Citrus Sinensis ID: 023311

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKSSAGSKKSGRQQAGDAQQGERPPECKQQ
cHHHHHHHHccccccccccccccHHHHHHHcccccccHHHHHHHccHHHHHcccccHHHHHcccccEEEEEccccccEEEEEEEcccccccccEEEEEEEEccccccccccEEEEEEEEccccccHHHHHHHcccccccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccc
ccHHHHHHHcccccccHHHHccccccccccccccccHHHHHHHHcHHHHHHHHHHccHHHHHHHHccEEEEccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEccccEEEEcccccEEEEEEEEccccccccEEEEEEEcccccHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccc
MYTKRYEIVNGvvegapnevamdqeedkateekgvpdfwltamknndvlseeiTERDEGALKFLKDikwfriddpkgfklefyfdpnpyfknsvltktyhmidedepiLEKAIGteiewypgkcltqkllkkkpkkgsknakpitkteecesffnffnppqvpeddedidEDTAEELQNQMEqdydigstirdkiiphavswftgeaiqeeeieldddeddddidededdegdddedededdeedeeddegktkkkssagskksgrqqagdaqqgerppeckqq
mytkryeivngvvegapnevamdqeedkateekgvpdfwltAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCltqkllkkkpkkgsknakpitkteecESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEeeieldddeddddidededdegdddedededdeedeeddegktkkkssagskksgrqqagdaqqgerppeckqq
MYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGkcltqkllkkkpkkgsknakPITKTEECESFFNFFNPPQVPeddedidedtaeeLQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQeeeieldddeddddidededdegdddedededdeedeeddegktkkkssagskksgRQQAGDAQQGERPPECKQQ
*******IV**************************PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLL**********************FFNFF***************************YDIGSTIRDKIIPHAVSWFTGEAI****************************************************************************
MYTKRYEIVNGVVEGAPNE*************KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLT*********************EECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEE********************************************************************C***
MYTKRYEIVNGVVEGAPNEVAM**********KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLK************ITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIE**********************************************************************
MYTKRYEIVNGVVE****************EEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQE**************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKSSAGSKKSGRQQAGDAQQGERPPECKQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
O59797393 Putative nucleosome assem yes no 0.732 0.529 0.396 1e-32
P28656391 Nucleosome assembly prote yes no 0.697 0.506 0.400 4e-32
Q5R4D4391 Nucleosome assembly prote yes no 0.700 0.508 0.398 5e-32
A6H767391 Nucleosome assembly prote yes no 0.697 0.506 0.392 6e-32
P55209391 Nucleosome assembly prote yes no 0.697 0.506 0.400 6e-32
P78920379 Putative nucleosome assem no no 0.820 0.614 0.365 2e-30
Q78ZA7375 Nucleosome assembly prote no no 0.658 0.498 0.413 2e-30
Q99733375 Nucleosome assembly prote no no 0.633 0.48 0.430 2e-30
Q9Z2G8390 Nucleosome assembly prote yes no 0.704 0.512 0.4 2e-30
Q28EB4393 Nucleosome assembly prote yes no 0.588 0.424 0.440 7e-30
>sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC364.06 PE=1 SV=1 Back     alignment and function desciption
 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/232 (39%), Positives = 130/232 (56%), Gaps = 24/232 (10%)

Query: 1   MYTKRYEIVNGVVEGAPNEV----AMDQEEDK------------ATEEKGVPDFWLTAMK 44
           ++ +R E+V G  E    E+    A D+ E K              + KG+P+FWLTAMK
Sbjct: 114 IFKRRSEVVRGADEPTEEEIKKGEAADENEKKEPTSSESKKQEGGDDTKGIPEFWLTAMK 173

Query: 45  NNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE 104
           N   LSE IT  DEGAL  L DI+   ++ P GFKLEF F  NP+F N +LTKTY+ ++E
Sbjct: 174 NVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFFTNKILTKTYYYMEE 232

Query: 105 DEP----ILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNP 159
             P    + + A G +++W     LT + + KK + K +K  + +  +   +SFFNFFNP
Sbjct: 233 SGPSNVFLYDHAEGDKVDWKENADLTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFFNP 292

Query: 160 PQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE 211
           P      E+ +E  + EL   +E DY IG   ++K+IP AV WFTGEA+  E
Sbjct: 293 PT--PPSEEDEESESPELDELLELDYQIGEDFKEKLIPRAVEWFTGEALALE 342

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4D4|NP1L1_PONAB Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1 Back     alignment and function description
>sp|A6H767|NP1L1_BOVIN Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1 Back     alignment and function description
>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1 Back     alignment and function description
>sp|P78920|YGNB_SCHPO Putative nucleosome assembly protein C2D10.11C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2D10.11c PE=2 SV=2 Back     alignment and function description
>sp|Q78ZA7|NP1L4_MOUSE Nucleosome assembly protein 1-like 4 OS=Mus musculus GN=Nap1l4 PE=1 SV=1 Back     alignment and function description
>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 OS=Homo sapiens GN=NAP1L4 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 OS=Rattus norvegicus GN=Nap1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q28EB4|NP1L1_XENTR Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
372477765377 nucleosome assembly protein [Malus x dom 1.0 0.753 0.770 1e-109
297738653 386 unnamed protein product [Vitis vinifera] 0.964 0.709 0.786 1e-106
225444889368 PREDICTED: nucleosome assembly protein 1 0.964 0.744 0.786 1e-106
359482848381 PREDICTED: nucleosome assembly protein 1 0.996 0.742 0.800 1e-105
356530387365 PREDICTED: nucleosome assembly protein 1 0.954 0.742 0.740 1e-99
224087993378 nucleosome/chromatin assembly factor gro 1.0 0.751 0.802 2e-99
255641276363 unknown [Glycine max] 0.964 0.754 0.762 4e-99
356530381359 PREDICTED: nucleosome assembly protein 1 0.943 0.746 0.744 6e-99
356530385369 PREDICTED: nucleosome assembly protein 1 0.954 0.734 0.726 1e-98
255546129372 nucleosome assembly protein, putative [R 0.996 0.760 0.804 1e-96
>gi|372477765|gb|AEX97077.1| nucleosome assembly protein [Malus x domestica] Back     alignment and taxonomy information
 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/288 (77%), Positives = 252/288 (87%), Gaps = 4/288 (1%)

Query: 1   MYTKRYEIVNGVVEG-APNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEG 59
           +YTKRY+IVNGV E  A NEVAMDQ+  KA EEKGVPDFWLTAMK NDVLSEEITERDEG
Sbjct: 90  LYTKRYDIVNGVAEVEATNEVAMDQDGGKAGEEKGVPDFWLTAMKTNDVLSEEITERDEG 149

Query: 60  ALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEW 119
           ALK LKDIKW RIDDPKGFKLEF+FD NPYFKNS+LTKTYHM+DE+EPILEKAIGTEIEW
Sbjct: 150 ALKHLKDIKWSRIDDPKGFKLEFFFDTNPYFKNSILTKTYHMVDENEPILEKAIGTEIEW 209

Query: 120 YPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQN 179
           YPGKCLTQKLLKKKP+KGSKNAKP+TKTE+C SFFNFF+PP+VP++DED+DE++AEELQN
Sbjct: 210 YPGKCLTQKLLKKKPRKGSKNAKPVTKTEDCASFFNFFSPPEVPKEDEDLDEESAEELQN 269

Query: 180 QMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEEEI--ELDDDEDDDDIDEDEDDEGDDDED 237
           QMEQDYDIGSTIRDKIIPHA SWFTGEA+  +      DDDEDD+  D+D++DE D D+D
Sbjct: 270 QMEQDYDIGSTIRDKIIPHATSWFTGEAVHGDGFDDSDDDDEDDELYDDDDEDEEDVDDD 329

Query: 238 EDEDDEEDEEDDEGKTKKKSSAGSK-KSGRQQAGDAQQGERPPECKQQ 284
           E+E+D+EDE+ DEGKT KKSSAG K KS R + GD Q GER PE KQ+
Sbjct: 330 EEEEDDEDEDQDEGKTNKKSSAGKKEKSARTEVGDGQHGERRPESKQE 377

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738653|emb|CBI27898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444889|ref|XP_002281573.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359482848|ref|XP_002280211.2| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 1 [Vitis vinifera] gi|297743095|emb|CBI35962.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530387|ref|XP_003533763.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 4 [Glycine max] Back     alignment and taxonomy information
>gi|224087993|ref|XP_002308283.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222854259|gb|EEE91806.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255641276|gb|ACU20915.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356530381|ref|XP_003533760.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356530385|ref|XP_003533762.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|255546129|ref|XP_002514124.1| nucleosome assembly protein, putative [Ricinus communis] gi|223546580|gb|EEF48078.1| nucleosome assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2164595374 NAP1;3 "AT5G56950" [Arabidopsi 0.735 0.558 0.682 5.1e-83
TAIR|locus:2050424379 NAP1;2 "AT2G19480" [Arabidopsi 0.735 0.551 0.677 7.4e-82
TAIR|locus:2120785372 NAP1;1 "AT4G26110" [Arabidopsi 0.735 0.561 0.650 5.9e-78
UNIPROTKB|F1PRE1391 NAP1L1 "Uncharacterized protei 0.637 0.462 0.388 1e-37
UNIPROTKB|A6H767391 NAP1L1 "Nucleosome assembly pr 0.637 0.462 0.388 1.6e-37
UNIPROTKB|F8W543328 NAP1L1 "Nucleosome assembly pr 0.637 0.551 0.388 1.6e-37
UNIPROTKB|H0YIV4385 NAP1L1 "Nucleosome assembly pr 0.637 0.470 0.388 1.6e-37
UNIPROTKB|P55209391 NAP1L1 "Nucleosome assembly pr 0.637 0.462 0.388 1.6e-37
UNIPROTKB|F1SGD7391 NAP1L1 "Uncharacterized protei 0.637 0.462 0.388 1.6e-37
MGI|MGI:1855693391 Nap1l1 "nucleosome assembly pr 0.637 0.462 0.388 1.6e-37
TAIR|locus:2164595 NAP1;3 "AT5G56950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 771 (276.5 bits), Expect = 5.1e-83, Sum P(2) = 5.1e-83
 Identities = 144/211 (68%), Positives = 162/211 (76%)

Query:     1 MYTKRYEIVNGV--VEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDE 58
             +Y KRYEIVNG   VEGAP +  MDQ ++K  EEKGVP FWLTA+KNNDV+SEEITERDE
Sbjct:    90 LYNKRYEIVNGATEVEGAPEDAKMDQGDEKTAEEKGVPSFWLTALKNNDVISEEITERDE 149

Query:    59 GALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIE 118
             GAL +LKDIKW +I++PKGFKLEF+FD NPYFKN++LTK YHMIDEDEP+LEKAIGTEI+
Sbjct:   150 GALIYLKDIKWCKIEEPKGFKLEFFFDQNPYFKNTLLTKAYHMIDEDEPLLEKAIGTEID 209

Query:   119 WYPGXXXXXXXXXXXXXXXXXXXXPITKTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQ 178
             WYPG                    PITKTE+CESFFNFFNPPQVP             LQ
Sbjct:   210 WYPGKCLTQKILKKKPKKGAKNAKPITKTEDCESFFNFFNPPQVPDDDEDIDEERAEELQ 269

Query:   179 NQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQ 209
             N MEQDYDIGSTIR+KIIPHAVSWFTGEAI+
Sbjct:   270 NLMEQDYDIGSTIREKIIPHAVSWFTGEAIE 300
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0006334 "nucleosome assembly" evidence=IEA;ISS
GO:0009294 "DNA mediated transformation" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0006281 "DNA repair" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2050424 NAP1;2 "AT2G19480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120785 NAP1;1 "AT4G26110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRE1 NAP1L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6H767 NAP1L1 "Nucleosome assembly protein 1-like 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F8W543 NAP1L1 "Nucleosome assembly protein 1-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0YIV4 NAP1L1 "Nucleosome assembly protein 1-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P55209 NAP1L1 "Nucleosome assembly protein 1-like 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGD7 NAP1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1855693 Nap1l1 "nucleosome assembly protein 1-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034186001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (375 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00020673001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)
   ••   0.465
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •    0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
pfam00956236 pfam00956, NAP, Nucleosome assembly protein (NAP) 1e-81
PTZ00007337 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr 4e-57
pfam04147 809 pfam04147, Nop14, Nop14-like family 2e-07
pfam04147 809 pfam04147, Nop14, Nop14-like family 1e-06
pfam05327 554 pfam05327, RRN3, RNA polymerase I specific transcr 1e-06
pfam02724 583 pfam02724, CDC45, CDC45-like protein 2e-06
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 5e-06
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 5e-06
pfam04147 809 pfam04147, Nop14, Nop14-like family 1e-05
pfam05327 554 pfam05327, RRN3, RNA polymerase I specific transcr 1e-05
pfam05327 554 pfam05327, RRN3, RNA polymerase I specific transcr 1e-05
pfam02724 583 pfam02724, CDC45, CDC45-like protein 2e-05
pfam02724 583 pfam02724, CDC45, CDC45-like protein 2e-05
PRK05658 619 PRK05658, PRK05658, RNA polymerase sigma factor Rp 2e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 4e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 5e-05
pfam02724 583 pfam02724, CDC45, CDC45-like protein 8e-05
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 9e-05
pfam05285 317 pfam05285, SDA1, SDA1 2e-04
PTZ00248319 PTZ00248, PTZ00248, eukaryotic translation initiat 2e-04
PLN00151 852 PLN00151, PLN00151, potassium transporter; Provisi 3e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 4e-04
pfam00183 529 pfam00183, HSP90, Hsp90 protein 4e-04
pfam04546211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 4e-04
pfam04546211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 4e-04
pfam06524314 pfam06524, NOA36, NOA36 protein 4e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 5e-04
pfam03344 715 pfam03344, Daxx, Daxx Family 5e-04
pfam05285 317 pfam05285, SDA1, SDA1 6e-04
pfam04546211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 6e-04
pfam05642 727 pfam05642, Sporozoite_P67, Sporozoite P67 surface 6e-04
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 7e-04
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 7e-04
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 8e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 9e-04
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 9e-04
pfam04147 809 pfam04147, Nop14, Nop14-like family 0.001
pfam02724 583 pfam02724, CDC45, CDC45-like protein 0.001
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 0.001
PTZ00482 844 PTZ00482, PTZ00482, membrane-attack complex/perfor 0.001
pfam02724 583 pfam02724, CDC45, CDC45-like protein 0.002
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 0.002
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 0.002
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 0.002
pfam11702 509 pfam11702, DUF3295, Protein of unknown function (D 0.002
pfam11705221 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym 0.002
COG5177 769 COG5177, COG5177, Uncharacterized conserved protei 0.002
PLN03196487 PLN03196, PLN03196, MOC1-like protein; Provisional 0.002
pfam04889241 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont 0.002
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 0.003
PLN00151 852 PLN00151, PLN00151, potassium transporter; Provisi 0.003
pfam03896 281 pfam03896, TRAP_alpha, Translocon-associated prote 0.003
COG5593821 COG5593, COG5593, Nucleic-acid-binding protein pos 0.003
PTZ00459 291 PTZ00459, PTZ00459, mucin-associated surface prote 0.003
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 0.004
pfam09184285 pfam09184, PPP4R2, PPP4R2 0.004
pfam08553 794 pfam08553, VID27, VID27 cytoplasmic protein 0.004
PRK02363129 PRK02363, PRK02363, DNA-directed RNA polymerase su 0.004
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP) Back     alignment and domain information 
 Score =  245 bits (627), Expect = 1e-81
 Identities = 111/209 (53%), Positives = 144/209 (68%), Gaps = 13/209 (6%)

Query: 1   MYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGA 60
           +Y KR EI+NG  E           E++  EEKG+P FWLTA+KN+ +LSE ITERDE A
Sbjct: 39  LYDKRREIINGAREPTE-------VEEEEPEEKGIPGFWLTALKNHPLLSEMITERDEEA 91

Query: 61  LKFLKDIKWFRIDDPK-GFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEW 119
           LK+L DI+   ++DPK GFKL F+F PNPYF N VLTKTYH+ DE +P   K+ GT IEW
Sbjct: 92  LKYLTDIRVEYLEDPKKGFKLIFHFAPNPYFTNEVLTKTYHLKDEGDPFELKSEGTPIEW 151

Query: 120 YPGKCLTQKLLKKK-PKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQ 178
             GK LT K +KKK   K +   + ITKT   ESFFNFF+PP+VP+DD+D DE+    L+
Sbjct: 152 KEGKNLTVKTVKKKQRNKKTGQTRTITKTVPAESFFNFFSPPKVPDDDDDDDEE----LE 207

Query: 179 NQMEQDYDIGSTIRDKIIPHAVSWFTGEA 207
            ++E DY+IG  I+D +IP A+ ++TGEA
Sbjct: 208 EELELDYEIGEIIKDDLIPRALDYYTGEA 236

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional Back     alignment and domain information
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295) Back     alignment and domain information
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 Back     alignment and domain information
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional Back     alignment and domain information
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha subunit Back     alignment and domain information
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|185638 PTZ00459, PTZ00459, mucin-associated surface protein (MASP); Provisional Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2 Back     alignment and domain information
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein Back     alignment and domain information
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
KOG1507358 consensus Nucleosome assembly protein NAP-1 [Chrom 100.0
PTZ00007337 (NAP-L) nucleosome assembly protein -L; Provisiona 100.0
PF00956244 NAP: Nucleosome assembly protein (NAP); InterPro: 100.0
PTZ00008185 (NAP-S) nucleosome assembly protein-S; Provisional 100.0
KOG1508260 consensus DNA replication factor/protein phosphata 99.87
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 89.27
PF03066149 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 88.29
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-67  Score=491.76  Aligned_cols=207  Identities=57%  Similarity=0.981  Sum_probs=181.7

Q ss_pred             ChhhhhhhhcccccCCccccccchh------------hhhccccCCCCchHHHHHhcChhhhhhhchhhHHhhccccceE
Q 023311            1 MYTKRYEIVNGVVEGAPNEVAMDQE------------EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIK   68 (284)
Q Consensus         1 ly~kR~~Iv~G~~e~~~~e~~~~~~------------~~~~~~~k~IP~FWl~vl~Nh~~ls~~I~e~De~iLkyL~DI~   68 (284)
                      ||+||++||+|.++|++++.++.+.            ....+.++|||+||||||+|+++|+.||+++|++||+||+||+
T Consensus       114 lfdkR~eIi~g~~EP~eee~e~~~~~~de~~~~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~  193 (358)
T KOG1507|consen  114 LFDKRREIINGEVEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIR  193 (358)
T ss_pred             HHHHHHHHHhCCccCcccccccccccccccccccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhh
Confidence            7999999999999998777654211            1222467999999999999999999999999999999999999


Q ss_pred             EEEeCCC-CceEEEEEeCCCCCccCceEEEEEEec---CCCCc------ceecceeeeeeecCCCCcchhhhhccCC-CC
Q 023311           69 WFRIDDP-KGFKLEFYFDPNPYFKNSVLTKTYHMI---DEDEP------ILEKAIGTEIEWYPGKCLTQKLLKKKPK-KG  137 (284)
Q Consensus        69 ve~~ed~-~gfkL~F~F~~NpYF~N~vLtK~y~~~---~~~~p------~~~~~~gt~I~Wk~GknlT~k~~kKk~k-k~  137 (284)
                      +.+..++ .||+|+|||.+||||+|+||||+|+|+   +..+|      .+.+|+||.|+|++|||||+++++|||| |+
T Consensus       194 ~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~  273 (358)
T KOG1507|consen  194 LKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTYFLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKG  273 (358)
T ss_pred             eeeccCCccceEEEEEcCCCccccccceeeeeeeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccC
Confidence            9999887 599999999999999999999999998   55555      6889999999999999999998888765 78


Q ss_pred             CCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhhcccchhhhccccccchhhhhcccccccc
Q 023311          138 SKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE  211 (284)
Q Consensus       138 ~k~~r~i~k~~~~~SFFnfF~~~~~p~~~~~~dee~~eel~~~l~~D~eIg~~I~d~IiP~Av~yftgea~~~d  211 (284)
                      ++++|+|++++++.||||||+||.+| +.++.|++.+   +.+|+.||+||++||+.|||+||.||||+|++++
T Consensus       274 ~~~~r~vtk~vp~eSFFNFFsPP~ip-d~~d~Ded~~---~~~L~~DyeIG~~lr~~IIPrAV~~fTGea~e~~  343 (358)
T KOG1507|consen  274 TGQVRTVTKTVPNESFFNFFSPPEIP-DEEDLDEDDL---EELLELDYEIGETLRDKIIPRAVLWFTGEALEDE  343 (358)
T ss_pred             CCceeeeeecccchhhhhccCCCCCC-cccccCchHH---HHHHHhhHHHHHHHHhhhhhheeeeecccccccc
Confidence            88999999999999999999999999 4444444332   7899999999999999999999999999995553

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus Back     alignment and domain information
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional Back     alignment and domain information
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair] Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
3hfd_A276 Nucleosome Assembly Protein 1 From Plasmodium Knowl 2e-25
3fs3_A359 Crystal Structure Of Malaria Parasite Nucleosome As 7e-25
3gyv_A249 Crystal Structure Of Nucleosome Assembly Protein Fr 1e-24
2z2r_A292 Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng 2e-23
2ayu_A417 The Structure Of Nucleosome Assembly Protein Sugges 6e-23
2e50_A225 Crystal Structure Of SetTAF-1betaINHAT Length = 225 3e-13
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 96/186 (51%), Gaps = 10/186 (5%)
Query: 34  GVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK----GFKLEFYFDPNPY 89
            +P+FWL A++NN+ +S  I + DE  L +L DI+   I   K    GF L F+F PNP+
Sbjct: 76  NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFHFAPNPF 135
Query: 90  FKNSVLTKTYHM--IDED-EPILEKAIGTEIEWYPGXXXXXXXXXXXXXXXXXX-XXPIT 145
           F NSVLTKTYHM  +D D EP+L     T I+WY                        + 
Sbjct: 136 FSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQ 195
Query: 146 KTEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQM--EQDYDIGSTIRDKIIPHAVSWF 203
           +T   +SFF+FF   +VP              Q +M  E DY++  TI+++IIP+AV +F
Sbjct: 196 QTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERIIPYAVDYF 255
Query: 204 TGEAIQ 209
            G  I+
Sbjct: 256 LGIIIE 261
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359 Back     alignment and structure
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249 Back     alignment and structure
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292 Back     alignment and structure
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417 Back     alignment and structure
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 3e-46
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 4e-39
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 4e-39
2e50_A225 Protein SET; histone chaperone, inhat, PP2AI, prot 6e-39
3kyp_A193 Pfnaps, nucleosome assembly protein; histone recog 1e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417 Back     alignment and structure
 Score =  159 bits (402), Expect = 3e-46
 Identities = 94/275 (34%), Positives = 150/275 (54%), Gaps = 35/275 (12%)

Query: 18  NEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK- 76
           +E    Q + +  + KG+P FWLTA++N  ++ + IT+RD   L++L+DI    + D + 
Sbjct: 168 DEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRP 227

Query: 77  GFKLEFYFD--PNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYPGKCLT--QK 128
           GFKL F FD   NP+F N +L KTY    E     + I + A G EI W           
Sbjct: 228 GFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDL 287

Query: 129 LLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIG 188
            ++K+  K +K  + I K    ESFFNFF+PP++  +D+D + +  E+L+ ++  DY IG
Sbjct: 288 EMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELE--EDLEERLALDYSIG 345

Query: 189 STIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEED 248
             ++DK+IP AV WFTG A++ E  E +++ D+D+ +E++DD G +D+D +  +E+D   
Sbjct: 346 EQLKDKLIPRAVDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQD--- 402

Query: 249 DEGKTKKKSSAGSKKSGRQQAGDAQQGERPPECKQ 283
                                  A + E+ PECKQ
Sbjct: 403 ---------------------DFAGRPEQAPECKQ 416
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264 Back     alignment and structure
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359 Back     alignment and structure
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225 Back     alignment and structure
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 100.0
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 100.0
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 100.0
2e50_A225 Protein SET; histone chaperone, inhat, PP2AI, prot 100.0
3kyp_A193 Pfnaps, nucleosome assembly protein; histone recog 100.0
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 82.32
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Back     alignment and structure
Probab=100.00  E-value=1.4e-70  Score=532.08  Aligned_cols=210  Identities=40%  Similarity=0.754  Sum_probs=174.0

Q ss_pred             ChhhhhhhhcccccCCccccccchh--------------------hhhccccCCCCchHHHHHhcChhhhhhhchhhHHh
Q 023311            1 MYTKRYEIVNGVVEGAPNEVAMDQE--------------------EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGA   60 (284)
Q Consensus         1 ly~kR~~Iv~G~~e~~~~e~~~~~~--------------------~~~~~~~k~IP~FWl~vl~Nh~~ls~~I~e~De~i   60 (284)
                      ||+||++||+|.++|+.+|..+...                    ......++|||+||++||+||++|+.||+++|++|
T Consensus       131 Ly~KR~eII~G~~ept~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~i  210 (417)
T 2ayu_A          131 IWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEV  210 (417)
T ss_dssp             HHHHHHHHHHTSSCCCHHHHHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTG
T ss_pred             HHHHHHHHHcCCCCCchhhhcccccccchhhhhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHH
Confidence            6999999999999999665432110                    11223469999999999999999999999999999


Q ss_pred             hccccceEEEEeCC-CCceEEEEEe--CCCCCccCceEEEEEEecCC----CCcceecceeeeeeecC-CCCcchhhhhc
Q 023311           61 LKFLKDIKWFRIDD-PKGFKLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKK  132 (284)
Q Consensus        61 LkyL~DI~ve~~ed-~~gfkL~F~F--~~NpYF~N~vLtK~y~~~~~----~~p~~~~~~gt~I~Wk~-GknlT~k~~kK  132 (284)
                      |+||+||+|+++.+ +.||+|+|||  .+||||+|++|||+|+|...    |.+++.+++||+|+||+ |||||+++++|
T Consensus       211 Lk~L~DI~Ve~~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kk  290 (417)
T 2ayu_A          211 LEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMR  290 (417)
T ss_dssp             GGGEEEEECCBCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEEC
T ss_pred             HhhccceEEEEccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhh
Confidence            99999999999875 5699999999  99999999999999999854    33455679999999999 99999999988


Q ss_pred             cCC-CCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhhcccchhhhccccccchhhhhcccccccc
Q 023311          133 KPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE  211 (284)
Q Consensus       133 k~k-k~~k~~r~i~k~~~~~SFFnfF~~~~~p~~~~~~dee~~eel~~~l~~D~eIg~~I~d~IiP~Av~yftgea~~~d  211 (284)
                      |+| |+++++|+|++++++.||||||+++.+|.+++  +++..++++++|+.||+||++|+++|||+||.||||+|++.+
T Consensus       291 Kqr~K~~~~~R~v~k~v~~~SFFnfFspp~~p~~de--de~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~~~e  368 (417)
T 2ayu_A          291 KQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFE  368 (417)
T ss_dssp             CC---------CCEEEEECCCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHH
T ss_pred             cccccCCCcccccccCCCCCCceeecCCCCCCCccc--cccchHHHHHHHHHHHHHHHHHHhhccccHHHHhcccccccc
Confidence            876 67788899999999999999999999988653  222345688999999999999999999999999999999886


Q ss_pred             c
Q 023311          212 E  212 (284)
Q Consensus       212 d  212 (284)
                      +
T Consensus       369 ~  369 (417)
T 2ayu_A          369 F  369 (417)
T ss_dssp             H
T ss_pred             c
Confidence            5
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Back     alignment and structure
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Back     alignment and structure
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Back     alignment and structure
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Back     alignment and structure
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d2ayua1301 d.305.1.1 (A:70-370) Nucleosome assembly protein, 1e-54
d2e50a1222 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie 3e-40
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  177 bits (449), Expect = 1e-54
 Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 31/240 (12%)

Query: 1   MYTKRYEIVNGVVEGAPNEVA--------------------MDQEEDKATEEKGVPDFWL 40
           ++ +R  I++G  +  P ++A                      Q + +  + KG+P FWL
Sbjct: 62  IWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWL 121

Query: 41  TAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKG---FKLEFYFDPNPYFKNSVLTK 97
           TA++N  ++ + IT+RD   L++L+DI    + D +        F    NP+F N +L K
Sbjct: 122 TALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCK 181

Query: 98  TYHMIDE----DEPILEKAIGTEIEWYPGK--CLTQKLLKKKPKKGSKNAKPITKTEECE 151
           TY    E     + I + A G EI W            ++K+  K +K  + I K    E
Sbjct: 182 TYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIE 241

Query: 152 SFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE 211
           SFFNFF+PP++  +D+D  E+  E+L+ ++  DY IG  ++DK+IP AV WFTG A++ E
Sbjct: 242 SFFNFFDPPKIQNEDQD--EELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFE 299
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d2ayua1301 Nucleosome assembly protein, NAP {Baker's yeast (S 100.0
d2e50a1222 Protein SET {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-58  Score=427.18  Aligned_cols=209  Identities=39%  Similarity=0.764  Sum_probs=171.1

Q ss_pred             ChhhhhhhhcccccCCccccccc--------------------hhhhhccccCCCCchHHHHHhcChhhhhhhchhhHHh
Q 023311            1 MYTKRYEIVNGVVEGAPNEVAMD--------------------QEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGA   60 (284)
Q Consensus         1 ly~kR~~Iv~G~~e~~~~e~~~~--------------------~~~~~~~~~k~IP~FWl~vl~Nh~~ls~~I~e~De~i   60 (284)
                      ||++|++||+|.++|+.+|..+.                    +.......++|||+||++||+||+.|+.||+++|++|
T Consensus        62 ly~kR~~II~G~~ept~eE~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~  141 (301)
T d2ayua1          62 IWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEV  141 (301)
T ss_dssp             HHHHHHHHHHTSSCCCHHHHHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTG
T ss_pred             HHHHHHHHHCCCCCCCHHHhhcccccccccchhhhhhhhhhhhccccccccccCCchHHHHHHHcCHHHhhhCCHHHHHH
Confidence            69999999999999996654211                    0123345678999999999999999999999999999


Q ss_pred             hccccceEEEEeCCCC-ceEEEEEe--CCCCCccCceEEEEEEecCC----CCcceecceeeeeeecC-CCCcchhhhhc
Q 023311           61 LKFLKDIKWFRIDDPK-GFKLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKK  132 (284)
Q Consensus        61 LkyL~DI~ve~~ed~~-gfkL~F~F--~~NpYF~N~vLtK~y~~~~~----~~p~~~~~~gt~I~Wk~-GknlT~k~~kK  132 (284)
                      |+||+||+|++..++. ||+|+|+|  .+||||+|++|||+|+|...    +.+++.+++||+|+||+ |+|+|+++++|
T Consensus       142 L~~L~dI~ve~~~d~~~gf~l~F~F~f~~N~yF~N~vLtK~y~~~~~~~~~~~~~~~~~eg~~I~WK~~~k~~t~~~~~k  221 (301)
T d2ayua1         142 LEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMR  221 (301)
T ss_dssp             GGGEEEEECCBCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEEC
T ss_pred             HHhhceeEEEEccCCCCCceEEEEEecCCCCCCCCCeEEEEEEEecCCCCCCCccccccCccccccccCCCcchhhhhhh
Confidence            9999999999887765 99999999  68999999999999999754    23445689999999999 58999998877


Q ss_pred             cCC-CCCCCCcccccccccccccccccccCCCCCCCCCChhHHHHHHHhhhhcccchhhhccccccchhhhhcccccccc
Q 023311          133 KPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQEE  211 (284)
Q Consensus       133 k~k-k~~k~~r~i~k~~~~~SFFnfF~~~~~p~~~~~~dee~~eel~~~l~~D~eIg~~I~d~IiP~Av~yftgea~~~d  211 (284)
                      |++ ++++..|++++++++.||||||+++.+|.++.  +++..++++++|..||+||.+|+++|||+||.||||+|++.+
T Consensus       222 k~~~k~~~~~r~~~k~~~~~SFF~fF~~~~~~~~~~--~~~~~e~~~~~l~~D~eig~~i~d~iiP~Av~yytGea~~~~  299 (301)
T d2ayua1         222 KQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFE  299 (301)
T ss_dssp             CC---------CCEEEEECCCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHHHHH
T ss_pred             cccCCCCCCCcccccCCCCCCCCcCCCCCCCCCccc--cchhhHHHHHHHhhhHHHHHHHHhcccccHHHhhCchhhhcc
Confidence            765 56777899999999999999999999887553  334456788999999999999999999999999999999874
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure