Citrus Sinensis ID: 023308

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MADNSGTGSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
ccccccccccccEEEccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHcccccccHHHcccHHHHHccccc
cccccccccEEccccccHHccccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHEEEEEEEEEEEEEEEHcccccHccccccccHHHHHHHHHHHHHHcccccccccccccccHEEEEcccccEEEEEEcHHHHHHHHHHHHHHHEcccccHHHHHHHHHHHHccccc
madnsgtgsngvcvtfkdcedaiqncpssaapppppscgtkdsvyFSVPFMQKLMAEILGTYFMIFAGCASVVVNlnnekivslpgisIVWGLVVMVLVYSLGhisgahfnpsvtiahatckrfpwkqvppyilcQVLGSTLAAGTLRLLFQEKQdqfagtlpagsNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMfagpitgasmnparslgpaivssqykgLWIYivapplgatagAWVYNMVRYTDKPLREITKSASFLKGAGRS
madnsgtgsngVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKplreitksasflkgagrs
MADNSGTGSNGVCVTFKDCEDAIQNCpssaapppppsCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
******************************************SVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLR***************
*******************************************VYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVR**********************
*********NGVCVTFKDCEDAIQNCP***********GTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
**************************PSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
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MADNSGTGSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
Q8LFP7294 Aquaporin NIP1-2 OS=Arabi yes no 0.964 0.931 0.683 1e-106
Q8VZW1296 Aquaporin NIP1-1 OS=Arabi no no 0.975 0.935 0.649 1e-102
P08995271 Nodulin-26 OS=Glycine max no no 0.943 0.988 0.622 4e-98
Q40746284 Aquaporin NIP1-1 OS=Oryza yes no 0.838 0.838 0.684 5e-95
Q9ATN4282 Aquaporin NIP1-1 OS=Zea m N/A no 0.834 0.840 0.654 8e-89
Q0DK16286 Aquaporin NIP1-3 OS=Oryza no no 0.908 0.902 0.605 4e-87
Q0JPT5303 Aquaporin NIP1-2 OS=Oryza no no 0.841 0.788 0.607 9e-86
Q9FIZ9283 Putative aquaporin NIP4-1 no no 0.876 0.879 0.566 3e-81
Q8W036283 Probable aquaporin NIP4-2 no no 0.883 0.886 0.572 5e-81
P49173270 Probable aquaporin NIP-ty N/A no 0.802 0.844 0.621 1e-79
>sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2 Back     alignment and function desciption
 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/291 (68%), Positives = 230/291 (79%), Gaps = 17/291 (5%)

Query: 1   MADNSGTGSNG----VCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVY-FSVPFMQKLM 55
           MA+ SG G +     V V  K+ ED  Q    +   P       +DS+   SVPF+QKLM
Sbjct: 1   MAEISGNGGDARDGAVVVNLKE-EDEQQQQQQAIHKP----LKKQDSLLSISVPFLQKLM 55

Query: 56  AEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVT 115
           AE+LGTYF+IFAGCA+V VN  ++K V+LPGI+IVWGL VMVLVYSLGHISGAHFNP+VT
Sbjct: 56  AEVLGTYFLIFAGCAAVAVNTQHDKAVTLPGIAIVWGLTVMVLVYSLGHISGAHFNPAVT 115

Query: 116 IAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSNI 168
           IA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF         K D F GTLP+GSN+
Sbjct: 116 IAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSNL 175

Query: 169 QAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSL 228
           Q+FV+EFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNV+ AGP++GASMNP RSL
Sbjct: 176 QSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVIIAGPVSGASMNPGRSL 235

Query: 229 GPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 279
           GPA+V S Y+GLWIYIV+P +GA +GAWVYNMVRYTDKPLREITKS SFLK
Sbjct: 236 GPAMVYSCYRGLWIYIVSPIVGAVSGAWVYNMVRYTDKPLREITKSGSFLK 286
Water channel probably required to promote glycerol permeability and water transport across cell membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZW1|NIP11_ARATH Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|P08995|NO26_SOYBN Nodulin-26 OS=Glycine max PE=1 SV=2 Back     alignment and function description
>sp|Q40746|NIP11_ORYSJ Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATN4|NIP11_MAIZE Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q0DK16|NIP13_ORYSJ Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q0JPT5|NIP12_ORYSJ Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2 Back     alignment and function description
>sp|Q9FIZ9|NIP41_ARATH Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=3 SV=1 Back     alignment and function description
>sp|Q8W036|NIP42_ARATH Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2 Back     alignment and function description
>sp|P49173|NIP1_NICAL Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
255562536271 Aquaporin NIP1.1, putative [Ricinus comm 0.950 0.996 0.754 1e-120
224116768242 predicted protein [Populus trichocarpa] 0.841 0.987 0.825 1e-115
359483792282 PREDICTED: aquaporin NIP1-2 [Vitis vinif 0.954 0.960 0.719 1e-112
388506778272 unknown [Lotus japonicus] 0.943 0.985 0.717 1e-110
307136182276 aquaporin [Cucumis melo subsp. melo] 0.950 0.978 0.698 1e-109
449508562276 PREDICTED: aquaporin NIP1-2-like [Cucumi 0.950 0.978 0.698 1e-109
363806664273 uncharacterized protein LOC100812577 [Gl 0.936 0.974 0.698 1e-108
224079011226 aquaporin, MIP family, NIP subfamily [Po 0.795 1.0 0.831 1e-108
357519149269 Aquaporin NIP1-2 [Medicago truncatula] g 0.933 0.985 0.678 1e-108
301072335271 nodulin 26-like intrinsic protein [Fraga 0.954 1.0 0.690 1e-108
>gi|255562536|ref|XP_002522274.1| Aquaporin NIP1.1, putative [Ricinus communis] gi|223538527|gb|EEF40132.1| Aquaporin NIP1.1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/285 (75%), Positives = 245/285 (85%), Gaps = 15/285 (5%)

Query: 1   MADNSGTGSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVY-FSVPFMQKLMAEIL 59
           MA+ SG G++GV +  KD               PPPS  +KDSV  FSVPFMQKL+AE++
Sbjct: 1   MAEISGNGNHGVVLDIKDVN-------------PPPSA-SKDSVLSFSVPFMQKLIAEMV 46

Query: 60  GTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHA 119
           GTYF+IFAGC SV VNLN +K+V+LPGISIVWGL VMVLVYS+GHISGAHFNP+VT+A A
Sbjct: 47  GTYFLIFAGCTSVAVNLNFDKVVTLPGISIVWGLAVMVLVYSVGHISGAHFNPAVTLAFA 106

Query: 120 TCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITF 179
           TCKRFPWKQVP YI CQV+GSTLAAGT+RL+F  KQD F GT+PAGS++Q+FV+EFIITF
Sbjct: 107 TCKRFPWKQVPAYIACQVIGSTLAAGTIRLIFTGKQDHFTGTMPAGSDMQSFVVEFIITF 166

Query: 180 YLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKG 239
           YLMF+ISGVATDNRAIGELAGLAVG+TVLLNVMFAGPI+GASMNPARSLGPAIVS +YKG
Sbjct: 167 YLMFIISGVATDNRAIGELAGLAVGATVLLNVMFAGPISGASMNPARSLGPAIVSHKYKG 226

Query: 240 LWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS 284
           LWIYIV+P LGA AGAWVYNM+RYTDKPLREITKSASFLK  GR+
Sbjct: 227 LWIYIVSPTLGAQAGAWVYNMIRYTDKPLREITKSASFLKSTGRA 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116768|ref|XP_002317387.1| predicted protein [Populus trichocarpa] gi|222860452|gb|EEE97999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483792|ref|XP_002264957.2| PREDICTED: aquaporin NIP1-2 [Vitis vinifera] gi|297740553|emb|CBI30735.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388506778|gb|AFK41455.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|307136182|gb|ADN34021.1| aquaporin [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|449508562|ref|XP_004163347.1| PREDICTED: aquaporin NIP1-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|363806664|ref|NP_001242005.1| uncharacterized protein LOC100812577 [Glycine max] gi|255646225|gb|ACU23597.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224079011|ref|XP_002305717.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222848681|gb|EEE86228.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357519149|ref|XP_003629863.1| Aquaporin NIP1-2 [Medicago truncatula] gi|355523885|gb|AET04339.1| Aquaporin NIP1-2 [Medicago truncatula] gi|388495656|gb|AFK35894.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|301072335|gb|ADK56129.1| nodulin 26-like intrinsic protein [Fragaria chiloensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.841 0.812 0.761 5.9e-96
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.982 0.942 0.636 1.1e-92
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 0.820 0.823 0.613 1e-75
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.897 0.901 0.575 1.3e-75
TAIR|locus:2826185323 NIP3;1 "NOD26-like intrinsic p 0.799 0.702 0.581 2.6e-70
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.806 0.795 0.556 2.2e-66
TAIR|locus:2025822305 NIP6;1 "NOD26-like intrinsic p 0.771 0.718 0.5 5.5e-54
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.764 0.713 0.504 8e-53
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.823 0.785 0.425 1.7e-50
TAIR|locus:2082385275 NIP7;1 "NOD26-like intrinsic p 0.788 0.814 0.405 8.7e-40
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 188/247 (76%), Positives = 216/247 (87%)

Query:    41 KDSVY-FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLV 99
             +DS+   SVPF+QKLMAE+LGTYF+IFAGCA+V VN  ++K V+LPGI+IVWGL VMVLV
Sbjct:    40 QDSLLSISVPFLQKLMAEVLGTYFLIFAGCAAVAVNTQHDKAVTLPGIAIVWGLTVMVLV 99

Query:   100 YSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF---QE--- 153
             YSLGHISGAHFNP+VTIA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF   Q+   
Sbjct:   100 YSLGHISGAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCS 159

Query:   154 -KQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVM 212
              K D F GTLP+GSN+Q+FV+EFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNV+
Sbjct:   160 GKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVI 219

Query:   213 FAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREIT 272
              AGP++GASMNP RSLGPA+V S Y+GLWIYIV+P +GA +GAWVYNMVRYTDKPLREIT
Sbjct:   220 IAGPVSGASMNPGRSLGPAMVYSCYRGLWIYIVSPIVGAVSGAWVYNMVRYTDKPLREIT 279

Query:   273 KSASFLK 279
             KS SFLK
Sbjct:   280 KSGSFLK 286
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0080170 "hydrogen peroxide transmembrane transport" evidence=IDA
GO:0015105 "arsenite transmembrane transporter activity" evidence=IDA
GO:0015700 "arsenite transport" evidence=IDA
GO:0046685 "response to arsenic-containing substance" evidence=RCA;IMP
GO:0006857 "oligopeptide transport" evidence=RCA
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40746NIP11_ORYSJNo assigned EC number0.68480.83800.8380yesno
P49173NIP1_NICALNo assigned EC number0.62120.80280.8444N/Ano
Q8LFP7NIP12_ARATHNo assigned EC number0.68380.96470.9319yesno
Q9ATN4NIP11_MAIZENo assigned EC number0.65400.83450.8404N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XI.3152.1
hypothetical protein (242 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_scaffold_44000008
glycerol kinase (EC-2.7.1.30) (519 aa)
•     • 0.418

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-136
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-111
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 5e-76
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 3e-66
pfam00230218 pfam00230, MIP, Major intrinsic protein 7e-66
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 8e-63
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 2e-58
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 1e-55
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 3e-44
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 5e-33
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-27
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 7e-18
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 1e-17
COG0580 241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-05
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information 
 Score =  387 bits (995), Expect = e-136
 Identities = 190/291 (65%), Positives = 222/291 (76%), Gaps = 14/291 (4%)

Query: 1   MADNSGTG-----SNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTKDSVYFSVPFMQKLM 55
           MAD SG G        V V  K+  +  Q   +   P P     +  SV  SVPF+QKL+
Sbjct: 1   MADISGNGYGNAREGVVMVNLKEEVEHQQEMEAIHNPKPLKKQDSLLSV--SVPFLQKLI 58

Query: 56  AEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVT 115
           AE+LGTYF++F GCASVVVN+ N+ +V+LPGI+IVWGL +MVL+YSLGHISGAH NP+VT
Sbjct: 59  AEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVT 118

Query: 116 IAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF-------QEKQDQFAGTLPAGSNI 168
           IA A+C RFP KQVP Y++ QV+GSTLAA TLRLLF         K D F G+ P GS++
Sbjct: 119 IAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDL 178

Query: 169 QAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSL 228
           QAFVMEFI+TFYLMF+ISGVATDNRAIGELAGLA+GSTVLLNV+ A P++ ASMNP RSL
Sbjct: 179 QAFVMEFIVTFYLMFIISGVATDNRAIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSL 238

Query: 229 GPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 279
           GPA+V   YKG+WIYIVAP LGA AGAWVYN VRYTDKPLREITKS SFLK
Sbjct: 239 GPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREITKSGSFLK 289

Length = 296
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00184 296 aquaporin NIP1; Provisional 99.6
PLN00026 298 aquaporin NIP; Provisional 99.6
PLN00183274 putative aquaporin NIP7; Provisional 99.58
PLN00182283 putative aquaporin NIP4; Provisional 99.58
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.56
PLN00166 250 aquaporin TIP2; Provisional 99.51
PLN00167 256 aquaporin TIP5; Provisional 99.5
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.48
PLN00027 252 aquaporin TIP; Provisional 99.45
PTZ00016 294 aquaglyceroporin; Provisional 99.45
PRK05420 231 aquaporin Z; Provisional 99.44
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.4
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.35
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.33
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.07
PRK10805285 formate transporter; Provisional 95.2
COG2116265 FocA Formate/nitrite family of transporters [Inorg 94.09
PRK11562268 nitrite transporter NirC; Provisional 91.76
PRK09713282 focB putative formate transporter; Provisional 89.53
TIGR00790239 fnt formate/nitrite transporter. symport. HCO2 - e 85.03
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.8e-55  Score=396.70  Aligned_cols=239  Identities=73%  Similarity=1.220  Sum_probs=210.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCC
Q 023308           46 FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFP  125 (284)
Q Consensus        46 ~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~  125 (284)
                      .+.+++|++++||+|||+|+|++|+++..+...+....++.++++||+++++.+++++++||||+|||||+++++.|+++
T Consensus        49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~  128 (296)
T PLN00184         49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFP  128 (296)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCC
Confidence            34678999999999999999999998765433322235677899999999999999999999999999999999999999


Q ss_pred             CCcccchhhhhhhHHHHHHHHHHHHhhcccc-------cccccCCCCcchhhHHHHHHHHHHHHHHHhhhccccccccch
Q 023308          126 WKQVPPYILCQVLGSTLAAGTLRLLFQEKQD-------QFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGEL  198 (284)
Q Consensus       126 ~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-------~~~~~~p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~~  198 (284)
                      |.++++||++|++||++|+++++.+++....       ...++.|..+..++|+.|+++||+|+++++++..+++..+.+
T Consensus       129 ~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~~  208 (296)
T PLN00184        129 LKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGEL  208 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCcc
Confidence            9999999999999999999999998853211       122345556888999999999999999999886666555568


Q ss_pred             hhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhhCCCceeeeeecchHHHHHHHHHHHHHhcCCCcccccccccccc
Q 023308          199 AGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFL  278 (284)
Q Consensus       199 ~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~la~~l~~~~~~~~~~~~~~~~~~~~~  278 (284)
                      .++.||+++.+.+++.+++||++|||||+|||+++.+.|+++||||++|++|+++|+++|+++..++++.++.+++.+|+
T Consensus       209 ~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~~~~~~~~  288 (296)
T PLN00184        209 AGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREITKSGSFL  288 (296)
T ss_pred             hHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhhccchHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCC
Q 023308          279 KGAGRS  284 (284)
Q Consensus       279 ~~~~~~  284 (284)
                      |+.+++
T Consensus       289 ~~~~~~  294 (296)
T PLN00184        289 KTVRIG  294 (296)
T ss_pred             hhhccC
Confidence            988763

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PRK09713 focB putative formate transporter; Provisional Back     alignment and domain information
>TIGR00790 fnt formate/nitrite transporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 5e-29
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 6e-26
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 8e-26
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 5e-25
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 6e-25
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 6e-25
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 9e-25
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 1e-24
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 3e-24
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 4e-24
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 1e-23
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 1e-23
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 2e-23
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 1e-22
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 7e-22
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 8e-22
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 4e-21
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 9e-20
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 9e-18
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 2e-17
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-17
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 1e-16
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 2e-16
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-15
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-15
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-15
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-15
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-15
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 1e-11
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 2e-07
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 122/239 (51%), Gaps = 35/239 (14%)
Query: 52  QKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLP-----------------GISIVWGLV 94
           ++  AE++GT+ ++F G  + V+ L        P                  I + + L 
Sbjct: 7   KRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALA 66
Query: 95  VMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEK 154
           +  ++YSLG ISGAH NP+VTIA  +  RFP ++V PYI+ Q +G+ L +    LLF   
Sbjct: 67  IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGS----LLFLAC 122
Query: 155 QDQFAGTL---------PAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGS 205
               A T+         P     QA + E I TF LM VI GVA D RA    AGL +G 
Sbjct: 123 VGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGL 182
Query: 206 TVLLNVMFAGPITGASMNPARSLGPAIVSSQYK-GLW----IYIVAPPLGATAGAWVYN 259
           TV   +   G ITG+S+NPAR+ GP +  S     LW    IY++ P +GA A AW+YN
Sbjct: 183 TVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYN 241
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 4e-89
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-88
2o9g_A234 Aquaporin Z; integral membrane protein, structural 7e-04
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 2e-88
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 1e-87
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-86
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-86
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-85
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 3e-79
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-75
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 2e-70
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-70
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 2e-05
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 6e-69
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 4e-66
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
 Score =  264 bits (677), Expect = 4e-89
 Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 14/246 (5%)

Query: 33  PPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNL-NNEKIVSLPGISIVW 91
                   ++  + S    +KL+AE  GT++++F GC S V      E  +   G+++ +
Sbjct: 12  HHHHHHHHENLYFQSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAF 71

Query: 92  GLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLF 151
           GL V+ + Y++G ISG HFNP+V++      RFP   + PY++ QV G+ +AA  L ++ 
Sbjct: 72  GLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIA 131

Query: 152 QEK---------QDQFAGTLPAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGL 201
             K          + +    P G S + A ++E I+T + + VI G +T  R     A +
Sbjct: 132 TGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILG-STHGRVPAGFAPI 190

Query: 202 AVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQY--KGLWIYIVAPPLGATAGAWVYN 259
           A+G  + L  + + P+T  S+NPARS G A+    +  + LW++ +AP +G  AGA ++ 
Sbjct: 191 AIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWK 250

Query: 260 MVRYTD 265
           +    D
Sbjct: 251 LFGEKD 256
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.57
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.52
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.43
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.41
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.4
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.37
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.36
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.35
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.34
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.34
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.34
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.3
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.26
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 94.92
3kly_A280 Putative formate transporter 1; membrane protein, 90.49
4fc4_A261 Nitrite transporter NIRC; alpha-helical inner memb 84.97
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1.1e-54  Score=396.97  Aligned_cols=260  Identities=28%  Similarity=0.392  Sum_probs=214.8

Q ss_pred             CCCCcccceeccccccccCCCCCCCCCCCCCCCC---CCcccchHHHHHHHHHHHHHHHHHHHhhhhhhhcc--cCCCcc
Q 023308            8 GSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTK---DSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNL--NNEKIV   82 (284)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~--~~~~~~   82 (284)
                      |..|||-+++..-+.+-+++++.++++.|+....   .++.+..+++|++++||+|||+|+|++|++++...  ......
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~   85 (340)
T 3iyz_A            6 HHHHHHGMASMTGGQQMGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPV   85 (340)
T ss_pred             ccccccchhhcChhhhcCCCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Confidence            4445555555555544467888888888877532   34556678999999999999999999999876432  122234


Q ss_pred             CchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhcccccccc--
Q 023308           83 SLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG--  160 (284)
Q Consensus        83 ~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~--  160 (284)
                      +++.++++||+++++.+++++++||||+|||||+++++.|+++|.+++.||++|++||++|+++++.++++......+  
T Consensus        86 g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~  165 (340)
T 3iyz_A           86 DMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVT  165 (340)
T ss_pred             chHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeec
Confidence            577899999999999999999999999999999999999999999999999999999999999999988654322111  


Q ss_pred             -cCCCCcchhhHHHHHHHHHHHHHHHhhhcccccc-ccchhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhhCCC
Q 023308          161 -TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA-IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYK  238 (284)
Q Consensus       161 -~~p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~-~~~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~  238 (284)
                       +.+..+..++|+.|+++||+|+++++++.++++. .....|+.||+++.+.+..++++||++|||||+|||+++.++|.
T Consensus       166 ~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~  245 (340)
T 3iyz_A          166 TVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWE  245 (340)
T ss_pred             cCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCCcccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHccCCC
Confidence             2344578899999999999999999997544443 23578999999998888888899999999999999999999999


Q ss_pred             ceeeeeecchHHHHHHHHHHHHHhcCCCc
Q 023308          239 GLWIYIVAPPLGATAGAWVYNMVRYTDKP  267 (284)
Q Consensus       239 ~~wvy~v~p~~Ga~la~~l~~~~~~~~~~  267 (284)
                      ++||||++|++|+++|+++|++++.++.+
T Consensus       246 ~~WVywvgPiiGailaallY~~l~~p~~~  274 (340)
T 3iyz_A          246 NHWIYWVGPIIGAVLAGALYEYVFCPDVE  274 (340)
T ss_pred             cEeehhHHHHHHHHHHHHHHHHHhCCChh
Confidence            99999999999999999999999866543
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A* Back     alignment and structure
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 6e-51
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 7e-47
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 5e-05
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 6e-45
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 8e-04
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 3e-43
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 7e-04
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  165 bits (418), Expect = 6e-51
 Identities = 68/238 (28%), Positives = 113/238 (47%), Gaps = 8/238 (3%)

Query: 47  SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHIS 106
           S  F + + AE   + F +F G  + +        + +  +++ +GL +  LV ++GHIS
Sbjct: 1   SASFWRAICAEFFASLFYVFFGLGASLRWAPGP--LHVLQVALAFGLALATLVQAVGHIS 58

Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
           GAH NP+VT A     +    +   Y++ Q+LG+   A  L  +               P
Sbjct: 59  GAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHP 118

Query: 164 AGSNIQAFVMEFIITFYLMFVISGVATDNR-AIGELAGLAVGSTVLLNVMFAGPITGASM 222
             S  QA ++E  +T   +  I     + R        LAVG ++ L  +F    TGA M
Sbjct: 119 GVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGM 178

Query: 223 NPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKG 280
           NPARS  PAI++  +   W+Y V P +GA  G+ +Y+ + +    L+ +++  S LKG
Sbjct: 179 NPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVSERLSILKG 234
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.45
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.34
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.3
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.27
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-49  Score=347.91  Aligned_cols=219  Identities=28%  Similarity=0.455  Sum_probs=190.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCCCC
Q 023308           48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK  127 (284)
Q Consensus        48 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~~~  127 (284)
                      .++||++++||+|||+++|+++++.......  ..+.+.+++++|+++++.+++++++||||+|||||+++++.|+++|+
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~~~--~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~~   79 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWAPG--PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLL   79 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC-C--HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCCChh
Confidence            3689999999999999999999987644332  23456789999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHhhccccccc---ccCCCCcchhhHHHHHHHHHHHHHHHhhhcccccc-ccchhhHHH
Q 023308          128 QVPPYILCQVLGSTLAAGTLRLLFQEKQDQFA---GTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA-IGELAGLAV  203 (284)
Q Consensus       128 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~---~~~p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~-~~~~~~l~i  203 (284)
                      +++.|+++|++||++|+++++.++++......   .+.|..+..++++.|+++|++|+++++.+.++++. .....++.+
T Consensus        80 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~~~~~l~i  159 (234)
T d1ymga1          80 RAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAV  159 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCCCHHHHH
T ss_pred             heeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccCcCcceeEee
Confidence            99999999999999999999999875543322   23455688899999999999999999987644433 234678999


Q ss_pred             HHHHHHHHHHhcCCccCccchhhhHHHHHhhhCCCceeeeeecchHHHHHHHHHHHHHhcCCCcc
Q 023308          204 GSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPL  268 (284)
Q Consensus       204 g~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~la~~l~~~~~~~~~~~  268 (284)
                      |+++.+.....++.||+++||||+|||+++.++|.++|+||++|++|+++|+++|++++.++.++
T Consensus       160 g~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~  224 (234)
T d1ymga1         160 GFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKS  224 (234)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCC
T ss_pred             hHHHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999998665443
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure