQGTA 73
Query: 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269
+ +D+I ++ H D + LK G F+L +
Sbjct: 74 ESLPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVD 119
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.001
Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 35/194 (18%)
Query: 102 KTQWYREGISYWEGVEAS--VDGVL---------------GGFGNVNEVDIKGSEAFLQM 144
+ W+RE S W G S V+ +L +GNV +D +Q
Sbjct: 2 REGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLD-----GVIQC 56
Query: 145 LLSDRFPNARNNQHLV---------ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLD 194
D F +L L G G G + + ++ V E +
Sbjct: 57 TERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQ 116
Query: 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWC--IGHLTDDDFVSFF 252
+++ L P + K T + +DVI +G S++
Sbjct: 117 VSKKFL-PGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYY 175
Query: 253 KRAKVGLKPGGFFV 266
+ K LK G
Sbjct: 176 QLMKTALKEDGVLC 189
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 36.7 bits (83), Expect = 0.002
Identities = 13/64 (20%), Positives = 21/64 (32%)
Query: 204 NHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263
A F + + E +D + I H + FK + LKP G
Sbjct: 76 REYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 135
Query: 264 FFVL 267
F++
Sbjct: 136 KFIM 139
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.0 bits (85), Expect = 0.002
Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 5/121 (4%)
Query: 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218
+D GSG+G + E + D N
Sbjct: 219 TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 278
Query: 219 VPLQDFTPETGRYDVIW----VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274
L+ + R + V L D+D ++ K G + +++
Sbjct: 279 FSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSL 338
Query: 275 G 275
Sbjct: 339 T 339
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 36.4 bits (83), Expect = 0.002
Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 11/139 (7%)
Query: 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS 190
N D+ ++ ++ L++ + + + +D G G G + L+
Sbjct: 4 NTRDLYYNDDYVSFLVNTVWKITKP---VHIVDYGCGYGYLGLVLMPLLPEGSKY----- 55
Query: 191 HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS 250
+D+ LA + + + F +YD+ + H+T + +
Sbjct: 56 TGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAICHAFLLHMTTPE--T 112
Query: 251 FFKRAKVGLKPGGFFVLKE 269
++ +K GG + E
Sbjct: 113 MLQKMIHSVKKGGKIICFE 131
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.003
Identities = 22/159 (13%), Positives = 42/159 (26%), Gaps = 35/159 (22%)
Query: 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200
+ L+ F +D GSG +F ++ + + + L
Sbjct: 39 WKLRCLAQTFATGEV-SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWL 97
Query: 201 APENHMAPDMHKATNFFCV-------------------------------PLQDFTPETG 229
E A + + C+ PL +P
Sbjct: 98 QEE-PGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPL 156
Query: 230 RYDVIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFV 266
D + +C+ ++ D F L+PGG +
Sbjct: 157 PADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL 195
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 284 | |||
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 100.0 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.96 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.89 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.89 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.89 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.88 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.86 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.85 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.85 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.83 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.83 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.83 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.82 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.81 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.81 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.81 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.81 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.8 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.8 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.8 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.78 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.75 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.74 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.74 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.71 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.71 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.7 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.7 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.68 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.68 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.67 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.65 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.64 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.63 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.62 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.61 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.59 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.58 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.57 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.57 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.56 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.55 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.55 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.53 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.53 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.52 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.47 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.45 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.41 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.41 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.4 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.35 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.35 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.33 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.33 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.33 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.31 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.27 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.26 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.25 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.24 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.18 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.18 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.17 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.17 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.16 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.15 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.14 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.11 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.08 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.05 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.03 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.01 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.91 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.81 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.73 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.73 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.73 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.69 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.67 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.62 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.57 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.56 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.53 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.51 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.5 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.4 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.38 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.32 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.27 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.18 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.13 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.12 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.07 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.94 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.92 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.83 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.79 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.76 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.36 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.08 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.02 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.95 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.92 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.84 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.82 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.82 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.66 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.66 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.5 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.46 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.45 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.16 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.97 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.95 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.89 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.8 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.8 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.45 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.37 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.32 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.26 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.19 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.12 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.1 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.09 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.08 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.05 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.99 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.69 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.64 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.39 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 94.18 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 93.9 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.75 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 93.58 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 93.49 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.78 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.62 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.26 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.06 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.89 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 88.76 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 88.42 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 88.13 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 87.92 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.47 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 87.28 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.2 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 86.24 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.09 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.75 |
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=2.6e-34 Score=246.67 Aligned_cols=197 Identities=40% Similarity=0.747 Sum_probs=169.1
Q ss_pred ccccccccCCCCCCcccCHHHHHHHHhcCCccchhhhhHHHHHHhhchhcccccccccccCCCccccccccccHHHHHHH
Q 023288 66 SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145 (284)
Q Consensus 66 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (284)
+....+.|.++.|++|.+++++|++.+..... .....||.++.+||+.++.+.+++++||..+++.++.....++..+
T Consensus 12 ~~~~~~~g~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~fl~~l 89 (254)
T d1xtpa_ 12 SRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASL 89 (254)
T ss_dssp -CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTS
T ss_pred cccccccccCCCCCEeccHHHHHHHHhccccc--ccchhhhhchhhhhhcCchhcccccCCccccchhhHHHHHHHHhhC
Confidence 55567889999999999999999999875443 3445699999999999999999999999999888887777776643
Q ss_pred HHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC
Q 023288 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (284)
Q Consensus 146 ~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 225 (284)
. ..+..+|||+|||+|+++..++.+++.+|++||+|+.|++.|++++.. ..+++|++.|+.+++
T Consensus 90 ~--------~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--------~~~~~~~~~d~~~~~ 153 (254)
T d1xtpa_ 90 P--------GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASMETAT 153 (254)
T ss_dssp T--------TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCGGGCC
T ss_pred C--------CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--------cccceeEEccccccc
Confidence 2 456789999999999999999988888899999999999999999865 356899999999999
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC-CcccCC
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-GTFLLS 280 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~-~~~~d~ 280 (284)
+++++||+|++.++++|++++++..+++++.++|||||.|++.|++... .++.|.
T Consensus 154 ~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~ 209 (254)
T d1xtpa_ 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDK 209 (254)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEET
T ss_pred cCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecc
Confidence 8889999999999999999888999999999999999999999987653 344443
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6e-30 Score=214.90 Aligned_cols=169 Identities=45% Similarity=0.895 Sum_probs=144.0
Q ss_pred hhHHHHHHhhchhcccccccccccCCCccccccccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCC
Q 023288 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (284)
Q Consensus 102 ~~~~~~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~ 181 (284)
...||+++.+||++++.++++++++|+.+...+......++...+..... ..++.+|||||||+|.++..++.+++.
T Consensus 8 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~ 84 (222)
T d2ex4a1 8 EKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLFR 84 (222)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHHhCCCccccccccCccccchhhHHHHHHHHHHHHHhccC---CCCCCEEEEeccCCCHhhHHHHHhcCC
Confidence 45689999999999999999999999988877777777777766554433 456789999999999999988878777
Q ss_pred cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCC
Q 023288 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (284)
Q Consensus 182 ~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~Lkp 261 (284)
+|+|||+|+.|++.|++++...+ ..+++|+++|++++++++++||+|++..++||++++++..++++++++|||
T Consensus 85 ~v~~vD~s~~~l~~ak~~~~~~~------~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~ 158 (222)
T d2ex4a1 85 EVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRP 158 (222)
T ss_dssp EEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred EEEEeecCHHHhhcccccccccc------ccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHhcCC
Confidence 89999999999999999986533 246799999999999888999999999999999988888999999999999
Q ss_pred CcEEEEEeccCCCCcccC
Q 023288 262 GGFFVLKENIARSGTFLL 279 (284)
Q Consensus 262 GG~lii~e~~~~~~~~~d 279 (284)
||.+++.|++..++...+
T Consensus 159 ~G~~~i~~~~~~~~~~~~ 176 (222)
T d2ex4a1 159 NGIIVIKDNMAQEGVILD 176 (222)
T ss_dssp EEEEEEEEEEBSSSEEEE
T ss_pred cceEEEEEcccccccccc
Confidence 999999998877765543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.3e-23 Score=177.09 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=98.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.+++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+. .++.++++|++++++++++||+|
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBTTBCCSCTTCEEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccc------cccccccccccccccccccccee
Confidence 67899999999999999999887654 699999999999999998765432 46899999999999999999999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+|..+++|++ +...+++++.++|||||++++.+...+.
T Consensus 87 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~~~~~~~~~~~ 124 (234)
T d1xxla_ 87 TCRYAAHHFS--DVRKAVREVARVLKQDGRFLLVDHYAPE 124 (234)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred eeeceeeccc--CHHHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence 9999999998 6669999999999999999998875543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.89 E-value=3.9e-23 Score=178.99 Aligned_cols=114 Identities=20% Similarity=0.281 Sum_probs=101.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|..+..++++...+|+|+|+|+.|++.|+++....++ ..++++.++|+.++++++++||+|
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl-----~~~v~~~~~d~~~l~~~~~sfD~V 139 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLEIPCEDNSYDFI 139 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc-----cccccccccccccccccccccchh
Confidence 668899999999999999999877555799999999999999998876554 457999999999999998999999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
++..+++|++ +...+++++.++|||||+|++.+.+..++
T Consensus 140 ~~~~~l~h~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 178 (282)
T d2o57a1 140 WSQDAFLHSP--DKLKVFQECARVLKPRGVMAITDPMKEDG 178 (282)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEECTT
T ss_pred hccchhhhcc--CHHHHHHHHHHhcCCCcEEEEEEeecCCC
Confidence 9999999998 66699999999999999999998765443
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=3.4e-23 Score=172.64 Aligned_cols=119 Identities=22% Similarity=0.239 Sum_probs=100.3
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~ 218 (284)
...+..++...+ ++..+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++.... ...+.+++
T Consensus 24 ~~~~~~~~~~~l-----~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~-------~~~~~~~~ 90 (226)
T d1ve3a1 24 IETLEPLLMKYM-----KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR-------ESNVEFIV 90 (226)
T ss_dssp HHHHHHHHHHSC-----CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCCEEEE
T ss_pred HHHHHHHHHHhc-----CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccc-------cccccccc
Confidence 334444454433 3668999999999999998887655 6999999999999999987543 23577899
Q ss_pred cCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 219 VPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 219 ~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.|+.++++++++||+|++..+++|+++.++..+++++.++|||||.+++...
T Consensus 91 ~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 91 GDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 9999999988999999999999999988899999999999999999998764
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.88 E-value=3.1e-23 Score=173.93 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=97.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
.+++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+ ..+++++++|++++++++++||+|
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~------~~~i~~~~~d~~~l~~~~~~fD~v 85 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNG------HQQVEYVQGDAEQMPFTDERFHIV 85 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTT------CCSEEEEECCC-CCCSCTTCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccc------cccccccccccccccccccccccc
Confidence 67889999999999999998886654 69999999999999999876544 357899999999999888999999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
+|..++||++ +...+++++.++|||||++++.++..+.
T Consensus 86 ~~~~~l~~~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~ 123 (231)
T d1vl5a_ 86 TCRIAAHHFP--NPASFVSEAYRVLKKGGQLLLVDNSAPE 123 (231)
T ss_dssp EEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEEEEBCS
T ss_pred cccccccccC--CHHHHHHHHHHhcCCCcEEEEEeCCCCC
Confidence 9999999998 6669999999999999999998875543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=2.3e-22 Score=170.54 Aligned_cols=117 Identities=22% Similarity=0.321 Sum_probs=97.7
Q ss_pred HHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc
Q 023288 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (284)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~ 219 (284)
.++..++.... ..++.+|||||||+|..+..+++.+. +|+|||+|+.|++.|++++...+ .++++.++
T Consensus 28 ~~~~~~~~~~~----~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~-------~~i~~~~~ 95 (251)
T d1wzna1 28 DFVEEIFKEDA----KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERN-------LKIEFLQG 95 (251)
T ss_dssp HHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-------CCCEEEES
T ss_pred HHHHHHHHHhc----CCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccccccccccc-------ccchheeh
Confidence 34555444332 44667999999999999999987776 59999999999999999976532 36899999
Q ss_pred CCCCCCCCCCceeEEEec-chhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 220 PLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 220 d~~~~~~~~~~fD~Iv~~-~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+++++++ ++||+|+|. .+++|++.++...+|++++++|||||++++..
T Consensus 96 d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 96 DVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp CGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999877 589999986 58889987889999999999999999999854
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.2e-21 Score=166.08 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=96.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|..+..+++....+|+|||+|+.|++.|+++....++ ..+++|.++|+.++. .+++||+|
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl-----~~~v~~~~~d~~~~~-~~~~fD~v 104 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIHNDAAGYV-ANEKCDVA 104 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCCTTCC-CSSCEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc-----cccchhhhhHHhhcc-ccCceeEE
Confidence 678899999999999999998877656799999999999999999876655 457899999999974 56899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
++..+++|++ +...++++++++|||||++++.+..
T Consensus 105 ~~~~~~~~~~--d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 105 ACVGATWIAG--GFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp EEESCGGGTS--SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred EEEehhhccC--CHHHHHHHHHHHcCcCcEEEEEecc
Confidence 9999999999 5669999999999999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=1.8e-21 Score=164.10 Aligned_cols=111 Identities=22% Similarity=0.331 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~ 218 (284)
...+...+...+ .++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++... .+++
T Consensus 29 ~~~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~~------------~~~~ 90 (246)
T d2avna1 29 HRLIGSFLEEYL-----KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK------------NVVE 90 (246)
T ss_dssp HHHHHHHHHHHC-----CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS------------CEEE
T ss_pred HHHHHHHHHHhc-----CCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccccc------------cccc
Confidence 344455454443 3667999999999999998886655 699999999999999998532 3678
Q ss_pred cCCCCCCCCCCceeEEEec-chhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 219 VPLQDFTPETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 219 ~d~~~~~~~~~~fD~Iv~~-~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++++++++++++||+|++. .++||++ +...+++++.++|||||.++++.
T Consensus 91 ~~~~~l~~~~~~fD~ii~~~~~~~~~~--d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 91 AKAEDLPFPSGAFEAVLALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp CCTTSCCSCTTCEEEEEECSSHHHHCS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccccceeeecchhhhhh--hHHHHHHHHHhhcCcCcEEEEEE
Confidence 8999999988999999985 5899998 55589999999999999999975
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.83 E-value=2.2e-20 Score=156.19 Aligned_cols=113 Identities=14% Similarity=0.257 Sum_probs=94.6
Q ss_pred CCCceEEEeeccccHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~---~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
+++.+|||+|||+|..+..+++.. ..+|+|+|+|+.|++.|+++....+. ..++.+.+.|+.++++ ..+|
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----~~~~~~~~~d~~~~~~--~~~d 110 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEI--KNAS 110 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----SSCEEEECSCTTTCCC--CSEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----cchhhhccchhhcccc--ccce
Confidence 467899999999999999888642 22799999999999999998765432 3567778888877654 5799
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
+|+++.++||++.++...++++++++|||||.|++.|....+.
T Consensus 111 ~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 153 (225)
T d1im8a_ 111 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFED 153 (225)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSS
T ss_pred eeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccccc
Confidence 9999999999998899999999999999999999998765443
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=8.6e-21 Score=155.65 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=94.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|..+..++++++ +|+|+|+|+.|++.++++....+. .++++...|+.++.++ ++||+|++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~d~~~~~~~-~~fD~I~~ 101 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGL------DNLQTDLVDLNTLTFD-GEYDFILS 101 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC------TTEEEEECCTTTCCCC-CCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccc------cchhhhheeccccccc-ccccEEEE
Confidence 456999999999999999998776 599999999999999988765443 4688999999988764 79999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
..++||+++++..++++++.++|+|||.+++...
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999988899999999999999999999764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=2.1e-20 Score=161.30 Aligned_cols=113 Identities=18% Similarity=0.234 Sum_probs=97.2
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
...++.+|||||||+|.++..+++....+|+|+|+|+.+++.|++++...++ ..++.+...|..++ +++||.
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l-----~~~~~~~~~d~~~~---~~~fD~ 120 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWEDF---AEPVDR 120 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGGC---CCCCSE
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcc-----ccchhhhhhhhhhh---ccchhh
Confidence 3788999999999999999988877556899999999999999999887665 34567777776654 368999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (284)
|++..+++|++.+++..+++++.++|||||.+++.+.+..+
T Consensus 121 i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~ 161 (280)
T d2fk8a1 121 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 161 (280)
T ss_dssp EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred hhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccC
Confidence 99999999999888899999999999999999998755443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.82 E-value=4.7e-21 Score=162.34 Aligned_cols=116 Identities=20% Similarity=0.323 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~ 218 (284)
..++...+... ..++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++.... ..++++++
T Consensus 24 ~~~~~~~~~~~-----~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~-------~~~v~~~~ 90 (246)
T d1y8ca_ 24 SDFIIEKCVEN-----NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQ-------GLKPRLAC 90 (246)
T ss_dssp HHHHHHHHHTT-----TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHT-------TCCCEEEC
T ss_pred HHHHHHHHHHh-----CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhcccccccc-------Cccceeec
Confidence 34555555432 23567999999999999999987766 5999999999999999987653 24689999
Q ss_pred cCCCCCCCCCCceeEEEec-chhccC-ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 219 VPLQDFTPETGRYDVIWVQ-WCIGHL-TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 219 ~d~~~~~~~~~~fD~Iv~~-~~l~~~-~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|+.+++++ ++||+|+|. .+++|+ +.+++..++++++++|||||.|++.
T Consensus 91 ~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 91 QDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cchhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 999988765 689999986 578877 4567889999999999999999974
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.81 E-value=4.7e-20 Score=156.82 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=92.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC-CCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~fD~I 234 (284)
.++.+|||+|||+|..+..++..++.+|+|+|+|+.|++.|+++....+. ..++.+.++|+...++ .+++||+|
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----~~~v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----CcceEEEEcchhhhcccccccceEE
Confidence 47789999999999999989887877899999999999999998765432 3578999999977664 35689999
Q ss_pred EecchhccC--ChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~--~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|.+++||+ +.+++..+++++.++|||||+|++.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 999999997 3456789999999999999999985
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.81 E-value=2.8e-20 Score=151.39 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=96.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCC------CCCCcceeEEEcCCCCCCC-C
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA------PDMHKATNFFCVPLQDFTP-E 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~------~~~~~~~~~~~~d~~~~~~-~ 227 (284)
..++.+|||+|||+|+.+..|+++++. |+|+|+|+.|++.|+++.+..+... .......+++++|+.+++. .
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 568899999999999999999988885 9999999999999999986532210 0012346788899888763 3
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
..+||+|++..+++|+++++...++++++++|||||.+++....
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 46899999999999999888999999999999999998887543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=9.4e-20 Score=157.35 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC 218 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~ 218 (284)
.....+.+...+. ..++.+|||||||+|..+.++++....+|+|+++|+.+++.|+++....++ ..++++..
T Consensus 47 Q~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~-----~~~v~~~~ 118 (285)
T d1kpga_ 47 QIAKIDLALGKLG---LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLL 118 (285)
T ss_dssp HHHHHHHHHTTTT---CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEE
T ss_pred HHHHHHHHHHHcC---CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh-----hhhhHHHH
Confidence 3333344444444 789999999999999999998887767899999999999999999877665 46788999
Q ss_pred cCCCCCCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 219 VPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 219 ~d~~~~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
.|..+++ ++||.|++.++++|+...+...+++++.++|||||.+++...+
T Consensus 119 ~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 119 AGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp SCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 9987764 6899999999999998778889999999999999999997654
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=1.1e-19 Score=157.25 Aligned_cols=126 Identities=15% Similarity=0.128 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
.........+...+. ..++.+|||||||+|.++..+++....+|+|+++|+++++.+++++...++ ...+.+
T Consensus 44 ~Aq~~k~~~~~~~l~---l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l-----~~~v~~ 115 (291)
T d1kpia_ 44 EAQYAKRKLALDKLN---LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----PRRKEV 115 (291)
T ss_dssp HHHHHHHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCC-----SSCEEE
T ss_pred HHHHHHHHHHHHhcC---CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhcc-----chhhhh
Confidence 333333333444444 789999999999999999999887667899999999999999999887665 355777
Q ss_pred EEcCCCCCCCCCCceeEEEecchhccCCh-------hhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 217 ~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~-------~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
...|.. ..+++||.|+|..+++|+++ +++..+++++.++|||||++++...+.+
T Consensus 116 ~~~d~~---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 116 RIQGWE---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp EECCGG---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred hhhccc---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence 777754 34579999999999999985 3578999999999999999999876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.6e-20 Score=154.92 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=85.1
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+..+|||||||+|.++..+. +++|+|+|+.|++.|+++ ++.+.++|++++++++++||+|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------------~~~~~~~d~~~l~~~~~~fD~I~~ 97 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDFALM 97 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------------cccccccccccccccccccccccc
Confidence 45689999999999988663 479999999999999874 367999999999988899999999
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
..+++|++ ++..+++++.++|+|||.+++.+...
T Consensus 98 ~~~l~h~~--d~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 98 VTTICFVD--DPERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp ESCGGGSS--CHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cccccccc--ccccchhhhhhcCCCCceEEEEecCC
Confidence 99999998 66799999999999999999987543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.80 E-value=9.7e-20 Score=157.37 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=92.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||||||+|.++..++.... .+|+|+|+|+.|++.|+++.... ..+++|.+.|+.+++++ ++||
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~-------~~~~~f~~~d~~~~~~~-~~fD 96 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-------PYDSEFLEGDATEIELN-DKYD 96 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS-------SSEEEEEESCTTTCCCS-SCEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc-------ccccccccccccccccc-CCce
Confidence 56778999999999999998775433 27999999999999999998764 24689999999998875 5899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+|++..++||++ +...+++++.++|||||.+++.|.
T Consensus 97 ~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 97 IAICHAFLLHMT--TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp EEEEESCGGGCS--SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEEehhhhcCC--CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 999999999999 556999999999999999999884
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8.3e-20 Score=153.12 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=101.3
Q ss_pred HHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC-----------CC
Q 023288 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-----------AP 208 (284)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~-----------~~ 208 (284)
..+...+...+. ..++.+|||+|||+|..+..|++.++. |+|||+|+.+|+.|+++....+.. ..
T Consensus 31 ~~l~~~~~~~l~---~~~~~rvLd~GCG~G~~a~~LA~~G~~-V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (229)
T d2bzga1 31 QLLKKHLDTFLK---GKSGLRVFFPLCGKAVEMKWFADRGHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK 106 (229)
T ss_dssp HHHHHHHHHHHT---TCCSCEEEETTCTTCTHHHHHHHTTCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred HHHHHHHHHhcC---CCCCCEEEEeCCCCcHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHhhccccccchhcccccceee
Confidence 444444444433 567889999999999999999988874 999999999999999887542110 01
Q ss_pred CCCcceeEEEcCCCCCC-CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 209 DMHKATNFFCVPLQDFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 209 ~~~~~~~~~~~d~~~~~-~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+++++++|+.+++ ...+.||+|+...++||+++++...+++++.++|||||.+++...
T Consensus 107 ~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 107 SSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp ETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 11346889999998875 446799999999999999999999999999999999999887643
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.78 E-value=2.8e-19 Score=149.41 Aligned_cols=99 Identities=23% Similarity=0.295 Sum_probs=86.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++.. .++.+..+++.+++++ ++||+|++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~----------~~~~~~~~~~~~~~~~-~~fD~I~~ 87 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK----------DGITYIHSRFEDAQLP-RRYDNIVL 87 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC----------SCEEEEESCGGGCCCS-SCEEEEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc----------cccccccccccccccc-cccccccc
Confidence 567899999999999998876655 59999999999999998864 3588999999887764 79999999
Q ss_pred cchhccCChhhHHHHHHHHH-hcCCCCcEEEEEe
Q 023288 237 QWCIGHLTDDDFVSFFKRAK-VGLKPGGFFVLKE 269 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~-r~LkpGG~lii~e 269 (284)
..+++|++ +...+++++. ++|||||.+++.-
T Consensus 88 ~~vleh~~--d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 88 THVLEHID--DPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp ESCGGGCS--SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cceeEecC--CHHHHHHHHHHHhcCCCceEEEEe
Confidence 99999998 5669999998 7999999999974
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.75 E-value=2e-18 Score=146.82 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=94.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
..+..+|||||||+|.++..++++++. +++++|+ +.+++.+++++...++ ..+++++.+|+.+.. +.+||+
T Consensus 78 ~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~rv~~~~~D~~~~~--~~~~D~ 149 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGDFFEPL--PRKADA 149 (253)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECCTTSCC--SSCEEE
T ss_pred CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc-----ccchhhccccchhhc--ccchhh
Confidence 456679999999999999999988765 7999998 6799999998876554 467999999986532 357999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
|++.+++||+++++...+|++++++|||||.|+|.|...
T Consensus 150 v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 150 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred eeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 999999999998888899999999999999999998654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=8.1e-19 Score=147.05 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=84.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--CCCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~ 233 (284)
.++.+|||||||+|..+..+++..+.+|++||+|+.|++.|++++... ..++.++..++... .+++++||.
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~fD~ 124 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ-------THKVIPLKGLWEDVAPTLPDGHFDG 124 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-------SSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhc-------ccccccccccccccccccccccccc
Confidence 467899999999999999888666568999999999999999998654 24566676665433 355678999
Q ss_pred EE-----ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 234 IW-----VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 234 Iv-----~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+ +...++|+. +...++++++|+|||||+|++.+
T Consensus 125 i~fD~~~~~~~~~~~~--~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 125 ILYDTYPLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp EEECCCCCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECC
T ss_pred eeeccccccccccccc--CHHHHHHHHHHHcCCCcEEEEEe
Confidence 87 466777776 66699999999999999998854
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2.9e-18 Score=147.04 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=84.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
+.++.+|||||||+|.++..+++.+.. +++|+|+|+.|++.|+++. .++.+.++|+.++++++++||+
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----------~~~~~~~~d~~~l~~~~~sfD~ 150 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMDA 150 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----------ccccceeeehhhccCCCCCEEE
Confidence 356789999999999999999877654 7999999999999999874 3588999999999999999999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|++.++++| ++++.|+|||||.++++..
T Consensus 151 v~~~~~~~~---------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 151 IIRIYAPCK---------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp EEEESCCCC---------HHHHHHHEEEEEEEEEEEE
T ss_pred EeecCCHHH---------HHHHHHHhCCCcEEEEEee
Confidence 999888776 4678999999999999865
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=5.8e-18 Score=137.31 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=90.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
+.++.+|||+|||+|.++..++.. ..+|+++|+|+.|++.|+++++..++ ..+++++++|+.+...+...||+|
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl-----~~~v~~~~gda~~~~~~~~~~D~v 104 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLMEGDAPEALCKIPDIDIA 104 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCC-----CcceEEEECchhhcccccCCcCEE
Confidence 678999999999999999988755 45799999999999999999887665 468999999988776666799999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++....++ ...+++.+.+.|||||++++...
T Consensus 105 ~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 105 VVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEeCcccc-----chHHHHHHHHHhCcCCEEEEEee
Confidence 99877654 44789999999999999988653
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.71 E-value=2.1e-17 Score=134.84 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=89.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++++...++. ..++++..+|+.+ ..++++||+|
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~----~~~i~~~~~d~~~-~~~~~~fD~I 123 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLD----NYDIRVVHSDLYE-NVKDRKYNKI 123 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCT----TSCEEEEECSTTT-TCTTSCEEEE
T ss_pred cCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCc----cceEEEEEcchhh-hhccCCceEE
Confidence 567889999999999999988754 457999999999999999988765442 2457899999876 4556899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+++.++|+.. +....+++++.++|||||.+++..
T Consensus 124 i~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 124 ITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEEE
Confidence 9998887654 345689999999999999988753
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.70 E-value=3e-17 Score=139.68 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=94.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 233 (284)
.....+|||||||+|.++..++++++. +++++|+ +.+++.+++++...+. ..++.+...|+.+ +.+ .+||+
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~-----~~ri~~~~~d~~~-~~p-~~~D~ 150 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGDFFK-PLP-VTADV 150 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-CCS-CCEEE
T ss_pred CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC-----cceeeeeeeeccc-ccc-ccchh
Confidence 345679999999999999999988776 8999997 7899999998876554 4578888888865 333 46999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
|++.+++|++++++...+|++++++|||||+|+|.|.+.
T Consensus 151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~ 189 (256)
T d1qzza2 151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRAD 189 (256)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEecc
Confidence 999999999999888999999999999999999999754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.3e-18 Score=144.34 Aligned_cols=133 Identities=16% Similarity=0.056 Sum_probs=92.9
Q ss_pred HHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCC---------
Q 023288 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM--------- 210 (284)
Q Consensus 140 ~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~--------- 210 (284)
.++...+.+.+.. ...++.+|||||||+|..+..++..++.+|+|+|+|+.|++.|++++...+......
T Consensus 35 ~~~~~~~~~~~~~-~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 113 (257)
T d2a14a1 35 KFNLECLHKTFGP-GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL 113 (257)
T ss_dssp HHHHHHHHHHHST-TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHh
Confidence 3444444444332 245678999999999999887776777689999999999999999876543211000
Q ss_pred --------------Ccce-eEEEc----CCCCCCCCCCceeEEEecchhccCCh--hhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 211 --------------HKAT-NFFCV----PLQDFTPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 211 --------------~~~~-~~~~~----d~~~~~~~~~~fD~Iv~~~~l~~~~~--~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+ ..... +....+.+.++||+|++.+++||++. +++..+++++.++|||||.+++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~ 193 (257)
T d2a14a1 114 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193 (257)
T ss_dssp TTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence 0000 11111 11122456789999999999999863 467889999999999999999987
Q ss_pred ccCC
Q 023288 270 NIAR 273 (284)
Q Consensus 270 ~~~~ 273 (284)
....
T Consensus 194 ~~~~ 197 (257)
T d2a14a1 194 TLRL 197 (257)
T ss_dssp ESSC
T ss_pred eccc
Confidence 6543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=9.4e-17 Score=138.04 Aligned_cols=126 Identities=15% Similarity=0.189 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCc-cCCCCceEEEeeccccHHHHHHHHh----CCC---cEEEEeCCHHHHHHHHHHcCCCCCCCCCCC
Q 023288 140 AFLQMLLSDRFPNA-RNNQHLVALDCGSGIGRITKNLLIR----YFN---EVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (284)
Q Consensus 140 ~~l~~~~~~~l~~~-~~~~~~~VLDiGcGtG~~s~~l~~~----~~~---~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~ 211 (284)
.++...+...+... ..++..+|||||||+|.++..++.. +.. .++|||+|+.|++.+++++...... ..
T Consensus 22 ~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~---~~ 98 (280)
T d1jqea_ 22 EFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL---EN 98 (280)
T ss_dssp HHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC---TT
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc---cc
Confidence 34444444433321 1344568999999999998877653 222 6899999999999999997653210 01
Q ss_pred cceeEEEcCCCC------CCCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 212 KATNFFCVPLQD------FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 212 ~~~~~~~~d~~~------~~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
...++.+.++++ .+.++++||+|++..++||++ ++..+++++.++|+|||.+++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 99 VKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK--DIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp EEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCS--CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccchhhhhhhhcchhcccCCCCceeEEEEccceecCC--CHHHHHHHHHhhCCCCCEEEEEEe
Confidence 223444444432 234568999999999999998 667999999999999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=2e-17 Score=143.34 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=81.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC---CCCCcee
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD 232 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~fD 232 (284)
.++.+|||+|||+|..+..|++.+. +|+|+|+|+.||+.|+++....+.... .....+...++..+. +..++||
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPA--FDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHH--HHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccc--cceeeeeeccccccccccCCCCCce
Confidence 3567999999999999999998876 599999999999999988654322100 012334444443221 2246899
Q ss_pred EEEecc-hhccCCh-----hhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQW-CIGHLTD-----DDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~-~l~~~~~-----~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++.+ +++|+++ ++...++++++++|||||+|++.
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 999764 8999864 35778999999999999999985
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.67 E-value=1.7e-16 Score=132.61 Aligned_cols=114 Identities=12% Similarity=-0.032 Sum_probs=92.4
Q ss_pred hcCCccCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-C
Q 023288 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-P 226 (284)
Q Consensus 149 ~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 226 (284)
.+......++.+|||+|||+|..+..+++.+.. .|+|+|+|+.|++.++++... ..++..+..|..... +
T Consensus 66 gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~--------~~ni~~i~~d~~~~~~~ 137 (230)
T d1g8sa_ 66 GLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE--------RENIIPILGDANKPQEY 137 (230)
T ss_dssp TCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT--------CTTEEEEECCTTCGGGG
T ss_pred hHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh--------hcccceEEEeeccCccc
Confidence 344445789999999999999999999976544 799999999999999999776 456777887776653 4
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.+..+|++++...+++.. +...+++++.+.|||||.+++++...
T Consensus 138 ~~~~~~v~~i~~~~~~~~--~~~~~l~~~~r~LKpgG~~~i~~k~~ 181 (230)
T d1g8sa_ 138 ANIVEKVDVIYEDVAQPN--QAEILIKNAKWFLKKGGYGMIAIKAR 181 (230)
T ss_dssp TTTCCCEEEEEECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ccccceeEEeeccccchH--HHHHHHHHHHHhcccCceEEEEeecc
Confidence 456788888777788776 66689999999999999999986543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.2e-17 Score=139.27 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=87.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCC--C----------------------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPD--M---------------------- 210 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~--~---------------------- 210 (284)
..++.+|||||||+|..+...+.+.+.+|+|+|+|+.|++.+++++...+....- .
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 4567899999999998876566677778999999999999999987653211000 0
Q ss_pred CcceeEEEcCCCCC------CCCCCceeEEEecchhccCCh--hhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 211 HKATNFFCVPLQDF------TPETGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 211 ~~~~~~~~~d~~~~------~~~~~~fD~Iv~~~~l~~~~~--~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
........+|+..- +.++++||+|++.+++||++. +++..+++++.++|||||.|++.+....
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~ 202 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE 202 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence 00112334455432 234568999999999999863 4688999999999999999999875443
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=3.9e-17 Score=138.38 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=83.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++++..++ ++++.++|+.+. .+.++||+|
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~-------~~~~~~~d~~~~-~~~~~fD~V 188 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGV-------RPRFLEGSLEAA-LPFGPFDLL 188 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTC-------CCEEEESCHHHH-GGGCCEEEE
T ss_pred cCccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCC-------ceeEEecccccc-ccccccchh
Confidence 3478899999999999999877655 4699999999999999999876543 467888887653 345789999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+++...+ .+..++.++.++|||||++++++.
T Consensus 189 ~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 189 VANLYAE-----LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp EEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccccc-----cHHHHHHHHHHhcCCCcEEEEEec
Confidence 9976544 456789999999999999999864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=3.6e-16 Score=129.25 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=84.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
.+++.+|||||||+|..+..+++.... .|+++|+++.+++.|++++...+. .++.+.++|..+..+.+++||
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------~n~~~~~~d~~~~~~~~~~fD 146 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYD 146 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEE
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------cccccccCchHHccccccchh
Confidence 678999999999999999988765433 799999999999999999876543 568888999887766678999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++..+++++++ ++.+.|||||++++.
T Consensus 147 ~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 147 VIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp EEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred hhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 9999999999872 356779999999885
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.62 E-value=4.5e-16 Score=128.22 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=83.0
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCC---
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG--- 229 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--- 229 (284)
..+++.+|||+|||+|..+..+++.... +|+|+|+|+.|++.++++... ..++.++..|.........
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~--------~~ni~~i~~d~~~~~~~~~~~~ 124 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGIVE 124 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTTCC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc--------cCCceEEEeeccCccccccccc
Confidence 4788999999999999999988875543 799999999999999998765 3578899999887643333
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+|+|+. .+.|.. +...+++++.++|||||.+++.+.
T Consensus 125 ~vd~v~~--~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 125 KVDLIYQ--DIAQKN--QIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp CEEEEEE--CCCSTT--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEEe--cccChh--hHHHHHHHHHHHhccCCeEEEEEE
Confidence 3444443 344544 566899999999999999999763
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.61 E-value=6.3e-16 Score=126.76 Aligned_cols=106 Identities=12% Similarity=0.240 Sum_probs=89.3
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (284)
....|||||||+|..+..+++..+. .++|+|+++.++..|.++....++ .|+.++++|+..+. ++++++|.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l------~Nv~~~~~Da~~l~~~~~~~~~d~ 102 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEVKR 102 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc------cCchhcccchhhhhcccCchhhhc
Confidence 3457999999999999999988766 899999999999999998876554 57999999988764 67889999
Q ss_pred EEecchhccCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++.+...+..... ...+++.++++|||||.|+|.
T Consensus 103 v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 103 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred cccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 99988877755332 147999999999999999886
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.8e-15 Score=131.66 Aligned_cols=119 Identities=14% Similarity=0.014 Sum_probs=88.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCC---CCCCCcceeEEEcCCCCCCCCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFTPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~ 230 (284)
.+++.+|||+|||+|..+..++..... +++|+|+|+.|++.|+++....... .+....+++++++|+.+.++.+..
T Consensus 149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~ 228 (328)
T d1nw3a_ 149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI 228 (328)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence 678899999999999999988876544 7999999999999998764321000 000034689999999887655433
Q ss_pred --eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCc
Q 023288 231 --YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGT 276 (284)
Q Consensus 231 --fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (284)
+|+|+++. +.|.+ ++...++++.+.|||||.+++.+...+.++
T Consensus 229 ~~advi~~~~-~~f~~--~~~~~l~e~~r~LKpGg~iv~~~~~~~~~~ 273 (328)
T d1nw3a_ 229 ANTSVIFVNN-FAFGP--EVDHQLKERFANMKEGGRIVSSKPFAPLNF 273 (328)
T ss_dssp HHCSEEEECC-TTTCH--HHHHHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred CcceEEEEcc-eecch--HHHHHHHHHHHhCCCCcEEEEecccCCCCc
Confidence 46777654 44544 777999999999999999999876554443
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=1.9e-15 Score=128.16 Aligned_cols=106 Identities=17% Similarity=0.126 Sum_probs=87.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..|++... . +|+++|+++++++.|++++..... ....++.+.+.|+.+.++++++||
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~---~~~~nv~~~~~d~~~~~~~~~~fD 170 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---QPPDNWRLVVSDLADSELPDGSVD 170 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---SCCTTEEEECSCGGGCCCCTTCEE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc---CCCceEEEEecccccccccCCCcc
Confidence 67999999999999999999987633 3 799999999999999998753210 013578999999998888889999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.|++ +++++ ..++.++.++|||||.+++...
T Consensus 171 aV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 171 RAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp EEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred eEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeC
Confidence 9985 56744 4899999999999999998654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=2.4e-15 Score=132.14 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=88.1
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|.++..+++.+..+|+++|.|+ +++.|+++....+. ..++.++.+++.++++++.+||+|++
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~-----~~~i~~i~~~~~~l~~~~~~~D~i~s 111 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGF-----SDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCc-----cccceEEEeehhhccCcccceeEEEE
Confidence 5789999999999999988877777999999996 77888887766554 46789999999999988889999999
Q ss_pred cchhccCChh-hHHHHHHHHHhcCCCCcEEE
Q 023288 237 QWCIGHLTDD-DFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 237 ~~~l~~~~~~-~~~~~l~~~~r~LkpGG~li 266 (284)
..+.+++..+ .+..++..+.++|||||.++
T Consensus 112 e~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 8877766543 47788999999999999886
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.57 E-value=4.8e-15 Score=124.87 Aligned_cols=104 Identities=16% Similarity=0.199 Sum_probs=85.3
Q ss_pred cCCCCceEEEeeccccHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCce
Q 023288 154 RNNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (284)
Q Consensus 154 ~~~~~~~VLDiGcGtG~~s~~l~~~~-~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 231 (284)
...++.+|||+|||+|.++..+++.. .. +|+++|+++.+++.|++++...+. ..++++...|+.+.. ++++|
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----~~nv~~~~~Di~~~~-~~~~f 155 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDIADFI-SDQMY 155 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCTTTCC-CSCCE
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----CCceEEEEeeeeccc-cccee
Confidence 37789999999999999999888753 32 799999999999999999876432 367999999998864 45789
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|.|++. ++ +...++.++.++|||||+|++...
T Consensus 156 D~V~ld-----~p--~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 156 DAVIAD-----IP--DPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp EEEEEC-----CS--CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred eeeeec-----CC--chHHHHHHHHHhcCCCceEEEEeC
Confidence 999863 45 333789999999999999998643
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=3.9e-15 Score=130.16 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=86.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
++.+|||||||+|.++..+++.+..+|+++|.|+.+ ..+++.....++ ..++.++++++.+++.+.++||+|++
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~-----~~~v~~~~~~~~~~~~~~~~~D~ivs 106 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKL-----DHVVTIIKGKVEEVELPVEKVDIIIS 106 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTC-----TTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCC-----ccccceEeccHHHcccccceeEEEee
Confidence 567899999999999998887777789999999865 556665554443 45799999999999888889999999
Q ss_pred cchhccCChh-hHHHHHHHHHhcCCCCcEEEE
Q 023288 237 QWCIGHLTDD-DFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 237 ~~~l~~~~~~-~~~~~l~~~~r~LkpGG~lii 267 (284)
..+.+++..+ .+..++..+.++|||||.++-
T Consensus 107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 107 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 8887776544 478899999999999998873
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.55 E-value=1.1e-14 Score=119.20 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=86.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~ 233 (284)
....|||||||+|.++..+++..+. .++|+|+++.++..|.++....++ .|+.+..+|+.++. ++++++|.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l------~Ni~~~~~da~~l~~~~~~~~~~~ 104 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEIDR 104 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCCSE
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc------ccceeeecCHHHHhhhccCCceeh
Confidence 3457999999999999999988766 799999999999999888776543 57999999998864 66789999
Q ss_pred EEecchhccCChhh------HHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~------~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++.+.-.+..... ...+++.+.++|||||.|++.
T Consensus 105 i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 105 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred hcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 99877654433211 157999999999999999885
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.4e-15 Score=125.05 Aligned_cols=106 Identities=20% Similarity=0.182 Sum_probs=84.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||||||+|+.+..+++... . +|+++|+++++++.|++++...+..+.. ..++.+..+|.....++.++||
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~-~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS-SGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHH-TSSEEEEESCGGGCCGGGCCEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccc-ccceEEEEeecccccchhhhhh
Confidence 56889999999999999987765422 2 7999999999999999987653321111 2467888999887777778999
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|++..+++++++ .+.+.|||||++++.-
T Consensus 153 ~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 153 AIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp EEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred hhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence 9999999998872 3668899999999853
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.53 E-value=1.6e-14 Score=119.73 Aligned_cols=97 Identities=21% Similarity=0.140 Sum_probs=81.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|+++..++.. ..+|+++|+++.+++.|++++.. ..++.+..+|......+.++||.|
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~--------~~nv~~~~~d~~~g~~~~~pfD~I 138 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSY--------YNNIKLILGDGTLGYEEEKPYDRV 138 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTT--------CSSEEEEESCGGGCCGGGCCEEEE
T ss_pred hcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhc--------ccccccccCchhhcchhhhhHHHH
Confidence 678899999999999999966654 55799999999999999998876 467999999987654556789999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++..++.++++ .+.+.|||||+|++.
T Consensus 139 iv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 139 VVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 99999888872 245789999999885
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.2e-14 Score=125.00 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=85.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||||||+|.++..+++.+..+|+++|.|+.|....+ .....+. ..++.++.+++.+++.++.+||+|+
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~-~~~~~~~-----~~~i~~~~~~~~~l~~~~~~~D~Iv 107 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMD-IIRLNKL-----EDTITLIKGKIEEVHLPVEKVDVII 107 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHH-HHHHTTC-----TTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHH-HHHHhCC-----CccceEEEeeHHHhcCccccceEEE
Confidence 467899999999999999888777778999999999875443 3333222 4679999999999988888999999
Q ss_pred ecchhccCChhh-HHHHHHHHHhcCCCCcEEEE
Q 023288 236 VQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~~~~~~~-~~~~l~~~~r~LkpGG~lii 267 (284)
+....+++..+. +..++....++|||||.++-
T Consensus 108 se~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 108 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 988877765443 66778888899999999874
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=3.5e-14 Score=117.97 Aligned_cols=110 Identities=15% Similarity=0.062 Sum_probs=85.7
Q ss_pred hcCCccCCCCceEEEeeccccHHHHHHHHhCC-C-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC--
Q 023288 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-- 224 (284)
Q Consensus 149 ~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 224 (284)
.+......++.+|||+|||+|..+..+++... . .|+++|+|+.|++.++++++. ..++..+..|....
T Consensus 65 ~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~--------~~~~~~i~~d~~~~~~ 136 (227)
T d1g8aa_ 65 GLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE--------RRNIVPILGDATKPEE 136 (227)
T ss_dssp TCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS--------CTTEEEEECCTTCGGG
T ss_pred cccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh--------cCCceEEEEECCCccc
Confidence 34444578999999999999999999987632 2 799999999999999999876 34566777776543
Q ss_pred -CCCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 225 -TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 225 -~~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
+.....+|+|++. +.+.. +...+++++.+.|||||.++++..
T Consensus 137 ~~~~~~~vD~i~~d--~~~~~--~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 137 YRALVPKVDVIFED--VAQPT--QAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp GTTTCCCEEEEEEC--CCSTT--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccceEEEEEE--ccccc--hHHHHHHHHHHhcccCCeEEEEEE
Confidence 3344678988864 33434 556899999999999999998753
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=6e-14 Score=119.33 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=83.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||+|||+|.++..+++...+ +|+++|+++.+++.|++++...++ ..++.+...|+.. .++...||
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----~~~v~~~~~d~~~-~~~~~~~D 174 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDISE-GFDEKDVD 174 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGGG-CCSCCSEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----ccCcEEEeccccc-ccccccee
Confidence 779999999999999999999876432 799999999999999999887654 4567777777644 23446799
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.|+. +++ +...+++++.++|||||.+++...
T Consensus 175 ~V~~-----d~p--~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 175 ALFL-----DVP--DPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp EEEE-----CCS--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred eeEe-----cCC--CHHHHHHHHHhhcCCCCEEEEEeC
Confidence 8864 566 444899999999999999998643
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=5.2e-14 Score=125.94 Aligned_cols=129 Identities=14% Similarity=0.036 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCC----CCCCCcc
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM----APDMHKA 213 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~----~~~~~~~ 213 (284)
..++..++... ..+++.+|||||||+|..+..++.... .+++|||+|+.|++.|+++....+.. ... ...
T Consensus 202 ~~~i~~Il~~l----~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~-~~~ 276 (406)
T d1u2za_ 202 PNFLSDVYQQC----QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNN 276 (406)
T ss_dssp HHHHHHHHHHT----TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCC
T ss_pred HHHHHHHHHHh----CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccc-ccc
Confidence 34555555432 267889999999999999998887644 47999999999999999876431100 000 011
Q ss_pred eeE-EEcCCCCCCCC---CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCC
Q 023288 214 TNF-FCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (284)
Q Consensus 214 ~~~-~~~d~~~~~~~---~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (284)
..+ ..+++.+.+.. -..+|+|+++. ++|.+ ++...++++.+.|||||.|++.+...+.+
T Consensus 277 ~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~--~l~~~L~ei~r~LKPGGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 277 VEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDE--DLNKKVEKILQTAKVGCKIISLKSLRSLT 339 (406)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCH--HHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ceeeeeechhhccccccccccceEEEEec-ccCch--HHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence 222 23333322110 12578888764 34444 78899999999999999999988655443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.9e-13 Score=117.17 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=81.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCC-----CCCCCCcceeEEEcCCCCCC--
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENH-----MAPDMHKATNFFCVPLQDFT-- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~-- 225 (284)
..++.+|||+|||+|.++..|++...+ +|+++|+++.+++.|++++...+. .......++++...|+.+..
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 678999999999999999999876433 799999999999999998753210 00112457899999998764
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+..+||.|+. .++++. .++.++.++|||||.|++.-
T Consensus 176 ~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 176 IKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp -----EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEEE
T ss_pred cCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEEe
Confidence 34578999986 345333 78999999999999999854
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=3.9e-13 Score=114.43 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=83.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..+.+|||+|||+|..+..++...+. +|+++|+|+.+++.|++++...++ .+++++++|+.+. ..+.+||+|
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~------~~v~~~~~d~~~~-~~~~~fDlI 179 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFSA-LAGQQFAMI 179 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTGG-GTTCCEEEE
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc------ccceeeecccccc-cCCCceeEE
Confidence 45678999999999999999887665 899999999999999999876543 4689999998763 344699999
Q ss_pred Eecchhc-------------cCCh----------hhHHHHHHHHHhcCCCCcEEEE
Q 023288 235 WVQWCIG-------------HLTD----------DDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 235 v~~~~l~-------------~~~~----------~~~~~~l~~~~r~LkpGG~lii 267 (284)
+++...- |-|. .....+++.+.+.|+|||.+++
T Consensus 180 vsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l 235 (274)
T d2b3ta1 180 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL 235 (274)
T ss_dssp EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 9984421 1110 1256788999999999999998
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.40 E-value=3.5e-13 Score=110.81 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=83.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|+.+..++.....+|+++|.++.+++.|++++...+. .|+.+.++|......+.++||.|
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~------~nv~~~~gd~~~g~~~~~pfD~I 149 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGSKGFPPKAPYDVI 149 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEE
T ss_pred cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC------ceeEEEECccccCCcccCcceeE
Confidence 678899999999999999966644334699999999999999999887653 68999999988766667899999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++..++.+++ + . +...|+|||++++.
T Consensus 150 iv~~a~~~ip--~--~----l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 150 IVTAGAPKIP--E--P----LIEQLKIGGKLIIP 175 (215)
T ss_dssp EECSBBSSCC--H--H----HHHTEEEEEEEEEE
T ss_pred EeecccccCC--H--H----HHHhcCCCCEEEEE
Confidence 9999999887 3 2 45679999999985
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.35 E-value=2.7e-13 Score=114.83 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++..+++ ..+++++++|+.++..+ +.||.|+
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l-----~~~v~~~~~D~~~~~~~-~~~D~Ii 179 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFPGE-NIADRIL 179 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC-----CceEEEEEcchHHhccC-CCCCEEE
Confidence 47889999999999999999988766899999999999999999987765 35689999999887654 6899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
+...- .-..++..+.+.|+|||++.+.+++
T Consensus 180 ~~~p~------~~~~~l~~a~~~l~~gG~lh~~~~~ 209 (260)
T d2frna1 180 MGYVV------RTHEFIPKALSIAKDGAIIHYHNTV 209 (260)
T ss_dssp ECCCS------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ECCCC------chHHHHHHHHhhcCCCCEEEEEecc
Confidence 86431 1225778888999999999776654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.35 E-value=4.8e-13 Score=116.97 Aligned_cols=111 Identities=13% Similarity=0.061 Sum_probs=87.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~f 231 (284)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++..+|+ ..+++++++|+.++ .....+|
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl-----~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC-----CccceeeechhhhhhHHHHhccCCC
Confidence 46789999999999999998878777899999999999999999988765 45788999987653 1234689
Q ss_pred eEEEecchhccCChh-------hHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDD-------DFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~-------~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|++.......... +...++..+.++|+|||.|+++.+.
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999986543222211 2456888999999999999997653
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.33 E-value=4e-12 Score=102.91 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=79.3
Q ss_pred CCCceEEEeeccccHHH----HHHHHhC----CC-cEEEEeCCHHHHHHHHHHc------------------CCCCCC--
Q 023288 156 NQHLVALDCGSGIGRIT----KNLLIRY----FN-EVDLLEPVSHFLDAARESL------------------APENHM-- 206 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s----~~l~~~~----~~-~v~gvD~S~~~l~~ar~~~------------------~~~~~~-- 206 (284)
.++.+|+++|||+|.-. ..+.+.. .. +++|+|+|+.+++.|++-. ...+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 46689999999999743 3233221 11 6999999999999998422 110000
Q ss_pred -----CCCCCcceeEEEcCCCCCC-CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 207 -----APDMHKATNFFCVPLQDFT-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 207 -----~~~~~~~~~~~~~d~~~~~-~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.......+.+...+..... ...+.||+|+|.++|.|++++....+++++++.|+|||+|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0001122445555554432 3457899999999999999988899999999999999999986
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.33 E-value=1.2e-12 Score=109.77 Aligned_cols=102 Identities=15% Similarity=0.213 Sum_probs=84.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
....+|||||||+|.++..++++++. +++.+|+ |..++. ... ..++++..+|+.+. .+ ..|+|
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~----~~~--------~~ri~~~~gd~~~~-~p--~~D~~ 143 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN----APP--------LSGIEHVGGDMFAS-VP--QGDAM 143 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT----CCC--------CTTEEEEECCTTTC-CC--CEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc----cCC--------CCCeEEecCCcccc-cc--cceEE
Confidence 45578999999999999999998877 8999997 444431 111 35799999998653 22 46999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
++.+++|+.++++...+|+++++.|+|||.++|.|.+.+
T Consensus 144 ~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~ 182 (244)
T d1fp1d2 144 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182 (244)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred EEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence 999999999999999999999999999999999997654
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.33 E-value=3.5e-13 Score=105.12 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=82.8
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~Iv 235 (284)
++.+|||+|||+|.++...+.++..+|+++|.++.+++.+++++...+. ..+++++++|+..+ ....++||+|+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~-----~~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc-----ccchhhhcccccccccccccccceeE
Confidence 5789999999999999999989888999999999999999999987654 45689999998764 23457899999
Q ss_pred ecchhccCChhhHHHHHHHHH--hcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~--r~LkpGG~lii~ 268 (284)
+...... ......+..+. +.|+|||.+++.
T Consensus 89 ~DPPy~~---~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 89 LDPPYAK---ETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp ECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echhhcc---chHHHHHHHHHHCCCcCCCeEEEEE
Confidence 8754321 23445666554 579999998874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.31 E-value=4.1e-13 Score=111.13 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=80.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHh----CC---CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR----YF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~----~~---~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 227 (284)
.+++.+|||||||+|+.+..++.- +. .+|+++|+++++++.|+++....+..... ..++.+..+|..+...+
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~-~~nv~~~~~d~~~~~~~ 156 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD-SGQLLIVEGDGRKGYPP 156 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH-HTSEEEEESCGGGCCGG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcC-ccEEEEEeccccccccc
Confidence 568899999999999999866542 11 26999999999999998875431110000 24688999998876666
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.++||.|++..++.+++ + .+.+.|||||++++.
T Consensus 157 ~~~fD~Iiv~~a~~~~p--~------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 157 NAPYNAIHVGAAAPDTP--T------ELINQLASGGRLIVP 189 (223)
T ss_dssp GCSEEEEEECSCBSSCC--H------HHHHTEEEEEEEEEE
T ss_pred ccceeeEEEEeechhch--H------HHHHhcCCCcEEEEE
Confidence 67999999999998887 2 256799999999885
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=1.4e-12 Score=113.57 Aligned_cols=108 Identities=20% Similarity=0.116 Sum_probs=84.0
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~f 231 (284)
.++.+|||++||+|.++..++ .+..+|+++|+|+.+++.|++++..+|+ .++++++.|..++ ....++|
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a-~g~~~V~~vD~s~~al~~a~~n~~~ngl------~~~~~i~~d~~~~~~~~~~~~~~f 216 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLA-LGFREVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEGERF 216 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHH-HHEEEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCeeeccCCCCcHHHHHHH-hcCCcEEeecchHHHHHHHHHHHHHcCC------CCcceeeccHHHHhhhhHhhhcCC
Confidence 367899999999999999877 4555799999999999999999987764 4688999987653 2334689
Q ss_pred eEEEecchhccCCh-------hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~l~~~~~-------~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+|++......... .+...++..+.++|||||.|+++.+
T Consensus 217 D~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 217 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99998653221111 1345688899999999999998754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.26 E-value=7.2e-12 Score=101.30 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=61.4
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
-.+.+|||+|||+|.++..++..+..+|+++|+++.+++.|+++.. ++++.++|+.+++ ++||+|+
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-----------~~~~~~~D~~~l~---~~fD~Vi 112 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------GVNFMVADVSEIS---GKYDTWI 112 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------TSEEEECCGGGCC---CCEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-----------cccEEEEehhhcC---CcceEEE
Confidence 3578999999999999988887777789999999999999999864 3789999998764 6899999
Q ss_pred ecchh
Q 023288 236 VQWCI 240 (284)
Q Consensus 236 ~~~~l 240 (284)
++-.+
T Consensus 113 ~NPPf 117 (197)
T d1ne2a_ 113 MNPPF 117 (197)
T ss_dssp ECCCC
T ss_pred eCccc
Confidence 98654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=6e-12 Score=103.66 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=89.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------CC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 227 (284)
.++.+|||||||+|..+.+++..... +++.+|.++...+.|++++...|+ ..+++++.+|+.+.. ..
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----~~~i~~~~Gda~e~l~~~~~~~~ 132 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALETLDELLAAGE 132 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTTC
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----cceEEEEEeehhhcchhhhhhcc
Confidence 45689999999999999998865432 899999999999999999987766 467889998865421 23
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCC
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLS 280 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~ 280 (284)
.++||+|+...- .......+..+.++|+|||.+++ ||+.-.|.+.++
T Consensus 133 ~~~fD~ifiD~d-----k~~y~~~~~~~~~lL~~GGvii~-Dn~l~~G~v~~~ 179 (219)
T d2avda1 133 AGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAV-LRVLWRGKVLQP 179 (219)
T ss_dssp TTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEE-ECCSGGGGGGSC
T ss_pred cCCccEEEEeCC-----HHHHHHHHHHHHHHhcCCcEEEE-eCCcccCcccCc
Confidence 468999998643 23566788999999999998877 776666666554
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.24 E-value=8.2e-12 Score=104.64 Aligned_cols=102 Identities=12% Similarity=0.211 Sum_probs=84.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
...+|||||||+|.++..++++++. ++++.|. |..++.+ .. ..+++++.+|+.+. . ..+|+++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~--------~~rv~~~~gD~f~~-~--p~aD~~~ 143 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SG--------SNNLTYVGGDMFTS-I--PNADAVL 143 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CC--------BTTEEEEECCTTTC-C--CCCSEEE
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cc--------cCceEEEecCcccC-C--CCCcEEE
Confidence 3468999999999999999998877 8999998 4444322 11 46799999998763 2 2579999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCC---cEEEEEeccCCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPG---GFFVLKENIARS 274 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpG---G~lii~e~~~~~ 274 (284)
+.++||+.++++...+|+++++.|+|| |+++|.|.+.++
T Consensus 144 l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~ 185 (244)
T d1fp2a2 144 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 185 (244)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred EEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCC
Confidence 999999999999999999999999998 889999876543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.18 E-value=1.4e-11 Score=101.84 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=90.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------CC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------PE 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~ 227 (284)
++.+|||||+++|..+..++..... +++.+|.++...+.|++++...|+ ..+++++.++..+.- ..
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----~~~i~~~~g~a~~~L~~l~~~~~~ 133 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPALPVLDEMIKDEKN 133 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHHCGGG
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----ccceeeeehHHHHHHHHHHhcccc
Confidence 5679999999999999999875443 899999999999999999987766 567999999876531 12
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCCCCcccCCC
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGTFLLSH 281 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~d~~ 281 (284)
.++||+|+.-.- .......+..+.++|+|||.+++ ||+.-.|.++++.
T Consensus 134 ~~~fD~iFiDa~-----k~~y~~~~e~~~~ll~~gGiii~-DNvl~~G~v~~~~ 181 (227)
T d1susa1 134 HGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGY-DNTLWNGSVVAPP 181 (227)
T ss_dssp TTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEE-ETTTGGGGGGCCT
T ss_pred CCceeEEEeccc-----hhhhHHHHHHHHhhcCCCcEEEE-ccCCCCCcccCCc
Confidence 468999998542 23566899999999999997766 7877666666553
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.18 E-value=3.6e-11 Score=97.71 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=64.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
-++.+|||+|||+|.++..++.++...|+|+|+|+.+++.+++++... ..+.++.+.|...+. ++||+|+
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~-------~~~~~~~~~d~~~~~---~~fD~Vi 114 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF-------KGKFKVFIGDVSEFN---SRVDIVI 114 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG-------TTSEEEEESCGGGCC---CCCSEEE
T ss_pred CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc-------CCCceEEECchhhhC---CcCcEEE
Confidence 367899999999999999888777778999999999999999997764 245788888887753 6899999
Q ss_pred ecchhcc
Q 023288 236 VQWCIGH 242 (284)
Q Consensus 236 ~~~~l~~ 242 (284)
++..+..
T Consensus 115 ~nPP~~~ 121 (201)
T d1wy7a1 115 MNPPFGS 121 (201)
T ss_dssp ECCCCSS
T ss_pred EcCcccc
Confidence 9876543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.17 E-value=1.7e-11 Score=105.56 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=90.0
Q ss_pred cccccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc
Q 023288 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (284)
Q Consensus 134 ~~~~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~ 213 (284)
+....+.++...+.. ..++.+|||+.||+|.++..++..+. +|++||.|+.+++.|++++..+++. ..+
T Consensus 115 dqr~nr~~~~~~~~~------~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~----~~~ 183 (309)
T d2igta1 115 EQIVHWEWLKNAVET------ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLE----QAP 183 (309)
T ss_dssp GGHHHHHHHHHHHHH------SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCT----TSC
T ss_pred chhHHHHHHHHHHhh------ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhccc----CCc
Confidence 344445566655542 34678999999999999998886666 6999999999999999998765442 235
Q ss_pred eeEEEcCCCCCC----CCCCceeEEEecch-hccC-------ChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 214 TNFFCVPLQDFT----PETGRYDVIWVQWC-IGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 214 ~~~~~~d~~~~~----~~~~~fD~Iv~~~~-l~~~-------~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++|++.|+.++. ....+||+||+.-. +..- -..++..++..+.++|+|||.+++.-.
T Consensus 184 ~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 184 IRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp EEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 899999986542 22368999997532 1110 012456678889999999997666543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.17 E-value=9.6e-12 Score=98.64 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=71.1
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----CCCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~f 231 (284)
.++.+|||+|||+|.++..++.++. +++++|.|+.+++.+++++...+. .. ++...+...+ .....+|
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~-----~~--~v~~~~~d~~~~~~~~~~~~f 111 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-----GA--RVVALPVEVFLPEAKAQGERF 111 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-----CC--EEECSCHHHHHHHHHHTTCCE
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcc-----cc--ceeeeehhcccccccccCCcc
Confidence 4678999999999999998887776 599999999999999999876543 22 3333333221 1334689
Q ss_pred eEEEecchhccCChhhHHHHHHHH--HhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRA--KVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~--~r~LkpGG~lii~ 268 (284)
|+|++.-.++. . +...+..+ ..+|+|||.+++.
T Consensus 112 D~If~DPPY~~-~---~~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 112 TVAFMAPPYAM-D---LAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp EEEEECCCTTS-C---TTHHHHHHHHHTCEEEEEEEEEE
T ss_pred ceeEEcccccc-C---HHHHHHHHHHcCCcCCCeEEEEE
Confidence 99999766543 1 12333333 3579999988774
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=2.4e-11 Score=97.95 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=85.0
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (284)
+.++..+||++||+|..+..+++.... +|+|+|.++.|++.|++++... ..++.++.+++.++. ...
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------~~r~~~~~~~f~~~~~~~~~~~~ 93 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYREADFLLKTLGI 93 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGGHHHHHHHTTC
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-------cccccchhHHHhhHHHHHHHcCC
Confidence 678899999999999999999987544 8999999999999999998653 346888998876642 335
Q ss_pred CceeEEEecchh---------ccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 229 GRYDVIWVQWCI---------GHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l---------~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
++||.|+....+ ..+. .....+..+.++|+|||.+++...
T Consensus 94 ~~vdgIl~DlGvSs~Qld~~~r~~~--~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 94 EKVDGILMDLGVSTYQLKGENRELE--NLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp SCEEEEEEECSCCHHHHHTSHTHHH--HHHHHHHHGGGGEEEEEEEEEEES
T ss_pred CCcceeeeccchhHhhhhhhhccch--hHHHHHHHHHHhcCCCCeeeeecc
Confidence 689999854322 1222 466889999999999999998754
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.15 E-value=1.2e-11 Score=107.54 Aligned_cols=111 Identities=9% Similarity=0.069 Sum_probs=85.8
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (284)
.++.+|||+.||+|.++..++..+..+|++||+|+.+++.+++++..+++. ..+++++++|+.++- ....+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc----CcceEEEEccHHHHHHHHHhhcCCC
Confidence 367899999999999999887777778999999999999999998766542 246889999986531 234689
Q ss_pred eEEEecch-hc----cCC--hhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 232 DVIWVQWC-IG----HLT--DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 232 D~Iv~~~~-l~----~~~--~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
|+|++... +. ... ..+...+++.+.++|+|||.|+++-+
T Consensus 219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99997532 10 000 12466799999999999999999765
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=2.4e-11 Score=99.70 Aligned_cols=119 Identities=9% Similarity=0.107 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeE
Q 023288 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (284)
Q Consensus 139 ~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~ 216 (284)
..++..++.. .++.+|||+|||+|..+..++.... .+|+++|+++.+++.|++++...|+ ..++++
T Consensus 45 G~lL~~lv~~-------~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----~~~i~l 112 (214)
T d2cl5a1 45 GQIMDAVIRE-------YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----QDKVTI 112 (214)
T ss_dssp HHHHHHHHHH-------HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEE
T ss_pred HHHHHHHHHh-------hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----Ccccee
Confidence 3455555552 3567999999999999998886433 2799999999999999998877665 467999
Q ss_pred EEcCCCCCC------CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 217 FCVPLQDFT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 217 ~~~d~~~~~------~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+.+|..+.. ...++||+|+....-... .....+.+..++|||||+++ .|++.-
T Consensus 113 ~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~---~~~~~l~~~~~lLkpGGvIv-~Ddvl~ 171 (214)
T d2cl5a1 113 LNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKCGLLRKGTVLL-ADNVIV 171 (214)
T ss_dssp EESCHHHHGGGHHHHSCCCCEEEEEECSCGGGH---HHHHHHHHHTTCEEEEEEEE-ESCCCC
T ss_pred eeccccccccchhhcccccccceeeeccccccc---ccHHHHHHHhCccCCCcEEE-EeCcCC
Confidence 999876531 234689999976321110 11235677889999999755 466543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.11 E-value=1.3e-10 Score=97.16 Aligned_cols=101 Identities=15% Similarity=0.253 Sum_probs=82.2
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
...+|||||||+|.++..++++++. +++++|+.+ .++.+ .. ..++++...|+.+. .+ ..|+++
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~----~~--------~~r~~~~~~d~~~~-~P--~ad~~~ 144 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA----PS--------YPGVEHVGGDMFVS-IP--KADAVF 144 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC----CC--------CTTEEEEECCTTTC-CC--CCSCEE
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc----cc--------CCceEEeccccccc-CC--CcceEE
Confidence 4568999999999999999998877 899999854 22211 11 35789999998652 33 357888
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccCC
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (284)
+.+++|..++++...+|+++++.|+|||.++|.|.+.+
T Consensus 145 l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~ 182 (243)
T d1kyza2 145 MKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILP 182 (243)
T ss_dssp CSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEEC
T ss_pred EEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEec
Confidence 99999999999999999999999999999999987643
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=7.4e-11 Score=94.44 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=81.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~Iv 235 (284)
.+.+|||++||+|.++...+.+++..|++||.++.+++.+++++...+. .+..++..|+.++ .....+||+|+
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~------~~~~ii~~d~~~~l~~~~~~fDlIf 116 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNAMSFLAQKGTPHNIVF 116 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCHHHHHSSCCCCEEEEE
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc------cceeeeeecccccccccccccCEEE
Confidence 4579999999999999999999999999999999999999998865432 4577888887654 23356899999
Q ss_pred ecchhccCChhhHHHHHHHHHh--cCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r--~LkpGG~lii~ 268 (284)
+...... .....++..+.+ .|+|+|.+++-
T Consensus 117 ~DPPY~~---~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 117 VDPPFRR---GLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ECCSSST---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EcCcccc---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence 9876543 234566666654 69999988873
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=5.2e-10 Score=94.55 Aligned_cols=106 Identities=14% Similarity=0.046 Sum_probs=74.6
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~Iv 235 (284)
+..+|+|+|||+|..+..++.....+|+++|+|+..++.|++++...+. ..++.+...++.+.. ...++||+|+
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~-----~~~~~i~~~~~~~~~~~~~~~fDlIV 184 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----SDRFFVRKGEFLEPFKEKFASIEMIL 184 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC-----CceeEEeecccccccccccCcccEEE
Confidence 4568999999999999987754434899999999999999999887654 345677888887643 2236899999
Q ss_pred ecchhc----cCC-------------hhhHHHHHHH-HHhcCCCCcEEEE
Q 023288 236 VQWCIG----HLT-------------DDDFVSFFKR-AKVGLKPGGFFVL 267 (284)
Q Consensus 236 ~~~~l~----~~~-------------~~~~~~~l~~-~~r~LkpGG~lii 267 (284)
++-..- .++ .++.-.++++ +.+.|+|||++++
T Consensus 185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~ 234 (271)
T d1nv8a_ 185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 234 (271)
T ss_dssp ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred EcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence 884311 000 0111122222 5678999998777
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=4.8e-10 Score=93.96 Aligned_cols=107 Identities=12% Similarity=-0.013 Sum_probs=77.3
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------CCC
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~ 228 (284)
.+..+|||+|||+|..+..++.+.+. +++|+|+|+.+++.|++++...++ ..++.+...+..... ..+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l-----~~~~~~~~~~~~~~~~~~~~~~~~ 134 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDALKEESE 134 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTSTTCCS
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC-----CcceeeeeeccHHhhhhhhhhccc
Confidence 45579999999999999988876544 799999999999999999987665 455667665543321 234
Q ss_pred CceeEEEecchhccCChh---------------------------------hHHHHHHHHHhcCCCCcEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDD---------------------------------DFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~---------------------------------~~~~~l~~~~r~LkpGG~lii 267 (284)
++||+|+|+..++....+ -...++++....++..|++.+
T Consensus 135 ~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~ 206 (250)
T d2h00a1 135 IIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSC 206 (250)
T ss_dssp CCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEE
T ss_pred CceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEE
Confidence 689999999776532110 134456677778888887754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.01 E-value=1.9e-10 Score=91.95 Aligned_cols=104 Identities=16% Similarity=0.109 Sum_probs=82.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCce
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~f 231 (284)
.++.+|||+.||+|.++...+.++...|++||.++.+++.+++++...+. ..++++++.|+.++- ....+|
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-----~~~~~i~~~D~~~~l~~~~~~~~~f 114 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRALEQFYEEKLQF 114 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-----ccccccccccchhhhhhhcccCCCc
Confidence 36789999999999999999999998999999999999999998865433 357889999976531 234589
Q ss_pred eEEEecchhccCChhhHHHHHHHHHh--cCCCCcEEEE
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVL 267 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r--~LkpGG~lii 267 (284)
|+|++...... ......+..+.. .|+|+|.+++
T Consensus 115 DlIflDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~ 149 (182)
T d2fhpa1 115 DLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVC 149 (182)
T ss_dssp EEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ceEEechhhhh---hHHHHHHHHHHHCCCCCCCEEEEE
Confidence 99998876532 245567777754 6999998776
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.91 E-value=4.7e-10 Score=95.33 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=81.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC----CCCCCcceeEEEcCCCCCCCCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM----APDMHKATNFFCVPLQDFTPETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~ 230 (284)
..++.+||.||+|.|..+..+++....+|+.||+++.+++.|++.+...... .....++++++.+|...+.-.+++
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 3567899999999999999888655558999999999999999887542110 001146788999988655333468
Q ss_pred eeEEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 231 YDVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
||+|++-..-..-+... -..+++.+.+.|+|||++++.
T Consensus 150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 99999643321111111 247999999999999998874
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.81 E-value=2.2e-08 Score=82.80 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=63.3
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.+|..++... .+|+++|+++.+++.+++++.. ..+++++.+|+.+++++......|
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~--------~~n~~i~~~D~l~~~~~~~~~~~v 89 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD--------HDNFQVLNKDILQFKFPKNQSYKI 89 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT--------CCSEEEECCCGGGCCCCSSCCCEE
T ss_pred CCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhc--------ccchhhhhhhhhhcccccccccee
Confidence 5688999999999999999999765 4699999999999999998866 468999999999887665444455
Q ss_pred Eecchh
Q 023288 235 WVQWCI 240 (284)
Q Consensus 235 v~~~~l 240 (284)
+++-..
T Consensus 90 v~NLPY 95 (235)
T d1qama_ 90 FGNIPY 95 (235)
T ss_dssp EEECCG
T ss_pred eeeehh
Confidence 555443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=5.6e-09 Score=90.00 Aligned_cols=112 Identities=16% Similarity=0.276 Sum_probs=79.5
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
+.+.+||.||+|.|..+..+++.. ..+|++||+++.+++.|++.+...+. .....++++++.+|..++- -.+.+||+
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-CccCCCceEEEEchHHHHhhhcCCcccE
Confidence 467899999999999999887543 33899999999999999998732100 0011357889999987652 22468999
Q ss_pred EEecch--hcc-CChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWC--IGH-LTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~--l~~-~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++-.. ... .+... -..+++.+.+.|+|||++++.
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 995432 111 01111 247999999999999999874
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.73 E-value=9.5e-09 Score=89.20 Aligned_cols=106 Identities=13% Similarity=0.162 Sum_probs=76.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHh----CCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR----YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~----~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 228 (284)
..++.+|||.|||+|.+...+... ... .++|+|+++.++..|+.+....+ ....+...|..... ..
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~-~~ 186 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-------QKMTLLHQDGLANL-LV 186 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-------CCCEEEESCTTSCC-CC
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-------hhhhhhcccccccc-cc
Confidence 456789999999999999877653 112 69999999999999987764321 23556666654433 33
Q ss_pred CceeEEEecchhccCChhh----------------HHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDD----------------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~----------------~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+||+|+++..+......+ ...++..+.+.|+|||++++.
T Consensus 187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I 242 (328)
T d2f8la1 187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 242 (328)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEE
Confidence 6899999997664322111 234799999999999987775
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.73 E-value=9.6e-09 Score=81.79 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=77.9
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC---CCCCCCceeE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FTPETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~fD~ 233 (284)
.+.+|||+-||||.++...+.++...|+.||.+...++..+++++..+.. .....+...|..+ ......+||+
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~----~~~~~~~~~d~~~~l~~~~~~~~fDl 118 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVINQSSLDFLKQPQNQPHFDV 118 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc----ccccccccccccccccccccCCcccE
Confidence 45699999999999999999999999999999999999999988654331 1234555555332 2233457999
Q ss_pred EEecchhccCChhhHHHHHHHHHh--cCCCCcEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVL 267 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r--~LkpGG~lii 267 (284)
|++...... . .....+..+.. .|+++|.+++
T Consensus 119 IFlDPPY~~-~--~~~~~l~~l~~~~~L~~~~liii 151 (183)
T d2ifta1 119 VFLDPPFHF-N--LAEQAISLLCENNWLKPNALIYV 151 (183)
T ss_dssp EEECCCSSS-C--HHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEechhHhh-h--hHHHHHHHHHHhCCcCCCcEEEE
Confidence 999877654 2 34567777654 7999998777
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.69 E-value=2.8e-09 Score=88.83 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=69.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++.+|||||||+|.+|..+++.+. +|++||+++.+++.+++++.. ..+++++++|+.+++++...++.|
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~--------~~n~~ii~~D~l~~~~~~~~~~~v 97 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL--------NTRVTLIHQDILQFQFPNKQRYKI 97 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT--------CSEEEECCSCCTTTTCCCSSEEEE
T ss_pred CCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh--------ccchhhhhhhhhccccccceeeeE
Confidence 56788999999999999999997754 699999999999988877755 468999999999998887777777
Q ss_pred EecchhccCChhhHHHH
Q 023288 235 WVQWCIGHLTDDDFVSF 251 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~ 251 (284)
+++... |++.+-+..+
T Consensus 98 v~NLPY-~Ist~il~~~ 113 (245)
T d1yuba_ 98 VGNIPY-HLSTQIIKKV 113 (245)
T ss_dssp EEECCS-SSCHHHHHHH
T ss_pred eeeeeh-hhhHHHHHHH
Confidence 777664 5553333333
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=7.2e-08 Score=77.91 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=81.0
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
++.+|+|+|+|.|.-+..++-.++. +++.+|.+..-+...++.....++ .++++++..++++.. ..+||+|+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~~~~-~~~fD~V~ 137 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEEFPS-EPPFDGVI 137 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTTSCC-CSCEEEEE
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC------cceeeeccchhhhcc-ccccceeh
Confidence 4568999999999999988766665 899999999988888876665543 578999999988754 35899999
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+..+- .+..++.-+...+++||.+++.
T Consensus 138 sRA~~------~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 138 SRAFA------SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CSCSS------SHHHHHHHHTTSEEEEEEEEEE
T ss_pred hhhhc------CHHHHHHHHHHhcCCCcEEEEE
Confidence 87662 4568999999999999999986
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.62 E-value=2.2e-08 Score=85.36 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=78.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
+.+.+||-||.|.|..+..+++.. ..+|++||+++.+++.|++.+..... ....++++++..|...+- -.+++||+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~--~~~d~rv~v~~~Da~~~l~~~~~~yDv 165 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRKFKNEFDV 165 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc--cccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence 467899999999999999888543 34799999999999999997643110 011357888989876653 23468999
Q ss_pred EEecchhcc-CChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGH-LTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~-~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++-..-.. .+... -..+++.+.+.|+|||.+++.
T Consensus 166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 996532211 11101 247999999999999999885
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=5.8e-08 Score=81.95 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=80.0
Q ss_pred CCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
..+.+||-||.|.|..+..+++. ...+|+.||+++.+++.|++.+..... ....++++++..|...+- -.+.+||+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~--~~~d~r~~i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcc--cccCCCeEEEechHHHHHhhcCCCCCE
Confidence 46789999999999999988854 234899999999999999998742110 011467889999876642 23468999
Q ss_pred EEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+.-..-..-+... -..+++.+.+.|+|||.++..
T Consensus 152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 99653211101000 237999999999999999875
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.56 E-value=4.3e-08 Score=83.96 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=78.7
Q ss_pred CCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCceeE
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~ 233 (284)
..+.+||-||.|.|..+..+++... .+|+.||+++.+++.|++.+..... ....++++++..|...+- -...+||+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~--~~~dprv~i~i~Da~~~l~~~~~~yDv 182 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFDV 182 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcc--ccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence 4677999999999999998885432 4899999999999999998764321 122467888888876642 23468999
Q ss_pred EEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++-..-..-+... -..+++.+.+.|+|||.++..
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 99753321111111 347899999999999999986
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.53 E-value=9e-08 Score=81.40 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=79.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--CCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~f 231 (284)
.+.+.+||-||.|.|..+..+++... .++++||+++.+++.+++.+.... .....++++++..|...+- ..+++|
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~--~~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA--IGYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--GGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh--ccccCCCcEEEEccHHHHHhhccccCc
Confidence 34678999999999999998885433 379999999999999999763210 0111467888888865542 334689
Q ss_pred eEEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 232 DVIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
|+|+.-..-..-+... -..+++.+.+.|+|||.+++.
T Consensus 156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 9999643211111111 247999999999999999985
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=6.2e-08 Score=82.21 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=78.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
.+.+.+||-||.|.|..+..+++. ...+++.+|+++.+++.|++.+.... .....++++++..|...+- -..++||
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~--~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA--IGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--GGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc--cccCCCCceEEEccHHHHHhcCCCCCC
Confidence 346789999999999999988853 24489999999999999999874210 0011467889999876542 2346899
Q ss_pred EEEecchhccCChhh--HHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~--~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++-..-..-+... -..+++.+.+.|+|||.+++.
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 999653211101011 236899999999999999885
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.50 E-value=8.6e-08 Score=77.85 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
..++.+|||.|||+|.++..+.+.... .++|+|+++..+..+ ......+.|...... ...||
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------------~~~~~~~~~~~~~~~-~~~fd 80 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLLWEP-GEAFD 80 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGGCCC-SSCEE
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------------ccceeeeeehhcccc-ccccc
Confidence 567789999999999998888765443 699999987654321 234566777655443 36899
Q ss_pred EEEecchhccCChh---------------------------hHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDD---------------------------DFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~---------------------------~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+++..+...... -...++..+.+.|+|||.+++.-
T Consensus 81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 99988664321100 12467888999999999988763
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=8.3e-07 Score=77.46 Aligned_cols=103 Identities=14% Similarity=0.110 Sum_probs=77.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCc
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 230 (284)
..++.+|||+-||+|.++..|+ +.+.+|+|+|.++.+++.|++++..++. .|+.|+.++..+.. .....
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La-~~~~~V~gvE~~~~ai~~A~~na~~n~i------~n~~~~~~~~~~~~~~~~~~~~~ 282 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLA-TQAASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHENLEEDVTKQPWAKNG 282 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCTTSCCSSSGGGTTC
T ss_pred cCCCceEEEecccccccchhcc-ccccEEEeccCcHHHHHHHHHhHHhccc------ccceeeecchhhhhhhhhhhhcc
Confidence 5567899999999999999887 5566799999999999999999877654 57899999887643 22357
Q ss_pred eeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 231 fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
||+|+..-.=..+ ...++.+.+. +|.-.++++-|
T Consensus 283 ~d~vilDPPR~G~-----~~~~~~l~~~-~~~~ivYVSCn 316 (358)
T d1uwva2 283 FDKVLLDPARAGA-----AGVMQQIIKL-EPIRIVYVSCN 316 (358)
T ss_dssp CSEEEECCCTTCC-----HHHHHHHHHH-CCSEEEEEESC
T ss_pred CceEEeCCCCccH-----HHHHHHHHHc-CCCEEEEEeCC
Confidence 9999976543332 2455555543 67778888743
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.38 E-value=3.3e-07 Score=72.44 Aligned_cols=105 Identities=20% Similarity=0.145 Sum_probs=79.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 229 (284)
+.++..++|..||.|..+..++.... +|+|+|..+.+++.+++.. ..++.++..+..++. ...+
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~----------~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH----------LPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC----------CTTEEEEESCGGGHHHHHHHTTCS
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc----------ccceeEeehHHHHHHHHHHHcCCC
Confidence 57889999999999999999998765 6999999999999998763 246788888776643 3346
Q ss_pred ceeEEEecchh--ccCCh-----hhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 230 RYDVIWVQWCI--GHLTD-----DDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 230 ~fD~Iv~~~~l--~~~~~-----~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.+|.|++...+ .++.+ ..+...|......|+|||.+++...
T Consensus 85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 79999864322 11111 1245678888999999999998753
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=6.4e-07 Score=70.69 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
..++.+|||+||++|.++..+.+... ..++++|+.+ ... ..++.++.+|+.+..
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~~~--------i~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDP--------IVGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCC--------CTTEEEEESCTTSHHHHHHHHH
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc---------ccc--------cCCceEeecccccchhhhhhhh
Confidence 35778999999999999998876532 3799999764 111 356788999987632
Q ss_pred -CCCCceeEEEecchhccCChhh---------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDD---------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~---------~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+.||+|++-.+.......+ ....+.-+.++|+|||.|++.=
T Consensus 83 ~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 2346899999876644332211 3456777889999999999963
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=5.5e-06 Score=69.55 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=63.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
..++..|||||+|+|.+|..+++.+. +|+++++++.+++..++.+..... ..+++++.+|+..+.++ .++.|
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~-----~~~~~~i~~D~l~~~~~--~~~~v 90 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPV-----ASKLQVLVGDVLKTDLP--FFDTC 90 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEESCTTTSCCC--CCSEE
T ss_pred CCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhcc-----ccchhhhHHHHhhhhhh--hhhhh
Confidence 55778999999999999999998764 699999999999999998865322 36789999999887655 35677
Q ss_pred Eecchh
Q 023288 235 WVQWCI 240 (284)
Q Consensus 235 v~~~~l 240 (284)
|++-..
T Consensus 91 V~NLPY 96 (278)
T d1zq9a1 91 VANLPY 96 (278)
T ss_dssp EEECCG
T ss_pred hcchHH
Confidence 776554
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=8.7e-07 Score=72.82 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=76.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC---CCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD 232 (284)
...+|+|||+|.|.-+..++-..+. +++.+|.+..-+...+......++ .++.++...++++.. ..++||
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L------~n~~i~~~R~E~~~~~~~~~~~~D 143 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRESYD 143 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC------CCcEEEeehhhhccccccccccce
Confidence 4578999999999999877654444 899999999877777665554443 467777777665432 235899
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+|++..+- .+..++.-+...+++||.+++.
T Consensus 144 ~v~sRAva------~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 144 IVTARAVA------RLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp EEEEECCS------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEhhhh------CHHHHHHHHhhhcccCCEEEEE
Confidence 99997652 5668999999999999999885
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.13 E-value=2.4e-06 Score=69.96 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=65.4
Q ss_pred CCceEEEeeccccHHHHHHHH---h-C-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CC
Q 023288 157 QHLVALDCGSGIGRITKNLLI---R-Y-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PE 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~---~-~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~ 227 (284)
++.+|||||++.|..+..++. . + ..+++++|+.+........ ...+++++.+|..+.. ..
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~-----------~~~~I~~i~gDs~~~~~~~~l~ 148 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----------DMENITLHQGDCSDLTTFEHLR 148 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----------GCTTEEEEECCSSCSGGGGGGS
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc-----------cccceeeeecccccHHHHHHHH
Confidence 567999999999988775543 1 2 2379999997643322111 1357899999876543 23
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
...+|+|+.-.. |+ ....+.. + ++...|+|||++++-|.+
T Consensus 149 ~~~~dlIfID~~-H~-~~~v~~~-~-~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 149 EMAHPLIFIDNA-HA-NTFNIMK-W-AVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SSCSSEEEEESS-CS-SHHHHHH-H-HHHHTCCTTCEEEECSCH
T ss_pred hcCCCEEEEcCC-cc-hHHHHHH-H-HHhcccCcCCEEEEEcCC
Confidence 446888886544 43 3223332 2 356899999999997763
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.12 E-value=4.2e-06 Score=74.71 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=77.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC--------------CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF--------------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~--------------~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d 220 (284)
+.++.+|+|-.||+|.+...+.+... ..+.|+|+++.+...|+.+..-.+.. .........|
T Consensus 160 ~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~----~~~~~i~~~d 235 (425)
T d2okca1 160 PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----TDRSPIVCED 235 (425)
T ss_dssp CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----SSCCSEEECC
T ss_pred CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc----cccceeecCc
Confidence 55678999999999999987765321 14999999999999998775433321 1234566666
Q ss_pred CCCCCCCCCceeEEEecchhccCChh---------------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 221 LQDFTPETGRYDVIWVQWCIGHLTDD---------------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 221 ~~~~~~~~~~fD~Iv~~~~l~~~~~~---------------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..... ....||+|+++..+..-... .-..++..+...|+|||.+.+.
T Consensus 236 ~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI 297 (425)
T d2okca1 236 SLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 297 (425)
T ss_dssp TTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEE
Confidence 65433 34689999999776432111 1235999999999999987776
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=2.9e-06 Score=70.35 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=53.6
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (284)
..++..|||||||+|.+|..+++.. .+|+++|+++.+++..+++... ..+++++.+|+.++++
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~--------~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFL--------GPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTT--------GGGEEEECSCGGGCCH
T ss_pred CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhh--------ccchhHHhhhhhhhcc
Confidence 4578899999999999999998654 5699999999999999887654 4689999999988753
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.94 E-value=0.00019 Score=58.34 Aligned_cols=106 Identities=11% Similarity=-0.094 Sum_probs=62.2
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcc-eeEEEc-CCCCCCCCCCce
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCV-PLQDFTPETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~-~~~~~~-d~~~~~~~~~~f 231 (284)
..+..+|+|+|||.|.++..++.... ..+.|+++--...+ ..... .....+ +++... |+.. .+++.+
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-----~P~~~---~~~~~ni~~~~~~~dv~~--l~~~~~ 133 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-----EPIPM---STYGWNLVRLQSGVDVFF--IPPERC 133 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-----CCCCC---CSTTGGGEEEECSCCTTT--SCCCCC
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-----CCccc---cccccccccchhhhhHHh--cCCCcC
Confidence 46778999999999999997765432 25778877321100 00000 000112 333332 3333 335689
Q ss_pred eEEEecchhccCChhh-----HHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDDD-----FVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~-----~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|+|-..-. -+..+ ...++.-+.+.|+|||.|++.=.+
T Consensus 134 D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 134 DTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 9999875432 22111 335677788999999999886443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=8.9e-06 Score=69.53 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=78.5
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
+.++.+|||+.||.|.=+..++..... .++++|+++.-+...+++....+. .++.....|...++.....||
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------~~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------hcccccccccccccccccccc
Confidence 678899999999999998888765443 699999999999999887766543 456666666665554457899
Q ss_pred EEEec------chhccCC-------hhh-------HHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQ------WCIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~------~~l~~~~-------~~~-------~~~~l~~~~r~LkpGG~lii~ 268 (284)
.|++- +++..-+ .++ ...++.++.+.|||||.++.+
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYs 243 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 243 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEe
Confidence 99832 2222211 111 356788999999999988876
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=2e-05 Score=66.30 Aligned_cols=109 Identities=19% Similarity=0.072 Sum_probs=76.7
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
+.++.+|||+.+|.|.=+..+++.+.. .|+++|+++.-+...+++++..|. .++.....+..... ...+.||
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~------~~~~~~~~~~~~~~~~~~~~fd 173 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGRYPSQWCGEQQFD 173 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTTCTHHHHTTCCEE
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc------cceeeeccccccchhccccccc
Confidence 678899999999999999988876543 799999999999999998877653 22333333332211 2346899
Q ss_pred EEEe----c--chhccCCh-------hh-------HHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWV----Q--WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~----~--~~l~~~~~-------~~-------~~~~l~~~~r~LkpGG~lii~e 269 (284)
.|++ + +++..-++ .+ ...+|.++.+.|||||+++.+-
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT 230 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 230 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 9993 2 23322221 11 3568889999999999988863
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.79 E-value=9.2e-06 Score=71.08 Aligned_cols=107 Identities=12% Similarity=0.030 Sum_probs=76.2
Q ss_pred CCceEEEeeccccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCC---------CCcceeEEEcCCCCCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPD---------MHKATNFFCVPLQDFTP 226 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~---------~~~~~~~~~~d~~~~~~ 226 (284)
++.+|||..||+|..+..++.. +...|++.|+|+..++.++++++.++..... ....+.+.+.|+..+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 4579999999999999976654 4558999999999999999998654432110 11234555566543321
Q ss_pred -CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 -ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 -~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
....||+|..-. +. ....++..+.+.++.||.|.++-
T Consensus 125 ~~~~~fDvIDiDP----fG--s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FG--SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCC----CC--CcHHHHHHHHHHhccCCEEEEEe
Confidence 235799998764 22 22379999999999999999973
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=2.4e-05 Score=71.48 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=73.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC---C----------------CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCccee
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY---F----------------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~---~----------------~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~ 215 (284)
+.++.+|+|-.||+|.+........ . ..++|+|+++.+...|+-++--.+... .......
T Consensus 162 ~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~-~i~~~~~ 240 (524)
T d2ar0a1 162 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGA 240 (524)
T ss_dssp CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCC-BGGGTBS
T ss_pred CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccc-cccccch
Confidence 5667899999999999987665421 1 148999999999999987764433210 0011223
Q ss_pred EEEcCCCCCC-CCCCceeEEEecchhccCChh------------hHHHHHHHHHhcCCCCcEEEEE
Q 023288 216 FFCVPLQDFT-PETGRYDVIWVQWCIGHLTDD------------DFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 216 ~~~~d~~~~~-~~~~~fD~Iv~~~~l~~~~~~------------~~~~~l~~~~r~LkpGG~lii~ 268 (284)
+...+..... .....||+|+++..+..-... .-..++..+.+.|+|||++.++
T Consensus 241 ~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 241 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp EEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 3334432211 123579999998766322111 1235899999999999988776
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00011 Score=61.98 Aligned_cols=76 Identities=12% Similarity=0.049 Sum_probs=60.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC---CC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TG 229 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~--~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~ 229 (284)
+.++.+|||+.||.|.-+..++... ...|+++|+++.-++..++++...|. .++.+...|...+... .+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------~~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTTCGGGT
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------cceeeeehhhhhhcccccccc
Confidence 5678899999999999888887642 23799999999999999998887664 5677888887765432 25
Q ss_pred ceeEEEe
Q 023288 230 RYDVIWV 236 (284)
Q Consensus 230 ~fD~Iv~ 236 (284)
.||.|++
T Consensus 166 ~fD~VL~ 172 (293)
T d2b9ea1 166 EVHYILL 172 (293)
T ss_dssp TEEEEEE
T ss_pred eeeEEee
Confidence 7999983
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.36 E-value=0.00059 Score=52.14 Aligned_cols=97 Identities=15% Similarity=0.034 Sum_probs=66.4
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--------
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------- 225 (284)
.+++.+||-+||| .|.++..+++....+|+++|.++.-++.|++.... ..+...+.....
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~-----------~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD-----------VTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-----------EEEECCTTTSCHHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc-----------EEEeccccccccchhhhhhh
Confidence 5678899999998 67777777776666899999999999999886432 112111111100
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
...+.+|+|+-+-.- . ..+..+.+.++|||++++.-.
T Consensus 93 ~~~g~g~D~vid~~g~------~--~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 93 SAIGDLPNVTIDCSGN------E--KCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp HHSSSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECSC
T ss_pred cccccCCceeeecCCC------h--HHHHHHHHHHhcCCceEEEec
Confidence 012468988854321 2 578888899999999998743
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.08 E-value=0.00012 Score=56.40 Aligned_cols=97 Identities=19% Similarity=0.090 Sum_probs=64.5
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEE-cCCCCCC-CCCCce
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFT-PETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~-~d~~~~~-~~~~~f 231 (284)
.+++.+||-+||| .|.++..+++....+|+++|.|+.-++.+++.-.. .++. .+-.+.. ...+.|
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~------------~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD------------HYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS------------EEEEGGGTSCHHHHSCSCE
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc------------EEeeccchHHHHHhhhccc
Confidence 5688999999999 77788877765555799999999999999886432 1111 1111111 123579
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
|+|+..-.-.+ + ..+..+.+.|+|+|++++.-
T Consensus 93 d~vi~~~~~~~----~--~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 93 DLIVVCASSLT----D--IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EEEEECCSCST----T--CCTTTGGGGEEEEEEEEECC
T ss_pred ceEEEEecCCc----c--chHHHHHHHhhccceEEEec
Confidence 99886432211 1 12345788999999999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.02 E-value=0.00095 Score=52.46 Aligned_cols=102 Identities=9% Similarity=-0.090 Sum_probs=66.5
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCC-CCCC------
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT------ 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~-~~~~------ 225 (284)
.+++.+||-+|||. |..+..+++. +...|+++|.++.-++.|++.-.. ...... .++.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~-------------~~~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-------------IADLSLDTPLHEQIAAL 89 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-------------EEETTSSSCHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc-------------EEEeCCCcCHHHHHHHH
Confidence 66889999999997 6666666654 455899999999999999876322 111111 1110
Q ss_pred CCCCceeEEEecchh------cc-CChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 PETGRYDVIWVQWCI------GH-LTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l------~~-~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.....+|+++-.-.. ++ +........++.+.++++|||++++.-
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 122468998843221 11 111112368999999999999999874
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.95 E-value=0.00082 Score=57.14 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=48.5
Q ss_pred CCceEEEeeccccHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC
Q 023288 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~ 223 (284)
++..|||||.|.|.+|..++..+ +.+|+++|+++.+.+..++.+.. .++.++..|+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---------~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---------SPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---------SSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---------CCcEEEeCchhh
Confidence 56789999999999999999764 45899999999999999988754 356777787754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.0025 Score=49.11 Aligned_cols=99 Identities=15% Similarity=0.048 Sum_probs=64.5
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC----C--C
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----T--P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~----~--~ 226 (284)
..++.+||-+||| .|..+..+++.... +|+++|.++.-++.+++.-... -++....+..+. . .
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~~~~i~~~~ 96 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL---------TLNRRETSVEERRKAIMDIT 96 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE---------EEETTTSCHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE---------EEeccccchHHHHHHHHHhh
Confidence 4678899999998 47777777776554 7999999999999998753220 010000111000 0 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+|+|+-+-.- . ..++.+.+.|+|||++++.-.
T Consensus 97 ~~~g~Dvvid~vG~------~--~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 97 HGRGADFILEATGD------S--RALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp TTSCEEEEEECSSC------T--THHHHHHHHEEEEEEEEECCC
T ss_pred CCCCceEEeecCCc------h--hHHHHHHHHhcCCCEEEEEee
Confidence 12469998854321 1 467788899999999988753
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.0024 Score=48.79 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=64.9
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
.+++.+||-.|+ |.|..+..+++....+|++++-|++-++.+++.-.. .++...-.++. .
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~------------~vi~~~~~~~~~~i~~~t 93 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH------------EVFNHREVNYIDKIKKYV 93 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTSTTHHHHHHHHH
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc------------cccccccccHHHHhhhhh
Confidence 567889999996 578888888877666799999999988988875322 11111111110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
....||+|+.+-. . ..+....+.|+|+|++++.
T Consensus 94 ~~~g~d~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 94 GEKGIDIIIEMLA-------N--VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CTTCEEEEEESCH-------H--HHHHHHHHHEEEEEEEEEC
T ss_pred ccCCceEEeeccc-------H--HHHHHHHhccCCCCEEEEE
Confidence 2357999997543 2 4677788999999999986
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.82 E-value=0.0043 Score=53.13 Aligned_cols=132 Identities=16% Similarity=0.103 Sum_probs=76.4
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHH-------h-------CCC---cEEEEeCCHHHHHHHHHHc
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLI-------R-------YFN---EVDLLEPVSHFLDAARESL 200 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~-------~-------~~~---~v~gvD~S~~~l~~ar~~~ 200 (284)
....+...+..+..........+|.|+||.+|..+..+.. . ... +|..-|.-..=-...=+.+
T Consensus 32 ~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L 111 (359)
T d1m6ex_ 32 TKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSL 111 (359)
T ss_dssp THHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTT
T ss_pred HHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhc
Confidence 3344444444443221233457899999999988742221 1 111 5667775443222222222
Q ss_pred CCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEecchhccCCh-------------------------------hhHH
Q 023288 201 APENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------DDFV 249 (284)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~~~l~~~~~-------------------------------~~~~ 249 (284)
.... ......-+..+.+.+-.=-+|+++.+++++++++||++. .|+.
T Consensus 112 ~~~~--~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~ 189 (359)
T d1m6ex_ 112 PIEN--DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHA 189 (359)
T ss_dssp TTSC--SCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHH
T ss_pred cccc--cCCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 1110 000001122233455444577899999999999999852 1567
Q ss_pred HHHHHHHhcCCCCcEEEEEecc
Q 023288 250 SFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 250 ~~l~~~~r~LkpGG~lii~e~~ 271 (284)
.+|+.=++-|+|||.++++=..
T Consensus 190 ~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 190 LFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp HHHHHHHHHBCTTCEEEEEEEE
T ss_pred HHHHHHHHHhcCCcEEEEEEec
Confidence 7888889999999999997543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.82 E-value=0.0026 Score=48.87 Aligned_cols=95 Identities=13% Similarity=-0.014 Sum_probs=65.0
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
.+++.+||=+|||. |..+..+++... .+|+++|.++.-++.+++.-.. .++...-.++. .
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~------------~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT------------DILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS------------EEECGGGSCHHHHHHHHT
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc------------ccccccchhHHHHHHHHh
Confidence 56788999999996 888888887654 3799999999999999876322 11111111110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
....||+|+-+-.- . ..++.+.+.++|+|.+++.-
T Consensus 93 ~g~G~D~vid~~g~------~--~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 93 NGKGVDRVIMAGGG------S--ETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TTSCEEEEEECSSC------T--THHHHHHHHEEEEEEEEECC
T ss_pred hccCcceEEEccCC------H--HHHHHHHHHHhcCCEEEEEe
Confidence 22459998854331 1 46677889999999999964
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.66 E-value=0.0027 Score=48.04 Aligned_cols=94 Identities=18% Similarity=0.075 Sum_probs=61.9
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CCC
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~ 228 (284)
.+++.+||=+||| .|..+..+++....+|+++|.++.-++.+++.-.. .++...-.+.. ...
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~------------~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS------------LTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------------EEEETTTSCHHHHHHHHHS
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc------------ccccccchhHHHHHHHhhc
Confidence 5678899999998 56667777766656899999999999999875322 12222111110 112
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+.+|.|++... . ..+..+.+.|+|||++++.-
T Consensus 93 g~~~~i~~~~~-------~--~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 93 GAHGVLVTAVS-------N--SAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp SEEEEEECCSC-------H--HHHHHHHTTEEEEEEEEECC
T ss_pred CCccccccccc-------c--hHHHHHHHHhcCCcEEEEEE
Confidence 33455554333 2 46778889999999998863
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.66 E-value=0.0034 Score=48.02 Aligned_cols=95 Identities=14% Similarity=-0.011 Sum_probs=63.6
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (284)
.+++.+||=+|||. |..+..+++. +...|+++|.++.-++.+++.-.. .++..+-.+.. ..
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~------------~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT------------HVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCe------------EEEeCCCcCHHHHHHHHc
Confidence 67888999999984 4445555544 555788999999999999876322 22222212111 22
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
++.||+|+-+-.- . ..++.+.++++|+|++++.-
T Consensus 94 ~gg~D~vid~~G~------~--~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 94 DGGVNFALESTGS------P--EILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp TSCEEEEEECSCC------H--HHHHHHHHTEEEEEEEEECC
T ss_pred CCCCcEEEEcCCc------H--HHHHHHHhcccCceEEEEEe
Confidence 3579998854321 2 57788899999999999863
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.50 E-value=0.0069 Score=46.38 Aligned_cols=95 Identities=13% Similarity=-0.103 Sum_probs=65.7
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
.+++.+||=+|||. |.++..+++.... .|+.+|.++.-++.|++.-.. .++...-.+..
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~------------~~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT------------DCLNPRELDKPVQDVITE 93 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS------------EEECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC------------cccCCccchhhhhhhHhh
Confidence 66888999999997 8888888776544 799999999999999886432 11111111100
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e 269 (284)
...+.+|+|+-+-. . . ..+.+..+.++|| |.+++.=
T Consensus 94 ~~~~G~d~vie~~G-----~-~--~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 94 LTAGGVDYSLDCAG-----T-A--QTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp HHTSCBSEEEESSC-----C-H--HHHHHHHHTBCTTTCEEEECC
T ss_pred hhcCCCcEEEEecc-----c-c--hHHHHHHHHhhcCCeEEEecC
Confidence 12357899875432 1 2 6788999999996 9998863
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.012 Score=44.50 Aligned_cols=96 Identities=17% Similarity=0.079 Sum_probs=63.6
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-------
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 225 (284)
.+++.+||=+|||. |.++..+++... .+|+++|.++.-++.|++.-.. .+...+-.+..
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~------------~~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD------------LVLQISKESPQEIARKVE 91 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS------------EEEECSSCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc------------cccccccccccccccccc
Confidence 56788999999985 455555555544 4799999999999999875322 11111111110
Q ss_pred -CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 226 -~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
.....+|+|+-+-.- . ..++.+.+.++|||++++.-.
T Consensus 92 ~~~g~g~Dvvid~~G~------~--~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 92 GQLGCKPEVTIECTGA------E--ASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHTSCCSEEEECSCC------H--HHHHHHHHHSCTTCEEEECSC
T ss_pred ccCCCCceEEEeccCC------c--hhHHHHHHHhcCCCEEEEEec
Confidence 012468988854331 2 578889999999999999754
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.45 E-value=0.00061 Score=55.63 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=57.4
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC---CCCCCCCCCcceeEEEcCCCCCC-CCCCcee
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP---ENHMAPDMHKATNFFCVPLQDFT-PETGRYD 232 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~---~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD 232 (284)
...+|||.-||.|..+..++..+. +|+++|-++.+....+..+.. ..........+++++++|..++. -...+||
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 445899999999999998887776 599999999876555443321 10000001247899999865542 2245799
Q ss_pred EEEecchhcc
Q 023288 233 VIWVQWCIGH 242 (284)
Q Consensus 233 ~Iv~~~~l~~ 242 (284)
+|+.-.++.+
T Consensus 167 vIYlDPMFp~ 176 (250)
T d2oyra1 167 VVYLDPMFPH 176 (250)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9997766643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.16 E-value=0.012 Score=44.22 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=60.4
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC-CC-----CC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-----PE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-----~~ 227 (284)
..++.+||=.|||. |..+..+++....+|+++|.++.-++.+++.-.. .....-.+ +. ..
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~-------------~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD-------------LVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS-------------EEECTTTSCHHHHHHHHH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc-------------eecccccchhhhhccccc
Confidence 56788999999985 5555656666555899999999999999875322 11111111 00 11
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
.+.+|+|++... . ..+....+.|+|||.+++.-
T Consensus 92 ~~~~~~v~~~~~-------~--~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 92 GGVHAAVVTAVS-------K--PAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSEEEEEESSCC-------H--HHHHHHHHHEEEEEEEEECC
T ss_pred CCCceEEeecCC-------H--HHHHHHHHHhccCCceEecc
Confidence 234555544321 2 57888999999999999864
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.97 E-value=0.013 Score=50.22 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=55.1
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC------C--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF------N--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~------~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 226 (284)
.++..+|+|+|+|+|.++..++.... . +++.+|.|+.+.+.-++++.. ..++.++ .++...+.
T Consensus 77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--------~~~i~w~-~~~~~~~~ 147 (365)
T d1zkda1 77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--------IRNIHWH-DSFEDVPE 147 (365)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--------CSSEEEE-SSGGGSCC
T ss_pred CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--------cccceec-cChhhccc
Confidence 34567899999999999988765321 1 589999999988888887764 2334332 34444331
Q ss_pred CCCceeEEEecchhccCCh
Q 023288 227 ETGRYDVIWVQWCIGHLTD 245 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~ 245 (284)
..-+|+++..+..+|-
T Consensus 148 ---~~g~iiaNE~fDAlPv 163 (365)
T d1zkda1 148 ---GPAVILANEYFDVLPI 163 (365)
T ss_dssp ---SSEEEEEESSGGGSCC
T ss_pred ---CCeEEEecccCccccc
Confidence 2368888888888873
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0085 Score=50.33 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=65.8
Q ss_pred CceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC---CCCcee
Q 023288 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYD 232 (284)
Q Consensus 158 ~~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~fD 232 (284)
+.+|+|+=||.|.++..+-..++. -+.++|+.+..++..+.++.. ..+++.|+.++.. +...+|
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~-----------~~~~~~di~~~~~~~~~~~~~D 70 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------TQLLAKTIEGITLEEFDRLSFD 70 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------SCEECSCGGGCCHHHHHHHCCS
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC-----------CCcccCchhhCCHhHcCCCCcc
Confidence 578999999999999887766764 367999999999999988643 3456677776542 123689
Q ss_pred EEEecchhccCCh--------hhHHHHHHHHHhc---C--CCCcEEEEEeccCC
Q 023288 233 VIWVQWCIGHLTD--------DDFVSFFKRAKVG---L--KPGGFFVLKENIAR 273 (284)
Q Consensus 233 ~Iv~~~~l~~~~~--------~~~~~~l~~~~r~---L--kpGG~lii~e~~~~ 273 (284)
+++.......++. ++...++-++.++ + || .+++.||+..
T Consensus 71 ll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kP--k~~i~ENV~~ 122 (343)
T d1g55a_ 71 MILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKG 122 (343)
T ss_dssp EEEECCC------------------CHHHHHHHHGGGCSSCC--SEEEEEEETT
T ss_pred EEEeecccccccccccccccccccccccchhhhhHhhhcCCC--ceeeeeccCC
Confidence 9986654433321 1122333444443 4 56 4677799763
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.89 E-value=0.023 Score=47.02 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=70.2
Q ss_pred ceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEEec
Q 023288 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQ 237 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv~~ 237 (284)
++|||+=||.|.++..+-..++..+.++|+++...+..+.++.. .....|+.++... -...|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA------------KLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS------------EEEESCTTTSCGGGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC------------CCccCChhhCCHhHcccccEEeec
Confidence 37999999999999988877888788999999999998888642 3567888887532 2368999965
Q ss_pred chhccCC---------hhh--HHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 238 WCIGHLT---------DDD--FVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 238 ~~l~~~~---------~~~--~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.....++ ++. +---+-++...++|. +++.||+.
T Consensus 69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~ 112 (324)
T d1dcta_ 69 PPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVK 112 (324)
T ss_dssp CCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEG
T ss_pred ccccccccccccccccccccchHHHHHHHHHhhCCc--eeeccccc
Confidence 4333321 111 222233455667884 77779874
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.80 E-value=0.0024 Score=48.66 Aligned_cols=99 Identities=8% Similarity=0.053 Sum_probs=67.6
Q ss_pred CCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEE
Q 023288 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (284)
Q Consensus 156 ~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I 234 (284)
-++.+|+=||+| .|..+...+.+....|+.+|.++..++..+..+.. ++++...+-..+.-.-...|+|
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----------~~~~~~~~~~~l~~~~~~aDiv 99 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLL 99 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEE
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----------cceeehhhhhhHHHhhccCcEE
Confidence 367899999999 57777777877777899999999999988887643 3444433322221111368999
Q ss_pred EecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 235 v~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
|..-.+-.-+.+. -+-+++.+.+|||..++
T Consensus 100 I~aalipG~~aP~--lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 100 IGAVLVPGRRAPI--LVPASLVEQMRTGSVIV 129 (168)
T ss_dssp EECCCCTTSSCCC--CBCHHHHTTSCTTCEEE
T ss_pred EEeeecCCcccCe--eecHHHHhhcCCCcEEE
Confidence 9765543333222 34577888999999765
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.80 E-value=0.011 Score=44.65 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=64.1
Q ss_pred CCCCceEEEeec-c-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------
Q 023288 155 NNQHLVALDCGS-G-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (284)
Q Consensus 155 ~~~~~~VLDiGc-G-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 225 (284)
.+++.+||=+|| | .|..+..+++. +...|+++|.++.-++.+++.-.. ..+..+-.++.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~------------~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD------------YVINASMQDPLAEIRRI 92 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc------------eeeccCCcCHHHHHHHH
Confidence 567889999997 3 66666666554 545899999999999999876322 12222211110
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+.||+|+.+..- . ..++.+.+.++|||++++.-
T Consensus 93 ~~~~~~d~vid~~g~------~--~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 93 TESKGVDAVIDLNNS------E--KTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp TTTSCEEEEEESCCC------H--HHHTTGGGGEEEEEEEEECC
T ss_pred hhcccchhhhccccc------c--hHHHhhhhhcccCCEEEEec
Confidence 123569999865431 2 56777889999999998873
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0027 Score=48.24 Aligned_cols=95 Identities=16% Similarity=0.040 Sum_probs=63.6
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCcee
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 232 (284)
.+++.+||=+||| .|.++..+++....+++++|.++.-++.+++.-.. .++...-.+. ......+|
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad------------~~i~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD------------EVVNSRNADEMAAHLKSFD 95 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS------------EEEETTCHHHHHTTTTCEE
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCc------------EEEECchhhHHHHhcCCCc
Confidence 5688899999997 47778878876666788999999988888876432 1111111110 11224799
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+-.-.- . ..+....+.++|||++++.-
T Consensus 96 ~vid~~g~------~--~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 96 FILNTVAA------P--HNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEECCSS------C--CCHHHHHTTEEEEEEEEECC
T ss_pred eeeeeeec------c--hhHHHHHHHHhcCCEEEEec
Confidence 98854321 1 34566778999999999864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.37 E-value=0.029 Score=42.72 Aligned_cols=48 Identities=10% Similarity=-0.121 Sum_probs=37.4
Q ss_pred CCCCceEEEeeccc-cHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHcCC
Q 023288 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 155 ~~~~~~VLDiGcGt-G~~s~~l~~~~-~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
.+++.+|+=+|||. |..+..+++.. ..+|+++|.+++-++.|++.-..
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 56888999999985 44555555544 35899999999999999998654
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.32 E-value=0.02 Score=47.78 Aligned_cols=101 Identities=14% Similarity=0.013 Sum_probs=69.7
Q ss_pred CCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCC-CCceeEEE
Q 023288 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (284)
Q Consensus 157 ~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~fD~Iv 235 (284)
.+.+|||+=||.|.++..+-..++.-+.++|+++..++..+.++... .+.|+.++... -..+|+++
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------------~~~Di~~~~~~~~~~~Dll~ 76 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------------PEGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------------CBSCGGGSCGGGSCCCSEEE
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------------CcCchhcCchhhcceeeeee
Confidence 56899999999999999888788877888999999999999998542 13566555422 23689998
Q ss_pred ecchhccCCh---------h--hHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 236 VQWCIGHLTD---------D--DFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 236 ~~~~l~~~~~---------~--~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
.......++. + .+-..+-++.+.++|. +++.||+.
T Consensus 77 ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~--~~~lENV~ 122 (327)
T d2c7pa1 77 AGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVK 122 (327)
T ss_dssp EECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEG
T ss_pred cccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCc--EEecccch
Confidence 5543222211 1 1333444555667885 67779874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.26 E-value=0.034 Score=41.91 Aligned_cols=95 Identities=14% Similarity=-0.077 Sum_probs=62.5
Q ss_pred CCCCceEEEeecccc-HHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CC
Q 023288 155 NNQHLVALDCGSGIG-RITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG-~~s~~l~~-~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~ 227 (284)
.+++.+||-+|||.. ..+..+++ .+...|+++|.++.-++.+++.... .++..+-.... ..
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~------------~~i~~~~~~~~~~~~~~~ 97 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGAD------------HVVDARRDPVKQVMELTR 97 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCS------------EEEETTSCHHHHHHHHTT
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccc------------eeecCcccHHHHHHHhhC
Confidence 356789999999854 44455554 4556899999999999999876432 12221111000 12
Q ss_pred CCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 228 ~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+|+|+-+-.- . ..++...+.|+|||++++.-
T Consensus 98 ~~g~d~vid~~g~------~--~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 98 GRGVNVAMDFVGS------Q--ATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp TCCEEEEEESSCC------H--HHHHHGGGGEEEEEEEEECC
T ss_pred CCCceEEEEecCc------c--hHHHHHHHHHhCCCEEEEEe
Confidence 2469988854431 2 46888899999999999864
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.19 E-value=0.03 Score=42.54 Aligned_cols=93 Identities=14% Similarity=0.023 Sum_probs=63.0
Q ss_pred CCCCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
.+++.+||=.| .|.|.++..+++....++++++-+++-.+.+++.... ..+...-.++. .
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~------------~vi~~~~~~~~~~v~~~t 90 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVE------------YVGDSRSVDFADEILELT 90 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCS------------EEEETTCSTHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccc------------ccccCCccCHHHHHHHHh
Confidence 56778999877 3577888888877666799888888888888764321 11111111110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
....||+|+.+-. . ..++.+.+.|+|+|+++..
T Consensus 91 ~~~g~d~v~d~~g-------~--~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 91 DGYGVDVVLNSLA-------G--EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp TTCCEEEEEECCC-------T--HHHHHHHHTEEEEEEEEEC
T ss_pred CCCCEEEEEeccc-------c--hHHHHHHHHhcCCCEEEEE
Confidence 2357999997543 2 4667788999999999986
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.12 E-value=0.0022 Score=49.05 Aligned_cols=94 Identities=13% Similarity=0.006 Sum_probs=60.5
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCcee
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD 232 (284)
.+++.+||=.|+ |.|..+..+++....+|++++.+++-++.+++.-.. ..+++ .+.....-....+|
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~---------~~i~~--~~~~~~~~~~~g~D 93 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE---------EAATY--AEVPERAKAWGGLD 93 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS---------EEEEG--GGHHHHHHHTTSEE
T ss_pred CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc---------eeeeh--hhhhhhhhcccccc
Confidence 567889998884 357788888877666899999999888888875322 11111 11100001124699
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
+|+-.. . ..+....+.|+|||++++.-
T Consensus 94 ~v~d~~-----G-----~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 94 LVLEVR-----G-----KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp EEEECS-----C-----TTHHHHHTTEEEEEEEEEC-
T ss_pred cccccc-----c-----hhHHHHHHHHhcCCcEEEEe
Confidence 998632 1 12456778999999998863
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.067 Score=40.30 Aligned_cols=95 Identities=13% Similarity=-0.009 Sum_probs=64.2
Q ss_pred CCCCceEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
..++.+||=.|+| .|..+..+++....+|++++.|++-++.+++.-.. ..+...-.++. .
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~------------~vi~~~~~d~~~~v~~~t 93 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW------------QVINYREEDLVERLKEIT 93 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS------------EEEETTTSCHHHHHHHHT
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe------------EEEECCCCCHHHHHHHHh
Confidence 4577899888665 57788888877666899999999999999876432 11211111111 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~ 270 (284)
....+|+|+..-.- ..+......++|+|.+++.-.
T Consensus 94 ~g~g~d~v~d~~g~---------~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 94 GGKKVRVVYDSVGR---------DTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp TTCCEEEEEECSCG---------GGHHHHHHTEEEEEEEEECCC
T ss_pred CCCCeEEEEeCccH---------HHHHHHHHHHhcCCeeeeccc
Confidence 23579988865431 345678889999999887643
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.09 E-value=0.013 Score=44.81 Aligned_cols=99 Identities=14% Similarity=0.048 Sum_probs=65.0
Q ss_pred CCCCceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCce
Q 023288 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRY 231 (284)
Q Consensus 155 ~~~~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~f 231 (284)
..++.+||=-|+ |.|.++..+++....+|+++--|++-.+.+++.-... .++....+.+.. ....+.|
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~---------vi~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE---------VLAREDVMAERIRPLDKQRW 99 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE---------EEECC---------CCSCCE
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce---------eeecchhHHHHHHHhhccCc
Confidence 345678988885 5677888888776667999999999999998764331 121111111111 1234689
Q ss_pred eEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 232 D~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+|+-.-. . ..+....+.|+|||+++..-..
T Consensus 100 D~vid~vg-------g--~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 100 AAAVDPVG-------G--RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp EEEEECST-------T--TTHHHHHHTEEEEEEEEECSCC
T ss_pred CEEEEcCC-------c--hhHHHHHHHhCCCceEEEeecc
Confidence 98885433 1 4577888999999999987543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.08 E-value=0.061 Score=40.08 Aligned_cols=86 Identities=12% Similarity=-0.031 Sum_probs=57.4
Q ss_pred eEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEec
Q 023288 160 VALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (284)
Q Consensus 160 ~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~~ 237 (284)
+|.=||+| .+.++..+.+.++ +|+++|.+++.++.+++... +.....+.+.. ...|+|+.+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~------------~~~~~~~~~~~----~~~DiIila 64 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL------------VDEAGQDLSLL----QTAKIIFLC 64 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS------------CSEEESCGGGG----TTCSEEEEC
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc------------cceeeeecccc----ccccccccc
Confidence 57778888 4455666665555 59999999999998876521 11112222221 357988864
Q ss_pred chhccCChhhHHHHHHHHHhcCCCCcEEEE
Q 023288 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (284)
Q Consensus 238 ~~l~~~~~~~~~~~l~~~~r~LkpGG~lii 267 (284)
- |......+++++...|+|+-.++-
T Consensus 65 v-----p~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 65 T-----PIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp S-----CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred C-----cHhhhhhhhhhhhhhcccccceee
Confidence 3 345677899999999998886653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.05 E-value=0.092 Score=39.62 Aligned_cols=99 Identities=12% Similarity=-0.165 Sum_probs=59.5
Q ss_pred CCCCceEEEeecccc-HHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCC--CC--CCCC
Q 023288 155 NNQHLVALDCGSGIG-RITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ--DF--TPET 228 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG-~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~--~~--~~~~ 228 (284)
.+++.+||=+|||.. ..+..+++. +..+|+++|.++.-++.+++.-... .+++...|.. .. ....
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~---------~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE---------CLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE---------EECGGGCSSCHHHHHHHHTT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE---------EEcCCCchhHHHHHHHHhcC
Confidence 678899999999854 444445543 5568999999999999998864321 1111111110 00 0123
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCC-CCcEEEEEec
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK-PGGFFVLKEN 270 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~Lk-pGG~lii~e~ 270 (284)
+.+|+|+-.-.. ...+......++ ++|.+++.-.
T Consensus 96 ~G~d~vid~~g~--------~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 96 GGVDYAVECAGR--------IETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp SCBSEEEECSCC--------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCCcEEEEcCCC--------chHHHHHHHHHHHhcCceEEEEE
Confidence 468888854331 145555665555 5699888644
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.99 E-value=0.061 Score=40.20 Aligned_cols=88 Identities=15% Similarity=0.045 Sum_probs=57.6
Q ss_pred eEEEeeccc--cHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEEe
Q 023288 160 VALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (284)
Q Consensus 160 ~VLDiGcGt--G~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv~ 236 (284)
+|+=||||. |.++..+.+.++. +|+++|.++..++.+++.... .....+.... .....|+|+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~------------~~~~~~~~~~--~~~~~dlIil 68 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII------------DEGTTSIAKV--EDFSPDFVML 68 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC------------SEEESCGGGG--GGTCCSEEEE
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc------------hhhhhhhhhh--hccccccccc
Confidence 578899984 3455556656654 799999999999999876321 1111222111 1235788886
Q ss_pred cchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 237 ~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
+-. ......++.++...++++-.++
T Consensus 69 a~p-----~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 69 SSP-----VRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp CSC-----HHHHHHHHHHHHHHSCTTCEEE
T ss_pred cCC-----chhhhhhhhhhhcccccccccc
Confidence 654 3356688899999999886543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.69 E-value=0.029 Score=46.20 Aligned_cols=59 Identities=8% Similarity=-0.012 Sum_probs=47.0
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
+..++..++... .+++..|||.=||+|..+.... ....+.+|+|++++.++.|++++..
T Consensus 236 P~~L~~rlI~~~-----s~~gdiVlDpF~GSGTT~~AA~-~lgR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 236 PAKLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CTHHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred chHHHHHhhhhc-----ccCCCEEEecCCCCcHHHHHHH-HcCCcEEEEeCCHHHHHHHHHHHHh
Confidence 445666666543 4578999999999999999655 4445699999999999999999865
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.64 E-value=0.084 Score=40.00 Aligned_cols=94 Identities=10% Similarity=-0.009 Sum_probs=65.6
Q ss_pred CCCCceEEEeecc--ccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcG--tG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
.+++.+||=.|++ .|..+..+++....+|++++-+++-++.+++.-.. ..+..+-+++. .
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~------------~vi~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD------------AAFNYKTVNSLEEALKKA 94 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS------------EEEETTSCSCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhh------------hhcccccccHHHHHHHHh
Confidence 5678899988875 56777778877777899999999999888876432 11221111110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
....+|+|+-+-. . ..++.+.+.|+|||.+++.=
T Consensus 95 ~~~Gvd~v~D~vG-------~--~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 95 SPDGYDCYFDNVG-------G--EFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp CTTCEEEEEESSC-------H--HHHHHHGGGEEEEEEEEECC
T ss_pred hcCCCceeEEecC-------c--hhhhhhhhhccCCCeEEeec
Confidence 2356999885432 2 57788999999999999863
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.39 E-value=0.048 Score=43.37 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred cHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcC
Q 023288 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (284)
Q Consensus 138 ~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~ 201 (284)
+...+..++... ..++..|||.=||+|..+.+.. ....+.+|+|++++.++.|++++.
T Consensus 198 P~~L~~~lI~~~-----s~~gd~VlDpF~GSGTT~~aa~-~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 198 PRDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CHHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHh-----CCCCCEEEECCCCchHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHc
Confidence 345566655533 3578899999999999998555 555679999999999999999863
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=94.18 E-value=0.17 Score=41.66 Aligned_cols=104 Identities=11% Similarity=-0.015 Sum_probs=70.0
Q ss_pred ceEEEeeccccHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--------CCC
Q 023288 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--------PET 228 (284)
Q Consensus 159 ~~VLDiGcGtG~~s~~l~~~~~~--~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~ 228 (284)
..|+.+|||-=.-...+ .... .++=+|. |.+++.-++.+...+.. ...+..++..|+.+.. +..
T Consensus 91 ~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~---~~~~~~~v~~Dl~~~~~~~L~~~g~d~ 164 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRL--DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVT---PTADRREVPIDLRQDWPPALRSAGFDP 164 (297)
T ss_dssp CEEEEETCTTCCHHHHS--CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCC---CSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred CeEEEeCcccCChhhhc--CCCcCceEEEcCC-hHHHHHHHHHHHhcCCC---CCceEEEecccccchHHHHHHhcCCCC
Confidence 45777999865544433 2223 5666673 77887766666443221 1234567777876521 222
Q ss_pred CceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 229 ~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..-=++++-.++.|++.++...+++.+.+...||+.+++-
T Consensus 165 ~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 165 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 3445677788999999999999999999999999998884
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=93.90 E-value=0.034 Score=42.56 Aligned_cols=108 Identities=12% Similarity=-0.003 Sum_probs=61.4
Q ss_pred CCceEEEeeccc-cHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCC---------
Q 023288 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------- 226 (284)
Q Consensus 157 ~~~~VLDiGcGt-G~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------- 226 (284)
++.+|+=||+|+ |..+...+......|+++|.++.-++..++.....-..........+-......++..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 567999999995 6667777777777899999999999999887543100000000000000000101000
Q ss_pred ---CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEE
Q 023288 227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (284)
Q Consensus 227 ---~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~li 266 (284)
.-...|+||..-.+..-+.+. -+-+++.+.+|||..++
T Consensus 108 l~~~l~~aDlVI~talipG~~aP~--lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 108 VLKELVKTDIAITTALIPGKPAPV--LITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHTTCSEEEECCCCTTSCCCC--CSCHHHHTTSCTTCEEE
T ss_pred HHHHHHhhhhheeeeecCCcccce--eehHHHHHhcCCCcEEE
Confidence 012579999765544333222 34567888999999765
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.75 E-value=0.35 Score=34.22 Aligned_cols=90 Identities=8% Similarity=-0.026 Sum_probs=56.3
Q ss_pred eEEEeeccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCcee
Q 023288 160 VALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (284)
Q Consensus 160 ~VLDiGcGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD 232 (284)
+|+=+|+ |.++..+++ ....+|+.+|.+++.++.+++.+. ..++.+|..+.. ..-..+|
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~------------~~vi~Gd~~~~~~l~~~~i~~a~ 67 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID------------ALVINGDCTKIKTLEDAGIEDAD 67 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS------------SEEEESCTTSHHHHHHTTTTTCS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh------------hhhccCcccchhhhhhcChhhhh
Confidence 5666666 555554443 333469999999999998876542 457788887642 2234688
Q ss_pred EEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 233 ~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+++... +++...++....+.+.+.-.+...
T Consensus 68 ~vv~~t~-----~d~~N~~~~~~~k~~~~~~iI~~~ 98 (132)
T d1lssa_ 68 MYIAVTG-----KEEVNLMSSLLAKSYGINKTIARI 98 (132)
T ss_dssp EEEECCS-----CHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred hhcccCC-----cHHHHHHHHHHHHHcCCceEEEEe
Confidence 8887432 223334555566778887655443
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=93.58 E-value=0.053 Score=43.67 Aligned_cols=113 Identities=14% Similarity=0.073 Sum_probs=78.4
Q ss_pred CCCCceEEEeeccccHHHHHHHHhCC-----------------------------------------CcEEEEeCCHHHH
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRYF-----------------------------------------NEVDLLEPVSHFL 193 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~~-----------------------------------------~~v~gvD~S~~~l 193 (284)
-..+..++|-=||+|.+.+..+-... ..+.|.|+++.++
T Consensus 48 w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai 127 (249)
T d1o9ga_ 48 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA 127 (249)
T ss_dssp CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHH
Confidence 34567899999999999876554100 0367899999999
Q ss_pred HHHH---HHcCCCCCCCCCCCcceeEEEcCCCCCCC-----CCCceeEEEecchhcc-C------ChhhHHHHHHHHHhc
Q 023288 194 DAAR---ESLAPENHMAPDMHKATNFFCVPLQDFTP-----ETGRYDVIWVQWCIGH-L------TDDDFVSFFKRAKVG 258 (284)
Q Consensus 194 ~~ar---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~fD~Iv~~~~l~~-~------~~~~~~~~l~~~~r~ 258 (284)
+.|+ +++...|+ ...+.+...|+.+... .+...++||+|-.... + ..+.+..++..+.++
T Consensus 128 ~~A~~~r~n~~~Agl-----~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~ 202 (249)
T d1o9ga_ 128 QAARRLRERLTAEGG-----ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASA 202 (249)
T ss_dssp HHHHHHHHHHHHTTS-----SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-----CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHcc
Confidence 9884 46655554 4568888888865431 2346799999865432 2 223467888889999
Q ss_pred CCCCcEEEEEeccC
Q 023288 259 LKPGGFFVLKENIA 272 (284)
Q Consensus 259 LkpGG~lii~e~~~ 272 (284)
+.....++++.+..
T Consensus 203 ~p~~s~~~it~~~~ 216 (249)
T d1o9ga_ 203 LPAHAVIAVTDRSR 216 (249)
T ss_dssp SCTTCEEEEEESSS
T ss_pred CCCCcEEEEeCchh
Confidence 98778888887643
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.49 E-value=0.29 Score=40.80 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=70.9
Q ss_pred CCCceEEEeeccccHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHcCC----------CC--CC---CCCCCcceeEEEc
Q 023288 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAP----------EN--HM---APDMHKATNFFCV 219 (284)
Q Consensus 156 ~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S-~~~l~~ar~~~~~----------~~--~~---~~~~~~~~~~~~~ 219 (284)
.+...|+-+|||.=.....+...... +..+|+. |.+++.=++.+.. .. .. ......+..++.+
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~-~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~ 173 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPH-LAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 173 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTT-EEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCC-cEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence 34568999999988777767655444 5555544 3333322221110 00 00 0001235667778
Q ss_pred CCCCCC---------CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEeccC
Q 023288 220 PLQDFT---------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (284)
Q Consensus 220 d~~~~~---------~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~~ 272 (284)
|+.+.. +....--++++-.++.|++.++..++++.+.+.. |+|.+++.|.+.
T Consensus 174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~ 234 (328)
T d1rjda_ 174 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG 234 (328)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCC
Confidence 887642 1223345788888999999999999999999887 456777778763
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.78 E-value=0.41 Score=35.44 Aligned_cols=95 Identities=13% Similarity=-0.080 Sum_probs=61.5
Q ss_pred CCCCceEEEeecc-ccHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEc-CCCCC------C
Q 023288 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF------T 225 (284)
Q Consensus 155 ~~~~~~VLDiGcG-tG~~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~-d~~~~------~ 225 (284)
.+++.+||=+||| .|.++..+++. +...|+++|.++.-++.+++.-... ++.. +-.+. .
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~------------~i~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE------------CINPQDFSKPIQEVLIE 93 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE------------EECGGGCSSCHHHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcE------------EEeCCchhhHHHHHHHH
Confidence 6688899999887 34455555554 4568999999999999998764331 1111 11110 0
Q ss_pred CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 ~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+.+|+|+-.-.- . ..++.+..++++||.+++.-
T Consensus 94 ~~~~g~D~vid~~G~------~--~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 94 MTDGGVDYSFECIGN------V--KVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp HTTSCBSEEEECSCC------H--HHHHHHHHTBCTTTCEEEEC
T ss_pred HcCCCCcEeeecCCC------H--HHHHHHHHhhcCCceeEEEE
Confidence 123569999865331 2 57788899999998776653
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.62 E-value=0.12 Score=41.49 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=46.7
Q ss_pred ccHHHHHHHHHhhcCCccCCCCceEEEeeccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCC
Q 023288 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 137 ~~~~~l~~~~~~~l~~~~~~~~~~VLDiGcGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
-+..++..++... ..++..|||.=||+|..+.+.... ..+.+|+|+++...+.|++++..
T Consensus 192 kP~~L~~~~I~~~-----s~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 192 KPAAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp CCHHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhh-----cCCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHH
Confidence 3445666665543 357889999999999999866544 44699999999999999998754
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.26 E-value=0.041 Score=41.54 Aligned_cols=97 Identities=13% Similarity=0.004 Sum_probs=63.6
Q ss_pred CCceEEEee--ccccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCC-CCCCCceeE
Q 023288 157 QHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDV 233 (284)
Q Consensus 157 ~~~~VLDiG--cGtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~ 233 (284)
++.+||=-| .|.|..+..+++....+|+++.-|++-.+.+++.-... .++....+.... ....+.+|+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~---------vi~~~~~~~~~~~~~~~~gvd~ 93 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASE---------VISREDVYDGTLKALSKQQWQG 93 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSE---------EEEHHHHCSSCCCSSCCCCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccc---------eEeccchhchhhhcccCCCceE
Confidence 445688666 35677888888776667999999998889888775431 111111111111 123457999
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
|+-.-. . ..+.+..+.|+|+|++++.-..
T Consensus 94 vid~vg-------g--~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 94 AVDPVG-------G--KQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp EEESCC-------T--HHHHHHHTTEEEEEEEEECCCS
T ss_pred EEecCc-------H--HHHHHHHHHhccCceEEEeecc
Confidence 875432 2 5778899999999999986443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.06 E-value=0.46 Score=35.30 Aligned_cols=97 Identities=12% Similarity=-0.132 Sum_probs=59.5
Q ss_pred CCCCceEEEeeccccH-HHHHHHHh-CCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------C
Q 023288 155 NNQHLVALDCGSGIGR-ITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------P 226 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~-~s~~l~~~-~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~ 226 (284)
.+++.+||=+|||.+. ....+++. +...|+++|.+++-++.+++..... .+...+-.+.. .
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~-----------~i~~~~~~~~~~~~~~~~ 94 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE-----------CVNPQDYKKPIQEVLTEM 94 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSE-----------EECGGGCSSCHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCee-----------EEecCCchhHHHHHHHHH
Confidence 6788999999997544 44444444 4458999999999999998875331 11111111110 1
Q ss_pred CCCceeEEEecchhccCChhhHHHHHHHHHhcCCCC-cEEEEEec
Q 023288 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (284)
Q Consensus 227 ~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpG-G~lii~e~ 270 (284)
..+.+|+|+-..... ..+..+...+++| |.+++.-.
T Consensus 95 ~~~G~D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 95 SNGGVDFSFEVIGRL--------DTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp TTSCBSEEEECSCCH--------HHHHHHHHHBCTTTCEEEECSC
T ss_pred hcCCCCEEEecCCch--------hHHHHHHHHHhcCCcceEEecC
Confidence 235799988654421 4556666777776 56666533
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.89 E-value=0.77 Score=34.49 Aligned_cols=91 Identities=9% Similarity=-0.015 Sum_probs=58.4
Q ss_pred CceEEEee--ccccHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC-----CCCC
Q 023288 158 HLVALDCG--SGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PETG 229 (284)
Q Consensus 158 ~~~VLDiG--cGtG~~s~~l~~~~~-~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 229 (284)
+.+||=.| .|.|..+..+++... ..|+++.-+++......+..... ..+...-+++. ..+.
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad-----------~vi~~~~~~~~~~~~~~~~~ 99 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD-----------AAVNYKTGNVAEQLREACPG 99 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS-----------EEEETTSSCHHHHHHHHCTT
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce-----------EEeeccchhHHHHHHHHhcc
Confidence 36788877 568999999998654 46777888877766665544331 11111111111 1124
Q ss_pred ceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 230 ~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
.+|+|+-+-. . ..+....+.|+|||+++..
T Consensus 100 GvDvv~D~vG-------g--~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 100 GVDVYFDNVG-------G--DISNTVISQMNENSHIILC 129 (187)
T ss_dssp CEEEEEESSC-------H--HHHHHHHTTEEEEEEEEEC
T ss_pred CceEEEecCC-------c--hhHHHHhhhccccccEEEe
Confidence 6999984432 2 4678899999999999875
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=88.76 E-value=0.62 Score=34.94 Aligned_cols=95 Identities=12% Similarity=-0.011 Sum_probs=61.0
Q ss_pred CceEEEeec--cccHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 158 HLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 158 ~~~VLDiGc--GtG~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
+.+||=.|+ |.|..+..+++....+|+++.-+++..+.+++.-... .+++...+.. -......+|.|+
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~---------vi~~~~~~~~-~~l~~~~~~~vv 101 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASR---------VLPRDEFAES-RPLEKQVWAGAI 101 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEE---------EEEGGGSSSC-CSSCCCCEEEEE
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcccc---------ccccccHHHH-HHHHhhcCCeeE
Confidence 346776553 4677888888877778999999999999887753320 1111111111 123345688875
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEEecc
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e~~ 271 (284)
- .+. . ..+.+..+.|+++|++++.-+.
T Consensus 102 D-----~Vg--g--~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 102 D-----TVG--D--KVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp E-----SSC--H--HHHHHHHHTEEEEEEEEECCCT
T ss_pred E-----Ecc--h--HHHHHHHHHhccccceEeeccc
Confidence 2 222 2 5688899999999999987543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=88.42 E-value=0.57 Score=34.65 Aligned_cols=101 Identities=12% Similarity=0.017 Sum_probs=56.7
Q ss_pred ceEEEeeccccH--HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCC-CCCCCcceeEEEcCCCCCCCCCCceeEEE
Q 023288 159 LVALDCGSGIGR--ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTPETGRYDVIW 235 (284)
Q Consensus 159 ~~VLDiGcGtG~--~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~Iv 235 (284)
.+|.=||+|.-. ++..|.+.+. +|+++|.++.-++..++.-...... .............|..+. -..+|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---VKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---HTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---hcCCCEEE
Confidence 467778998533 3333444444 6999999999888887653210000 000000011111121110 13578888
Q ss_pred ecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 236 ~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
..- +......+++++...|+++-.+++.
T Consensus 78 i~v-----~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 78 IVV-----PAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp ECS-----CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred EEE-----chhHHHHHHHHhhhccCCCCEEEEe
Confidence 643 2335668999999999998876653
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.13 E-value=1.6 Score=34.21 Aligned_cols=70 Identities=20% Similarity=0.179 Sum_probs=49.6
Q ss_pred CCceEEEeecccc---HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------CC
Q 023288 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG---~~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 227 (284)
+++++|=-|++.| ..+..|++.+. +|+.+|.++.-++...+... ++..+++|+.+.. -.
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~d~~~v~~~~~~ 73 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP-----------GIEPVCVDLGDWEATERALGS 73 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 5678888898877 34555665666 59999999998888776653 3567788887642 12
Q ss_pred CCceeEEEecc
Q 023288 228 TGRYDVIWVQW 238 (284)
Q Consensus 228 ~~~fD~Iv~~~ 238 (284)
-++.|++|.+-
T Consensus 74 ~g~iDilVnnA 84 (244)
T d1pr9a_ 74 VGPVDLLVNNA 84 (244)
T ss_dssp CCCCCEEEECC
T ss_pred hCCceEEEecc
Confidence 35799988654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=87.92 E-value=0.95 Score=31.71 Aligned_cols=88 Identities=13% Similarity=-0.017 Sum_probs=48.5
Q ss_pred EEEeeccccHHHHHHHH---hCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCceeE
Q 023288 161 ALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV 233 (284)
Q Consensus 161 VLDiGcGtG~~s~~l~~---~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~ 233 (284)
++=+|+| .++..+++ .....|+.+|.+++.++.++... ...+.+|..+.. ..-...|.
T Consensus 3 ~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~-------------~~~~~gd~~~~~~l~~a~i~~a~~ 67 (134)
T d2hmva1 3 FAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA-------------THAVIANATEENELLSLGIRNFEY 67 (134)
T ss_dssp EEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC-------------SEEEECCTTCTTHHHHHTGGGCSE
T ss_pred EEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC-------------CcceeeecccchhhhccCCccccE
Confidence 4445554 55444443 33346999999999988775432 345667877643 11235777
Q ss_pred EEecchhccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 234 Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
|++... +.+-...+-.+.+.+.|...++..
T Consensus 68 vi~~~~-----~~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 68 VIVAIG-----ANIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp EEECCC-----SCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEcC-----chHHhHHHHHHHHHHcCCCcEEee
Confidence 665433 112223333444445566666654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.47 E-value=1 Score=31.44 Aligned_cols=85 Identities=13% Similarity=0.013 Sum_probs=56.3
Q ss_pred ccccHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC----CCCCceeEEEecchh
Q 023288 166 SGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQWCI 240 (284)
Q Consensus 166 cGtG~~s~~l~~~~~~-~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~fD~Iv~~~~l 240 (284)
||.|..+..+++..-. .++.+|.++...+..+.. .+.++.+|..+.. ..-.+.+.+++...
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-------------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~- 71 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-------------GANFVHGDPTRVSDLEKANVRGARAVIVNLE- 71 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-------------TCEEEESCTTSHHHHHHTTCTTCSEEEECCS-
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-------------CccccccccCCHHHHHHhhhhcCcEEEEecc-
Confidence 6778889988875432 799999999988877543 2567888877632 22346777776432
Q ss_pred ccCChhhHHHHHHHHHhcCCCCcEEEEE
Q 023288 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (284)
Q Consensus 241 ~~~~~~~~~~~l~~~~r~LkpGG~lii~ 268 (284)
++.....+....+.+.|...++..
T Consensus 72 ----~d~~n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 72 ----SDSETIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp ----SHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred ----chhhhHHHHHHHHHHCCCceEEEE
Confidence 223334455566778888876665
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=87.28 E-value=0.38 Score=36.42 Aligned_cols=97 Identities=7% Similarity=-0.060 Sum_probs=53.1
Q ss_pred CCCCceEEEeec---cccHHHHHHHHhCCCcEEEEe----CCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC--
Q 023288 155 NNQHLVALDCGS---GIGRITKNLLIRYFNEVDLLE----PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (284)
Q Consensus 155 ~~~~~~VLDiGc---GtG~~s~~l~~~~~~~v~gvD----~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 225 (284)
..++.+||=+.+ |.|..+..+++....+|+++- -+++..+.+++.-.. ..+.....+..++.
T Consensus 26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---------~vi~~~~~~~~~~~~~ 96 (189)
T d1gu7a2 26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---------QVITEDQNNSREFGPT 96 (189)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---------EEEEHHHHHCGGGHHH
T ss_pred CCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc---------EEEeccccchhHHHHH
Confidence 556677777733 356777777776555677763 333344445444222 11111111222111
Q ss_pred ------CCCCceeEEEecchhccCChhhHHHHHHHHHhcCCCCcEEEEEe
Q 023288 226 ------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (284)
Q Consensus 226 ------~~~~~fD~Iv~~~~l~~~~~~~~~~~l~~~~r~LkpGG~lii~e 269 (284)
...+.+|+|+-+ +. . ..+....+.|+|+|++++.=
T Consensus 97 v~~~~~~~g~~vdvv~D~-----vg--~--~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 97 IKEWIKQSGGEAKLALNC-----VG--G--KSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHHHHHTCCEEEEEES-----SC--H--HHHHHHHHTSCTTCEEEECC
T ss_pred HHHHHhhccCCceEEEEC-----CC--c--chhhhhhhhhcCCcEEEEEC
Confidence 012468988843 22 1 35567789999999998764
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.20 E-value=2 Score=31.35 Aligned_cols=47 Identities=9% Similarity=-0.123 Sum_probs=35.2
Q ss_pred CCCCceEEEeeccccHHHH-HHHHh-CCCcEEEEeCCHHHHHHHHHHcC
Q 023288 155 NNQHLVALDCGSGIGRITK-NLLIR-YFNEVDLLEPVSHFLDAARESLA 201 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~-~l~~~-~~~~v~gvD~S~~~l~~ar~~~~ 201 (284)
.+++.+||=+|||.+.... .+++. +...|+++|.+++-++.+++.-.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 6788899999999855443 33333 44489999999999999987643
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=86.24 E-value=0.52 Score=40.25 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=38.9
Q ss_pred CCCCceEEEeeccccHHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHcCC
Q 023288 155 NNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAP 202 (284)
Q Consensus 155 ~~~~~~VLDiGcGtG~~s~~l~~~~---~~~v~gvD~S~~~l~~ar~~~~~ 202 (284)
..++..++||||-.|..+..++... ..+|+++|+++...+..++++..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~ 260 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 260 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4577899999999999888776532 24799999999999999887643
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=83.09 E-value=5.3 Score=31.24 Aligned_cols=59 Identities=19% Similarity=-0.004 Sum_probs=42.8
Q ss_pred CCceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCC
Q 023288 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (284)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~ 223 (284)
+++++|=.|+..|. ++..+++.+. +|+.++.++.-++.+.+.+... ...+.++.+|+.+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~-------~~~~~~~~~D~s~ 66 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREK-------GLNVEGSVCDLLS 66 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT-------TCCEEEEECCTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc-------CCCceEEEeecCC
Confidence 56788988987763 4555666666 5999999998888877766543 2346677788765
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.75 E-value=4.6 Score=31.27 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=47.3
Q ss_pred CCceEEEeeccccH---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHcCCCCCCCCCCCcceeEEEcCCCCCC------CC
Q 023288 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (284)
Q Consensus 157 ~~~~VLDiGcGtG~---~s~~l~~~~~~~v~gvD~S~~~l~~ar~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 227 (284)
+++++|=-|++.|. .+..|++.+. +|+.+|.+++-++...+... ++.++++|+.+.. -.
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~ 71 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP-----------GIEPVCVDLGDWDATEKALGG 71 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 45678878877663 3455555565 59999999988877766643 3567788887642 11
Q ss_pred CCceeEEEec
Q 023288 228 TGRYDVIWVQ 237 (284)
Q Consensus 228 ~~~fD~Iv~~ 237 (284)
-++.|++|.+
T Consensus 72 ~g~iDilVnn 81 (242)
T d1cyda_ 72 IGPVDLLVNN 81 (242)
T ss_dssp CCCCSEEEEC
T ss_pred cCCCeEEEEC
Confidence 2678998865
|