Citrus Sinensis ID: 023389

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEccccEEEEEc
Coil and Loop (DISEMBL)
mersayvsypyengvmmtrdpkprlrwtaDLHDRFVDAVtklggpdkatpKSVLRLMGLKGLTLYHLKSHLQKYRLGQQtrrqhgadqhkennggssfvnfyngslatsmtssrgdedqgpisEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSlsvdssvtgnvnAEAARDQLTTFNLAISNLMESMNeqdrkgnatEFNDMikkgnangssfrvqgdcgeregnegdnkhkvdggsthfdlntkgsydfngiaangiglgpstmlsyn
Flexible Loop (DISEMBL)
mersayvsypyengvmmtrdpkpRLRWTADLHDRFVDAvtklggpdkatpksVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQHGadqhkennggssFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKkgnangssfrvQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANgiglgpstmlsyn
Low Complexity Region (SEG)
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAevqqrlqeqlevqerlqMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Disordered region (IsUnstruct)
********YPYENGVMM*****PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL***************************************************************************AQGKYLQAIL*************************LTTFNLAI**************************************************************NTKGSYDFNGIAANGIG**********
Disordered Region (DISOPRED)
*************************RWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR*********************************************************************************************************************************************************************************************************S******
Disordered Region (DISEMBL)
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL**************ENNGGSSFVNFYNGSLATS***********PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Disordered Region (DISPRO)
**********************PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQT**************************************QGPISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS*****************************************************************************VDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAEVxxxxxxxxxxxxxxxxxxxxxGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSYN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.522	0.413	0.537	3e-43
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.466	0.319	0.452	2e-28
Q700D9	255	Putative Myb family trans	no	no	0.204	0.227	0.637	7e-15
Q93WJ9	403	Transcription repressor K	no	no	0.212	0.148	0.616	9e-15
Q9C616	388	Probable transcription fa	no	no	0.204	0.149	0.637	2e-14
Q0J235	532	Probable transcription fa	no	no	0.254	0.135	0.554	3e-14
Q9FJV5	276	Probable transcription fa	no	no	0.187	0.192	0.660	7e-14
Q941I2	322	Probable transcription fa	no	no	0.212	0.186	0.583	2e-13
Q9ZWJ9	664	Two-component response re	no	no	0.240	0.102	0.492	2e-11
Q940D0	690	Two-component response re	no	no	0.240	0.098	0.492	3e-11

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  175 bits (444), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/158 (53%), Positives = 118/158 (74%), Gaps = 10/158 (6%)

Query: 12  ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
           ++G+++T DPKPRLRWT +LH+RFVDAV +LGGPDKATPK+++R+MG+KGLTLYHLKSHL
Sbjct: 24  DSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83

Query: 72  QKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAE 131
           QK+RLG+Q  +++G    KE +  S+     N + ++ M S   +E           Q E
Sbjct: 84  QKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNE----------MQME 133

Query: 132 VQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 169
           VQ+RL EQLEVQ  LQ+RIEAQGKY+Q+IL++A ++L+
Sbjct: 134 VQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLA 171

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 97/148 (65%), Gaps = 16/148 (10%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ--- 78
           K R+RWT +LH+ FV+AV +LGG ++ATPK+VL+L+   GLT+YH+KSHLQKYR  +   
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query: 79  QTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAEVQQRLQE 138
           +T    G  Q K+    +S  +  +  + TS+           I++AL+ Q EVQ+RL E
Sbjct: 291 ETSEVTGEPQEKK---MTSIEDIKSLDMKTSVE----------ITQALRLQMEVQKRLHE 337

Query: 139 QLEVQERLQMRIEAQGKYLQAILQKAQK 166
           QLE+Q  LQ++IE QG+YLQ + +K QK
Sbjct: 338 QLEIQRSLQLQIEKQGRYLQMMFEKQQK 365

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 43/58 (74%)

Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
           R P PRLRWT +LH  FV AV  LGG  KATPK VL++M +KGLT+ H+KSHLQ YR
Sbjct: 19 VRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 45/60 (75%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRR 82
           PR+RWT+ LH RFV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR  + T +
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 43/58 (74%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQT 80
           PR+RWT  LH RFV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR  + T
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 271

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRR 82
           PR+RWT+ LH RFV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR  + T +
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Query: 83  QHGADQHKENNGGS 96
              A      +GGS
Sbjct: 385 P--AASSGPADGGS 396

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 41/53 (77%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
           PR+RWT+ LH  FV AV  LGG ++ATPKSVL LM +K LTL H+KSHLQ YR
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 158

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query: 23  PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRR 82
           PR+RWT  LH  FV AV  LGG ++ATPKSVL LM ++ LTL H+KSHLQ YR  + T +
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
           KPR+ W+ +LH +FV AV +LG  DKA PK +L +M + GLT  ++ SHLQKYR+    R
Sbjct: 216 KPRVVWSVELHQQFVAAVNQLGV-DKAVPKKILEMMNVPGLTRENVASHLQKYRI--YLR 272

Query: 82  RQHGADQHKEN 92
           R  G  QH+ N
Sbjct: 273 RLGGVSQHQGN 283

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 3/71 (4%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
           KPR+ W+ +LH +FV AV +LG  +KA PK +L LM + GLT  ++ SHLQKYR+    R
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLGV-EKAVPKKILELMNVPGLTRENVASHLQKYRI--YLR 293

Query: 82  RQHGADQHKEN 92
           R  G  QH+ N
Sbjct: 294 RLGGVSQHQGN 304

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
356495941	270	PREDICTED: myb family transcription fact	0.901	0.944	0.624	3e-78
224071437	279	predicted protein [Populus trichocarpa]	0.929	0.942	0.589	6e-76
359474709	261	PREDICTED: myb family transcription fact	0.886	0.961	0.572	2e-72
224138332	231	predicted protein [Populus trichocarpa]	0.798	0.978	0.580	3e-71
440583724	286	similar to myb family transcription fact	0.893	0.884	0.564	1e-69
255557857	260	transcription factor, putative [Ricinus	0.886	0.965	0.549	1e-68
449453324	261	PREDICTED: myb family transcription fact	0.865	0.938	0.543	3e-68
357484737	323	Myb family transcription factor-related	0.904	0.792	0.572	6e-67
225879090	280	hypothetical protein [Arabidopsis thalia	0.943	0.953	0.529	5e-66
297791167	280	hypothetical protein ARALYDRAFT_356449 [	0.936	0.946	0.529	3e-65

>gi|356495941|ref|XP_003516829.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 171/274 (62%), Positives = 210/274 (76%), Gaps = 19/274 (6%)

Query: 13  NGVMMT--RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70
           NGV+MT  RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH
Sbjct: 10  NGVIMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 69

Query: 71  LQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQG--PISEALKC 128
           LQKYRLGQQ ++Q+  + HKEN+   S+VNF N SLA + TS RGD++ G  PI+EAL+C
Sbjct: 70  LQKYRLGQQAQKQN-EEVHKENS-RCSYVNFSNRSLAPN-TSYRGDDEGGEIPIAEALRC 126

Query: 129 QAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 188
           Q EVQ+RL+EQL+VQ++LQMRIEAQGKYLQ++L+KAQ+SLS+D    G  + EA+R +LT
Sbjct: 127 QIEVQKRLEEQLKVQKKLQMRIEAQGKYLQSVLEKAQRSLSLD----GPGSLEASRAELT 182

Query: 189 TFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVD 248
            FN A+SN ME+MN +D K N  E N+   K  ++GS+F  Q + G RE N  D K KV+
Sbjct: 183 EFNSALSNFMENMN-KDSKQNIIEVNNFYSK--SHGSAFYNQ-EVG-REQNR-DQKPKVE 236

Query: 249 GGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 282
           GGS  FDLN KGS D   ++A G  +  + + SY
Sbjct: 237 GGSIQFDLNIKGSNDL--VSAGGAEMDANMVSSY 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071437|ref|XP_002303459.1| predicted protein [Populus trichocarpa] gi|222840891|gb|EEE78438.1| predicted protein [Populus trichocarpa]

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 164/278 (58%), Positives = 192/278 (69%), Gaps = 15/278 (5%)

Query: 8   SYPYENGV-MMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYH 66
           SYPYENGV MMTRDP+PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYH
Sbjct: 12  SYPYENGVVMMTRDPRPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYH 71

Query: 67  LKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPIS--E 124
           LKSHLQKYRLGQQ RRQ+  +Q KE     S V    G       S +       IS  E
Sbjct: 72  LKSHLQKYRLGQQARRQNNTEQSKE-----SRVRAPQGQAPVHQESMKNKVQYREISVAE 126

Query: 125 ALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAAR 184
           AL CQ EVQ+ LQE+LEVQ++LQMRIEAQGKYLQAIL+KAQKSLS + +   N   +A R
Sbjct: 127 ALNCQIEVQKTLQEKLEVQKKLQMRIEAQGKYLQAILEKAQKSLSQNLNDDSNGKLKATR 186

Query: 185 DQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNK 244
             LT FN A+ +LME++N +DRK + T+   +  K N      + +G   E +    D K
Sbjct: 187 AHLTGFNSAVYSLMENLNAEDRKPSITDLKGINMKENGPAMHIQREGQTQETK----DVK 242

Query: 245 HKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 282
           H + G S +FDLNTKG+YDF  ++ANG  L    MLSY
Sbjct: 243 HHLQGDSINFDLNTKGNYDF--VSANGSEL-ELKMLSY 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474709|ref|XP_002264257.2| PREDICTED: myb family transcription factor APL-like [Vitis vinifera] gi|296088397|emb|CBI37388.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/276 (57%), Positives = 193/276 (69%), Gaps = 25/276 (9%)

Query: 11  YENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70
           YENGV+MTRDP+PRLRWT DLHDRFVDAVTKLGGP KATPKSVLRLMGLKGLTLYHLKSH
Sbjct: 5   YENGVVMTRDPRPRLRWTPDLHDRFVDAVTKLGGPHKATPKSVLRLMGLKGLTLYHLKSH 64

Query: 71  LQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGP-ISEALKCQ 129
           LQKYRLGQQ+R+Q   +        S +    +G+ A S  SSR +E  G  I+EA++CQ
Sbjct: 65  LQKYRLGQQSRKQSITE-------NSDYRTHASGTSAKS--SSRNNEQGGILIAEAVRCQ 115

Query: 130 AEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTT 189
            EVQ++L EQ+EVQ++LQMRIEAQGKYLQA+L KAQ+SLS++ +  G++  EA R QLT 
Sbjct: 116 VEVQKQLLEQIEVQKKLQMRIEAQGKYLQAVLDKAQQSLSINVNCPGSL--EAMRAQLTN 173

Query: 190 FNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNE---GDNKHK 246
           FN+A+S+L E+ NE+D K N  E    I    ANGS F        RE  E    D K +
Sbjct: 174 FNMALSSLTENTNEEDMKVNIIE--KSIPSNRANGSVF-----TAYREAEELVNKDVKFR 226

Query: 247 VDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 282
              G  HFDLNTKG+Y+F G  ANG     + M++Y
Sbjct: 227 EGEGFRHFDLNTKGNYEFAG--ANGADF-EAKMIAY 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138332|ref|XP_002326576.1| predicted protein [Populus trichocarpa] gi|222833898|gb|EEE72375.1| predicted protein [Populus trichocarpa]

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 155/267 (58%), Positives = 182/267 (68%), Gaps = 41/267 (15%)

Query: 19  RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ 78
           RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 
Sbjct: 1   RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGH 60

Query: 79  QTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAEVQQRLQE 138
           Q RRQ+ ++Q +E+                             ++EAL  Q EVQ+ LQE
Sbjct: 61  QARRQNISEQSRESR----------------------------VAEALDSQIEVQKTLQE 92

Query: 139 QLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLM 198
           QLEVQ++LQMRIEAQGKYLQ+IL+KAQKSLS + +  GN N EA R QLT FNLAIS+L+
Sbjct: 93  QLEVQQKLQMRIEAQGKYLQSILEKAQKSLSQNLNDDGNGNLEATRAQLTGFNLAISSLI 152

Query: 199 ESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGN---EGDNKHKVDGGSTHFD 255
           E++N +DRK   T+   +      NGS+  +     +REG      D KH + G S HFD
Sbjct: 153 ENLNAEDRKPCITDLKGV--NIRTNGSAIHI-----DREGQTQETKDVKHHLQGDSIHFD 205

Query: 256 LNTKGSYDFNGIAANGIGLGPSTMLSY 282
           LNTKG+YDF  +AANG  L    MLSY
Sbjct: 206 LNTKGTYDF--VAANGSEL-ELKMLSY 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440583724|emb|CCH47226.1| similar to myb family transcription factor APL [Lupinus angustifolius]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 157/278 (56%), Positives = 193/278 (69%), Gaps = 25/278 (8%)

Query: 14  GVMM--TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
           GVMM  TRD KPRLRWT DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL
Sbjct: 18  GVMMSMTRDTKPRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 77

Query: 72  QKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQG--------PIS 123
           QKYRLGQ TR+Q+  + HKEN    S+VNF + S +   T  RGD ++G        PI+
Sbjct: 78  QKYRLGQHTRKQN-EEPHKENT-RCSYVNFSSHS-SEPNTIYRGDNEKGLNNYNREIPIA 134

Query: 124 EALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAA 183
           +AL+ Q EVQ++L+EQLEVQ +LQMRIEAQG YLQA+L+K+Q+S S+D    G    EA+
Sbjct: 135 KALRHQIEVQKKLEEQLEVQRKLQMRIEAQGMYLQAVLEKSQRSFSMD----GPDRLEAS 190

Query: 184 RDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDN 243
           R +L  FN  +SN ME++N +D K N    ND+ +KG+ + S    QG   E +    D 
Sbjct: 191 RAKLNEFNSVLSNFMENVN-KDCKENLVGMNDLYRKGHGSSSFHIYQGGIEENK----DQ 245

Query: 244 KHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLS 281
           K KV+GG   FDLN KGSYD   ++A G  +  + MLS
Sbjct: 246 KSKVEGGMIQFDLNIKGSYDL--VSAGGAEM-ETKMLS 280

Source: Lupinus angustifolius

Species: Lupinus angustifolius

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557857|ref|XP_002519958.1| transcription factor, putative [Ricinus communis] gi|223541004|gb|EEF42562.1| transcription factor, putative [Ricinus communis]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 155/282 (54%), Positives = 193/282 (68%), Gaps = 31/282 (10%)

Query: 1   MERSAYV---SYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLM 57
           MER+A     +Y YENGV+MTRDPKPRLRWT DLH RFVDAVTKLGGPDKATPKSVLRLM
Sbjct: 1   MERAAAAFGGTYGYENGVVMTRDPKPRLRWTPDLHHRFVDAVTKLGGPDKATPKSVLRLM 60

Query: 58  GLKGLTLYHLKSHLQKYRLGQQ-TRRQHGADQHKENNGGSSFVNFYNGSLATSM--TSSR 114
           GLKGLTLYHLKSHLQKYRLGQQ  R+Q+  +Q+KEN+G +S+VNF N S ++ +  TSS 
Sbjct: 61  GLKGLTLYHLKSHLQKYRLGQQQARKQNTKEQYKENSG-ASYVNFSNHSSSSGLHATSSS 119

Query: 115 GDEDQG--PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDS 172
               QG  PI+EALK Q EV  R +EQLEVQ++LQ+RIEAQGKYLQ +L+KAQKS S   
Sbjct: 120 NHNQQGEIPIAEALKSQIEVHTRFKEQLEVQKKLQVRIEAQGKYLQDLLEKAQKSFS-SL 178

Query: 173 SVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGD 232
            + G+ N + A             L+++ N ++RK N     D+      N S F V  +
Sbjct: 179 DMKGSCNLDLA-------------LIKNTNAEERKEN---LKDIF--AEPNYSVFHVSRE 220

Query: 233 CGEREGNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGL 274
              ++ N  D +HK++G S H DLNTKGSYDF  +  + + L
Sbjct: 221 AEMQKIN--DFEHKIEG-SIHLDLNTKGSYDFAAVNGSQLEL 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453324|ref|XP_004144408.1| PREDICTED: myb family transcription factor APL-like [Cucumis sativus] gi|449500083|ref|XP_004160999.1| PREDICTED: myb family transcription factor APL-like [Cucumis sativus]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 149/274 (54%), Positives = 190/274 (69%), Gaps = 29/274 (10%)

Query: 1   MERSAYVSYPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLK 60
           MER+    YPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGP+KATPKSVLRLMGLK
Sbjct: 1   MERN----YPYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLK 56

Query: 61  GLTLYHLKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQG 120
           GLTLYHLKSHLQKYRLG QTR+Q+ A+Q  E++G  +  NF          S   ++D+G
Sbjct: 57  GLTLYHLKSHLQKYRLGLQTRKQNVAEQRNESSG--TLSNF----------SGVEEDDRG 104

Query: 121 -PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVN 179
             I+EALK   EVQ+ + EQLEVQ +LQMRIEAQGKYLQ IL+ AQKSL++  ++  N+ 
Sbjct: 105 MQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILENAQKSLAL--AINSNLG 162

Query: 180 A--EAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGERE 237
           +  ++   QL  F+ A+S+ +E   +Q+ +G+ T  ND+ KK    G S  +Q  C    
Sbjct: 163 SLDQSTEMQLINFDAALSDQIEKFKKQEIRGSITNLNDVCKK---TGDSL-IQI-CKMEA 217

Query: 238 GNEGDNKHKVDGGSTHFDLNTKGSYDFNGIAANG 271
             E  N+  ++    +FDLN+KG YD+   +ANG
Sbjct: 218 AEEDTNEFNIEKNMINFDLNSKGGYDY---SANG 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484737|ref|XP_003612656.1| Myb family transcription factor-related protein [Medicago truncatula] gi|355513991|gb|AES95614.1| Myb family transcription factor-related protein [Medicago truncatula]

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 157/274 (57%), Positives = 193/274 (70%), Gaps = 18/274 (6%)

Query: 13  NGVMMT--RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 70
           +G+MMT  RDPKPRLRWT DLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH
Sbjct: 59  DGMMMTMTRDPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSH 118

Query: 71  LQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPIS--EALKC 128
           LQKYRLGQ  R+Q+  +Q KENN   S+VNF N S  T+ T+  GD + G I   EAL+ 
Sbjct: 119 LQKYRLGQHARKQN-EEQFKENN-RCSYVNFSNHSSGTN-TNYGGDNEGGEIQIGEALRQ 175

Query: 129 QAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 188
           Q EVQ+RL+EQLEVQ +LQMRIEAQGKYLQA+L+KAQ SL  D    G  N +A++ QL 
Sbjct: 176 QIEVQKRLEEQLEVQNKLQMRIEAQGKYLQAVLEKAQTSLPQD----GPGNLDASKAQLA 231

Query: 189 TFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVD 248
            FN A++N ME+MN +D K N  + N+   K +A   +F  Q   G  E  E   K +V+
Sbjct: 232 EFNSALTNFMENMN-KDSKENILDMNEFHNKNHA--QAFNYQEVIGTEEHKEL--KPQVE 286

Query: 249 GGSTHFDLNTKGSYDFNGIAANGIGLGPSTMLSY 282
           GG+   DLN KG  + + ++A+G  +  S M+SY
Sbjct: 287 GGAVQLDLNIKGGNE-HLVSADGAEM-ESNMVSY 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225879090|dbj|BAH30615.1| hypothetical protein [Arabidopsis thaliana]

 Score =  257 bits (656), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 152/287 (52%), Positives = 188/287 (65%), Gaps = 20/287 (6%)

Query: 1   MERSAYVSYPYENG-VMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGL 59
           MER       Y+NG VMMTRDPKPRLRWTADLHDRFVDAV KLGG DKATPKSVL+LMGL
Sbjct: 1   MERVNLGGLGYDNGGVMMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGL 60

Query: 60  KGLTLYHLKSHLQKYRLGQQT-RRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDED 118
           KGLTLYHLKSHLQKYRLGQQ  ++Q+  +Q+KE N GSS+V+F N S       SR D  
Sbjct: 61  KGLTLYHLKSHLQKYRLGQQQGKKQNRTEQNKE-NAGSSYVHFDNCSQGGISNDSRFDNH 119

Query: 119 QG-----PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDSS 173
           Q      P +EA++ Q + QQR QEQLEVQ++LQMR+EAQGKYL  +L+KAQKSL     
Sbjct: 120 QRQSGNVPFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLPC--- 176

Query: 174 VTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDC 233
             GN   E  + Q + FNLA+S L+ S  + ++ G  T+ + +   G  +   FR+   C
Sbjct: 177 --GNA-GETDKGQFSDFNLALSGLVGSDRKNEKAGLVTDISHL--NGGDSSQEFRL---C 228

Query: 234 GEREGNE-GDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTM 279
           GE+E  E GD   K + G  HFDLN+K  YD       GI + P+ +
Sbjct: 229 GEQEKIETGDACVKPESGFVHFDLNSKSGYDLLNCGKYGIEVKPNVI 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791167|ref|XP_002863468.1| hypothetical protein ARALYDRAFT_356449 [Arabidopsis lyrata subsp. lyrata] gi|297309303|gb|EFH39727.1| hypothetical protein ARALYDRAFT_356449 [Arabidopsis lyrata subsp. lyrata]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 153/289 (52%), Positives = 192/289 (66%), Gaps = 24/289 (8%)

Query: 1   MERSAYVSYPYENG-VMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGL 59
           MER       Y+NG VMMTRDPKPRLRWTADLHDRFVDAV KLGG DKATPKSVL+LMGL
Sbjct: 1   MERVNLGGLGYDNGGVMMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGL 60

Query: 60  KGLTLYHLKSHLQKYRLGQQT-RRQHGADQHKENNGGSSFVNFYNGSLATSMTSSR---G 115
           KGLTLYHLKSHLQKYRLGQQ  ++Q+  +Q+KE N GSS+V+F N S       SR   G
Sbjct: 61  KGLTLYHLKSHLQKYRLGQQQGKKQNRTEQNKE-NAGSSYVHFDNCSQGGISNESRFDSG 119

Query: 116 DEDQG---PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLSVDS 172
           ++ Q    P +EA++ Q + QQR QEQLEVQ++LQMR+EAQGKYL  +L+KAQKS+    
Sbjct: 120 NQRQSGNVPFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSIPC-- 177

Query: 173 SVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSS-FRVQG 231
              GNV  E  + Q + FNLA+S L+ S ++ ++ G     + +    NA+ S  FR+  
Sbjct: 178 ---GNV-GETDKGQFSDFNLALSGLVGSDHKNEKVGLVANISHL----NADSSEDFRL-- 227

Query: 232 DCGEREGNE-GDNKHKVDGGSTHFDLNTKGSYDFNGIAANGIGLGPSTM 279
            CGE+E  E GD   K + G  HFDLN+K  YD       GI + P+ +
Sbjct: 228 -CGEQEKIETGDACVKPESGFVHFDLNSKSGYDLLNCGKYGIEVKPNVI 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.890	0.954	0.494	7.8e-55
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.636	0.604	0.463	1.5e-35
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.636	0.610	0.430	4.6e-34
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.699	0.553	0.404	1.5e-33
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.625	0.449	0.414	3.8e-30
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.618	0.435	0.424	3.8e-30
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.533	0.642	0.429	1.5e-28
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.604	0.507	0.405	5e-28
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.522	0.517	0.420	2.9e-25
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.593	0.406	0.318	4.4e-19

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 134/271 (49%), Positives = 166/271 (61%)

Query:    16 MMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
             MMTRDPKPRLRWTADLHDRFVDAV KLGG DKATPKSVL+LMGLKGLTLYHLKSHLQKYR
Sbjct:     1 MMTRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYR 60

Query:    76 LGQQT-RRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQ---G--PISEALKCQ 129
             LGQQ  ++Q+  +Q+KEN  GSS+V+F N S       SR D  Q   G  P +EA++ Q
Sbjct:    61 LGQQQGKKQNRTEQNKEN-AGSSYVHFDNCSQGGISNDSRFDNHQRQSGNVPFAEAMRHQ 119

Query:   130 AXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTT 189
                               MR+EAQGKYL  +L+KAQKSL       GN   E  + Q + 
Sbjct:   120 VDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSLPC-----GNAG-ETDKGQFSD 173

Query:   190 FNLAISNLMESMNEQDRKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNE-GDNKHKVD 248
             FNLA+S L+ S  + ++ G  T+ + +   G  +   FR+   CGE+E  E GD   K +
Sbjct:   174 FNLALSGLVGSDRKNEKAGLVTDISHL--NGGDSSQEFRL---CGEQEKIETGDACVKPE 228

Query:   249 GGSTHFDLNTKGSYDFNGIAANGIGLGPSTM 279
              G  HFDLN+K  YD       GI + P+ +
Sbjct:   229 SGFVHFDLNSKSGYDLLNCGKYGIEVKPNVI 259

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 90/194 (46%), Positives = 124/194 (63%)

Query:    10 PYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69
             P +  +++T DPKPRLRWT +LH+RFVDAVT+LGGPDKATPK+++R MG+KGLTLYHLKS
Sbjct:    29 PGDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKS 88

Query:    70 HLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYN--GSLATS-MTSSRGDEDQG-PISEA 125
             HLQK+RLG    RQ G +   EN+  +S V      GS +TS M  ++ ++++G  ++EA
Sbjct:    89 HLQKFRLG----RQAGKES-TENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEA 143

Query:   126 LKCQAXXXXXXXXXXXXXXXXX---MRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEA 182
             L+ Q                     +RIEAQGKYLQ+IL+KA K+   D         EA
Sbjct:   144 LRAQMEVQRRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKACKAF--DEQAATFAGLEA 201

Query:   183 ARDQLTTFNLAISN 196
             AR++L+   + +SN
Sbjct:   202 AREELSELAIKVSN 215

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 81/188 (43%), Positives = 121/188 (64%)

Query:    10 PYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69
             P +  +++T DPKPRLRWT++LH+RFVDAVT+LGGPDKATPK+++R MG+KGLTLYHLKS
Sbjct:    25 PIDACLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKS 84

Query:    70 HLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQ 129
             HLQK+RLG+Q+ ++   D  K+ +  +   +  + S ++   +++   +   ++EAL+ Q
Sbjct:    85 HLQKFRLGRQSCKE-SIDNSKDVSCVAESQDTGSSSTSSLRLAAQEQNESYQVTEALRAQ 143

Query:   130 AXXXXXXXXXXXXXXXXX---MRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQ 186
                                  +RIEAQGKYLQ+IL+KA K+  ++         EAAR++
Sbjct:   144 MEVQRRLHEQLEYTQVQRRLQLRIEAQGKYLQSILEKACKA--IEEQAVAFAGLEAAREE 201

Query:   187 LTTFNLAI 194
             L+   LAI
Sbjct:   202 LS--ELAI 207

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 85/210 (40%), Positives = 125/210 (59%)

Query:    12 ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
             ++G+++T DPKPRLRWT +LH+RFVDAV +LGGPDKATPK+++R+MG+KGLTLYHLKSHL
Sbjct:    24 DSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83

Query:    72 QKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAX 131
             QK+RLG+Q  +++G    KE +  S+     N + ++ M S   +E Q  +   L  Q  
Sbjct:    84 QKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLE 143

Query:   132 XXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFN 191
                             +RIEAQGKY+Q+IL++A ++L+ ++       A AA       N
Sbjct:   144 VQRHLQ----------LRIEAQGKYMQSILERACQTLAGENMAAAT--AAAAVGGGYKGN 191

Query:   192 LAISNLMESMNEQDRKGNATEFNDMIKKGN 221
             L  S+L  ++       +   F D+   GN
Sbjct:   192 LGSSSLSAAVGPPPHPLSFPPFQDLNIYGN 221

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 75/181 (41%), Positives = 106/181 (58%)

Query:    10 PYENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKS 69
             P ++G++++ D KPRL+WT DLH+RF++AV +LGG DKATPK+++++MG+ GLTLYHLKS
Sbjct:    33 PGDSGLILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKS 92

Query:    70 HLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQ--GPISEALK 127
             HLQKYRL +    Q     +K            +     S   S G +     PI EAL+
Sbjct:    93 HLQKYRLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNKNSPIGEALQ 152

Query:   128 CQAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQL 187
              Q                  +RIEAQGKYLQ++L+KAQ++L   +   G    EAA+ QL
Sbjct:   153 MQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQN--LGAAGIEAAKVQL 210

Query:   188 T 188
             +
Sbjct:   211 S 211

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 76/179 (42%), Positives = 109/179 (60%)

Query:    12 ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHL 71
             ++G++++ D KPRL+WT DLH+RFV+AV +LGG DKATPK+++++MG+ GLTLYHLKSHL
Sbjct:    35 DSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHL 94

Query:    72 QKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQG--PISEALKCQ 129
             QKYRL +    Q  +  +K +       N      + S + S G +     PIS+AL+ Q
Sbjct:    95 QKYRLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQMQ 154

Query:   130 AXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 188
                               +RIEAQGKYLQ+IL+KAQ++L   +   G    EA + QL+
Sbjct:   155 IEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQN--LGAAGIEATKAQLS 211

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 73/170 (42%), Positives = 105/170 (61%)

Query:    13 NGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQ 72
             +G+++T DPKPRLRWT +LH+RFVDAVT LGGP+KATPK+++R+MG+KGLTLYHLKSHLQ
Sbjct:    14 SGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

Query:    73 KYRLGQQTRRQHGADQH---KENNGGSSFVNFYNGSLATS-MTSSRG-DEDQGPISEALK 127
             K+RLG+Q  ++H  +     ++ N  S      N    TS +   R  +E Q  +   ++
Sbjct:    74 KFRLGKQPHKEHSQNHSICIRDTNRASMLDLRRNAVFTTSPLIIGRNMNEMQMEVQRRIE 133

Query:   128 CQAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKA----QKSLSVDSS 173
              +                   RI AQGKY++++L+KA    + SL+ D S
Sbjct:   134 EEVVIERQVN----------QRIAAQGKYMESMLEKACETQEASLTKDYS 173

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 73/180 (40%), Positives = 107/180 (59%)

Query:    15 VMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY 74
             ++++ D KPRL+WT DLH +F++AV +LGGP+KATPK ++++M + GLTLYHLKSHLQKY
Sbjct:    27 LVLSTDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKY 86

Query:    75 RLGQQTRRQHG---ADQHKENNGGSSFVNFYNGSLATSMTSSRGD--EDQG-PISEALKC 128
             RLG+  +            EN    S  N        S+T    +  +D+G  I+EAL+ 
Sbjct:    87 RLGKSMKFDDNKLEVSSASENQEVES-KNDSRDLRGCSVTEENSNPAKDRGLQITEALQM 145

Query:   129 QAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLT 188
             Q                  ++IEAQGKYLQ++L KAQ++L+  SS   N+  + AR +L+
Sbjct:   146 QMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQTLAGYSS--SNLGMDFARTELS 203

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 69/164 (42%), Positives = 95/164 (57%)

Query:    22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
             K RLRWT +LH+RFVDAV +LGGPD+ATPK VLR+MG++GLT+YH+KSHLQKYRL +   
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL- 73

Query:    82 RQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAXXXXXXXXXXX 141
                 + + K+ +   S      G + + +  S G +    I+EALK Q            
Sbjct:    74 -PDSSSEGKKTDKKES------GDMLSGLDGSSGMQ----ITEALKLQMEVQKRLHEQLE 122

Query:   142 XXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARD 185
                   +RIEAQGKYL+ I+++ Q+     S V G  +A    D
Sbjct:   123 VQRQLQLRIEAQGKYLKKIIEEQQRL----SGVLGEPSAPVTGD 162

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 4.4e-19, P = 4.4e-19
 Identities = 59/185 (31%), Positives = 94/185 (50%)

Query:    22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ--- 78
             K R+RWT +LH+ FV+AV +LGG ++ATPK+VL+L+   GLT+YH+KSHLQKYR  +   
Sbjct:   231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query:    79 QTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAXXXXXXXX 138
             +T    G  Q K+    +S  +  +  + TS+           I++AL+ Q         
Sbjct:   291 ETSEVTGEPQEKKM---TSIEDIKSLDMKTSVE----------ITQALRLQMEVQKRLHE 337

Query:   139 XXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLM 198
                      ++IE QG+YLQ + +K QK +  + S +   + +          + +  L 
Sbjct:   338 QLEIQRSLQLQIEKQGRYLQMMFEKQQK-IQDNKSSSSEASPKQCNGSFAEVEVGLETLT 396

Query:   199 ESMNE 203
                NE
Sbjct:   397 GDQNE 401

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-24
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	2e-18
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	2e-10
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-07

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 93.2 bits (232), Expect = 1e-24
 Identities = 38/57 (66%), Positives = 43/57 (75%)

Query: 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ 78
          KPR+ WT DLHDRF+ AV KLGGPD ATPK +L LM + GLT   + SHLQKYRL Q
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 76.9 bits (190), Expect = 2e-18
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query: 121 PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS 169
            I+EAL+ Q EVQ+RL EQLEVQ  LQ+RIEAQGKYLQ IL+KAQK+LS
Sbjct: 3   QITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 60.6 bits (146), Expect = 2e-10
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%)

Query: 22  KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTR 81
           K ++ WT +LH RFV AV +LG  +KA P  +L LMG++ LT +++ SHLQKYR    + 
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR----SH 289

Query: 82  RQHGADQHKE 91
           R+H A +  E
Sbjct: 290 RRHLAAREAE 299

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR 75
          R  WT +  +  ++AV K G  +      + + +   G T    K+    Y 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.92
PLN03162	526	golden-2 like transcription factor; Provisional	99.89
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.86
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.34
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	90.91
smart00426	68	TEA TEA domain.	88.91

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.92  E-value=1.3e-25  Score=162.86  Aligned_cols=49  Identities=73%  Similarity=0.965  Sum_probs=47.6

Q ss_pred             chHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhcc
Q 023389          121 PISEALKCQAEVQQRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSLS  169 (283)
Q Consensus       121 qI~EALr~QmEVQrrLhEQLEVQRhLQLRIEAQGKYLQsiLEKAqetLa  169 (283)
                      +|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         3 ~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    3 QITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999875

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.89  E-value=1.1e-23  Score=203.12  Aligned_cols=62  Identities=45%  Similarity=0.753  Sum_probs=58.3

Q ss_pred             cccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023389           17 MTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ   79 (283)
Q Consensus        17 ~~~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~   79 (283)
                      ....+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            345778999999999999999999999 79999999999999999999999999999999875

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.86  E-value=7e-22  Score=145.43  Aligned_cols=56  Identities=66%  Similarity=1.042  Sum_probs=54.2

Q ss_pred             CCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389           22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG   77 (283)
Q Consensus        22 K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~   77 (283)
                      |+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||..+|+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            69999999999999999999998899999999999999999999999999999975

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.34  E-value=0.00062  Score=47.28  Aligned_cols=48  Identities=27%  Similarity=0.387  Sum_probs=41.5

Q ss_pred             CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023389           24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR   75 (283)
Q Consensus        24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYR   75 (283)
                      |-.||++=+..|++||.++|.   -.-+.|...|+ ++-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992   26899999999 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=90.91  E-value=0.47  Score=35.10  Aligned_cols=34  Identities=38%  Similarity=0.497  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 023389          134 QRLQEQLEVQERLQMRIEAQGKYLQAILQKAQKSL  168 (283)
Q Consensus       134 rrLhEQLEVQRhLQLRIEAQGKYLQsiLEKAqetL  168 (283)
                      .-|+.|+||||+|.=.+|.| |-||.-+|...+-|
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl   39 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL   39 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence            45788999999999999988 67777776665544

>smart00426 TEA TEA domain

Probab=88.91  E-value=0.47  Score=36.96  Aligned_cols=18  Identities=22%  Similarity=0.584  Sum_probs=16.6

Q ss_pred             ccChHHHHHHHHHHHHhC
Q 023389           26 RWTADLHDRFVDAVTKLG   43 (283)
Q Consensus        26 rWT~eLH~rFV~AV~~LG   43 (283)
                      .|.++|-..|++|+...-
T Consensus         5 vWp~~lE~Af~~aL~~~~   22 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP   22 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC
Confidence            699999999999999775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	283
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		1e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77
          T   KPR+ WT +LH++F+ AV  LG  ++A PK +L LM +  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	6e-25

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 93.8 bits (233), Expect = 6e-25
 Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG 77
          T   KPR+ WT +LH++F+ AV  LG  ++A PK +L LM +  LT  ++ SHLQK+R+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 78 QQ 79
           +
Sbjct: 60 LK 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.96
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	89.01
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	86.64
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	84.9
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	84.61
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	83.13
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	83.09

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.96  E-value=1.3e-29  Score=189.87  Aligned_cols=60  Identities=45%  Similarity=0.793  Sum_probs=57.4

Q ss_pred             ccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhh
Q 023389           18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ   78 (283)
Q Consensus        18 ~~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~   78 (283)
                      ++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999 7999999999999999999999999999999974

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=89.01  E-value=1.5  Score=33.13  Aligned_cols=46  Identities=15%  Similarity=0.133  Sum_probs=38.6

Q ss_pred             CCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023389           23 PRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY   74 (283)
Q Consensus        23 ~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY   74 (283)
                      .+-.||+|=+.+|++||..+|+    .=+.|-+.|+  +=|..+++.|-++|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            4678999999999999999993    3467777764  78999999998876

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.64  E-value=1.2  Score=32.33  Aligned_cols=55  Identities=16%  Similarity=0.308  Sum_probs=41.3

Q ss_pred             CCCCCcccChHHHHHHHHHHHHhCCCCCCCh---hHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389           20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATP---KSVLRLMGLKGLTLYHLKSHLQKYRLG   77 (283)
Q Consensus        20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtP---K~Il~lM~v~gLT~~hVkSHLQKYRl~   77 (283)
                      +...+-.||+|=+.+|+++|..+| .+...|   +.|-+.|  +|=|..+|+.|-++|-..
T Consensus         4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence            344556899999999999999999 333223   3455554  689999999999998654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=84.90  E-value=2.7  Score=30.46  Aligned_cols=51  Identities=20%  Similarity=0.358  Sum_probs=41.3

Q ss_pred             CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389           21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG   77 (283)
Q Consensus        21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~   77 (283)
                      ...+-.||+|=+..|+++|..+|-    .=..|-..|  +|=|-.+|+.|-++|-..
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            345678999999999999999992    456676654  789999999999988543

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=84.61  E-value=1.5  Score=34.10  Aligned_cols=56  Identities=23%  Similarity=0.287  Sum_probs=36.0

Q ss_pred             CCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhh---h-C-------------CCCCCHHHHHHhhhhhhhh
Q 023389           20 DPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRL---M-G-------------LKGLTLYHLKSHLQKYRLG   77 (283)
Q Consensus        20 ~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~l---M-~-------------v~gLT~~hVkSHLQKYRl~   77 (283)
                      +++..-+|.++|-..|++|+...-=....+  -+|..   | |             -+-=|..+|.||||.-|..
T Consensus         2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~   74 (82)
T 2hzd_A            2 DNDAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR   74 (82)
T ss_dssp             CGGGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             CCCcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence            345566899999999999999776111222  22211   1 1             0334677899999986654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=83.13  E-value=2  Score=42.60  Aligned_cols=53  Identities=25%  Similarity=0.405  Sum_probs=44.8

Q ss_pred             CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhhh
Q 023389           21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQ   79 (283)
Q Consensus        21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~~   79 (283)
                      .+..-+||++=|..|++|+.+.|   + .=+.|-+.++-.  |..+|++|-++||....
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yG---k-dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~  429 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDVIGNK--SVVQVKNFFVNYRRRFN  429 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHT---T-CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence            35578999999999999999998   2 477888887765  89999999999987544

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=83.09  E-value=4.3  Score=28.45  Aligned_cols=50  Identities=24%  Similarity=0.212  Sum_probs=38.7

Q ss_pred             CCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 023389           21 PKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR   75 (283)
Q Consensus        21 ~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYR   75 (283)
                      +..|-.||+|=..+|++||..+| .  ..=+.|-+.|  ++=|-.+++.|-++|-
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l   54 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYF   54 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHc
Confidence            44566899999999999999999 1  1245676666  6788889988877763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	5e-23
d1vpka1	120	d.131.1.1 (A:1-120) DNA polymerase III, beta subun	0.004

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 87.7 bits (217), Expect = 5e-23
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76
          T   KPR+ WT +LH++F+ AV  LG  ++A PK +L LM +  LT  ++ SHLQK+R+
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Length = 120

class: Alpha and beta proteins (a+b)
fold: DNA clamp
superfamily: DNA clamp
family: DNA polymerase III, beta subunit
domain: DNA polymerase III, beta subunit
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 6/119 (5%)

Query: 148 MRIEAQGKYLQAILQKAQKSLSVDSS--VTGNVNAEAARDQLTTFNLAISNLMESMNEQD 205
           M++      L+  +  A K+L+  S   +      E          +  ++L   +    
Sbjct: 1   MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFY---ICATDLETGVKATV 57

Query: 206 RKGNATEFNDMIKKGNANGSSFRVQGDCGEREGNEGDNKHKVDGGSTHFDLNTKGSYDF 264
                +     +  G+      +V  D    E +   +   +  GST F + T  + +F
Sbjct: 58  NAAEISGEARFVVPGDVIQKMVKVLPD-EITELSLEGDALVISSGSTVFRITTMPADEF 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	90.54
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	86.95

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=6.5e-27  Score=173.36  Aligned_cols=60  Identities=45%  Similarity=0.784  Sum_probs=56.8

Q ss_pred             ccCCCCCcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhhh
Q 023389           18 TRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQ   78 (283)
Q Consensus        18 ~~~~K~RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~~   78 (283)
                      +.++|||++||+|||++||+||++||+ +.||||.|+++|+|++||+.||+|||||||+..
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l   60 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            357899999999999999999999985 899999999999999999999999999999974

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.28  Score=33.24  Aligned_cols=48  Identities=21%  Similarity=0.407  Sum_probs=39.8

Q ss_pred             CcccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 023389           24 RLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLG   77 (283)
Q Consensus        24 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKYRl~   77 (283)
                      ..+||+|=+..|++||...|.    .=..|-..|  |+=|..+|++|-++|-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            468999999999999999993    456777766  478999999999987544

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.95  E-value=0.76  Score=29.74  Aligned_cols=44  Identities=27%  Similarity=0.298  Sum_probs=35.5

Q ss_pred             ccChHHHHHHHHHHHHhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 023389           26 RWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKY   74 (283)
Q Consensus        26 rWT~eLH~rFV~AV~~LGG~~kAtPK~Il~lM~v~gLT~~hVkSHLQKY   74 (283)
                      .||++=+.+|++||...| .  ..=+.|-+.|+  +=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~--~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-F--GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-T--TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-C--ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            499999999999999998 2  23566777775  55889999998876