Citrus Sinensis ID: 023370

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHEEEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccEEHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccc
mskevneegqthrhhhgkdyvdpppaplidmAELKLWSFYRALIAEFVATLLFLYVSVATVighkkqsdacggvGLLGIAWAFGGMIFVLVYCTagisgghinpaVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHeynslgggantvasgynkgsalgAEIIGTFVLVYTVFsatdpkrsardshvpvlaplpiGFAVFMVHLAtipitgtginparsfgaaviynndkawddhwifwVGPFVGALAAAAYHQYILRAAAIKALgsfrsnpsn
mskevneegqthrhhhgkdyvdppPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN
MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN
**************************PLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATD*******SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALG********
***********************PPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILR****************
*****************KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN
*****************KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL*********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
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MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query283 2.2.26 [Sep-21-2011]
P93004280 Aquaporin PIP2-7 OS=Arabi yes no 0.989 1.0 0.886 1e-146
Q9ZVX8278 Probable aquaporin PIP2-8 no no 0.982 1.0 0.901 1e-145
P42767282 Aquaporin PIP-type OS=Atr N/A no 0.992 0.996 0.852 1e-141
Q7XLR1282 Probable aquaporin PIP2-6 yes no 0.989 0.992 0.838 1e-136
Q8H5N9290 Probable aquaporin PIP2-1 no no 0.985 0.962 0.787 1e-126
Q9ATM4287 Aquaporin PIP2-7 OS=Zea m N/A no 0.985 0.972 0.766 1e-126
Q84RL7290 Aquaporin PIP2-1 OS=Zea m N/A no 0.985 0.962 0.783 1e-125
Q9ATM6288 Aquaporin PIP2-4 OS=Zea m N/A no 0.985 0.968 0.756 1e-125
Q9ATM8292 Aquaporin PIP2-2 OS=Zea m N/A no 0.985 0.955 0.764 1e-124
Q6K215288 Probable aquaporin PIP2-2 no no 0.985 0.968 0.753 1e-124
>sp|P93004|PIP27_ARATH Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2 Back     alignment and function desciption
 Score =  517 bits (1332), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/283 (88%), Positives = 268/283 (94%), Gaps = 3/283 (1%)

Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EEG+TH   HGKDYVDPPPAPL+DM ELK WSFYRALIAEF+ATLLFLYV+VAT
Sbjct: 1   MSKEVSEEGKTH---HGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVAT 57

Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGHKKQ+  C GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 58  VIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVR 117

Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           A+ YM+AQCLGAICGVG VKAFMK  YN+LGGGANTVA GY+KG+ALGAEIIGTFVLVYT
Sbjct: 118 ALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYT 177

Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
           VFSATDPKRSARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN+KA
Sbjct: 178 VFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKA 237

Query: 241 WDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 283
           WDD WIFWVGPF+GALAAAAYHQYILRA+AIKALGSFRSN +N
Sbjct: 238 WDDQWIFWVGPFLGALAAAAYHQYILRASAIKALGSFRSNATN 280
Water channel required to facilitate the transport of water across cell membrane. May be involved in the osmoregulation in plants under high osmotic stress such as under a high salt condition.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZVX8|PIP28_ARATH Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1 Back     alignment and function description
>sp|P42767|PIP1_ATRCA Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1 Back     alignment and function description
>sp|Q7XLR1|PIP26_ORYSJ Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2 Back     alignment and function description
>sp|Q8H5N9|PIP21_ORYSJ Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM4|PIP27_MAIZE Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1 Back     alignment and function description
>sp|Q84RL7|PIP21_MAIZE Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2 Back     alignment and function description
>sp|Q9ATM6|PIP24_MAIZE Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATM8|PIP22_MAIZE Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q6K215|PIP22_ORYSJ Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
171190270278 aquaporin PIP2;4 [Gossypium hirsutum] 0.982 1.0 0.929 1e-149
171190268278 aquaporin PIP2;3 [Gossypium hirsutum] 0.982 1.0 0.925 1e-148
256568425278 PIP protein [Gossypium hirsutum] 0.982 1.0 0.922 1e-148
256568423278 PIP protein [Gossypium hirsutum] 0.982 1.0 0.922 1e-148
60498693281 plasma membrane intrinsic protein 2;5 [M 0.992 1.0 0.918 1e-148
225428051279 PREDICTED: aquaporin PIP2-7 [Vitis vinif 0.985 1.0 0.911 1e-148
395146531 694 putative aquaporin PIP2-8 [Linum usitati 0.996 0.406 0.911 1e-148
111379080279 putative aquaporin [Vitis vinifera] gi|1 0.985 1.0 0.908 1e-148
238814678281 plasma intrinsic protein 2;5 [Juglans re 0.992 1.0 0.911 1e-147
8071628279 putative aquaporin PIP2-2 [Vitis cinerea 0.985 1.0 0.908 1e-147
>gi|171190270|gb|ACB42441.1| aquaporin PIP2;4 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/283 (92%), Positives = 270/283 (95%), Gaps = 5/283 (1%)

Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EEGQ       KDYVDPPPAPLIDMAELK WSFYRALIAEF+ATLLFLYV+VAT
Sbjct: 1   MSKEVSEEGQGR-----KDYVDPPPAPLIDMAELKSWSFYRALIAEFIATLLFLYVTVAT 55

Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGHKKQ DAC GVGLLGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLIR
Sbjct: 56  VIGHKKQQDACDGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIR 115

Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           AVAYMV+QCLGAICGVGLVKAFMKH YNSLGGGANTVASGYN G+ALGAEIIGTFVLVYT
Sbjct: 116 AVAYMVSQCLGAICGVGLVKAFMKHPYNSLGGGANTVASGYNNGTALGAEIIGTFVLVYT 175

Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
           VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA
Sbjct: 176 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 235

Query: 241 WDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 283
           WDDHWIFWVGPFVGALAAA YHQYILRAAAIKALGSFRSNP+N
Sbjct: 236 WDDHWIFWVGPFVGALAAAIYHQYILRAAAIKALGSFRSNPTN 278

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|171190268|gb|ACB42440.1| aquaporin PIP2;3 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|256568425|gb|ACU87556.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|256568423|gb|ACU87555.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|60498693|dbj|BAD90701.1| plasma membrane intrinsic protein 2;5 [Mimosa pudica] Back     alignment and taxonomy information
>gi|225428051|ref|XP_002279366.1| PREDICTED: aquaporin PIP2-7 [Vitis vinifera] gi|374341145|gb|AEZ35023.1| plasma membrane 2;2 aquaporin [Vitis vinifera] Back     alignment and taxonomy information
>gi|395146531|gb|AFN53685.1| putative aquaporin PIP2-8 [Linum usitatissimum] Back     alignment and taxonomy information
>gi|111379080|gb|ABH09327.1| putative aquaporin [Vitis vinifera] gi|124702519|gb|ABN14351.1| aquaporin PIP2;2 [Vitis vinifera] gi|147816494|emb|CAN77349.1| hypothetical protein VITISV_007541 [Vitis vinifera] Back     alignment and taxonomy information
>gi|238814678|gb|ACR56615.1| plasma intrinsic protein 2;5 [Juglans regia] Back     alignment and taxonomy information
>gi|8071628|gb|AAF71820.1|AF141900_1 putative aquaporin PIP2-2 [Vitis cinerea var. helleri x Vitis rupestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.989 1.0 0.886 1.4e-135
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.982 1.0 0.901 3.7e-135
TAIR|locus:2175831291 PIP2;4 "plasma membrane intrin 0.961 0.934 0.787 5.6e-116
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.978 0.965 0.764 2.2e-114
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.925 0.919 0.794 1.2e-113
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.925 0.919 0.794 4.1e-113
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.982 0.972 0.752 5.2e-113
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.929 0.910 0.780 2.9e-112
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.904 0.891 0.757 5.1e-106
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.904 0.895 0.757 6.5e-106
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
 Identities = 251/283 (88%), Positives = 268/283 (94%)

Query:     1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
             MSKEV+EEG+TH   HGKDYVDPPPAPL+DM ELK WSFYRALIAEF+ATLLFLYV+VAT
Sbjct:     1 MSKEVSEEGKTH---HGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVAT 57

Query:    61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
             VIGHKKQ+  C GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct:    58 VIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVR 117

Query:   121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
             A+ YM+AQCLGAICGVG VKAFMK  YN+LGGGANTVA GY+KG+ALGAEIIGTFVLVYT
Sbjct:   118 ALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYT 177

Query:   181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
             VFSATDPKRSARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNN+KA
Sbjct:   178 VFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKA 237

Query:   241 WDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 283
             WDD WIFWVGPF+GALAAAAYHQYILRA+AIKALGSFRSN +N
Sbjct:   238 WDDQWIFWVGPFLGALAAAAYHQYILRASAIKALGSFRSNATN 280
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA;TAS
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IEA;ISS;IDA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175831 PIP2;4 "plasma membrane intrinsic protein 2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25794PIP2_PEANo assigned EC number0.69960.92570.9065N/Ano
Q8GRI8PIP25_ORYSJNo assigned EC number0.74300.96810.9681nono
Q8LAA6PIP15_ARATHNo assigned EC number0.73380.92930.9163nono
P93004PIP27_ARATHNo assigned EC number0.88690.98931.0yesno
Q41870PIP11_MAIZENo assigned EC number0.71090.90100.8885N/Ano
P43287PIP22_ARATHNo assigned EC number0.76570.96810.9614nono
P43286PIP21_ARATHNo assigned EC number0.76490.97870.9651nono
Q84RL7PIP21_MAIZENo assigned EC number0.78390.98580.9620N/Ano
Q8H5N9PIP21_ORYSJNo assigned EC number0.78740.98580.9620nono
P30302PIP23_ARATHNo assigned EC number0.79470.92570.9192nono
Q9AQU5PIP13_MAIZENo assigned EC number0.73430.90450.8767N/Ano
Q8GRT8PIP24_ORYSJNo assigned EC number0.74300.97870.9685nono
Q9AR14PIP15_MAIZENo assigned EC number0.70110.95750.9409N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.83850.98930.9929yesno
P61837PIP11_ARATHNo assigned EC number0.73430.90450.8951nono
Q08451PIP1_SOLLCNo assigned EC number0.74900.88690.8776N/Ano
Q651D5PIP27_ORYSJNo assigned EC number0.72720.92220.9nono
Q08733PIP13_ARATHNo assigned EC number0.75780.90450.8951nono
P61838PIP11_VICFANo assigned EC number0.73430.90450.8951N/Ano
P42767PIP1_ATRCANo assigned EC number0.85210.99290.9964N/Ano
Q06611PIP12_ARATHNo assigned EC number0.73820.90450.8951nono
Q9ATN0PIP16_MAIZENo assigned EC number0.72370.90810.8682N/Ano
Q9ZV07PIP26_ARATHNo assigned EC number0.74910.97520.9550nono
Q6K215PIP22_ORYSJNo assigned EC number0.75340.98580.9687nono
Q39196PIP14_ARATHNo assigned EC number0.74140.92930.9163nono
Q9SV31PIP25_ARATHNo assigned EC number0.75260.98230.9720nono
Q9SXF8PIP13_ORYSJNo assigned EC number0.71480.90450.8888nono
Q7XUA6PIP23_ORYSJNo assigned EC number0.77650.93280.9103nono
Q9XF59PIP12_MAIZENo assigned EC number0.72650.90450.8858N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.76300.96810.9614N/Ano
Q9FF53PIP24_ARATHNo assigned EC number0.78720.96110.9347nono
Q9ZVX8PIP28_ARATHNo assigned EC number0.90100.98231.0nono
Q7XSQ9PIP12_ORYSJNo assigned EC number0.70110.95750.9409nono
Q9ATM4PIP27_MAIZENo assigned EC number0.76650.98580.9721N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.73610.98580.9687N/Ano
Q9ATM6PIP24_MAIZENo assigned EC number0.75690.98580.9687N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.75260.98230.9619N/Ano
Q6EU94PIP11_ORYSJNo assigned EC number0.74600.90450.8858nono
Q9ATM8PIP22_MAIZENo assigned EC number0.76470.98580.9554N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
pfam00230218 pfam00230, MIP, Major intrinsic protein 3e-97
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-79
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 1e-68
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-48
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 3e-38
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-36
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 1e-33
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-28
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 6e-25
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 5e-23
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 9e-23
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 6e-20
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 8e-20
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 6e-04
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 6e-04
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  284 bits (728), Expect = 3e-97
 Identities = 121/230 (52%), Positives = 151/230 (65%), Gaps = 12/230 (5%)

Query: 33  ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVY 92
           EL+  SF+RA+IAEF+ATLLF++  V + +G KK        GLL +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYG-----GLLAVALAFGLALFTLVY 55

Query: 93  CTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG 152
           CT  ISG H+NPAVTF L + R++SL+RA+ Y++AQ LGAICG  L+K          GG
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTN-GLQRAGG 114

Query: 153 GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVH 212
            AN++A G N G A   EII TF LVYTVF+ TD  R+    HV   APL IGFAVF+ H
Sbjct: 115 FANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGFAVFLNH 171

Query: 213 LATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYH 262
           LA  P TG  +NPARSFG AV+      WDDHW++WVGP +GA  AA  +
Sbjct: 172 LAGGPYTGASMNPARSFGPAVVLWK---WDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 283
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.65
PLN00184 296 aquaporin NIP1; Provisional 99.65
PLN00183 274 putative aquaporin NIP7; Provisional 99.57
PLN00182283 putative aquaporin NIP4; Provisional 99.56
PLN00166 250 aquaporin TIP2; Provisional 99.53
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.52
PLN00167 256 aquaporin TIP5; Provisional 99.52
PTZ00016 294 aquaglyceroporin; Provisional 99.5
PRK05420 231 aquaporin Z; Provisional 99.49
PLN00027 252 aquaporin TIP; Provisional 99.47
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.44
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.37
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.34
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.25
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.18
PRK10805285 formate transporter; Provisional 95.51
COG2116265 FocA Formate/nitrite family of transporters [Inorg 94.97
PRK11562268 nitrite transporter NirC; Provisional 94.92
TIGR00790239 fnt formate/nitrite transporter. symport. HCO2 - e 81.54
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-52  Score=363.15  Aligned_cols=231  Identities=53%  Similarity=0.848  Sum_probs=207.7

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHH
Q 023370           33 ELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL  112 (283)
Q Consensus        33 ~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l  112 (283)
                      +...++.+|++++||++|++++|++|+++......   +...+.+.+++++|+.+++.+++++++||||+|||||+++++
T Consensus         4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~   80 (238)
T KOG0223|consen    4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAV   80 (238)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---CCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHH
Confidence            45678899999999999999999999988765531   245578889999999999999999999999999999999999


Q ss_pred             hhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCCCcchhhHHHHHHHHHHHHHHHHH-hccCCCCC
Q 023370          113 ARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSA  191 (283)
Q Consensus       113 ~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~vl~-~~~~~~~~  191 (283)
                      .|++++.++..|+++|++|+++|+.+++.+.+.+++....+.+.+.++.+..++++.|++.||+|++++++ .+|+|+. 
T Consensus        81 ~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~-  159 (238)
T KOG0223|consen   81 GGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS-  159 (238)
T ss_pred             hCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc-
Confidence            99999999999999999999999999999999864445556677888999999999999999999999998 7777664 


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCCCCcceehhhhhHHHHHHHHHHHHHHcchhhh
Q 023370          192 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAI  271 (283)
Q Consensus       192 ~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~~  271 (283)
                            .+.|+.||+++.+.++..+++||++|||||+|||+++++   .|++||+||+||++|+++++++|++++.++++
T Consensus       160 ------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~  230 (238)
T KOG0223|consen  160 ------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPDES  230 (238)
T ss_pred             ------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCccc
Confidence                  478999999999999999999999999999999999976   49999999999999999999999999998855


Q ss_pred             hhccC
Q 023370          272 KALGS  276 (283)
Q Consensus       272 ~~~~~  276 (283)
                      |..++
T Consensus       231 ~~~~~  235 (238)
T KOG0223|consen  231 EPTKS  235 (238)
T ss_pred             cccCc
Confidence            54444

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>TIGR00790 fnt formate/nitrite transporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-142
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-142
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-142
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-141
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-141
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 9e-45
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 1e-43
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 1e-40
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 2e-40
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 2e-40
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 8e-38
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 4e-32
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 2e-31
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 3e-31
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 9e-30
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 2e-29
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 2e-21
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 8e-19
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 5e-18
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 5e-18
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 1e-17
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 2e-17
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 2e-17
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 4e-17
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 3e-16
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 2e-15
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 4e-15
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 8e-14
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 3e-13
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 1e-06
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  501 bits (1290), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/283 (84%), Positives = 261/283 (92%), Gaps = 2/283 (0%)
Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EE Q H+H  GKDYVDPPPAP  D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 1   MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 58
Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGH K++  CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 59  VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLR 118
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           A+ YM+AQCLGAICGVGLVKAFMK  YN  GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 119 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 178
Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
           VFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N++K 
Sbjct: 179 VFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 238
Query: 241 WDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 283
           WDD WIFWVGPF+GA  AAAYHQY+LRAAAIKALGSFRSNP+N
Sbjct: 239 WDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGSFRSNPTN 281
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-147
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-112
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-107
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-105
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-105
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-104
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-104
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 7e-05
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-102
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-102
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-101
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 2e-79
2f2b_A 246 Aquaporin AQPM; protein, integral membrane protein 4e-04
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-50
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 7e-50
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  414 bits (1065), Expect = e-147
 Identities = 237/283 (83%), Positives = 258/283 (91%), Gaps = 2/283 (0%)

Query: 1   MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
           MSKEV+EE Q H+H   KDYVDPPPAP  D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 24  MSKEVSEEAQAHQHG--KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 81

Query: 61  VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
           VIGH K++  CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV L+R
Sbjct: 82  VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLR 141

Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
           A+ YM+AQCLGAICGVGLVKAFMK  YN  GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 142 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 201

Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
           VFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N++K 
Sbjct: 202 VFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 261

Query: 241 WDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN 283
           WDD WIFWVGPF+GA  AAAYHQY+LRAAAIKALG FRSNP+N
Sbjct: 262 WDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSNPTN 304
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.55
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.53
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.44
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.43
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.43
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.42
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.41
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.4
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.39
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.38
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.38
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.36
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.25
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 94.57
3kly_A280 Putative formate transporter 1; membrane protein, 91.27
3tds_E268 Formate/nitrite transporter; membrane protein; HET 90.72
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=3.7e-62  Score=438.01  Aligned_cols=281  Identities=84%  Similarity=1.416  Sum_probs=210.5

Q ss_pred             CccccccccccccccCCCCCCCCCCCCccChhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHH
Q 023370            1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIA   80 (283)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~   80 (283)
                      |.+|+.+|  +|..++.||+++|+..+..+.+|.++++++|++++||+|||+|+|++++++.......+++...+++.++
T Consensus        24 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~ia  101 (304)
T 3cn5_A           24 MSKEVSEE--AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIA  101 (304)
T ss_dssp             ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHH
T ss_pred             HHHHhhcc--ccccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeeh
Confidence            67777442  2344567999999988888889999999999999999999999999999887654433333456788999


Q ss_pred             HHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCchhhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhcCCCCcccCCC
Q 023370           81 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASG  160 (283)
Q Consensus        81 ~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~  160 (283)
                      +++|+++++.+++++++||||+|||||+++++.|+++|.+++.|+++|++||++|+++++.++++.++....+.+.+.++
T Consensus       102 la~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~  181 (304)
T 3cn5_A          102 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALG  181 (304)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTT
T ss_pred             hhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998776665555556677


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHhcCCCC
Q 023370          161 YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA  240 (283)
Q Consensus       161 ~~~~~~~~~E~~~T~~Lv~~vl~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~~~~~~  240 (283)
                      .+..++|+.|+++||+|+++++..+|+++....++.+.+.|+.||+++.++.++++++||++|||||||||+++++++..
T Consensus       182 ~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~  261 (304)
T 3cn5_A          182 YNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV  261 (304)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCC
Confidence            88999999999999999999998888665433222234789999999999999999999999999999999999654567


Q ss_pred             CCcceehhhhhHHHHHHHHHHHHHHcchhhhhhccCCCCCCCC
Q 023370          241 WDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPSN  283 (283)
Q Consensus       241 ~~~~~vy~v~p~~Ga~~a~~~y~~~~~~~~~~~~~~~~~~~~~  283 (283)
                      |+++|+||++|++|+++|+++|++++.+++.+.++++|..++|
T Consensus       262 w~~~WvywvgPiiGa~laa~~y~~l~~~~~~~~~~~~~~~~~~  304 (304)
T 3cn5_A          262 WDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSNPTN  304 (304)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHTTSCCCC-------------
T ss_pred             cCceEEEeehHHHHHHHHHHHHHHHhCCCCCCcccccccCCCC
Confidence            9999999999999999999999999998888888888888776
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A* Back     alignment and structure
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 283
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 7e-55
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-04
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 2e-50
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 0.004
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 1e-41
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 0.003
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-41
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  176 bits (446), Expect = 7e-55
 Identities = 97/239 (40%), Positives = 140/239 (58%), Gaps = 12/239 (5%)

Query: 32  AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA----CGGVGLLGIAWAFGGMI 87
           +E K   F+RA++AEF+A +LF+++S+ + +G      +          + ++ AFG  I
Sbjct: 3   SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62

Query: 88  FVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEY 147
             L      ISG H+NPAVT GL L+ ++S++RA+ Y++AQC+GAI    ++        
Sbjct: 63  ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122

Query: 148 NSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFA 207
           ++   G N +A G N G  LG EIIGT  LV  V + TD +R      +    PL IGF+
Sbjct: 123 DN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIGFS 177

Query: 208 VFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVGALAAAAYHQYIL 266
           V + HL  I  TG GINPARSFG++VI +N   + DHWIFWVGPF+GA  A   + +IL
Sbjct: 178 VALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.48
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.38
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.36
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.35
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-50  Score=353.58  Aligned_cols=225  Identities=28%  Similarity=0.417  Sum_probs=195.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHhcCccccccChHHHHHHHHhhcCch
Q 023370           39 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL  118 (283)
Q Consensus        39 l~~~~~~EfigTf~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~  118 (283)
                      +.|+|++||+|||+|+|++++++.......   ...+.+.+++++|+++++.+++++++||||+|||||+++++.|+++|
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~---~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~   78 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAG---ASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDK   78 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCG
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccC---CCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcH
Confidence            678999999999999999988776544332   34567889999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhhhhHHHHHHHHHhhhhhhhhc-----------------CCCCcccCCCCcchhhHHHHHHHHHHHHHHH
Q 023370          119 IRAVAYMVAQCLGAICGVGLVKAFMKHEYNSL-----------------GGGANTVASGYNKGSALGAEIIGTFVLVYTV  181 (283)
Q Consensus       119 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~v  181 (283)
                      .+.+.|+++|++|+++|+++++.++++.+...                 ...++.+.++.+..++++.|+++|++|++++
T Consensus        79 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~i  158 (254)
T d1fx8a_          79 RKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI  158 (254)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988654321                 1123345667889999999999999999999


Q ss_pred             HHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhcCccCCcccchhhhHHHHh----------cCCCCCCcceehhhhh
Q 023370          182 FSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY----------NNDKAWDDHWIFWVGP  251 (283)
Q Consensus       182 l~~~~~~~~~~~~~~~~~~~l~iG~~v~~~~~~~~~~sG~~~NPA~~l~~~i~~----------~~~~~~~~~~vy~v~p  251 (283)
                      +.+.|++++...   ....|+.+|+.+.......+++||++|||||||||+++.          .++.+|+++|+||++|
T Consensus       159 l~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~vgP  235 (254)
T d1fx8a_         159 LALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP  235 (254)
T ss_dssp             HHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHTT
T ss_pred             HHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhHHH
Confidence            999988775433   357899999999999999999999999999999999984          1246899999999999


Q ss_pred             HHHHHHHHHHHHHHcchh
Q 023370          252 FVGALAAAAYHQYILRAA  269 (283)
Q Consensus       252 ~~Ga~~a~~~y~~~~~~~  269 (283)
                      ++|+++|+++||+++..+
T Consensus       236 ~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         236 IVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999999998654
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure