Citrus Sinensis ID: 023365

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMSLLVELER
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEccccHHHHHHHHHHHHcccccccccccccccccccccHHHcccccHcEEccccccccccHHHHHHHHHHcccccccccccccccEEcccccccEEccccccHHHHcccccHHHHHcccHccccccccccccccccccEEEcHHHHHHcccccccccHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHccccHHHHHHHHccccccccHHHHHHHHHHHccccEEEEHHHHHHHcc
Coil and Loop (DISEMBL)
mlgvlcarhkpwilnSISLLahgsfaahhqnrfvyspihvqsperrrhhstacrlgvgggglsvgggaasiwhailpsdgcsgcrrrrngrrkpgegswnaasderparwLHRADSAWLLFGVCsclapieywtdsndsnpetvtFYEEKiskidgggggddlnvkrceiinerpfkvtgvlaDGRCLFRAIAHGaclrsgeevpdeeRQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIqqpyvwggepelLMASHVLKDQINHPHMSLLVELER
Flexible Loop (DISEMBL)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAilpsdgcsgcRRRRNgrrkpgegswnaasderparWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKIskidgggggddLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGaclrsgeevpdEERQRELADELRAQVVDELLkrrketewfiegdfdtyVKEIQQPYVWGGEPELLMASHVLKDQINHPHMSLLVELER
Low Complexity Region (SEG)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRlgvgggglsvgggaasIWHAILPSDgcsgcrrrrngrrkpgegSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIdgggggddLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMSLLVELER
Disordered region (IsUnstruct)
**GVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQ*******HSTACRLGVGGGGLSVGGGAASIWHAILPSDGCS*************************ARWLHRADSAWLLFGVCSCLAPIEYWTD*******************************RCEIINERPFKVTGVLADGRCLFRAIAHGACLR*******************AQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQINH***********
Disordered Region (DISOPRED)
*LGVL*ARHKPWILNSISLLAHG**********************************************************************************************WLLFGVCS*********************************************INERPFKVTGVLADGRCLFRAIAHGACLRSGEE*******RELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMSLLVE*E*
Disordered Region (DISEMBL)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQ*********TACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRR********************PARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRS************LADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMSLLVELER
Disordered Region (DISPRO)
*LGVLCARHKPWILNSISLLAHGSFAAHH***FVYSPIHVQSPE*RRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDGCSGC***RNGRRKPGEGSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMSLLVELER
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMSLLVELER
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q8LBZ4	317	OTU domain-containing pro	yes	no	0.339	0.302	0.645	4e-34
P22856	867	Putative ubiquitin thioes	N/A	no	0.441	0.144	0.282	4e-05
Q6GM06	294	OTU domain-containing pro	N/A	no	0.339	0.326	0.269	0.0001
Q01804	1113	OTU domain-containing pro	yes	no	0.240	0.061	0.329	0.0002
B2RRE7	1107	OTU domain-containing pro	yes	no	0.240	0.061	0.329	0.0002
Q5M8L0	294	OTU domain-containing pro	no	no	0.367	0.353	0.289	0.0004

>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 79/96 (82%)

Query: 176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF 235
           + + G+  DGRCLFR++AHG CLRSG+  P E+ QRELADELR +V DE ++RR+ETEWF
Sbjct: 168 YSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWF 227

Query: 236 IEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
           +EGDFDTYV++I+ P+VWGGEPEL MASHVL+  I 
Sbjct: 228 VEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPIT 263

Arabidopsis thaliana (taxid: 3702)

>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus GN=L96 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 27/152 (17%)

Query: 135 DSNDSNPETVTFYEE-KISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIA 193
           D + + P +V   +  ++ +  GG    DL +    +   R +KV  V  DG CLFRA+ 
Sbjct: 568 DPSVTPPSSVKIKKRPELPEYKGGNADRDLEI----LARRRGYKVIPVKGDGNCLFRAV- 622

Query: 194 HGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE-----GD--------- 239
            G  LR  + +      +   ++LRAQVV  L   ++  E ++E     GD         
Sbjct: 623 -GKSLRLNQNI------KYSHEDLRAQVVTYLTSHKEFLEPYLEYVTESGDTTPQEYAKN 675

Query: 240 FDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
            + Y+K I +P  WG    L + S +LK + N
Sbjct: 676 VERYIKNISKPGTWGDFICLRVLSEILKVKFN 707

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (By similarity). May be involved in TIV genomic DNA packaging in a manner related to the Gag polyproteins of the mammalian viruses.

Tipula (taxid: 41043)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 19/115 (16%)

Query: 166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL 225
           K  +I+ ER  ++  + +DG C++RAI H           +E+        LR+Q  D +
Sbjct: 140 KLAQILAERELQIRQIPSDGHCMYRAIEHQL---------NEQGNSLTVANLRSQTADYM 190

Query: 226 LKRRKET----------EWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQI 270
            KR ++           + + + +F  Y  +I     WGG+ EL   SH+LK  I
Sbjct: 191 QKRAEDFLPFLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPI 245

Xenopus laevis (taxid: 8355)

>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 181 VLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 240
           V  DG CLFRA+A          V           E+R   +  L + R++ E FIEG F
Sbjct: 39  VAKDGSCLFRAVAEQVLHSQSRHV-----------EVRMACIHYLRENREKFEAFIEGSF 87

Query: 241 DTYVKEIQQPYVWGGEPEL 259
           + Y+K ++ P  W G+ E+
Sbjct: 88  EEYLKRLENPQEWVGQVEI 106

Homo sapiens (taxid: 9606)

>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 181 VLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDF 240
           V  DG CLFRA+A          V           E+R   +  L + R++ E FIEG F
Sbjct: 39  VAKDGSCLFRAVAEQVLHSQSRHV-----------EVRMACIRYLRENREKFEAFIEGSF 87

Query: 241 DTYVKEIQQPYVWGGEPEL 259
           + Y+K ++ P  W G+ E+
Sbjct: 88  EEYLKRLENPQEWVGQVEI 106

Mus musculus (taxid: 10090)

>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 3/107 (2%)

Query: 166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDEL 225
           K   I+ ER  ++  + +DG C++RAI H    R G ++     + + AD ++    D L
Sbjct: 140 KLARILAERELQIRQIPSDGHCMYRAIEHQLRER-GNDLTVANLRSQTADYMQNHAEDFL 198

Query: 226 --LKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQI 270
             L      + + + +F  Y  +I     WGG+ EL   SH+LK  I
Sbjct: 199 PFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAI 245

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
449449405	313	PREDICTED: OTU domain-containing protein	0.886	0.801	0.604	1e-80
296090402	317	unnamed protein product [Vitis vinifera]	0.879	0.785	0.595	2e-75
224113207	318	predicted protein [Populus trichocarpa]	0.904	0.805	0.615	6e-73
359486932	380	PREDICTED: uncharacterized protein LOC10	0.727	0.542	0.630	1e-68
356535547	296	PREDICTED: uncharacterized protein LOC10	0.872	0.834	0.571	1e-67
224097684	326	predicted protein [Populus trichocarpa]	0.918	0.797	0.595	9e-67
84468350	326	hypothetical protein [Trifolium pratense	0.883	0.766	0.527	1e-66
356576317	294	PREDICTED: OTU domain-containing protein	0.869	0.836	0.572	2e-66
148907480	411	unknown [Picea sitchensis]	0.791	0.545	0.397	2e-48
168025394	289	predicted protein [Physcomitrella patens	0.614	0.602	0.513	3e-44

>gi|449449405|ref|XP_004142455.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus] gi|449520841|ref|XP_004167441.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/278 (60%), Positives = 197/278 (70%), Gaps = 27/278 (9%)

Query: 1   MLGVLCARHKPWILNSISLLAHGSFAAHHQNR----FVYSPIHVQSPERRRHHSTACRLG 56
           MLGVLCAR KPWIL S+S   HGS   HH +      V SPI  Q   R+RHHS+AC+L 
Sbjct: 1   MLGVLCARPKPWILVSLSNFIHGSAVYHHHHHQSRLLVQSPI--QFDRRQRHHSSACKLA 58

Query: 57  VGGGGLSVGGGAASIWHAILPSDGCSG---CRRRRNGRRKPGEGSWNAASDERPARWLHR 113
                   GGGAASIWHAI+PS   S    CR   +   + GEGSWN A D RPARWLHR
Sbjct: 59  --------GGGAASIWHAIMPSGAGSSSNLCRPAIHCHERKGEGSWNVAWDARPARWLHR 110

Query: 114 ADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINE 173
            DSAWLLFGVC+C+AP++ W D++    E V+  ++K    +  G   + N +     + 
Sbjct: 111 PDSAWLLFGVCACIAPLD-WVDASH---EAVSL-DQKKEVCESSGPEFNQNDE-----SS 160

Query: 174 RPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETE 233
             ++VTGVLADGRCLFRAIAHGACLRSGEE PD++RQRELADELRA+VVDELLKRRKETE
Sbjct: 161 ADYRVTGVLADGRCLFRAIAHGACLRSGEEAPDDDRQRELADELRAKVVDELLKRRKETE 220

Query: 234 WFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
           W+IEGDFD YVK IQQP+VWGGEPELLMASHVLK  I+
Sbjct: 221 WYIEGDFDAYVKRIQQPFVWGGEPELLMASHVLKTPIS 258

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090402|emb|CBI40221.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/284 (59%), Positives = 195/284 (68%), Gaps = 35/284 (12%)

Query: 1   MLGVLCARHKPWILNSISLLAHGSFAAHHQNRFVY----SPIHVQ---SPERRRHHSTAC 53
           MLGVLCARHKPWIL ++S + HGS   HH +   +    +PI         RRRHHS AC
Sbjct: 1   MLGVLCARHKPWILATLSFV-HGSATHHHLHLNHHHLLGTPIQFNGGGDDHRRRHHSRAC 59

Query: 54  RLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRR------KPGEGSWNAASDERP 107
           R G      S GGGAASIWHAILPS G      RR+  R      + GEGSWN A D RP
Sbjct: 60  RQG------SSGGGAASIWHAILPSGG-----DRRSSLRPALLHDQKGEGSWNVAWDARP 108

Query: 108 ARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKR 167
           ARWLHR DSAWLLFGVC+CLAP+    DS D + E V   +    KI+G    ++++ + 
Sbjct: 109 ARWLHRPDSAWLLFGVCACLAPL----DSFDVDNEVVAVDD----KIEGCNQVNEISDEN 160

Query: 168 CEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLK 227
               +   ++VTGV ADGRCLFRAIAH ACLRSGEE PDE RQ ELAD+LRAQVVDELLK
Sbjct: 161 NN--SSADYRVTGVPADGRCLFRAIAHSACLRSGEEAPDENRQTELADDLRAQVVDELLK 218

Query: 228 RRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
           RR+ETEWFIEG+FD YVK IQQPYVWGGEPEL+MASHVLK  I+
Sbjct: 219 RREETEWFIEGNFDAYVKRIQQPYVWGGEPELIMASHVLKMPIS 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113207|ref|XP_002316423.1| predicted protein [Populus trichocarpa] gi|222865463|gb|EEF02594.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (715), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 171/278 (61%), Positives = 190/278 (68%), Gaps = 22/278 (7%)

Query: 1   MLGVLCARHKP-WILNSISLLAHGSFAAHHQNRFVYSPIHVQ--SPERRRHHSTACRLGV 57
           MLGVLCAR KP WILNS+    H +   HH +    S +H+   S   RRHHS  C    
Sbjct: 1   MLGVLCARPKPNWILNSLFTHFHLNHHHHHNSNNRLS-LHLSGSSTAARRHHSNLCSADS 59

Query: 58  GGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSA 117
           G GG      AA+IWH I P+D     RRR   R   GEGSWNAA D RPARWLHR DSA
Sbjct: 60  GCGG------AAAIWHVIQPAD----WRRRTERRSVRGEGSWNAAWDGRPARWLHRPDSA 109

Query: 118 WLLFGVCSCLAP-IEYWTDSNDSNPETVTFYEEKISKIDGG---GGGDDLNVKRCEIINE 173
           WLLFGVC+CLAP IE+ +D N  N + V   E++  +IDGG      DD      +    
Sbjct: 110 WLLFGVCACLAPAIEFLSDVN--NIDDVDHQEKE--RIDGGDLNASSDDAKQDNSDATVG 165

Query: 174 RPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETE 233
             +KVTGVLADGRCLFRAIAH ACLR+GEE PDE RQRELADELRAQVVDELLKRR+ETE
Sbjct: 166 SDYKVTGVLADGRCLFRAIAHMACLRNGEEAPDENRQRELADELRAQVVDELLKRREETE 225

Query: 234 WFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
           WFIEGDFD YVK IQQPYVWGGEPELLMASHVLK  I+
Sbjct: 226 WFIEGDFDAYVKRIQQPYVWGGEPELLMASHVLKTMIS 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486932|ref|XP_002267087.2| PREDICTED: uncharacterized protein LOC100245448 [Vitis vinifera]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/233 (63%), Positives = 167/233 (71%), Gaps = 27/233 (11%)

Query: 45  RRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDGCSGCRRRRNGRR------KPGEGS 98
           RRRHHS ACR G      S GGGAASIWHAILPS G      RR+  R      + GEGS
Sbjct: 114 RRRHHSRACRQG------SSGGGAASIWHAILPSGG-----DRRSSLRPALLHDQKGEGS 162

Query: 99  WNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGG 158
           WN A D RPARWLHR DSAWLLFGVC+CLAP+    DS D + E V   +    KI+G  
Sbjct: 163 WNVAWDARPARWLHRPDSAWLLFGVCACLAPL----DSFDVDNEVVAVDD----KIEGCN 214

Query: 159 GGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELR 218
             ++++ +     +   ++VTGV ADGRCLFRAIAH ACLRSGEE PDE RQ ELAD+LR
Sbjct: 215 QVNEISDENNN--SSADYRVTGVPADGRCLFRAIAHSACLRSGEEAPDENRQTELADDLR 272

Query: 219 AQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
           AQVVDELLKRR+ETEWFIEG+FD YVK IQQPYVWGGEPEL+MASHVLK  I+
Sbjct: 273 AQVVDELLKRREETEWFIEGNFDAYVKRIQQPYVWGGEPELIMASHVLKMPIS 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535547|ref|XP_003536306.1| PREDICTED: uncharacterized protein LOC100793001 [Glycine max]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/273 (57%), Positives = 181/273 (66%), Gaps = 26/273 (9%)

Query: 1   MLGVLCA-RHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGG 59
           MLGVLCA R KPW+L+ + +  H S                 SP  RR HSTAC+L + G
Sbjct: 1   MLGVLCATRPKPWLLSLVHV--HASLP----RLPHSPLSPSASPPPRRRHSTACKLFLSG 54

Query: 60  GGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRK-PGEGSWNAASDERPARWLHRADSAW 118
           G       AASIWHAI+P  G  G RR         GEGSWN A D RPARWLHR DSAW
Sbjct: 55  GA------AASIWHAIMPR-GDDGLRRGVVAVHDLKGEGSWNVAWDARPARWLHRPDSAW 107

Query: 119 LLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFKV 178
           LLFGVC+CLAP     D+ D+N   +   +E    +D     D+++           ++V
Sbjct: 108 LLFGVCACLAPPPGCVDA-DTNSAGIAV-DESCGLLDKEREEDEVSAD---------YRV 156

Query: 179 TGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEG 238
           TGV ADGRCLFRAIAHGACLR+GE+ PDE RQRELADELRA+VVDELLKRR+ETEWFIEG
Sbjct: 157 TGVPADGRCLFRAIAHGACLRNGEKAPDENRQRELADELRAKVVDELLKRREETEWFIEG 216

Query: 239 DFDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
           DFDTY++ IQQPYVWGGEPELLMASHVLK  I+
Sbjct: 217 DFDTYLQRIQQPYVWGGEPELLMASHVLKTPIS 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097684|ref|XP_002311041.1| predicted protein [Populus trichocarpa] gi|222850861|gb|EEE88408.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (662), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 168/282 (59%), Positives = 185/282 (65%), Gaps = 22/282 (7%)

Query: 1   MLGVLCARHKP-WILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGG 59
           MLGVLCAR KP WILNS+    H     H  N  +   +       RRHHS+ C      
Sbjct: 1   MLGVLCARPKPNWILNSLFTHFHHQHHHHQSNDRLSLHLPHSFTAARRHHSSFC------ 54

Query: 60  GGLSVGGGAASIWHAILPSDGCSGCRRRRNGRRKPGEGSWNAASDERPARWLHRADSAWL 119
                GGGAA+IWH + P+D     RRRR  R   GEGSWN A D RPARWLHR DSAWL
Sbjct: 55  SADCGGGGAAAIWHVVQPADW----RRRRGRRSVRGEGSWNVAWDGRPARWLHRPDSAWL 110

Query: 120 LFGVCSCLAP-IEYWTDSNDSNPETVTF---YEEKISKIDGGG------GGDDLNVKRCE 169
           LFGVC+CLAP IE + D N    E V     ++EK  +IDGG         DD+      
Sbjct: 111 LFGVCACLAPAIELFCDVNIEGGENVVVDVDHQEK-ERIDGGDLNASAVNSDDVKQDSSS 169

Query: 170 IINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRR 229
                 +KVTGVLADGRCLFRAIAH ACLR+GEE PDE RQRELADELRAQVVDELLKRR
Sbjct: 170 STAGSDYKVTGVLADGRCLFRAIAHMACLRNGEEAPDENRQRELADELRAQVVDELLKRR 229

Query: 230 KETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
           +ETEWFIEGDFD YVK IQQPYVWGGEPELLMASHVLK  I+
Sbjct: 230 EETEWFIEGDFDAYVKRIQQPYVWGGEPELLMASHVLKTMIS 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468350|dbj|BAE71258.1| hypothetical protein [Trifolium pratense]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/292 (52%), Positives = 187/292 (64%), Gaps = 42/292 (14%)

Query: 1   MLGVLCA-RHKPWILNSI----------SLLAHGSFAAHHQNRFVYSPIHVQSPERRRHH 49
           MLGVLCA R +PWI + +          + LAH + A+        SP    +   RR+H
Sbjct: 1   MLGVLCATRSRPWIFSFLHHSSSHHHHTARLAHITVASSSS----LSPTFFSA---RRNH 53

Query: 50  STACRLGVGGGGLSVGGGAASIWHAILPSDG---CSGCRRRRNGRRKPGEGSWNAASDER 106
           S+ C+L +     S GGGAASIWHAI+P  G     G     +     GEGSWN A D R
Sbjct: 54  SSQCKLQI-----SAGGGAASIWHAIMPCGGDGFQRGAFMVHHDHELKGEGSWNVAWDAR 108

Query: 107 PARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNP-ETVTFYEEKISKIDGGGGGDDLNV 165
           PARWLHR+DSAWLLFGV + LAP     D +   P  T     ++IS+ +G      L +
Sbjct: 109 PARWLHRSDSAWLLFGVRAWLAPPPVIVDVDPEVPLPTSVISPDEISRSEG------LEI 162

Query: 166 KRCEIINERP-------FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELR 218
           K  E  +++P       ++VTGVLADGRCLFRA+AHGACL++GEE P+E RQRELADELR
Sbjct: 163 KDAE--SDKPNDELSSDYRVTGVLADGRCLFRALAHGACLKNGEEAPNENRQRELADELR 220

Query: 219 AQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQI 270
           A+V +ELLKRRKETEWFIEGDFDTYV  IQQ +VWGGEPELLMASHVLK  I
Sbjct: 221 AKVAEELLKRRKETEWFIEGDFDTYVTRIQQSFVWGGEPELLMASHVLKTPI 272

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576317|ref|XP_003556279.1| PREDICTED: OTU domain-containing protein At3g57810-like [Glycine max]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/274 (57%), Positives = 180/274 (65%), Gaps = 28/274 (10%)

Query: 1   MLGVLCA-RHKPWILNSISLLAHGSFAAHHQNRFVYSPIHVQSPERRRHHSTACRLGVGG 59
           MLGVLCA R KPW+ +    L H S           S     SP  RR HSTAC+L +  
Sbjct: 1   MLGVLCATRSKPWLFS----LVHASLPRLSHAPLSPS----ASPPPRRRHSTACKLFLSA 52

Query: 60  GGLSVGGGAASIWHAILPS-DGCSGCRRRRNG-RRKPGEGSWNAASDERPARWLHRADSA 117
           GG      AASIWHAI+P  +   G RR         GEGSWN A D RPARWLHR DSA
Sbjct: 53  GG------AASIWHAIMPRVNDDDGFRRGVVAFHDMKGEGSWNVAWDARPARWLHRPDSA 106

Query: 118 WLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEKISKIDGGGGGDDLNVKRCEIINERPFK 177
           WLLFGVC+CLAP     D+ D+N + +   +E    +D          +R E      ++
Sbjct: 107 WLLFGVCACLAPPSSCVDA-DTNTDAIAV-DESCRLLDK---------EREEYEVSADYR 155

Query: 178 VTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE 237
           VTGV ADGRCLFRAIAHGACLR+GE+ PDE RQRELADELRA+VVDEL+KRR+ETEWFIE
Sbjct: 156 VTGVPADGRCLFRAIAHGACLRNGEKAPDENRQRELADELRAKVVDELMKRREETEWFIE 215

Query: 238 GDFDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
           GDFDTYV+ IQQPYVWGGEPELLMASHVLK  I+
Sbjct: 216 GDFDTYVQRIQQPYVWGGEPELLMASHVLKTPIS 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148907480|gb|ABR16871.1| unknown [Picea sitchensis]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/302 (39%), Positives = 155/302 (51%), Gaps = 78/302 (25%)

Query: 30  QNRFVYSPI----HVQSPERRRHHSTACRLGVGGGGLSVGGGAASIWHAILPSDG----- 80
            N F ++ I    H+ + +R +HHS++C L        +G   A+IWHA++PS       
Sbjct: 81  NNNFQHNSIETCCHLSNAKRAQHHSSSCLLAEN----HIGSVGATIWHALIPSSSQFSHT 136

Query: 81  ------------------CSGCRRRRNGRRKPG----------------------EGSWN 100
                             C+  R    G  +                        EGSWN
Sbjct: 137 QQVPNVENGKIRAESNSLCNFSRSNSVGFERSSIGIYGKCDSMTCPKLPVVGGFSEGSWN 196

Query: 101 AASDERPARWLHRADSAWLLFGVCSCLAPIE------------YWTDSNDSNPETVTFYE 148
           A  D RPARWLH + SAWLLFGVC+C + +                D ND N       +
Sbjct: 197 ATWDVRPARWLHGSHSAWLLFGVCACFSSLNPAHSEAETVEVVAGIDENDVN----NALD 252

Query: 149 EKISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEE 208
           + I   D    G  + +          + VT +  DGRCLFRA+AHGA LRSG+  P+E 
Sbjct: 253 DAIPAADQASHGKKVYID---------YSVTAIPGDGRCLFRAVAHGASLRSGKPAPNES 303

Query: 209 RQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKD 268
            QRELADELR +V DELLKRR+ETEWFIEGDFD YV++I++P+VWGGEPELLMASHVL+ 
Sbjct: 304 LQRELADELRTRVADELLKRREETEWFIEGDFDKYVEQIKRPHVWGGEPELLMASHVLQM 363

Query: 269 QI 270
            I
Sbjct: 364 PI 365

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168025394|ref|XP_001765219.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683538|gb|EDQ69947.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 119/189 (62%), Gaps = 15/189 (7%)

Query: 96  EGSWNAASDERPARWLHRADSAWLLFGVCSCLAPIEYWTDSNDSNPETVTFYEEK----- 150
           EGSWN A D RPARWLH   SAWLLFGVC+C +       + +S+P       +      
Sbjct: 51  EGSWNVAWDARPARWLHGRHSAWLLFGVCACFSAAAVPLITAESSPVVAEAVVDSLPPPT 110

Query: 151 -ISKIDGGGGGDDLNVKRC-------EIINERPFKVTGVLADGRCLFRAIAHGACLRSGE 202
            +S  +       L   +        EII +  + VTG+  DGRCLFRA+AHG+CLR G+
Sbjct: 111 ALSDPENKSADPTLVTPQTEHCGHGKEIITD--YTVTGIPGDGRCLFRAVAHGSCLRRGK 168

Query: 203 EVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMA 262
           + PDE  QRELADELR +V DEL+KRR  TEWFIEGDFD YV+ ++Q YVWGGEPELLM 
Sbjct: 169 DAPDETAQRELADELRNKVADELIKRRDSTEWFIEGDFDQYVERMRQTYVWGGEPELLML 228

Query: 263 SHVLKDQIN 271
           SHVL+  I 
Sbjct: 229 SHVLEMPIT 237

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2095748	317	AT3G57810 "AT3G57810" [Arabido	0.325	0.290	0.663	8.5e-33
TAIR|locus:504955906	234	AT2G38025 "AT2G38025" [Arabido	0.332	0.401	0.330	4.3e-06

TAIR|locus:2095748 AT3G57810 "AT3G57810" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 61/92 (66%), Positives = 78/92 (84%)

Query:   176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF 235
             + + G+  DGRCLFR++AHG CLRSG+  P E+ QRELADELR +V DE ++RR+ETEWF
Sbjct:   168 YSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWF 227

Query:   236 IEGDFDTYVKEIQQPYVWGGEPELLMASHVLK 267
             +EGDFDTYV++I+ P+VWGGEPEL MASHVL+
Sbjct:   228 VEGDFDTYVRQIRDPHVWGGEPELFMASHVLQ 259

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:504955906 AT2G38025 "AT2G38025" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 34/103 (33%), Positives = 51/103 (49%)

Query:   176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF 235
             + V  V  DGRCLFRA+  G     G  + + +R+R+ ADELR  V + +    KE E +
Sbjct:    76 YAVDRVKGDGRCLFRALVKGMAFNKGITL-NPQRERDDADELRMAVKEVICNDPKEREKY 134

Query:   236 --------IEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQI 270
                     ++     + + I +   WGGE ELL+ S + K  I
Sbjct:   135 KEALVAITVDESLKRFCQRIGRHDFWGGESELLVLSKLCKQPI 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       241   0.00094  113 3  11 22  0.40    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  228 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.25u 0.10s 20.35t   Elapsed:  00:00:01
  Total cpu time:  20.25u 0.10s 20.35t   Elapsed:  00:00:01
  Start:  Mon May 20 22:14:57 2013   End:  Mon May 20 22:14:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	2e-16

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 73.3 bits (180), Expect = 2e-16
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 183 ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDT 242
            DG CLF A++                ++EL DELR  VV+ L + R++ E F+E D + 
Sbjct: 2   GDGNCLFHAVSDQLGD---------AGRQELHDELREAVVEYLRENREDFEKFLEEDENE 52

Query: 243 YVKEIQQPYVWGGEPELLMASHVLKDQI 270
           Y K I +   WGG  E+   +H+L+  I
Sbjct: 53  YYKWISKDGAWGGNIEIFALAHILRVPI 80

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.91
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.86
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.49
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.38
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.3
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.05
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.74
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.31
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	80.66

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1e-24  Score=203.84  Aligned_cols=124  Identities=35%  Similarity=0.468  Sum_probs=96.1

Q ss_pred             CCCCCcccchhhhhccCCeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhc
Q 023365          158 GGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE  237 (283)
Q Consensus       158 ~~~~~~~~~~~~kl~~~gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle  237 (283)
                      ++.........+++..++|.+++||+||+|||+||+|||..+++..++++.||.+.+++||.++.||+.+-.+.-..++.
T Consensus       141 ~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~  220 (302)
T KOG2606|consen  141 DAKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSL  220 (302)
T ss_pred             chhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccC
Confidence            34444556888999999999999999999999999999999877767665554444444444444444443333333333


Q ss_pred             C--CHHHHHHhhcCCCccCCHHHHHHHHHhhCCcEEEEeCC-ceeee
Q 023365          238 G--DFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMS-LLVEL  281 (283)
Q Consensus       238 ~--~fdeYc~~M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s-plve~  281 (283)
                      +  +|++||++|++++.|||+|||.|+|++|++||+||+-+ |+.+|
T Consensus       221 ~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~~~~  267 (302)
T KOG2606|consen  221 GPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPILEY  267 (302)
T ss_pred             CHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCceee
Confidence            3  69999999999999999999999999999999999975 77765

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.86  E-value=2.8e-22  Score=160.38  Aligned_cols=81  Identities=40%  Similarity=0.590  Sum_probs=70.9

Q ss_pred             CCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHh-hChhhhhhhhcCCHHHHHHhhcCCCccCCHHHHH
Q 023365          182 LADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELL-KRRKETEWFIEGDFDTYVKEIQQPYVWGGEPELL  260 (283)
Q Consensus       182 pgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~-~n~deFE~Fle~~fdeYc~~M~k~gtWGG~iEL~  260 (283)
                      ||||||||||||+||+...+.       .+..|.+||+.+++||+ .|++.|+.|++++      +|+++++|||++||+
T Consensus         1 pgDGnClF~Avs~~l~~~~~~-------~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~   67 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGG-------SEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQ   67 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SS-------STTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHH
T ss_pred             CCCccHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHH
Confidence            799999999999999844210       13579999999999999 9999999998766      999999999999999


Q ss_pred             HHHHhhCCcEEEEeC
Q 023365          261 MASHVLKDQINHPHM  275 (283)
Q Consensus       261 ALA~lL~v~I~V~~~  275 (283)
                      |+|++|+++|.||+.
T Consensus        68 a~a~~~~~~I~v~~~   82 (121)
T PF02338_consen   68 ALANVLNRPIIVYSS   82 (121)
T ss_dssp             HHHHHHTSEEEEECE
T ss_pred             HHHHHhCCeEEEEEc
Confidence            999999999999875

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.3e-14  Score=133.05  Aligned_cols=93  Identities=23%  Similarity=0.242  Sum_probs=82.9

Q ss_pred             CeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhh-hhhhcCCHHHHHHhhcCCCcc
Q 023365          175 PFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKET-EWFIEGDFDTYVKEIQQPYVW  253 (283)
Q Consensus       175 gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deF-E~Fle~~fdeYc~~M~k~gtW  253 (283)
                      -+.++.||.|+.|||+||++.+....+.          ...+||+.+++.+..||+.| +++++..-.|||++|.|+..|
T Consensus       109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~----------~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsW  178 (307)
T KOG3288|consen  109 VLSRRVVPDDNSCLFTAIAYVIFKQVSN----------RPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSW  178 (307)
T ss_pred             eeEEEeccCCcchhhhhhhhhhcCccCC----------CcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHcccccc
Confidence            4678889999999999999999743211          12689999999999999999 888999999999999999999


Q ss_pred             CCHHHHHHHHHhhCCcEEEEeCCc
Q 023365          254 GGEPELLMASHVLKDQINHPHMSL  277 (283)
Q Consensus       254 GG~iEL~ALA~lL~v~I~V~~~sp  277 (283)
                      ||.|||..||+.|++.|.|++++.
T Consensus       179 GGaIElsILS~~ygveI~vvDiqt  202 (307)
T KOG3288|consen  179 GGAIELSILSDYYGVEICVVDIQT  202 (307)
T ss_pred             CceEEeeeehhhhceeEEEEecce
Confidence            999999999999999999999874

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=2.5e-13  Score=131.66  Aligned_cols=102  Identities=26%  Similarity=0.338  Sum_probs=89.0

Q ss_pred             cchhhhhccCCeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcCCHHHHH
Q 023365          165 VKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYV  244 (283)
Q Consensus       165 ~~~~~kl~~~gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle~~fdeYc  244 (283)
                      ..........++.++.|..||||+|||+++|++..           .+.|+++|+++++++.++++.|+.|+.++|..|+
T Consensus       207 ~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d-----------~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~  275 (371)
T KOG2605|consen  207 ERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGD-----------DEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYI  275 (371)
T ss_pred             HHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcC-----------HHHHHHHHHHHHHHHhhcccccccccccchhhcc
Confidence            34455556789999999999999999999999963           3689999999999999999999999999999999


Q ss_pred             HhhcCCCccCCHHHHHHHHH---hhCCcEEEEeCCc
Q 023365          245 KEIQQPYVWGGEPELLMASH---VLKDQINHPHMSL  277 (283)
Q Consensus       245 ~~M~k~gtWGG~iEL~ALA~---lL~v~I~V~~~sp  277 (283)
                      +.+++++.||+++|+||+|.   ....++.|.+.+.
T Consensus       276 k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~  311 (371)
T KOG2605|consen  276 KRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKD  311 (371)
T ss_pred             cccccCCCCcchHHHhhhhhhhhhccccceeecccc
Confidence            99999999999999999995   5566666666553

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.30  E-value=1.3e-11  Score=111.66  Aligned_cols=64  Identities=14%  Similarity=0.111  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHhhChhhhhhhhc----CCHHHHHHh-hcCCCccCCHHHHHHHHHhhCCcEEEEeCC
Q 023365          213 LADELRAQVVDELLKRRKETEWFIE----GDFDTYVKE-IQQPYVWGGEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       213 ~h~eLR~~VvdyL~~n~deFE~Fle----~~fdeYc~~-M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      ....+|..++.||+.|+++|++|++    .++++||++ +...+.-.+++.+.|||++|+++|.|+.++
T Consensus       138 iV~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld  206 (244)
T PF10275_consen  138 IVIFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLD  206 (244)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESS
T ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEec
Confidence            3348999999999999999999997    579999964 677788999999999999999999999876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=2.8e-10  Score=104.59  Aligned_cols=65  Identities=14%  Similarity=0.103  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHhhChhhhhhhhcC--CHHHHHHhhcCC-CccCCHHHHHHHHHhhCCcEEEEeCC
Q 023365          212 ELADELRAQVVDELLKRRKETEWFIEG--DFDTYVKEIQQP-YVWGGEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       212 ~~h~eLR~~VvdyL~~n~deFE~Fle~--~fdeYc~~M~k~-gtWGG~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      ....++|..+..+|++|+|+|++|+++  +.++||++-..| .+-.|+++|.|||+++.+.|.|.+++
T Consensus       154 yiV~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~d  221 (256)
T KOG3991|consen  154 YIVMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVD  221 (256)
T ss_pred             HHHHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEec
Confidence            445689999999999999999999975  899999986655 67899999999999999999998875

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=3.4e-09  Score=100.06  Aligned_cols=109  Identities=16%  Similarity=-0.008  Sum_probs=84.9

Q ss_pred             chhhhhccCCeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhc-------C
Q 023365          166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE-------G  238 (283)
Q Consensus       166 ~~~~kl~~~gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle-------~  238 (283)
                      ...+++-...+.-..++|||+|+|.+|++||..+-. ..   ++  ..-..+|-.-..|..++...|..|.-       .
T Consensus       161 ~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~-~V---dv--~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~  234 (306)
T COG5539         161 EIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH-VV---DV--DKDSEDRYNSHPYVQRISILFTGIHFDEETLAMV  234 (306)
T ss_pred             CcchHHHHHhhhccccCCCceEEEeEeccccceeee-ee---ec--chhHHhhccCChhhhhhhhhhcccccchhhhhcc
Confidence            445555566788889999999999999999976421 11   11  12367777788888777888866642       3


Q ss_pred             CHHHHHHhhcCCCccCCHHHHHHHHHhhCCcEEEEeCC-ceee
Q 023365          239 DFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMS-LLVE  280 (283)
Q Consensus       239 ~fdeYc~~M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s-plve  280 (283)
                      .|++||+.|+-+..||+.+|+++||..|++|+.+++.. |...
T Consensus       235 ~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik  277 (306)
T COG5539         235 LWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIK  277 (306)
T ss_pred             hHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCceEE
Confidence            79999999999999999999999999999999998864 5543

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=5.1e-07  Score=85.59  Aligned_cols=83  Identities=24%  Similarity=0.133  Sum_probs=74.4

Q ss_pred             CCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhc-CCHHHHHHhhcCCCccC-CHHHH
Q 023365          182 LADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE-GDFDTYVKEIQQPYVWG-GEPEL  259 (283)
Q Consensus       182 pgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle-~~fdeYc~~M~k~gtWG-G~iEL  259 (283)
                      ..|..|+|++.+..++.             ....+||..|+..+.+|||.|.+.+. -+--.|+.++.++-.|| |.+|+
T Consensus       118 ~~d~srl~q~~~~~l~~-------------asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~iei  184 (306)
T COG5539         118 QDDNSRLFQAERYSLRD-------------ASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEI  184 (306)
T ss_pred             CCchHHHHHHHHhhhhh-------------hhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEE
Confidence            36899999999998852             25689999999999999999988875 48999999999999999 99999


Q ss_pred             HHHHHhhCCcEEEEeCCc
Q 023365          260 LMASHVLKDQINHPHMSL  277 (283)
Q Consensus       260 ~ALA~lL~v~I~V~~~sp  277 (283)
                      .++|+.|++.|.|+++..
T Consensus       185 a~iS~~l~v~i~~Vdv~~  202 (306)
T COG5539         185 AIISDQLPVRIHVVDVDK  202 (306)
T ss_pred             eEeccccceeeeeeecch
Confidence            999999999999998863

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.66  E-value=6.7  Score=32.33  Aligned_cols=67  Identities=16%  Similarity=0.266  Sum_probs=45.0

Q ss_pred             eCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcCCHHHHHHhhcC--CCccCCHHH
Q 023365          181 VLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQ--PYVWGGEPE  258 (283)
Q Consensus       181 IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle~~fdeYc~~M~k--~gtWGG~iE  258 (283)
                      +..|+|||-=||+..|...              -+    .+.+-|+.|.        .+.+.||.++++  +.||-|   
T Consensus         3 ~sR~NNCLVVAis~~L~~T--------------~e----~l~~~M~An~--------~~i~~y~~W~r~~~~STW~D---   53 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGVT--------------LE----KLDNLMQANV--------STIKKYHTWLRKKRPSTWDD---   53 (104)
T ss_pred             ccCCCCeEeehHHHHhcch--------------HH----HHHHHHHhhH--------HHHHHHHHHHhcCCCCcHHH---
Confidence            4679999999999999531              11    1122233331        137788988765  468865   


Q ss_pred             HHHHHHhhCCcEEEEeCC
Q 023365          259 LLMASHVLKDQINHPHMS  276 (283)
Q Consensus       259 L~ALA~lL~v~I~V~~~s  276 (283)
                      ..++|+.|++.|.|--.+
T Consensus        54 C~mFA~~LkVsm~vkV~~   71 (104)
T PF05415_consen   54 CRMFADALKVSMQVKVLS   71 (104)
T ss_pred             HHHHHHhheeEEEEEEcC
Confidence            578999999999875443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-19
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	3e-19
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	7e-18
3pfy_A	185	OTU domain-containing protein 5; structural genomi	5e-14

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 82.8 bits (204), Expect = 2e-19
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 7/95 (7%)

Query: 176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF 235
           F++     DG C + +IA        +        + L +    +   E           
Sbjct: 31  FEIVRQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRLTESAARKYYQEE-----PEARL 83

Query: 236 IEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQI 270
           +    + Y+K +     WG   E  M +  +   I
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITI 118

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 83.1 bits (205), Expect = 3e-19
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 173 ERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKE- 231
           E    V  VL D  CLF AIA+   +   +             +LR  V  E+L    + 
Sbjct: 17  ENVLSVHPVLDDNSCLFHAIAY--GIFKQDS----------VRDLREMVSKEVLNNPVKF 64

Query: 232 TEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
            +  ++     Y + I +   WGG  E+ + S  L   I 
Sbjct: 65  NDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIY 104

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 79.4 bits (195), Expect = 7e-18
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWF 235
           F++     DG C + +IA        +        + L +    +   E     +     
Sbjct: 31  FEIVRQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRLTESAARKYYQE-----EPEARL 83

Query: 236 IEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQI 270
           +    + Y+K +     WG   E  M +  +   I
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITI 118

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 67.9 bits (165), Expect = 5e-14
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 169 EIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKR 228
            + +++ F +  +  DG CLFRA+A                 +++ + +R   +D L+K 
Sbjct: 52  ALRDKKGFIIKQMKEDGACLFRAVADQVY-----------GDQDMHEVVRKHCMDYLMKN 100

Query: 229 RKETEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKDQIN 271
                 ++  DF TY+   ++    G   E+   + +    + 
Sbjct: 101 ADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVE 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.96
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.94
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.91
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.9
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.77
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.69
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.66
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.61
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	97.39
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	97.35

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.96  E-value=8.5e-30  Score=223.58  Aligned_cols=101  Identities=20%  Similarity=0.358  Sum_probs=76.3

Q ss_pred             cchhhhhccCCeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcCCHHHHH
Q 023365          165 VKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYV  244 (283)
Q Consensus       165 ~~~~~kl~~~gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle~~fdeYc  244 (283)
                      ++...+++.+||++++||+|||||||||++||+..           +..|.+||+.+++||++|++.|++|++++|++||
T Consensus        48 ~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~-----------~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~  116 (185)
T 3pfy_A           48 WFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGD-----------QDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYI  116 (185)
T ss_dssp             HHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSC-----------GGGHHHHHHHHHHHHHHTHHHHTTCC--------
T ss_pred             HHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            35555567899999999999999999999999853           2468999999999999999999999999999999


Q ss_pred             HhhcCCCccCCHHHHHHHHHhhCCcEEEEeCC
Q 023365          245 KEIQQPYVWGGEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       245 ~~M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      ++|+++++|||++||+|||++|+++|.||+.+
T Consensus       117 ~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~  148 (185)
T 3pfy_A          117 NRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYS  148 (185)
T ss_dssp             ---------CCHHHHHHHHHHHTSCEEEESSC
T ss_pred             HHhhCCCccchHHHHHHHHHhhCCcEEEEECC
Confidence            99999999999999999999999999999975

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.94  E-value=2.4e-27  Score=210.99  Aligned_cols=98  Identities=27%  Similarity=0.406  Sum_probs=87.5

Q ss_pred             ccCCeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhh-hhhhcCCHHHHHHhhcCC
Q 023365          172 NERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKET-EWFIEGDFDTYVKEIQQP  250 (283)
Q Consensus       172 ~~~gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deF-E~Fle~~fdeYc~~M~k~  250 (283)
                      ...+|++++||+|||||||||++|| +..           ..|.+||+.+++||++|++.| +.|++++|++||++|+++
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~-----------~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~   83 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQ-----------DSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKM   83 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSS-----------CCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTST
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCc-----------hHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCC
Confidence            3458999999999999999999999 531           357899999999999999999 577889999999999999


Q ss_pred             CccCCHHHHHHHHHhhCCcEEEEeCC--ceeee
Q 023365          251 YVWGGEPELLMASHVLKDQINHPHMS--LLVEL  281 (283)
Q Consensus       251 gtWGG~iEL~ALA~lL~v~I~V~~~s--plve~  281 (283)
                      ++|||++||+|||++|+++|.||+.+  ++.++
T Consensus        84 ~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~  116 (212)
T 3by4_A           84 ESWGGAIEIGIISDALAVAIYVVDIDAVKIEKF  116 (212)
T ss_dssp             TSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEE
T ss_pred             CEEccHHHHHHHHHHHCCCEEEEECCCCCeEEe
Confidence            99999999999999999999999965  45544

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.91  E-value=1.4e-24  Score=190.02  Aligned_cols=95  Identities=14%  Similarity=0.196  Sum_probs=82.1

Q ss_pred             CeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcCCHHHHHHhhcCCCccC
Q 023365          175 PFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWG  254 (283)
Q Consensus       175 gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle~~fdeYc~~M~k~gtWG  254 (283)
                      .+.+.+||+|||||||||++||+.+  .+...   .+..|.+||+.+++||++|++.  .+++++|++||++|+++++||
T Consensus        30 ~~~v~rv~gDGnCLFrAva~qL~~~--~~~~~---~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WG  102 (185)
T 3phx_A           30 YFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWG  102 (185)
T ss_dssp             HEEEECCCSSTTHHHHHHHHHHSTT--CCTTT---HHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCC
T ss_pred             CeEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccC
Confidence            4899999999999999999999853  11111   1245999999999999999998  467899999999999999999


Q ss_pred             CHHHHHHHHHhhCCcEEEEeCC
Q 023365          255 GEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       255 G~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      |++||+|||++|+++|+|++.+
T Consensus       103 g~iEL~Als~~~~v~I~V~~~d  124 (185)
T 3phx_A          103 STLEASMLAKEMGITIIIWTVA  124 (185)
T ss_dssp             BHHHHHHHHHHHCCCEEEEEC-
T ss_pred             cHHHHHHHHHHHCCcEEEEEec
Confidence            9999999999999999999864

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.90  E-value=4.1e-24  Score=191.99  Aligned_cols=95  Identities=14%  Similarity=0.196  Sum_probs=82.4

Q ss_pred             CeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhhhhhcCCHHHHHHhhcCCCccC
Q 023365          175 PFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQPYVWG  254 (283)
Q Consensus       175 gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE~Fle~~fdeYc~~M~k~gtWG  254 (283)
                      .|.+.+||+|||||||||++||+.+  .+...   .+..|.+||+.+++||++|++.  .+++++|++||++|+++++||
T Consensus        30 ~~~V~rvpgDGnCLFrAVs~qL~~~--~~~~~---~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WG  102 (219)
T 3phu_A           30 YFEIVRQPGDGNCFYHSIAELTMPN--KTDHS---YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWG  102 (219)
T ss_dssp             HEEEECCCCSSCHHHHHHHHHHCTT--CCTTT---HHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCC
T ss_pred             ceEEEccCCCCchHHHHHHHHHhCC--Cccch---hhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccC
Confidence            4899999999999999999999753  11111   1245999999999999999998  467899999999999999999


Q ss_pred             CHHHHHHHHHhhCCcEEEEeCC
Q 023365          255 GEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       255 G~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      |++||+|||++|+++|+|++++
T Consensus       103 G~iEL~AlS~~~~v~I~V~~~d  124 (219)
T 3phu_A          103 STLEASMLAKEMGITIIIWTVA  124 (219)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEES
T ss_pred             CHHHHHHHHHHhCCCEEEEEec
Confidence            9999999999999999999754

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.77  E-value=1e-18  Score=157.56  Aligned_cols=64  Identities=14%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHhhChhhhhhhhcC--CHHHHHH-hhcCCCccCCHHHHHHHHHhhCCcEEEEeCC
Q 023365          213 LADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       213 ~h~eLR~~VvdyL~~n~deFE~Fle~--~fdeYc~-~M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      ....||..++.||++|+++|++|+++  +|++||+ .|+.+++|||++||+|||++|+++|+|++++
T Consensus       131 iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d  197 (234)
T 1tff_A          131 IVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVD  197 (234)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcC
Confidence            45679999999999999999999976  8999999 7999999999999999999999999999875

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.69  E-value=1.2e-16  Score=143.64  Aligned_cols=64  Identities=22%  Similarity=0.234  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHhhChhhhhhhhcC--CHHHHHH-hhcCCCccCCHHHHHHHHHhhCCcEEEEeCC
Q 023365          213 LADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       213 ~h~eLR~~VvdyL~~n~deFE~Fle~--~fdeYc~-~M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      ....||..+++||++|+++|++|+++  ++++||+ .++.+++|||++||+|||++|+++|+|++++
T Consensus       134 ~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d  200 (234)
T 2zfy_A          134 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMD  200 (234)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcC
Confidence            44589999999999999999999976  8999997 5999999999999999999999999999975

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.66  E-value=3.3e-16  Score=145.55  Aligned_cols=65  Identities=14%  Similarity=0.078  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHhhChhhhhhhhcC--CHHHHHH-hhcCCCccCCHHHHHHHHHhhCCcEEEEeCC
Q 023365          212 ELADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       212 ~~h~eLR~~VvdyL~~n~deFE~Fle~--~fdeYc~-~M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      ....+||..++.||+.|+++|++|+++  ++++||+ +|+..++|||++||+|||++|+++|.|++++
T Consensus       168 ~iv~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylD  235 (284)
T 4dhi_B          168 YILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMD  235 (284)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEec
Confidence            455689999999999999999999975  8999999 7999999999999999999999999999875

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.61  E-value=2.1e-15  Score=144.54  Aligned_cols=64  Identities=22%  Similarity=0.234  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhhChhhhhhhhcC--CHHHHHH-hhcCCCccCCHHHHHHHHHhhCCcEEEEeCC
Q 023365          213 LADELRAQVVDELLKRRKETEWFIEG--DFDTYVK-EIQQPYVWGGEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       213 ~h~eLR~~VvdyL~~n~deFE~Fle~--~fdeYc~-~M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      ....||..++.||+.|+++|++|+++  ++++||+ .|...++|||++||+|||+.|+++|.|++++
T Consensus       299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld  365 (399)
T 4ddg_A          299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMD  365 (399)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECS
T ss_pred             HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcC
Confidence            56689999999999999999999986  7999999 8999999999999999999999999998754

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=97.39  E-value=0.00049  Score=67.30  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=67.7

Q ss_pred             CCeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChhhhh---------hhh--c----C
Q 023365          174 RPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETE---------WFI--E----G  238 (283)
Q Consensus       174 ~gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~deFE---------~Fl--e----~  238 (283)
                      ..|......||||||-+|++..+.+.   .=.+-.||+..+.-|++.-. -+..+...+|         .|.  +    .
T Consensus       187 ~rL~pL~t~GDGNCLLHAvSqamWGV---~DrdlvLRkaL~~~L~~~~~-~f~~RW~~~e~~q~q~~gL~y~lde~ewq~  262 (454)
T 3zrh_A          187 SRLYALWNRTAGDCLLDSVLQATWGI---YDKDSVLRKALHDSLHDCSH-WFYTRWKDWESWYSQSFGLHFSLREEQWQE  262 (454)
T ss_dssp             CCEEEBCCCCSSCHHHHHHHHTTTSS---CCGGGHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred             cceeEeeecCCCccHHHHHHHHhhcc---cCCcHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhhcCCcccccHHHHHH
Confidence            35777888999999999999999853   22344556666666654322 2333333222         221  2    3


Q ss_pred             CHHHHHHhhcCCCccCCHHHHHHHHHhhCCcEEEEeCCc
Q 023365          239 DFDTYVKEIQQPYVWGGEPELLMASHVLKDQINHPHMSL  277 (283)
Q Consensus       239 ~fdeYc~~M~k~gtWGG~iEL~ALA~lL~v~I~V~~~sp  277 (283)
                      +|+.-++....||+==-++-+.+||++|++||+||...-
T Consensus       263 EW~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~  301 (454)
T 3zrh_A          263 DWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKY  301 (454)
T ss_dssp             HHHHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSS
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEecccc
Confidence            466666666778876678999999999999999998643

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=97.35  E-value=0.00034  Score=67.34  Aligned_cols=100  Identities=16%  Similarity=0.181  Sum_probs=59.4

Q ss_pred             CCeEEEEeCCCCchhhHHHHHhHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhhChh----hhhhh-------hcC----
Q 023365          174 RPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRK----ETEWF-------IEG----  238 (283)
Q Consensus       174 ~gL~I~~IpgDGNCLFRAIS~QL~~~~G~~~t~~~Lrq~~h~eLR~~VvdyL~~n~d----eFE~F-------le~----  238 (283)
                      ..|....+.||||||.+|++..+++...   .+-.||+..+.-||+.....++.+..    .+..|       .+.    
T Consensus       110 ~rL~pL~t~GDGnCLLHAvSqamWGv~D---rdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~  186 (390)
T 3dkb_A          110 RKLVALKTNGDGNCLMHATSQYMWGVQD---TDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWND  186 (390)
T ss_dssp             CCEEEBCCCCSSCHHHHHHHHHHHSSCS---TTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSH
T ss_pred             cceEEEEecCCCchHHHHHhHHhcCCCC---HhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHH
Confidence            3577778899999999999999996421   23344555555555433222222111    01112       222    


Q ss_pred             CHHHHHHhhcCCCc-------c--CCHHHHHHHHHhhCCcEEEEeCC
Q 023365          239 DFDTYVKEIQQPYV-------W--GGEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       239 ~fdeYc~~M~k~gt-------W--GG~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      +|+.-++....+..       +  =-++-+.+||++|++||+||...
T Consensus       187 EW~~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~  233 (390)
T 3dkb_A          187 EWDNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDK  233 (390)
T ss_dssp             HHHHHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECC
T ss_pred             HHHHHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEech
Confidence            35554544433211       1  23789999999999999999643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.67

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.2e-16  Score=140.11  Aligned_cols=62  Identities=13%  Similarity=0.106  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhhChhhhhhhhcC--CHHHHHHh-hcCCCccCCHHHHHHHHHhhCCcEEEEeCC
Q 023365          215 DELRAQVVDELLKRRKETEWFIEG--DFDTYVKE-IQQPYVWGGEPELLMASHVLKDQINHPHMS  276 (283)
Q Consensus       215 ~eLR~~VvdyL~~n~deFE~Fle~--~fdeYc~~-M~k~gtWGG~iEL~ALA~lL~v~I~V~~~s  276 (283)
                      ..||..++.||+.|++.|++|+++  ++++||.+ |.++++|||++||+|||++|+++|+|++++
T Consensus       127 ~~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d  191 (228)
T d1tffa_         127 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVD  191 (228)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEec
Confidence            368999999999999999999964  79999986 899999999999999999999999999874