Citrus Sinensis ID: 023342

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHHHcccEEcccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHcccccccEEEEEEEEccccccEEEEEEEcHHHHHHHHHHccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccccccccccccccEEEEcccccccccHEEcccccccccccccccccEEEEEEEcccHcccHHHHHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHccEEEEccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHEEHccccccEEEEEEEEcccccccEEEEEccHHHHHHHHHHcccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
maakllssssspptpqllcsfslhsklkfkdstQQQSwlrqapnppsspttraKKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKtfvgegeskkapnqvAGEIFSFftrnnfvvtdrgevitfegmmvpsrgqaAFLTFCTCISLASVALVLTitypdignnwFWITILSPLAGAYYWKRASRKEQIKVKMmvgedgdlseilVQGDDQQVEQMRKELQLNEKGMVYVKGIFER
Flexible Loop (DISEMBL)
maakllssssspptpqLLCSFSLHSKLKFKDSTQQqswlrqapnppssptTRAKKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTfvgegeskkapnqVAGEIfsfftrnnfvvTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMRkelqlnekgmvyvkgifer
Low Complexity Region (SEG)
MAAKllssssspptpqllcsFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRakkkqlavavavqEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER
Disordered region (IsUnstruct)
*********************************************************LAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGE********QVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGE******IL*********************MVYVKGI***
Disordered Region (DISOPRED)
*************TPQLLCSFSLHSKLK***********************************VQE***ASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFV************AGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIK************EILVQGDDQQVEQMRKELQLNEKGMVYVKGIFE*
Disordered Region (DISEMBL)
**************PQLLCSFSLHSKLKFK*****************************VAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER
Disordered Region (DISPRO)
*********SSPPTPQLLCSFSLHSKLKFKDSTQQQSWLRQ****PSSPTT**KKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
225451623	267	PREDICTED: uncharacterized protein LOC10	0.865	0.917	0.736	1e-105
255543529	266	conserved hypothetical protein [Ricinus	0.922	0.981	0.711	1e-104
358249262	268	uncharacterized protein LOC100807450 [Gl	0.915	0.966	0.702	1e-101
356498603	268	PREDICTED: uncharacterized protein LOC10	0.780	0.824	0.788	3e-99
224056809	204	predicted protein [Populus trichocarpa]	0.706	0.980	0.86	7e-99
147802224	190	hypothetical protein VITISV_029913 [Viti	0.671	1.0	0.869	1e-94
449452032	255	PREDICTED: uncharacterized protein LOC10	0.897	0.996	0.651	2e-93
357508449	259	hypothetical protein MTR_7g084160 [Medic	0.692	0.756	0.828	6e-92
297814902	267	hypothetical protein ARALYDRAFT_484443 [	0.932	0.988	0.637	5e-91
18405058	267	cofactor assembly of complex C [Arabidop	0.932	0.988	0.633	8e-91

>gi|225451623|ref|XP_002276522.1| PREDICTED: uncharacterized protein LOC100256625 [Vitis vinifera] gi|296082263|emb|CBI21268.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/258 (73%), Positives = 217/258 (84%), Gaps = 13/258 (5%)

Query: 28  KFKDST---QQQSWLRQAPNPPSSPTTRAKKKQLAVAVAVQEPLLASTSALIEHINNLDQ 84
           KF+ S    Q Q WLR+ P P        + K+L V V++ +P+ +S++AL+ H++   Q
Sbjct: 20  KFRTSDFTLQHQPWLRRTPTP-------TRPKRLVVQVSLHDPI-SSSTALLHHLHT-HQ 70

Query: 85  NRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKA 144
              SL+ LAEST GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV+KTF+GEGE K  
Sbjct: 71  TPYSLFELAEST-GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIGEGEGKNK 129

Query: 145 PNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTIT 204
           PN +AGEI SFF+RNNFVV+DRGE ITFEGMMVPSRGQAA LTFCTCISLASV LVLTIT
Sbjct: 130 PNHMAGEILSFFSRNNFVVSDRGETITFEGMMVPSRGQAALLTFCTCISLASVGLVLTIT 189

Query: 205 YPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMR 264
           +PD+GNNWFW+TILSPLAGAYYWKRASRKEQIKVKM+V +DG LSEI+VQGDDQQVEQMR
Sbjct: 190 FPDVGNNWFWLTILSPLAGAYYWKRASRKEQIKVKMIVADDGTLSEIIVQGDDQQVEQMR 249

Query: 265 KELQLNEKGMVYVKGIFE 282
           KELQL+EKGMVYVKGIFE
Sbjct: 250 KELQLSEKGMVYVKGIFE 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543529|ref|XP_002512827.1| conserved hypothetical protein [Ricinus communis] gi|223547838|gb|EEF49330.1| conserved hypothetical protein [Ricinus communis]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/281 (71%), Positives = 223/281 (79%), Gaps = 20/281 (7%)

Query: 3   AKLLSSSSSPPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLAVAV 62
           AKLL S    P P    S SL SKL  K   +   W    P P  + T     +Q+   V
Sbjct: 6   AKLLLS----PNP---LSISLPSKLSCK---KHHLW----PGPGQARTPTTPNRQVVRVV 51

Query: 63  AVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLI 122
           ++QE +L+S++ L+E +++      S++ +AES  GYS ASYYTSLGLFVISVPGLWSLI
Sbjct: 52  SLQEHVLSSSAILVEQLHH-----DSMFSVAESM-GYSSASYYTSLGLFVISVPGLWSLI 105

Query: 123 KRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQ 182
           KRSVKSKIVQKTF+GEGE +KAPN VAGEI SFFTRNNFVVTDRGE ITFEGMM+PSRGQ
Sbjct: 106 KRSVKSKIVQKTFIGEGEGRKAPNHVAGEILSFFTRNNFVVTDRGETITFEGMMIPSRGQ 165

Query: 183 AAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMV 242
           AA LTFCTCISLASVALVLTIT PD GNNWFWITILSPLAGAYYWKRASRKEQIKVKMMV
Sbjct: 166 AALLTFCTCISLASVALVLTITLPDFGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMV 225

Query: 243 GEDGDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER 283
            +DG LSEI+VQGDDQQVEQMRKELQL+EKGMVYVKGIFER
Sbjct: 226 SDDGTLSEIVVQGDDQQVEQMRKELQLSEKGMVYVKGIFER 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249262|ref|NP_001239764.1| uncharacterized protein LOC100807450 [Glycine max] gi|255637962|gb|ACU19297.1| unknown [Glycine max]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/272 (70%), Positives = 211/272 (77%), Gaps = 13/272 (4%)

Query: 12  PPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLAVAVAVQEPLLAS 71
           PP P   CS  + +KL  +       +     +P     TR  KK +A      +PL++ 
Sbjct: 10  PPHPHPFCSLPIPTKLGIRPF-----FTFHQVHPLVVQHTRKPKKHVAHVSLHDDPLVSC 64

Query: 72  TSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV 131
                  I+   QN   L LLAES AGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV
Sbjct: 65  I------IHQQQQNPYHLVLLAES-AGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV 117

Query: 132 QKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTC 191
           QKTF+GEGE KKAPNQVAGEI SFFTRNNF VTDRGE ITFEGMMVPSRGQAA LTFCTC
Sbjct: 118 QKTFIGEGE-KKAPNQVAGEILSFFTRNNFAVTDRGETITFEGMMVPSRGQAALLTFCTC 176

Query: 192 ISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEI 251
           ISLASVALVLTIT PD+GNNWFWIT+LSPLAG YYW RASRKEQIKVKM+VG +G+LSEI
Sbjct: 177 ISLASVALVLTITVPDVGNNWFWITLLSPLAGLYYWTRASRKEQIKVKMIVGNEGNLSEI 236

Query: 252 LVQGDDQQVEQMRKELQLNEKGMVYVKGIFER 283
           +VQGDDQQVEQMRKEL+ +EKGMVYVKG+FER
Sbjct: 237 IVQGDDQQVEQMRKELKFSEKGMVYVKGVFER 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498603|ref|XP_003518139.1| PREDICTED: uncharacterized protein LOC100803392 [Glycine max]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/232 (78%), Positives = 197/232 (84%), Gaps = 11/232 (4%)

Query: 52  RAKKKQLAVAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLF 111
           R  KK +A      +PL++ T         + QN   L LLAES AGYSLASYYTSLGLF
Sbjct: 48  RKSKKHVAHVSLHDDPLVSYT---------IQQNPYHLVLLAES-AGYSLASYYTSLGLF 97

Query: 112 VISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVIT 171
           VISVPGLWSLIKRSVKSKIVQKTF+GEGE KKAPNQ AGEI SFFTRNNF VTDRGE IT
Sbjct: 98  VISVPGLWSLIKRSVKSKIVQKTFIGEGE-KKAPNQAAGEILSFFTRNNFTVTDRGETIT 156

Query: 172 FEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRAS 231
           FEGMMVPSRGQAA LTFCTCISLASVALVLTIT+PD+GNNWFWITI SPLAG YYW RAS
Sbjct: 157 FEGMMVPSRGQAALLTFCTCISLASVALVLTITFPDVGNNWFWITISSPLAGLYYWTRAS 216

Query: 232 RKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER 283
           RKEQIKVKM+VG DG+LSEI+VQGDDQQVEQMRKEL+L+EKGMVYVKG+FER
Sbjct: 217 RKEQIKVKMIVGNDGNLSEIIVQGDDQQVEQMRKELKLSEKGMVYVKGVFER 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056809|ref|XP_002299034.1| predicted protein [Populus trichocarpa] gi|222846292|gb|EEE83839.1| predicted protein [Populus trichocarpa]

 Score =  366 bits (939), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 172/200 (86%), Positives = 185/200 (92%)

Query: 84  QNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKK 143
           QN++S++++AES A YSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTF GEGE KK
Sbjct: 5   QNQESMFVVAESAASYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFTGEGEGKK 64

Query: 144 APNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTI 203
            P QVAGEI SFFTRNNF VT RGE ITFEGMMVP+RGQAA LTFCTCISLASVALVLTI
Sbjct: 65  EPAQVAGEILSFFTRNNFAVTGRGETITFEGMMVPNRGQAALLTFCTCISLASVALVLTI 124

Query: 204 TYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQM 263
           T+PD GNNWFWITILSPLAGAYYWKRASRKE+IKVKMMV +DG LSEI+VQGDDQQVEQM
Sbjct: 125 TFPDFGNNWFWITILSPLAGAYYWKRASRKEEIKVKMMVADDGTLSEIVVQGDDQQVEQM 184

Query: 264 RKELQLNEKGMVYVKGIFER 283
           RK+LQ +EKGMVYVKGIFER
Sbjct: 185 RKDLQFSEKGMVYVKGIFER 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802224|emb|CAN68272.1| hypothetical protein VITISV_029913 [Vitis vinifera]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 166/191 (86%), Positives = 179/191 (93%), Gaps = 1/191 (0%)

Query: 92  LAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGE 151
           + EST GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV+KTF+GEGE K  PN +AGE
Sbjct: 1   MKEST-GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIGEGEGKNKPNHMAGE 59

Query: 152 IFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNN 211
           I SFF+RNNFVV+DRGE ITFEGMMVPSRGQAA LTFCTCISLASV LVLTIT+PD+GNN
Sbjct: 60  ILSFFSRNNFVVSDRGETITFEGMMVPSRGQAALLTFCTCISLASVGLVLTITFPDVGNN 119

Query: 212 WFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMRKELQLNE 271
           WFW+TILSPLAGAYYWKRASRKEQIKVKM+V +DG LSEI+VQGDDQQVEQMRKELQL+E
Sbjct: 120 WFWLTILSPLAGAYYWKRASRKEQIKVKMIVADDGTLSEIIVQGDDQQVEQMRKELQLSE 179

Query: 272 KGMVYVKGIFE 282
           KGMVYVKGIFE
Sbjct: 180 KGMVYVKGIFE 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452032|ref|XP_004143764.1| PREDICTED: uncharacterized protein LOC101223187 [Cucumis sativus] gi|449516926|ref|XP_004165497.1| PREDICTED: uncharacterized protein LOC101227453 [Cucumis sativus]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 185/284 (65%), Positives = 207/284 (72%), Gaps = 30/284 (10%)

Query: 1   MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKDSTQQQSWLRQAPNPP-SSPTTRAKKKQLA 59
           MAAKLL SS   P P    SFS                +  +P P  + P T  K  +  
Sbjct: 1   MAAKLLPSSHLYPLPS--NSFSA---------------IDLSPRPCFARPRTHFKPHRSV 43

Query: 60  VAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLW 119
                 EPL+A           L  +  S +LLAES  GYS+ASYYTSLGLFVISVPGLW
Sbjct: 44  TVRVSAEPLVA-----------LQDHNNSAFLLAESV-GYSMASYYTSLGLFVISVPGLW 91

Query: 120 SLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPS 179
           SLIKRSVKSK+V+KTFV E  SKK PNQ+AGEI SFFTRNNF VTDRGE ITFEG MVPS
Sbjct: 92  SLIKRSVKSKVVKKTFVSEDGSKKEPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPS 151

Query: 180 RGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVK 239
           RGQAA LTFCTCISLASV LVLTITYPD GNNWFW++ LSPLAGAYYW +ASRKE+IKVK
Sbjct: 152 RGQAALLTFCTCISLASVGLVLTITYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVK 211

Query: 240 MMVGEDGDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER 283
           M+VGEDG L EI+VQGDDQQ++QMRKEL+L+EKGMVYVKGIFE+
Sbjct: 212 MIVGEDGRLGEIVVQGDDQQIDQMRKELKLSEKGMVYVKGIFEQ 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508449|ref|XP_003624513.1| hypothetical protein MTR_7g084160 [Medicago truncatula] gi|355499528|gb|AES80731.1| hypothetical protein MTR_7g084160 [Medicago truncatula]

 Score =  343 bits (879), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 164/198 (82%), Positives = 180/198 (90%), Gaps = 2/198 (1%)

Query: 85  NRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKA 144
           N  SL+LL E+T GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIV+KTF+ EG   KA
Sbjct: 63  NPNSLFLLTETT-GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIDEG-GNKA 120

Query: 145 PNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTIT 204
           P+QVAGE+ SFFTRNNF V DRGE ITFEG+MVPSRGQAA LTFCTCISLASV+LVLTIT
Sbjct: 121 PSQVAGEVLSFFTRNNFAVVDRGETITFEGVMVPSRGQAALLTFCTCISLASVSLVLTIT 180

Query: 205 YPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMR 264
            PDIGNNWFW+TILSPLAGAYYW RASRKEQ++VKM+V EDG LSEI+VQGDDQQVEQMR
Sbjct: 181 VPDIGNNWFWLTILSPLAGAYYWTRASRKEQVQVKMIVKEDGTLSEIVVQGDDQQVEQMR 240

Query: 265 KELQLNEKGMVYVKGIFE 282
           KEL+ +EKGMVYVKG+FE
Sbjct: 241 KELKFSEKGMVYVKGLFE 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814902|ref|XP_002875334.1| hypothetical protein ARALYDRAFT_484443 [Arabidopsis lyrata subsp. lyrata] gi|297321172|gb|EFH51593.1| hypothetical protein ARALYDRAFT_484443 [Arabidopsis lyrata subsp. lyrata]

 Score =  340 bits (871), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 181/284 (63%), Positives = 205/284 (72%), Gaps = 20/284 (7%)

Query: 1   MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKD-STQQQSWLRQAPNPPSSPTTRAKKKQLA 59
           MA KL+S       P L C +    ++  K    +++ W+    N  S           A
Sbjct: 1   MATKLIS-------PPLSCPWVTSREVSIKGLPRRRREWMVTKRNRVS-----------A 42

Query: 60  VAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLW 119
           V     EPL   +S+ I+     +QN  SL L+ E+T GYSLASYYTSLGLFVISVPGLW
Sbjct: 43  VTAMFVEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLW 102

Query: 120 SLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPS 179
           SLIKRSVKSKIV+KTFV   E KK P QVAGEI SFFTR NF +TDRGE ITFEG MVPS
Sbjct: 103 SLIKRSVKSKIVRKTFV-VNEVKKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPS 161

Query: 180 RGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVK 239
           RGQAA LTFCTCISLASV LVLTIT PD GNNWF+I +LSPLAG YYWK+ASRKE+IKVK
Sbjct: 162 RGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVK 221

Query: 240 MMVGEDGDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER 283
           MMVGE G L EI+VQGDD QVE+MRKELQL+EKGMVYVKG+FER
Sbjct: 222 MMVGEKGKLDEIVVQGDDVQVEEMRKELQLSEKGMVYVKGLFER 265

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405058|ref|NP_566797.1| cofactor assembly of complex C [Arabidopsis thaliana] gi|11994304|dbj|BAB01734.1| unnamed protein product [Arabidopsis thaliana] gi|21592738|gb|AAM64687.1| unknown [Arabidopsis thaliana] gi|22655152|gb|AAM98166.1| expressed protein [Arabidopsis thaliana] gi|30023738|gb|AAP13402.1| At3g26710 [Arabidopsis thaliana] gi|110742756|dbj|BAE99286.1| hypothetical protein [Arabidopsis thaliana] gi|332643681|gb|AEE77202.1| cofactor assembly of complex C [Arabidopsis thaliana]

 Score =  339 bits (869), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 180/284 (63%), Positives = 205/284 (72%), Gaps = 20/284 (7%)

Query: 1   MAAKLLSSSSSPPTPQLLCSFSLHSKLKFKD-STQQQSWLRQAPNPPSSPTTRAKKKQLA 59
           MA KL+S       P L C +    ++  K    +++ W+    N  S           A
Sbjct: 1   MATKLIS-------PPLSCPWVTSREVIIKGLPRRRREWMVTKRNRVS-----------A 42

Query: 60  VAVAVQEPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLW 119
           V   + EPL   +S+ I+     +QN  SL L+ E+T GYSLASYYTSLGLFVISVPGLW
Sbjct: 43  VTAMIVEPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLW 102

Query: 120 SLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPS 179
           SLIKRSVKSKIV+KTFV   + KK P QVAGEI SFFTR NF +TDRGE ITFEG MVPS
Sbjct: 103 SLIKRSVKSKIVRKTFV-VNDVKKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPS 161

Query: 180 RGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVK 239
           RGQAA LTFCTCISLASV LVLTIT PD GNNWF+I +LSPLAG YYWK+ASRKE+IKVK
Sbjct: 162 RGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVK 221

Query: 240 MMVGEDGDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER 283
           MMVG  G L EI+VQGDD QVE+MRKELQLNEKGMVYVKG+FER
Sbjct: 222 MMVGSKGRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVKGLFER 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2090807	267	CCB1 "AT3G26710" [Arabidopsis	0.766	0.812	0.761	1e-82

TAIR|locus:2090807 CCB1 "AT3G26710" [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 166/218 (76%), Positives = 182/218 (83%)

Query:    66 EPLLASTSALIEHINNLDQNRQSLYLLAESTAGYSLASYYTSLGLFVISVPGLWSLIKRS 125
             EPL   +S+ I+     +QN  SL L+ E+T GYSLASYYTSLGLFVISVPGLWSLIKRS
Sbjct:    49 EPLSVVSSSAIQIHQWWEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRS 108

Query:   126 VKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTDRGEVITFEGMMVPSRGQAAF 185
             VKSKIV+KTFV   + KK P QVAGEI SFFTR NF +TDRGE ITFEG MVPSRGQAA 
Sbjct:   109 VKSKIVRKTFV-VNDVKKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAAL 167

Query:   186 LTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGED 245
             LTFCTCISLASV LVLTIT PD GNNWF+I +LSPLAG YYWK+ASRKE+IKVKMMVG  
Sbjct:   168 LTFCTCISLASVGLVLTITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSK 227

Query:   246 GDLSEILVQGDDQQVEQMRKELQLNEKGMVYVKGIFER 283
             G L EI+VQGDD QVE+MRKELQLNEKGMVYVKG+FER
Sbjct:   228 GRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVKGLFER 265


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       254   0.00084  114 3  11 22  0.45    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.89u 0.11s 22.00t   Elapsed:  00:00:01
  Total cpu time:  21.89u 0.11s 22.00t   Elapsed:  00:00:01
  Start:  Mon May 20 21:58:47 2013   End:  Mon May 20 21:58:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010190 "cytochrome b6f complex assembly" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
pfam12046	173	pfam12046, DUF3529, Protein of unknown function (D	9e-84

>gnl|CDD|152481 pfam12046, DUF3529, Protein of unknown function (DUF3529)

 Score =  248 bits (636), Expect = 9e-84
 Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 7/177 (3%)

Query: 100 SLASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRN 159
             AS Y++L L ++   GL+  ++ SVK +  + TF+    S + P +V G +  +F R 
Sbjct: 1   MQASLYSTLLLTLLLAIGLFFFLRASVKDRTTRVTFI----SPRPPLEVLGGLKEYFERR 56

Query: 160 NFVVTD---RGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWIT 216
            + V      GEVITFEG++ PSR  A FLT    + LA + LVL+   P +G     + 
Sbjct: 57  GYRVAGGDAEGEVITFEGIVAPSRFLAVFLTLLAAVGLACLGLVLSQLVPQLGWWPLLLV 116

Query: 217 ILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDDQQVEQMRKELQLNEKG 273
           +LSPLAG YYW+RASR EQ+++K++  +D   S++ V+    ++ ++ KELQL   G
Sbjct: 117 LLSPLAGLYYWQRASRPEQVELKLVEADDDGGSDLRVRAHRDELIELAKELQLKSDG 173

This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length. Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PF12046	173	DUF3529: Protein of unknown function (DUF3529); In	100.0
PRK11198	147	LysM domain/BON superfamily protein; Provisional	92.75
PF05140	464	ResB: ResB-like family ; InterPro: IPR007816 This	81.82

>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised

Probab=100.00  E-value=2.1e-77  Score=520.16  Aligned_cols=169  Identities=40%  Similarity=0.673  Sum_probs=166.7

Q ss_pred             hhhhhHHHHHHHHHhhhhhhhhhhccccceeEEEEEeecCCCCChhHHHHHHHHHhhhcCceeec---CceEEEEEEeec
Q 023342          101 LASYYTSLGLFVISVPGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTD---RGEVITFEGMMV  177 (283)
Q Consensus       101 ~aSyySTL~LTlLlaiGL~FFIRAS~KDRi~qrT~vv~~~s~~p~~evl~~L~~yF~~R~Y~V~~---~~~vItFEG~V~  177 (283)
                      .++|||||+||+|++||||||||||+||||+++|+++++    |+++++++|++||++|||+|++   ++|+|||||+|+
T Consensus         2 ~~~~~STl~LtlLl~iGL~ffiraS~KdRt~~~~~~s~~----p~~~~~~~l~~yf~~r~y~v~~~d~~~~~itFeG~V~   77 (173)
T PF12046_consen    2 TASLYSTLLLTLLLAIGLFFFIRASVKDRTEQVTFESPQ----PPDEVLEQLKAYFEQRNYRVAEGDAEGEVITFEGFVA   77 (173)
T ss_pred             CchhhHHHHHHHHHHhHHHHHHHHhccccEEEEEEEcCC----CHHHHHHHHHHHHHhcCceecccCccccEEEEEEEec
Confidence            479999999999999999999999999999999999988    9999999999999999999999   799999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHhhhcchhhhhhcCCcceeEEEEEEECCCCCcceEEEEecH
Q 023342          178 PSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILSPLAGAYYWKRASRKEQIKVKMMVGEDGDLSEILVQGDD  257 (283)
Q Consensus       178 pS~~LAiFLTfLaaiGl~CLgLVLsil~P~lG~~~l~L~LLSPLAGifYWqkA~R~EqV~lKL~s~dd~~~S~ItV~aHR  257 (283)
                      ||+|||+|||||+++|++|+||||+|++|++|||||+|++|||+||+||||||+|+|+|+|||+++||+++|+|+|+|||
T Consensus        78 pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L~lLsPlAG~~Yw~kA~R~E~v~lkl~~~~~~~~s~i~v~ahr  157 (173)
T PF12046_consen   78 PSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLLVLLSPLAGIFYWQKAGRPEQVELKLESADDESGSDITVRAHR  157 (173)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHhhhhhhhhhhcCCCcceEEEEEEEcCCCCcceEEEEEcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcCc
Q 023342          258 QQVEQMRKELQLNEKG  273 (283)
Q Consensus       258 DELi~L~~eL~L~ekG  273 (283)
                      ||||+|+++|+|+|+|
T Consensus       158 DEL~~L~~~L~L~~~G  173 (173)
T PF12046_consen  158 DELIELQKELQLKSKG  173 (173)
T ss_pred             HHHHHHHHhcCCCCCC
Confidence            9999999999999998

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.

>PRK11198 LysM domain/BON superfamily protein; Provisional

Probab=92.75  E-value=0.16  Score=43.12  Aligned_cols=57  Identities=14%  Similarity=0.215  Sum_probs=43.1

Q ss_pred             hhhhhhhhhccccceeEEEEEeecCCCCChhHHHHHHHHHhhhcCceeec-----CceEEEEEEeecC
Q 023342          116 PGLWSLIKRSVKSKIVQKTFVGEGESKKAPNQVAGEIFSFFTRNNFVVTD-----RGEVITFEGMMVP  178 (283)
Q Consensus       116 iGL~FFIRAS~KDRi~qrT~vv~~~s~~p~~evl~~L~~yF~~R~Y~V~~-----~~~vItFEG~V~p  178 (283)
                      .|||+|||-+-|.      +.....-+...+++.+.|.+.+++.|+...+     .+.++|+.|.|..
T Consensus         1 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~i~V~v~~G~v~l~G~v~s   62 (147)
T PRK11198          1 MGLFSFVKEAGEK------LFDAVTAQADNEDAADALKEHISKQGLGDADVNVQVEDGKATVSGDAAS   62 (147)
T ss_pred             CcHHHHHHHHHHH------hcCCCCcccchHHHHHHHHHHHHhcCCCcCCceEEEeCCEEEEEEEeCC
Confidence            3999999999885      1111111234688889999999999998765     5899999999984

>PF05140 ResB: ResB-like family ; InterPro: IPR007816 This domain is found in a number of known and suspected cytochrome c biogenesis proteins, including ResB []

Probab=81.82  E-value=17  Score=35.67  Aligned_cols=25  Identities=8%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             CCChhHHHHHHHHHhhhcCceeecC
Q 023342          142 KKAPNQVAGEIFSFFTRNNFVVTDR  166 (283)
Q Consensus       142 ~~p~~evl~~L~~yF~~R~Y~V~~~  166 (283)
                      +.+++++++.+.+.|++++|+|...
T Consensus       106 ~~~~~~~~~~~~~~L~~~gyrv~~~  130 (464)
T PF05140_consen  106 PGDPEEALERLAALLKKKGYRVRRQ  130 (464)
T ss_pred             CCChHHHHHHHHHHHHhCCcEEEEe
Confidence            3599999999999999999999774

Mutations in ResB indicate that they are essential for growth []. ResB is predicted to be a transmembrane protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00