Citrus Sinensis ID: 023380

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MEPFAPKSSILASSSDSESCQNSSLLREEKAFQFQEKEMDEDAALTGREEKTSVKKVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKSGPCRKERYECWRTATATKESKKENYSFKES
Secondary Structure (PSIPRED)
cccccccccEEEEcccccccccccHHHHHHHHccccccccHHHHccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccHHHccccEEEEEEcccccccccccccEEEEEEcccccccccEEEEEcEEEEEEEEEccccEEEEEEcccHHHHHHHHHccEEEEccccHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccccccccccccccccccccccccccccEEccccccccHHcccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEcccccccEEEEEEccccEEcccccccEEEEEEcccccccccEEEEccEEEEEEEEEcccEEEEEEccccHHHHHHHHHHHEEEcccccccHccHcccccccccEccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
mepfapkssilasssdsescqnssLLREEKAFQFQEKEMDEDAALTGREEKTSVKKvskekspkkglkspkkekDVINNVkrkgnndhedAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVEcegesvdlsgdmgavgrilvpgtaegnHEMFLDLKGtiykttlvpsrtfcivsfghsEAKIEAIMNDFIqlkpqsnvyeAETMVEGTldgflfdsedESDKLAKamphqidqndgieeqtnektkvksgpcrkeryECWRTATatkeskkenysfkes
Flexible Loop (DISEMBL)
mepfapkssilasssdsescqNSSLLREEKAFQFQEKEMdedaaltgreektsvkkvskekspkkglkspkkekdvinnvkrkgnndhedaeediaekrsmlnvSTSTLPLVMSEKLQRTKALVECEGesvdlsgdmgaVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMphqidqndgieeqtnektkvksgpcrkeryecwrtatatkeskkenysfkes
Low Complexity Region (SEG)
MEPFAPKssilasssdsescqnssLLREEKAFQFQEKEMDEDAALTGReektsvkkvskekspkkglkspkkekDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKSGPCRKERYECWRTATATKESKKENYSFKES
Disordered region (IsUnstruct)
************************************************************************************************************************KALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLF********************************************CW*******************
Disordered Region (DISOPRED)
******K******************************************************************************************************PLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPG******EMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSE**************************************************************
Disordered Region (DISEMBL)
*************************LREEKAFQFQEK************************************KDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQ************RKERYECWRTATAT*************
Disordered Region (DISPRO)
**********************************************************************************************************STLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFD****************************************RYECWRTATAT*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPFAPKSSILASSSDSESCQNSSLLREEKAFQFQEKEMDEDAALTGREEKTSVKKVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKSGPCRKERYECWRTATATKESKKENYSFKES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q9FLU1	454	DNA-binding protein BIN4	yes	no	0.491	0.306	0.690	5e-53

>sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2

 Score =  207 bits (528), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 119/142 (83%), Gaps = 3/142 (2%)

Query: 105 STSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY 164
           S+S LPLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T     +M+LDLKGTIY
Sbjct: 271 SSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT---TGDMYLDLKGTIY 327

Query: 165 KTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDES 224
           K+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+DES
Sbjct: 328 KSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDES 387

Query: 225 DKLAKAMPHQIDQNDGIEEQTN 246
           +K AK      DQ+ G EE+TN
Sbjct: 388 NKNAKTAVKPADQSVGTEEETN 409


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.125    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,117,110
Number of Sequences: 539616
Number of extensions: 4144204
Number of successful extensions: 20258
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 18124
Number of HSP's gapped (non-prelim): 1675
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)

Component of the DNA topoisomerase VI complex. Binds to DNA. Required for chromatin organization and progression of endoreduplication cycles. The loss of BIN4 activates the ATM- and ATR-dependent DNA damage responses in postmitotic cells and induces the ectopic expression of the mitotic G2/M-specific cyclin B1;1 gene in non-dividing cells.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
359490779	397	PREDICTED: uncharacterized protein LOC10	0.883	0.629	0.582	2e-75
224121130	187	predicted protein [Populus trichocarpa]	0.544	0.823	0.742	6e-62
357464307	416	DNA-binding protein BIN4 [Medicago trunc	0.840	0.572	0.513	2e-56
356507532	380	PREDICTED: uncharacterized protein LOC10	0.650	0.484	0.592	3e-56
449459184	391	PREDICTED: uncharacterized protein LOC10	0.872	0.631	0.459	7e-55
218190056	342	hypothetical protein OsI_05847 [Oryza sa	0.759	0.628	0.497	2e-52
297812657	492	predicted protein [Arabidopsis lyrata su	0.727	0.418	0.475	4e-52
45736025	320	unknown protein [Oryza sativa Japonica G	0.636	0.562	0.560	7e-52
115444213	342	Os02g0147700 [Oryza sativa Japonica Grou	0.759	0.628	0.493	8e-52
218189675	473	hypothetical protein OsI_05068 [Oryza sa	0.727	0.435	0.5	1e-51

>gi|359490779|ref|XP_002269798.2| PREDICTED: uncharacterized protein LOC100252112 [Vitis vinifera] gi|302144012|emb|CBI23117.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/280 (58%), Positives = 201/280 (71%), Gaps = 30/280 (10%)

Query: 2   EPFAPKSSILASSSDSESCQNSSLLREE----------KAFQFQEKEMDEDAALTGREEK 51
           EP AP  S+   SSDSESC ++S +RE+          K  QF +KE  +DA L+   ++
Sbjct: 98  EPNAPNHSVWKLSSDSESCPDNSSMREDYIHHEESSVHKTTQFPDKE--KDAVLSENGQE 155

Query: 52  TSVKKVSKEKSPKKGLKSPKKEKDVINNVKRKGNND-----HEDA----EEDIAEKRSML 102
           + + + SKEKSPKK +K     +D I++ K+K N+D     H+D     EE+ ++K +  
Sbjct: 156 SLLNEASKEKSPKKRVKV----EDHISSKKKKANSDMKGKGHDDGTELLEEEASDKHTEP 211

Query: 103 NVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGT 162
            VS S LPLV+SEK+ R+KALVECEGES+DLSGDMGAVGRI++  T   NHEMFLDLKGT
Sbjct: 212 QVS-SGLPLVLSEKVHRSKALVECEGESIDLSGDMGAVGRIVILDTPSRNHEMFLDLKGT 270

Query: 163 IYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSED 222
           IYKTT+VPSRTFCIVSFG SEAK+EA+MNDFIQLKPQSNVYEAETMVEG L+GF FDS+D
Sbjct: 271 IYKTTIVPSRTFCIVSFGQSEAKVEAVMNDFIQLKPQSNVYEAETMVEGILEGFSFDSDD 330

Query: 223 ESDKLAKAMPHQIDQNDGIEEQTNEKTKVK----SGPCRK 258
           E+DK+ KA   Q DQN+G EEQTN KTK K    SG  RK
Sbjct: 331 EADKMPKASTRQTDQNEGDEEQTNGKTKGKAEKASGVVRK 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121130|ref|XP_002318505.1| predicted protein [Populus trichocarpa] gi|222859178|gb|EEE96725.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 135/159 (84%), Gaps = 5/159 (3%)

Query: 106 TSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYK 165
           TS LPLV+SEK+QR+KALVECEGES+DLSGDMGAVGR+++P T  GN EM+LDLKGTIY+
Sbjct: 1   TSRLPLVLSEKVQRSKALVECEGESIDLSGDMGAVGRVVIPDTPSGNSEMYLDLKGTIYR 60

Query: 166 TTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVE-GTLDGFLFDSEDES 224
           TT+VPSRTFC+VSFG SEAKIEAIMNDFIQLK QSNVYEAETMVE GTL+GF FDSEDE+
Sbjct: 61  TTIVPSRTFCVVSFGQSEAKIEAIMNDFIQLKTQSNVYEAETMVEVGTLEGFSFDSEDET 120

Query: 225 DKLAKAMPHQIDQNDGIEEQTNEKTKVK----SGPCRKE 259
           DK+ KA   Q DQN+G+EE  N KTK K    SG  RK+
Sbjct: 121 DKITKATALQTDQNEGVEEPANGKTKRKPVKSSGVARKK 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464307|ref|XP_003602435.1| DNA-binding protein BIN4 [Medicago truncatula] gi|355491483|gb|AES72686.1| DNA-binding protein BIN4 [Medicago truncatula]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/261 (51%), Positives = 172/261 (65%), Gaps = 23/261 (8%)

Query: 9   SILASSSDSESCQNSSLLREEKAFQFQEKEM-----DEDAALTGREEKTSVKKVSKEK-- 61
           S+   SSDSESC++ S   E++  Q + K        ED  L   + K+  KK SK K  
Sbjct: 126 SMWELSSDSESCRDHSPKTEDQIDQVETKPQTSQPPGEDGLLRDNDGKSPSKKASKAKAS 185

Query: 62  ---------SPKKGLKSPKKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLV 112
                    +P KG K+       +N   + G+ D E  +E+  EK    NVS+S LPL+
Sbjct: 186 QKQTDLEDCTPVKGKKT------KVNAKGKGGDGDVEVKDEETFEKPVEPNVSSSILPLM 239

Query: 113 MSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSR 172
           +SEK+ RTKALVEC+G+S+DLSGDMGAVGR+++  +  G+ EM LDLKGTIYKT+++PSR
Sbjct: 240 LSEKVHRTKALVECQGDSIDLSGDMGAVGRVIISDSPSGDQEMCLDLKGTIYKTSIIPSR 299

Query: 173 TFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMP 232
           TFC+VSFG +EAKIEAIMNDFIQL P S+VYEAETMVEGTLDGF FDS++E  K  K   
Sbjct: 300 TFCVVSFGQTEAKIEAIMNDFIQLNPPSDVYEAETMVEGTLDGFSFDSDEEDGKRQKTT- 358

Query: 233 HQIDQNDGIEEQTNEKTKVKS 253
           H  DQN+  EEQT  K+K K+
Sbjct: 359 HPSDQNEHAEEQTPGKSKRKA 379

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507532|ref|XP_003522518.1| PREDICTED: uncharacterized protein LOC100795660 [Glycine max]

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 115/194 (59%), Positives = 147/194 (75%), Gaps = 10/194 (5%)

Query: 69  SPKKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNV---STSTLPLVMSEKLQRTKALVE 125
           +P K K++  + K KG  D +  EE+  EK +  NV   S++ LPL++SEK+QRTKAL+E
Sbjct: 151 TPVKGKEIKASAKGKGIGDLKVEEEETCEKPAEPNVRMVSSARLPLMLSEKVQRTKALIE 210

Query: 126 CEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLK------GTIYKTTLVPSRTFCIVSF 179
           C+G+S+DLSGDMGAVGRI++  +  G+ EM LDLK      GTIYKT++VP RTFC+VSF
Sbjct: 211 CQGDSIDLSGDMGAVGRIIISDSPSGDQEMCLDLKDFAVISGTIYKTSIVPCRTFCVVSF 270

Query: 180 GHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQND 239
           G SEAK+EAIMNDFIQLKP SNVYEAETMVEGTLDGF FDS++ES K+ K+  +Q DQN+
Sbjct: 271 GQSEAKVEAIMNDFIQLKPHSNVYEAETMVEGTLDGFFFDSDEESGKIQKST-NQTDQNE 329

Query: 240 GIEEQTNEKTKVKS 253
             EEQ N  +K K+
Sbjct: 330 NAEEQANGNSKGKA 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459184|ref|XP_004147326.1| PREDICTED: uncharacterized protein LOC101208657 [Cucumis sativus]

 Score =  220 bits (560), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 130/283 (45%), Positives = 183/283 (64%), Gaps = 36/283 (12%)

Query: 7   KSSILASSSDSESCQNSSLLREEKAF----------QFQEKEMDEDAALTGREEKTSVKK 56
           K S+   S DSESC +++ ++E+ ++          + Q +  DE+A     E K+  +K
Sbjct: 85  KHSVWMLSLDSESCSDNNFIKEDYSYHEELAELATSEIQGRRKDENAGRRFTEGKSKSRK 144

Query: 57  VSKEKSPKKGLKS---PKKEKDVINNVKRKGNNDHEDAEE-------DIAEKRSMLN--- 103
           VS E SPKK +KS      +++++N+   KG +  E +E        +I EK ++ +   
Sbjct: 145 VSNEMSPKKKVKSEVCTSAKENIMNSGTNKGGSTMEGSEGHVRNGDVEILEKDALDDCIG 204

Query: 104 --VSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKG 161
             VS+S LPLV+S+K  R KALVECEG S+DLSGDMGAVGR++V  ++   +E+ LDLKG
Sbjct: 205 PPVSSSRLPLVLSDKAHRLKALVECEGTSIDLSGDMGAVGRVVVSDSSSAKNELCLDLKG 264

Query: 162 TIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSE 221
           T+Y+  +VPSRTFCIVSFG SEAKIE+IMNDFIQLK  S V EAETMVEGTLDGF FDSE
Sbjct: 265 TLYRAVIVPSRTFCIVSFGQSEAKIESIMNDFIQLKALSKVDEAETMVEGTLDGFSFDSE 324

Query: 222 DESDKLAKAMPHQIDQNDGIE----------EQTNEKTKVKSG 254
           D+++K+ KA     DQN+ +E          E+++ + +VK+G
Sbjct: 325 DDAEKITKAAS-PADQNEPVEGLNTKSKNKAEKSSGRKRVKTG 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218190056|gb|EEC72483.1| hypothetical protein OsI_05847 [Oryza sativa Indica Group]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 151/227 (66%), Gaps = 12/227 (5%)

Query: 56  KVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHED----------AEEDIAEKRSMLNVS 105
           K  K  +PKK L  P    +       K   D  D          AEED+ +K +  +VS
Sbjct: 100 KPPKRSTPKKKLVKPPSGSNASKVTGPKAGPDQIDDTLEHQEEGVAEEDMQDKLTEHSVS 159

Query: 106 TSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYK 165
              LPL++ +K+QR+KAL+EC+G+S+DLSGD+GAVGRI++  +  GN E+ LDLKGTIYK
Sbjct: 160 -QRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPNGNQELLLDLKGTIYK 218

Query: 166 TTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESD 225
           +T+VPSRTFC+VS G +EAKIE+IM+DFIQL+PQSN++EAETM+EGTLDGF FDS++E D
Sbjct: 219 STIVPSRTFCVVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMMEGTLDGFTFDSDEEGD 278

Query: 226 KLAKAMPHQIDQNDGIEEQTNEKTKVKS-GPCRKERYECWRTATATK 271
           KL +    Q DQN+   +Q   KTK K+  P  K + +      ATK
Sbjct: 279 KLPEPHASQNDQNNEDGDQPKAKTKRKAEKPAGKGQKKAKVAGKATK 325

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812657|ref|XP_002874212.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320049|gb|EFH50471.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/267 (47%), Positives = 163/267 (61%), Gaps = 61/267 (22%)

Query: 38  EMDEDAALTGREEKTSVKKVSKEKSPK----KGLKSPKK----------EKDVIN----- 78
           E DED  L   EE+ +VKKV KEKSPK     G K+PK+          E  VIN     
Sbjct: 184 EKDEDFVLDATEEEPAVKKVGKEKSPKTKSKSGRKTPKEGNGAQKIFKSEDKVINTTIAE 243

Query: 79  -----------------------NVKRKGNNDHEDAEEDIAEKRSM------LNVSTSTL 109
                                  + ++   ++ +D +  IAE+ +M       + S+S L
Sbjct: 244 EVTMEKSPETKSKSSRKTPKEENSAQKIFKSEDKDTDTTIAEEGTMDQKIKPSSGSSSRL 303

Query: 110 PLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKG-------- 161
           PLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T     +M+LDLKG        
Sbjct: 304 PLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT---GDMYLDLKGINTFSFHV 360

Query: 162 --TIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFD 219
             TIYK+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+
Sbjct: 361 SGTIYKSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLTPQSNVYEAETMVEGTLEGFSFE 420

Query: 220 SEDESDKLAKAMPHQIDQNDGIEEQTN 246
           S+DE++K AK      DQ+ G EE+TN
Sbjct: 421 SDDETNKNAKTASKPADQSGGTEEETN 447

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45736025|dbj|BAD13052.1| unknown protein [Oryza sativa Japonica Group] gi|45736067|dbj|BAD13093.1| unknown protein [Oryza sativa Japonica Group]

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 102/182 (56%), Positives = 139/182 (76%), Gaps = 2/182 (1%)

Query: 91  AEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAE 150
           AEE++ +K +  +VS   LPL++ +K+QR+KAL+EC+G+S+DLSGD+GAVGRI++  +  
Sbjct: 123 AEEEMQDKLTEHSVS-QRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPN 181

Query: 151 GNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVE 210
           GN E+ LDLKGTIYK+T+VPSRTFC+VS G +EAKIE+IM+DFIQL+PQSN++EAETM+E
Sbjct: 182 GNQELLLDLKGTIYKSTIVPSRTFCVVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMME 241

Query: 211 GTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKS-GPCRKERYECWRTATA 269
           GTLDGF FDS++E DKL +    Q DQN+   +Q   KTK K+  P  K + +      A
Sbjct: 242 GTLDGFTFDSDEEGDKLPEPHASQNDQNNEDGDQPKAKTKRKAEKPAGKGQKKAKVAGKA 301

Query: 270 TK 271
           TK
Sbjct: 302 TK 303

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115444213|ref|NP_001045886.1| Os02g0147700 [Oryza sativa Japonica Group] gi|113535417|dbj|BAF07800.1| Os02g0147700 [Oryza sativa Japonica Group] gi|215765268|dbj|BAG86965.1| unnamed protein product [Oryza sativa Japonica Group] gi|222622166|gb|EEE56298.1| hypothetical protein OsJ_05371 [Oryza sativa Japonica Group]

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 112/227 (49%), Positives = 151/227 (66%), Gaps = 12/227 (5%)

Query: 56  KVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHED----------AEEDIAEKRSMLNVS 105
           K  K  +PKK L  P    +       K   D  D          AEE++ +K +  +VS
Sbjct: 100 KPPKRSTPKKKLVKPPSGSNASKVTGPKAGPDQIDDTLEHQEEGVAEEEMQDKLTEHSVS 159

Query: 106 TSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYK 165
              LPL++ +K+QR+KAL+EC+G+S+DLSGD+GAVGRI++  +  GN E+ LDLKGTIYK
Sbjct: 160 -QRLPLIIPDKIQRSKALIECDGDSIDLSGDVGAVGRIIISNSPNGNQELLLDLKGTIYK 218

Query: 166 TTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESD 225
           +T+VPSRTFC+VS G +EAKIE+IM+DFIQL+PQSN++EAETM+EGTLDGF FDS++E D
Sbjct: 219 STIVPSRTFCVVSVGQTEAKIESIMDDFIQLEPQSNLFEAETMMEGTLDGFTFDSDEEGD 278

Query: 226 KLAKAMPHQIDQNDGIEEQTNEKTKVKS-GPCRKERYECWRTATATK 271
           KL +    Q DQN+   +Q   KTK K+  P  K + +      ATK
Sbjct: 279 KLPEPHASQNDQNNEDGDQPKAKTKRKAEKPAGKGQKKAKVAGKATK 325

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189675|gb|EEC72102.1| hypothetical protein OsI_05068 [Oryza sativa Indica Group]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/220 (50%), Positives = 154/220 (70%), Gaps = 14/220 (6%)

Query: 47  GREEKTSVK----KVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHED---------AEE 93
           G++EK +++    K +K  +PKK +K P           + G +  +D         AE 
Sbjct: 219 GKDEKPTMESNQDKPAKRSTPKKLVKFPSSSNASKVTGPKAGPDQIDDTLEHREEGVAEV 278

Query: 94  DIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNH 153
           D+ +K +  +VS   LPL++ +K+QR+KAL+EC+G+S+DLSGD+GAVGRI++  +  GN 
Sbjct: 279 DMQDKLTEHSVS-QRLPLIIPDKVQRSKALIECDGDSIDLSGDVGAVGRIVISNSPNGNQ 337

Query: 154 EMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTL 213
           ++ LDLKGTIYK+T+VPSRTFC+VS G +EAKIE+IMNDFIQL+PQSN++EAETMVEGTL
Sbjct: 338 DLLLDLKGTIYKSTIVPSRTFCVVSVGQTEAKIESIMNDFIQLEPQSNLFEAETMVEGTL 397

Query: 214 DGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKS 253
           DGF FDS++E DKL +    Q DQN+   +Q   KTK K+
Sbjct: 398 DGFTFDSDEEGDKLPEPHASQNDQNNEDGDQPKAKTKRKA 437

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2153939	454	BIN4 "AT5G24630" [Arabidopsis	0.515	0.321	0.684	2.5e-49

TAIR|locus:2153939 BIN4 "AT5G24630" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 102/149 (68%), Positives = 124/149 (83%)

Query:   105 STSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY 164
             S+S LPLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T  G  +M+LDLKGTIY
Sbjct:   271 SSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT-G--DMYLDLKGTIY 327

Query:   165 KTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDES 224
             K+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+DES
Sbjct:   328 KSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDES 387

Query:   225 DKLAKAMPHQIDQNDGIEEQTNEKTKVKS 253
             +K AK      DQ+ G EE+TN K K K+
Sbjct:   388 NKNAKTAVKPADQSVGTEEETNTKAKPKA 416


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.128   0.356    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       240   0.00093  113 3  11 23  0.38    34
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  173 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.74u 0.08s 21.82t   Elapsed:  00:00:02
  Total cpu time:  21.74u 0.08s 21.82t   Elapsed:  00:00:02
  Start:  Thu May  9 23:39:01 2013   End:  Thu May  9 23:39:03 2013

GO:0009913 "epidermal cell differentiation" evidence=IMP

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IPI

GO:0010090 "trichome morphogenesis" evidence=RCA;IMP

GO:0030307 "positive regulation of cell growth" evidence=IMP

GO:0042023 "DNA endoreduplication" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0051276 "chromosome organization" evidence=RCA;IMP

GO:0000003 "reproduction" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0003002 "regionalization" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0006325 "chromatin organization" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033043 "regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 28/246 (11%), Positives = 75/246 (30%), Gaps = 76/246 (30%)

Query: 21  QNSSLLREEKAFQFQEKEM--DEDAALTGREEKTSVKKVSKEKSPKKGLKSPKKEKDVIN 78
           QN+       AF    K +       +T      +   +S +      L           
Sbjct: 254 QNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH-HSMTL----------- 298

Query: 79  NVKRKGNNDHEDAEEDIAEKRSMLNVSTSTL--------PLVMS---EKLQRTKAL---- 123
                     ++ +  + +    L+     L        P  +S   E ++   A     
Sbjct: 299 --------TPDEVKSLLLKY---LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 124 --VECE--GESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY-KTTLVPSRTFCIVS 178
             V C+     ++ S +      +L P       +MF  L  +++  +  +P+    ++ 
Sbjct: 348 KHVNCDKLTTIIESSLN------VLEPAEYR---KMFDRL--SVFPPSAHIPTILLSLIW 396

Query: 179 FGHSEAKIEAIMNDF-----IQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPH 233
           F   ++ +  ++N       ++ +P+ +          ++     + + + +       H
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTI--------SIPSIYLELKVKLENEYAL--H 446

Query: 234 Q--IDQ 237
           +  +D 
Sbjct: 447 RSIVDH 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00