Citrus Sinensis ID: 023366

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAHGWADGNKDADIDDATGANNADCIPKEDNGAWWELESSDAEAIS
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHccccEEEEEccccccccccccccccHHHHHHcHHHHHHHHHccccccHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHccccEEEEEcccccccccEcEEEEcHHHHHcccccHHcccEccccccHHHHHHcccccccHHHHHcccccccccccccccccccccHHcccccccccEEEEEcccccccc
Coil and Loop (DISEMBL)
mvayanshafsyvpQVVREQREERKLFNQLenrgvikpaepyvcgvcgrrfysneKLVNHFKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKRAGfwvrtvsdkpqaADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLewtyspevekkahgwadgnkdadiddatgannadcipkedngawwelessdaeais
Flexible Loop (DISEMBL)
mvayanshafsyvpqvvrEQREERKLFnqlenrgvikpaepyVCGVCGRRFYSNEKLVNHFKQIHEreqkkrlnqiesargkrrvhlvgkysmkmekYKRAARAILTPKIGYGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKyrclktvvvgdindgalKRIADASFSWRDILMGKAKKeavsvvgkwedrdilkrlewtyspevekkahgwadgnkDADIDDATGANNADCIPKEDNGAWWELESSDAEAIS
Low Complexity Region (SEG)
MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLvivsddsdfvdvLQEAKYRCLKTVVVGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAHGWADGNKDADIDDATGANNADCIPKEDNGAWWELESSDAEAIS
Disordered region (IsUnstruct)
********AFSYVPQVV*******KLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQI*******************RVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAHGWA******************CI*****GAWW***********
Disordered Region (DISOPRED)
**A*ANSHAFSYVPQVVREQREERK**NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHERE****************************KYKRAARAILTPKIGYGLADELKRAGFWVRTVS*********LRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAHGWADGNKDADIDDATGANNADCIPKEDNGAWWELES*******
Disordered Region (DISEMBL)
MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAHGWADGNKDADIDDATGANNADCIPKEDNGAWWELE********
Disordered Region (DISPRO)
MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKA********DADIDDATGANNADCIPKEDNGAWWELESS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAHGWADGNKDADIDDATGANNADCIPKEDNGAWWELESSDAEAIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
255537067	375	nucleic acid binding protein, putative [	0.996	0.752	0.745	1e-122
224074705	300	predicted protein [Populus trichocarpa]	0.978	0.923	0.725	1e-120
449494370	368	PREDICTED: uncharacterized LOC101211196	0.989	0.760	0.703	1e-111
356538069	393	PREDICTED: uncharacterized protein LOC10	0.982	0.707	0.683	1e-109
449460491	367	PREDICTED: uncharacterized protein LOC10	0.985	0.760	0.699	1e-109
357462889	411	hypothetical protein MTR_3g084750 [Medic	0.964	0.664	0.691	1e-106
356569166	356	PREDICTED: uncharacterized protein LOC10	0.893	0.710	0.707	1e-102
15234485	364	C2H2 type zinc finger protein [Arabidops	0.982	0.763	0.641	1e-101
297809527	365	zinc finger family protein [Arabidopsis	0.982	0.761	0.628	1e-101
255537065	294	nucleic acid binding protein, putative [	0.837	0.806	0.747	1e-99

>gi|255537067|ref|XP_002509600.1| nucleic acid binding protein, putative [Ricinus communis] gi|223549499|gb|EEF50987.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/291 (74%), Positives = 247/291 (84%), Gaps = 9/291 (3%)

Query: 1   MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH 60
           MVAYAN HAFSYVP VV+EQR+ERKL N LE +GVIKP EPY+C VCGRRFY+NEKL+NH
Sbjct: 86  MVAYANRHAFSYVPHVVKEQRKERKLLNHLEKKGVIKPVEPYLCRVCGRRFYNNEKLINH 145

Query: 61  FKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKR 120
           FKQIHEREQ+KRLNQIESARGKRRV+LV KY+MKM+KYK AAR +LTPK+GYGLADELKR
Sbjct: 146 FKQIHEREQQKRLNQIESARGKRRVNLVAKYAMKMQKYKNAARDVLTPKVGYGLADELKR 205

Query: 121 AGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVV 180
           AGFWV TVSDKPQAADVALR H+VDMMDKR  ECLV+VSDDSDFV VL+EAK RC+KTVV
Sbjct: 206 AGFWVTTVSDKPQAADVALREHIVDMMDKRRAECLVLVSDDSDFVGVLKEAKLRCVKTVV 265

Query: 181 VGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKK-- 238
           VGDINDGALKR+ADA FSW++ILMGKAKKEAVSVVGKW+DRDILK+LEWTY+PE +KK  
Sbjct: 266 VGDINDGALKRVADAEFSWQEILMGKAKKEAVSVVGKWKDRDILKKLEWTYNPEEQKKFV 325

Query: 239 AHGWADGNKDA------DIDDATGANNADCIPKEDNGAWWELESSDAEAIS 283
            + + D N D       D D  +  N A+C+ KE  GAWWEL +S+ E IS
Sbjct: 326 VNAFNDYNGDTDEIDNGDFDGFSDENGANCMQKEAVGAWWEL-NSETELIS 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074705|ref|XP_002304433.1| predicted protein [Populus trichocarpa] gi|222841865|gb|EEE79412.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/291 (72%), Positives = 242/291 (83%), Gaps = 14/291 (4%)

Query: 1   MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH 60
           MVAYAN HAFSYVPQVVRE+R++RK  NQLEN+GVIKP E Y+C VCGR FY+NEK +NH
Sbjct: 1   MVAYANRHAFSYVPQVVREERKQRKSLNQLENKGVIKPVESYLCRVCGRNFYNNEKFINH 60

Query: 61  FKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKR 120
           FKQIHEREQ+KRLNQIESARGKRRV LVGKY+MKM+KYK AAR ILTPK+GYGLADELKR
Sbjct: 61  FKQIHEREQQKRLNQIESARGKRRVMLVGKYAMKMQKYKNAARDILTPKVGYGLADELKR 120

Query: 121 AGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVV 180
           AGFWVRTV DKPQAADVAL++HMVDMMDKR  EC V+VSDDSDFV VL+EAK RCLKTVV
Sbjct: 121 AGFWVRTVLDKPQAADVALKDHMVDMMDKRRAECFVLVSDDSDFVHVLKEAKSRCLKTVV 180

Query: 181 VGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAH 240
           VGD+NDGALKR+ADA FSW++ILMGKAKK+A +VVG+W+DRD+LKRLEWTY PEVEK  H
Sbjct: 181 VGDVNDGALKRVADAGFSWQEILMGKAKKDAETVVGRWKDRDVLKRLEWTYDPEVEKNLH 240

Query: 241 GW------------ADGN--KDADIDDATGANNADCIPKEDNGAWWELESS 277
           G              DGN  +D DID+    ++  C+ KED   WWEL+S+
Sbjct: 241 GMVYEFDNHESKDECDGNDSEDGDIDNILDGDDVGCLQKEDARGWWELDSN 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494370|ref|XP_004159528.1| PREDICTED: uncharacterized LOC101211196 [Cucumis sativus]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/283 (70%), Positives = 233/283 (82%), Gaps = 3/283 (1%)

Query: 1   MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH 60
           MVAYAN HAFSYVPQVVRE++ ERK+ NQLE +GVIK  EPY+C VCGR FY+NEKLVNH
Sbjct: 78  MVAYANRHAFSYVPQVVRERKRERKMLNQLERKGVIKSIEPYLCRVCGRNFYTNEKLVNH 137

Query: 61  FKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKR 120
           FKQIHE E KKRLNQIESA+G RRV LV KYSMK++KYK AAR +LTP++GYGLADELKR
Sbjct: 138 FKQIHESEHKKRLNQIESAKGSRRVKLVAKYSMKIQKYKNAARDVLTPEVGYGLADELKR 197

Query: 121 AGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVV 180
           AGF+V+TVSDKP+AADV LRN MV++MD+R  ECLV+VSDDSDFV+VL+EAK RCL+TVV
Sbjct: 198 AGFFVKTVSDKPEAADVELRNDMVEIMDRRKAECLVLVSDDSDFVNVLKEAKLRCLRTVV 257

Query: 181 VGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAH 240
           VGD+NDG LKR AD  FSW++ILMGKAKKEAVSVVGKW+DRD+LKRLEWTY+P +EKK  
Sbjct: 258 VGDLNDGPLKRNADTGFSWQEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPPLEKKVS 317

Query: 241 GWADGNKDADIDDATGANNADC--IPKEDNGAWWELESSDAEA 281
           G  D   + D  +    +   C  +   D GAWW+L SSDAE 
Sbjct: 318 GLDDDIGEDDDVEGGSVDGGLCENMQNNDRGAWWDL-SSDAET 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538069|ref|XP_003537527.1| PREDICTED: uncharacterized protein LOC100785257 [Glycine max]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/281 (68%), Positives = 229/281 (81%), Gaps = 3/281 (1%)

Query: 1   MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH 60
           MVAYANSH FS+VPQ VRE R+E++L  +LEN+GVIKP +PY C VCGR+FY+N+KLVNH
Sbjct: 96  MVAYANSHTFSHVPQGVRESRKEKELLYRLENKGVIKPNQPYRCKVCGRKFYTNDKLVNH 155

Query: 61  FKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKR 120
           FKQ+HE E  KR+NQIESARG RRV LV KYSMKMEKYK+AA  ILTPK+GYGLADELKR
Sbjct: 156 FKQLHESEHTKRMNQIESARGSRRVKLVAKYSMKMEKYKKAASDILTPKVGYGLADELKR 215

Query: 121 AGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVV 180
           AGFWVRTVSDKPQAAD AL++H+VD+MD R VEC+V+VSDDSDFVDV+ EAK RCLKTVV
Sbjct: 216 AGFWVRTVSDKPQAADQALQSHIVDIMDHRRVECVVLVSDDSDFVDVINEAKMRCLKTVV 275

Query: 181 VGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAH 240
           +GDI++G LKR AD +FSW +ILMGKAKK+AVSVV  W+DRDILK+LEWTY+P+ +K   
Sbjct: 276 IGDIDEGFLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRDILKKLEWTYNPDEDKSNF 335

Query: 241 GWADGNKDADIDDA---TGANNADCIPKEDNGAWWELESSD 278
              D   +A  DD    T  +  D   K+D G+WWEL+S D
Sbjct: 336 NLDDTVTEASEDDNIEDTTCDEVDDAYKDDRGSWWELDSDD 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460491|ref|XP_004147979.1| PREDICTED: uncharacterized protein LOC101211196 [Cucumis sativus]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/283 (69%), Positives = 232/283 (81%), Gaps = 4/283 (1%)

Query: 1   MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH 60
           MVAYAN HAFSYVPQVVRE++ ERK+ NQLE +GVIK  EPY+C VCGR FY+NEKLVNH
Sbjct: 78  MVAYANRHAFSYVPQVVRERKRERKMLNQLERKGVIKSIEPYLCRVCGRNFYTNEKLVNH 137

Query: 61  FKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKR 120
           FKQIHE E KKRLNQIESA+G RRV LV KYSMK++KYK AAR +L P++GYGLADELKR
Sbjct: 138 FKQIHESEHKKRLNQIESAKGSRRVKLVAKYSMKIQKYKNAARDVL-PEVGYGLADELKR 196

Query: 121 AGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVV 180
           AGF+V+TVSDKP+AADV LRN MV++MD+R  ECLV+VSDDSDFV+VL+EAK RCL+TVV
Sbjct: 197 AGFFVKTVSDKPEAADVELRNDMVEIMDRRKAECLVLVSDDSDFVNVLKEAKLRCLRTVV 256

Query: 181 VGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAH 240
           VGD+NDG LKR AD  FSW++ILMGKAKKEAVSVVGKW+DRD+LKRLEWTY+P +EKK  
Sbjct: 257 VGDLNDGPLKRNADTGFSWQEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPPLEKKVS 316

Query: 241 GWADGNKDADIDDATGANNADC--IPKEDNGAWWELESSDAEA 281
           G  D   + D  +    +   C  +   D GAWW+L SSDAE 
Sbjct: 317 GLDDDIGEDDDVEGGSVDGGLCENMQNNDRGAWWDL-SSDAET 358

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462889|ref|XP_003601726.1| hypothetical protein MTR_3g084750 [Medicago truncatula] gi|355490774|gb|AES71977.1| hypothetical protein MTR_3g084750 [Medicago truncatula]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/279 (69%), Positives = 233/279 (83%), Gaps = 6/279 (2%)

Query: 1   MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH 60
           MVAYANSH FS VP +VRE+R+ER+L  +LE++GVIK  EP+VC VCGR+FY+NEKLVNH
Sbjct: 132 MVAYANSHTFSNVPHIVRERRKERELLYRLEDKGVIKRNEPHVCRVCGRKFYTNEKLVNH 191

Query: 61  FKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKR 120
           FKQ+HERE  KRLN+IESARG R+V LVG+Y+MKMEKYK+AA A+LTPK+GYGLADELKR
Sbjct: 192 FKQLHEREHAKRLNRIESARGSRKVKLVGQYAMKMEKYKKAASAVLTPKVGYGLADELKR 251

Query: 121 AGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVV 180
           AGFWV+TV D+PQAAD+AL+ HMVDMMD R VECLV+VSDDSDFVDV++EAK RCLKTVV
Sbjct: 252 AGFWVQTVLDRPQAADIALQKHMVDMMDHRRVECLVLVSDDSDFVDVIKEAKLRCLKTVV 311

Query: 181 VGDI-NDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKA 239
           +GD  +DG LKR AD +FSW +ILMGKAKKEAVSVV  W+DRDILKRLEWTY+PEV+KK 
Sbjct: 312 IGDFSSDGVLKRTADTAFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKK 371

Query: 240 HGWADGNKDADIDDATGANNADCIPKEDNGAWWELESSD 278
                 N D  + + +G ++ D   K+D G WW+L+S D
Sbjct: 372 L-----NLDDVVPETSGDDDIDDDYKDDRGPWWKLDSDD 405

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569166|ref|XP_003552776.1| PREDICTED: uncharacterized protein LOC100789840 [Glycine max]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/253 (70%), Positives = 214/253 (84%)

Query: 1   MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH 60
           M AYANSH FS+VPQ VRE R+E++L  +LEN+GVIKP +PY C VCGR+F++N+KLVNH
Sbjct: 101 MAAYANSHTFSHVPQGVREIRKEKELLYRLENKGVIKPNQPYRCKVCGRKFHTNDKLVNH 160

Query: 61  FKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKR 120
           FKQ+HERE  KR+NQIES+RG RRV LV KYSMKMEKYK+AA  ILTPK+GYGLADEL+R
Sbjct: 161 FKQLHEREHAKRMNQIESSRGSRRVKLVAKYSMKMEKYKKAASDILTPKVGYGLADELRR 220

Query: 121 AGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVV 180
           AGFWV+TVSDKPQAAD AL++H+VD+MD R VEC+V+VSDDSDFVDV+ EAK RCLKTVV
Sbjct: 221 AGFWVQTVSDKPQAADQALQSHIVDIMDHRRVECVVLVSDDSDFVDVINEAKMRCLKTVV 280

Query: 181 VGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAH 240
           +GDI+DG LKR AD +FSW +ILMGKAKK+AVSVV  W+DRDILKRLEWTY+P+ +K   
Sbjct: 281 IGDIDDGFLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRDILKRLEWTYNPDEDKNNF 340

Query: 241 GWADGNKDADIDD 253
              D   +A  DD
Sbjct: 341 SLDDAITEASEDD 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234485|ref|NP_192961.1| C2H2 type zinc finger protein [Arabidopsis thaliana] gi|5281035|emb|CAB45971.1| hypothetical proteins [Arabidopsis thaliana] gi|7267925|emb|CAB78267.1| hypothetical proteins [Arabidopsis thaliana] gi|26452877|dbj|BAC43517.1| unknown protein [Arabidopsis thaliana] gi|28973009|gb|AAO63829.1| unknown protein [Arabidopsis thaliana] gi|332657707|gb|AEE83107.1| C2H2 type zinc finger protein [Arabidopsis thaliana]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/282 (64%), Positives = 225/282 (79%), Gaps = 4/282 (1%)

Query: 1   MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH 60
           M+AYAN HAFSYVP  VREQR++RKL N+LEN+G++KP EPY CGVC RRFY+NEKL+NH
Sbjct: 76  MMAYANRHAFSYVPLEVREQRKDRKLLNKLENKGLVKPPEPYFCGVCDRRFYTNEKLINH 135

Query: 61  FKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKR 120
           FKQIHE E +KR+ QIES++G RRV LV KYSMK+EKYKRAAR +LTPK GYGLADELKR
Sbjct: 136 FKQIHETENQKRMRQIESSKGHRRVRLVAKYSMKIEKYKRAARNVLTPKEGYGLADELKR 195

Query: 121 AGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVV 180
           AGFWV+ VSDKP AAD AL+ H+V++MDKR VEC+V+VSDDSDF  +L EAK RCL+TVV
Sbjct: 196 AGFWVKMVSDKPDAADKALKEHLVEVMDKREVECVVLVSDDSDFAGILWEAKERCLRTVV 255

Query: 181 VGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAH 240
           +GD N+GALKR+AD ++SW+++ MGKAKKE   VVGKW+DRD+LK+LEWTY P +EK+  
Sbjct: 256 IGDSNEGALKRVADVAYSWKEVTMGKAKKEVEKVVGKWKDRDVLKKLEWTYDPALEKERG 315

Query: 241 GWADGNKDADID-DATGANNADCIPKE--DNGAWWELESSDA 279
           G + G  D + D D    N  +  P E  D   WW++++ D 
Sbjct: 316 G-SCGVWDYEFDYDDEIENGTEVEPVEIGDGVDWWKIDTEDG 356

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809527|ref|XP_002872647.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297318484|gb|EFH48906.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/285 (62%), Positives = 226/285 (79%), Gaps = 7/285 (2%)

Query: 1   MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH 60
           M+AYAN HAFSYVP  VREQR++RKL NQLEN+G++KP EPY CGVC RRFY+NEKL+NH
Sbjct: 74  MMAYANRHAFSYVPLEVREQRKDRKLLNQLENKGLVKPPEPYFCGVCDRRFYTNEKLINH 133

Query: 61  FKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKR 120
           FKQIHE E +KR+ QIES++G +RV LV KYSMK+EKYKRAAR ILTPK GYGLADELKR
Sbjct: 134 FKQIHETENQKRMRQIESSKGHQRVRLVAKYSMKIEKYKRAARNILTPKEGYGLADELKR 193

Query: 121 AGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVV 180
           AGFWV+ VSDKP+AAD AL+ H+VDMMDKR VEC+V+VSDDSD+  +L EAK RCL+TVV
Sbjct: 194 AGFWVKMVSDKPEAADKALKEHLVDMMDKREVECVVLVSDDSDYAGILWEAKERCLRTVV 253

Query: 181 VGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAH 240
           +GD N+GALKR+AD ++SW++++MGKAKKE   VVGKW DRD+LK+LEW+Y P +EK+  
Sbjct: 254 IGDSNEGALKRVADVAYSWKEVVMGKAKKEVEKVVGKWNDRDVLKKLEWSYDPALEKERG 313

Query: 241 GWADGNKDADI------DDATGANNADCIPKEDNGAWWELESSDA 279
           G + G  D +       D+       + +   D G WW++++ D+
Sbjct: 314 G-SCGVWDYEFDCDDDDDEIANGREVESVEIGDGGDWWKIDNEDS 357

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537065|ref|XP_002509599.1| nucleic acid binding protein, putative [Ricinus communis] gi|223549498|gb|EEF50986.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  369 bits (946), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 184/246 (74%), Positives = 209/246 (84%), Gaps = 9/246 (3%)

Query: 46  VCGRRFYSNEKLVNHFKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAI 105
           VCGRRFY+NEKL+NHFKQIHEREQ+KRLNQIESARGKRRV+LV KY+MKM+KYK AAR +
Sbjct: 50  VCGRRFYNNEKLINHFKQIHEREQQKRLNQIESARGKRRVNLVAKYAMKMQKYKNAARDV 109

Query: 106 LTPKIGYGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFV 165
           LTPK+GYGLADELKRAGFWV TVSDKPQAADVALR H+VDMMDKR  ECLV+VSDDSDFV
Sbjct: 110 LTPKVGYGLADELKRAGFWVTTVSDKPQAADVALREHIVDMMDKRRAECLVLVSDDSDFV 169

Query: 166 DVLQEAKYRCLKTVVVGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILK 225
            VL+EAK RC+KTVVVGDINDGALKR+ADA FSW++ILMGKAKKEAVSVVGKW+DRDILK
Sbjct: 170 GVLKEAKLRCVKTVVVGDINDGALKRVADAEFSWQEILMGKAKKEAVSVVGKWKDRDILK 229

Query: 226 RLEWTYSPEVEKK--AHGWADGNKD------ADIDDATGANNADCIPKEDNGAWWELESS 277
           +LEWTY+PE +KK   + + D N D       D D  +  N A+C+ KE  GAWWEL +S
Sbjct: 230 KLEWTYNPEEQKKFVVNAFNDYNSDNDEIENGDFDGFSDENGANCMQKEAVGAWWEL-NS 288

Query: 278 DAEAIS 283
           D E IS
Sbjct: 289 DTEPIS 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2139119	364	AT4G12240 "AT4G12240" [Arabido	0.978	0.760	0.615	7e-93
TAIR|locus:2173038	396	AT5G52010 "AT5G52010" [Arabido	0.734	0.525	0.426	7.5e-41

TAIR|locus:2139119 AT4G12240 "AT4G12240" [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 173/281 (61%), Positives = 215/281 (76%)

Query:     1 MVAYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH 60
             M+AYAN HAFSYVP  VREQR++RKL N+LEN+G++KP EPY CGVC RRFY+NEKL+NH
Sbjct:    76 MMAYANRHAFSYVPLEVREQRKDRKLLNKLENKGLVKPPEPYFCGVCDRRFYTNEKLINH 135

Query:    61 FKQIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKR 120
             FKQIHE E +KR+ QIES++G RRV LV KYSMK+EKYKRAAR +LTPK GYGLADELKR
Sbjct:   136 FKQIHETENQKRMRQIESSKGHRRVRLVAKYSMKIEKYKRAARNVLTPKEGYGLADELKR 195

Query:   121 AGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLXXXXXXXXXXXXLQEAKYRCLKTVV 180
             AGFWV+ VSDKP AAD AL+ H+V++MDKR VEC+            L EAK RCL+TVV
Sbjct:   196 AGFWVKMVSDKPDAADKALKEHLVEVMDKREVECVVLVSDDSDFAGILWEAKERCLRTVV 255

Query:   181 VGDINDGALKRIADASFSWRDILMGKAKKEAVSVVGKWEDRDILKRLEWTYSPEVEKKAH 240
             +GD N+GALKR+AD ++SW+++ MGKAKKE   VVGKW+DRD+LK+LEWTY P +EK+  
Sbjct:   256 IGDSNEGALKRVADVAYSWKEVTMGKAKKEVEKVVGKWKDRDVLKKLEWTYDPALEKE-R 314

Query:   241 GWADGNKDADID-DATGANNADCIPKE--DNGAWWELESSD 278
             G + G  D + D D    N  +  P E  D   WW++++ D
Sbjct:   315 GGSCGVWDYEFDYDDEIENGTEVEPVEIGDGVDWWKIDTED 355

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2173038 AT5G52010 "AT5G52010" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 90/211 (42%), Positives = 133/211 (63%)

Query:     3 AYANSHAFSYVPQVVREQREERKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFK 62
             AYAN HAF ++P  V E+R ER+  + +E +G + P +PY+CGVCGR+  +N  L  HFK
Sbjct:   113 AYANRHAFIHLPHWVVEERRERRNLDFMERKGEVTPIDPYICGVCGRKCKTNLDLKKHFK 172

Query:    63 QIHEREQKKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKRAG 122
             Q+HERE++K++N++ S +GK+R     +Y    EKY  AAR++LTPK+GYGL  EL+RAG
Sbjct:   173 QLHERERQKKVNRMRSLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYGLEAELRRAG 232

Query:   123 FWVRTVSDKPQAADVALRNHMVDMMDKRHVECLXXXXXXXXXXXXLQEAKYRCLKTVVVG 182
              +V+TV DKPQAAD A++  +   M  R ++ L            L++A+   L T+VV 
Sbjct:   233 VYVKTVEDKPQAADWAVKRQIQHSMT-RGIDWLVLVSDDKDFSDMLRKAREADLGTLVVS 291

Query:   183 DINDGALKRIADASFSWRDILMGK-AKKEAV 212
             D+ D AL R AD    W  +  G+  +K+ +
Sbjct:   292 DM-DRALGRHADLWVPWSGVEKGEIGEKDLI 321


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       271   0.00098  114 3  11 22  0.50    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  218 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.63u 0.10s 26.73t   Elapsed:  00:00:01
  Total cpu time:  26.63u 0.10s 26.73t   Elapsed:  00:00:01
  Start:  Mon May 20 22:15:59 2013   End:  Mon May 20 22:16:00 2013

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
cd06167	151	cd06167, LabA_like, LabA_like proteins	1e-14
pfam01936	141	pfam01936, NYN, NYN domain	6e-08
COG1432	181	COG1432, COG1432, Uncharacterized conserved protei	0.002

>gnl|CDD|199895 cd06167, LabA_like, LabA_like proteins

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 16/151 (10%)

Query: 59  NHFKQIHEREQKKRLNQ---IESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLA 115
           N +  +      KRL+    +E         LV               A   P       
Sbjct: 9   NLYIGLKRLLGLKRLDLEALLERLLSYADGRLV-------LARAYYNTARPDPSSPDRFQ 61

Query: 116 DELKRAGFWVRTVSD-----KPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQE 170
           + L+R GF V  V       + +  DVAL    +++  +R ++ +V+VS DSDFV +L+ 
Sbjct: 62  EALRRLGFEVIRVPRLRGKGEEKGVDVALALDALELAYERRIDTIVLVSGDSDFVPLLER 121

Query: 171 AKYRCLKTVVVGDINDGALKRIADASFSWRD 201
            + R  + +VVG     A   + +A+  + D
Sbjct: 122 LRERGKRVIVVGF-RRSASSALKNAADEFID 151

A well conserved group of domains found in all three kingdoms of life, with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression. Another member is the N-terminal domain of limkain b1, a human autoantigen associated with cytoplasmic vesicles. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls in the LabA_like family. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 151

>gnl|CDD|216797 pfam01936, NYN, NYN domain

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 113 GLADELKRAGFWVRTVSDKPQ----AADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVL 168
              D L   G  V+           A DV L    +++    + +  V+VS D DF  +L
Sbjct: 48  KFPDALSSTGIPVQHKPLTKGSGKNAVDVGLAVDALELAYDNNPDTFVLVSGDGDFAPLL 107

Query: 169 QEAKYRCLKTVVVG 182
           +  + R  +  V+G
Sbjct: 108 ERLRERGKRVNVLG 121

These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1, YacP nucleases; NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases, namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion, unlike the FLAP/5' --> 3' exonuclease superfamily, which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs. Length = 141

>gnl|CDD|224349 COG1432, COG1432, Uncharacterized conserved protein [Function unknown]

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 136 DVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVG--DINDGALKRIA 193
           DV L    +++ DK++V+ +V+ S D DF+ +++ A+ +  +  V G   +    L+  A
Sbjct: 95  DVELAVDAMELADKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEPMTSSDLRNAA 154

Query: 194 D 194
           D
Sbjct: 155 D 155

Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
cd06167	149	LabA_like LabA_like proteins. A well conserved gro	98.79
PF01936	146	NYN: NYN domain; InterPro: IPR021139 This highly c	98.72
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	98.48
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	98.43
TIGR00288	160	conserved hypothetical protein TIGR00288. This fam	98.25
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	97.97
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.82
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	97.56
COG1432	181	Uncharacterized conserved protein [Function unknow	97.26
PHA00616	44	hypothetical protein	97.08
KOG3576	267	consensus Ovo and related transcription factors [T	97.04
PHA00733	128	hypothetical protein	96.94
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	96.93
PHA02768	55	hypothetical protein; Provisional	96.89
KOG3576	267	consensus Ovo and related transcription factors [T	96.69
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	96.54
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.12
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.5
PHA00732	79	hypothetical protein	95.34
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.99
cd05013	139	SIS_RpiR RpiR-like protein. RpiR contains a SIS (S	94.74
cd05014	128	SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5	94.69
smart00355	26	ZnF_C2H2 zinc finger.	94.12
PHA02768	55	hypothetical protein; Provisional	94.09
PRK15482	285	transcriptional regulator MurR; Provisional	93.47
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	93.19
PF01380	131	SIS: SIS domain SIS domain web page.; InterPro: IP	92.5
TIGR00441	154	gmhA phosphoheptose isomerase. Involved in lipopol	92.42
cd05008	126	SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea	91.82
cd05005	179	SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI	91.51
KOG3608	467	consensus Zn finger proteins [General function pre	91.37
PRK11557	278	putative DNA-binding transcriptional regulator; Pr	91.36
cd05710	120	SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo	91.0
cd01545	270	PBP1_SalR Ligand-binding domain of DNA transcripti	90.99
TIGR03127	179	RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of	90.83
PRK00414	192	gmhA phosphoheptose isomerase; Reviewed	90.61
PRK11337	292	DNA-binding transcriptional repressor RpiR; Provis	90.51
PRK13937	188	phosphoheptose isomerase; Provisional	90.48
cd05006	177	SIS_GmhA Phosphoheptose isomerase is a member of t	90.01
cd06295	275	PBP1_CelR Ligand binding domain of a transcription	89.84
PHA00733	128	hypothetical protein	89.82
PF04123	344	DUF373: Domain of unknown function (DUF373); Inter	88.92
cd06312	271	PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi	88.85
cd06282	266	PBP1_GntR_like_2 Ligand-binding domain of putative	88.65
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	88.39
PRK13936	197	phosphoheptose isomerase; Provisional	88.29
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	87.92
COG1737	281	RpiR Transcriptional regulators [Transcription]	87.78
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	87.37
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	87.25
cd06281	269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	86.91
cd01542	259	PBP1_TreR_like Ligand-binding domain of DNA transc	86.45
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	86.16
PRK11302	284	DNA-binding transcriptional regulator HexR; Provis	85.62
cd06324	305	PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b	85.47
cd06294	270	PBP1_ycjW_transcription_regulator_like Ligand-bind	85.21
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	85.09
PLN03086	567	PRLI-interacting factor K; Provisional	85.06
KOG3608	467	consensus Zn finger proteins [General function pre	84.99
PRK13938	196	phosphoheptose isomerase; Provisional	84.91
cd06318	282	PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi	84.86
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	84.61
TIGR02634	302	xylF D-xylose ABC transporter, substrate-binding p	84.46
cd06306	268	PBP1_TorT-like TorT-like proteins, a periplasmic b	84.1
cd01540	289	PBP1_arabinose_binding Periplasmic L-arabinose-bin	83.69
PRK15408	336	autoinducer 2-binding protein lsrB; Provisional	83.67
cd06303	280	PBP1_LuxPQ_Quorum_Sensing Periplasmic binding prot	82.38
PRK02947	246	hypothetical protein; Provisional	81.97
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	81.73
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	81.63
cd06271	268	PBP1_AglR_RafR_like Ligand-binding domain of DNA t	81.31
cd06289	268	PBP1_MalI_like Ligand-binding domain of MalI, a tr	81.28
cd06313	272	PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi	81.17
cd06302	298	PBP1_LsrB_Quorum_Sensing Periplasmic binding domai	80.98
PLN03086	567	PRLI-interacting factor K; Provisional	80.89
TIGR00274	291	N-acetylmuramic acid 6-phosphate etherase. This pr	80.65
PRK14101	638	bifunctional glucokinase/RpiR family transcription	80.61
cd01541	273	PBP1_AraR Ligand-binding domain of DNA transcripti	80.49
cd06322	267	PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b	80.45
PRK12342	254	hypothetical protein; Provisional	80.37
cd06270	268	PBP1_GalS_like Ligand binding domain of DNA transc	80.28

>cd06167 LabA_like LabA_like proteins

Probab=98.79  E-value=1.6e-08  Score=83.78  Aligned_cols=83  Identities=31%  Similarity=0.447  Sum_probs=70.7

Q ss_pred             CchhhhhhhcCeeeeecCC-----CchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC--
Q 023366          112 YGLADELKRAGFWVRTVSD-----KPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI--  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~d-----kp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~--  184 (283)
                      -.+...|++.||.|..+..     .+.++|.+|.-.|.+.+...+++++||||.|+||+++++.+|++|.+.+|+|-.  
T Consensus        55 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~  134 (149)
T cd06167          55 RGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAK  134 (149)
T ss_pred             HHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCcc
Confidence            4566788899999998884     567999999999998887889999999999999999999999999999999874  


Q ss_pred             CCcccccccc
Q 023366          185 NDGALKRIAD  194 (283)
Q Consensus       185 ~~~~l~r~ad  194 (283)
                      ....|.+.||
T Consensus       135 ~s~~L~~~~d  144 (149)
T cd06167         135 TSRELRKAAD  144 (149)
T ss_pred             ChHHHHHhCC
Confidence            2244555566

A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.

>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function

Probab=98.72  E-value=2.8e-08  Score=81.10  Aligned_cols=84  Identities=30%  Similarity=0.451  Sum_probs=55.7

Q ss_pred             hhhhhhhcCeeeeecCC------CchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEcc--CC
Q 023366          114 LADELKRAGFWVRTVSD------KPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGD--IN  185 (283)
Q Consensus       114 la~~L~RaG~~V~~v~d------kp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~--~~  185 (283)
                      +...|++.|+.|..++.      ...++|.+|.-.|...+....++.+||||.|+||+++++.+|++|.+++|||.  ..
T Consensus        52 ~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~~~~~  131 (146)
T PF01936_consen   52 FQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRERGKRVIVVGAEDSA  131 (146)
T ss_dssp             HHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH--EEEEEE-GGGS
T ss_pred             HHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHcCCEEEEEEeCCCC
Confidence            44667889999987765      56799999999998888666789999999999999999999999999999993  33


Q ss_pred             Cccccccccccc
Q 023366          186 DGALKRIADASF  197 (283)
Q Consensus       186 ~~~l~r~ad~~~  197 (283)
                      ...|.+.||-.+
T Consensus       132 s~~L~~~ad~f~  143 (146)
T PF01936_consen  132 SEALRSAADEFI  143 (146)
T ss_dssp             -HHHHHHSSEEE
T ss_pred             CHHHHHhcCEEE
Confidence            456666677554

However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=98.48  E-value=6.4e-08  Score=90.78  Aligned_cols=58  Identities=24%  Similarity=0.370  Sum_probs=51.3

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      |.++|+  -|++|.+|||.|+.+--|+-|+ ++||||||       |.|...++|+-|+++|...|..
T Consensus       180 HirTH~--l~c~C~iCGKaFSRPWLLQGHi-RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~  244 (279)
T KOG2462|consen  180 HIRTHT--LPCECGICGKAFSRPWLLQGHI-RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKH  244 (279)
T ss_pred             HhhccC--CCcccccccccccchHHhhccc-ccccCCCCccCCcccchhcchHHHHHHHHhhcCCccc
Confidence            677777  7899999999999999999999 99999996       7778889999999999886654

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=98.43  E-value=7.4e-08  Score=90.35  Aligned_cols=52  Identities=21%  Similarity=0.378  Sum_probs=44.5

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhh
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKR   83 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hr   83 (283)
                      -|.|+|||||||.|..|+|+|..+++|+.|+ ++|.+-|.       |.|++.+-|..|.
T Consensus       205 GHiRTHTGEKPF~C~hC~kAFADRSNLRAHm-QTHS~~K~~qC~~C~KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  205 GHIRTHTGEKPFSCPHCGKAFADRSNLRAHM-QTHSDVKKHQCPRCGKSFALKSYLNKHS  263 (279)
T ss_pred             cccccccCCCCccCCcccchhcchHHHHHHH-HhhcCCccccCcchhhHHHHHHHHHHhh
Confidence            3899999999999999999999999999999 99999885       5555556566553

>TIGR00288 conserved hypothetical protein TIGR00288

Probab=98.25  E-value=2.7e-06  Score=74.51  Aligned_cols=82  Identities=24%  Similarity=0.410  Sum_probs=66.6

Q ss_pred             chhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC--Ccccc
Q 023366          113 GLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN--DGALK  190 (283)
Q Consensus       113 gla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~--~~~l~  190 (283)
                      +|...|...||.+..+..   +.|++|-=.+++++-+..++++||||.|+||+.++..+|++|++.+|||-..  ...|.
T Consensus        70 ~l~~~l~~~Gf~pv~~kG---~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~  146 (160)
T TIGR00288        70 KLIEAVVNQGFEPIIVAG---DVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQ  146 (160)
T ss_pred             HHHHHHHHCCceEEEecC---cccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHH
Confidence            467788899999876543   9999999888888766799999999999999999999999999999999431  23455


Q ss_pred             ccccccc
Q 023366          191 RIADASF  197 (283)
Q Consensus       191 r~ad~~~  197 (283)
                      +-||-++
T Consensus       147 ~acd~FI  153 (160)
T TIGR00288       147 NSADIAI  153 (160)
T ss_pred             HhcCeEE
Confidence            5566443

This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=97.97  E-value=2.9e-06  Score=88.31  Aligned_cols=62  Identities=21%  Similarity=0.345  Sum_probs=55.5

Q ss_pred             HhhhhhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhh
Q 023366           24 RKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVH   86 (283)
Q Consensus        24 r~~l~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h   86 (283)
                      -|.-.+++|+--|+|.+||+|.+|.|+|....+|+.|. ++|.||||       |||++..+..+|+.-.
T Consensus       905 qKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHk-RLHSGEKPfQCdKClKRFSHSGSYSQHMNHR  973 (1007)
T KOG3623|consen  905 QKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHK-RLHSGEKPFQCDKCLKRFSHSGSYSQHMNHR  973 (1007)
T ss_pred             HhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhh-hhccCCCcchhhhhhhhcccccchHhhhccc
Confidence            45557888999999999999999999999999999999 99999996       8999999999997543

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.82  E-value=5.2e-06  Score=51.71  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=22.2

Q ss_pred             hhhhhcccCCCCCccCCCCCCccCC
Q 023366           29 QLENRGVIKPAEPYVCGVCGRRFYS   53 (283)
Q Consensus        29 ~LEhqriHTGEKPykC~vCGKsFss   53 (283)
                      +..|+++|++++||.|+.|++.|.+
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            4568999999999999999999964

...

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=97.56  E-value=2.2e-05  Score=82.79  Aligned_cols=59  Identities=24%  Similarity=0.532  Sum_probs=49.0

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc--------------ccccCchhhhhhhhhhhhhhh
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK--------------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~--------------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      |-|+||||+||+|.+||++|.++.+|+.|+ .+|....+              +.|..--.+-+|-|+|++...
T Consensus       624 HyrtHtGERPFkCKiCgRAFtTkGNLkaH~-~vHka~p~~R~q~ScP~~~ic~~kftn~V~lpQhIriH~~~~~  696 (958)
T KOG1074|consen  624 HYRTHTGERPFKCKICGRAFTTKGNLKAHM-SVHKAKPPARVQFSCPSTFICQKKFTNAVTLPQHIRIHLGGQI  696 (958)
T ss_pred             hhhcccCcCccccccccchhccccchhhcc-cccccCccccccccCCchhhhcccccccccccceEEeecCCCC
Confidence            789999999999999999999999999999 88875542              555666667888888875444

>COG1432 Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.00055  Score=60.43  Aligned_cols=63  Identities=27%  Similarity=0.448  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC--Ccccccccccccc
Q 023366          136 DVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN--DGALKRIADASFS  198 (283)
Q Consensus       136 D~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~--~~~l~r~ad~~~s  198 (283)
                      |+-|--+|....++-.++++||||.|.||..+++.|+++|.+|+|||-.+  -..|...||-...
T Consensus        95 Dv~la~D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~~~s~~L~~~aD~~i~  159 (181)
T COG1432          95 DVELAVDAMELADKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEPMTSSDLRNAADYYID  159 (181)
T ss_pred             chhhHHHHHHhhcccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCCcCHHHHHHhhcceEE
Confidence            44444556566667799999999999999999999999999999999865  1235555664443

>PHA00616 hypothetical protein

Probab=97.08  E-value=0.00015  Score=51.16  Aligned_cols=32  Identities=25%  Similarity=0.532  Sum_probs=29.1

Q ss_pred             CccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      ||+|+.||+.|.....|..|. +.|+++++.++
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~-r~~hg~~~~~~   32 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHL-LSVHKQNKLTL   32 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHH-HHhcCCCccce
Confidence            799999999999999999999 99999887554

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=97.04  E-value=0.00017  Score=66.25  Aligned_cols=48  Identities=17%  Similarity=0.255  Sum_probs=40.1

Q ss_pred             hhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccCch
Q 023366           29 QLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQIE   77 (283)
Q Consensus        29 ~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~~~   77 (283)
                      +.+|...|+..+.|.|..||++|..-..|++|. ++|+|-+|++|+.+.
T Consensus       133 lnrh~kch~~vkr~lct~cgkgfndtfdlkrh~-rthtgvrpykc~~c~  180 (267)
T KOG3576|consen  133 LNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHT-RTHTGVRPYKCSLCE  180 (267)
T ss_pred             HHHHhhhccHHHHHHHhhccCcccchhhhhhhh-ccccCccccchhhhh
Confidence            345788899889999999999999999999999 999999986665543

>PHA00733 hypothetical protein

Probab=96.94  E-value=0.001  Score=55.97  Aligned_cols=49  Identities=27%  Similarity=0.445  Sum_probs=39.8

Q ss_pred             CCCCCccCCCCCCccCCchhHhhhhhccccccc-----cccccCchhhhhhhhhh
Q 023366           37 KPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ-----KKRLNQIESARGKRRVH   86 (283)
Q Consensus        37 TGEKPykC~vCGKsFss~ssLkrH~KriHtGEK-----~Krf~~~~sl~~hrR~h   86 (283)
                      .+.+||.|..||+.|.+...|..|+ +.|+...     ++.|....+|..|++.+
T Consensus        69 ~~~kPy~C~~Cgk~Fss~s~L~~H~-r~h~~~~~C~~CgK~F~~~~sL~~H~~~~  122 (128)
T PHA00733         69 KAVSPYVCPLCLMPFSSSVSLKQHI-RYTEHSKVCPVCGKEFRNTDSTLDHVCKK  122 (128)
T ss_pred             CCCCCccCCCCCCcCCCHHHHHHHH-hcCCcCccCCCCCCccCCHHHHHHHHHHh
Confidence            4478999999999999999999999 7653211     57888888888887755

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=96.93  E-value=0.00024  Score=74.54  Aligned_cols=56  Identities=20%  Similarity=0.317  Sum_probs=51.2

Q ss_pred             CCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhhhh
Q 023366           37 KPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYSM   93 (283)
Q Consensus        37 TGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~~   93 (283)
                      +.+.+|.|..|.|.|...++|.+|. --|+|.+|       |.|.+..+|+.|+|.|.++|..+
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHK-YEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQ  952 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHK-YEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQ  952 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhh-hhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcch
Confidence            4567899999999999999999998 99999996       77888999999999999999884

>PHA02768 hypothetical protein; Provisional

Probab=96.89  E-value=0.00043  Score=51.00  Aligned_cols=25  Identities=24%  Similarity=0.802  Sum_probs=23.7

Q ss_pred             CccCCCCCCccCCchhHhhhhhcccc
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      .|.|+.||+.|...++|..|+ ++|+
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~-r~H~   29 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHL-RKHN   29 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHH-HhcC
Confidence            589999999999999999999 8898

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=96.69  E-value=0.00049  Score=63.23  Aligned_cols=88  Identities=23%  Similarity=0.345  Sum_probs=58.3

Q ss_pred             CCCCCccCCCCCCccCCchhHhhhhhccccccc-------cccccCchhhhhhhhhhhhhhhhhhhHHHHHHHhh--hcc
Q 023366           37 KPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYSMKMEKYKRAARA--ILT  107 (283)
Q Consensus        37 TGEKPykC~vCGKsFss~ssLkrH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~~k~~KY~~AA~~--~l~  107 (283)
                      .+...|.|.+|+|.|.-..-|++|+ +.|..-+       +|.|+..-.|++|.|+|++-++++ +....+|-.+  .|.
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~-kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpyk-c~~c~kaftqrcsle  190 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHL-KCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYK-CSLCEKAFTQRCSLE  190 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHh-hhccHHHHHHHhhccCcccchhhhhhhhccccCccccc-hhhhhHHHHhhccHH
Confidence            3445688888999888888888888 8887655       688888888888888888877763 3333343221  111


Q ss_pred             ---CCC-C--CchhhhhhhcCeeee
Q 023366          108 ---PKI-G--YGLADELKRAGFWVR  126 (283)
Q Consensus       108 ---pk~-g--ygla~~L~RaG~~V~  126 (283)
                         .|+ |  -..|..-+|+-++|.
T Consensus       191 shl~kvhgv~~~yaykerr~kl~vc  215 (267)
T KOG3576|consen  191 SHLKKVHGVQHQYAYKERRAKLYVC  215 (267)
T ss_pred             HHHHHHcCchHHHHHHHhhhheeee
Confidence               111 2  334555566666665

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=96.54  E-value=0.00077  Score=71.54  Aligned_cols=37  Identities=32%  Similarity=0.600  Sum_probs=32.5

Q ss_pred             hhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccc
Q 023366           30 LENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        30 LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtG   67 (283)
                      .-|.|.|||++||+|.+||.+|+++.+|+.|+ ..|..
T Consensus       370 qiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~-~rH~e  406 (958)
T KOG1074|consen  370 QIHLRSHTGERPFQCNVCGNRFSTKGNLKVHF-QRHRE  406 (958)
T ss_pred             hhhhhccCCCCCeeecccccccccccceeeee-eeccc
Confidence            34889999999999999999999999999999 66653

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.12  E-value=0.0015  Score=38.51  Aligned_cols=23  Identities=39%  Similarity=0.928  Sum_probs=20.7

Q ss_pred             ccCCCCCCccCCchhHhhhhhccc
Q 023366           42 YVCGVCGRRFYSNEKLVNHFKQIH   65 (283)
Q Consensus        42 ykC~vCGKsFss~ssLkrH~KriH   65 (283)
                      |.|+.|++.|.+...|..|+ +.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~-~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHM-RRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHH-HHH
T ss_pred             CCCCCCCCccCCHHHHHHHH-hHC
Confidence            68999999999999999998 544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.50  E-value=0.0058  Score=37.38  Aligned_cols=25  Identities=36%  Similarity=0.713  Sum_probs=22.7

Q ss_pred             CccCCCCCCccCCchhHhhhhhcccc
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      ||.|..|++.|.+...|..|+ +.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~-~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHK-RSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHH-CTTT
T ss_pred             CCCCCccCCccCChhHHHHHh-HHhc
Confidence            789999999999999999999 6664

>PHA00732 hypothetical protein

Probab=95.34  E-value=0.011  Score=46.13  Aligned_cols=27  Identities=22%  Similarity=0.354  Sum_probs=23.4

Q ss_pred             CccCCCCCCccCCchhHhhhhhc-ccccc
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQ-IHERE   68 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~Kr-iHtGE   68 (283)
                      ||.|..|++.|.+...|..|+ + .|++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~-r~~H~~~   28 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHA-RRNHTLT   28 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHh-hcccCCC
Confidence            689999999999999999998 6 57654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=94.99  E-value=0.0091  Score=34.50  Aligned_cols=23  Identities=35%  Similarity=0.927  Sum_probs=18.6

Q ss_pred             ccCCCCCCccCCchhHhhhhhccc
Q 023366           42 YVCGVCGRRFYSNEKLVNHFKQIH   65 (283)
Q Consensus        42 ykC~vCGKsFss~ssLkrH~KriH   65 (283)
                      |.|++|++.|.+...|..|+ ..|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~-~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHM-RTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHH-HHH
T ss_pred             CCCcCCCCcCCcHHHHHHHH-Hhh
Confidence            68999999999999999998 543

...

>cd05013 SIS_RpiR RpiR-like protein

Probab=94.74  E-value=0.18  Score=39.91  Aligned_cols=77  Identities=23%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc---chHHHHHHHHHcCCcEEEEccCCCcccc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS---DFVDVLQEAKYRCLKTVVVGDINDGALK  190 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~---~f~~~l~~ar~~~~~tvvvg~~~~~~l~  190 (283)
                      ++..|.+.|..+.++.+.-.      .......+  ..-+|++++|-..   +...+++.|+++|.++|+|++..+..+.
T Consensus        31 ~~~~l~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~  102 (139)
T cd05013          31 LAYKLLRLGKPVVLLSDPHL------QLMSAANL--TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLA  102 (139)
T ss_pred             HHHHHHHcCCceEEecCHHH------HHHHHHcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhH
Confidence            55567788888888755221      11111122  2457888888554   4777889999999999999998888899


Q ss_pred             cccccccc
Q 023366          191 RIADASFS  198 (283)
Q Consensus       191 r~ad~~~s  198 (283)
                      +.+|..|.
T Consensus       103 ~~~d~~i~  110 (139)
T cd05013         103 KLADIVLL  110 (139)
T ss_pred             HhcCEEEE
Confidence            99998764

RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.

>cd05014 SIS_Kpsf KpsF-like protein

Probab=94.69  E-value=0.054  Score=43.40  Aligned_cols=78  Identities=15%  Similarity=0.288  Sum_probs=56.2

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALK  190 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~  190 (283)
                      ++..|.+.|+.+....+..     .+...+ ..+  ..-++++++|-.   .+...+++.||++|+++|+|.+..+..|+
T Consensus        18 ~~~~l~~~g~~~~~~~~~~-----~~~~~~-~~~--~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la   89 (128)
T cd05014          18 IAATLSSTGTPAFFLHPTE-----ALHGDL-GMV--TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLA   89 (128)
T ss_pred             HHHHhhcCCCceEEcccch-----hhcccc-CcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence            4455567788888764421     111111 112  244788899854   78889999999999999999998889999


Q ss_pred             ccccccccH
Q 023366          191 RIADASFSW  199 (283)
Q Consensus       191 r~ad~~~sW  199 (283)
                      +.||..|..
T Consensus        90 ~~ad~~l~~   98 (128)
T cd05014          90 KLSDVVLDL   98 (128)
T ss_pred             hhCCEEEEC
Confidence            999988866

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.

>smart00355 ZnF_C2H2 zinc finger

Probab=94.12  E-value=0.027  Score=32.64  Aligned_cols=24  Identities=38%  Similarity=0.812  Sum_probs=21.4

Q ss_pred             ccCCCCCCccCCchhHhhhhhcccc
Q 023366           42 YVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        42 ykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      |.|..|++.|.....|..|+ +.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~-~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHM-RTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHH-HHhc
Confidence            67999999999999999999 6664

>PHA02768 hypothetical protein; Provisional

Probab=94.09  E-value=0.021  Score=42.14  Aligned_cols=30  Identities=7%  Similarity=0.070  Sum_probs=25.7

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVN   59 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkr   59 (283)
                      ++..|+++|+  +||+|..|++.|.+.+.|..
T Consensus        20 ~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~~   49 (55)
T PHA02768         20 SMITHLRKHN--TNLKLSNCKRISLRTGEYIE   49 (55)
T ss_pred             HHHHHHHhcC--CcccCCcccceecccceeEE
Confidence            5567999999  79999999999998887763

>PRK15482 transcriptional regulator MurR; Provisional

Probab=93.47  E-value=0.23  Score=45.80  Aligned_cols=96  Identities=16%  Similarity=0.304  Sum_probs=66.6

Q ss_pred             hHHHHHHHhhhccCCC----CC--------chhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC-
Q 023366           95 MEKYKRAARAILTPKI----GY--------GLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD-  161 (283)
Q Consensus        95 ~~KY~~AA~~~l~pk~----gy--------gla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd-  161 (283)
                      .+.+++++..+...+.    |.        -|...|.+.|..|....|..      +...+...+ . .-+++|++|-. 
T Consensus       122 ~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~------~~~~~~~~~-~-~~Dv~i~iS~sg  193 (285)
T PRK15482        122 YARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTH------VQATVSQAL-K-KGDVQIAISYSG  193 (285)
T ss_pred             HHHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHh------HHHHHHhcC-C-CCCEEEEEeCCC
Confidence            3466777776666653    32        23455668899888765432      222222223 2 33789999955 


Q ss_pred             --cchHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          162 --SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       162 --~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                        .+...+++.|+++|+++|.|++.....|.+.||.-|.
T Consensus       194 ~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~  232 (285)
T PRK15482        194 SKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLD  232 (285)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEE
Confidence              6677888999999999999999888889999998874

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.19  E-value=0.043  Score=40.24  Aligned_cols=34  Identities=21%  Similarity=0.521  Sum_probs=24.0

Q ss_pred             cCCCCCccCCCCCCccCCchhHhhhhhcccccccc
Q 023366           36 IKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK   70 (283)
Q Consensus        36 HTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~   70 (283)
                      +..++|..|++|+..+++..+|.+|+ .++++.||
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHl-e~~H~~k~   52 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHL-EIRHFKKP   52 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHH-HHHTTTS-
T ss_pred             hccCCCCCCCcchhhccchhhHHHHH-HHHhcccC
Confidence            45678999999999999999999999 77776654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF01380 SIS: SIS domain SIS domain web page

Probab=92.50  E-value=0.19  Score=39.86  Aligned_cols=48  Identities=21%  Similarity=0.359  Sum_probs=39.5

Q ss_pred             CccEEEEEeC---CcchHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          151 HVECLVIVSD---DSDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       151 ~v~~lvlvsd---d~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                      ..++|+++|-   ..+...+++.|+++|+++|+|.+..+..+.+.||.-|.
T Consensus        53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~  103 (131)
T PF01380_consen   53 PDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLY  103 (131)
T ss_dssp             TTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEE
T ss_pred             ccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEE
Confidence            4578888884   34567788899999999999999888899999987653

; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....

>TIGR00441 gmhA phosphoheptose isomerase

Probab=92.42  E-value=0.56  Score=39.82  Aligned_cols=83  Identities=16%  Similarity=0.262  Sum_probs=54.6

Q ss_pred             hhhhcCeeeeecCCCchhH-----HHHHHHHHHHHHh--hcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCC
Q 023366          117 ELKRAGFWVRTVSDKPQAA-----DVALRNHMVDMMD--KRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDIND  186 (283)
Q Consensus       117 ~L~RaG~~V~~v~dkp~aa-----D~al~~~~~~~~~--~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~  186 (283)
                      .+.|.|+.+..+.+.+...     |.-....+..++.  -..-+.++++|-+   .+-..+++.|+++|+++|+|.+..+
T Consensus        38 ~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~  117 (154)
T TIGR00441        38 RENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDG  117 (154)
T ss_pred             ccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3457788887766333211     1111222222221  2345788999965   5566778899999999999999888


Q ss_pred             ccccccccccccH
Q 023366          187 GALKRIADASFSW  199 (283)
Q Consensus       187 ~~l~r~ad~~~sW  199 (283)
                      ..|.+.||.-|.=
T Consensus       118 s~l~~~ad~~l~~  130 (154)
T TIGR00441       118 GKMAGLADIELRV  130 (154)
T ss_pred             CchhhhCCEEEEe
Confidence            8999999987753

Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.

>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=91.82  E-value=0.27  Score=39.20  Aligned_cols=76  Identities=20%  Similarity=0.218  Sum_probs=51.4

Q ss_pred             hhhhhhhcC-eeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccc
Q 023366          114 LADELKRAG-FWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGAL  189 (283)
Q Consensus       114 la~~L~RaG-~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l  189 (283)
                      ++..|.+.| +.+....  +.  +...  .+ ..+  ..-+.++.+|-+   .+-..+++.|+++|.++|+|.+..+..|
T Consensus        17 ~~~~l~~~~~~~~~~~~--~~--~~~~--~~-~~~--~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~l   87 (126)
T cd05008          17 AKYLLERLAGIPVEVEA--AS--EFRY--RR-PLL--DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTL   87 (126)
T ss_pred             HHHHHHHhcCCceEEEe--hh--Hhhh--cC-CCC--CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence            455666765 6776644  21  1111  11 012  345678888855   4566778899999999999999888899


Q ss_pred             ccccccccc
Q 023366          190 KRIADASFS  198 (283)
Q Consensus       190 ~r~ad~~~s  198 (283)
                      .+.||..|.
T Consensus        88 a~~ad~~l~   96 (126)
T cd05008          88 AREADYVLY   96 (126)
T ss_pred             HHhCCEEEE
Confidence            999998774

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI)

Probab=91.51  E-value=0.28  Score=42.22  Aligned_cols=73  Identities=23%  Similarity=0.282  Sum_probs=55.6

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALK  190 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~  190 (283)
                      ++..|.+.|..+..+.+.-           ...+  ..-++++.+|-.   .+...+++.|+++|+++|+|.+.....|.
T Consensus        51 ~~~~l~~~g~~~~~~~~~~-----------~~~~--~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la  117 (179)
T cd05005          51 FAMRLMHLGLNVYVVGETT-----------TPAI--GPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLA  117 (179)
T ss_pred             HHHHHHhCCCeEEEeCCCC-----------CCCC--CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence            3445678899988876521           0112  356788888855   67778899999999999999998888999


Q ss_pred             ccccccccH
Q 023366          191 RIADASFSW  199 (283)
Q Consensus       191 r~ad~~~sW  199 (283)
                      +.||..|.-
T Consensus       118 ~~ad~~l~~  126 (179)
T cd05005         118 KLADVVVVI  126 (179)
T ss_pred             HhCCEEEEe
Confidence            999998754

PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=91.37  E-value=0.064  Score=52.96  Aligned_cols=102  Identities=21%  Similarity=0.259  Sum_probs=71.5

Q ss_pred             hhhhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccc-cc--------cccccCchhhhhhhhhhhhhhhhhhhH
Q 023366           26 LFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHER-EQ--------KKRLNQIESARGKRRVHLVGKYSMKME   96 (283)
Q Consensus        26 ~l~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtG-EK--------~Krf~~~~sl~~hrR~h~~~k~~~k~~   96 (283)
                      .+.+.||.++|+++|-..|+.||.-|++++.|-.|. +-.+. .+        .|+|..-+.|+.|.+.|..-       
T Consensus       192 k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~-rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~-------  263 (467)
T KOG3608|consen  192 KYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHL-RRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNC-------  263 (467)
T ss_pred             HHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHH-HhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhc-------
Confidence            456778999999999999999999999999999998 33332 22        37787777888887777321       


Q ss_pred             HHHHHHhhhccCC--CCCchhhhhhhcCeeeeecCCCchhHH---------HHHHHHHH
Q 023366           97 KYKRAARAILTPK--IGYGLADELKRAGFWVRTVSDKPQAAD---------VALRNHMV  144 (283)
Q Consensus        97 KY~~AA~~~l~pk--~gygla~~L~RaG~~V~~v~dkp~aaD---------~al~~~~~  144 (283)
                              .-+|-  .+.|+++.|++.=. .+--.|||.+-|         .-|.+|++
T Consensus       264 --------ykCplCdmtc~~~ssL~~H~r-~rHs~dkpfKCd~Cd~~c~~esdL~kH~~  313 (467)
T KOG3608|consen  264 --------YKCPLCDMTCSSASSLTTHIR-YRHSKDKPFKCDECDTRCVRESDLAKHVQ  313 (467)
T ss_pred             --------ccccccccCCCChHHHHHHHH-hhhccCCCccccchhhhhccHHHHHHHHH
Confidence                    23343  36888999976532 334458887544         45666653

>PRK11557 putative DNA-binding transcriptional regulator; Provisional

Probab=91.36  E-value=0.65  Score=42.50  Aligned_cols=96  Identities=18%  Similarity=0.161  Sum_probs=65.0

Q ss_pred             hHHHHHHHhhhccCCC----CCc--------hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC-
Q 023366           95 MEKYKRAARAILTPKI----GYG--------LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD-  161 (283)
Q Consensus        95 ~~KY~~AA~~~l~pk~----gyg--------la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd-  161 (283)
                      ..+..+++..+...+.    |.|        |...|.+.|+.+-...|.-.      .......|  ..-++|+.+|=. 
T Consensus       115 ~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~------~~~~~~~~--~~~Dv~I~iS~sg  186 (278)
T PRK11557        115 EEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHA------LLATVQAL--SPDDLLLAISYSG  186 (278)
T ss_pred             HHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHH------HHHHHHhC--CCCCEEEEEcCCC
Confidence            3566777776666663    433        34456789998877544211      11111223  245577788754 


Q ss_pred             --cchHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          162 --SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       162 --~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                        .+...+++.|+++|+++|+|++.....+.+.||.-|.
T Consensus       187 ~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~  225 (278)
T PRK11557        187 ERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLY  225 (278)
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEE
Confidence              4455788999999999999999888899999998883

>cd05710 SIS_1 A subgroup of the SIS domain

Probab=91.00  E-value=0.39  Score=38.98  Aligned_cols=47  Identities=19%  Similarity=0.234  Sum_probs=40.1

Q ss_pred             ccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          152 VECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       152 v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                      -+.++.+|-+   .+-..+++.|+++|+++|+|.+..+..|.+.||..|.
T Consensus        48 ~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~   97 (120)
T cd05710          48 KSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIV   97 (120)
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEE
Confidence            4788888865   5677888899999999999999888899999998774

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.

>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators

Probab=90.99  E-value=0.79  Score=39.98  Aligned_cols=71  Identities=13%  Similarity=0.170  Sum_probs=52.6

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+...++..|+.+.++......  ......+.+.+...+++-|++++.+.....+++.+++.++..|+|+..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~   89 (270)
T cd01545          19 LGALDACRDTGYQLVIEPCDSGS--PDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPG   89 (270)
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCc--hHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecC
Confidence            57778888899998776433221  125555666565789999999987655678899999999999999753

Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind

>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase

Probab=90.83  E-value=0.37  Score=41.28  Aligned_cols=71  Identities=21%  Similarity=0.281  Sum_probs=53.6

Q ss_pred             hhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccccc
Q 023366          115 ADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKR  191 (283)
Q Consensus       115 a~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r  191 (283)
                      +..|.+.|..+..+.+.-           ...+  ..-+++|++|-.   .+...+++.|+++|+++|+|.+.....|.+
T Consensus        49 ~~~l~~~g~~~~~~~~~~-----------~~~~--~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~  115 (179)
T TIGR03127        49 AMRLMHLGFNVYVVGETT-----------TPSI--KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGK  115 (179)
T ss_pred             HHHHHhCCCeEEEeCCcc-----------cCCC--CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence            344667899888876531           0112  245788888865   567788889999999999999988889999


Q ss_pred             ccccccc
Q 023366          192 IADASFS  198 (283)
Q Consensus       192 ~ad~~~s  198 (283)
                      .||.-|.
T Consensus       116 ~ad~~l~  122 (179)
T TIGR03127       116 LADVVVE  122 (179)
T ss_pred             hCCEEEE
Confidence            9998773

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.

>PRK00414 gmhA phosphoheptose isomerase; Reviewed

Probab=90.61  E-value=1  Score=39.86  Aligned_cols=79  Identities=16%  Similarity=0.335  Sum_probs=53.9

Q ss_pred             hhcCeeeeecCCCchh----HHHHHHHHHHHHHh--hcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccc
Q 023366          119 KRAGFWVRTVSDKPQA----ADVALRNHMVDMMD--KRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGAL  189 (283)
Q Consensus       119 ~RaG~~V~~v~dkp~a----aD~al~~~~~~~~~--~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l  189 (283)
                      .|.|+.+....|..--    .|.-...++..+..  ...-+.++.+|-+   .+-..+++.|+++|++||+|....+..|
T Consensus        73 ~r~g~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l  152 (192)
T PRK00414         73 NRPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVEAVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKM  152 (192)
T ss_pred             CCCCceEEecCcHHHHhhhhccCCHHHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence            4778888776542111    11112222222222  2456788889965   6677889999999999999999888899


Q ss_pred             cccccccc
Q 023366          190 KRIADASF  197 (283)
Q Consensus       190 ~r~ad~~~  197 (283)
                      ++.||.-+
T Consensus       153 ~~~ad~~l  160 (192)
T PRK00414        153 AGLADIEI  160 (192)
T ss_pred             HHhCCEEE
Confidence            99999877

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional

Probab=90.51  E-value=0.85  Score=42.12  Aligned_cols=95  Identities=19%  Similarity=0.341  Sum_probs=65.6

Q ss_pred             HHHHHHHhhhccCCC----CCc--------hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC--
Q 023366           96 EKYKRAARAILTPKI----GYG--------LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD--  161 (283)
Q Consensus        96 ~KY~~AA~~~l~pk~----gyg--------la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd--  161 (283)
                      +...+++..+...+.    |.|        |+..|.|.|+.+..+.|...      .......+  ..-++||++|-.  
T Consensus       128 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~------~~~~~~~~--~~~Dl~I~iS~sG~  199 (292)
T PRK11337        128 DEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHI------MLMSAALL--QEGDVVLVVSHSGR  199 (292)
T ss_pred             HHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHH------HHHHHhcC--CCCCEEEEEeCCCC
Confidence            556666666666553    333        34556788998887655321      11111112  345677888864  


Q ss_pred             -cchHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          162 -SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       162 -~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                       .+...+++.|+++|+++|+|++..+..|.+.||.-|.
T Consensus       200 t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~  237 (292)
T PRK11337        200 TSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVIC  237 (292)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence             5688889999999999999999888899999999874

>PRK13937 phosphoheptose isomerase; Provisional

Probab=90.48  E-value=1.3  Score=38.83  Aligned_cols=49  Identities=18%  Similarity=0.276  Sum_probs=41.4

Q ss_pred             CccEEEEEeC---CcchHHHHHHHHHcCCcEEEEccCCCccccccccccccH
Q 023366          151 HVECLVIVSD---DSDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSW  199 (283)
Q Consensus       151 ~v~~lvlvsd---d~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~sW  199 (283)
                      .-+.++++|-   ..+-..+++.|+++|++||+|.+..+..|.+.||..+.-
T Consensus       106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~  157 (188)
T PRK13937        106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV  157 (188)
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence            4478888884   467778899999999999999998788899999988754

>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily

Probab=90.01  E-value=0.5  Score=40.58  Aligned_cols=50  Identities=24%  Similarity=0.339  Sum_probs=41.5

Q ss_pred             CccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccccccccccccHH
Q 023366          151 HVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSWR  200 (283)
Q Consensus       151 ~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~sW~  200 (283)
                      .-+.+|++|-.   .+-..+++.|+++|++||.|.+.++..|.+.||..|.-.
T Consensus       101 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~  153 (177)
T cd05006         101 PGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP  153 (177)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence            45678888843   467788899999999999999988889999999988654

Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).

>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators

Probab=89.84  E-value=1.4  Score=38.87  Aligned_cols=66  Identities=17%  Similarity=0.249  Sum_probs=48.4

Q ss_pred             chhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC
Q 023366          113 GLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       113 gla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      |+..+++..|+.+..+...++  +   ...+.+++.+.+++.|++++.+.+ ..+++.+.++|+..|++|-.
T Consensus        31 gi~~~~~~~g~~~~v~~~~~~--~---~~~~~~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~   96 (275)
T cd06295          31 GIADALAERGYDLLLSFVSSP--D---RDWLARYLASGRADGVILIGQHDQ-DPLPERLAETGLPFVVWGRP   96 (275)
T ss_pred             HHHHHHHHcCCEEEEEeCCch--h---HHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhCCCCEEEECCc
Confidence            556777788999887655444  1   234455665689999999876544 57789999999999999754

This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang

>PHA00733 hypothetical protein

Probab=89.82  E-value=0.24  Score=41.72  Aligned_cols=32  Identities=22%  Similarity=0.513  Sum_probs=25.7

Q ss_pred             hhhhcccCCCCCccCCCCCCccCCchhHhhhhhc
Q 023366           30 LENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQ   63 (283)
Q Consensus        30 LEhqriHTGEKPykC~vCGKsFss~ssLkrH~Kr   63 (283)
                      ..|+++|  +.+|.|.+|++.|.....|..|+.+
T Consensus        90 ~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~  121 (128)
T PHA00733         90 KQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCK  121 (128)
T ss_pred             HHHHhcC--CcCccCCCCCCccCCHHHHHHHHHH
Confidence            3455555  3689999999999999999999833

>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions

Probab=88.92  E-value=1.8  Score=42.41  Aligned_cols=91  Identities=27%  Similarity=0.313  Sum_probs=69.6

Q ss_pred             hhhhhHHHHHHHhh--hccCCCC--------CchhhhhhhcC--eeeeecCCCch---hHHHHHHHHHHHHHhhcCccEE
Q 023366           91 YSMKMEKYKRAARA--ILTPKIG--------YGLADELKRAG--FWVRTVSDKPQ---AADVALRNHMVDMMDKRHVECL  155 (283)
Q Consensus        91 ~~~k~~KY~~AA~~--~l~pk~g--------ygla~~L~RaG--~~V~~v~dkp~---aaD~al~~~~~~~~~~~~v~~l  155 (283)
                      +.-+.+...+||.+  +..|...        ..+..+|++.|  +.|-+|+.-|.   .||.++.+++.++++..+.+-.
T Consensus        23 PVvGre~vl~AA~~l~laDPeDSD~N~if~avkiydeL~~~GedveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~~~  102 (344)
T PF04123_consen   23 PVVGREAVLDAAVKLALADPEDSDVNAIFGAVKIYDELKAEGEDVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPDSA  102 (344)
T ss_pred             CcccHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCCEE
Confidence            33455666677665  4555543        67889999888  55567877776   8999999999999999999999


Q ss_pred             EEEeCCcchHHHHHHHHH----cCCcEEEE
Q 023366          156 VIVSDDSDFVDVLQEAKY----RCLKTVVV  181 (283)
Q Consensus       156 vlvsdd~~f~~~l~~ar~----~~~~tvvv  181 (283)
                      ++|||..+=.-++---+.    .+|+.|||
T Consensus       103 i~VsDGaeDE~vlPiIqSr~~V~sV~RVVV  132 (344)
T PF04123_consen  103 IVVSDGAEDERVLPIIQSRVPVDSVKRVVV  132 (344)
T ss_pred             EEEecChhhhhhhHhhhccCceEEEEEEEE
Confidence            999998776655554444    58899998

>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=88.85  E-value=1.6  Score=38.57  Aligned_cols=70  Identities=17%  Similarity=0.177  Sum_probs=49.6

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHH-HHHHHHHHHhhcCccEEEEEeCCcc-hHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVA-LRNHMVDMMDKRHVECLVIVSDDSD-FVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~a-l~~~~~~~~~~~~v~~lvlvsdd~~-f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+...++..|+.|.......  .|.. ....|..++ ..+++-||+++.+.+ +.++|+.++++|+..|+++..
T Consensus        20 ~g~~~~~~~~g~~v~~~~~~~--~~~~~~~~~i~~l~-~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~   91 (271)
T cd06312          20 NGAEDAAKDLGVDVEYRGPET--FDVADMARLIEAAI-AAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAG   91 (271)
T ss_pred             HHHHHHHHHhCCEEEEECCCC--CCHHHHHHHHHHHH-HhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCC
Confidence            466777778899998765432  1122 223333345 779999999987654 678899999999999999754

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=88.65  E-value=2.2  Score=36.95  Aligned_cols=70  Identities=14%  Similarity=0.215  Sum_probs=49.5

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+...++..|+.+.......+..+  ..+.+..++ ..+++.||+.+.+.+..++++.++++|+..|+++..
T Consensus        19 ~~i~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~l~-~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~   88 (266)
T cd06282          19 QGIQEEARAAGYSLLLATTDYDAER--EADAVETLL-RQRVDGLILTVADAATSPALDLLDAERVPYVLAYND   88 (266)
T ss_pred             HHHHHHHHHCCCEEEEeeCCCCHHH--HHHHHHHHH-hcCCCEEEEecCCCCchHHHHHHhhCCCCEEEEecc
Confidence            3666677788999887655433221  123333345 789999999887766567899999999999999764

This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=88.39  E-value=0.17  Score=30.21  Aligned_cols=20  Identities=30%  Similarity=0.883  Sum_probs=19.0

Q ss_pred             ccCCCCCCccCCchhHhhhh
Q 023366           42 YVCGVCGRRFYSNEKLVNHF   61 (283)
Q Consensus        42 ykC~vCGKsFss~ssLkrH~   61 (283)
                      |.|..|.+.|.+...+..|.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~   20 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHL   20 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHH
Confidence            67999999999999999998

>PRK13936 phosphoheptose isomerase; Provisional

Probab=88.29  E-value=1.8  Score=38.45  Aligned_cols=50  Identities=16%  Similarity=0.319  Sum_probs=41.0

Q ss_pred             cCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccccc---ccccccH
Q 023366          150 RHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRI---ADASFSW  199 (283)
Q Consensus       150 ~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~---ad~~~sW  199 (283)
                      ..-|+++++|-+   .+-..+++.|+++|+++|.|++..+..|++.   ||..|.=
T Consensus       110 ~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v  165 (197)
T PRK13936        110 QPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRV  165 (197)
T ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEe
Confidence            355899999965   6677889999999999999999777788885   8877743

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=87.92  E-value=2.1  Score=37.44  Aligned_cols=92  Identities=17%  Similarity=0.181  Sum_probs=60.7

Q ss_pred             CchhhhhhhcCeeeeec-CCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC-cchHHHHHHHHHcCCcEEEEccCCCccc
Q 023366          112 YGLADELKRAGFWVRTV-SDKPQAADVALRNHMVDMMDKRHVECLVIVSDD-SDFVDVLQEAKYRCLKTVVVGDINDGAL  189 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v-~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd-~~f~~~l~~ar~~~~~tvvvg~~~~~~l  189 (283)
                      -|+...++..|+.+..+ ......  ......+..++ +.|++.|++..-+ ....++|+.|++.|+..|.+...  ...
T Consensus        18 ~g~~~~a~~~g~~~~~~~~~~~d~--~~q~~~i~~~i-~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~--~~~   92 (257)
T PF13407_consen   18 KGAKAAAKELGYEVEIVFDAQNDP--EEQIEQIEQAI-SQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD--EAP   92 (257)
T ss_dssp             HHHHHHHHHHTCEEEEEEESTTTH--HHHHHHHHHHH-HTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST--HHT
T ss_pred             HHHHHHHHHcCCEEEEeCCCCCCH--HHHHHHHHHHH-HhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc--ccc
Confidence            35666777889999886 333332  44556666677 8899999988554 57889999999999988888655  012


Q ss_pred             cccccccccHHHHhcchhh
Q 023366          190 KRIADASFSWRDILMGKAK  208 (283)
Q Consensus       190 ~r~ad~~~sW~~v~~g~~~  208 (283)
                      ...-...+....-..|+..
T Consensus        93 ~~~~~~~v~~d~~~~G~~~  111 (257)
T PF13407_consen   93 DSPRAAYVGTDNYEAGKLA  111 (257)
T ss_dssp             TSTSSEEEEE-HHHHHHHH
T ss_pred             cccceeeeeccHHHHHHHH
Confidence            3333444445555555443

...

>COG1737 RpiR Transcriptional regulators [Transcription]

Probab=87.78  E-value=1.6  Score=40.83  Aligned_cols=97  Identities=26%  Similarity=0.319  Sum_probs=68.8

Q ss_pred             hhHHHHHHHhhhccCCC----CCc--------hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCcc-EEEEEeC
Q 023366           94 KMEKYKRAARAILTPKI----GYG--------LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVE-CLVIVSD  160 (283)
Q Consensus        94 k~~KY~~AA~~~l~pk~----gyg--------la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~-~lvlvsd  160 (283)
                      ..+...+++..+..++.    |.|        ++..|.|-|+.|..+.|.....       |  ++...+-+ .+|.+|-
T Consensus       116 ~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~-------~--~~~~~~~~Dv~i~iS~  186 (281)
T COG1737         116 DEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQL-------M--QLALLTPGDVVIAISF  186 (281)
T ss_pred             CHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHH-------H--HHHhCCCCCEEEEEeC
Confidence            34567777777777772    333        4456679999999999876522       1  12244555 4455554


Q ss_pred             C---cchHHHHHHHHHcCCcEEEEccCCCccccccccccccH
Q 023366          161 D---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSW  199 (283)
Q Consensus       161 d---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~sW  199 (283)
                      .   .+-..+++.|+++|+++|.|.+..+-.|.+.||..|.=
T Consensus       187 sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~  228 (281)
T COG1737         187 SGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV  228 (281)
T ss_pred             CCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence            3   24556788999999999999998778899999998865

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=87.37  E-value=2.3  Score=36.76  Aligned_cols=87  Identities=14%  Similarity=0.287  Sum_probs=55.3

Q ss_pred             hhhhhhhcCeeeeecCCCchh-----HHHHHHHHHHHHHhhcCccEEEEEeCCcc-h----HHHHHHHH-HcC--C---c
Q 023366          114 LADELKRAGFWVRTVSDKPQA-----ADVALRNHMVDMMDKRHVECLVIVSDDSD-F----VDVLQEAK-YRC--L---K  177 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~a-----aD~al~~~~~~~~~~~~v~~lvlvsdd~~-f----~~~l~~ar-~~~--~---~  177 (283)
                      +-..|+..|+.+-.++++|..     .-.++...|..+|+..|+...+.++.+.. .    .+++..|. +.|  +   .
T Consensus        50 ~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~  129 (166)
T TIGR01664        50 KLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTR  129 (166)
T ss_pred             HHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchh
Confidence            345667899999999999873     23356677778888888875433332222 2    33555544 455  2   4


Q ss_pred             EEEEccCC---------CccccccccccccHH
Q 023366          178 TVVVGDIN---------DGALKRIADASFSWR  200 (283)
Q Consensus       178 tvvvg~~~---------~~~l~r~ad~~~sW~  200 (283)
                      +|+|||..         |-.-++.|-+.|=|.
T Consensus       130 ~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~~  161 (166)
T TIGR01664       130 SFYVGDAAGRKLDFSDADIKFAKNLGLEFKYP  161 (166)
T ss_pred             cEEEECCCCCCCCCchhHHHHHHHCCCCcCCh
Confidence            99999974         444555566666554

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=87.25  E-value=2.8  Score=36.65  Aligned_cols=70  Identities=14%  Similarity=0.095  Sum_probs=49.5

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcc-hHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSD-FVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~-f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..+++..|+.+..+....+   .....+..+.+...+++-||+.+.++. ..++++.+.++|+.-|+++..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~   89 (273)
T cd06305          19 AGTKAEAEALGGDLRVYDAGGD---DAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVD   89 (273)
T ss_pred             HHHHHHHHHcCCEEEEECCCCC---HHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCC
Confidence            4667778889999887654332   233333333333779999999876544 578899999999999999764

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=86.91  E-value=3  Score=36.72  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=49.5

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+..+++..|+.+-......+. + ...+.+..++ ..+++.|++++.+.+-..+++.++++++..|+++...
T Consensus        19 ~~i~~~a~~~g~~~~~~~~~~~~-~-~~~~~i~~l~-~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i~~~~   89 (269)
T cd06281          19 SGAEDRLRAAGYSLLIANSLNDP-E-RELEILRSFE-QRRMDGIIIAPGDERDPELVDALASLDLPIVLLDRDM   89 (269)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCh-H-HHHHHHHHHH-HcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEEeccc
Confidence            56778888899998765332221 1 2223333344 7899999999876665678899999999999997643

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=86.45  E-value=3.2  Score=36.02  Aligned_cols=69  Identities=13%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..++++.|+.+.........+  ..+..+..++ +.+++.||+++.+.+ ..+++.+++.|+..|++|..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~i~~l~-~~~~dgii~~~~~~~-~~~~~~~~~~~ipvv~~~~~   87 (259)
T cd01542          19 KGILAALYENGYQMLLMNTNFSIE--KEIEALELLA-RQKVDGIILLATTIT-DEHREAIKKLNVPVVVVGQD   87 (259)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCHH--HHHHHHHHHH-hcCCCEEEEeCCCCC-HHHHHHHhcCCCCEEEEecc
Confidence            577778888999998765443321  2233344445 789999999876543 57888888899999999764

Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=86.16  E-value=0.39  Score=29.54  Aligned_cols=20  Identities=30%  Similarity=0.823  Sum_probs=19.2

Q ss_pred             ccCCCCCCccCCchhHhhhh
Q 023366           42 YVCGVCGRRFYSNEKLVNHF   61 (283)
Q Consensus        42 ykC~vCGKsFss~ssLkrH~   61 (283)
                      |.|..|++.|.+...+..|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~   21 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHM   21 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCT
T ss_pred             CCcccCCCCcCCHHHHHHHH
Confidence            78999999999999999998

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK11302 DNA-binding transcriptional regulator HexR; Provisional

Probab=85.62  E-value=7  Score=35.63  Aligned_cols=95  Identities=19%  Similarity=0.276  Sum_probs=60.8

Q ss_pred             hHHHHHHHhhhccCCC----CCchhh--------hhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc
Q 023366           95 MEKYKRAARAILTPKI----GYGLAD--------ELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS  162 (283)
Q Consensus        95 ~~KY~~AA~~~l~pk~----gygla~--------~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~  162 (283)
                      .+...+++..+...+.    |.|...        .|-+-|+.+-...+      ..... +. ...-..-++|+++|-.-
T Consensus       115 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~------~~~~~-~~-~~~~~~~D~vI~iS~sG  186 (284)
T PRK11302        115 PSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFNVPVVYFDD------IVMQR-MS-CMNSSDGDVVVLISHTG  186 (284)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhcCCceEecCC------HHHHH-HH-HHhCCCCCEEEEEeCCC
Confidence            3556677776666653    433322        25577887776543      11111 11 11123446778887654


Q ss_pred             ---chHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          163 ---DFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       163 ---~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                         +...+++.|+++|+++|+|++ .+..|.+.||..|.
T Consensus       187 ~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~  224 (284)
T PRK11302        187 RTKSLVELAQLARENGATVIAITS-AGSPLAREATLALT  224 (284)
T ss_pred             CCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEe
Confidence               566678889999999999998 56889999998774

>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=85.47  E-value=3  Score=38.06  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=49.2

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhc--CccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKR--HVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~--~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..+++..|+.+-.+....+   ......+.++|.+.  +++-||+.+.+.....+++.++++|+..|+++..
T Consensus        20 ~gi~~~~~~~g~~v~~~~~~~~---~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~   91 (305)
T cd06324          20 RFMQAAADDLGIELEVLYAERD---RFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGAGVKLFLVNSG   91 (305)
T ss_pred             HHHHHHHHhcCCeEEEEeCCCC---HHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhCCCeEEEEecC
Confidence            4677778889998876643222   22222333334477  9999999876655677899999999999999753

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors

Probab=85.21  E-value=3.8  Score=35.66  Aligned_cols=69  Identities=16%  Similarity=0.314  Sum_probs=48.7

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+...++..|+.+...... .  +......+..++.+.+++.||+++.+.. ..+++.+.++|+..|+++..
T Consensus        24 ~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~   92 (270)
T cd06294          24 RGISAVANENGYDISLATGK-N--EEELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLKEEKFPFVVIGKP   92 (270)
T ss_pred             HHHHHHHHHCCCEEEEecCC-C--cHHHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHHhcCCCEEEECCC
Confidence            46667777888888654322 2  2334556666675678999999874433 57788999999999999764

This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=85.09  E-value=1.4  Score=39.70  Aligned_cols=76  Identities=11%  Similarity=0.105  Sum_probs=55.4

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHH--HhhcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDM--MDKRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGA  188 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~--~~~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~  188 (283)
                      |+..|.+.|..+..+.+          .++...  ..-..-++++.+|-+   .+-..+++.|+++|+++|.|.+.....
T Consensus        18 ~~~~l~~~g~~~~~~~~----------~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~   87 (268)
T TIGR00393        18 IVATFASTGTPSFFLHP----------TEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSS   87 (268)
T ss_pred             HHHHHHhcCCceEEeCH----------hHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCc
Confidence            55566778888876643          111111  101234688999865   667788999999999999999988888


Q ss_pred             ccccccccccH
Q 023366          189 LKRIADASFSW  199 (283)
Q Consensus       189 l~r~ad~~~sW  199 (283)
                      |++.||..|..
T Consensus        88 l~~~~d~~l~~   98 (268)
T TIGR00393        88 LARAADYVLDI   98 (268)
T ss_pred             ccccCCEEEEc
Confidence            99999999876

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PLN03086 PRLI-interacting factor K; Provisional

Probab=85.06  E-value=0.78  Score=47.72  Aligned_cols=39  Identities=23%  Similarity=0.374  Sum_probs=24.6

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +|..+|+  +|+.|+ ||+.+ .+..|..|+ ..|..+++..|.
T Consensus       470 kH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~-~thCp~Kpi~C~  508 (567)
T PLN03086        470 KHMKVFH--EPLQCP-CGVVL-EKEQMVQHQ-ASTCPLRLITCR  508 (567)
T ss_pred             HHHHhcC--CCccCC-CCCCc-chhHHHhhh-hccCCCCceeCC
Confidence            3555553  677777 77544 557777777 677777764443

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=84.99  E-value=0.38  Score=47.67  Aligned_cols=49  Identities=18%  Similarity=0.360  Sum_probs=33.2

Q ss_pred             cCCCCCccCCCCCCccCCchhHhhhhhccccccc---------cccccCchhhhhhhhhh
Q 023366           36 IKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ---------KKRLNQIESARGKRRVH   86 (283)
Q Consensus        36 HTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK---------~Krf~~~~sl~~hrR~h   86 (283)
                      |+..+||+|..|.+.|.+.+.|.+|. ..|+ +.         +.++....+++.|.+.+
T Consensus       287 Hs~dkpfKCd~Cd~~c~~esdL~kH~-~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~ev  344 (467)
T KOG3608|consen  287 HSKDKPFKCDECDTRCVRESDLAKHV-QVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEV  344 (467)
T ss_pred             hccCCCccccchhhhhccHHHHHHHH-Hhcc-ccceecCCCCCcHHHHHHHHHHHHHHHh
Confidence            56678888888888888888888888 7776 33         23334455566665533

>PRK13938 phosphoheptose isomerase; Provisional

Probab=84.91  E-value=1.1  Score=40.27  Aligned_cols=57  Identities=16%  Similarity=0.148  Sum_probs=43.8

Q ss_pred             CccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccccccccccccHHHHhcchh
Q 023366          151 HVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSWRDILMGKA  207 (283)
Q Consensus       151 ~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~sW~~v~~g~~  207 (283)
                      .-+.|+++|-+   .+-..+++.|+++|++||.|.+.++..|.+.||..|.-..-..+.+
T Consensus       113 ~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~~e~~~v  172 (196)
T PRK13938        113 PGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSRDTGRI  172 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCCCchhhH
Confidence            44678888875   3455788889999999999999888899999999886544344433

>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=84.86  E-value=4.7  Score=35.53  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=48.9

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcc-hHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSD-FVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~-f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..++++.|+.|.......+.+..  .+.+..++ ..+++.|++.+.+++ +.+.++.++++|+..|+|+..
T Consensus        19 ~~i~~~~~~~g~~v~~~~~~~~~~~~--~~~i~~~~-~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~   89 (282)
T cd06318          19 EAAKAHAKALGYELISTDAQGDLTKQ--IADVEDLL-TRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDSS   89 (282)
T ss_pred             HHHHHHHHHcCCEEEEEcCCCCHHHH--HHHHHHHH-HcCCCEEEEecCCccchHHHHHHHHHCCCCEEEecCC
Confidence            57777888899988765433332211  23333345 889999999876544 357889999999999999763

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=84.61  E-value=1.5  Score=41.17  Aligned_cols=76  Identities=13%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALK  190 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~  190 (283)
                      ++..|.+.|..+..+.+..      ........+  ..-++++.+|-.   .+-.++++.|+++|++||+|.+..+..|+
T Consensus        65 ~~~~l~~~g~~~~~~~~~~------~~~~~~~~~--~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la  136 (326)
T PRK10892         65 MAATFASTGTPSFFVHPGE------AAHGDLGMV--TPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMA  136 (326)
T ss_pred             HHHHHhcCCceeEEeChHH------hhccccccC--CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCccc
Confidence            4556668898887753321      111011122  234688999965   77888999999999999999999889999


Q ss_pred             ccccccc
Q 023366          191 RIADASF  197 (283)
Q Consensus       191 r~ad~~~  197 (283)
                      +.||..|
T Consensus       137 ~~ad~~l  143 (326)
T PRK10892        137 RAADIHL  143 (326)
T ss_pred             ccCCEEE
Confidence            9999988

>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein

Probab=84.46  E-value=4.3  Score=37.19  Aligned_cols=69  Identities=22%  Similarity=0.239  Sum_probs=49.5

Q ss_pred             chhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcc-hHHHHHHHHHcCCcEEEEccC
Q 023366          113 GLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSD-FVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       113 gla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~-f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      |+..+++..|+.+.......   |.+...++.+.|-..+|+.|++++.+.. ..+.|+.+++.|+.-|+++..
T Consensus        19 ~i~~~a~~~g~~v~~~~~~~---~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~d~~   88 (302)
T TIGR02634        19 IFVAAAESLGAKVFVQSANG---NEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAYDRL   88 (302)
T ss_pred             HHHHHHHhcCCEEEEEeCCC---CHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEecCc
Confidence            56677778899887654322   2333333444444889999999997755 578999999999999999654

Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.

>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria

Probab=84.10  E-value=4.3  Score=36.00  Aligned_cols=70  Identities=13%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             CchhhhhhhcCeeeeecCCC--chhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDK--PQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dk--p~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..++++.|+.+-.+...  +.+  ......+..++ ..+++-|++++-+.+....|..++.+|+..|+++..
T Consensus        19 ~gi~~~a~~~g~~~~~~~~~~~~~~--~~~~~~i~~~~-~~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~~~~   90 (268)
T cd06306          19 YGMVEEAKRLGVSLKLLEAGGYPNL--AKQIAQLEDCA-AWGADAILLGAVSPDGLNEILQQVAASIPVIALVND   90 (268)
T ss_pred             HHHHHHHHHcCCEEEEecCCCCCCH--HHHHHHHHHHH-HcCCCEEEEcCCChhhHHHHHHHHHCCCCEEEeccC
Confidence            46777888899999876432  222  12233444455 789999999986655433678899999999999654

TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.

>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily

Probab=83.69  E-value=5  Score=35.58  Aligned_cols=68  Identities=19%  Similarity=0.216  Sum_probs=48.5

Q ss_pred             chhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcch-HHHHHHHHHcCCcEEEEccC
Q 023366          113 GLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDF-VDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       113 gla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f-~~~l~~ar~~~~~tvvvg~~  184 (283)
                      |+..+++..|+.+..+... .. + .....+..++ ..+++-||+.+.++.+ ..+++.++..|+..|+++..
T Consensus        20 gi~~~~~~~g~~~~~~~~~-~~-~-~~~~~i~~~~-~~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~   88 (289)
T cd01540          20 FAKKAAKEKGFTVVKIDVP-DG-E-KVLSAIDNLG-AQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVDDR   88 (289)
T ss_pred             HHHHHHHHcCCEEEEccCC-CH-H-HHHHHHHHHH-HcCCCEEEEccCchhhhHHHHHHHHhCCCeEEEecCC
Confidence            5666777899998876333 22 2 2333444456 7899999999877654 45789999999999999754

Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a

>PRK15408 autoinducer 2-binding protein lsrB; Provisional

Probab=83.67  E-value=2.9  Score=39.75  Aligned_cols=70  Identities=14%  Similarity=0.182  Sum_probs=49.9

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHH-HHHHHHHhhcCccEEEEEeCC-cchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALR-NHMVDMMDKRHVECLVIVSDD-SDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~-~~~~~~~~~~~v~~lvlvsdd-~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+....++.|+.|....  |.-.|.+-+ ..|..++ ..|++-|+++.-| .-+.+.|+.|+++|+..|++...
T Consensus        43 ~Gi~~aa~~~G~~v~~~~--~~~~d~~~q~~~i~~li-~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~  114 (336)
T PRK15408         43 NGAKEAGKELGVDVTYDG--PTEPSVSGQVQLINNFV-NQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSD  114 (336)
T ss_pred             HHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHH-HcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence            466677778999997622  222233333 4555566 8999999998744 44689999999999999999654

>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs

Probab=82.38  E-value=3.8  Score=36.59  Aligned_cols=70  Identities=7%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             CchhhhhhhcCeeeeec--CCCc-hhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEcc
Q 023366          112 YGLADELKRAGFWVRTV--SDKP-QAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGD  183 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v--~dkp-~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~  183 (283)
                      -|+..+++..|+.+...  ...+ ..++ .....+..++ .++++-||+..++....+.++.+.+.+.-.|+|.+
T Consensus        20 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~l~-~~~vDgiIv~~~~~~~~~~~~~l~~~~~p~V~i~~   92 (280)
T cd06303          20 ASFTARLEELNIPYELTQFSSRPGIDHR-LQSQQLNEAL-QSKPDYLIFTLDSLRHRKLIERVLASGKTKIILQN   92 (280)
T ss_pred             HHHHHHHHHcCCcEEEEEeccCcccCHH-HHHHHHHHHH-HcCCCEEEEcCCchhhHHHHHHHHhCCCCeEEEeC
Confidence            36677788899877654  2222 1111 1123333445 78999999987665567888888888888888855

Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate

>PRK02947 hypothetical protein; Provisional

Probab=81.97  E-value=2.1  Score=39.39  Aligned_cols=49  Identities=27%  Similarity=0.367  Sum_probs=39.6

Q ss_pred             cCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCC-----------Ccccccccccccc
Q 023366          150 RHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDIN-----------DGALKRIADASFS  198 (283)
Q Consensus       150 ~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~-----------~~~l~r~ad~~~s  198 (283)
                      ..-++++++|-.   .+-..+++.|+++|+++|+|.+..           +..|.+.||+-+.
T Consensus       105 ~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~  167 (246)
T PRK02947        105 RPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD  167 (246)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence            345788999855   667778889999999999999965           3589999998774

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=81.73  E-value=2.1  Score=39.91  Aligned_cols=77  Identities=14%  Similarity=0.142  Sum_probs=54.0

Q ss_pred             chhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccc
Q 023366          113 GLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGAL  189 (283)
Q Consensus       113 gla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l  189 (283)
                      .++..|.+.|..+..+.+.     ..+..+.  .+ -..-++++.+|-+   .+-..+++.|+++|.++|.|++..+..|
T Consensus        59 ~~~~~l~~~g~~~~~~~~~-----~~~~~~~--~~-~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~l  130 (321)
T PRK11543         59 KIAATLASTGTPAFFVHPA-----EALHGDL--GM-IESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPL  130 (321)
T ss_pred             HHHHHHHcCCCceeecChH-----HHhhCCc--Cc-cCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChh
Confidence            3455667889988876531     0111111  11 1234688888876   5567788899999999999999888899


Q ss_pred             cccccccc
Q 023366          190 KRIADASF  197 (283)
Q Consensus       190 ~r~ad~~~  197 (283)
                      .+.||.-|
T Consensus       131 a~~ad~~l  138 (321)
T PRK11543        131 GLAAKAVL  138 (321)
T ss_pred             HHhCCEEE
Confidence            99999987

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=81.63  E-value=0.81  Score=28.26  Aligned_cols=19  Identities=37%  Similarity=0.929  Sum_probs=16.8

Q ss_pred             ccCCCCCCccCCchhHhhhh
Q 023366           42 YVCGVCGRRFYSNEKLVNHF   61 (283)
Q Consensus        42 ykC~vCGKsFss~ssLkrH~   61 (283)
                      ..|+.||+.| ....|..|+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~   21 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHE   21 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHH
Confidence            5799999999 778899997

>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators

Probab=81.31  E-value=6.6  Score=34.02  Aligned_cols=69  Identities=16%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..+++..|+.+.......+   ....+.+..++...+++.+++.+.+.+ ...+..+.+.++..|+++..
T Consensus        23 ~~i~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~vdgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~   91 (268)
T cd06271          23 SGLSEALAEHGYDLVLLPVDPD---EDPLEVYRRLVESGLVDGVIISRTRPD-DPRVALLLERGFPFVTHGRT   91 (268)
T ss_pred             HHHHHHHHHCCceEEEecCCCc---HHHHHHHHHHHHcCCCCEEEEecCCCC-ChHHHHHHhcCCCEEEECCc
Confidence            4677888889988876544333   223344555565568999999875543 35577888899999999754

Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso

>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria

Probab=81.28  E-value=7.9  Score=33.52  Aligned_cols=70  Identities=19%  Similarity=0.264  Sum_probs=47.0

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+...+++.|+.+.......+   ......+.+.+.+.+++-|++++.+.+-..+++.++..|+..|.++..
T Consensus        19 ~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~   88 (268)
T cd06289          19 AGLEEVLEEAGYTVFLANSGED---VERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGIPVVLVARE   88 (268)
T ss_pred             HHHHHHHHHcCCeEEEecCCCC---hHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcCCCEEEEecc
Confidence            3555666778888876543322   222233333344789999999886554345889999999999999754

This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=81.17  E-value=6.1  Score=35.20  Aligned_cols=70  Identities=13%  Similarity=0.098  Sum_probs=50.7

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcc-hHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSD-FVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~-f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+...++..|+.+.......+..  .....+..++ .++++-||+.+-+++ ..++++.+.++|+..|+++..
T Consensus        19 ~gi~~~~~~~G~~~~~~~~~~d~~--~~~~~i~~~~-~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~   89 (272)
T cd06313          19 QAADEAGKLLGVDVTWYGGALDAV--KQVAAIENMA-SQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTL   89 (272)
T ss_pred             HHHHHHHHHcCCEEEEecCCCCHH--HHHHHHHHHH-HcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCC
Confidence            466667777899988765443321  2334455556 899999999886655 577889999999999999764

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs

Probab=80.98  E-value=5.7  Score=36.07  Aligned_cols=70  Identities=23%  Similarity=0.292  Sum_probs=49.1

Q ss_pred             CchhhhhhhcCeeeeec-CCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcc-hHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTV-SDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSD-FVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v-~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~-f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..++++.|+.|..+ ....+..  .....+..++ ..+++-||+++-+.+ +..+++.++++|+..|+|+..
T Consensus        19 ~gi~~~a~~~g~~v~~~~~~~~d~~--~~~~~i~~~~-~~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v~~~   90 (298)
T cd06302          19 EGAKEAAKELGVDAIYVGPTTADAA--GQVQIIEDLI-AQGVDAIAVVPNDPDALEPVLKKAREAGIKVVTHDSD   90 (298)
T ss_pred             HHHHHHHHHhCCeEEEECCCCCCHH--HHHHHHHHHH-hcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEEcCC
Confidence            56777888899998875 3333321  1123333445 789999999875544 678899999999999999753

Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p

>PLN03086 PRLI-interacting factor K; Provisional

Probab=80.89  E-value=1.1  Score=46.75  Aligned_cols=47  Identities=13%  Similarity=0.252  Sum_probs=36.9

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCC----------chhHhhhhhccccccccccccCc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYS----------NEKLVNHFKQIHEREQKKRLNQI   76 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss----------~ssLkrH~KriHtGEK~Krf~~~   76 (283)
                      .+..|+.+|.+.+|+.|..|++.|..          ...|..|. ..+ |.++..|..+
T Consensus       491 ~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE-~~C-G~rt~~C~~C  547 (567)
T PLN03086        491 QMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHE-SIC-GSRTAPCDSC  547 (567)
T ss_pred             HHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHH-Hhc-CCcceEcccc
Confidence            45668899999999999999999952          34799998 654 7777777554

>TIGR00274 N-acetylmuramic acid 6-phosphate etherase

Probab=80.65  E-value=2.3  Score=40.40  Aligned_cols=49  Identities=18%  Similarity=0.112  Sum_probs=41.6

Q ss_pred             CccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccccccccccccH
Q 023366          151 HVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSW  199 (283)
Q Consensus       151 ~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~sW  199 (283)
                      --|++|.+|-+   .+..++++.|+++|..||+|+..+...|.+.||+.+.-
T Consensus       126 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~  177 (291)
T TIGR00274       126 KNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET  177 (291)
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEec
Confidence            45788999866   55678899999999999999998878899999998764

This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=80.61  E-value=4.5  Score=42.01  Aligned_cols=95  Identities=17%  Similarity=0.229  Sum_probs=64.7

Q ss_pred             hHHHHHHHhhhccCCC----CCc--------hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc
Q 023366           95 MEKYKRAARAILTPKI----GYG--------LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS  162 (283)
Q Consensus        95 ~~KY~~AA~~~l~pk~----gyg--------la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~  162 (283)
                      .+.+.+++..+...+.    |.|        +...|.+.|+.+....|.      .+.......+  ..-++||++|-.-
T Consensus       455 ~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~------~~~~~~~~~l--~~~DvvI~iS~sG  526 (638)
T PRK14101        455 FEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDL------YMQAASAALL--GKGDVIVAVSKSG  526 (638)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCCH------HHHHHHHhcC--CCCCEEEEEeCCC
Confidence            3567777777766664    333        344567889888876542      2222211223  2447899999754


Q ss_pred             ---chHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          163 ---DFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       163 ---~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                         +...+++.|+++|+++|+|.+. ...|.+.||.-|.
T Consensus       527 ~t~e~i~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~  564 (638)
T PRK14101        527 RAPELLRVLDVAMQAGAKVIAITSS-NTPLAKRATVALE  564 (638)
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence               4567788899999999999995 6889999998773

>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=80.49  E-value=8.2  Score=33.91  Aligned_cols=70  Identities=16%  Similarity=0.264  Sum_probs=47.5

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcc----hHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSD----FVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~----f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..+++..|+.+-+.....+ .+ .....+..++ ..+|+.|++.+-+++    ...+++.++++++..|+++..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~-~~-~~~~~i~~l~-~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~~~~   92 (273)
T cd01541          19 RGIESVLSEKGYSLLLASTNND-PE-RERKCLENML-SQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINAS   92 (273)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCC-HH-HHHHHHHHHH-HcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEEecC
Confidence            4677788889999876543222 11 1123333445 789999999765432    457889999999999999754

Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i

>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=80.45  E-value=8.1  Score=33.74  Aligned_cols=69  Identities=14%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHH-HHHHHhhcCccEEEEEeCCcc-hHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNH-MVDMMDKRHVECLVIVSDDSD-FVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~-~~~~~~~~~v~~lvlvsdd~~-f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..+++..|+.+.......+   ...... +..++ ..+++.|++.+-+.+ +.++++.+++.|+..|.++..
T Consensus        19 ~~i~~~~~~~g~~~~i~~~~~~---~~~~~~~~~~~~-~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~   89 (267)
T cd06322          19 NAMKEEAKKQKVNLIVSIANQD---LNKQLSDVEDFI-TKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITVDIA   89 (267)
T ss_pred             HHHHHHHHhcCCEEEEecCCCC---HHHHHHHHHHHH-HcCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEEccc
Confidence            5677778888988865432221   222222 22335 789999999775543 678899999999999999753

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK12342 hypothetical protein; Provisional

Probab=80.37  E-value=7.3  Score=36.59  Aligned_cols=67  Identities=16%  Similarity=0.168  Sum_probs=48.1

Q ss_pred             hhhhhhcCeeeeecCCCchhHHHH-HHHHHHHHHhhcCccEEEEEeCC----cch---HHHHHHHHH-cCCcEEEEccCC
Q 023366          115 ADELKRAGFWVRTVSDKPQAADVA-LRNHMVDMMDKRHVECLVIVSDD----SDF---VDVLQEAKY-RCLKTVVVGDIN  185 (283)
Q Consensus       115 a~~L~RaG~~V~~v~dkp~aaD~a-l~~~~~~~~~~~~v~~lvlvsdd----~~f---~~~l~~ar~-~~~~tvvvg~~~  185 (283)
                      +..|++.|-.|-.++..|..++.+ |++..   | ..|++-.|||||+    +|-   +.+|-.+-+ .+..=|+-|..+
T Consensus        44 AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~a---l-amGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s  119 (254)
T PRK12342         44 ASQLATDGDEIAALTVGGSLLQNSKVRKDV---L-SRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGS  119 (254)
T ss_pred             HHHHhhcCCEEEEEEeCCChHhHHHHHHHH---H-HcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence            334555677899999999876655 76653   6 7899999999988    454   455655544 478788888743

>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism

Probab=80.28  E-value=7.9  Score=33.91  Aligned_cols=69  Identities=14%  Similarity=0.198  Sum_probs=47.4

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..+++..|+.+..+.....   ......+.+.|.+.+++.|++++.+..- ..++.+++.|+..|+++..
T Consensus        19 ~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~i~~~~~~~vdgii~~~~~~~~-~~~~~~~~~~ipvV~~~~~   87 (268)
T cd06270          19 SGVESVARKAGKHLIITAGHHS---AEKEREAIEFLLERRCDALILHSKALSD-DELIELAAQVPPLVLINRH   87 (268)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCc---hHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHhhCCCCEEEEecc
Confidence            4667777889999987654333   2333344444448899999998754222 2388899999999999764

Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-04
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	3e-04
2qip_A	165	Protein of unknown function VPA0982; APC85975, vib	5e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 6e-06
 Identities = 41/379 (10%), Positives = 99/379 (26%), Gaps = 131/379 (34%)

Query: 13  VPQVVREQREE---RKLFNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH---FKQIHE 66
           +  ++  +       +LF  L +    K  E        ++F      +N+      I  
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLS----KQEEMV------QKFVEEVLRINYKFLMSPIKT 100

Query: 67  REQKKRLNQI--ESARGK--RRVHLVGKYSM-KMEKYKRAARAI--LTPKIG---YG--- 113
            +++  +        R +      +  KY++ +++ Y +  +A+  L P       G   
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 114 -----LADELKRAG----------FWVRTVSDKPQAADV----------------ALRNH 142
                +A ++  +           FW+  + +      V                +  +H
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 143 MVD---------------MMDKRHVECLVIVSD---------------------DSDFVD 166
             +               +  K +  CL+++ +                          D
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 167 VLQEAKYRCLKTVVVGDINDGALKRIADASFS-WRDILMGKAKKEA-------VSVVGKW 218
            L  A       + +   +         +    + D       +E        +S++ + 
Sbjct: 280 FLSAATT---THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE- 335

Query: 219 EDRDILKRLEWTYSPEVEKKAHGWADGNK--DADIDDATGANNADC------------IP 264
             RD L    W     V              ++ ++    A                 IP
Sbjct: 336 SIRDGLAT--WDNWKHVNCDKL-----TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 265 KEDNGA-WWELESSDAEAI 282
                  W+++  SD   +
Sbjct: 389 TILLSLIWFDVIKSDVMVV 407

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIH 65
          PY+C  CG+ F   + L  H KQ+H
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVH 36

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIHEREQ 69
          PY C  C   F  N +LV H +++H  + 
Sbjct: 10 PYSCAECKETFSDNNRLVQH-QKMHTVKS 37

>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus} Length = 165

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 76  IESARGKRRVHLVGKYSMKMEKYKRAARAILTPKIGYGLADELKRAGFWVRTVSDKPQAA 135
              A  ++ V     Y++     K+     +   +G+    E+    +  R         
Sbjct: 39  WYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGF----EVMLKPYIQRRDGSAKGDW 94

Query: 136 DVALRNHMVDMMD-KRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVV---GDINDGALKR 191
           DV +    +D ++    V+ +++VS D DF  +++  + R  K V V     +    L  
Sbjct: 95  DVGI---TLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLID 151

Query: 192 IADASFSWRDILM 204
            AD   +  D  +
Sbjct: 152 CADNFVAIDDDFL 164

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIH 65
          PY CG+C R F   + L+ H ++IH
Sbjct: 30 PYPCGLCNRAFTRRDLLIRHAQKIH 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.04
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.76
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	98.74
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.74
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.73
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.73
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.73
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.73
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.73
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.73
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.72
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.72
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.72
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.72
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	98.72
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.72
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.72
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.71
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.71
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.71
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.71
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.71
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.71
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.7
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.7
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.7
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.69
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.69
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.69
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.69
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.69
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.69
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.69
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.69
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.68
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.68
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.68
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.68
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.68
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.68
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.68
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.68
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.68
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.68
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.67
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.67
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.67
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.67
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.67
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.66
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.66
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.66
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	98.66
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.66
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.66
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.66
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.65
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	98.65
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.65
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	98.65
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.64
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.64
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.64
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.64
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.64
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.64
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.64
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.64
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.63
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.63
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.61
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.61
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.59
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.59
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.58
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	98.58
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	98.57
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.56
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.56
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.56
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.55
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.54
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.53
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.53
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.5
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.5
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.49
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.48
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.48
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.46
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.46
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.45
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.44
2qip_A	165	Protein of unknown function VPA0982; APC85975, vib	98.43
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	98.42
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	98.4
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	98.4
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.4
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	98.38
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.38
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.38
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.37
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	98.37
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.36
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.35
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.35
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.35
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	98.34
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	98.34
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	98.33
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.33
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.33
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.32
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	98.32
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.31
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.3
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.29
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	98.28
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.27
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.25
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.23
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	98.23
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.22
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	98.21
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.21
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.21
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.19
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.18
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.17
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	98.17
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.16
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.16
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.15
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	98.13
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	98.12
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.12
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.11
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	98.09
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	98.08
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.06
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.06
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	98.02
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.02
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	98.01
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.01
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.0
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	97.99
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	97.99
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	97.98
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	97.98
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.98
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	97.97
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	97.96
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	97.96
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.96
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	97.94
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	97.93
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.93
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	97.93
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.92
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	97.92
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.91
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.91
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	97.89
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.88
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	97.88
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.09
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.87
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	97.86
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.86
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	97.86
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	97.86
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.06
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.84
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	97.83
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.82
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.8
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.8
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.78
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	97.75
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	97.73
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	97.73
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.72
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	97.72
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.69
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.68
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.61
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	97.58
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	97.57
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.53
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.65
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.42
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	97.41
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.34
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	97.34
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.25
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	97.2
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	96.86
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	96.79
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	96.36
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	96.08
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	95.4
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.28
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	95.21
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	94.01
2l69_A	134	Rossmann 2X3 fold protein; structural genomics, no	93.87
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.53
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	93.45
3sho_A	187	Transcriptional regulator, RPIR family; structural	93.44
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	93.35
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.35
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.22
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	93.19
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.19
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	93.19
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	93.09
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.08
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	93.08
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	93.02
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.95
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	92.95
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.93
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.93
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.9
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.83
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	92.82
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	92.81
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.65
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	92.63
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.52
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	92.33
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	92.32
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.27
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.26
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	92.23
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.22
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.21
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.2
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	92.19
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	92.17
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.17
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.17
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	92.16
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	92.12
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.1
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.09
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	92.01
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.99
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.98
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.98
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	91.97
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	91.96
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.92
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	91.91
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.84
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	91.83
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.8
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.78
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.77
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.72
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.71
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.71
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.7
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.68
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.63
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	91.62
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	91.6
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	91.59
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	91.57
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.56
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.53
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.51
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.5
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.48
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.46
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.41
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.4
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.35
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.32
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	91.25
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	91.23
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	91.23
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	91.22
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.16
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.12
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.06
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	91.04
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.03
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.97
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.93
2xbl_A	198	Phosphoheptose isomerase; capsule; HET: M7P PGE PG	90.82
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	90.81
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.64
1tk9_A	188	Phosphoheptose isomerase 1; lipopolysaccharide bio	90.63
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	90.57
1jeo_A	180	MJ1247, hypothetical protein MJ1247; RUMP pathway,	90.53
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.49
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	90.47
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	90.44
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	90.35
1m3s_A	186	Hypothetical protein YCKF; structural genomics, PS	90.33
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	90.24
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.12
2yva_A	196	DNAA initiator-associating protein DIAA; intermole	89.97
2i2w_A	212	Phosphoheptose isomerase; lipopolysaccharide biosy	89.77
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	89.57
3trj_A	201	Phosphoheptose isomerase; lipopolysaccharide biosy	89.34
2xhz_A	183	KDSD, YRBH, arabinose 5-phosphate isomerase; lipop	87.98
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.41
1x92_A	199	APC5045, phosphoheptose isomerase; midwest centre	87.17
1vim_A	200	Hypothetical protein AF1796; structural genomics,	87.14
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.96
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	86.9
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.79
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	86.78
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	86.74
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	86.59
3h75_A	350	Periplasmic sugar-binding domain protein; protein	86.51
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.33
3fxa_A	201	SIS domain protein; structural genomics, joint cen	86.22
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	85.94
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	85.88
3etn_A	220	Putative phosphosugar isomerase involved in capsu	84.57
3o74_A	272	Fructose transport system repressor FRUR; dual tra	84.4
3cvj_A	243	Putative phosphoheptose isomerase; rossman fold, 3	84.25
3mmz_A	176	Putative HAD family hydrolase; structural genomics	84.22
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	84.13
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	84.05
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.8
3gbv_A	304	Putative LACI-family transcriptional regulator; NY	82.42
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.13
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	82.12
3k4h_A	292	Putative transcriptional regulator; structural gen	82.01
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	81.91
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.75
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	81.67
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	81.04
3hcw_A	295	Maltose operon transcriptional repressor; RNA-bind	80.83
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	80.77
1nri_A	306	Hypothetical protein HI0754; structural genomics,	80.54
2zj3_A	375	Glucosamine--fructose-6-phosphate aminotransferase	80.53
3g68_A	352	Putative phosphosugar isomerase; SIS domain, doubl	80.52
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.48
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	80.43
2ioy_A	283	Periplasmic sugar-binding protein; ribose binding	80.37
3knz_A	366	Putative sugar binding protein; structural genomic	80.16

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.04  E-value=5.9e-11  Score=85.60  Aligned_cols=52  Identities=19%  Similarity=0.406  Sum_probs=47.0

Q ss_pred             CCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhh
Q 023366           38 PAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        38 GEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k   90 (283)
                      .|+||.|.+||+.|.....|..|+ ++|++++|       +.|.+.+.|+.|+++|++++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~-~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHR-RAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHH-HHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHH-HHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            479999999999999999999999 99999994       88889999999999998763

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=4.5e-09  Score=67.17  Aligned_cols=41  Identities=24%  Similarity=0.550  Sum_probs=38.0

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      |+++|++++||.|..|++.|.....|..|+ ++|+++++..+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI-RVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTG-GGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHH-HHhCCCCCCCC
Confidence            788999999999999999999999999999 99999987643

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=98.74  E-value=1.5e-09  Score=88.69  Aligned_cols=59  Identities=25%  Similarity=0.352  Sum_probs=50.1

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      ++.+|+|++||.|.+|++.|.+...|..|+ ++|+++++       +.|.....|..|+++|++++.
T Consensus        13 ~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   78 (133)
T 2lt7_A           13 YELIVDGRVYYICIVCKRSYVCLTSLRRHF-NIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR   78 (133)
T ss_dssp             EEEEETTEEEEEETTTCCEESCHHHHHHHH-HHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCC
T ss_pred             ceeecCCCcCeECCCCCCCcCCHHHHHHHH-HHcCCCCCeeCCccCeecccccchhhhccccCCCcc
Confidence            577889999999999999999999999998 88988884       777888889999998876654

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=6.3e-09  Score=68.05  Aligned_cols=43  Identities=26%  Similarity=0.528  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHG-GGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.73  E-value=5e-09  Score=67.10  Aligned_cols=41  Identities=24%  Similarity=0.538  Sum_probs=38.1

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      |+++|++++||.|..|++.|.+...|..|+ ++|+++++..+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C   41 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQ-RTHAGESGPSS   41 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHH-GGGCCCCSCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHH-HhcCCCCCCCC
Confidence            578999999999999999999999999999 99999988765

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=6.1e-09  Score=68.13  Aligned_cols=43  Identities=30%  Similarity=0.526  Sum_probs=40.1

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|++++|..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHR-GIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHH-TTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHH-HhhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=5.4e-09  Score=66.81  Aligned_cols=41  Identities=24%  Similarity=0.490  Sum_probs=37.8

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      |+++|++++||.|..|++.|.+...|..|+ ++|+++++..+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C   41 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQ-KMHTVKSGPSS   41 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHH-HHTSCCSSCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHH-HHhCCCCCCCC
Confidence            578899999999999999999999999999 99999988655

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=5.7e-09  Score=67.33  Aligned_cols=42  Identities=29%  Similarity=0.501  Sum_probs=39.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C   43 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHT-RTHTGESGPSS   43 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHH-TTTCCSSSSCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHh-hhcCCCCCCCC
Confidence            4788999999999999999999999999999 99999988765

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=6e-09  Score=68.17  Aligned_cols=43  Identities=26%  Similarity=0.502  Sum_probs=40.2

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +|+++|++++||.|..|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQ-VIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHH-TTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=6.7e-09  Score=67.75  Aligned_cols=43  Identities=26%  Similarity=0.479  Sum_probs=40.1

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.+...|..|+ ++|++++|..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQ-RIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHH-GGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=3.8e-09  Score=80.51  Aligned_cols=61  Identities=15%  Similarity=0.196  Sum_probs=55.2

Q ss_pred             hhhcccCCCCCccCCCCCCccC-CchhHhhhhhccccc-cc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFY-SNEKLVNHFKQIHER-EQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFs-s~ssLkrH~KriHtG-EK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+++|++++||.|.+|++.|. ....|..|+ ++|++ ++       ++.|.....|..|+++|++++..
T Consensus        14 ~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~-~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~   83 (98)
T 2gqj_A           14 QWQRAIHERGEAVCPTCNVVTRKTLVGLKKHM-EVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS   83 (98)
T ss_dssp             HHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHH-HHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSS
T ss_pred             HHHHHhccCCCcCCCCCCCChhhhHHHHHHHH-HHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCC
Confidence            4788999999999999999999 999999999 89988 77       58889999999999999887664

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.72  E-value=5.3e-09  Score=74.78  Aligned_cols=57  Identities=30%  Similarity=0.579  Sum_probs=51.5

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhh
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~   89 (283)
                      +.++|++++||.|.+|++.|.....|..|+ ++|+++++       +.|.....|..|+++|+.+
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQ-RVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHH-HGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHH-HhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            467899999999999999999999999999 99999884       7778889999999999764

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=6.7e-09  Score=68.08  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=40.1

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|++++|..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ-RVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHH-TTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=7.4e-09  Score=67.88  Aligned_cols=43  Identities=26%  Similarity=0.529  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.+...|..|+ ++|++++|..++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQ-RVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHG-GGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHH-HhcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=5.4e-09  Score=67.77  Aligned_cols=42  Identities=24%  Similarity=0.422  Sum_probs=39.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C   43 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHE-RTHARKSGPSS   43 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHH-HHCCCCCSSCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHh-HhcCCCCCCCC
Confidence            4788999999999999999999999999999 99999988765

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=8.3e-09  Score=67.47  Aligned_cols=44  Identities=27%  Similarity=0.487  Sum_probs=40.4

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|++++|..+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~~   45 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHG-GGTSCCCCCSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHh-hhcCCCCCCCCCC
Confidence            4788999999999999999999999999999 9999999887753

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=98.72  E-value=2.8e-09  Score=76.74  Aligned_cols=41  Identities=20%  Similarity=0.449  Sum_probs=37.7

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      ++..|+++|++++||.|.+||+.|.+...|..|+ ++|+||+
T Consensus        19 ~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~-~~Htgep   59 (60)
T 4gzn_C           19 GLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL-KVHQNKP   59 (60)
T ss_dssp             HHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHG-GGGSCC-
T ss_pred             HHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHh-CccCCCC
Confidence            5667999999999999999999999999999999 9999975

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=5.6e-09  Score=68.48  Aligned_cols=43  Identities=23%  Similarity=0.431  Sum_probs=40.1

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQ-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHH-TTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=6.3e-09  Score=67.89  Aligned_cols=43  Identities=21%  Similarity=0.380  Sum_probs=40.2

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +|+++|++++||.|..|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHE-RLHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHH-HHCCSSSCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHH-HhcCCCCCCCCC
Confidence            5889999999999999999999999999999 999999988775

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.8e-09  Score=67.73  Aligned_cols=43  Identities=26%  Similarity=0.539  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|++++|..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHR-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHG-GGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHH-HhcCCCCCcCCC
Confidence            4788999999999999999999999999999 999999988775

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=7.1e-09  Score=67.79  Aligned_cols=43  Identities=28%  Similarity=0.500  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|++++|..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHH-TTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHh-HhcCCCCCCCCC
Confidence            3788999999999999999999999999999 999999988775

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.71  E-value=8.7e-09  Score=67.37  Aligned_cols=43  Identities=16%  Similarity=0.225  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQ-NVHVGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHG-GGGSSSSCSCSS
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHH-HHcCCCCCcCCC
Confidence            4788999999999999999999999999999 999999988775

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.71  E-value=7e-09  Score=67.66  Aligned_cols=43  Identities=19%  Similarity=0.365  Sum_probs=40.1

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.+...|..|+ ++|++++|..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQ-RSHTGVKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHG-GGSSSCCCSCCT
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=7.1e-09  Score=67.97  Aligned_cols=43  Identities=21%  Similarity=0.392  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHK-RVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHH-HHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            3788999999999999999999999999999 999999987774

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=6.7e-09  Score=68.10  Aligned_cols=43  Identities=19%  Similarity=0.353  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccc-ccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHER-EQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtG-EK~Krf~   74 (283)
                      +|+++|++++||.|..|++.|.....|..|+ ++|++ +++..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHE-RIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHH-TTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHH-HHcCCCCCCCCCC
Confidence            5889999999999999999999999999999 99999 9887764

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.71  E-value=4.7e-09  Score=68.84  Aligned_cols=43  Identities=23%  Similarity=0.487  Sum_probs=40.1

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +|+++|++++||.|..|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQ-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHH-HHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4789999999999999999999999999999 999999988775

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=4.8e-09  Score=68.79  Aligned_cols=43  Identities=23%  Similarity=0.427  Sum_probs=40.2

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHR-RSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHH-HHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHH-HhcCCCCCCCCC
Confidence            4789999999999999999999999999999 999999988775

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.5e-09  Score=67.97  Aligned_cols=44  Identities=27%  Similarity=0.483  Sum_probs=40.5

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      +|+++|++++||.|..|++.|.....|..|+ ++|+++++..+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~~   45 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQ-RIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHH-TTTCCCCCCSCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHH-hhcCCCCCCCCCC
Confidence            5889999999999999999999999999999 9999999887753

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=5.9e-09  Score=68.19  Aligned_cols=43  Identities=23%  Similarity=0.573  Sum_probs=40.2

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +|+++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQ-KIHTKQKPSGPS   44 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHH-HHTSCCCCSSCS
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHH-HHcCCCCCCCCC
Confidence            5889999999999999999999999999999 999999988775

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=6.4e-09  Score=68.03  Aligned_cols=43  Identities=26%  Similarity=0.512  Sum_probs=40.1

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|++++|..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQ-KIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHH-TTTTTSCCCCTT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=8.5e-09  Score=67.41  Aligned_cols=43  Identities=23%  Similarity=0.510  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQ-KIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHH-TTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988774

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=1.2e-08  Score=66.83  Aligned_cols=43  Identities=23%  Similarity=0.482  Sum_probs=39.7

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQ-RVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHG-GGSCCSCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            3678999999999999999999999999999 999999987774

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=5.1e-09  Score=68.51  Aligned_cols=43  Identities=23%  Similarity=0.458  Sum_probs=40.2

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +|+++|++++||.|.+|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQ-KTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHH-HHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4789999999999999999999999999999 999999988774

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=7.2e-09  Score=67.76  Aligned_cols=43  Identities=23%  Similarity=0.418  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQ-RIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHH-GGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHH-hHhCCCCCCCCC
Confidence            4789999999999999999999999999999 999999987764

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.70  E-value=7.1e-09  Score=67.96  Aligned_cols=44  Identities=23%  Similarity=0.503  Sum_probs=40.4

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~~   45 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQ-RVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHH-HHHSSCCCSSCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHH-HHcCCCCCCCCCC
Confidence            4788999999999999999999999999999 9999999887753

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=8.3e-09  Score=66.23  Aligned_cols=41  Identities=29%  Similarity=0.590  Sum_probs=37.6

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      |+++|++++||.|..|++.|.....|..|+ ++|+++++..+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL-RIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHT-TTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHH-HhcCCCCCCCC
Confidence            678999999999999999999999999999 99999987543

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=9.6e-09  Score=67.01  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|++++|..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQ-RIHTGENPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHH-TTTTTSCCSCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=8e-09  Score=67.54  Aligned_cols=43  Identities=26%  Similarity=0.508  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQ-RIHSGKKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHH-GGGSSCCCSCSS
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHH-HHhcCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=6.5e-09  Score=67.04  Aligned_cols=42  Identities=21%  Similarity=0.415  Sum_probs=38.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      .|+++|++++||.|..|++.|.+...|..|+ ++|+++++..+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C   43 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQ-RTHTGESGPSS   43 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHH-HHTTTSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHH-HHhCCCCCCCC
Confidence            4788999999999999999999999999999 99999988765

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=1.2e-08  Score=66.93  Aligned_cols=43  Identities=21%  Similarity=0.392  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ-RVHMGEKTSGPS   44 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHG-GGGGSCCCCCSC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHH-HhcCCCCCCCCC
Confidence            3788999999999999999999999999999 999999987765

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=5.7e-09  Score=68.10  Aligned_cols=43  Identities=23%  Similarity=0.441  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQ-ATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHH-HHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988774

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.3e-09  Score=67.55  Aligned_cols=43  Identities=28%  Similarity=0.567  Sum_probs=39.8

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHH-SVHSGERPSGPS   44 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHT-TTTTSCCSCTTS
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHH-HhcCCCCCCCCC
Confidence            3788999999999999999999999999999 999999987764

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=6.3e-09  Score=67.88  Aligned_cols=44  Identities=23%  Similarity=0.457  Sum_probs=40.5

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      +|+++|++++||.|..|++.|.+...|..|+ ++|+++++..+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~~   45 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQ-RIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHH-HHHSCCCTTSSSC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHH-HHhCCCCCCCCCC
Confidence            4889999999999999999999999999999 9999999877753

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=8.5e-09  Score=67.41  Aligned_cols=44  Identities=20%  Similarity=0.502  Sum_probs=40.4

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      .|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+..
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~~   45 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHS-MVHTAEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHH-HHTTCCCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHH-HHcCCCCCCCCCC
Confidence            4788999999999999999999999999999 9999999887753

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=5.6e-09  Score=68.29  Aligned_cols=43  Identities=23%  Similarity=0.433  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHL-RSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHH-HHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.69  E-value=1e-08  Score=67.18  Aligned_cols=44  Identities=20%  Similarity=0.409  Sum_probs=40.4

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      .|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~~   45 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHH-KLHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHH-HHHSCCSSCSCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHH-HHcCCCCCCCCCC
Confidence            4789999999999999999999999999999 9999999887753

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.7e-09  Score=66.96  Aligned_cols=43  Identities=28%  Similarity=0.529  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQ-RIHTGEKPSGPS   44 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHH-TTTTTCSCCCSC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHH-HhcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.69  E-value=8.2e-09  Score=67.49  Aligned_cols=43  Identities=26%  Similarity=0.457  Sum_probs=40.1

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQ-KIHTGEKPSGPS   44 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHH-TGGGCCCCCSSS
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHH-HhcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=7.9e-09  Score=67.42  Aligned_cols=43  Identities=28%  Similarity=0.557  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQ-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHH-TTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988774

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=9.1e-09  Score=67.12  Aligned_cols=43  Identities=19%  Similarity=0.389  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQ-RTHVDDKHSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHH-HHCCSCCCSCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=5.2e-09  Score=67.05  Aligned_cols=41  Identities=29%  Similarity=0.515  Sum_probs=37.8

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      |+++|++++||.|..|++.|.+...|..|+ ++|+++++..+
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV-LIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHT-HHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHH-HHcCCCCCCCC
Confidence            678999999999999999999999999999 99999987653

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=8e-09  Score=67.38  Aligned_cols=43  Identities=19%  Similarity=0.414  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.+...|..|+ ++|++++|..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQ-RTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHH-HTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.1e-08  Score=66.90  Aligned_cols=43  Identities=21%  Similarity=0.506  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQ-RVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTG-GGGSSCCSSCSC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=9.8e-09  Score=67.28  Aligned_cols=43  Identities=21%  Similarity=0.380  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQ-KIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHG-GGTSCSSCSCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            3788999999999999999999999999999 999999988775

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.2e-08  Score=66.75  Aligned_cols=44  Identities=23%  Similarity=0.379  Sum_probs=40.4

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~~   45 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHR-RIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHH-TTTTTCCCCSSCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHH-HHhCCCCCCCCCC
Confidence            4788999999999999999999999999999 9999999887753

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=8.5e-09  Score=67.42  Aligned_cols=44  Identities=27%  Similarity=0.521  Sum_probs=40.5

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|++++|..+..
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~~   45 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQ-QIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHH-HTTSSCCSCCSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHH-HHhCCCCCCCCCC
Confidence            4788999999999999999999999999999 9999999887753

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.68  E-value=7.2e-09  Score=66.20  Aligned_cols=41  Identities=24%  Similarity=0.493  Sum_probs=37.7

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      |+++|++++||.|..|++.|.....|..|+ ++|+++++..+
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~-~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQ-RSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHH-HHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHh-hhcCCCCCCCC
Confidence            678999999999999999999999999999 99999987653

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=1.2e-08  Score=66.80  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHM-RTHSGEKPSGPS   44 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHH-TTTCCSCSSCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987775

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=9.9e-09  Score=66.50  Aligned_cols=42  Identities=17%  Similarity=0.332  Sum_probs=39.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C   43 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQ-KTHAAKSGPSS   43 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHG-GGGCCCCCTTC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHH-HHcCCCCCcCC
Confidence            4788999999999999999999999999999 99999988765

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=9.5e-09  Score=66.91  Aligned_cols=42  Identities=21%  Similarity=0.378  Sum_probs=38.6

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++.+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHE-RTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHH-GGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHH-hHhcCCCCCCC
Confidence            4789999999999999999999999999999 99999987653

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=7.1e-09  Score=67.80  Aligned_cols=43  Identities=23%  Similarity=0.468  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +|+++|++++||.|..|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQ-RTHAGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHH-HHHTTSCCSCSS
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHH-HHcCCCCCCCCC
Confidence            4789999999999999999999999999999 999999987765

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=9.3e-09  Score=67.07  Aligned_cols=43  Identities=23%  Similarity=0.426  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQ-KCHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHH-HHHSCCSSCCSC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHH-HhcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=6.9e-09  Score=68.03  Aligned_cols=43  Identities=26%  Similarity=0.421  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQ-QSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHH-HHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987764

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=7.4e-09  Score=66.94  Aligned_cols=42  Identities=24%  Similarity=0.476  Sum_probs=38.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C   43 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQ-KTHSGQSGPSS   43 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHH-TTSSSSCSCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHH-HHcCCCCCCCC
Confidence            4788999999999999999999999999999 99999988665

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=9.6e-09  Score=67.17  Aligned_cols=43  Identities=28%  Similarity=0.484  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|++++|..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQ-LIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHH-TTTCCCCCSCCS
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=6.7e-09  Score=67.91  Aligned_cols=43  Identities=26%  Similarity=0.485  Sum_probs=40.1

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQ-VIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHH-HHHHCCSCCSCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.2e-08  Score=66.75  Aligned_cols=43  Identities=23%  Similarity=0.490  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHH-MVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHG-GGGTTCCCSSTT
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            3788999999999999999999999999999 999999988775

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=6.8e-09  Score=67.90  Aligned_cols=43  Identities=28%  Similarity=0.599  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +|+++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQ-KIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHH-HHHHCSSCSSSC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHH-HhcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987775

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=8.2e-09  Score=67.32  Aligned_cols=43  Identities=23%  Similarity=0.465  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQ-AIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHH-TTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=1.1e-08  Score=66.79  Aligned_cols=43  Identities=19%  Similarity=0.277  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQ-RVHMGEKCSGPS   44 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHH-TTTCCSCSSCCS
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=9.5e-09  Score=67.02  Aligned_cols=43  Identities=28%  Similarity=0.509  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|++++|..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQ-RIHTGVKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHH-GGGSCCCSCSSC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=8.7e-09  Score=67.38  Aligned_cols=43  Identities=23%  Similarity=0.478  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHR-RVHTGGKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHT-HHHHSCCCSCSC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHH-HhcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.66  E-value=1.2e-08  Score=66.48  Aligned_cols=43  Identities=23%  Similarity=0.451  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGPS   44 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHG-GGGTSCCCCSTT
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=98.66  E-value=5.6e-09  Score=76.37  Aligned_cols=62  Identities=19%  Similarity=0.498  Sum_probs=53.6

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k   90 (283)
                      .+..|+++|++++||.|..|++.|.+...|..|+ ++|+++++       +.|.....|..|+++|++++
T Consensus        21 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH-HHHHCCCCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             HHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHH-HHcCCCCCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            4455788899999999999999999999999999 89999884       77888999999999998764

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.1e-08  Score=67.10  Aligned_cols=43  Identities=19%  Similarity=0.328  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQ-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHH-HHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1.2e-08  Score=66.49  Aligned_cols=43  Identities=30%  Similarity=0.550  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQ-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHH-GGGCCCSCCSSC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHH-HhcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=7.6e-09  Score=67.81  Aligned_cols=43  Identities=26%  Similarity=0.518  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHL-KRHFREKSSGPS   44 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHH-HHHHSTTSSCCS
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHH-HHHcCCCCCCCC
Confidence            4788999999999999999999999999999 999999987764

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=6.9e-09  Score=67.24  Aligned_cols=42  Identities=24%  Similarity=0.421  Sum_probs=38.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      +|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~-~~H~~~~~~~C   43 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQ-KIHTRKSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTH-HHHCCCCCCSC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHH-HHhCCCCCCCC
Confidence            4788999999999999999999999999999 99999988665

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.65  E-value=1.1e-08  Score=73.30  Aligned_cols=57  Identities=23%  Similarity=0.434  Sum_probs=50.2

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      ..+++++||.|..|++.|.....|..|+ ++|+++++       +.|.....|..|+++|++++.
T Consensus        10 ~~~~~~~~~~C~~C~k~f~~~~~l~~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           10 HMTHSDKPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             -CCCCCCSBCCTTSSCCBSCHHHHHHHH-HHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             cccCCCCCeECCCCCceeCCHHHHHHHH-HHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            3568899999999999999999999999 99999884       777888999999999987754

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=98.65  E-value=4.9e-09  Score=85.59  Aligned_cols=63  Identities=14%  Similarity=0.127  Sum_probs=56.6

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      ++..|+++|++++||.|.+|++.|.+...|..|+ ++|++++|       +.|.....|..|+++|..+++
T Consensus        37 ~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p  106 (133)
T 2lt7_A           37 SLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE-IHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP  106 (133)
T ss_dssp             HHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHH-HHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHcCCCCCeeCCccCeecccccchhhhc-cccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCC
Confidence            4556888999999999999999999999999999 99999984       888899999999999987654

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=6.3e-09  Score=68.22  Aligned_cols=43  Identities=26%  Similarity=0.556  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL-RVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHH-HHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987774

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.7e-08  Score=65.88  Aligned_cols=43  Identities=26%  Similarity=0.530  Sum_probs=39.7

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhc-ccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQ-IHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~Kr-iHtGEK~Krf~   74 (283)
                      .|.++|++++||.|..|++.|.....|..|+ + +|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~-~~~H~~~k~~~C~   45 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHW-RYYHTGEKPSGPS   45 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHH-TTTTTTSCSSSCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHh-HhhcCCCCCCCCC
Confidence            4788999999999999999999999999999 8 99999987764

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=98.65  E-value=1.6e-08  Score=76.42  Aligned_cols=64  Identities=23%  Similarity=0.446  Sum_probs=56.1

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .+..|+++|++++||.|.+|++.|.....|..|+ ++|+++++       +.|.....|..|+++|.+++..
T Consensus        32 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~  102 (106)
T 2ee8_A           32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR-YIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSP  102 (106)
T ss_dssp             HHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHG-GGSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHH-HHhCCCCCeECCCcCCcccCHHHHHHHHHHhCCCCCC
Confidence            4556888899999999999999999999999999 99999884       7778889999999999877653

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=8.4e-09  Score=67.29  Aligned_cols=43  Identities=26%  Similarity=0.515  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|++++|..|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQ-RIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHH-HHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHH-HhcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987774

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1e-08  Score=66.40  Aligned_cols=42  Identities=24%  Similarity=0.423  Sum_probs=39.0

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      |.++|++++||.|..|++.|.+...|..|+ ++|+++++..+.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   42 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQ-QTHAEEKPSGPS   42 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHH-HHHTSSCSCSCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            578899999999999999999999999999 999999987765

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.64  E-value=1.4e-08  Score=66.45  Aligned_cols=43  Identities=23%  Similarity=0.476  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQ-RMHTREKPSGPS   44 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHH-GGGCCSSCCSCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=1.4e-08  Score=66.59  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQ-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHH-TTTSCSCCSSCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.64  E-value=1.5e-08  Score=71.87  Aligned_cols=56  Identities=16%  Similarity=0.110  Sum_probs=50.4

Q ss_pred             ccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           35 VIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        35 iHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .|++++||.|..|++.|.....|..|+ ++|+++++       +.|.....|..|+++|.+++.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHH-GGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHH-HHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            578999999999999999999999999 89999884       777888999999999987654

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.1e-08  Score=66.97  Aligned_cols=43  Identities=30%  Similarity=0.598  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.+...|..|+ ++|++++|..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHW-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHH-HHHSSSSCSSCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHH-HHHCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988765

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.2e-08  Score=66.65  Aligned_cols=43  Identities=26%  Similarity=0.534  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQ-RVHTGEKPSGPS   44 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHG-GGGSCCCCSCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=9.5e-09  Score=67.34  Aligned_cols=43  Identities=23%  Similarity=0.537  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..|.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHH-HHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987774

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.2e-08  Score=66.68  Aligned_cols=43  Identities=23%  Similarity=0.441  Sum_probs=40.0

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHR-RIHTGYRPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHH-HHHTCCCSSCSS
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999988775

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.5e-08  Score=66.20  Aligned_cols=43  Identities=23%  Similarity=0.504  Sum_probs=39.8

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQ-RSHSGEKPSGPS   44 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHH-HHSCCSSCCSSC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHH-HHhCCCCCCCCC
Confidence            3788999999999999999999999999999 999999987765

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.3e-08  Score=66.75  Aligned_cols=43  Identities=26%  Similarity=0.521  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHH-HHHCCCCSSCSS
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987775

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=1.5e-08  Score=66.24  Aligned_cols=43  Identities=16%  Similarity=0.337  Sum_probs=39.8

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQ-VLHMGQKNSGPS   44 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHH-HHHSCCSCCCTT
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHH-HHhCCCCCCCCC
Confidence            3788999999999999999999999999999 999999987764

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.5e-08  Score=66.49  Aligned_cols=43  Identities=21%  Similarity=0.423  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|.++|++++||.|.+|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQ-RLHTGQRPSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHH-HHHHSCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHH-HHcCCCCCCCCC
Confidence            4788999999999999999999999999999 999999987765

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.5e-08  Score=66.26  Aligned_cols=43  Identities=23%  Similarity=0.426  Sum_probs=39.9

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+.
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQ-KVHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHH-TTSCSCCSSCCS
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHH-HhhCCCCCCCCC
Confidence            3788999999999999999999999999999 999999987765

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.9e-08  Score=65.34  Aligned_cols=41  Identities=20%  Similarity=0.329  Sum_probs=38.3

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      |.++|++++||.|.+|++.|.....|..|+ ++|+++++..|
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C   43 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQ-ALHAGESGPSS   43 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHH-HHHTTSCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHH-HHHCCCCCCCC
Confidence            678999999999999999999999999999 99999988765

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.59  E-value=2.1e-08  Score=74.24  Aligned_cols=62  Identities=18%  Similarity=0.238  Sum_probs=54.7

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k   90 (283)
                      .+..|+++|++++||.|..|++.|.....|..|+ ++|+++++       +.|.....|..|+++|++++
T Consensus        23 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           23 KLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             HHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHH-HHSCCCCCEECSSSSCEESSHHHHHHHHTTCCSCC
T ss_pred             HHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHH-HHhCCCCCccCCCCCCccCCHHHHHHHHHHhcCCC
Confidence            4556888999999999999999999999999999 89998884       77788889999999998764

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.3e-08  Score=66.52  Aligned_cols=44  Identities=23%  Similarity=0.425  Sum_probs=40.3

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+..
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~~   45 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQ-RTHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHH-HHHSSCCCSSSCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHH-HHcCCCCCCCCCC
Confidence            4788999999999999999999999999999 9999999887753

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.58  E-value=2.6e-08  Score=61.86  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=33.7

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      |.++|++++||.|..|++.|.....|..|+ ++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHH-GGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHH-HHhccC
Confidence            678999999999999999999999999999 889874

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=98.58  E-value=1.2e-08  Score=73.23  Aligned_cols=60  Identities=25%  Similarity=0.399  Sum_probs=52.8

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLV   88 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~   88 (283)
                      .+..|+++|++++||.|..|++.|.+...|..|+ ++|+++++       +.|.....|..|+++|++
T Consensus        16 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           16 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHH-HHHHTCCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             hHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHH-HHhcCCCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            4556888899999999999999999999999999 89999884       778889999999999863

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.9e-08  Score=65.93  Aligned_cols=43  Identities=21%  Similarity=0.365  Sum_probs=39.7

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .|+++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~   44 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQ-RVHTGEKLSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHH-HHHHCCCCCCSC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHH-HHHcCCCCCCCC
Confidence            3788999999999999999999999999999 999999987765

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.57  E-value=2e-08  Score=72.80  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=53.2

Q ss_pred             hhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccc----c-------cccccCchhhhhhhhhhhhhhhh
Q 023366           30 LENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHERE----Q-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        30 LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGE----K-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      ..|+++|++++||.|.+|++.|.....|..|+ +.|..+    +       .+.|.....|..|+++|.+++..
T Consensus         4 ~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~-~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~   76 (86)
T 1x6h_A            4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHF-KRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGV   76 (86)
T ss_dssp             TCCSTTCCCCCCEECSSSSCEESSHHHHHHHH-HHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSC
T ss_pred             ccccceecCCCCCcCCCCCCccCCHHHHHHHH-HHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCc
Confidence            45899999999999999999999999999998 655543    4       47788899999999999887654

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=3.4e-08  Score=62.99  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=36.3

Q ss_pred             hcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           33 RGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        33 qriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      .++|++++||.|..|++.|.....|..|+ ++|++++|..+
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C   41 (41)
T 2ept_A            2 SSGSSGQRVYECQECGKSFRQKGSLTLHE-RIHTGSGPSSG   41 (41)
T ss_dssp             CSSCCCCCCEECSSSCCEESSHHHHHHHG-GGCCCCSCSCC
T ss_pred             CCccCCCCCeECCCCCCCcCCHHHHHHHH-HHhCCCCCcCC
Confidence            36899999999999999999999999999 99999987653

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=3e-08  Score=65.07  Aligned_cols=42  Identities=19%  Similarity=0.351  Sum_probs=38.9

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      ++++|++++||.|.+|++.|.+...|..|+ ++|++++++.+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHR-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHH-HHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHH-HHhCCCCCCCCC
Confidence            467899999999999999999999999999 999999988774

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=2.2e-08  Score=65.29  Aligned_cols=42  Identities=26%  Similarity=0.516  Sum_probs=38.7

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      +.++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~-~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHH-TTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHH-HHhCCCCCCCCC
Confidence            567899999999999999999999999999 999999987764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=1.8e-08  Score=62.60  Aligned_cols=36  Identities=19%  Similarity=0.451  Sum_probs=33.7

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhcccccccc
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK   70 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~   70 (283)
                      ++|++++||.|..|++.|.....|..|+ ++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHI-KTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHH-HHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHH-HHHcCCCC
Confidence            6799999999999999999999999999 99998874

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.55  E-value=3.6e-08  Score=71.04  Aligned_cols=58  Identities=26%  Similarity=0.380  Sum_probs=50.6

Q ss_pred             hcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           33 RGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        33 qriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      ...+.+++||.|.+|++.|.....|..|+ ++|+++++       +.|.....|..|+++|++++.
T Consensus        10 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p   74 (77)
T 2cot_A           10 EWQQRERRRYKCDECGKSFSHSSDLSKHR-RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP   74 (77)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCHHHHHHHH-TTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCC
T ss_pred             cCcCCCCCCEECCCCCcccCCHHHHHHHH-HHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            44567889999999999999999999999 89998884       777888999999999987764

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.54  E-value=1.9e-08  Score=70.18  Aligned_cols=54  Identities=15%  Similarity=0.332  Sum_probs=46.8

Q ss_pred             hcccCCCCCccCCCCCCccCCchhHhhhhhcc-c-ccccc-------ccccCchhhhhhhhhhh
Q 023366           33 RGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQI-H-EREQK-------KRLNQIESARGKRRVHL   87 (283)
Q Consensus        33 qriHTGEKPykC~vCGKsFss~ssLkrH~Kri-H-tGEK~-------Krf~~~~sl~~hrR~h~   87 (283)
                      +++|++++||.|..|++.|.+...|..|+ +. | +++++       +.|...+.|..|++.|.
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHY-VTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHH-HHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHH-HHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            46789999999999999999999999999 66 7 57774       77888899999998875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.53  E-value=3.8e-08  Score=70.93  Aligned_cols=58  Identities=17%  Similarity=0.253  Sum_probs=49.9

Q ss_pred             hhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccc-c-------cccccCchhhhhhhhhhh
Q 023366           30 LENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHERE-Q-------KKRLNQIESARGKRRVHL   87 (283)
Q Consensus        30 LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGE-K-------~Krf~~~~sl~~hrR~h~   87 (283)
                      ..|+++|++++||.|.+|++.|.+...|..|++..|+++ +       ++.|.....|..|++.+.
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            358899999999999999999999999999983378875 5       478888999999998754

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=4.3e-08  Score=63.97  Aligned_cols=42  Identities=26%  Similarity=0.458  Sum_probs=39.1

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      ++++|++++||.|.+|++.|.....|..|+ ++|+++++..+.
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHH-TTTSSSCCCSCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHH-HHhCCCCCCCCC
Confidence            578999999999999999999999999999 999999987765

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.50  E-value=4.4e-08  Score=59.78  Aligned_cols=35  Identities=23%  Similarity=0.449  Sum_probs=32.5

Q ss_pred             ccCCCCCccCCCCCCccCCchhHhhhhhcccccccc
Q 023366           35 VIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK   70 (283)
Q Consensus        35 iHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~   70 (283)
                      +|++++||.|..|++.|.+...|..|+ ++|++++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHI-REVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHH-HHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHH-HHHcCCCC
Confidence            588999999999999999999999999 99998764

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.50  E-value=5.3e-08  Score=59.73  Aligned_cols=35  Identities=20%  Similarity=0.506  Sum_probs=32.6

Q ss_pred             ccCCCCCccCCCCCCccCCchhHhhhhhcccccccc
Q 023366           35 VIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK   70 (283)
Q Consensus        35 iHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~   70 (283)
                      +|++++||.|..|++.|.....|..|+ ++|++++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHL-KVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHH-GGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHH-HHcCCCCC
Confidence            588999999999999999999999999 99998764

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=6.4e-08  Score=62.76  Aligned_cols=40  Identities=15%  Similarity=0.272  Sum_probs=37.1

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      ++|++++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHT-LQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHH-HHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHH-HhhCCCCCccCC
Confidence            5789999999999999999999999999 999999987764

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.48  E-value=2.1e-08  Score=68.23  Aligned_cols=42  Identities=14%  Similarity=0.316  Sum_probs=38.2

Q ss_pred             hhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccc
Q 023366           29 QLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKK   71 (283)
Q Consensus        29 ~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~K   71 (283)
                      +..|+++|++++||.|..|++.|.....|..|+ ++|++++|.
T Consensus        12 l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~kp~   53 (54)
T 1yui_A           12 TEKPRSRSQSEQPATCPICYAVIRQSRNLRRHL-ELRHFAKPG   53 (54)
T ss_dssp             CCCCHHHHTSSCCEECTTTCCEESSHHHHHHHH-HHHTTTSCC
T ss_pred             hhhHHHhcCCCCCccCCCCCcccCCHHHHHHHH-HHhccCCCC
Confidence            445888999999999999999999999999999 999998864

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.48  E-value=5.7e-08  Score=63.55  Aligned_cols=42  Identities=26%  Similarity=0.565  Sum_probs=38.7

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .+++|++++||.|.+|++.|.+...|..|+ ++|+++++..+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   44 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHW-ITHTREKPSGPS   44 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHH-THHHHCCCCSCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHH-HHcCCCCCCCCC
Confidence            467899999999999999999999999999 999999987765

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.46  E-value=3.4e-08  Score=76.09  Aligned_cols=57  Identities=16%  Similarity=0.091  Sum_probs=50.1

Q ss_pred             hhcccCCCCCccCCCCCCcc-CCchhHhhhhhcccccccc-------ccccCchhhhhh-hhhhhhhh
Q 023366           32 NRGVIKPAEPYVCGVCGRRF-YSNEKLVNHFKQIHEREQK-------KRLNQIESARGK-RRVHLVGK   90 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsF-ss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~h-rR~h~~~k   90 (283)
                      |+++|++++||.|.+|++.| .+...|..|+ ++| ++++       |.|.....|+.| +++|+.+.
T Consensus        25 ~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~-~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p   90 (96)
T 2ctd_A           25 WYLEIVDKGSVSCPTCQAVGRKTIEGLKKHM-ENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP   90 (96)
T ss_dssp             HHHHHHHTSCEECTTTCSCEESSHHHHHHHH-HHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCS
T ss_pred             HHHHhcCCCCcCCCCCCCCcccCHHHHHHHH-HHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCC
Confidence            56677888999999999999 9999999999 999 8884       778888999999 99997543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.46  E-value=7.1e-08  Score=73.87  Aligned_cols=56  Identities=21%  Similarity=0.310  Sum_probs=49.0

Q ss_pred             hcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhh-hhhhhh
Q 023366           33 RGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKR-RVHLVG   89 (283)
Q Consensus        33 qriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hr-R~h~~~   89 (283)
                      ..++++.++|.|++||+.|.+...|..|+ ++|++++|       |.|.+...|+.|. ++|..+
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHL-RLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHH-HTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhh-hhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            45677889999999999999999999999 99999994       8888999999995 678654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.45  E-value=6.3e-08  Score=65.43  Aligned_cols=49  Identities=29%  Similarity=0.324  Sum_probs=40.1

Q ss_pred             CCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhh
Q 023366           38 PAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHL   87 (283)
Q Consensus        38 GEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~   87 (283)
                      |++||.|..|++.|.+...|..|+ ++|+++++       +.|.....|..|+++|.
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHL-RTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHH-HHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHH-HHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            468999999999999999999999 89999884       67778888999988874

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=6e-08  Score=69.87  Aligned_cols=56  Identities=20%  Similarity=0.253  Sum_probs=47.9

Q ss_pred             ccCCCCCccCCCCCCccCCchhHhhhhhccccc---cc-------cccccCchhhhhhh-hhhhhhhh
Q 023366           35 VIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHER---EQ-------KKRLNQIESARGKR-RVHLVGKY   91 (283)
Q Consensus        35 iHTGEKPykC~vCGKsFss~ssLkrH~KriHtG---EK-------~Krf~~~~sl~~hr-R~h~~~k~   91 (283)
                      +|++++||.|.+|++.|.....|..|+ ++|++   ++       ++.|.....|..|+ +.|...+.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~-~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~   67 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL   67 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHH-HHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHH-HHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            489999999999999999999999999 89986   55       47888899999998 56655544

>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}

Probab=98.43  E-value=2.7e-07  Score=77.87  Aligned_cols=87  Identities=23%  Similarity=0.253  Sum_probs=67.7

Q ss_pred             hhhhhhhcCeeeeecCC-------CchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHc-CCcEEEEccC-
Q 023366          114 LADELKRAGFWVRTVSD-------KPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYR-CLKTVVVGDI-  184 (283)
Q Consensus       114 la~~L~RaG~~V~~v~d-------kp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~-~~~tvvvg~~-  184 (283)
                      +...|+..||.|.+.+-       ...++|++|-=.|.+..  ..++++||||.|+||+++++.+|++ |.+++|+|-. 
T Consensus        66 ~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a--~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~  143 (165)
T 2qip_A           66 FHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA--PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPR  143 (165)
T ss_dssp             HHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG--GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGG
T ss_pred             HHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh--ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCC
Confidence            44567778988864331       23589999987777664  5899999999999999999999997 9999999953 


Q ss_pred             -CCccccccccccccHHHH
Q 023366          185 -NDGALKRIADASFSWRDI  202 (283)
Q Consensus       185 -~~~~l~r~ad~~~sW~~v  202 (283)
                       ....|.+.||-.+..+++
T Consensus       144 ~~s~~L~~~ad~fi~l~~~  162 (165)
T 2qip_A          144 LTSQTLIDCADNFVAIDDD  162 (165)
T ss_dssp             GSCHHHHHHSSEEEECSGG
T ss_pred             cChHHHHHhCCEEEecchh
Confidence             224577778877776654

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=98.42  E-value=4.6e-08  Score=81.41  Aligned_cols=60  Identities=23%  Similarity=0.441  Sum_probs=33.6

Q ss_pred             hhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc-------cccccCchhhhhhhhhhhhhh
Q 023366           30 LENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        30 LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k   90 (283)
                      ..|+++|++++||.|..|++.|.+...|..|+ ++|++++       ++.|.....|..|+++|++++
T Consensus       122 ~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k  188 (190)
T 2i13_A          122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ-RTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK  188 (190)
T ss_dssp             HHHHHHHHCCCCEECTTTCCEESCHHHHHHHH-HHHHCCCCEECTTTCCEESSHHHHHHHHTTC----
T ss_pred             HHHHHHhCCCCCeECCCCCcccCCHHHHHHHH-HhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCCC
Confidence            34555566666666666666666666666666 5666555       255555566666666665543

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=98.40  E-value=1.3e-07  Score=68.88  Aligned_cols=59  Identities=17%  Similarity=0.413  Sum_probs=52.1

Q ss_pred             hhhhhhcccCCCCCccCC--CCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCG--VCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHL   87 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~--vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~   87 (283)
                      .+..|+++|++++||.|.  .|++.|.+...|..|+ ++|+++++       +.|.....|..|+++|+
T Consensus        22 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             HHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHH-HHHHCCCCEECSSSSCEESSHHHHHHHGGGGC
T ss_pred             HHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHH-HHcCCCCCccCCCCCcccCCHHHHHHHHHhhC
Confidence            455688999999999997  6999999999999999 99999884       77788899999999884

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.40  E-value=1.6e-07  Score=67.65  Aligned_cols=45  Identities=22%  Similarity=0.521  Sum_probs=40.7

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRL   73 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf   73 (283)
                      ++..|+++|++++||.|.+|++.|.....|..|+ ++|++++|+.|
T Consensus        33 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~~~p~~C   77 (77)
T 2cot_A           33 DLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH-RVHTGSGPSSG   77 (77)
T ss_dssp             HHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHG-GGSCCCCCCCC
T ss_pred             HHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHH-HHhCCCCCCCC
Confidence            4556889999999999999999999999999999 99999988654

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=9.1e-08  Score=59.50  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=32.4

Q ss_pred             cccCCCCCccCCCCCCccCCc-hhHhhhhhccccccc
Q 023366           34 GVIKPAEPYVCGVCGRRFYSN-EKLVNHFKQIHEREQ   69 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~-ssLkrH~KriHtGEK   69 (283)
                      ++|++++||.|..|++.|... ..|..|+ ++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~-~~H~~~k   37 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHI-WAHEGVK   37 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHH-HHHHTCC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHH-HhcCCCC
Confidence            579999999999999999999 9999999 8998864

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.38  E-value=1.4e-07  Score=69.66  Aligned_cols=60  Identities=23%  Similarity=0.467  Sum_probs=50.8

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccc--c-------cccccCchhhhhhhh-hhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHERE--Q-------KKRLNQIESARGKRR-VHLV   88 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGE--K-------~Krf~~~~sl~~hrR-~h~~   88 (283)
                      .+..|+++|++++||.|..|++.|.+...|..|+ +.|+++  +       ++.|.....|..|++ +|.+
T Consensus        22 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           22 HLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             HHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHH-HHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             HHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHH-HHhcCCCCCceECCCccchhCCHHHHHHHHHHhcCC
Confidence            4556888899999999999999999999999999 888886  5       477888889999975 7754

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=1.8e-07  Score=61.17  Aligned_cols=42  Identities=21%  Similarity=0.422  Sum_probs=38.9

Q ss_pred             hhcccCCCCCccCC--CCCCccCCchhHhhhhhcccccccccccc
Q 023366           32 NRGVIKPAEPYVCG--VCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        32 hqriHTGEKPykC~--vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      |.++|++++||.|.  .|++.|.....|..|+ ++|+++++..+.
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   46 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHR-RSHSGVKPSGPS   46 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHH-TTSCCCCSCSSC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHH-HHhCCCCCCCCC
Confidence            67899999999998  8999999999999999 999999988775

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.5e-07  Score=58.14  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +.|++++||.|..|++.|.....|..|+ ++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~~k   36 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHM-LVHGDKW   36 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHH-TTTSTTC
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHH-HHhcCCC
Confidence            3689999999999999999999999999 9998864

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=5.8e-08  Score=74.52  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcc--cccccc--------ccc--cCchhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQI--HEREQK--------KRL--NQIESARGKRRVHLVGKY   91 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~Kri--HtGEK~--------Krf--~~~~sl~~hrR~h~~~k~   91 (283)
                      ++..|.++|++++||.|..|++.|.+...|..|+ ++  |.++++        +.|  .....|..|+++|++++.
T Consensus         6 ~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~   80 (115)
T 2dmi_A            6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM-NETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV   80 (115)
T ss_dssp             CCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHH-HHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSS
T ss_pred             hhhhheeeeCCCCCEECCccCchhcCHHHHHHHH-HHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcc
Confidence            3456889999999999999999999999999999 77  666552        456  788889999999976654

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.37  E-value=1.8e-07  Score=71.18  Aligned_cols=60  Identities=27%  Similarity=0.433  Sum_probs=52.6

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLV   88 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~   88 (283)
                      .+..|+++|++++||.|.+|++.|.....|..|+ ++|+++++       +.|.....|..|++.|..
T Consensus        24 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           24 QRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIHTGIKPYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHH-TTTCCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHH-HHcCCCCCeeCCCCcchhcCHHHHHHHHHHccc
Confidence            4556788899999999999999999999999999 99999884       777888999999998854

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.5e-07  Score=58.14  Aligned_cols=35  Identities=23%  Similarity=0.469  Sum_probs=32.3

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      ++|++++||.|.+|++.|.....|..|+ ++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~~k   36 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHM-NRHSTEK   36 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHH-HHSSTTC
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHH-HHhccCC
Confidence            4689999999999999999999999999 9998864

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.36  E-value=1.5e-07  Score=59.45  Aligned_cols=36  Identities=31%  Similarity=0.700  Sum_probs=32.5

Q ss_pred             cCCCCCccCCCCCCccCCchhHhhhhhcccccccccc
Q 023366           36 IKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKR   72 (283)
Q Consensus        36 HTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Kr   72 (283)
                      |++++||.|..|++.|.....|..|+ ++|+++++..
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~   36 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHM-NVHRRDRARL   36 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHH-HTTCCSCTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHH-HHcCCCccce
Confidence            68899999999999999999999999 9999988753

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.35  E-value=1.6e-07  Score=63.33  Aligned_cols=47  Identities=17%  Similarity=0.314  Sum_probs=25.4

Q ss_pred             CccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhh
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLV   88 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~   88 (283)
                      ||.|..|++.|.....|..|+ ++|+++++       +.|.....|..|+++|..
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHH-HHTSSCCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHH-HhcCCCCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            455555555555555555555 55555542       444445555555555543

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=1e-07  Score=59.81  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=31.9

Q ss_pred             hcccCCCCCccCCCCCCccCCchhHhhh-hhcccccc
Q 023366           33 RGVIKPAEPYVCGVCGRRFYSNEKLVNH-FKQIHERE   68 (283)
Q Consensus        33 qriHTGEKPykC~vCGKsFss~ssLkrH-~KriHtGE   68 (283)
                      +++|++++||.|..|++.|.....|..| + ++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~-~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVI-QKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHH-HHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHH-HHccCc
Confidence            3579999999999999999999999999 8 888874

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=1.4e-07  Score=57.92  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      .+|++++||.|..|++.|.....|..|+ ++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~~k   36 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHL-RKHTGEK   36 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHH-HHHTCCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHH-HHccCCC
Confidence            4689999999999999999999999999 8998864

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=98.34  E-value=2.5e-07  Score=71.44  Aligned_cols=59  Identities=24%  Similarity=0.454  Sum_probs=29.7

Q ss_pred             hhhhcccCCCCCccCCC--CCCccCCchhHhhhhhcccccccc---------ccccCchhhhhhhhhhhhh
Q 023366           30 LENRGVIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQK---------KRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        30 LEhqriHTGEKPykC~v--CGKsFss~ssLkrH~KriHtGEK~---------Krf~~~~sl~~hrR~h~~~   89 (283)
                      ..|+++|++++||.|..  |++.|.+...|..|+ ++|+++++         +.|.....|..|+++|+++
T Consensus        51 ~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~  120 (124)
T 1ubd_C           51 KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA  120 (124)
T ss_dssp             HHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHH-HHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC--
T ss_pred             HHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHH-HHhCCCCceECCCCCCCCccCCHHHHHHHHHHHccc
Confidence            33455555555555543  555555555555555 55555442         2333445555555555444

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.34  E-value=1.4e-07  Score=67.48  Aligned_cols=42  Identities=31%  Similarity=0.631  Sum_probs=38.4

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK   70 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~   70 (283)
                      ++..|+++|++++||.|.+|++.|.....|..|+ ++|++++|
T Consensus        32 ~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~H~~~kp   73 (74)
T 2lce_A           32 NLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT-RIHSGEKP   73 (74)
T ss_dssp             HHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHH-HHHCCSCC
T ss_pred             HHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHH-HhcCCCCC
Confidence            4556888999999999999999999999999999 99999886

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=98.33  E-value=2e-07  Score=69.20  Aligned_cols=59  Identities=17%  Similarity=0.362  Sum_probs=51.7

Q ss_pred             hhhhhhcccCCCCCccCC--CCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCG--VCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHL   87 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~--vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~   87 (283)
                      .+..|+++|++++||.|.  .|++.|.....|..|+ ++|+++++       +.|.....|..|+++|+
T Consensus        32 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           32 HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ   99 (100)
T ss_dssp             HHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHH-HHHTSCCSCBCSSSCCBCSSHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHH-HHhCCCCCeECCCCcCccCCHHHHHHHHHHhC
Confidence            455688889999999996  6999999999999999 99999884       77788899999999985

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.33  E-value=1.8e-07  Score=60.84  Aligned_cols=41  Identities=27%  Similarity=0.518  Sum_probs=37.7

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      .+|++++||.|.+|++.|.....|..|+ ++|++++++.+..
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~~~~~~C~~   43 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHV-RSHDGSVGKSGPS   43 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHH-HHHSCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHH-HHccCCCCCCCcC
Confidence            4789999999999999999999999999 9999999887754

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=2.3e-07  Score=57.02  Aligned_cols=34  Identities=24%  Similarity=0.534  Sum_probs=31.8

Q ss_pred             ccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           35 VIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        35 iHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +|++++||.|.+|++.|.....|..|+ ++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~-~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHK-LLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHH-HHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHH-HHhcCCC
Confidence            688999999999999999999999999 9999874

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.32  E-value=5.9e-08  Score=74.31  Aligned_cols=57  Identities=23%  Similarity=0.379  Sum_probs=49.2

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc---ccccCchhhhhhhhhhhhh
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK---KRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~---Krf~~~~sl~~hrR~h~~~   89 (283)
                      +.++|++++||.|.+|++.|.....|..|+ ++|++++|   ++|.+..++..|++.|.+.
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~-~~Ht~ekp~~C~~~~~~~~~~~~~~~~~~~   75 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHL-NIHNEEFQKRAKRQERRKQLLSKQKYADGA   75 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHH-HHHHHHHHHHCCCCSCCCCCCCCCCCCCCS
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHH-HHhCCCCCcccchhhhHHHHHhhhcccccc
Confidence            577899999999999999999999999999 99999987   4555666788888888653

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=98.32  E-value=1.3e-07  Score=72.26  Aligned_cols=63  Identities=21%  Similarity=0.384  Sum_probs=53.4

Q ss_pred             hhhhhhcccCCCCCccCC--CCCCccCCchhHhhhhhccccccc-------cccccCchhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCG--VCGRRFYSNEKLVNHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~--vCGKsFss~ssLkrH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .+..|+++|++++||.|.  .|++.|.+...|..|+ ++|++++       ++.|.....|..|+++|++++.
T Consensus        23 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (119)
T 2jp9_A           23 HLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP   94 (119)
T ss_dssp             HHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHH-HHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHH-HHcCCCCCccCCccCchhCCHHHHHHHHHHhcCCCC
Confidence            445577788899999999  7999999999999999 8898887       4778888899999999987654

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.31  E-value=2.3e-07  Score=71.04  Aligned_cols=42  Identities=26%  Similarity=0.524  Sum_probs=38.2

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      ++..|+++|++++||.|.+|++.|.+...|.+|++++|++|.
T Consensus        43 ~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           43 AQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             HHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             HHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            566799999999999999999999999999999768898874

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.30  E-value=2.4e-07  Score=73.12  Aligned_cols=59  Identities=12%  Similarity=0.059  Sum_probs=51.2

Q ss_pred             hcccCCCCCccCCCCCCccCCchhHhhhhhc-cc---ccccc-------ccccCchhhhhh-hhhhhhhhhh
Q 023366           33 RGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQ-IH---EREQK-------KRLNQIESARGK-RRVHLVGKYS   92 (283)
Q Consensus        33 qriHTGEKPykC~vCGKsFss~ssLkrH~Kr-iH---tGEK~-------Krf~~~~sl~~h-rR~h~~~k~~   92 (283)
                      +...+|++||.|..|++.|.....|..|+ + +|   ++++|       +.|...++|..| +++|++++..
T Consensus        10 ~~~~~gekpy~C~~Cgk~F~~~~~L~~H~-r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy   80 (102)
T 2ghf_A           10 QQNKKVEGGYECKYCTFQTPDLNMFTFHV-DSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENF   80 (102)
T ss_dssp             TTCCCCCSSEECSSCSCEESCHHHHHHHH-HHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCE
T ss_pred             cccCCCCcCcCCCCCCCccCCHHHHHHHH-HhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCe
Confidence            56678999999999999999999999999 6 69   55664       778889999999 8999988765

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.29  E-value=3.5e-07  Score=69.58  Aligned_cols=42  Identities=21%  Similarity=0.479  Sum_probs=36.8

Q ss_pred             ccCCCCCccCCC--CCCccCCchhHhhhhhccccccccccccCc
Q 023366           35 VIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQKKRLNQI   76 (283)
Q Consensus        35 iHTGEKPykC~v--CGKsFss~ssLkrH~KriHtGEK~Krf~~~   76 (283)
                      .+++++||+|..  |+++|.+...|..|++++|++++|+.+...
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~~   64 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAEV   64 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCSC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccccc
Confidence            468999999975  999999999999997468999999887653

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=98.28  E-value=2e-07  Score=74.86  Aligned_cols=64  Identities=23%  Similarity=0.420  Sum_probs=49.1

Q ss_pred             hhhhhhcccCCCCCccCCC--CCCccCCchhHhhhhhcccccccc---------ccccCchhhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQK---------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~v--CGKsFss~ssLkrH~KriHtGEK~---------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .+..|+++|++++||.|..  |++.|.+...|..|+ ++|+++++         +.|.....|..|+++|++++..
T Consensus        77 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~-~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~  151 (155)
T 2rpc_A           77 KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK-RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSG  151 (155)
T ss_dssp             HHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHH-TTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCS
T ss_pred             HHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHH-HhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            3455777888888888887  888888888888888 88888764         4555677788888888776653

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.27  E-value=2.8e-07  Score=65.30  Aligned_cols=54  Identities=26%  Similarity=0.580  Sum_probs=48.0

Q ss_pred             hcccCCCCCccCC--CCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhh
Q 023366           33 RGVIKPAEPYVCG--VCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHL   87 (283)
Q Consensus        33 qriHTGEKPykC~--vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~   87 (283)
                      ..+|++++||.|.  .|++.|.....|..|+ ++|+++++       +.|.....|..|+++|+
T Consensus        11 ~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           11 NYVVPKMRPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             SCCCCCCCCEECSSTTBCCEESSHHHHHHHH-HHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             hccCCCCCccCCcCCCCCCccCCHHHHHHHH-HhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            6678999999997  5999999999999999 99999884       77788889999998874

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.25  E-value=3.2e-07  Score=61.38  Aligned_cols=35  Identities=29%  Similarity=0.692  Sum_probs=30.0

Q ss_pred             ccCCCCCccCCCCCCccCCchhHhhhhhc-ccccccc
Q 023366           35 VIKPAEPYVCGVCGRRFYSNEKLVNHFKQ-IHEREQK   70 (283)
Q Consensus        35 iHTGEKPykC~vCGKsFss~ssLkrH~Kr-iHtGEK~   70 (283)
                      +|++++||.|.+|++.|.....|..|+ + +|+++.+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~-~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHY-AHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHH-HHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHh-hhhcCCCCC
Confidence            589999999999999999999999999 7 9998764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.23  E-value=3.8e-07  Score=56.30  Aligned_cols=34  Identities=24%  Similarity=0.509  Sum_probs=31.5

Q ss_pred             ccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           35 VIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        35 iHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      .|++++||.|..|++.|.....|..|+ ++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~-~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHL-RIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHH-HHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHH-HHhCCCC
Confidence            578999999999999999999999999 9998864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=98.23  E-value=2.5e-07  Score=70.66  Aligned_cols=52  Identities=21%  Similarity=0.519  Sum_probs=27.0

Q ss_pred             CCCCCccCCC--CCCccCCchhHhhhhhcccccccc---------ccccCchhhhhhhhhhhhh
Q 023366           37 KPAEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQK---------KRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        37 TGEKPykC~v--CGKsFss~ssLkrH~KriHtGEK~---------Krf~~~~sl~~hrR~h~~~   89 (283)
                      ++++||.|..  |++.|.+...|..|+ ++|.++++         +.|.....|..|+++|.++
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   64 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV   64 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHH-HHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCC
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHH-HhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCC
Confidence            3445555554  555555555555555 55554442         3333445555555555444

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.22  E-value=5.4e-07  Score=61.51  Aligned_cols=48  Identities=25%  Similarity=0.540  Sum_probs=30.6

Q ss_pred             CCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhh-hhhhh
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKR-RVHLV   88 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hr-R~h~~   88 (283)
                      +||.|..|++.|.+...|..|+ ++|+++++       +.|.....|..|. ++|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHH-HTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHH-HHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            3667777777777777777776 66666653       5555666666663 55543

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=98.21  E-value=7e-07  Score=68.91  Aligned_cols=62  Identities=24%  Similarity=0.332  Sum_probs=52.4

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc---------ccccCchhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK---------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~---------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .+..|.++| +++||.|..|++.|.+...|..|+ ++|+++++         +.|.....|..|+++|.+++.
T Consensus        22 ~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   92 (124)
T 1ubd_C           22 AMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP   92 (124)
T ss_dssp             HHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHG-GGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHH-HHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCc
Confidence            445577888 889999999999999999999999 89998874         556678889999999977654

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.21  E-value=4.6e-07  Score=61.11  Aligned_cols=41  Identities=17%  Similarity=0.361  Sum_probs=36.9

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      .+..|+++|++++||.|..|++.|.+...|..|+ ++|++++
T Consensus        16 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~k   56 (57)
T 1bbo_A           16 MLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM-KSKAHSK   56 (57)
T ss_dssp             HHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHH-HSSSSCC
T ss_pred             HHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHH-HHhcccC
Confidence            4556888999999999999999999999999999 8998765

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.21  E-value=2.4e-07  Score=72.58  Aligned_cols=57  Identities=25%  Similarity=0.254  Sum_probs=48.7

Q ss_pred             hhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc-------cccccCchhhhhhhhhhhhh
Q 023366           30 LENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ-------KKRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        30 LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~   89 (283)
                      |.+...|++++||.|.+|++.|.....|..|+ ++|  ++       ++.|....+|+.|+++|++.
T Consensus        63 l~~h~~h~~~~~~~C~~C~k~f~~~~~l~~H~-~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHI-RYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHHHHHHHHHCSEECTTTCCEESSHHHHHHHH-HHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HHHHHHhCCCCCeECCCCCcccCCHhHHHHHH-HHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            33444688999999999999999999999999 888  55       58888999999999999753

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.19  E-value=6.1e-07  Score=63.39  Aligned_cols=44  Identities=11%  Similarity=0.215  Sum_probs=39.6

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKR   72 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Kr   72 (283)
                      ++..|+++|++++||.|.+|++.|.....|..|+ ++|+++++..
T Consensus        24 ~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~-~~h~~~~p~p   67 (70)
T 1x5w_A           24 ALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFHGDMSGP   67 (70)
T ss_dssp             HHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHH-HHHHSSSCCS
T ss_pred             HHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHH-HHHhCCCCCC
Confidence            4556889999999999999999999999999999 9999988754

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=5.8e-07  Score=59.20  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=31.1

Q ss_pred             cccCCCCCccCCC--CCCccCCchhHhhhhhcccccc
Q 023366           34 GVIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        34 riHTGEKPykC~v--CGKsFss~ssLkrH~KriHtGE   68 (283)
                      +.+++++||+|.+  |+++|.....|..|+ ++|+++
T Consensus         2 ~~~~gekp~~C~~~~C~k~F~~~~~L~~H~-r~Htg~   37 (38)
T 2eln_A            2 SSGSSGILLKCPTDGCDYSTPDKYKLQAHL-KVHTAL   37 (38)
T ss_dssp             CCSSCCCCEECSSSSCCCEESCHHHHHHHH-HHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCCccCCHHHHHHHH-HhcCCC
Confidence            3578999999986  999999999999999 999986

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.17  E-value=4.1e-07  Score=65.23  Aligned_cols=58  Identities=16%  Similarity=0.125  Sum_probs=49.9

Q ss_pred             hhhhhhcccCCCCCccCCC--CCCccCCchhHhhhhhccccc---c----ccccccCchhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHER---E----QKKRLNQIESARGKRRVH   86 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~v--CGKsFss~ssLkrH~KriHtG---E----K~Krf~~~~sl~~hrR~h   86 (283)
                      .+..|+++|++++||.|..  |++.|.+...|..|+ ++|++   .    =++.|.....|..|+++|
T Consensus        18 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~C~~~~~C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           18 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             HHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHH-HHHHSEECCSCSSCCCEESSHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHH-HHhCCCCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            4456888899999999988  999999999999999 88887   2    267888889999998876

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.17  E-value=8.2e-07  Score=68.01  Aligned_cols=63  Identities=17%  Similarity=0.262  Sum_probs=51.3

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcc---ccccc-------cccccCchhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQI---HEREQ-------KKRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~Kri---HtGEK-------~Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .+..|+++|++++||.|..|++.|.+...|..|+ ..   |.+++       ++.|.....|..|+++|.+++.
T Consensus        22 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (124)
T 2dlq_A           22 YLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE-ARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP   94 (124)
T ss_dssp             HHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHH-HHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCS
T ss_pred             HHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHH-hhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            3455788899999999999999999999999998 53   55665       4778888899999999876543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.16  E-value=1.1e-06  Score=64.89  Aligned_cols=56  Identities=23%  Similarity=0.363  Sum_probs=49.0

Q ss_pred             ccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           35 VIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        35 iHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .+.+++||.|..|++.|.+...|..|+ ++|.++++       +.|.....|..|+++|..++.
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   64 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP   64 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHG-GGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHH-HhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            467889999999999999999999999 89998874       777888899999999976543

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.16  E-value=9.1e-07  Score=58.46  Aligned_cols=42  Identities=19%  Similarity=0.286  Sum_probs=37.9

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccCc
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQI   76 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~~   76 (283)
                      ..|++++||.|.+|++.|.+...|..|+ ++|++++++.+...
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~~C   46 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHK-LSHSGEKPYSSGPS   46 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHG-GGSCSCCCCCSCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHH-HhcCCCCCccCCCC
Confidence            4578899999999999999999999999 99999999887653

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.15  E-value=7.9e-07  Score=54.59  Aligned_cols=32  Identities=28%  Similarity=0.649  Sum_probs=29.5

Q ss_pred             CCccCCCCCCccCCchhHhhhhhcccccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKR   72 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK~Kr   72 (283)
                      +||.|.+|++.|.....|..|+ ++|+++++.+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~-~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHI-TLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHH-HHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHH-HHhCCCCCCC
Confidence            5899999999999999999999 9999998753

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.13  E-value=4.9e-07  Score=59.94  Aligned_cols=39  Identities=18%  Similarity=0.391  Sum_probs=34.6

Q ss_pred             hhhhcccCCCCCccCC--CCCCccCCchhHhhhhhccccccc
Q 023366           30 LENRGVIKPAEPYVCG--VCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        30 LEhqriHTGEKPykC~--vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +.|..+|++++||.|.  .|++.|.....|..|+ ++|++++
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~-~~H~~ek   47 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHI-QTHLEDR   47 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHH-HHHTTTC
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHH-HHccCCC
Confidence            4566779999999996  7999999999999999 9999874

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=98.13  E-value=1.6e-06  Score=71.99  Aligned_cols=31  Identities=29%  Similarity=0.527  Sum_probs=15.4

Q ss_pred             CCCCccC--CCCCCccCCchhHhhhhhccccccc
Q 023366           38 PAEPYVC--GVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        38 GEKPykC--~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +++||.|  ..|++.|.+...|..|+ ++|++++
T Consensus       101 ~~~~~~C~~~~C~k~f~~~~~L~~H~-~~H~~~~  133 (190)
T 1tf6_A          101 KICVYVCHFENCGKAFKKHNQLKVHQ-FSHTQQL  133 (190)
T ss_dssp             TTSCCEECSSSSCEECSSHHHHHHHH-GGGSSSC
T ss_pred             CcceeeCCCCCCccccCCHHHHHHHH-HHhCCCC
Confidence            3445555  44555555555555555 4454444

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.12  E-value=1.1e-06  Score=70.24  Aligned_cols=63  Identities=19%  Similarity=0.283  Sum_probs=50.6

Q ss_pred             hhhhhhcccCCCCCccCCC--CCCccCCchhHhhhhhcccccccc---------ccccCchhhhhhh-hhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQK---------KRLNQIESARGKR-RVHLVGKY   91 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~v--CGKsFss~ssLkrH~KriHtGEK~---------Krf~~~~sl~~hr-R~h~~~k~   91 (283)
                      .+..|+++|++++||.|..  |++.|.+...|..|+ ++|+++++         +.|.....|..|+ ++|.+++.
T Consensus        54 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~  128 (155)
T 2gli_A           54 MLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL-RSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP  128 (155)
T ss_dssp             HHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHH-HHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC
T ss_pred             HHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHH-HHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            4556788888889999985  999999999999999 88888764         5566778899997 78877654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.12  E-value=8.4e-07  Score=55.30  Aligned_cols=35  Identities=31%  Similarity=0.655  Sum_probs=31.9

Q ss_pred             cCCCCCccCC--CCCCccCCchhHhhhhhccccccccc
Q 023366           36 IKPAEPYVCG--VCGRRFYSNEKLVNHFKQIHEREQKK   71 (283)
Q Consensus        36 HTGEKPykC~--vCGKsFss~ssLkrH~KriHtGEK~K   71 (283)
                      |++++||.|.  .|++.|.....|..|+ ++|+++++.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~-~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHK-HKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHH-HHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHH-HHhCCCCCC
Confidence            6889999999  5999999999999999 999998763

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.11  E-value=1.3e-06  Score=59.55  Aligned_cols=42  Identities=26%  Similarity=0.567  Sum_probs=36.6

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      .+..|+++|++++||.|..|++.|.+...|..|++++|+++.
T Consensus        17 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A           17 HLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             HHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             HHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            455688899999999999999999999999999647888764

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=98.09  E-value=6.4e-07  Score=74.42  Aligned_cols=63  Identities=25%  Similarity=0.454  Sum_probs=40.6

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .+..|.++|++++||.|..|++.|.+...|..|+ +.|.++++       +.|.....|..|+++|.+++.
T Consensus        64 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~  133 (190)
T 2i13_A           64 DLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ-RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP  133 (190)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH-HHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHhcCCCCCccCcccCCccCCHHHHHHHH-HhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            3444666666667777777777777777777776 66666653       555566667777776665543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.08  E-value=1.2e-06  Score=66.59  Aligned_cols=55  Identities=20%  Similarity=0.342  Sum_probs=48.7

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhh
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k   90 (283)
                      ..|++++||.| .|++.|.....|..|+ +.|.++++       +.|.....|..|+++|..++
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~   64 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK   64 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHH-HHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCC
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHH-HHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            46899999999 9999999999999999 89998874       77788899999999997654

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.06  E-value=1.1e-06  Score=54.98  Aligned_cols=34  Identities=21%  Similarity=0.473  Sum_probs=30.8

Q ss_pred             ccCCCCCccCCC--CCCccCCchhHhhhhhccccccc
Q 023366           35 VIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        35 iHTGEKPykC~v--CGKsFss~ssLkrH~KriHtGEK   69 (283)
                      .|++++||.|.+  |++.|.....|..|+ ++|++++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~-~~H~~ek   37 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHL-RWHTGER   37 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHH-HHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHH-HhcCCCC
Confidence            378999999994  999999999999999 9999874

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.06  E-value=8e-07  Score=67.58  Aligned_cols=50  Identities=24%  Similarity=0.300  Sum_probs=29.4

Q ss_pred             CCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhh-hhhhhhh
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRR-VHLVGKY   91 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR-~h~~~k~   91 (283)
                      +||.|.+|++.|.....|..|+ + |+++++       +.|.....|..|++ +|..+++
T Consensus        41 ~~~~C~~C~~~f~~~~~l~~H~-~-H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~   98 (107)
T 1wjp_A           41 NAAVCPYCSLRFFSPELKQEHE-S-KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM   98 (107)
T ss_dssp             HSBCCTTTCCCBSSHHHHHHHH-H-HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCC
T ss_pred             CCccCCCCCCccCCHHHHHHHH-H-cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCC
Confidence            4566666666666666666665 4 665553       55555666666665 5555444

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=1.8e-06  Score=63.78  Aligned_cols=50  Identities=24%  Similarity=0.269  Sum_probs=32.4

Q ss_pred             CccCCCCCCccCCchhHhhhhhcc-cccccc---------------ccccCchhhhhhhhhhhhhhh
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQI-HEREQK---------------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~Kri-HtGEK~---------------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .|.|..|++.|.+...|..|+ ++ |+++++               +.|.....|..|+++|++++.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~-~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   90 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHV-TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS   90 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHH-HHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC
T ss_pred             CCcccccccccCCHHHHHHHH-HHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            466777777777777777776 54 666543               555666667777777766554

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.02  E-value=2.2e-06  Score=65.58  Aligned_cols=60  Identities=20%  Similarity=0.328  Sum_probs=50.0

Q ss_pred             hhhhhc---ccCCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhh-hhhhh
Q 023366           29 QLENRG---VIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRR-VHLVG   89 (283)
Q Consensus        29 ~LEhqr---iHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR-~h~~~   89 (283)
                      +..|+.   .|++++||.|.+|++.|.+...|..|+ ++|+++++       +.|.....|..|++ .|.++
T Consensus        51 l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A           51 LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             HHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHH-HHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSCS
T ss_pred             HHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHH-HHcCCCCCccCCCccchhCCHHHHHHHHHHHCCCC
Confidence            344555   468899999999999999999999999 99999884       77888899999987 56543

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.02  E-value=2e-06  Score=49.89  Aligned_cols=30  Identities=30%  Similarity=0.820  Sum_probs=27.5

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      ++||.|..|++.|.....|..|+ ++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~-~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHL-ETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHH-HTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHH-HHhccCC
Confidence            47999999999999999999999 8998864

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.01  E-value=1.6e-06  Score=62.01  Aligned_cols=53  Identities=21%  Similarity=0.369  Sum_probs=29.5

Q ss_pred             CCCCCccCCC--CCCccCCchhHhhhhhc-ccccccc---------ccccCchhhhhhhhhhhhhh
Q 023366           37 KPAEPYVCGV--CGRRFYSNEKLVNHFKQ-IHEREQK---------KRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        37 TGEKPykC~v--CGKsFss~ssLkrH~Kr-iHtGEK~---------Krf~~~~sl~~hrR~h~~~k   90 (283)
                      ++++||.|..  |++.|.+...|..|+ + .|+++++         +.|....+|..|+++|++++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~-~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   67 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHK-KYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR   67 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHH-HHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHH-HHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCC
Confidence            4455666654  666666666666665 4 4555542         34444555666666665543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.01  E-value=2.2e-06  Score=63.03  Aligned_cols=49  Identities=20%  Similarity=0.616  Sum_probs=37.1

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhh
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLV   88 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~   88 (283)
                      ++||.|..|++.|.....|..|+ ++|+++++       +.|.....|..|+++|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHH-HHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHH-HHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            46788888888888888888888 77877763       666677778888777763

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.00  E-value=3.2e-06  Score=57.38  Aligned_cols=44  Identities=27%  Similarity=0.581  Sum_probs=37.7

Q ss_pred             hcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccCc
Q 023366           33 RGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQI   76 (283)
Q Consensus        33 qriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~~   76 (283)
                      ...|++++||.|.+|++.|.....|..|++++|+++++..+...
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C   47 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW   47 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSS
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCC
Confidence            34688999999999999999999999998239999998777554

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.99  E-value=1.7e-06  Score=61.45  Aligned_cols=41  Identities=32%  Similarity=0.598  Sum_probs=36.8

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      .+..|+++|++++||.|.+|++.|.....|..|+ ++|+++.
T Consensus        29 ~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~~~   69 (72)
T 1x6e_A           29 ILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ-RIHTSGP   69 (72)
T ss_dssp             HHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHH-HHHHSSS
T ss_pred             HHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHH-HhcCCCC
Confidence            4456888999999999999999999999999999 8998765

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=97.99  E-value=5.9e-07  Score=66.16  Aligned_cols=58  Identities=16%  Similarity=0.297  Sum_probs=47.8

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc------cccccCchhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ------KKRLNQIESARGKRRVH   86 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK------~Krf~~~~sl~~hrR~h   86 (283)
                      .+..|+++|++++||.|..|++.|.....|..|+ ++|++..      ++.|.....|..|.+.+
T Consensus        18 ~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~-~~h~~~~~~c~~C~~~f~~~~~L~~H~~~~   81 (88)
T 1llm_C           18 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQHILPILEDKVEELLSKNYHLENEVARL   81 (88)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHH-HHhCCCcchHHHHHHHHHHHhhhHHHHHHH
Confidence            3456888899999999999999999999999999 7777533      46777788888887654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.98  E-value=3.8e-06  Score=63.76  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=49.1

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc-----cccccCchhhhhhhhhhhhhhh
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ-----KKRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK-----~Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      +.++|++++||.|.+|++.|.....|..|+ ++|...-     ++.|.....|..|++ |+.++.
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~   69 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHE-RLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKK   69 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHH-HHHHHSBCCTTTCCCBSSHHHHHHHHH-HCSTGG
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHH-HHCCCCccCCCCCCccCCHHHHHHHHH-cCCCCC
Confidence            567899999999999999999999999999 8885321     588888999999986 876654

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.98  E-value=1.7e-06  Score=68.19  Aligned_cols=47  Identities=19%  Similarity=0.201  Sum_probs=40.6

Q ss_pred             hhhhhhc-cc---CCCCCccCCCCCCccCCchhHhhh-hhccccccccccccC
Q 023366           28 NQLENRG-VI---KPAEPYVCGVCGRRFYSNEKLVNH-FKQIHEREQKKRLNQ   75 (283)
Q Consensus        28 ~~LEhqr-iH---TGEKPykC~vCGKsFss~ssLkrH-~KriHtGEK~Krf~~   75 (283)
                      .+..|++ +|   ++++||.|.+||+.|.....|..| + ++|++++|+.+..
T Consensus        33 ~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~-r~Htgekpy~C~~   84 (102)
T 2ghf_A           33 MFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNL-KYHPGEENFKLTM   84 (102)
T ss_dssp             HHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHH-HTSTTCCCEEEEE
T ss_pred             HHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHH-HhcCCCCCeeCCc
Confidence            3455776 58   678999999999999999999999 7 9999999988865

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.98  E-value=3e-06  Score=49.12  Aligned_cols=29  Identities=28%  Similarity=0.687  Sum_probs=26.8

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|..|++.|.....|..|+ ++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~-~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHI-LLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHH-TGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHH-HHhcCCC
Confidence            5899999999999999999999 9998864

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=4e-07  Score=63.66  Aligned_cols=62  Identities=15%  Similarity=0.097  Sum_probs=49.3

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc-cccccCchhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ-KKRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK-~Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      ++..|+++|++++||.|..|++.|.....|.. . +.+.-+. ++.|....+|..|+++|++++.
T Consensus         5 ~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-~-~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~   67 (73)
T 2ctu_A            5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-R-KTPMCEKCRKDSCQEAALNKDEGNESGKKT   67 (73)
T ss_dssp             SCCCCCCCCCCCSEEECSSSCCEEECCCCCCC-S-SSCCCHHHHHTCSCCCSSCCCSSCCCCCCC
T ss_pred             hHHHHHHHhCCCCCeeCCcccchhCCHHHhCc-C-CCCCCCCCChhhcCHHHHHHHHHhhcCCCC
Confidence            35568999999999999999999999888876 2 2222221 5888999999999999987654

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=97.96  E-value=5e-06  Score=62.54  Aligned_cols=44  Identities=20%  Similarity=0.481  Sum_probs=39.9

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKR   72 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Kr   72 (283)
                      .+..|+++|++++||.|.+|++.|.+...|..|+ ++|+++++..
T Consensus        60 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-~~H~~~~~~~  103 (106)
T 2ee8_A           60 HLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK-TLHMQTSSPT  103 (106)
T ss_dssp             HHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHHH-HHTTSCCCCC
T ss_pred             HHHHHHHHhCCCCCeECCCcCCcccCHHHHHHHH-HHhCCCCCCc
Confidence            4566899999999999999999999999999999 9999988654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.96  E-value=3.9e-06  Score=59.90  Aligned_cols=49  Identities=14%  Similarity=0.290  Sum_probs=43.1

Q ss_pred             hhhhhhc-ccCCCCCccCCC--CCCccCCchhHhhhhhccccccccccccCch
Q 023366           28 NQLENRG-VIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQKKRLNQIE   77 (283)
Q Consensus        28 ~~LEhqr-iHTGEKPykC~v--CGKsFss~ssLkrH~KriHtGEK~Krf~~~~   77 (283)
                      ++..|++ +|++++||.|..  |++.|.+...|..|+ ++|+++++..+....
T Consensus        24 ~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~~C~   75 (79)
T 2dlk_A           24 YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM-KLHSDTRDYICEFSG   75 (79)
T ss_dssp             HHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHH-HHHHTSCCCSCCSSS
T ss_pred             HHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHH-HHhCCCCCeeCCCCC
Confidence            4566888 799999999999  999999999999999 999999988776543

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.96  E-value=1.2e-06  Score=53.35  Aligned_cols=31  Identities=19%  Similarity=0.416  Sum_probs=28.7

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQKK   71 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK~K   71 (283)
                      +||.|..|++.|.....|..|+ ++|++++|.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~-~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHI-KTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSST-TSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHH-HHHccCCCC
Confidence            5899999999999999999999 999998864

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.94  E-value=4.5e-06  Score=61.40  Aligned_cols=52  Identities=21%  Similarity=0.294  Sum_probs=46.5

Q ss_pred             CCCCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhh
Q 023366           37 KPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        37 TGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~   89 (283)
                      ++++||.|..|++.|.+...|..|+ ++|+++++       +.|.....|..|+++|..+
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   61 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS   61 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHH-HHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHH-HhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            6789999999999999999999999 89998884       7777888999999998654

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=97.93  E-value=1.7e-06  Score=58.17  Aligned_cols=38  Identities=18%  Similarity=0.268  Sum_probs=33.8

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      ++..|+++|++++||.|..|++.|.....|..|+ ++|+
T Consensus        19 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~hh   56 (57)
T 3uk3_C           19 YLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHL-ERHH   56 (57)
T ss_dssp             HHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHH-HHHC
T ss_pred             HHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHH-HHhc
Confidence            4556888999999999999999999999999999 7665

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.93  E-value=3.3e-06  Score=48.51  Aligned_cols=29  Identities=24%  Similarity=0.520  Sum_probs=26.7

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|..|++.|.....|..|+ ++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~-~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHL-KIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHH-HHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHH-HHhccCC
Confidence            5899999999999999999999 8998864

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=97.93  E-value=2.4e-06  Score=62.17  Aligned_cols=41  Identities=24%  Similarity=0.592  Sum_probs=35.8

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      .+..|.++|++++||.|..|++.|.+...|..|+ ++|++++
T Consensus        49 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~k   89 (90)
T 1a1h_A           49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHT-KIHLRQK   89 (90)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHH-GGGGC--
T ss_pred             HHHHHHHHcCCCCCccCCCCCchhCCHHHHHHHH-HHhcccC
Confidence            4556888999999999999999999999999999 9999876

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.92  E-value=6.5e-06  Score=49.13  Aligned_cols=30  Identities=30%  Similarity=0.731  Sum_probs=27.5

Q ss_pred             CCCccCC--CCCCccCCchhHhhhhhccccccc
Q 023366           39 AEPYVCG--VCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        39 EKPykC~--vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      ++||.|.  .|++.|.....|..|+ ++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~-~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHK-KSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHH-GGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHH-HHccCCC
Confidence            4799999  8999999999999999 9999874

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.92  E-value=3.3e-06  Score=67.36  Aligned_cols=99  Identities=22%  Similarity=0.228  Sum_probs=67.8

Q ss_pred             ccCCCCCccCCCC-----CCccCCchhHhhhhhcccccccc---------ccccCchhhhhhhhhhhhhhhhhhhHHHHH
Q 023366           35 VIKPAEPYVCGVC-----GRRFYSNEKLVNHFKQIHEREQK---------KRLNQIESARGKRRVHLVGKYSMKMEKYKR  100 (283)
Q Consensus        35 iHTGEKPykC~vC-----GKsFss~ssLkrH~KriHtGEK~---------Krf~~~~sl~~hrR~h~~~k~~~k~~KY~~  100 (283)
                      +|++++||.|..|     ++.|.+...|..|+ +.|+++++         +.|.....|..|+++|.+++...-      
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C------  100 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC------  100 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHT-HHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEEC------
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHHHHH-HhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeC------
Confidence            7899999998753     49999999999999 89988774         556677889999999987754321      


Q ss_pred             HHhhhc--cCCC---CCchhhhhh----hcCeeeeec--CCCchhHHHHHHHHHH
Q 023366          101 AARAIL--TPKI---GYGLADELK----RAGFWVRTV--SDKPQAADVALRNHMV  144 (283)
Q Consensus       101 AA~~~l--~pk~---gygla~~L~----RaG~~V~~v--~dkp~aaD~al~~~~~  144 (283)
                          ..  .++.   -..|..=++    ...-+.-.+  .++....-..|+.||.
T Consensus       101 ----~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~  151 (155)
T 2gli_A          101 ----EHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK  151 (155)
T ss_dssp             ----CSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHH
T ss_pred             ----CCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHH
Confidence                11  2222   122322221    123355666  7777777788998873

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.91  E-value=5.8e-06  Score=48.23  Aligned_cols=29  Identities=34%  Similarity=0.826  Sum_probs=26.5

Q ss_pred             CCccCCCCCCccCCchhHhhh-hhccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNH-FKQIHEREQ   69 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH-~KriHtGEK   69 (283)
                      +||.|..|++.|.+...|..| + ++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQ-KIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHT-TTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHH-HHccCCC
Confidence            589999999999999999999 7 8998864

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.91  E-value=4e-06  Score=48.45  Aligned_cols=29  Identities=38%  Similarity=0.828  Sum_probs=26.6

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|..|++.|.....|..|+ ++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~-~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHY-RSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHH-HHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHH-HHhcCCC
Confidence            5899999999999999999999 8998864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.90  E-value=4.4e-06  Score=61.43  Aligned_cols=37  Identities=24%  Similarity=0.479  Sum_probs=33.7

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +.+.|++++||.|.+|++.|.+...|..|+ ++|+++.
T Consensus         4 ~~~~~~~ekpy~C~~CgK~F~~~s~L~~H~-r~Htg~~   40 (66)
T 2epp_A            4 GSSGLREAGILPCGLCGKVFTDANRLRQHE-AQHGVTS   40 (66)
T ss_dssp             CSCSCCCCCCCCCTTTCCCCSCHHHHHHHH-HHHTTTS
T ss_pred             CCCCCCCccCcCCCCCCCccCCHHHHHhhh-hhhCCCc
Confidence            456789999999999999999999999999 9999865

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.89  E-value=7.1e-06  Score=65.73  Aligned_cols=46  Identities=20%  Similarity=0.461  Sum_probs=41.5

Q ss_pred             hhhhhhcccCCCCCccCCC--CCCccCCchhHhhhhhcccccccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~v--CGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .+..|+++|++++||.|..  |++.|.+...|..|+ ++|+++++..++
T Consensus       107 ~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~-~~H~~~k~~~c~  154 (155)
T 2rpc_A          107 NLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTSDKSGPSS  154 (155)
T ss_dssp             HHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSS-TTTTSCCCSCSC
T ss_pred             HHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHH-HHhcCCCCCCCC
Confidence            4566899999999999997  999999999999999 999999987664

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.88  E-value=3.1e-06  Score=48.82  Aligned_cols=29  Identities=34%  Similarity=0.803  Sum_probs=26.8

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|..|++.|.....|..|+ ++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~-~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHL-RIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHH-HHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHH-HHhcCCC
Confidence            5899999999999999999999 9998864

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=6.1e-06  Score=63.06  Aligned_cols=59  Identities=3%  Similarity=-0.095  Sum_probs=48.7

Q ss_pred             hhhhhcc--cCCCCCcc-CCCCCCcc--CCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhh
Q 023366           29 QLENRGV--IKPAEPYV-CGVCGRRF--YSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLV   88 (283)
Q Consensus        29 ~LEhqri--HTGEKPyk-C~vCGKsF--ss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~   88 (283)
                      +..|+++  |.+.+|+. |..|++.|  .....|..|+ ++|+++++       +.|.....|..|+++|..
T Consensus        35 L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           35 LTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME-GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             HHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCC-CSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             HHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHh-hccCCCcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            3446666  77777665 99999999  8999999999 99999984       778888999999988754

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.09  E-value=1.8e-06  Score=50.33  Aligned_cols=30  Identities=40%  Similarity=0.762  Sum_probs=27.3

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      ++||.|..|++.|.....|..|+ ++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~-~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHV-RIHTGEK   30 (30)
Confidence            47999999999999999999999 8998764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.87  E-value=6.2e-06  Score=47.68  Aligned_cols=29  Identities=21%  Similarity=0.472  Sum_probs=26.7

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|..|++.|.....|..|+ ++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~-~~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHI-KTKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHH-HHHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHH-HHHccCC
Confidence            5899999999999999999999 8898765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=1.2e-06  Score=66.40  Aligned_cols=43  Identities=16%  Similarity=0.272  Sum_probs=38.4

Q ss_pred             hhhhhhcccCC-CCCccCCCCCCccCCchhHhhhhhccccccccc
Q 023366           28 NQLENRGVIKP-AEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKK   71 (283)
Q Consensus        28 ~~LEhqriHTG-EKPykC~vCGKsFss~ssLkrH~KriHtGEK~K   71 (283)
                      ++..|+++|++ ++||.|.+|++.|.+...|..|+ ++|+++++.
T Consensus        40 ~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~-~~h~~~kp~   83 (98)
T 2gqj_A           40 GLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT-MAEHSAKPS   83 (98)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHH-HHHSCSCSS
T ss_pred             HHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHH-HHHcCCCCC
Confidence            45568888888 89999999999999999999999 999998864

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.86  E-value=6.2e-06  Score=58.23  Aligned_cols=53  Identities=21%  Similarity=0.481  Sum_probs=42.8

Q ss_pred             hcccCCCCCccCCC--CCCccCCchhHhhhhhcccccccc---------ccccCchhhhhhhhhh
Q 023366           33 RGVIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQK---------KRLNQIESARGKRRVH   86 (283)
Q Consensus        33 qriHTGEKPykC~v--CGKsFss~ssLkrH~KriHtGEK~---------Krf~~~~sl~~hrR~h   86 (283)
                      ...++..++|.|..  |++.|.....|..|+ ++|+++++         +.|.....|..|+++|
T Consensus         9 ~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~-~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A            9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHT-RTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCCEECSSTTTCCEESSHHHHHHHH-HHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCCccccCceeCCCCCCccccCCHHHHHHHH-HhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            34567788999988  999999999999999 89998875         4445677788887765

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.86  E-value=9.2e-06  Score=59.87  Aligned_cols=46  Identities=22%  Similarity=0.299  Sum_probs=41.3

Q ss_pred             hhhhhhcc-cCCCCC--------ccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           28 NQLENRGV-IKPAEP--------YVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        28 ~~LEhqri-HTGEKP--------ykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      ++..|+++ |++++|        |.|..|++.|.+...|..|+ ++|++++++.+.
T Consensus        40 ~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~-~~H~~~k~~~C~   94 (95)
T 2ej4_A           40 ELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RVHTGEKSGPSS   94 (95)
T ss_dssp             HHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHH-HHHHTCCCCSSC
T ss_pred             HHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHH-HhcCCCCCCCCC
Confidence            55668887 999888        99999999999999999999 999999998775

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.86  E-value=6.4e-06  Score=63.21  Aligned_cols=41  Identities=17%  Similarity=0.259  Sum_probs=36.4

Q ss_pred             hhhhhhhcccCCCCCccCCCCCCccCCchhHhhh-hhccccccc
Q 023366           27 FNQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNH-FKQIHEREQ   69 (283)
Q Consensus        27 l~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH-~KriHtGEK   69 (283)
                      .++..|+++| +++||.|.+|++.|.....|..| + ++|+++.
T Consensus        49 ~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~-~~H~~~p   90 (96)
T 2ctd_A           49 EGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVM-ANHNSLP   90 (96)
T ss_dssp             HHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHH-HHTCCCS
T ss_pred             HHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhH-HhcCCCC
Confidence            3566789999 99999999999999999999999 7 8998654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.06  E-value=2.2e-06  Score=50.01  Aligned_cols=29  Identities=31%  Similarity=0.743  Sum_probs=26.7

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|..|++.|.....|..|+ ++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~-~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHV-RQHTGEK   29 (29)
Confidence            5899999999999999999999 8998864

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=4.7e-06  Score=58.49  Aligned_cols=51  Identities=12%  Similarity=0.074  Sum_probs=40.5

Q ss_pred             cCCCCCccCCCCCCccCCchhHhhhhhccccccccc--------cccCchhhhhhhhhhhhh
Q 023366           36 IKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKK--------RLNQIESARGKRRVHLVG   89 (283)
Q Consensus        36 HTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~K--------rf~~~~sl~~hrR~h~~~   89 (283)
                      +.+++||.|..|++.|. ...|..|+ ++ ++++|.        .|...+.|..|+++|...
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~-~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQ-YQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHH-HH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHH-HH-cCCcCccCCcccCcccccHHHHHHHHHhhccc
Confidence            46788999999999999 99999998 77 777753        455567788898888543

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=97.83  E-value=4.2e-06  Score=59.12  Aligned_cols=38  Identities=21%  Similarity=0.543  Sum_probs=34.0

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      .+..|+++|++++||.|.+|++.|.....|..|+ ++|+
T Consensus        36 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~Ht   73 (73)
T 1f2i_G           36 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHT   73 (73)
T ss_dssp             HHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHH-TTCC
T ss_pred             HHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHH-HhcC
Confidence            4456888899999999999999999999999999 8875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.82  E-value=8.5e-06  Score=48.40  Aligned_cols=29  Identities=34%  Similarity=0.868  Sum_probs=26.7

Q ss_pred             CCccCC--CCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCG--VCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~--vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|.  .||+.|.....|..|+ ++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~-~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHK-RTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHH-TTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHH-HHhcCCC
Confidence            589998  9999999999999999 9999874

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.80  E-value=3.2e-06  Score=59.31  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=35.4

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccccccccCc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQI   76 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~~   76 (283)
                      .|+++|++++||.|+.||+.|.....|.    ++|+++++..|...
T Consensus         4 ~h~~~H~~~k~~~C~~C~k~F~~~~~l~----~~H~~~k~~~C~~C   45 (62)
T 1vd4_A            4 TDERDSTNRASFKCPVCSSTFTDLEANQ----LFDPMTGTFRCTFC   45 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHH----HEETTTTEEBCSSS
T ss_pred             hHHHHcCCCCCccCCCCCchhccHHHhH----hhcCCCCCEECCCC
Confidence            5889999999999999999999887775    57999997655543

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.80  E-value=7.9e-06  Score=47.19  Aligned_cols=28  Identities=36%  Similarity=0.982  Sum_probs=25.6

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhccccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtG   67 (283)
                      ++||.|..|++.|.....|..|+ ++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~-~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHY-RVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHH-TTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHH-HhcCC
Confidence            47999999999999999999999 88864

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.78  E-value=1.1e-05  Score=46.04  Aligned_cols=27  Identities=33%  Similarity=0.843  Sum_probs=23.9

Q ss_pred             CccCCCCCCccCCchhHhhhhhcccccc
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      ||.|..|++.|.....|..|+ ++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~-~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQ-RVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHG-GGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHH-HHcCCC
Confidence            689999999999999999999 889864

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=97.75  E-value=8.2e-06  Score=58.10  Aligned_cols=50  Identities=26%  Similarity=0.517  Sum_probs=44.0

Q ss_pred             CccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      ||.|..|++.|.....|..|+ ++|.++++       +.|.....|..|+++|.+++.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   57 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP   57 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHH-HHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCC
T ss_pred             CccCCCCcccccCchhHHHHH-HHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCC
Confidence            799999999999999999999 88988874       778888999999999876543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=5.9e-06  Score=59.24  Aligned_cols=44  Identities=18%  Similarity=0.272  Sum_probs=37.0

Q ss_pred             hhhhhhcccCC---CCCccCCCCCCccCCchhHhhhhhccccccccc
Q 023366           28 NQLENRGVIKP---AEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKK   71 (283)
Q Consensus        28 ~~LEhqriHTG---EKPykC~vCGKsFss~ssLkrH~KriHtGEK~K   71 (283)
                      ++..|+++|++   ++||.|.+|++.|.....|..|++..|.++++.
T Consensus        22 ~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~   68 (78)
T 2d9h_A           22 SLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA   68 (78)
T ss_dssp             HHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSC
T ss_pred             HHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            44557788885   899999999999999999999996778877654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=97.73  E-value=1.7e-05  Score=65.75  Aligned_cols=65  Identities=14%  Similarity=0.239  Sum_probs=53.7

Q ss_pred             hhhhhhcccCCCCCccCC--CCCCccCCchhHhhhhhcccc-ccc---------cccccCchhhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCG--VCGRRFYSNEKLVNHFKQIHE-REQ---------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~--vCGKsFss~ssLkrH~KriHt-GEK---------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .+..|.++|++++||.|.  .|++.|.+...|..|+++.|. +++         ++.|....+|..|+++|++++..
T Consensus        59 ~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~  135 (190)
T 1tf6_A           59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPY  135 (190)
T ss_dssp             HHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSS
T ss_pred             HHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCc
Confidence            455688899999999999  899999999999999856663 443         46778889999999999887654

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.72  E-value=1e-05  Score=46.59  Aligned_cols=27  Identities=22%  Similarity=0.655  Sum_probs=24.7

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhcccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      ++||.|..||+.|.....|..|+ ++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~-~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHL-RTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHH-HHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHH-HHcc
Confidence            47999999999999999999999 7774

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=97.72  E-value=1e-05  Score=59.80  Aligned_cols=39  Identities=28%  Similarity=0.590  Sum_probs=34.8

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtG   67 (283)
                      .+..|+++|++++||.|.+|++.|.....|..|+ ++|++
T Consensus        62 ~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~-~~H~~  100 (100)
T 2ebt_A           62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM-KRHQN  100 (100)
T ss_dssp             HHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHH-HHHCC
T ss_pred             HHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHH-HHhCC
Confidence            3456888999999999999999999999999999 88864

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.69  E-value=1.1e-05  Score=52.62  Aligned_cols=27  Identities=26%  Similarity=0.464  Sum_probs=25.5

Q ss_pred             ccCCCCCccCCCCCCccCCchhHhhhh
Q 023366           35 VIKPAEPYVCGVCGRRFYSNEKLVNHF   61 (283)
Q Consensus        35 iHTGEKPykC~vCGKsFss~ssLkrH~   61 (283)
                      .+++++||.|.+||++|.+.+.|..|+
T Consensus         2 ~~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            2 SLLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CSSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCCccCeECCCCCCccCCHhHccCcC
Confidence            468999999999999999999999997

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.68  E-value=1e-05  Score=46.94  Aligned_cols=27  Identities=30%  Similarity=0.539  Sum_probs=24.7

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhcccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      ++||.|..||+.|.....|..|+ ++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~-~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHM-RGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHH-TTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHH-HhcC
Confidence            47999999999999999999999 8774

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.61  E-value=1.8e-05  Score=54.73  Aligned_cols=39  Identities=18%  Similarity=0.385  Sum_probs=32.8

Q ss_pred             hhhhhhcc-c-CCCCCccCCCCCCccCCchhHhhhhhccccc
Q 023366           28 NQLENRGV-I-KPAEPYVCGVCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        28 ~~LEhqri-H-TGEKPykC~vCGKsFss~ssLkrH~KriHtG   67 (283)
                      ++..|+++ | ++++||.|..|++.|.+...|..|+ ++|++
T Consensus        25 ~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~-~~~H~   65 (66)
T 2drp_A           25 NFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV-KIIHK   65 (66)
T ss_dssp             HHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHH-HHHTC
T ss_pred             HHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHH-HHHcC
Confidence            34457776 7 6899999999999999999999999 76654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.58  E-value=2.7e-05  Score=55.98  Aligned_cols=46  Identities=13%  Similarity=0.223  Sum_probs=37.4

Q ss_pred             hhhhhcccCCC----CCccCCCCCCccCCchhHhhhhhccccccccccccC
Q 023366           29 QLENRGVIKPA----EPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLNQ   75 (283)
Q Consensus        29 ~LEhqriHTGE----KPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~~   75 (283)
                      +..|.++|...    +||.|..|++.|.....|..|+ ++|+++++..+..
T Consensus        31 l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~-~~h~~~~~~~~~~   80 (86)
T 1x6h_A           31 LDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA-DNCAGPDGVEGEN   80 (86)
T ss_dssp             HHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHH-HHCCCCCSCCCCC
T ss_pred             HHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHH-HHccCCCCcccCC
Confidence            44566555544    7999999999999999999999 9999988766644

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.57  E-value=1.9e-05  Score=55.31  Aligned_cols=39  Identities=21%  Similarity=0.281  Sum_probs=34.3

Q ss_pred             hhhhhcccCCCCCccCC-CCCCccCCchhHhhhhhccccccc
Q 023366           29 QLENRGVIKPAEPYVCG-VCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        29 ~LEhqriHTGEKPykC~-vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +..|+++ ++++||.|. .||+.|.....|..|+ ++|..++
T Consensus        25 L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~-~~hc~~~   64 (66)
T 2eod_A           25 IQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHL-KDSCNTA   64 (66)
T ss_dssp             HHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHH-HTTSSSC
T ss_pred             HHHHHHH-cCCcCccCCcccCcccccHHHHHHHH-HhhcccC
Confidence            4457777 999999999 9999999999999999 8887654

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.53  E-value=2.7e-05  Score=54.89  Aligned_cols=37  Identities=24%  Similarity=0.528  Sum_probs=32.7

Q ss_pred             hhhhhhcccCCCCCccCCC--CCCccCCchhHhhhhhccc
Q 023366           28 NQLENRGVIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIH   65 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~v--CGKsFss~ssLkrH~KriH   65 (283)
                      ++..|+++|++++||.|.+  |++.|.....|..|+ ++|
T Consensus        34 ~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~-~~H   72 (72)
T 2epa_A           34 HLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR-RTH   72 (72)
T ss_dssp             HHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHT-TTC
T ss_pred             HHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHh-hcC
Confidence            4556888999999999965  999999999999998 765

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.65  E-value=1.4e-05  Score=45.56  Aligned_cols=26  Identities=46%  Similarity=1.099  Sum_probs=23.8

Q ss_pred             CCccCCCCCCccCCchhHhhhhhcccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      +||.|..||+.|.....|..|+ ++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~-~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHI-RHHD   26 (26)
Confidence            5899999999999999999999 7774

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.42  E-value=5.9e-05  Score=53.90  Aligned_cols=43  Identities=12%  Similarity=0.133  Sum_probs=33.9

Q ss_pred             hhhhhhc-ccCCC-CCccCCCCCCccCCchhHhhhhhcccccccc
Q 023366           28 NQLENRG-VIKPA-EPYVCGVCGRRFYSNEKLVNHFKQIHEREQK   70 (283)
Q Consensus        28 ~~LEhqr-iHTGE-KPykC~vCGKsFss~ssLkrH~KriHtGEK~   70 (283)
                      ++..|++ .|+++ +||.|..|++.|.....|..|++..|..+.|
T Consensus        30 ~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A           30 TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             HHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            4455765 68875 8999999999999999999999445665554

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=97.41  E-value=5e-05  Score=54.12  Aligned_cols=47  Identities=28%  Similarity=0.482  Sum_probs=40.7

Q ss_pred             CccC--CCCCCccCCchhHhhhhhcccccccc---------ccccCchhhhhhhhhhhh
Q 023366           41 PYVC--GVCGRRFYSNEKLVNHFKQIHEREQK---------KRLNQIESARGKRRVHLV   88 (283)
Q Consensus        41 PykC--~vCGKsFss~ssLkrH~KriHtGEK~---------Krf~~~~sl~~hrR~h~~   88 (283)
                      ||.|  ..|++.|.....|..|+ ++|+++++         +.|.....|..|+++|++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHH-HHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCCcccCCHHHHHHHH-HHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            7999  99999999999999999 99998874         556667889999998864

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.34  E-value=5e-05  Score=55.83  Aligned_cols=61  Identities=13%  Similarity=0.030  Sum_probs=48.7

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccccccccc------Cchhhhhhhhhhhhhhh
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN------QIESARGKRRVHLVGKY   91 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~------~~~sl~~hrR~h~~~k~   91 (283)
                      ++..|+++|++++|+.|..|++.|. ...|..|.  .|.++++..+.      ....|..|.++|.+++.
T Consensus         4 ~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~--~~c~~~~~~C~~C~~~~~~~~l~~H~~~c~~~~~   70 (75)
T 2d9k_A            4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE--DYCGARTELCGNCGRNVLVKDLKTHPEVCGREGS   70 (75)
T ss_dssp             CCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH--HHHHHCEEECSSSCCEEETTGGGTHHHHBTTBSS
T ss_pred             HHHhhCcccCCCcccCCcccChHhh-HHHHHHHH--hHcCCCceEcccCCCcCcHHHHHHHHHHccCCcC
Confidence            3456899999999999999999994 89999997  68888863332      24778999988876643

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=97.34  E-value=9.4e-05  Score=53.42  Aligned_cols=52  Identities=17%  Similarity=0.369  Sum_probs=43.9

Q ss_pred             CCCccCCC--CCCccCCchhHhhhhhcccccccc---------ccccCchhhhhhhhhhhhhhh
Q 023366           39 AEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQK---------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        39 EKPykC~v--CGKsFss~ssLkrH~KriHtGEK~---------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      ..+|.|..  |++.|.....|..|+ ++|+++++         +.|.....|..|+++|.+++.
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~-~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   65 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP   65 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHH-TTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHH-HhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            46899999  999999999999999 89998774         455667889999999876544

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.25  E-value=8.3e-05  Score=42.66  Aligned_cols=27  Identities=44%  Similarity=0.779  Sum_probs=24.7

Q ss_pred             CCccCC--CCCCccCCchhHhhhhhccccc
Q 023366           40 EPYVCG--VCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        40 KPykC~--vCGKsFss~ssLkrH~KriHtG   67 (283)
                      +||.|.  .|++.|.....|..|+ ++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~-~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHK-KIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHH-GGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHH-HHhCC
Confidence            589999  9999999999999999 88864

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=97.20  E-value=0.00013  Score=56.71  Aligned_cols=38  Identities=18%  Similarity=0.328  Sum_probs=33.4

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      ++..|+++|  ++||.|..|++.|.+...|..|+ ++|++.
T Consensus        89 ~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~-~~h~~~  126 (129)
T 2wbt_A           89 SLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHV-CKKHNI  126 (129)
T ss_dssp             HHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHH-HHTTCC
T ss_pred             HHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHH-HHHCCc
Confidence            455678888  89999999999999999999999 888764

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.86  E-value=9.9e-05  Score=51.21  Aligned_cols=35  Identities=9%  Similarity=0.134  Sum_probs=32.6

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      ++||.|..|++.|.....|..|+ ++|+++++..+.
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~-~~H~~~~~~~C~   71 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDE-GNESGKKTSGPS   71 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCS-SCCCCCCCSSCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHH-HhhcCCCCCCCC
Confidence            68999999999999999999999 999999987765

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.79  E-value=0.00065  Score=45.69  Aligned_cols=27  Identities=19%  Similarity=0.059  Sum_probs=23.0

Q ss_pred             hhhhhhc-ccCCCCCccCCCCCCccCCc
Q 023366           28 NQLENRG-VIKPAEPYVCGVCGRRFYSN   54 (283)
Q Consensus        28 ~~LEhqr-iHTGEKPykC~vCGKsFss~   54 (283)
                      ++..|++ +|++++||.|.+|++.|.+.
T Consensus        27 ~L~~H~~~~H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A           27 HLNGHIKQVHTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             HHHHHHHHTSCCCCCCCSSSSCCSSCCC
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCCCCCC
Confidence            4556876 99999999999999999863

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=96.36  E-value=0.00085  Score=44.98  Aligned_cols=43  Identities=14%  Similarity=0.036  Sum_probs=37.6

Q ss_pred             CCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           48 GRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        48 GKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      ++.|.+...|..|+ ++|+++++       +.|...+.|..|+++|++++.
T Consensus         3 ~k~~~~~~~l~~h~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A            3 AKRAKHPPGTEKPR-SRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             CCCCSCSSCCCCCH-HHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             ccccCCCcchhhHH-HhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            57899999999999 99999984       777888899999999988764

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.08  E-value=0.0029  Score=41.18  Aligned_cols=22  Identities=14%  Similarity=0.181  Sum_probs=19.5

Q ss_pred             hhhhhhcccCCCCCccCCCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVCGR   49 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGK   49 (283)
                      ++..|+++|++++||.|.+|++
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           27 HLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             HHHHHGGGSCSCCCCCSCCCCC
T ss_pred             HHHHHHHhcCCCCCccCCCCCC
Confidence            5566899999999999999986

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.40  E-value=0.002  Score=47.06  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=33.8

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      ++-+|+ .|.+++|+.|..|++.|. ...|..|. ++|++++
T Consensus        31 ~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~-~~c~~~~   69 (75)
T 2d9k_A           31 KLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHP-EVCGREG   69 (75)
T ss_dssp             HHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHH-HHBTTBS
T ss_pred             HHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHH-HHccCCc
Confidence            445688 889999999999999887 59999999 8999875

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.28  E-value=0.0035  Score=51.82  Aligned_cols=31  Identities=26%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhh
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHF   61 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~   61 (283)
                      +.--.|+|++||.|..|++.|.+...|..|+
T Consensus        40 ~~ded~tGekpfyC~~C~K~F~~~~~L~~H~   70 (124)
T 1zr9_A           40 EFDPDLPGGGLHRCLACARYFIDSTNLKTHF   70 (124)
T ss_dssp             SSCSSSGGGGCSEETTTTEECSSHHHHHHHT
T ss_pred             cccccCCCCcceEcccCcchhCCHHHHHHHH
Confidence            3456689999999999999999999999998

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=95.21  E-value=0.0032  Score=43.67  Aligned_cols=28  Identities=11%  Similarity=0.157  Sum_probs=24.3

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhh
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHF   61 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~   61 (283)
                      ++|++++||.|..||+.|....++..+.
T Consensus        32 ~~H~~~k~~~C~~C~k~f~~~~~~~~~~   59 (62)
T 1vd4_A           32 LFDPMTGTFRCTFCHTEVEEDESAMPKK   59 (62)
T ss_dssp             HEETTTTEEBCSSSCCBCEECTTCSCCC
T ss_pred             hhcCCCCCEECCCCCCccccCccccccc
Confidence            7899999999999999999888776553

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.01  E-value=0.017  Score=36.65  Aligned_cols=21  Identities=5%  Similarity=-0.235  Sum_probs=18.3

Q ss_pred             hhhhhhcccCCCCCccCCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVCG   48 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCG   48 (283)
                      ++..|+++|++++||.|+.||
T Consensus        25 ~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A           25 RMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             HHHHHHHHHSCCCCCCCCCCC
T ss_pred             HHHHHHHHccCCCCCCCcCCC
Confidence            455688999999999999997

>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}

Probab=93.87  E-value=0.14  Score=41.27  Aligned_cols=63  Identities=27%  Similarity=0.532  Sum_probs=51.1

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHH-HHHHHHHcCCcEEEE
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVD-VLQEAKYRCLKTVVV  181 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~-~l~~ar~~~~~tvvv  181 (283)
                      +.+.+++.||.|+||+. ||    .|+..|.++..+.+..-+|.|.||..++. ++|+.+..|....+|
T Consensus        18 fkdiikkngfkvrtvrs-pq----elkdsieelvkkynativvvvvddkewaekairfvkslgaqvlii   81 (134)
T 2l69_A           18 FKDIIKKNGFKVRTVRS-PQ----ELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLII   81 (134)
T ss_dssp             HHHHHHHTTCEEEEECS-HH----HHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEE
T ss_pred             HHHHHHhcCceEEEecC-HH----HHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEE
Confidence            56678899999999875 77    78999998886666667788899999874 788888888876554

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.53  E-value=0.034  Score=35.27  Aligned_cols=20  Identities=15%  Similarity=0.145  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A           27 HLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHGGGTSCCCCCSCCCC
T ss_pred             HHHHHhhhcCCCCCCCCCCC
Confidence            45568999999999999988

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=93.45  E-value=0.035  Score=35.12  Aligned_cols=20  Identities=5%  Similarity=-0.080  Sum_probs=17.5

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|..|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A           27 QLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             HHHHHGGGSSSCCCSCCTTC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568999999999999988

>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}

Probab=93.44  E-value=0.26  Score=40.51  Aligned_cols=79  Identities=23%  Similarity=0.214  Sum_probs=54.9

Q ss_pred             chhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc---chHHHHHHHHHcCCcEEEEccCCCccc
Q 023366          113 GLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS---DFVDVLQEAKYRCLKTVVVGDINDGAL  189 (283)
Q Consensus       113 gla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~---~f~~~l~~ar~~~~~tvvvg~~~~~~l  189 (283)
                      .++..|.+.|..|..+.+.+.    .+...+ ..+  ..-+++|++|-.-   +...+++.|+++|+++|+|++..+..|
T Consensus        56 ~~~~~l~~~g~~~~~~~~~~~----~~~~~~-~~~--~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l  128 (187)
T 3sho_A           56 FLGHGLNSLGIRTTVLTEGGS----TLTITL-ANL--RPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPP  128 (187)
T ss_dssp             HHHHHHHHTTCCEEEECCCTH----HHHHHH-HTC--CTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHH
T ss_pred             HHHHHHHhcCCCEEEecCCch----hHHHHH-hcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcc
Confidence            355667799999998873322    111111 112  2346777777653   556677889999999999999877889


Q ss_pred             ccccccccc
Q 023366          190 KRIADASFS  198 (283)
Q Consensus       190 ~r~ad~~~s  198 (283)
                      .+.||..|.
T Consensus       129 ~~~ad~~l~  137 (187)
T 3sho_A          129 ARIADHVLV  137 (187)
T ss_dssp             HHHCSEEEE
T ss_pred             hhhCcEEEE
Confidence            999998775

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.35  E-value=0.037  Score=35.19  Aligned_cols=20  Identities=10%  Similarity=-0.067  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|..|
T Consensus        29 ~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A           29 ELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             HHHHHHTTSCCCCSCSSCCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568999999999999988

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.35  E-value=0.037  Score=35.01  Aligned_cols=20  Identities=5%  Similarity=-0.024  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A           27 HLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             HHHHHHGGGSCCCSCSSCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCC
Confidence            45568899999999999988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.22  E-value=0.04  Score=34.94  Aligned_cols=20  Identities=10%  Similarity=-0.057  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A           27 DLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHGGGGTTCCCSSTTCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568999999999999988

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=93.19  E-value=0.04  Score=35.05  Aligned_cols=20  Identities=10%  Similarity=-0.014  Sum_probs=17.5

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A           27 RLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             HHHHHHGGGCCSSCCSCCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCC
Confidence            45568999999999999988

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.19  E-value=0.04  Score=34.91  Aligned_cols=20  Identities=10%  Similarity=-0.009  Sum_probs=17.5

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A           27 HLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHTTGGGGSSCCSSCSCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCC
Confidence            45668999999999999988

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.19  E-value=0.039  Score=34.99  Aligned_cols=20  Identities=5%  Similarity=-0.090  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A           27 HLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHHTTTCCCCCSCCSCC
T ss_pred             HHHHHHHHcCCCCCCCCCCC
Confidence            45568999999999999988

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.09  E-value=0.042  Score=34.84  Aligned_cols=20  Identities=10%  Similarity=-0.002  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A           27 GLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHHTTTTTCCCCSSCCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568999999999999988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.08  E-value=0.04  Score=35.02  Aligned_cols=20  Identities=5%  Similarity=-0.042  Sum_probs=17.5

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A           27 HLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHHTTTSCSCCSSCCCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45668999999999999988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.08  E-value=0.042  Score=34.95  Aligned_cols=20  Identities=5%  Similarity=-0.167  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A           27 YLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHHTTTCCSCSSCCCCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568999999999999988

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.08  E-value=0.042  Score=34.81  Aligned_cols=20  Identities=5%  Similarity=-0.092  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A           27 YLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHHTTTCCCCCCSCCCC
T ss_pred             HHHHHHhhcCCCCCCCCCCC
Confidence            45568999999999999988

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.02  E-value=0.041  Score=34.89  Aligned_cols=20  Identities=5%  Similarity=-0.079  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A           27 SLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHHTTTSSSCCCSCCCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568999999999999988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=92.95  E-value=0.046  Score=34.55  Aligned_cols=20  Identities=15%  Similarity=0.021  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A           27 CLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHGGGGTSCCCCSTTCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568999999999999988

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.95  E-value=0.029  Score=35.70  Aligned_cols=33  Identities=15%  Similarity=0.046  Sum_probs=27.9

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|++++       ++.|...+.|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoo_A            2 SSG-SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSS   41 (46)
T ss_dssp             CCC-CCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSS
T ss_pred             CCC-CCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCC
Confidence            577 8999988       48888999999999999887653

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.93  E-value=0.044  Score=34.71  Aligned_cols=20  Identities=15%  Similarity=-0.087  Sum_probs=17.5

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A           27 NLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             HHHHHHTTSCSCCSSCCSCC
T ss_pred             HHHHHHHhhCCCCCCCCCCC
Confidence            45568999999999999988

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.93  E-value=0.041  Score=34.89  Aligned_cols=20  Identities=5%  Similarity=-0.092  Sum_probs=17.3

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A           27 QLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHHHTTSSCCSCCSCCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568899999999999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.90  E-value=0.048  Score=34.65  Aligned_cols=20  Identities=5%  Similarity=-0.102  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|..|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A           27 TLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHGGGTSCSSCSCCCCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568999999999999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.83  E-value=0.046  Score=34.51  Aligned_cols=20  Identities=5%  Similarity=-0.325  Sum_probs=17.3

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|..|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A           27 ALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             HHHHHHTTTCCSCSSCCSCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568899999999999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.82  E-value=0.05  Score=34.35  Aligned_cols=20  Identities=5%  Similarity=0.011  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A           27 ELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHHGGGCCCSCCSSCCC
T ss_pred             HHHHHHHhcCCCCCCCCCCC
Confidence            45568899999999999988

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.81  E-value=0.033  Score=34.42  Aligned_cols=32  Identities=22%  Similarity=0.019  Sum_probs=26.6

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      +|+ ++|+++++       +.|...+.|..|+++|++++.
T Consensus         1 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2ytb_A            1 GSS-GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP   39 (42)
T ss_dssp             CCC-CCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSC
T ss_pred             CCc-cccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            377 88999884       778889999999999987765

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.65  E-value=0.054  Score=34.28  Aligned_cols=20  Identities=10%  Similarity=-0.052  Sum_probs=17.4

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|..|
T Consensus        27 ~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A           27 QLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHGGGGSCCCCSCCCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCC
Confidence            45568999999999999988

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=92.63  E-value=0.042  Score=34.80  Aligned_cols=33  Identities=24%  Similarity=0.095  Sum_probs=27.6

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em0_A            2 SSG-SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPS   41 (46)
T ss_dssp             CCC-CCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCS
T ss_pred             CCc-CccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCc
Confidence            577 88999884       8888899999999999887653

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.52  E-value=0.045  Score=34.66  Aligned_cols=20  Identities=5%  Similarity=-0.107  Sum_probs=17.3

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A           27 QCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             HHHHHHHHSCCSSCCSSCCC
T ss_pred             HHHHHHHHhCCCCCCCCCCC
Confidence            45568889999999999988

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.33  E-value=0.046  Score=34.65  Aligned_cols=33  Identities=21%  Similarity=0.100  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq2_A            2 SSG-SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPS   41 (46)
T ss_dssp             CCC-CSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCC
T ss_pred             Ccc-cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            577 88999884       7888899999999999887653

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.32  E-value=0.039  Score=34.88  Aligned_cols=33  Identities=21%  Similarity=0.068  Sum_probs=27.6

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|++++       ++.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emm_A            2 SSG-SSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPS   41 (46)
T ss_dssp             CCC-SCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTT
T ss_pred             CCc-CCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCC
Confidence            477 8899988       48888999999999999887653

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=92.27  E-value=0.044  Score=34.85  Aligned_cols=33  Identities=24%  Similarity=0.115  Sum_probs=27.6

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|++++       ++.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emk_A            2 SSG-SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPS   41 (46)
T ss_dssp             CCC-CCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCS
T ss_pred             CCC-CccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            577 8899988       48888899999999999887653

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.26  E-value=0.046  Score=34.51  Aligned_cols=32  Identities=19%  Similarity=0.118  Sum_probs=27.1

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .|+ ++|++++       ++.|.....|..|+++|++++.
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytr_A            2 SSG-SSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP   40 (46)
T ss_dssp             CSS-CCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSC
T ss_pred             CCC-cCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            577 8899988       4888889999999999987765

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.23  E-value=0.048  Score=33.67  Aligned_cols=31  Identities=10%  Similarity=0.035  Sum_probs=25.7

Q ss_pred             hhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           60 HFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        60 H~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      |+ ++|+++++       +.|...+.|..|+++|++++.
T Consensus         1 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2yte_A            1 GS-SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG   38 (42)
T ss_dssp             CC-SSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSS
T ss_pred             CC-cCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            55 78888884       788889999999999987764

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.22  E-value=0.038  Score=35.04  Aligned_cols=33  Identities=15%  Similarity=-0.006  Sum_probs=27.7

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|++++       ++.|...+.|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emp_A            2 SSG-SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPS   41 (46)
T ss_dssp             CCC-SCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCC
T ss_pred             Ccc-cccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            577 8899988       48888999999999999887653

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.21  E-value=0.036  Score=35.17  Aligned_cols=33  Identities=15%  Similarity=0.056  Sum_probs=27.8

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytj_A            2 SSG-SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPS   41 (46)
T ss_dssp             CSS-CTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCS
T ss_pred             Ccc-cCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCC
Confidence            577 88999884       8888999999999999887653

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.20  E-value=0.04  Score=34.94  Aligned_cols=33  Identities=15%  Similarity=0.065  Sum_probs=27.7

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|++++       ++.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emh_A            2 SSG-SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPS   41 (46)
T ss_dssp             CCC-CSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCS
T ss_pred             CCC-CCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            577 8899988       48888899999999999877653

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.19  E-value=0.043  Score=34.66  Aligned_cols=33  Identities=18%  Similarity=0.060  Sum_probs=27.4

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.+...|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eq4_A            2 SSG-SSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPS   41 (46)
T ss_dssp             CCC-CCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCC
T ss_pred             CCc-ccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCC
Confidence            577 88999884       7888899999999999877653

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=92.17  E-value=0.053  Score=34.42  Aligned_cols=33  Identities=15%  Similarity=0.056  Sum_probs=27.4

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|++++       ++.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ely_A            2 SSG-SSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPS   41 (46)
T ss_dssp             CCC-CCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSC
T ss_pred             CCC-CCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCC
Confidence            477 8899888       48888999999999999887653

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.17  E-value=0.047  Score=34.59  Aligned_cols=33  Identities=21%  Similarity=0.059  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2enf_A            2 SSG-SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPS   41 (46)
T ss_dssp             CCC-CCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCC
T ss_pred             CCC-cCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCC
Confidence            577 88999884       7888899999999999887653

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.17  E-value=0.045  Score=34.70  Aligned_cols=33  Identities=18%  Similarity=0.020  Sum_probs=27.5

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|++++       ++.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoq_A            2 SSG-SSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPS   41 (46)
T ss_dssp             CCC-CCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSS
T ss_pred             CCC-CCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCC
Confidence            577 8899988       47888999999999999887653

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.16  E-value=0.041  Score=34.85  Aligned_cols=33  Identities=30%  Similarity=0.203  Sum_probs=27.6

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|++++       ++.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2yu8_A            2 SSG-SSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPS   41 (46)
T ss_dssp             CCC-CCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCS
T ss_pred             CcC-cCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCC
Confidence            577 8899988       48888999999999999887653

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.12  E-value=0.048  Score=34.46  Aligned_cols=33  Identities=15%  Similarity=0.001  Sum_probs=27.5

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|++++       ++.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eop_A            2 SSG-SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPS   41 (46)
T ss_dssp             CCC-CSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCS
T ss_pred             CCc-cccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            577 8899988       48888899999999999887653

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.10  E-value=0.039  Score=34.97  Aligned_cols=33  Identities=21%  Similarity=0.114  Sum_probs=27.7

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eml_A            2 SSG-SSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPS   41 (46)
T ss_dssp             CCC-CCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCS
T ss_pred             Ccc-CCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCC
Confidence            577 88999884       8888899999999999887653

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.09  E-value=0.052  Score=34.26  Aligned_cols=33  Identities=15%  Similarity=0.047  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ep1_A            2 SSG-SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPS   41 (46)
T ss_dssp             CCC-CCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCC
T ss_pred             ccc-cCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            577 88998884       7888899999999999887653

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.01  E-value=0.06  Score=34.16  Aligned_cols=33  Identities=21%  Similarity=0.145  Sum_probs=27.4

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.+...|..|+++|++++..
T Consensus         2 ~h~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emz_A            2 SSG-SSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSS   41 (46)
T ss_dssp             CCC-SCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCC-cCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            477 88998884       7888899999999999887653

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.99  E-value=0.059  Score=34.20  Aligned_cols=33  Identities=27%  Similarity=0.198  Sum_probs=27.4

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yth_A            2 SSG-SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPS   41 (46)
T ss_dssp             CCC-SCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCS
T ss_pred             Ccc-cCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCC
Confidence            577 88998884       7888899999999999887653

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.98  E-value=0.049  Score=33.98  Aligned_cols=32  Identities=9%  Similarity=-0.150  Sum_probs=27.0

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++.
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2en7_A            2 SSG-SSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG   40 (44)
T ss_dssp             CSC-CCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSS
T ss_pred             CCC-cCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCC
Confidence            577 88999884       888889999999999988765

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.98  E-value=0.046  Score=34.64  Aligned_cols=33  Identities=18%  Similarity=0.039  Sum_probs=27.7

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|++++       ++.|.+...|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emy_A            2 SSG-SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPS   41 (46)
T ss_dssp             CCC-CCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCS
T ss_pred             CCC-CCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCC
Confidence            577 8899988       48888999999999999887653

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=91.97  E-value=0.046  Score=33.83  Aligned_cols=31  Identities=16%  Similarity=0.054  Sum_probs=25.8

Q ss_pred             hhhccccccc-------cccccCchhhhhhhhhhhhhhh
Q 023366           60 HFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        60 H~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      |+ ++|++++       ++.|.+...|..|+++|++++.
T Consensus         1 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   38 (42)
T 2el5_A            1 GS-SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG   38 (42)
T ss_dssp             CC-SSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCS
T ss_pred             CC-CCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCC
Confidence            56 7888888       4888889999999999987765

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.96  E-value=0.039  Score=34.86  Aligned_cols=33  Identities=18%  Similarity=0.020  Sum_probs=27.7

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|++++       ++.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2epw_A            2 SSG-SSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHS   41 (46)
T ss_dssp             CCC-CCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCS
T ss_pred             cCc-ccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            577 8899988       48888999999999999887653

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=91.92  E-value=0.046  Score=34.66  Aligned_cols=33  Identities=15%  Similarity=0.111  Sum_probs=27.7

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ema_A            2 SSG-SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPS   41 (46)
T ss_dssp             CSC-SSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCC
T ss_pred             CCc-cCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCC
Confidence            577 88999884       8888899999999999887653

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.91  E-value=0.063  Score=34.08  Aligned_cols=33  Identities=24%  Similarity=0.116  Sum_probs=27.3

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|++++       ++.|.+...|..|+++|++++..
T Consensus         2 ~h~-~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2elz_A            2 SSG-SSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTS   41 (46)
T ss_dssp             CCC-SCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCC
T ss_pred             CCC-CCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCC
Confidence            467 8899888       48888899999999999877653

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.84  E-value=0.044  Score=34.73  Aligned_cols=33  Identities=15%  Similarity=0.062  Sum_probs=27.7

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ep3_A            2 SSG-SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPS   41 (46)
T ss_dssp             CCC-SSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCC
T ss_pred             CCC-CCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCC
Confidence            577 88999884       7888899999999999887653

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.83  E-value=0.047  Score=33.79  Aligned_cols=31  Identities=16%  Similarity=0.083  Sum_probs=26.2

Q ss_pred             hhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           60 HFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        60 H~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      |+ ++|+++++       +.|.....|..|+++|++++.
T Consensus         2 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2en2_A            2 SS-GSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP   39 (42)
T ss_dssp             CC-CCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCS
T ss_pred             CC-cccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCC
Confidence            66 78998884       888889999999999987764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.80  E-value=0.047  Score=34.70  Aligned_cols=33  Identities=21%  Similarity=0.063  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em4_A            2 SSG-SSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPS   41 (46)
T ss_dssp             CSC-CCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCC
T ss_pred             CCc-cccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCC
Confidence            477 88999884       7888899999999999887654

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.78  E-value=0.048  Score=34.56  Aligned_cols=33  Identities=21%  Similarity=0.085  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.+...|..|+++|++++..
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emi_A            2 SSG-SSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPS   41 (46)
T ss_dssp             CCC-CSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCC
T ss_pred             CCC-cccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCC
Confidence            477 88999884       7888899999999999887653

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=91.77  E-value=0.051  Score=34.52  Aligned_cols=33  Identities=18%  Similarity=0.087  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2emj_A            2 SSG-SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPS   41 (46)
T ss_dssp             CCC-CCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSS
T ss_pred             CCC-CCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            577 88999884       7888899999999999887653

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.72  E-value=0.05  Score=34.56  Aligned_cols=33  Identities=12%  Similarity=0.021  Sum_probs=27.7

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yto_A            2 SSG-SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHS   41 (46)
T ss_dssp             CCC-CCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBT
T ss_pred             Ccc-cccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCC
Confidence            577 88999884       7888899999999999887654

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.71  E-value=0.057  Score=34.09  Aligned_cols=32  Identities=13%  Similarity=0.018  Sum_probs=27.0

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++.
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2eov_A            2 SSG-SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH   40 (46)
T ss_dssp             CCC-CCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSS
T ss_pred             CCC-CCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCC
Confidence            577 88999884       788889999999999987765

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.71  E-value=0.056  Score=34.32  Aligned_cols=33  Identities=21%  Similarity=0.152  Sum_probs=27.1

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eoh_A            2 SSG-SSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSS   41 (46)
T ss_dssp             CCC-CSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSC
T ss_pred             CCC-CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCC
Confidence            367 78998884       7888899999999999887653

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.70  E-value=0.053  Score=33.82  Aligned_cols=32  Identities=16%  Similarity=0.009  Sum_probs=27.0

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++.
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eof_A            2 SSG-SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG   40 (44)
T ss_dssp             CCS-SCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSC
T ss_pred             CCc-cCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCC
Confidence            577 88999884       788889999999999987764

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.68  E-value=0.053  Score=34.00  Aligned_cols=32  Identities=16%  Similarity=0.002  Sum_probs=26.4

Q ss_pred             hhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           60 HFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        60 H~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      |+ ++|++++       ++.|...+.|..|+++|++++..
T Consensus         1 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (44)
T 2emx_A            1 GS-SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPS   39 (44)
T ss_dssp             CC-CCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSC
T ss_pred             CC-CCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            56 7888888       48888899999999999877653

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.63  E-value=0.054  Score=34.30  Aligned_cols=33  Identities=21%  Similarity=0.073  Sum_probs=27.4

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yti_A            2 SSG-SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPS   41 (46)
T ss_dssp             CCC-CCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCS
T ss_pred             CCC-cCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCC
Confidence            477 88998884       7888899999999999887653

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.62  E-value=0.05  Score=34.31  Aligned_cols=33  Identities=12%  Similarity=-0.150  Sum_probs=27.6

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|...+.|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (44)
T 2epv_A            2 SSG-SSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGP   41 (44)
T ss_dssp             CCC-CCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCC
T ss_pred             CCC-cccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCC
Confidence            477 88999884       7888899999999999887654

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.60  E-value=0.05  Score=34.11  Aligned_cols=32  Identities=13%  Similarity=-0.029  Sum_probs=27.1

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++.
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2yu5_A            2 SSG-SSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG   40 (44)
T ss_dssp             CCS-CCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCS
T ss_pred             CCc-cccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCC
Confidence            577 88999884       788889999999999987765

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.59  E-value=0.045  Score=34.78  Aligned_cols=33  Identities=18%  Similarity=0.043  Sum_probs=27.6

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2eoz_A            2 SSG-SSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLS   41 (46)
T ss_dssp             CSC-CCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSS
T ss_pred             Ccc-ccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCC
Confidence            577 88999884       7888899999999999887653

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.57  E-value=0.051  Score=34.41  Aligned_cols=33  Identities=18%  Similarity=0.119  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.+...|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytd_A            2 SSG-SSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPS   41 (46)
T ss_dssp             CCC-CCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSS
T ss_pred             CCc-cccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCC
Confidence            577 88999884       8888899999999999887653

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.56  E-value=0.058  Score=34.14  Aligned_cols=33  Identities=15%  Similarity=-0.111  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2en3_A            2 SSG-SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPS   41 (46)
T ss_dssp             CCC-CCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCS
T ss_pred             ccc-cccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCC
Confidence            577 88999884       7888899999999999887653

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.53  E-value=0.053  Score=34.24  Aligned_cols=33  Identities=18%  Similarity=0.081  Sum_probs=27.4

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   41 (46)
T 2eor_A            2 SSG-SSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPS   41 (46)
T ss_dssp             CSS-SSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCS
T ss_pred             CCC-cCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCC
Confidence            477 88998884       7888899999999999887653

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.51  E-value=0.05  Score=34.35  Aligned_cols=33  Identities=18%  Similarity=-0.019  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eow_A            2 SSG-SSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPS   41 (46)
T ss_dssp             CCC-CCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCS
T ss_pred             Ccc-CCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCC
Confidence            577 88999884       7888899999999999887653

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.50  E-value=0.045  Score=34.77  Aligned_cols=33  Identities=18%  Similarity=0.085  Sum_probs=27.4

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytp_A            2 SSG-SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPS   41 (46)
T ss_dssp             CCC-CSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCC
T ss_pred             Ccc-cCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCC
Confidence            477 88999884       7888899999999999887653

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.48  E-value=0.053  Score=34.35  Aligned_cols=33  Identities=21%  Similarity=0.088  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|...+.|..|+++|++++..
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2ytk_A            2 SSG-SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPS   41 (46)
T ss_dssp             CCC-CCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCS
T ss_pred             CCc-ccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCC
Confidence            577 88999884       8888899999999999887653

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.46  E-value=0.055  Score=34.14  Aligned_cols=33  Identities=24%  Similarity=0.131  Sum_probs=27.4

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~   41 (46)
T 2yts_A            2 SSG-SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPS   41 (46)
T ss_dssp             CCS-CCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSS
T ss_pred             CCC-CCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCc
Confidence            577 88999884       7888899999999999887653

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.41  E-value=0.058  Score=34.24  Aligned_cols=33  Identities=24%  Similarity=0.118  Sum_probs=27.3

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em6_A            2 SSG-SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPS   41 (46)
T ss_dssp             CCC-SCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCC
T ss_pred             CCc-cccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCC
Confidence            477 88998884       7788899999999999887653

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.40  E-value=0.065  Score=33.99  Aligned_cols=33  Identities=21%  Similarity=0.093  Sum_probs=27.2

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~h~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2en9_A            2 SSG-SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPS   41 (46)
T ss_dssp             CCC-SSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCC
T ss_pred             CCC-CCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCC
Confidence            467 88998884       7888899999999999887653

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.35  E-value=0.059  Score=34.11  Aligned_cols=33  Identities=15%  Similarity=0.034  Sum_probs=27.3

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq1_A            2 SSG-SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPS   41 (46)
T ss_dssp             CCC-CCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCS
T ss_pred             Ccc-cccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCC
Confidence            577 88998884       7888899999999999887653

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.32  E-value=0.059  Score=34.11  Aligned_cols=33  Identities=12%  Similarity=0.012  Sum_probs=27.3

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2emg_A            2 SSG-SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPS   41 (46)
T ss_dssp             CCC-CCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCS
T ss_pred             CCC-CCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCC
Confidence            477 88998884       7888899999999999887653

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.25  E-value=0.052  Score=34.28  Aligned_cols=33  Identities=21%  Similarity=0.124  Sum_probs=27.4

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      +|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yrj_A            2 SSG-SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPS   41 (46)
T ss_dssp             CCC-CCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSS
T ss_pred             CCc-cCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCC
Confidence            577 88999884       7888899999999999887653

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.23  E-value=0.069  Score=33.12  Aligned_cols=31  Identities=13%  Similarity=0.182  Sum_probs=25.8

Q ss_pred             hhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           60 HFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        60 H~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      |+ ++|+++++       +.|...+.|..|+++|++++.
T Consensus         2 H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2eos_A            2 SS-GSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP   39 (42)
T ss_dssp             CC-SCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSS
T ss_pred             CC-cccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            56 78888884       788889999999999987765

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.23  E-value=0.052  Score=34.36  Aligned_cols=33  Identities=21%  Similarity=0.077  Sum_probs=27.4

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|++++       ++.|....+|..|+++|++++..
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2yso_A            2 SSG-SSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNS   41 (46)
T ss_dssp             CCS-CCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCC
T ss_pred             Ccc-cccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCC
Confidence            467 8899888       48888899999999999887653

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.22  E-value=0.037  Score=35.21  Aligned_cols=20  Identities=5%  Similarity=-0.178  Sum_probs=17.2

Q ss_pred             hhhhhhcccCCCCCccCCCC
Q 023366           28 NQLENRGVIKPAEPYVCGVC   47 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vC   47 (283)
                      ++..|+++|++++||.|.+|
T Consensus        27 ~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A           27 RLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             HHHHHHTHHHHCCCCSCCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCC
Confidence            45568899999999999988

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.16  E-value=0.052  Score=34.38  Aligned_cols=33  Identities=21%  Similarity=0.102  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|....+|..|+++|++++..
T Consensus         2 ~h~-~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2en6_A            2 SSG-SSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPS   41 (46)
T ss_dssp             CCS-CCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCS
T ss_pred             CCC-CccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCC
Confidence            477 88999884       7888899999999999887653

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.12  E-value=0.076  Score=33.78  Aligned_cols=32  Identities=16%  Similarity=0.099  Sum_probs=26.7

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++.
T Consensus         2 ~h~-~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (46)
T 2ytm_A            2 SSG-SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP   40 (46)
T ss_dssp             CSC-CCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCC
T ss_pred             CCC-cCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCC
Confidence            466 78998884       888889999999999987765

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.06  E-value=0.057  Score=34.07  Aligned_cols=33  Identities=21%  Similarity=0.064  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2ytf_A            2 SSG-SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPS   41 (46)
T ss_dssp             CCC-CSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSS
T ss_pred             CCC-CCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            577 88999884       7888899999999999887653

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.04  E-value=0.061  Score=33.72  Aligned_cols=32  Identities=6%  Similarity=-0.002  Sum_probs=26.9

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++.
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2emb_A            2 SSG-SSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSG   40 (44)
T ss_dssp             CCC-SCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCC
T ss_pred             Ccc-cccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            577 88998884       788889999999999987765

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.03  E-value=0.049  Score=34.05  Aligned_cols=32  Identities=9%  Similarity=-0.006  Sum_probs=26.8

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .|+ ++|+++++       +.|.+...|..|+++|++++.
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   40 (44)
T 2eoj_A            2 SSG-SSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG   40 (44)
T ss_dssp             CSC-CSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCS
T ss_pred             CCc-cccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            477 88999884       788889999999999987654

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.97  E-value=0.078  Score=33.61  Aligned_cols=33  Identities=24%  Similarity=0.162  Sum_probs=26.9

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|++++       ++.|.+...|..|+++|++++..
T Consensus         2 ~h~-~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2enh_A            2 SSG-SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPS   41 (46)
T ss_dssp             CCC-CCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCC
T ss_pred             CCC-CCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCC
Confidence            366 7888888       48888899999999999887653

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.93  E-value=0.061  Score=34.05  Aligned_cols=33  Identities=18%  Similarity=0.066  Sum_probs=27.5

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em3_A            2 SSG-SSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPS   41 (46)
T ss_dssp             CCC-CCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCC
T ss_pred             CCC-CCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            577 88999884       7888899999999999887653

>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A

Probab=90.82  E-value=0.25  Score=40.88  Aligned_cols=47  Identities=17%  Similarity=0.277  Sum_probs=39.4

Q ss_pred             CccEEEEEeCCc---chHHHHHHHHHcCCcEEEEccCCCccccccccccc
Q 023366          151 HVECLVIVSDDS---DFVDVLQEAKYRCLKTVVVGDINDGALKRIADASF  197 (283)
Q Consensus       151 ~v~~lvlvsdd~---~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~  197 (283)
                      .-+++|++|-+-   +...+++.|+++|+++|+|.+..+..|.+.||..|
T Consensus       116 ~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l  165 (198)
T 2xbl_A          116 EGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLL  165 (198)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEE
Confidence            556888888654   56778888999999999999988788999999877

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=90.81  E-value=0.069  Score=32.91  Aligned_cols=31  Identities=16%  Similarity=-0.057  Sum_probs=25.7

Q ss_pred             hhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           60 HFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        60 H~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      |+ ++|+++++       +.|.....|..|+++|++++.
T Consensus         2 H~-~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~   39 (42)
T 2epc_A            2 SS-GSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP   39 (42)
T ss_dssp             CC-SCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCC
T ss_pred             CC-ccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCC
Confidence            55 78888884       788889999999999987764

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.64  E-value=0.081  Score=33.64  Aligned_cols=32  Identities=16%  Similarity=-0.014  Sum_probs=26.5

Q ss_pred             hhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           60 HFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        60 H~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      |+ ++|+++++       +.|.+...|..|+++|++++..
T Consensus         3 h~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eon_A            3 SG-SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPS   41 (46)
T ss_dssp             CS-SSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSC
T ss_pred             CC-CCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCC
Confidence            66 78888884       7888899999999999887653

>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3

Probab=90.63  E-value=0.17  Score=41.62  Aligned_cols=47  Identities=15%  Similarity=0.316  Sum_probs=39.5

Q ss_pred             CccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccccccccccc
Q 023366          151 HVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASF  197 (283)
Q Consensus       151 ~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~  197 (283)
                      .-+++|++|-+   .+...+++.|+++|+++|+|.+..+..|.+.||..|
T Consensus       110 ~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l  159 (188)
T 1tk9_A          110 EKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNL  159 (188)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEE
Confidence            45788888864   456778889999999999999977788999999877

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.57  E-value=0.06  Score=33.73  Aligned_cols=32  Identities=9%  Similarity=0.040  Sum_probs=27.0

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++.
T Consensus         2 ~H~-~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~   40 (44)
T 2eox_A            2 SSG-SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSG   40 (44)
T ss_dssp             CCC-CCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCC
T ss_pred             CCC-cCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCC
Confidence            577 88999884       788889999999999987764

>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3

Probab=90.53  E-value=0.45  Score=38.92  Aligned_cols=71  Identities=17%  Similarity=0.184  Sum_probs=51.7

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc---chHHHHHHHHHcCCcEEEEccCCCcccc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS---DFVDVLQEAKYRCLKTVVVGDINDGALK  190 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~---~f~~~l~~ar~~~~~tvvvg~~~~~~l~  190 (283)
                      ++..|.+.|+.+..+.+. .         + ..+  ..-+++|++|-+-   +...+++.|+++|.++|+|.+..+. |.
T Consensus        58 ~~~~l~~~g~~~~~~~~~-~---------~-~~~--~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~  123 (180)
T 1jeo_A           58 FAMRLMHLGFKSYFVGET-T---------T-PSY--EKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VV  123 (180)
T ss_dssp             HHHHHHHTTCCEEETTST-T---------C-CCC--CTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG-GG
T ss_pred             HHHHHHHcCCeEEEeCCC-c---------c-ccC--CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HH
Confidence            445667899999887653 1         0 012  2446788888654   4566778889999999999998777 99


Q ss_pred             cccccccc
Q 023366          191 RIADASFS  198 (283)
Q Consensus       191 r~ad~~~s  198 (283)
                      +.||..+.
T Consensus       124 ~~ad~~l~  131 (180)
T 1jeo_A          124 EFADLTIP  131 (180)
T ss_dssp             GGCSEEEE
T ss_pred             HhCCEEEE
Confidence            99998763

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.49  E-value=0.075  Score=33.71  Aligned_cols=33  Identities=21%  Similarity=0.061  Sum_probs=27.2

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2em2_A            2 SSG-SSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPS   41 (46)
T ss_dssp             CCC-CSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSS
T ss_pred             CCC-CCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCC
Confidence            477 88999884       7888899999999999887653

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.47  E-value=0.095  Score=33.06  Aligned_cols=32  Identities=19%  Similarity=-0.044  Sum_probs=26.8

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhh-hhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRR-VHLVGKY   91 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR-~h~~~k~   91 (283)
                      .|+ ++|++++       ++.|...+.|..|++ +|++++.
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~   41 (47)
T 2epx_A            2 SSG-SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP   41 (47)
T ss_dssp             CCC-CCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCS
T ss_pred             ccc-cccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCC
Confidence            467 8899888       488889999999999 9987765

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.44  E-value=0.1  Score=32.71  Aligned_cols=32  Identities=6%  Similarity=-0.124  Sum_probs=26.3

Q ss_pred             hhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           60 HFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        60 H~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      |+ ++|++++       ++.|.....|..|+++|++++..
T Consensus         3 h~-~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (44)
T 2eou_A            3 SG-SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGP   41 (44)
T ss_dssp             CS-CSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCC
T ss_pred             CC-CCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCC
Confidence            56 7888887       48888899999999999887653

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=90.35  E-value=0.12  Score=30.92  Aligned_cols=28  Identities=7%  Similarity=0.115  Sum_probs=23.2

Q ss_pred             hhhcccccccc-------ccccCchhhhhhhhhhhh
Q 023366           60 HFKQIHEREQK-------KRLNQIESARGKRRVHLV   88 (283)
Q Consensus        60 H~KriHtGEK~-------Krf~~~~sl~~hrR~h~~   88 (283)
                      |. ++|+++++       +.|.....|..|+++|++
T Consensus         2 H~-~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 ST-RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CS-STTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CC-CcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            66 78898884       778888899999999865

>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A

Probab=90.33  E-value=0.4  Score=39.43  Aligned_cols=72  Identities=15%  Similarity=0.128  Sum_probs=52.3

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc---chHHHHHHHHHcCCcEEEEccCCCcccc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS---DFVDVLQEAKYRCLKTVVVGDINDGALK  190 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~---~f~~~l~~ar~~~~~tvvvg~~~~~~l~  190 (283)
                      ++..|.+.|+.+..+.+. .         + ..+  ..-+++|++|-+-   +...+++.|+++|+++|+|.+..+..|.
T Consensus        55 ~~~~l~~~g~~~~~~~~~-~---------~-~~~--~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~  121 (186)
T 1m3s_A           55 FAMRLMHMGFNAHIVGEI-L---------T-PPL--AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIG  121 (186)
T ss_dssp             HHHHHHHTTCCEEETTST-T---------C-CCC--CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHH
T ss_pred             HHHHHHhcCCeEEEeCcc-c---------c-cCC--CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchH
Confidence            455677899998887653 1         1 012  2345777887654   3556788889999999999998778899


Q ss_pred             cccccccc
Q 023366          191 RIADASFS  198 (283)
Q Consensus       191 r~ad~~~s  198 (283)
                      +.||..+.
T Consensus       122 ~~ad~~l~  129 (186)
T 1m3s_A          122 KQADLIIR  129 (186)
T ss_dssp             HHCSEEEE
T ss_pred             HhCCEEEE
Confidence            99998763

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.24  E-value=0.065  Score=33.81  Aligned_cols=33  Identities=18%  Similarity=0.049  Sum_probs=27.3

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eq3_A            2 SSG-SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPS   41 (46)
T ss_dssp             CCC-CSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCC
T ss_pred             Ccc-cCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCC
Confidence            577 88999884       7788899999999999877653

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.12  E-value=0.085  Score=33.43  Aligned_cols=33  Identities=21%  Similarity=0.053  Sum_probs=26.9

Q ss_pred             hhhhccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        59 rH~KriHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      .|+ ++|++++       ++.|.....|..|+++|++++..
T Consensus         2 ~h~-~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (46)
T 2em8_A            2 SSG-SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLS   41 (46)
T ss_dssp             CCC-CCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCC
T ss_pred             CCC-CCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCC
Confidence            366 7888888       48888899999999999887653

>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}

Probab=89.97  E-value=0.77  Score=38.00  Aligned_cols=48  Identities=21%  Similarity=0.333  Sum_probs=39.0

Q ss_pred             CccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccccc---cccccc
Q 023366          151 HVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRI---ADASFS  198 (283)
Q Consensus       151 ~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~---ad~~~s  198 (283)
                      .-++||++|-+   .+-..+++.|+++|++||.|.+..+..|++.   ||..|.
T Consensus       109 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~  162 (196)
T 2yva_A          109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIR  162 (196)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEE
Confidence            45678888865   4566788888999999999999877889998   898764

>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A

Probab=89.77  E-value=0.3  Score=41.55  Aligned_cols=79  Identities=15%  Similarity=0.253  Sum_probs=53.0

Q ss_pred             hhhcCeeeeecCCCchh--------HHHHHHHHHHHHHhhcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCC
Q 023366          118 LKRAGFWVRTVSDKPQA--------ADVALRNHMVDMMDKRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDIND  186 (283)
Q Consensus       118 L~RaG~~V~~v~dkp~a--------aD~al~~~~~~~~~~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~  186 (283)
                      +.+.|+.+..+.|....        -+..++..+...+  ..-++||++|-+   .+-..+++.|+++|++||+|.+..+
T Consensus        92 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~  169 (212)
T 2i2w_A           92 ENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVG--REGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDG  169 (212)
T ss_dssp             TTSSSCSEEECCCTTCGGGGSCCCSCSSHHHHHHHHHC--CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTC
T ss_pred             ccCCCCeEEecCChHHhhHhhccCCHHHHHHHHHHhcC--CCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            45688888776643210        0111222222223  345778888864   4467788888999999999999887


Q ss_pred             cccccccccccc
Q 023366          187 GALKRIADASFS  198 (283)
Q Consensus       187 ~~l~r~ad~~~s  198 (283)
                      ..|.+.||..|.
T Consensus       170 s~La~~aD~~l~  181 (212)
T 2i2w_A          170 GKMAGTADIEIR  181 (212)
T ss_dssp             GGGTTCSSEEEE
T ss_pred             CchHHhCCEEEE
Confidence            889999998775

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.57  E-value=0.1  Score=33.00  Aligned_cols=33  Identities=15%  Similarity=0.080  Sum_probs=27.0

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhh-hhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLV-GKYS   92 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~-~k~~   92 (283)
                      .|+ ++|+++++       +.|.....|..|+++|++ ++..
T Consensus         2 ~H~-~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (46)
T 2eoy_A            2 SSG-SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSG   42 (46)
T ss_dssp             CCC-CCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTS
T ss_pred             CCc-cccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCC
Confidence            467 88998884       788889999999999987 6553

>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}

Probab=89.34  E-value=0.4  Score=40.92  Aligned_cols=49  Identities=16%  Similarity=0.333  Sum_probs=41.0

Q ss_pred             cCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccccccc---ccccc
Q 023366          150 RHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIA---DASFS  198 (283)
Q Consensus       150 ~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~a---d~~~s  198 (283)
                      ..-++||++|-+   .+-..+++.|+++|++||+|.+..+..|.+.|   |..|.
T Consensus       113 ~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~  167 (201)
T 3trj_A          113 NEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELR  167 (201)
T ss_dssp             CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEE
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEE
Confidence            355788888865   46778889999999999999998888999999   98764

>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}

Probab=87.98  E-value=0.41  Score=39.15  Aligned_cols=93  Identities=12%  Similarity=0.180  Sum_probs=61.5

Q ss_pred             HHHHHHhhhccCC--C---C--------CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhh-cCccEEEEEeCCc
Q 023366           97 KYKRAARAILTPK--I---G--------YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDK-RHVECLVIVSDDS  162 (283)
Q Consensus        97 KY~~AA~~~l~pk--~---g--------ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~-~~v~~lvlvsdd~  162 (283)
                      ...+++..+...+  +   |        ..++..|.+.|+.+..+.+...     +..    .+.. ..-+++|++|-+-
T Consensus        37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~-----~~~----~~~~~~~~d~vI~iS~sG  107 (183)
T 2xhz_A           37 NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEA-----AHG----DLGMVTPQDVVIAISNSG  107 (183)
T ss_dssp             HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHH-----HHH----TSTTCCTTCEEEEECSSS
T ss_pred             HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHH-----hhh----hhccCCCCCEEEEEeCCC
Confidence            5566666665544  1   3        2345567788999888764311     110    1111 2446788888654


Q ss_pred             ---chHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          163 ---DFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       163 ---~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                         +...+++.|+++|+++|+|.+..+..|.+.||..|.
T Consensus       108 ~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~  146 (183)
T 2xhz_A          108 ESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLC  146 (183)
T ss_dssp             CCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEE
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEE
Confidence               455667788899999999999887889999998764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.41  E-value=0.18  Score=30.02  Aligned_cols=28  Identities=4%  Similarity=-0.020  Sum_probs=22.8

Q ss_pred             cccccccc-------ccccCchhhhhhhhhhhhhh
Q 023366           63 QIHEREQK-------KRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        63 riHtGEK~-------Krf~~~~sl~~hrR~h~~~k   90 (283)
                      ++|+++++       +.|....+|..|+++|++++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            56788774       77888999999999998764

>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A

Probab=87.17  E-value=0.47  Score=39.49  Aligned_cols=48  Identities=17%  Similarity=0.326  Sum_probs=39.5

Q ss_pred             CccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccccc---cccccc
Q 023366          151 HVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRI---ADASFS  198 (283)
Q Consensus       151 ~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~---ad~~~s  198 (283)
                      .-++||++|-+   .+...+++.|+++|++||.|.+..+..|.+.   ||..|.
T Consensus       113 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~  166 (199)
T 1x92_A          113 PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIR  166 (199)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEE
Confidence            45677888865   4567788889999999999999888889999   998764

>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3

Probab=87.14  E-value=0.49  Score=39.93  Aligned_cols=72  Identities=25%  Similarity=0.298  Sum_probs=53.6

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc---chHHHHHHHHHcCCcEEEEccCCCcccc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS---DFVDVLQEAKYRCLKTVVVGDINDGALK  190 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~---~f~~~l~~ar~~~~~tvvvg~~~~~~l~  190 (283)
                      ++..|.+.|+.+..+.+. .+          ..+  ..-++||++|-.-   +...+++.|+++|+++|+|.+..+..|.
T Consensus        65 ~~~~l~~~g~~~~~~~~~-~~----------~~~--~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La  131 (200)
T 1vim_A           65 FAMRLMHLGYTVYVVGET-VT----------PRI--TDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLA  131 (200)
T ss_dssp             HHHHHHHTTCCEEETTST-TC----------CCC--CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHH
T ss_pred             HHHHHHhcCCeEEEeCCc-cc----------cCC--CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHH
Confidence            445677899999887653 10          012  2446888888654   5667788899999999999998878899


Q ss_pred             cccccccc
Q 023366          191 RIADASFS  198 (283)
Q Consensus       191 r~ad~~~s  198 (283)
                      +.||..|.
T Consensus       132 ~~ad~~l~  139 (200)
T 1vim_A          132 KMADVVMV  139 (200)
T ss_dssp             HHCSEEEE
T ss_pred             HhCCEEEE
Confidence            99998875

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=86.96  E-value=0.23  Score=28.98  Aligned_cols=26  Identities=12%  Similarity=-0.045  Sum_probs=20.9

Q ss_pred             ccccc-------cccccCchhhhhhhhhhhhhh
Q 023366           65 HEREQ-------KKRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        65 HtGEK-------~Krf~~~~sl~~hrR~h~~~k   90 (283)
                      |++++       ++.|.+.+.|..|+++|++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            56666       478888999999999998764

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.90  E-value=0.28  Score=30.76  Aligned_cols=19  Identities=5%  Similarity=-0.032  Sum_probs=15.9

Q ss_pred             hhhhhhcccCCCCCccCCC
Q 023366           28 NQLENRGVIKPAEPYVCGV   46 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~v   46 (283)
                      ++..|+++|++++||.|.+
T Consensus        27 ~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A           27 NLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             HHHHHHTTTSSCCCCCSCC
T ss_pred             HHHHHHHHhCCCCCCCCCC
Confidence            4566899999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.79  E-value=0.23  Score=31.41  Aligned_cols=30  Identities=27%  Similarity=0.143  Sum_probs=24.7

Q ss_pred             ccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           63 QIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        63 riHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      ++|++++       ++.|.....|..|+++|++++..
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   41 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPS   41 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCS
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCC
Confidence            6788877       48888899999999999887653

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=86.78  E-value=1.9  Score=36.17  Aligned_cols=72  Identities=17%  Similarity=0.211  Sum_probs=49.7

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHH-HHHHHHHHhhcC-ccEEEEEeCC-cchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVAL-RNHMVDMMDKRH-VECLVIVSDD-SDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al-~~~~~~~~~~~~-v~~lvlvsdd-~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+...+++.|+.+....... ..|... .+.+..++ ..+ ++-||+..-+ .....+++.+.+.|+..|+++...
T Consensus        20 ~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~-~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~   94 (276)
T 3ksm_A           20 LGAQKAADEAGVTLLHRSTKD-DGDIAGQIQILSYHL-SQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDL   94 (276)
T ss_dssp             HHHHHHHHHHTCEEEECCCSS-TTCHHHHHHHHHHHH-HHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHHcCCEEEEECCCC-CCCHHHHHHHHHHHH-HhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCC
Confidence            356667778899988764211 112222 23344445 678 9999998854 467889999999999999998654

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=86.74  E-value=1.9  Score=36.62  Aligned_cols=69  Identities=14%  Similarity=0.176  Sum_probs=50.6

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+..++.+.|+.+.......+..   ....+.+.|..++++-||+.+.+.  ..+++.+++.|+..|+|+...
T Consensus        27 ~gi~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~~   95 (276)
T 3jy6_A           27 KGISSILESRGYIGVLFDANADIE---REKTLLRAIGSRGFDGLILQSFSN--PQTVQEILHQQMPVVSVDREM   95 (276)
T ss_dssp             HHHHHHHHTTTCEEEEEECTTCHH---HHHHHHHHHHTTTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCHH---HHHHHHHHHHhCCCCEEEEecCCc--HHHHHHHHHCCCCEEEEeccc
Confidence            466777788899888765544322   222333334488999999998877  889999999999999998753

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=86.59  E-value=0.24  Score=31.87  Aligned_cols=33  Identities=12%  Similarity=0.255  Sum_probs=24.2

Q ss_pred             Hhhhhhcccccccc---------ccccCchhhhhhhhhhhhhh
Q 023366           57 LVNHFKQIHEREQK---------KRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        57 LkrH~KriHtGEK~---------Krf~~~~sl~~hrR~h~~~k   90 (283)
                      +..|. ..|+++++         +.|.+.+.|+.|+++|++++
T Consensus         6 ~~~~~-~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            6 SIDKY-VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGS-CEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHH-hccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            34455 57888885         55567888999999998753

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}

Probab=86.51  E-value=1.3  Score=39.28  Aligned_cols=72  Identities=10%  Similarity=0.121  Sum_probs=52.4

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhh-cCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDK-RHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~-~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+...++..|+.+..+....+..  .-.+.+..++.. .+++-||++.+......+++.+++.|+..|+|+...
T Consensus        24 ~g~~~~a~~~g~~~~~~~~~~~~~--~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~   96 (350)
T 3h75_A           24 QFMQAAARDLGLDLRILYAERDPQ--NTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPL   96 (350)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHH--HHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred             HHHHHHHHHcCCeEEEEECCCCHH--HHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCC
Confidence            356667777899888764433322  224455566733 699999999877778889999999999999998754

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.33  E-value=0.28  Score=29.24  Aligned_cols=27  Identities=4%  Similarity=-0.194  Sum_probs=21.6

Q ss_pred             cccccccc-------ccccCc-hhhhhhhhhhhhh
Q 023366           63 QIHEREQK-------KRLNQI-ESARGKRRVHLVG   89 (283)
Q Consensus        63 riHtGEK~-------Krf~~~-~sl~~hrR~h~~~   89 (283)
                      ++|+++++       +.|... +.|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            46777774       778888 8999999999765

>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}

Probab=86.22  E-value=0.4  Score=40.10  Aligned_cols=96  Identities=15%  Similarity=0.235  Sum_probs=62.5

Q ss_pred             HHHHHHHhhhccCC-----CCC--------chhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc
Q 023366           96 EKYKRAARAILTPK-----IGY--------GLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS  162 (283)
Q Consensus        96 ~KY~~AA~~~l~pk-----~gy--------gla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~  162 (283)
                      +..++++..+...+     .|.        .++..|.+.|+.+..+.+.    + .+...+ ..+  ..-+++|++|-+-
T Consensus        32 ~~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~----~-~~~~~~-~~~--~~~dvvI~iS~sG  103 (201)
T 3fxa_A           32 EALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPS----D-AVHGTL-GVL--QKEDILILISKGG  103 (201)
T ss_dssp             HHHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHH----H-HTTTGG-GGC--CTTCEEEEECSSS
T ss_pred             HHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCch----H-HHhhhh-hcC--CCCCEEEEEeCCC
Confidence            45666666666654     243        3444677889998887531    1 111000 012  2346778888654


Q ss_pred             ---chHHHHHHHHHcCCcEEEEccCCCccccccccccccH
Q 023366          163 ---DFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSW  199 (283)
Q Consensus       163 ---~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~sW  199 (283)
                         +...+++.|+++|+++|+|.+..+..|.+.||..|.-
T Consensus       104 ~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~  143 (201)
T 3fxa_A          104 NTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPV  143 (201)
T ss_dssp             CCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred             CCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence               4556678899999999999998878899999988743

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.94  E-value=0.24  Score=30.39  Aligned_cols=29  Identities=17%  Similarity=0.056  Sum_probs=23.9

Q ss_pred             ccccccc-------cccccCchhhhhhhhhhhhhhh
Q 023366           63 QIHEREQ-------KKRLNQIESARGKRRVHLVGKY   91 (283)
Q Consensus        63 riHtGEK-------~Krf~~~~sl~~hrR~h~~~k~   91 (283)
                      ++|++++       ++.|.....|..|+++|++++.
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP   38 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence            5678877       4788889999999999988764

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.88  E-value=0.34  Score=30.20  Aligned_cols=30  Identities=10%  Similarity=-0.032  Sum_probs=24.2

Q ss_pred             ccccccc-------cccccCchhhhhhhhhhhhhhhh
Q 023366           63 QIHEREQ-------KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        63 riHtGEK-------~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      ++|++++       ++.|.....|..|+++|++++..
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~   39 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSG   39 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCS
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCc
Confidence            4677777       47888899999999999887653

>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}

Probab=84.57  E-value=0.82  Score=39.36  Aligned_cols=77  Identities=18%  Similarity=0.273  Sum_probs=54.8

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC---cchHHHHHHHHH--cCCcEEEEccCCCcc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD---SDFVDVLQEAKY--RCLKTVVVGDINDGA  188 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd---~~f~~~l~~ar~--~~~~tvvvg~~~~~~  188 (283)
                      ++..|.+.|+.+..+.+.-...     ..+ ..+  ..-+++|++|-+   .+...+++.|++  +|+++|+|++..+..
T Consensus        77 ~~~~l~~lg~~~~~~~~~~~~~-----~~~-~~~--~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~  148 (220)
T 3etn_A           77 IATTFCSTGIPSVFLHPSEAQH-----GDL-GIL--QENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSP  148 (220)
T ss_dssp             HHHHHHHTTCCEEECCTTGGGB-----TGG-GGC--CTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSH
T ss_pred             HHHHHHhcCCcEEEeCCHHHHH-----hhh-ccC--CCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCCh
Confidence            5666789999999886543211     000 112  234677888765   355677889999  999999999987788


Q ss_pred             cccccccccc
Q 023366          189 LKRIADASFS  198 (283)
Q Consensus       189 l~r~ad~~~s  198 (283)
                      |.+.||..|.
T Consensus       149 La~~aD~~l~  158 (220)
T 3etn_A          149 LASESDVCLS  158 (220)
T ss_dssp             HHHHSSEEEE
T ss_pred             hHHhCCEEEE
Confidence            9999998775

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=84.40  E-value=1.8  Score=36.31  Aligned_cols=71  Identities=14%  Similarity=0.167  Sum_probs=49.7

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+...+++.|+.+.......+.   .-...+.+.|...+++-||+.+.+..-...++.+++.|+..|+|+...
T Consensus        22 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~   92 (272)
T 3o74_A           22 KQLEQGARARGYQLLIASSDDQP---DSERQLQQLFRARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRL   92 (272)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCC
Confidence            45666777889988876544332   222233333447899999998876445778899999999999998753

>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}

Probab=84.25  E-value=0.92  Score=39.25  Aligned_cols=48  Identities=17%  Similarity=0.266  Sum_probs=38.1

Q ss_pred             CccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccC-----------CCcccccccccccc
Q 023366          151 HVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDI-----------NDGALKRIADASFS  198 (283)
Q Consensus       151 ~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~-----------~~~~l~r~ad~~~s  198 (283)
                      .-++||++|-+   .+-..+++.|+++|+++|.|.+.           +++.|.+.||+.|.
T Consensus       108 ~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~  169 (243)
T 3cvj_A          108 NKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD  169 (243)
T ss_dssp             TTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence            44688888865   45677888899999999999986           33479999999874

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=84.22  E-value=1.2  Score=36.48  Aligned_cols=77  Identities=14%  Similarity=0.093  Sum_probs=48.4

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcC---CcEEEEccC-CCccc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRC---LKTVVVGDI-NDGAL  189 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~---~~tvvvg~~-~~~~l  189 (283)
                      +-..|++.|+.+-.++.++..    ..+.   .+...|++  +....-+.-..+.+.+++.|   -.+++|||+ +|-..
T Consensus        47 ~l~~L~~~g~~~~i~T~~~~~----~~~~---~~~~lgi~--~~~~~~~k~~~l~~~~~~~~~~~~~~~~vGD~~nD~~~  117 (176)
T 3mmz_A           47 GIAALRKSGLTMLILSTEQNP----VVAA---RARKLKIP--VLHGIDRKDLALKQWCEEQGIAPERVLYVGNDVNDLPC  117 (176)
T ss_dssp             HHHHHHHTTCEEEEEESSCCH----HHHH---HHHHHTCC--EEESCSCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHH
T ss_pred             HHHHHHHCCCeEEEEECcChH----HHHH---HHHHcCCe--eEeCCCChHHHHHHHHHHcCCCHHHEEEEcCCHHHHHH
Confidence            456788899999999988872    2222   34456888  33344444444445555566   468999995 33444


Q ss_pred             cccccccccH
Q 023366          190 KRIADASFSW  199 (283)
Q Consensus       190 ~r~ad~~~sW  199 (283)
                      .+.|++.+.+
T Consensus       118 ~~~ag~~v~~  127 (176)
T 3mmz_A          118 FALVGWPVAV  127 (176)
T ss_dssp             HHHSSEEEEC
T ss_pred             HHHCCCeEEC
Confidence            5667766544

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=84.13  E-value=4  Score=34.64  Aligned_cols=71  Identities=13%  Similarity=0.202  Sum_probs=50.0

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeC-CcchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSD-DSDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsd-d~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+...+++.|+.+.......+..  ...+.+..++ .++++-||+..- ...+..+++.+.+.|+..|+|+...
T Consensus        28 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~l~-~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~   99 (293)
T 3l6u_A           28 NAFKAEAKANKYEALVATSQNSRI--SEREQILEFV-HLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMI   99 (293)
T ss_dssp             HHHHHHHHHTTCEEEEEECSSCHH--HHHHHHHHHH-HTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHHcCCEEEEECCCCCHH--HHHHHHHHHH-HcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCC
Confidence            466677778899888765443322  1223333445 789999988764 4455689999999999999998754

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=84.05  E-value=0.38  Score=28.15  Aligned_cols=26  Identities=8%  Similarity=0.033  Sum_probs=20.7

Q ss_pred             ccccc-------cccccCchhhhhhhhhhhhhh
Q 023366           65 HEREQ-------KKRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        65 HtGEK-------~Krf~~~~sl~~hrR~h~~~k   90 (283)
                      |++++       ++.|.....|..|+++|++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            56666       478888999999999997654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.80  E-value=0.52  Score=27.62  Aligned_cols=21  Identities=10%  Similarity=0.240  Sum_probs=17.6

Q ss_pred             cccccCchhhhhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~~~k   90 (283)
                      ++.|.....|..|+++|++++
T Consensus        16 ~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A           16 GKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCcCchHHHHHHHHHhcCCC
Confidence            478888999999999997653

>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}

Probab=82.42  E-value=1.4  Score=37.53  Aligned_cols=73  Identities=4%  Similarity=0.017  Sum_probs=47.6

Q ss_pred             Cchhhhhhhc-CeeeeecCCCchhHHHH-HHHHHHHHHhhcCccEEEEEeCCc-chHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRA-GFWVRTVSDKPQAADVA-LRNHMVDMMDKRHVECLVIVSDDS-DFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~Ra-G~~V~~v~dkp~aaD~a-l~~~~~~~~~~~~v~~lvlvsdd~-~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+...++.. |+.+....-.....|.. ....+..++ .++++-||+++-+. .+..+++.+++.|+..|+|+...
T Consensus        29 ~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~  104 (304)
T 3gbv_A           29 KGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVI-EEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQI  104 (304)
T ss_dssp             HHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHH-TTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCC
T ss_pred             HHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHH-hcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3555666666 77766542111111222 223333345 89999999988766 47889999999999999998643

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.13  E-value=0.48  Score=27.95  Aligned_cols=26  Identities=8%  Similarity=-0.057  Sum_probs=20.5

Q ss_pred             cccccc-------cccccCchhhhhhhhhhhhh
Q 023366           64 IHEREQ-------KKRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        64 iHtGEK-------~Krf~~~~sl~~hrR~h~~~   89 (283)
                      .|++++       ++.|...+.|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            466666       47788889999999999765

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=82.12  E-value=2.9  Score=36.20  Aligned_cols=71  Identities=20%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc-chHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS-DFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~-~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+...++..|+.+........   ......+.+.|..++++-||+..-+. .+.++++.+++.|+..|+|+...
T Consensus        22 ~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~   93 (313)
T 3m9w_A           22 DIFVKKAESLGAKVFVQSANGN---EETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMI   93 (313)
T ss_dssp             HHHHHHHHHTSCEEEEEECTTC---HHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCC
T ss_pred             HHHHHHHHHcCCEEEEECCCCC---HHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcC
Confidence            4667777788988886544322   22222233333378999999887655 46789999999999999998754

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=82.01  E-value=3.9  Score=34.70  Aligned_cols=70  Identities=13%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+..++.+.|+.+........   ......+.+.|...+++-||+++.+.+ ..+++.+++.|+..|+|+...
T Consensus        33 ~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~~  102 (292)
T 3k4h_A           33 RGISSFAHVEGYALYMSTGETE---EEIFNGVVKMVQGRQIGGIILLYSREN-DRIIQYLHEQNFPFVLIGKPY  102 (292)
T ss_dssp             HHHHHHHHHTTCEEEECCCCSH---HHHHHHHHHHHHTTCCCEEEESCCBTT-CHHHHHHHHTTCCEEEESCCS
T ss_pred             HHHHHHHHHcCCEEEEEeCCCC---HHHHHHHHHHHHcCCCCEEEEeCCCCC-hHHHHHHHHCCCCEEEECCCC
Confidence            4677778889999887655443   333344444455889999998764433 378899999999999998753

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=81.91  E-value=4.2  Score=34.43  Aligned_cols=71  Identities=11%  Similarity=0.220  Sum_probs=50.1

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc----chHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS----DFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~----~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+..++++.|+.+..........  ...+.+..++ .++++-||+.+-++    ...++++.+++.|+..|+|+...
T Consensus        35 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~  109 (298)
T 3tb6_A           35 RGIESYLSEQGYSMLLTSTNNNPD--NERRGLENLL-SQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASY  109 (298)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHH--HHHHHHHHHH-HTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCChH--HHHHHHHHHH-HCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCc
Confidence            467777888999988765443321  1223333345 88999999987654    34578899999999999998653

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.75  E-value=0.51  Score=27.66  Aligned_cols=26  Identities=8%  Similarity=-0.161  Sum_probs=20.7

Q ss_pred             cccccc-------cccccCchhhhhhhhhhhhh
Q 023366           64 IHEREQ-------KKRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        64 iHtGEK-------~Krf~~~~sl~~hrR~h~~~   89 (283)
                      .|++++       ++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            566666       47788889999999999765

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=81.67  E-value=3.7  Score=34.82  Aligned_cols=71  Identities=8%  Similarity=0.069  Sum_probs=50.1

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC-cchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD-SDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd-~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+...+++.|+.+...........  -...+..++ ..+++-||+..-+ .....+++.+.+.|+..|+++...
T Consensus        25 ~gi~~~a~~~g~~~~~~~~~~~~~~--~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~   96 (291)
T 3l49_A           25 QAQIAEIERLGGTAIALDAGRNDQT--QVSQIQTLI-AQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTAT   96 (291)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHHH--HHHHHHHHH-HHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred             HHHHHHHHHcCCEEEEEcCCCCHHH--HHHHHHHHH-HcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCC
Confidence            4666777788999887644332211  122333345 7899999988776 457789999999999999997654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=81.04  E-value=0.51  Score=28.55  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=19.7

Q ss_pred             cccccCchhhhhhhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHLVGKYS   92 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~~~k~~   92 (283)
                      ++.|...+.|..|+++|++++..
T Consensus        13 ~k~f~~~~~L~~H~~~H~~~k~~   35 (39)
T 1njq_A           13 KREFRSAQALGGHMNVHRRDRAR   35 (39)
T ss_dssp             CCEESSHHHHHHHHHTTCCSCTT
T ss_pred             CcccCCHHHHHHHHHHcCCCccc
Confidence            47888899999999999987764

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=80.83  E-value=4.8  Score=34.63  Aligned_cols=70  Identities=14%  Similarity=0.305  Sum_probs=49.4

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+..++++.|+.+-.......   ......+.+.|..++|+-||+++.+.. ..+++.+++.|+..|+|+...
T Consensus        32 ~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~  101 (295)
T 3hcw_A           32 LGISETCNQHGYGTQTTVSNNM---NDLMDEVYKMIKQRMVDAFILLYSKEN-DPIKQMLIDESMPFIVIGKPT  101 (295)
T ss_dssp             HHHHHHHHTTTCEEEECCCCSH---HHHHHHHHHHHHTTCCSEEEESCCCTT-CHHHHHHHHTTCCEEEESCCC
T ss_pred             HHHHHHHHHCCCEEEEEcCCCC---hHHHHHHHHHHHhCCcCEEEEcCcccC-hHHHHHHHhCCCCEEEECCCC
Confidence            4667778889999877554332   333344455555899999999864432 367888899999999998653

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=80.77  E-value=3.8  Score=35.36  Aligned_cols=70  Identities=13%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+...+++.|+.+........   ......+.+.|..++++-||+++-+.+ ...++.+++.|+..|+|+...
T Consensus        47 ~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~i~~~~  116 (305)
T 3huu_A           47 NGINQACNVRGYSTRMTVSENS---GDLYHEVKTMIQSKSVDGFILLYSLKD-DPIEHLLNEFKVPYLIVGKSL  116 (305)
T ss_dssp             HHHHHHHHHHTCEEEECCCSSH---HHHHHHHHHHHHTTCCSEEEESSCBTT-CHHHHHHHHTTCCEEEESCCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCC---hHHHHHHHHHHHhCCCCEEEEeCCcCC-cHHHHHHHHcCCCEEEECCCC
Confidence            4667778889999887655443   233344445555899999998864433 378888999999999998753

>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3

Probab=80.54  E-value=1.3  Score=40.38  Aligned_cols=49  Identities=20%  Similarity=0.163  Sum_probs=41.1

Q ss_pred             CccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccccccccccccH
Q 023366          151 HVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFSW  199 (283)
Q Consensus       151 ~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~sW  199 (283)
                      .-+++|.+|-+   .+-.++++.|+++|..||.|.+..+..|.+.||+.+.-
T Consensus       140 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~  191 (306)
T 1nri_A          140 KNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIET  191 (306)
T ss_dssp             TTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEEC
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEc
Confidence            45788888865   45678889999999999999998888999999988754

>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*

Probab=80.53  E-value=1.4  Score=41.15  Aligned_cols=48  Identities=19%  Similarity=0.171  Sum_probs=38.9

Q ss_pred             CccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          151 HVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       151 ~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                      .-+.+|.+|-+   .+-..+++.|+++|.+||.|.+..+..|.+.||..|.
T Consensus       107 ~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~  157 (375)
T 2zj3_A          107 RDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVH  157 (375)
T ss_dssp             TTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeee
Confidence            34577888864   4567788889999999999999888899999997663

>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}

Probab=80.52  E-value=2  Score=39.85  Aligned_cols=48  Identities=15%  Similarity=0.149  Sum_probs=40.0

Q ss_pred             CccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          151 HVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       151 ~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                      .-+.+|.+|-+   .+-..+++.|+++|++||.|.+..+..|.+.||..|.
T Consensus        82 ~~dlvI~iS~SG~T~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD~~l~  132 (352)
T 3g68_A           82 ENTLVVGVSQGGSSYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILT  132 (352)
T ss_dssp             TTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECC
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCCEEEE
Confidence            45577888865   4667788999999999999999888899999998765

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.48  E-value=0.62  Score=27.45  Aligned_cols=26  Identities=4%  Similarity=-0.042  Sum_probs=20.7

Q ss_pred             cccccc-------cccccCchhhhhhhhhhhhh
Q 023366           64 IHEREQ-------KKRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        64 iHtGEK-------~Krf~~~~sl~~hrR~h~~~   89 (283)
                      .|++++       ++.|.....|..|+++|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            566776       47788899999999999765

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=80.43  E-value=5.1  Score=34.02  Aligned_cols=70  Identities=10%  Similarity=0.134  Sum_probs=46.1

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc-chHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS-DFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~-~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+...+.+.|+.+.......+..  ...+.+..++ ..+++-||+.+.+. .+..+++.+++.|+..|+++..
T Consensus        22 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~l~-~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~   92 (290)
T 2fn9_A           22 ETAKQRAEQLGYEATIFDSQNDTA--KESAHFDAII-AAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRG   92 (290)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCHH--HHHHHHHHHH-HTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEeCCCCCHH--HHHHHHHHHH-HcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecC
Confidence            355666777888877643322111  1122333345 78999999887554 4567899999999999999764

>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}

Probab=80.37  E-value=4.4  Score=34.56  Aligned_cols=70  Identities=17%  Similarity=0.329  Sum_probs=46.8

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc-chHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS-DFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~-~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+...+++.|+.+-......+..  .-.+.+..++ ..+|+-||+.+-+. ...++++.+++.|+..|+|+..
T Consensus        21 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   91 (283)
T 2ioy_A           21 NGAEEKAKELGYKIIVEDSQNDSS--KELSNVEDLI-QQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRS   91 (283)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHH--HHHHHHHHHH-HTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHhcCcEEEEecCCCCHH--HHHHHHHHHH-HcCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCC
Confidence            356666777888887654322211  1123344456 78999999876544 4567889999999999999764

>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}

Probab=80.16  E-value=2  Score=40.21  Aligned_cols=49  Identities=14%  Similarity=0.148  Sum_probs=40.9

Q ss_pred             cCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccccccccccc
Q 023366          150 RHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASFS  198 (283)
Q Consensus       150 ~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~s  198 (283)
                      ..-+.+|.+|-+   .+-..+++.|+++|++||.|.+..+..|.+.||..+.
T Consensus        96 ~~~dlvI~iS~SGeT~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~~aD~~l~  147 (366)
T 3knz_A           96 SGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILT  147 (366)
T ss_dssp             SCSEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEECCCCChhhhhcCEEEe
Confidence            345677888865   5677888999999999999999888899999998774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	3e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.001
d2adra2	31	g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Sac	0.001
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.003
d1sp1a_	29	g.37.1.1 (A:) Transcription factor sp1 {Human (Hom	0.003
d1a1ia2	28	g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus)	0.003

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (92), Expect = 1e-05
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIHERE 68
          PY+C  CG+ F   + L  H KQ+H  E
Sbjct: 5  PYICQSCGKGFSRPDHLNGHIKQVHTSE 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (82), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIHERE 68
          PY C +C  RF  +  +  H  Q H   
Sbjct: 8  PYECYICHARFTQSGTMKMHILQKHTEN 35

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (78), Expect = 0.001
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIHERE 68
          PY C  CG+ F  +  LV H +++H  E
Sbjct: 7  PYGCVECGKAFSRSSILVQH-QRVHTGE 33

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 31

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 33.6 bits (77), Expect = 0.001
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIH 65
          PY CG+C R F   + L+ H ++IH
Sbjct: 1  PYPCGLCNRAFTRRDLLIRHAQKIH 25

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 32.6 bits (75), Expect = 0.003
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIHERE 68
           +VC VC R F   E L  H  + H  E
Sbjct: 2  SFVCEVCTRAFARQEHLKRH-YRSHTNE 28

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.003
 Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIHERE 68
           + C  C +RF  ++ L  H  + H+ +
Sbjct: 2  KFACPECPKRFMRSDHLSKH-IKTHQNK 28

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Length = 28

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.2 bits (74), Expect = 0.003
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 41 PYVCGVCGRRFYSNEKLVNHFKQIH 65
          P+ C +C R F  ++ L  H  + H
Sbjct: 3  PFQCRICMRNFSRSDHLTTH-IRTH 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.08
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.97
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.85
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.83
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.77
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.72
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.67
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.66
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.6
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.57
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.45
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.43
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.34
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.14
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.07
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.05
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.84
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.75
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	97.64
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.58
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.35
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.26
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.23
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.98
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	96.7
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.67
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.52
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.49
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.3
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	96.16
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.09
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	95.68
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.54
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.53
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.42
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.41
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.31
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	95.16
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.13
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	95.12
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.81
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.2
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	94.18
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.12
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.32
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	93.11
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.05
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	93.04
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	92.64
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	92.38
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	91.86
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	90.93
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.3
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.08
d1vima_	192	Hypothetical protein AF1796 {Archaeon Archaeoglobu	89.04
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	88.64
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	88.56
d1m3sa_	186	Hypothetical protein YckF {Bacillus subtilis [TaxI	88.28
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	88.2
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	87.22
d1x94a_	191	Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T	87.18
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	86.56
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	86.41
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	84.42
d1jyea_	271	Lac-repressor (lacR) core (C-terminal domain) {Esc	84.36
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	83.83
d2dria_	271	D-ribose-binding protein {Escherichia coli, strain	83.54
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	82.68
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	81.16
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	80.98

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.9e-11  Score=80.28  Aligned_cols=37  Identities=24%  Similarity=0.490  Sum_probs=35.7

Q ss_pred             hhhcccCCCCCccCCCCCCccCCchhHhhhhhcccccc
Q 023366           31 ENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        31 EhqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      .|+++|++++||.|.+||++|...+.|..|+ ++|+||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~-r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHR-RTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHH-TTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhC-ccCCCC
Confidence            5899999999999999999999999999999 999997

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=7.8e-11  Score=75.46  Aligned_cols=33  Identities=33%  Similarity=0.684  Sum_probs=32.0

Q ss_pred             ccCCCCCccCCCCCCccCCchhHhhhhhcccccc
Q 023366           35 VIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        35 iHTGEKPykC~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      +||+++||.|.+||++|.+.+.|..|+ ++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~-r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQ-RVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHH-HGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhc-cccCCC
Confidence            699999999999999999999999999 999987

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=5.8e-10  Score=72.69  Aligned_cols=35  Identities=23%  Similarity=0.398  Sum_probs=32.8

Q ss_pred             hhcccCCCCCccCCCCCCccCCchhHhhhhhccccc
Q 023366           32 NRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        32 hqriHTGEKPykC~vCGKsFss~ssLkrH~KriHtG   67 (283)
                      |.|+|||++||+|.+|+++|.+...|..|+ ++|..
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~-r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHH-GGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHH-hcCcC
Confidence            679999999999999999999999999999 88864

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.1e-10  Score=72.62  Aligned_cols=34  Identities=24%  Similarity=0.493  Sum_probs=32.2

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhcccccc
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      |+|||++||+|.+||++|...+.|..|+ ++|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~-r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHF-KRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHH-HHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhC-cccCCC
Confidence            6899999999999999999999999999 999875

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1e-09  Score=71.22  Aligned_cols=34  Identities=26%  Similarity=0.501  Sum_probs=30.5

Q ss_pred             cccCCCCCccCCCCCCccCCchhHhhhhhccccc
Q 023366           34 GVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        34 riHTGEKPykC~vCGKsFss~ssLkrH~KriHtG   67 (283)
                      ++|||++||+|.+|+++|.+...|..|+++.|+.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            6899999999999999999999999998456654

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.8e-09  Score=74.20  Aligned_cols=46  Identities=22%  Similarity=0.496  Sum_probs=40.0

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhcccccccc-------ccccCchhhhhhhhhh
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK-------KRLNQIESARGKRRVH   86 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtGEK~-------Krf~~~~sl~~hrR~h   86 (283)
                      |+||.| .||+.|.....|..|+ ++|++++|       +.|...++|..|+|+|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~-~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHH-HHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHh-hccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            589999 4999999999999998 89999984       7788888999998876

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=3.7e-09  Score=68.32  Aligned_cols=32  Identities=22%  Similarity=0.604  Sum_probs=30.5

Q ss_pred             cCCCCCccCCCCCCccCCchhHhhhhhcccccc
Q 023366           36 IKPAEPYVCGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        36 HTGEKPykC~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      |||++||+|.+|++.|.+...|.+|+ ++|+.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~-r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHL-KVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHH-GGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHc-cccCCc
Confidence            79999999999999999999999999 999864

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.2e-09  Score=69.56  Aligned_cols=37  Identities=32%  Similarity=0.774  Sum_probs=33.6

Q ss_pred             CCCCccCCCCCCccCCchhHhhhhhcccccccccccc
Q 023366           38 PAEPYVCGVCGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        38 GEKPykC~vCGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      .++||+|.+||++|...+.|.+|++++|++|||+.|.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            4799999999999999999999974689999998874

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.60  E-value=7.5e-09  Score=64.17  Aligned_cols=29  Identities=38%  Similarity=0.828  Sum_probs=27.9

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|.+||++|.+.+.|..|+ ++|+|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~-r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHY-RSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHH-HTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHccccc-CcccCCC
Confidence            6999999999999999999999 9999986

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.1e-08  Score=63.39  Aligned_cols=29  Identities=24%  Similarity=0.739  Sum_probs=27.9

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|.+||++|.+.+.|.+|+ ++|+|||
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~-r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHI-KTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHH-HGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhc-CccCCcC
Confidence            6999999999999999999999 9999986

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=1.2e-08  Score=62.95  Aligned_cols=28  Identities=29%  Similarity=0.776  Sum_probs=26.8

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhccccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtG   67 (283)
                      |+||+|.+|+++|.++++|.+|+ ++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~-r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHI-RTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHH-HHHHC
T ss_pred             CcCccCCCCcCEecccccccccC-CCccC
Confidence            68999999999999999999999 99986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.5e-08  Score=68.28  Aligned_cols=37  Identities=35%  Similarity=0.745  Sum_probs=34.5

Q ss_pred             hhhhhhcccCCCCCccCCCCCCccCCchhHhhhhhccc
Q 023366           28 NQLENRGVIKPAEPYVCGVCGRRFYSNEKLVNHFKQIH   65 (283)
Q Consensus        28 ~~LEhqriHTGEKPykC~vCGKsFss~ssLkrH~KriH   65 (283)
                      ++..|+++|++++||.|.+||++|.+...|..|+ ++|
T Consensus        17 ~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~-r~H   53 (53)
T d2csha1          17 QRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM-KIH   53 (53)
T ss_dssp             HHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHH-TTT
T ss_pred             HhHHHhhccccccCCcCCCcCCEecCHHHHHHHH-hcC
Confidence            5667999999999999999999999999999999 876

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=2.1e-08  Score=68.47  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=33.7

Q ss_pred             hhcccCCCCCccCCC--CCCccCCchhHhhhhhccccccc
Q 023366           32 NRGVIKPAEPYVCGV--CGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        32 hqriHTGEKPykC~v--CGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +...|++++||.|.+  |++.|...+.|..|+ ++|+|||
T Consensus         9 ~h~~h~gekpy~C~~~~C~k~F~~~~~L~~H~-r~Htgek   47 (47)
T d1ncsa_           9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHI-QTHLEDR   47 (47)
T ss_dssp             GSCEEETTTEEECCCTTCCCEECSSSSHHHHH-HHHTTTC
T ss_pred             chhhccCCCCeECCcCCCCccccCchHHHhhc-ccccCCC
Confidence            444699999999987  999999999999999 9999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=4.2e-08  Score=59.56  Aligned_cols=26  Identities=46%  Similarity=0.951  Sum_probs=24.7

Q ss_pred             CCccCCCCCCccCCchhHhhhhhcccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      +||+|.+||++|..++.|.+|+ ++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hq-riHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQ-RIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH-HHHH
T ss_pred             CCccCCCCcCeeccCcccccCc-cCCC
Confidence            6999999999999999999999 9885

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.8e-07  Score=56.82  Aligned_cols=28  Identities=29%  Similarity=0.617  Sum_probs=26.7

Q ss_pred             CCccCCC--CCCccCCchhHhhhhhcccccc
Q 023366           40 EPYVCGV--CGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        40 KPykC~v--CGKsFss~ssLkrH~KriHtGE   68 (283)
                      +||.|.+  |+++|.+.+.|..|+ ++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~-r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHL-RSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHH-HHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhc-CcCcCC
Confidence            6999998  999999999999999 999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=7.4e-07  Score=55.75  Aligned_cols=29  Identities=34%  Similarity=0.868  Sum_probs=26.9

Q ss_pred             CCccCC--CCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCG--VCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~--vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|+  .|+++|.+.++|..|+ ++|+|||
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~-r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHK-RTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHH-TTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhc-CcccccC
Confidence            699996  5999999999999999 9999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=4.4e-07  Score=56.47  Aligned_cols=28  Identities=36%  Similarity=0.859  Sum_probs=26.4

Q ss_pred             CCccCCC--CCCccCCchhHhhhhhcccccc
Q 023366           40 EPYVCGV--CGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        40 KPykC~v--CGKsFss~ssLkrH~KriHtGE   68 (283)
                      +||.|.+  ||++|.+.+.|..|+ ++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~-r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHV-RIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHH-HHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccc-cccCCC
Confidence            6999987  999999999999999 999986

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=4.6e-06  Score=52.49  Aligned_cols=29  Identities=31%  Similarity=0.773  Sum_probs=26.7

Q ss_pred             CCCccCCC--CCCccCCchhHhhhhhcccccc
Q 023366           39 AEPYVCGV--CGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        39 EKPykC~v--CGKsFss~ssLkrH~KriHtGE   68 (283)
                      |+||.|.+  |+++|.+.++|.+|+ ++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~-r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHK-KSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHH-GGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHh-hhccCC
Confidence            68999988  999999999999999 999864

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=2.8e-06  Score=52.40  Aligned_cols=27  Identities=44%  Similarity=0.965  Sum_probs=25.3

Q ss_pred             CCccCCC--CCCccCCchhHhhhhhccccc
Q 023366           40 EPYVCGV--CGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        40 KPykC~v--CGKsFss~ssLkrH~KriHtG   67 (283)
                      +||.|.+  |+++|.+.++|.+|+ ++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~-r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHI-RIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHT-HHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhc-CccCC
Confidence            6999987  999999999999999 99986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=6.2e-06  Score=53.02  Aligned_cols=32  Identities=22%  Similarity=0.583  Sum_probs=29.2

Q ss_pred             ccCCC--CCCccCCchhHhhhhhcccccccccccc
Q 023366           42 YVCGV--CGRRFYSNEKLVNHFKQIHEREQKKRLN   74 (283)
Q Consensus        42 ykC~v--CGKsFss~ssLkrH~KriHtGEK~Krf~   74 (283)
                      |.|+.  ||+.|.+...|++|+ ++|+||||..|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~-r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHM-KLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHH-HHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhcccc-CeeCCCCCEeCC
Confidence            67876  999999999999999 999999998763

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1e-05  Score=49.53  Aligned_cols=26  Identities=35%  Similarity=0.860  Sum_probs=24.1

Q ss_pred             CCccCCC--CCCccCCchhHhhhhhcccc
Q 023366           40 EPYVCGV--CGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        40 KPykC~v--CGKsFss~ssLkrH~KriHt   66 (283)
                      +||.|..  ||++|.+.++|++|+ ++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~-r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHI-LTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHH-HHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHH-hhcc
Confidence            6999988  999999999999999 8885

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.3e-05  Score=45.19  Aligned_cols=26  Identities=38%  Similarity=0.816  Sum_probs=24.6

Q ss_pred             CccCCCCCCccCCchhHhhhhhccccc
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~KriHtG   67 (283)
                      |++|.+|++.|+....|+.|+ +.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hm-r~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHM-RCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHG-GGCCC
T ss_pred             CCccchhhhHhcchhHHHHHh-hccCC
Confidence            789999999999999999999 99986

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=5e-05  Score=46.04  Aligned_cols=27  Identities=33%  Similarity=0.894  Sum_probs=25.0

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhcccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      |+||.|.+||+.|..+...++|. ++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~-kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHT-KIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHH-GGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhh-hhcc
Confidence            68999999999999999999999 8874

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=6.3e-05  Score=45.23  Aligned_cols=27  Identities=37%  Similarity=0.693  Sum_probs=25.0

Q ss_pred             CccCCCCCCccCCchhHhhhhhcccccc
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      .+.|.+||++|..++.|++|+ -+|+||
T Consensus         2 ~hvc~ecgkaf~essklkrh~-lvhtge   28 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQ-LVHTGE   28 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHG-GGTSCC
T ss_pred             cchHHHHhHHHHHHHHHHHHh-hcccCC
Confidence            468999999999999999999 999986

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00013  Score=45.92  Aligned_cols=31  Identities=26%  Similarity=0.459  Sum_probs=28.7

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQKK   71 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK~K   71 (283)
                      +...|..||+.|....+|++|. -.|++|+|+
T Consensus         4 k~~~ce~cgk~frdvyhlnrhk-lshs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHK-LSHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHG-GGSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhh-cccCCCCCC
Confidence            5678999999999999999998 999999986

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00021  Score=45.85  Aligned_cols=30  Identities=13%  Similarity=0.139  Sum_probs=27.0

Q ss_pred             hhhhcccccccc-------ccccCchhhhhhhhhhhhh
Q 023366           59 NHFKQIHEREQK-------KRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        59 rH~KriHtGEK~-------Krf~~~~sl~~hrR~h~~~   89 (283)
                      +|+ ++|+++||       |.|.+.++|..|+|+|++|
T Consensus         2 rH~-~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSE-WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCC-SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccC-cccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            588 99999995       8889999999999999875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00035  Score=42.15  Aligned_cols=27  Identities=30%  Similarity=0.616  Sum_probs=25.6

Q ss_pred             ccCCCCCCccCCchhHhhhhhccccccc
Q 023366           42 YVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        42 ykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      |.|++||..+..++-|.+|+ +.|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHI-RsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHI-RTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHH-HHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHH-HHhcCCC
Confidence            89999999999999999999 9999875

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00037  Score=42.86  Aligned_cols=29  Identities=34%  Similarity=0.856  Sum_probs=26.7

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhcccccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      ++||.|++|+..|.....+..|. +.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhv-rshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHV-RSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHH-HHHSCC
T ss_pred             CCCcccchHHHHhhccccceEee-ecccCc
Confidence            58999999999999999999999 888874

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00052  Score=41.36  Aligned_cols=28  Identities=21%  Similarity=0.546  Sum_probs=26.3

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhccccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtG   67 (283)
                      ++||+|..|...-+.++.|..|. +.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhl-r~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHL-RSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHH-TTCCS
T ss_pred             CCcceeeecccccCCchheEEee-ecccC
Confidence            58999999999999999999999 99987

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.30  E-value=0.0007  Score=41.74  Aligned_cols=27  Identities=41%  Similarity=0.970  Sum_probs=25.1

Q ss_pred             CccCCCCCCccCCchhHhhhhhccccc
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~KriHtG   67 (283)
                      ||.|.+|++.|..+.-|.+|++++|.|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            899999999999999999999778876

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00082  Score=42.02  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=23.2

Q ss_pred             ccccccc-------ccccCchhhhhhhhhhhhh
Q 023366           64 IHEREQK-------KRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        64 iHtGEK~-------Krf~~~~sl~~hrR~h~~~   89 (283)
                      +|+||||       |.|.+.++|..|+|+|+++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            6899995       8889999999999999875

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0011  Score=43.55  Aligned_cols=25  Identities=28%  Similarity=0.797  Sum_probs=23.5

Q ss_pred             CCCCCccCCCCCCccCCchhHhhhh
Q 023366           37 KPAEPYVCGVCGRRFYSNEKLVNHF   61 (283)
Q Consensus        37 TGEKPykC~vCGKsFss~ssLkrH~   61 (283)
                      ||-+||.|..|++.|..+.++.+|.
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~   25 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHV   25 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhh
Confidence            5789999999999999999999997

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0023  Score=38.79  Aligned_cols=30  Identities=30%  Similarity=0.573  Sum_probs=25.9

Q ss_pred             CCccCCCCCCccCCchhHhhhhhccccccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +||.|..|......+++|+.|.|.-|..|+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhskek   30 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccccccccccccchhhhhhhhcccccCC
Confidence            699999999999999999999966676553

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.002  Score=40.81  Aligned_cols=27  Identities=7%  Similarity=0.097  Sum_probs=24.2

Q ss_pred             hhhcccccccc-------ccccCchhhhhhhhhhh
Q 023366           60 HFKQIHEREQK-------KRLNQIESARGKRRVHL   87 (283)
Q Consensus        60 H~KriHtGEK~-------Krf~~~~sl~~hrR~h~   87 (283)
                      |. ++|+||||       |+|.+.++|..|+|+|.
T Consensus         2 h~-R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 ST-RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CS-STTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CC-CccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            67 89999996       88889999999999995

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0024  Score=39.31  Aligned_cols=28  Identities=25%  Similarity=0.686  Sum_probs=24.4

Q ss_pred             CCccCCC--CCCccCCchhHhhhhhccccc
Q 023366           40 EPYVCGV--CGRRFYSNEKLVNHFKQIHER   67 (283)
Q Consensus        40 KPykC~v--CGKsFss~ssLkrH~KriHtG   67 (283)
                      +||.|.+  |.|+|+..+.-.+|+.++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            6999987  999999999999997577764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0022  Score=38.22  Aligned_cols=26  Identities=31%  Similarity=0.692  Sum_probs=24.5

Q ss_pred             CCccCCCCCCccCCchhHhhhhhcccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      +||+|..|...-..+++|++|+ ++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~-rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHL-RIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHH-HHSC
T ss_pred             CCcccccccchhcchhhHhhhh-hccc
Confidence            7999999999999999999999 9885

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.42  E-value=0.0027  Score=37.49  Aligned_cols=26  Identities=31%  Similarity=0.528  Sum_probs=24.4

Q ss_pred             cCCCCCCccCCchhHhhhhhccccccc
Q 023366           43 VCGVCGRRFYSNEKLVNHFKQIHEREQ   69 (283)
Q Consensus        43 kC~vCGKsFss~ssLkrH~KriHtGEK   69 (283)
                      +|+.|.+.|.+...|+.|. +-|+||+
T Consensus         2 qcp~c~k~f~skyylkvhn-r~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHN-RKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHH-HHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhcc-ccccCCC
Confidence            6999999999999999999 9999985

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.41  E-value=0.0036  Score=40.21  Aligned_cols=31  Identities=32%  Similarity=0.776  Sum_probs=27.3

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhcccccccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHEREQK   70 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtGEK~   70 (283)
                      .+.|.|.+|++.|.+...|--|+ +.|..++.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~-~~Hr~~r~   33 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHM-NVHRRDRA   33 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHH-HTTCCSCT
T ss_pred             CCccCCCCCCCccCCcccccchH-hhhcchHH
Confidence            46799999999999999999999 88877653

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.31  E-value=0.0042  Score=36.20  Aligned_cols=24  Identities=38%  Similarity=0.922  Sum_probs=22.3

Q ss_pred             ccCCCCCCccCCchhHhhhhhcccc
Q 023366           42 YVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        42 ykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      |+|..|.++|-..+.|.+|+ ++|.
T Consensus         1 ykcglcersfveksalsrhq-rvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQ-RVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHG-GGTC
T ss_pred             CcccchHHHHHHHHHHHHHH-Hhhc
Confidence            78999999999999999999 8874

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0029  Score=39.88  Aligned_cols=27  Identities=15%  Similarity=0.006  Sum_probs=23.6

Q ss_pred             cccccccc-------ccccCchhhhhhhhhhhhh
Q 023366           63 QIHEREQK-------KRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        63 riHtGEK~-------Krf~~~~sl~~hrR~h~~~   89 (283)
                      ++|+||||       |+|.+.++|+.|+++|..+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            58999996       8888899999999999754

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0037  Score=38.00  Aligned_cols=26  Identities=38%  Similarity=0.952  Sum_probs=22.2

Q ss_pred             CCccCCC--CCCccCCchhHhhhhhccc
Q 023366           40 EPYVCGV--CGRRFYSNEKLVNHFKQIH   65 (283)
Q Consensus        40 KPykC~v--CGKsFss~ssLkrH~KriH   65 (283)
                      +||.|.+  |++++..+++|.+|+|..|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            6999987  9999999999999993333

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0028  Score=42.27  Aligned_cols=35  Identities=11%  Similarity=0.153  Sum_probs=29.0

Q ss_pred             chhHhhhhhcccccccc---------ccccCchhhhhhhhhhhhhh
Q 023366           54 NEKLVNHFKQIHEREQK---------KRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        54 ~ssLkrH~KriHtGEK~---------Krf~~~~sl~~hrR~h~~~k   90 (283)
                      +..|..|.  .|++|+|         |+|++.++|+.|+|+|+++|
T Consensus         4 ~~~l~~h~--~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           4 RGSIDKYV--KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             CSSGGGSC--EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             cchhcchh--hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            45667776  4999994         78889999999999999875

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.81  E-value=0.0039  Score=37.52  Aligned_cols=25  Identities=36%  Similarity=0.772  Sum_probs=22.3

Q ss_pred             CCccCCC--CCCccCCchhHhhhhhccc
Q 023366           40 EPYVCGV--CGRRFYSNEKLVNHFKQIH   65 (283)
Q Consensus        40 KPykC~v--CGKsFss~ssLkrH~KriH   65 (283)
                      .||+|+.  |++.|..++.|++|. ++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhe-kvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHE-KVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHH-HHH
T ss_pred             CCccCCccCccccccCHHHHhhhh-hcc
Confidence            5899975  999999999999998 766

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.0071  Score=36.45  Aligned_cols=27  Identities=26%  Similarity=0.604  Sum_probs=24.0

Q ss_pred             CCccCCCCCCccCCchhHhhhhhcccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      +||+|..|..--.++++|..|.|+.|.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            599999999999999999999976664

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.0047  Score=39.08  Aligned_cols=20  Identities=15%  Similarity=0.252  Sum_probs=17.3

Q ss_pred             hhhhhhhhcccCCCCCccCC
Q 023366           26 LFNQLENRGVIKPAEPYVCG   45 (283)
Q Consensus        26 ~l~~LEhqriHTGEKPykC~   45 (283)
                      ..++.+|+++|+|++||.|.
T Consensus        16 ~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2          16 KKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             HHHHHHHHHHHHTSCCCSCC
T ss_pred             hhHhccccCeeCCCCCEeCC
Confidence            34677899999999999997

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.12  E-value=0.0081  Score=36.24  Aligned_cols=28  Identities=32%  Similarity=0.621  Sum_probs=24.7

Q ss_pred             CCccCCC--CCCccCCchhHhhhhhcccccc
Q 023366           40 EPYVCGV--CGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        40 KPykC~v--CGKsFss~ssLkrH~KriHtGE   68 (283)
                      +||.|..  |.+.|.+-.+|.+|. ..|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs-~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHS-LTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHH-HHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhh-ccccCC
Confidence            5888865  999999999999998 889886

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.32  E-value=0.012  Score=35.36  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=19.4

Q ss_pred             cccccCchhhhhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~~~k   90 (283)
                      +|+|.+.+.|+.|+|+|+++|
T Consensus         9 ~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           9 TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBSCHHHHHHHHHTTTSSC
T ss_pred             CCCCCCchHcccccCcccCCC
Confidence            689999999999999999875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.016  Score=34.85  Aligned_cols=21  Identities=19%  Similarity=0.192  Sum_probs=19.3

Q ss_pred             cccccCchhhhhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~~~k   90 (283)
                      +|+|.+.++|..|+|+|+++|
T Consensus         9 ~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           9 PKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             TCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCeecchHHhhhhcCccCCcC
Confidence            689999999999999999875

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.017  Score=36.95  Aligned_cols=21  Identities=19%  Similarity=0.105  Sum_probs=16.6

Q ss_pred             hhhhhhhh-cccCCCCCccCCC
Q 023366           26 LFNQLENR-GVIKPAEPYVCGV   46 (283)
Q Consensus        26 ~l~~LEhq-riHTGEKPykC~v   46 (283)
                      .-++..|. ++|++++||+|.+
T Consensus        18 ~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1          18 PDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             HHHHHHHHHHTSCCCCCCCSSS
T ss_pred             hHHhhccCcCccCCCcCcCCcC
Confidence            34667785 5899999999974

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.018  Score=34.52  Aligned_cols=22  Identities=36%  Similarity=0.818  Sum_probs=20.8

Q ss_pred             CccCCCCCCccCCchhHhhhhh
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFK   62 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~K   62 (283)
                      ||.|..|..+|.+..+|.+|+|
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            8999999999999999999993

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.015  Score=35.45  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=19.4

Q ss_pred             cccccCchhhhhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHLVGK   90 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~~~k   90 (283)
                      +|+|.+.++|+.|+|+|+++|
T Consensus        11 ~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_          11 GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCcCChhHhhhhcCcccccC
Confidence            689999999999999999875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.38  E-value=0.024  Score=35.50  Aligned_cols=24  Identities=8%  Similarity=0.101  Sum_probs=21.2

Q ss_pred             cccccc-------ccccCchhhhhhhhhhhh
Q 023366           65 HEREQK-------KRLNQIESARGKRRVHLV   88 (283)
Q Consensus        65 HtGEK~-------Krf~~~~sl~~hrR~h~~   88 (283)
                      |+||||       |+|.+.++|+.|+|+|+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            788995       888999999999999974

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.86  E-value=0.03  Score=33.59  Aligned_cols=29  Identities=28%  Similarity=0.544  Sum_probs=26.6

Q ss_pred             CCCccCCCCCCccCCchhHhhhhhcccccc
Q 023366           39 AEPYVCGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        39 EKPykC~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      ++-|.|..|...|..+..|.-|+ ..|+||
T Consensus         2 eqvftcs~cqe~f~rrmelr~hm-vshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHM-VSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHH-HHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeee-ecccCC
Confidence            46789999999999999999999 999986

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.034  Score=34.77  Aligned_cols=24  Identities=17%  Similarity=0.177  Sum_probs=19.9

Q ss_pred             cccccccc-------ccccCchhhhhhhhhh
Q 023366           63 QIHEREQK-------KRLNQIESARGKRRVH   86 (283)
Q Consensus        63 riHtGEK~-------Krf~~~~sl~~hrR~h   86 (283)
                      ++|+||||       |+|++.++|+.|.+.+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~   31 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQK   31 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccc
Confidence            57999996       8888999999996543

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.037  Score=33.47  Aligned_cols=20  Identities=25%  Similarity=0.195  Sum_probs=18.4

Q ss_pred             cccccCchhhhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~~~   89 (283)
                      .|+|.+.++|+.|+|+|+++
T Consensus        11 gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3          11 GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEESCHHHHHHHHHHHHCC
T ss_pred             CceECcHHHcCccccccCCC
Confidence            68999999999999999875

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.08  E-value=0.052  Score=32.84  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=18.5

Q ss_pred             cccccCchhhhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHLVG   89 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~~~   89 (283)
                      .|+|.+.++|+.|+|+|+++
T Consensus        11 gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3          11 RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCSSHHHHHHHHHHTTTC
T ss_pred             CceECChhHhhhhcCcCcCC
Confidence            68999999999999999875

>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein AF1796
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.04  E-value=0.15  Score=41.21  Aligned_cols=72  Identities=25%  Similarity=0.303  Sum_probs=53.7

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCcccc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALK  190 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~  190 (283)
                      ++..|.+-|..+..+.+... +          .+  ..-++++++|=.   .+-..+++.|+++|.++|+|.+..+..|.
T Consensus        58 ~~~~l~~lg~~~~~~~~~~~-~----------~i--~~~Dl~i~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~l~  124 (192)
T d1vima_          58 FAMRLMHLGYTVYVVGETVT-P----------RI--TDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLA  124 (192)
T ss_dssp             HHHHHHHTTCCEEETTSTTC-C----------CC--CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHH
T ss_pred             hhhhhccccccccccccccc-c----------cc--cccccceeccccccchhhHHHHHHHHhhcccceeeeeccccccc
Confidence            44567788999988766321 0          12  234678888844   56677888999999999999998888999


Q ss_pred             cccccccc
Q 023366          191 RIADASFS  198 (283)
Q Consensus       191 r~ad~~~s  198 (283)
                      +.||..|.
T Consensus       125 ~~ad~~l~  132 (192)
T d1vima_         125 KMADVVMV  132 (192)
T ss_dssp             HHCSEEEE
T ss_pred             cccceEEE
Confidence            99998874

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.64  E-value=0.082  Score=30.55  Aligned_cols=21  Identities=33%  Similarity=0.952  Sum_probs=20.1

Q ss_pred             CccCCCCCCccCCchhHhhhh
Q 023366           41 PYVCGVCGRRFYSNEKLVNHF   61 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~   61 (283)
                      ||+|.-|...|.+...|..|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            899999999999999999997

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.56  E-value=0.08  Score=33.78  Aligned_cols=27  Identities=33%  Similarity=0.808  Sum_probs=23.2

Q ss_pred             CCCCccC--CCCCCccCCchhHhhhhhccc
Q 023366           38 PAEPYVC--GVCGRRFYSNEKLVNHFKQIH   65 (283)
Q Consensus        38 GEKPykC--~vCGKsFss~ssLkrH~KriH   65 (283)
                      .++||.|  +.|+.+|.+...|..|. .-|
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk-~KH   31 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHK-HKH   31 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHH-HHH
T ss_pred             CCCceecCCCCccccccchHHHHHhh-hhh
Confidence            4799999  56999999999999998 444

>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

Probab=88.28  E-value=0.19  Score=40.28  Aligned_cols=72  Identities=15%  Similarity=0.128  Sum_probs=53.2

Q ss_pred             hhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCc---chHHHHHHHHHcCCcEEEEccCCCcccc
Q 023366          114 LADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDS---DFVDVLQEAKYRCLKTVVVGDINDGALK  190 (283)
Q Consensus       114 la~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~---~f~~~l~~ar~~~~~tvvvg~~~~~~l~  190 (283)
                      ++..|.+-|+.+-.+.|--.           ..+  ..-|+++.+|-.-   +-..+++.|+++|+++|+|.+..+..|+
T Consensus        55 ~~~~l~~lg~~~~~~~d~~~-----------~~~--~~~Dl~I~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~La  121 (186)
T d1m3sa_          55 FAMRLMHMGFNAHIVGEILT-----------PPL--AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIG  121 (186)
T ss_dssp             HHHHHHHTTCCEEETTSTTC-----------CCC--CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHH
T ss_pred             HHHHHHhccCCCCcCChhhc-----------ccC--CCCCEEEEecCccchhhhHHHHHHHHHCCCCEEEEecCCCchhh
Confidence            44557789998888765210           012  2346888888653   5567888999999999999988888999


Q ss_pred             cccccccc
Q 023366          191 RIADASFS  198 (283)
Q Consensus       191 r~ad~~~s  198 (283)
                      +.||..+.
T Consensus       122 ~~ad~~i~  129 (186)
T d1m3sa_         122 KQADLIIR  129 (186)
T ss_dssp             HHCSEEEE
T ss_pred             HhCCEEEE
Confidence            99997763

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.20  E-value=0.068  Score=31.79  Aligned_cols=19  Identities=11%  Similarity=0.151  Sum_probs=17.4

Q ss_pred             cccccCchhhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHLV   88 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~~   88 (283)
                      +|+|++.++|+.|+|+|++
T Consensus        10 ~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2          10 MRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCEESCHHHHHHHHHHHHC
T ss_pred             cCEecccccccccCCCccC
Confidence            5899999999999999975

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.22  E-value=0.13  Score=30.42  Aligned_cols=25  Identities=32%  Similarity=0.438  Sum_probs=22.7

Q ss_pred             CccCCCCCCccCCchhHhhhhhcccc
Q 023366           41 PYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      |-+|+.|..++++...|+.|. ++|-
T Consensus         2 pekc~ecsyscsskaalrvh~-rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHE-RIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHH-GGGC
T ss_pred             CccCcccccccCcHHHHHHhh-cccc
Confidence            678999999999999999999 8884

>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Vibrio cholerae [TaxId: 666]

Probab=87.18  E-value=0.28  Score=40.02  Aligned_cols=48  Identities=19%  Similarity=0.346  Sum_probs=41.4

Q ss_pred             cCccEEEEEeCC---cchHHHHHHHHHcCCcEEEEccCCCccccccccccc
Q 023366          150 RHVECLVIVSDD---SDFVDVLQEAKYRCLKTVVVGDINDGALKRIADASF  197 (283)
Q Consensus       150 ~~v~~lvlvsdd---~~f~~~l~~ar~~~~~tvvvg~~~~~~l~r~ad~~~  197 (283)
                      ..-|+|+++|.+   ..-..+++.|+++|++|+.|....++.|++.+|+-+
T Consensus       110 ~~gDvli~iS~SG~s~~ii~a~~~Ak~~g~~~i~it~~~~~~l~~~~D~~I  160 (191)
T d1x94a_         110 AKGDVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAGLADVEI  160 (191)
T ss_dssp             CTTCEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTTSSEEE
T ss_pred             CCCCEEEEEecCCccccchhhHHHHHhCCCeEEEEecCCCCcccccCCEEE
Confidence            355899999865   457788999999999999999988899999999877

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.56  E-value=0.1  Score=30.66  Aligned_cols=18  Identities=22%  Similarity=0.303  Sum_probs=16.8

Q ss_pred             cccccCchhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHL   87 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~   87 (283)
                      +|.|++.++|..|+|+|+
T Consensus         9 gK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           9 GKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEESSHHHHHHHHHHHH
T ss_pred             cCeeccCcccccCccCCC
Confidence            689999999999999995

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.41  E-value=0.16  Score=29.90  Aligned_cols=21  Identities=33%  Similarity=0.977  Sum_probs=19.5

Q ss_pred             CccCCCCCCccCCchhHhhhh
Q 023366           41 PYVCGVCGRRFYSNEKLVNHF   61 (283)
Q Consensus        41 PykC~vCGKsFss~ssLkrH~   61 (283)
                      ||+|..||+.+-....|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            799999999999999999886

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.42  E-value=0.15  Score=30.54  Aligned_cols=19  Identities=16%  Similarity=0.282  Sum_probs=17.5

Q ss_pred             cccccCchhhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHLV   88 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~~   88 (283)
                      .|+|.+.++|+.|+|+|++
T Consensus        11 ~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1          11 DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEESSHHHHHHHTHHHHT
T ss_pred             CcEECchhHhhhhcCccCC
Confidence            5899999999999999975

>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=84.36  E-value=0.79  Score=37.44  Aligned_cols=72  Identities=13%  Similarity=0.076  Sum_probs=51.4

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      .|+...++..|+.|-.....-. .-...+..+..++ .++|+-|+|.+...+...++..+.+.++-.|+++-..
T Consensus        20 ~~i~~~a~~~Gy~v~v~~~~~~-~~~~~~~~l~~l~-~~~vdgiIl~~~~~~~~~~~~~~~~~~iPvV~~d~~~   91 (271)
T d1jyea_          20 AAILSRADQLGASVVVSMVERS-GVEACKTAVHNLL-AQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSD   91 (271)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSS-SHHHHHHHHHHHH-TTTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSCT
T ss_pred             HHHHHHHHHcCCEEEEEECCCC-CHHHHHHHHHHHH-hcCCCEEEeccccCchhHHHHHHHhcCCCeeeeeccc
Confidence            4677788899999865322111 1124555565566 7899999887777777888888999999999997543

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.83  E-value=0.19  Score=29.82  Aligned_cols=18  Identities=17%  Similarity=0.239  Sum_probs=16.7

Q ss_pred             cccccCchhhhhhhhhhh
Q 023366           70 KKRLNQIESARGKRRVHL   87 (283)
Q Consensus        70 ~Krf~~~~sl~~hrR~h~   87 (283)
                      .|+|.+.++|+.|+|+|+
T Consensus        11 ~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4          11 NKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCHHHHHHHHhhcc
Confidence            689999999999999995

>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-ribose-binding protein
species: Escherichia coli, strain k-12 [TaxId: 562]

Probab=83.54  E-value=1.3  Score=34.93  Aligned_cols=69  Identities=14%  Similarity=0.218  Sum_probs=51.4

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHH-HHHHHHHHhhcCccEEEEEeCC-cchHHHHHHHHHcCCcEEEEccC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVAL-RNHMVDMMDKRHVECLVIVSDD-SDFVDVLQEAKYRCLKTVVVGDI  184 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al-~~~~~~~~~~~~v~~lvlvsdd-~~f~~~l~~ar~~~~~tvvvg~~  184 (283)
                      .|+..++++.|+.+.++...   .|.+. .+.+..++ .+|++.|++..-+ ..+..+++.+++.++..|+++..
T Consensus        21 ~gi~~~a~~~g~~~~i~~~~---~~~~~~~~~i~~~~-~~~~d~ii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~   91 (271)
T d2dria_          21 DGAQKEADKLGYNLVVLDSQ---NNPAKELANVQDLT-VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ   91 (271)
T ss_dssp             HHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHT-TTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEEeCC---CCHHHHHHHHHHHH-hcCCcccccccccccchHHHHHHHhhcceeEEEeccc
Confidence            57778888999999765432   23333 34444455 8999999998754 66789999999999999999763

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.68  E-value=0.22  Score=33.41  Aligned_cols=26  Identities=31%  Similarity=0.645  Sum_probs=22.4

Q ss_pred             CCccCCCCCCccCCchhHhhhhhcccc
Q 023366           40 EPYVCGVCGRRFYSNEKLVNHFKQIHE   66 (283)
Q Consensus        40 KPykC~vCGKsFss~ssLkrH~KriHt   66 (283)
                      --|.|..|||.|.....|++|. ..|.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HE-AQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHE-AQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHH-HHHT
T ss_pred             ceeeccccccccCCHHHHhHhH-HhcC
Confidence            3588999999999999999998 6554

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.16  E-value=0.24  Score=30.62  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=19.1

Q ss_pred             CCCCCCccCCchhHhhhhhcccccc
Q 023366           44 CGVCGRRFYSNEKLVNHFKQIHERE   68 (283)
Q Consensus        44 C~vCGKsFss~ssLkrH~KriHtGE   68 (283)
                      |..-++.|.....|..|+ +.|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~-R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHM-RRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHT-HHHHCC
T ss_pred             CCCCCCcchhHHHHHHHH-hhcCCC
Confidence            333446799999999999 999986

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.98  E-value=2.6  Score=33.43  Aligned_cols=71  Identities=13%  Similarity=0.139  Sum_probs=49.4

Q ss_pred             CchhhhhhhcCeeeeecCCCchhHHHHHHHHHHHHHhhcCccEEEEEeCCcchHHHHHHHHHcCCcEEEEccCC
Q 023366          112 YGLADELKRAGFWVRTVSDKPQAADVALRNHMVDMMDKRHVECLVIVSDDSDFVDVLQEAKYRCLKTVVVGDIN  185 (283)
Q Consensus       112 ygla~~L~RaG~~V~~v~dkp~aaD~al~~~~~~~~~~~~v~~lvlvsdd~~f~~~l~~ar~~~~~tvvvg~~~  185 (283)
                      -|+..++++.|+.+..+....+   ......+.+.+..++++-+|++..+.+-.-+...+..+++..|+|+...
T Consensus        20 ~gi~~~~~~~gy~~~~~~~~~d---~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~   90 (282)
T d1dbqa_          20 EAVEKNCFQKGYTLILGNAWNN---LEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGE   90 (282)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTC---HHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSS
T ss_pred             HHHHHHHHHcCCEEEEEeCCCC---HHHHHHHHHHHHhcCCCEEeeecccccchhhhhHHhhcCCCceEEEecc
Confidence            4667778889999987655444   3344555555558999998887766654545555566899999998653