Citrus Sinensis ID: 023414

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MGLAGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLYAS
ccccccccHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHccccccEEEcccccccccccccccccEEEEccccccccHHHHHHHcccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEccccccccEEEEEEcccccccccccccccccccEEEcccccEEEEEEccccccccccccccccEEEEEEEEEccccEEcccccccccccccccccc
ccccccccHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHcccccccEEEEcccHcccccEEEccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHccccccEEEEEEEEEccccccccccccccccEcccccccEEEEEEEHHHccccccEEEEEccccccccEEEEEEccccEEEccccccccccccEEEEEccccEEEEEccEEEcccccccccccEEEEEEEEEccccEcccHccccccccccccccc
mglagnlnsdnlnffnSQGYvvlesfasDEEIEAMRKQMDHLldgfdcstssvfsttnqqkvtddYFYESAEKISFFFeekafgddgnlkqpkelsinkVGHALHELDPVFKKFSRSEKTSNLLhslgykrpvdiqsmyifkqpgiggevvphqdnsflitepstcTGLWLALEDATIINgclwaipgshknglVRRFIrgeegvyfdrpppsydqndfvpievkAGSLVLIhgdlihqsfenqssksrhaYSLHVVEtdgcrwsqenwirrkvepeplyas
mglagnlnsdnlnFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTssvfsttnqqkvtDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVetdgcrwsqenwirrkvepeplyas
MGLAGnlnsdnlnffnsQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLYAS
***********LNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDD********LSINKVGHALHELDPVFKKF******SNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSF********HAYSLHVVETDGCRWSQENWIR***********
****GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVE***LY**
MGLAGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLYAS
*****NLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLY**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLAGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLYAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
Q5SRE7291 Phytanoyl-CoA dioxygenase yes no 0.946 0.917 0.468 6e-67
Q0IIB1291 Phytanoyl-CoA dioxygenase yes no 0.968 0.938 0.465 2e-66
Q5U3U0291 Phytanoyl-CoA dioxygenase yes no 0.932 0.903 0.453 8e-66
Q9DB26291 Phytanoyl-CoA dioxygenase yes no 0.968 0.938 0.448 6e-64
Q5BJP9291 Phytanoyl-CoA dioxygenase yes no 0.964 0.934 0.449 1e-63
Q9NAM7288 Phytanoyl-CoA dioxygenase yes no 0.911 0.892 0.436 5e-60
P0C660288 Phytanoyl-CoA dioxygenase N/A no 0.932 0.913 0.427 3e-58
Q54XH6281 Phytanoyl-CoA dioxygenase yes no 0.936 0.939 0.426 4e-58
O62515312 Probable phytanoyl-CoA di no no 0.531 0.480 0.264 2e-07
O35386338 Phytanoyl-CoA dioxygenase no no 0.854 0.713 0.244 2e-05
>sp|Q5SRE7|PHYD1_HUMAN Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Homo sapiens GN=PHYHD1 PE=1 SV=2 Back     alignment and function desciption
 Score =  254 bits (648), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/282 (46%), Positives = 175/282 (62%), Gaps = 15/282 (5%)

Query: 7   LNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV 62
           L+   L  F   G++VLE F S EE  AM++++  ++   D    C T   FST  ++++
Sbjct: 4   LSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTE--FSTQEEEQL 61

Query: 63  ----TDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSE 118
               + DYF  S +KI FFFE+  F + GN   P E SINK+GHALH  DPVFK  + S 
Sbjct: 62  RAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSF 121

Query: 119 KTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDAT 177
           K   L  SLG + PV +QSMYIFKQP  GGEV PHQD SFL TEP     G+W+A+EDAT
Sbjct: 122 KVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDAT 181

Query: 178 IINGCLWAIPGSHKNGLVRRFIRG----EEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIH 233
           + NGCLW IPGSH +G+ RR +R       G  F    P+ D + FVP  V+ G+LVLIH
Sbjct: 182 LENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIH 241

Query: 234 GDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVE 275
           G+++H+S +N S +SR AY+ H++E  G  WS ENW++   E
Sbjct: 242 GEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAE 283
Isoform 1 has alpha-ketoglutarate-dependent dioxygenase activity. Does not show detectable activity towards fatty acid CoA thioesters. Is not expected to be active with phytanoyl CoA. Isoform 2 and isoform 3 probably lack enzyme activity.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q0IIB1|PHYD1_BOVIN Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Bos taurus GN=PHYHD1 PE=2 SV=1 Back     alignment and function description
>sp|Q5U3U0|PHYD1_DANRE Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Danio rerio GN=phyhd1 PE=2 SV=1 Back     alignment and function description
>sp|Q9DB26|PHYD1_MOUSE Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Mus musculus GN=Phyhd1 PE=2 SV=2 Back     alignment and function description
>sp|Q5BJP9|PHYD1_RAT Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Rattus norvegicus GN=Phyhd1 PE=2 SV=1 Back     alignment and function description
>sp|Q9NAM7|PHYD1_CAEEL Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog OS=Caenorhabditis elegans GN=Y105C5B.9 PE=3 SV=1 Back     alignment and function description
>sp|P0C660|PHYD1_CAEBR Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog OS=Caenorhabditis briggsae GN=CBG00325 PE=3 SV=1 Back     alignment and function description
>sp|Q54XH6|PHYD1_DICDI Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=phyhd1 PE=3 SV=1 Back     alignment and function description
>sp|O62515|PAHX_CAEEL Probable phytanoyl-CoA dioxygenase OS=Caenorhabditis elegans GN=ZK550.6 PE=3 SV=2 Back     alignment and function description
>sp|O35386|PAHX_MOUSE Phytanoyl-CoA dioxygenase, peroxisomal OS=Mus musculus GN=Phyh PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
224092111282 predicted protein [Populus trichocarpa] 1.0 1.0 0.822 1e-137
225424246283 PREDICTED: phytanoyl-CoA dioxygenase dom 1.0 0.996 0.805 1e-134
363807888280 uncharacterized protein LOC100788875 [Gl 0.985 0.992 0.777 1e-129
449445411274 PREDICTED: phytanoyl-CoA dioxygenase dom 0.953 0.981 0.806 1e-129
388515193280 unknown [Medicago truncatula] 0.985 0.992 0.774 1e-127
356575959280 PREDICTED: phytanoyl-CoA dioxygenase dom 0.985 0.992 0.767 1e-127
388509426280 unknown [Lotus japonicus] 0.985 0.992 0.777 1e-123
21593659283 unknown [Arabidopsis thaliana] 0.996 0.992 0.740 1e-123
18379234283 phytanoyl-CoA dioxygenase (PhyH)-like pr 0.996 0.992 0.736 1e-123
255570138356 phytanoyl-CoA dioxygenase domain contain 0.929 0.735 0.802 1e-122
>gi|224092111|ref|XP_002309477.1| predicted protein [Populus trichocarpa] gi|118486091|gb|ABK94889.1| unknown [Populus trichocarpa] gi|222855453|gb|EEE93000.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/282 (82%), Positives = 256/282 (90%)

Query: 1   MGLAGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQ 60
           MG+ G L+SD  + FNSQGY+V+ESFA+ E+IE+M K+MD LLD FD +  SVFST NQ+
Sbjct: 1   MGITGTLSSDQFDSFNSQGYLVIESFANPEDIESMMKRMDKLLDDFDYTNVSVFSTKNQR 60

Query: 61  KVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKT 120
           KVTDDYFY+SAE ISFFFEEKAFGDDG+LKQPK+LSINKVGHALHELDPVFK FS SEK 
Sbjct: 61  KVTDDYFYQSAENISFFFEEKAFGDDGSLKQPKQLSINKVGHALHELDPVFKGFSSSEKC 120

Query: 121 SNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIIN 180
           S LL SLGYK+PV IQSMYIFKQPGIGGEVVPHQDNSFL TEP+TCTG+WLALEDAT++N
Sbjct: 121 SGLLSSLGYKKPVIIQSMYIFKQPGIGGEVVPHQDNSFLYTEPTTCTGMWLALEDATLLN 180

Query: 181 GCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQS 240
           GCLWAIPGSHKNGLVRRF+RGE GVYFD+P PSYDQ DFVPIEVKAGSLVLIHGDLIHQS
Sbjct: 181 GCLWAIPGSHKNGLVRRFLRGENGVYFDQPSPSYDQKDFVPIEVKAGSLVLIHGDLIHQS 240

Query: 241 FENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLYAS 282
           FENQSSKSRHAYS HVV+TDGC+W+ ENWIRRKVEPEPLYAS
Sbjct: 241 FENQSSKSRHAYSWHVVDTDGCKWAPENWIRRKVEPEPLYAS 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424246|ref|XP_002284469.1| PREDICTED: phytanoyl-CoA dioxygenase domain-containing protein 1 [Vitis vinifera] gi|297737693|emb|CBI26894.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363807888|ref|NP_001242446.1| uncharacterized protein LOC100788875 [Glycine max] gi|255641531|gb|ACU21039.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449445411|ref|XP_004140466.1| PREDICTED: phytanoyl-CoA dioxygenase domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388515193|gb|AFK45658.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356575959|ref|XP_003556103.1| PREDICTED: phytanoyl-CoA dioxygenase domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|388509426|gb|AFK42779.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|21593659|gb|AAM65626.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18379234|ref|NP_565262.1| phytanoyl-CoA dioxygenase (PhyH)-like protein [Arabidopsis thaliana] gi|16323212|gb|AAL15340.1| At2g01490/F2I9.11 [Arabidopsis thaliana] gi|20197400|gb|AAC67325.2| expressed protein [Arabidopsis thaliana] gi|21436043|gb|AAM51599.1| At2g01490/F2I9.11 [Arabidopsis thaliana] gi|330250366|gb|AEC05460.1| phytanoyl-CoA dioxygenase (PhyH)-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255570138|ref|XP_002526031.1| phytanoyl-CoA dioxygenase domain containing, putative [Ricinus communis] gi|223534678|gb|EEF36371.1| phytanoyl-CoA dioxygenase domain containing, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
TAIR|locus:2049536283 PAHX "AT2G01490" [Arabidopsis 0.992 0.989 0.717 1.9e-113
ZFIN|ZDB-GENE-041114-159291 phyhd1 "phytanoyl-CoA dioxygen 0.925 0.896 0.464 3e-62
UNIPROTKB|Q5SRE7291 PHYHD1 "Phytanoyl-CoA dioxygen 0.921 0.893 0.480 6.2e-62
UNIPROTKB|Q0IIB1291 PHYHD1 "Phytanoyl-CoA dioxygen 0.921 0.893 0.483 1e-61
MGI|MGI:3612860291 Phyhd1 "phytanoyl-CoA dioxygen 0.925 0.896 0.460 2.7e-59
RGD|1310377291 Phyhd1 "phytanoyl-CoA dioxygen 0.921 0.893 0.462 3.5e-59
DICTYBASE|DDB_G0278961281 DDB_G0278961 "phytanoyl-CoA di 0.890 0.893 0.444 5.3e-56
ASPGD|ASPL0000073479313 AN4647 [Emericella nidulans (t 0.645 0.581 0.439 4.7e-48
CGD|CAL0004540301 orf19.7316 [Candida albicans ( 0.893 0.837 0.380 3.9e-44
UNIPROTKB|Q5A3Z4301 CaO19.7316 "Putative uncharact 0.893 0.837 0.380 3.9e-44
TAIR|locus:2049536 PAHX "AT2G01490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 201/280 (71%), Positives = 239/280 (85%)

Query:     1 MGLAGXXXXXXXXXXXXQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQ 60
             MG+ G            QGY+V+ESFAS++EI  +RK+MD LL+ FDCS SS+FST NQ+
Sbjct:     1 MGITGSLTPDQLDFFHSQGYLVIESFASEDEIRGLRKRMDELLNQFDCSVSSIFSTKNQK 60

Query:    61 KVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKT 120
               TD+YF+ESAEKISFFFEEKAFGDDG LKQPK+LSINKVGHALHELDP++K F+ S K 
Sbjct:    61 HTTDNYFFESAEKISFFFEEKAFGDDGKLKQPKQLSINKVGHALHELDPLYKDFTYSSKF 120

Query:   121 SNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEPSTCTGLWLALEDATIIN 180
             S+L  SLGY+RPV +QSMYIFKQPGIGGEVVPHQDNSF+ T+P +CTGLW+ALED+T++N
Sbjct:   121 SSLASSLGYRRPVVMQSMYIFKQPGIGGEVVPHQDNSFVYTDPQSCTGLWIALEDSTLVN 180

Query:   181 GCLWAIPGSHKNGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQS 240
             GCLWAIPGSHKNGLVRRFIRG+ G+ FD+P PSY+Q DFV IE+KAGSL+ IHGDLIHQS
Sbjct:   181 GCLWAIPGSHKNGLVRRFIRGDNGITFDQPSPSYEQKDFVSIEMKAGSLIAIHGDLIHQS 240

Query:   241 FENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVEPEPLY 280
             FEN SSKSRHAYSLHVVE+DGC+W+++NWI+R   PEPLY
Sbjct:   241 FENLSSKSRHAYSLHVVESDGCKWAKDNWIQRAKMPEPLY 280
GO:0048244 "phytanoyl-CoA dioxygenase activity" evidence=ISS;IMP
GO:0005886 "plasma membrane" evidence=IDA
ZFIN|ZDB-GENE-041114-159 phyhd1 "phytanoyl-CoA dioxygenase domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SRE7 PHYHD1 "Phytanoyl-CoA dioxygenase domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IIB1 PHYHD1 "Phytanoyl-CoA dioxygenase domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:3612860 Phyhd1 "phytanoyl-CoA dioxygenase domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310377 Phyhd1 "phytanoyl-CoA dioxygenase domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278961 DDB_G0278961 "phytanoyl-CoA dioxygenase domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000073479 AN4647 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0004540 orf19.7316 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A3Z4 CaO19.7316 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5U3U0PHYD1_DANRE1, ., -, ., -, ., -0.45320.93260.9037yesno
Q5BJP9PHYD1_RAT1, ., -, ., -, ., -0.44980.96450.9347yesno
Q9NAM7PHYD1_CAEEL1, ., -, ., -, ., -0.43650.91130.8923yesno
Q54XH6PHYD1_DICDI1, ., -, ., -, ., -0.42640.93610.9395yesno
Q9DB26PHYD1_MOUSE1, ., -, ., -, ., -0.44820.96800.9381yesno
Q5SRE7PHYD1_HUMAN1, ., -, ., -, ., -0.46800.94680.9175yesno
Q0IIB1PHYD1_BOVIN1, ., -, ., -, ., -0.46550.96800.9381yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
pfam05721213 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH) 3e-54
COG5285299 COG5285, COG5285, Protein involved in biosynthesis 8e-18
TIGR01762288 TIGR01762, chlorin-enz, chlorinating enzyme 3e-06
TIGR02408277 TIGR02408, ectoine_ThpD, ectoine hydroxylase 0.001
>gnl|CDD|218716 pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH) Back     alignment and domain information 
 Score =  174 bits (443), Expect = 3e-54
 Identities = 91/244 (37%), Positives = 116/244 (47%), Gaps = 38/244 (15%)

Query: 15  FNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKI 74
           F   GY+V+E F S EE+ A+R + + LLD                        ES +  
Sbjct: 1   FREDGYLVIEGFLSPEEVAALRAEAERLLD---------------------RAAESGDDK 39

Query: 75  SFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPV- 133
             FF+EKA GD+       E SINK  H LH         +   +   +L S  Y     
Sbjct: 40  DDFFDEKAAGDE---TGLLEKSINKRDHFLHP-----FYLADLAR--AILGSPVYVALGL 89

Query: 134 --DIQSMYIFKQPGIGGEVVP-HQDNSFL-ITEPSTCTGLWLALEDATIINGCLWAIPGS 189
               Q + IFKQPG GGEV P HQD +FL          +W+AL+DAT  NGCL  IPGS
Sbjct: 90  QSMYQDLSIFKQPGTGGEVSPWHQDYTFLPTRPAELVVNVWIALDDATEENGCLRFIPGS 149

Query: 190 HK--NGLVRRFIRGEEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSK 247
           HK   G + R +  + G   D   P YD+   VP+ +KAG  VL H  L+H S  N+S K
Sbjct: 150 HKWEVGDLTRRLPYDPGHLNDDEAPKYDEEPAVPVPMKAGDAVLFHPRLLHGSGANRSDK 209

Query: 248 SRHA 251
           SR A
Sbjct: 210 SRRA 213

This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterized by the accumulation of phytanic acid in plasma and tissues. Length = 213
>gnl|CDD|227609 COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|130823 TIGR01762, chlorin-enz, chlorinating enzyme Back     alignment and domain information
>gnl|CDD|131461 TIGR02408, ectoine_ThpD, ectoine hydroxylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
KOG3290286 consensus Peroxisomal phytanoyl-CoA hydroxylase [L 100.0
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 100.0
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 100.0
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 99.97
COG5285299 Protein involved in biosynthesis of mitomycin anti 99.93
PF07350416 DUF1479: Protein of unknown function (DUF1479); In 99.01
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 98.55
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 98.47
PLN00052310 prolyl 4-hydroxylase; Provisional 98.05
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.74
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.4
TIGR02466201 conserved hypothetical protein. This family consis 97.26
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 96.98
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 95.68
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 95.49
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 93.5
PHA02813 354 hypothetical protein; Provisional 93.45
PHA02869 418 C4L/C10L-like gene family protein; Provisional 92.64
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 91.65
COG4340226 Uncharacterized protein conserved in bacteria [Fun 91.51
TIGR02409366 carnitine_bodg gamma-butyrobetaine hydroxylase. Me 84.11
KOG3844 476 consensus Predicted component of NuA3 histone acet 83.97
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 83.77
KOG3290286 consensus Peroxisomal phytanoyl-CoA hydroxylase [L 82.13
>KOG3290 consensus Peroxisomal phytanoyl-CoA hydroxylase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-41  Score=280.25  Aligned_cols=277  Identities=42%  Similarity=0.657  Sum_probs=234.6

Q ss_pred             CCCCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHcccCCCCceeeecCcccccccccccccccccceeeccccc
Q 023414            4 AGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAF   83 (282)
Q Consensus         4 ~~~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~e~~~~   83 (282)
                      |+.|++.++..|+++||+++++|++.++++.|..++.+++++.+-..+..|.+.++.+..++||++|.+++++|||+.++
T Consensus         1 m~~l~~~~~~~f~~~Gflv~e~f~~~~e~~~L~~~~~~~~~~~~~~l~~~fst~~e~q~~~nyF~~s~dKi~~ffe~~~v   80 (286)
T KOG3290|consen    1 MGCLSPSQLVKFQTDGFLVIEGFLSAEEIDVLSQEQREFYNENDFLLHKIFSTQDEAQGFENYFLESCDKIRFFFEKGAV   80 (286)
T ss_pred             CCCCChhHHhhcccCceEEEeccccHHHHHHHHHHHHHHHHhCCceeeeccccHHHHhhHHHHHHHhcceeeeccccccc
Confidence            46789999999999999999999999999999999999999876554578999888889999999999999999999999


Q ss_pred             CCCCCcccccccccccccccccccCHHHHhhhcChhHHHHHHHhCCCCccccccceeeeCCCCCCCCcccCCCCCCcCCC
Q 023414           84 GDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP  163 (282)
Q Consensus        84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i~~~~~~llg~~~~~~~s~~~~~~p~~~~~~~wH~D~~~~~~~p  163 (282)
                      ..||.+..+..+++|+++|.+|..+|.+..+-...++..++..++-..+.+.++++++|+|+.|+.+..|||..|.+.+|
T Consensus        81 ~kdg~l~kp~~k~~nK~gh~lhd~~p~~~~fty~~k~~~l~~~l~~~~Pvv~qsmyi~K~P~iGg~vt~HqD~~~~p~~P  160 (286)
T KOG3290|consen   81 MKDGSLAKPKEKSINKIGHKLHDLDPDFKLFTYSSKVQVLAVVLGLQGPVVAQSMYIFKPPDIGGEVTPHQDLTFFPWDP  160 (286)
T ss_pred             ccccccccCccccHHHhhhhhhhcCcchhheeeeccccceeeeeccCCceeeeEEEEecCCCCCCccCCcccceecccCc
Confidence            99999999999999999999999999998887777777777666322346677887779999999999999999998888


Q ss_pred             C-cceEEeeeeeecCCcCceEEEEcCCCCCCccee-eeeCCCCee--ecCCCCCCCCCCeEEeeecCceEEEEeCccccC
Q 023414          164 S-TCTGLWLALEDATIINGCLWAIPGSHKNGLVRR-FIRGEEGVY--FDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQ  239 (282)
Q Consensus       164 ~-~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~Gdvvlf~~~~~H~  239 (282)
                      . .++..|+++.+++..||||.++||||+..+..+ +...+++.+  +....+-+......+++|++||.++|++.++|+
T Consensus       161 ~d~~~~~W~Ame~~t~~NGCL~~iPGshk~~l~~~~yp~~sgg~~~~~~~~~~~~~q~~~~~v~mekg~tv~~h~~lvh~  240 (286)
T KOG3290|consen  161 CDSCVGAWTAMEDITLVNGCLQVIPGSHKGPLLFHRYPDWSGGVNMAYIGIQDYYPQSPRGHVEMEKGDTVFFHPLLVHG  240 (286)
T ss_pred             hhhhhhhhhhhhhhhhcCCceEeccccccCcceeeccCCcccccccceeecccCCccCCccceeecCCcEEEEeeeeeec
Confidence            7 788999999999999999999999999976533 233455543  333222334456778899999999999999999


Q ss_pred             CCCCCCCCCceEEEEEEEeCCCcccCCCC-ccccCC--CCCCCC
Q 023414          240 SFENQSSKSRHAYSLHVVETDGCRWSQEN-WIRRKV--EPEPLY  280 (282)
Q Consensus       240 s~~n~s~~~R~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~  280 (282)
                      |++|+|+..|.|+..+|...+.++|..-+ |.|.+-  +++.||
T Consensus       241 S~~NrSe~~R~a~s~h~~~~~~~ky~~~~g~~Qe~~~k~~~~la  284 (286)
T KOG3290|consen  241 SGANRSEGFRKAISCHVAETDNTKYSEVNGTLQETGSKEFPDLA  284 (286)
T ss_pred             CCCCcccccccccccceeecCCceeecCCccccCcccccchhcc
Confidence            99999999999999999998668999877 877653  344444

>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>KOG3290 consensus Peroxisomal phytanoyl-CoA hydroxylase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
2opw_A291 Crystal Structure Of Human Phytanoyl-Coa Dioxygenas 1e-66
2a1x_A308 Human Phytanoyl-Coa 2-Hydroxylase In Complex With I 4e-06
>pdb|2OPW|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase Phyhd1 (Apo) Length = 291 Back     alignment and structure 
Iteration: 1

 Score =  249 bits (636), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/270 (47%), Positives = 171/270 (63%), Gaps = 15/270 (5%)
Query: 19  GYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV----TDDYFYES 70
           G++VLE F S EE  AM++++  ++   D    C T   FST  ++++    + DYF  S
Sbjct: 16  GFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTE--FSTQEEEQLRAQGSTDYFLSS 73
Query: 71  AEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYK 130
            +KI FFFE+  F + GN   P E SINK+GHALH  DPVFK  + S K   L  SLG +
Sbjct: 74  GDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQ 133
Query: 131 RPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDATIINGCLWAIPGS 189
            PV +QSMYIFKQP  GGEV PHQD SFL TEP     G+W+A+EDAT+ NGCLW IPGS
Sbjct: 134 MPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGS 193
Query: 190 HKNGLVRRFIRG----EEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQS 245
           H +G+ RR +R       G  F    P+ D + FVP  V+ G+LVLIHG+++H+S +N S
Sbjct: 194 HTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLS 253
Query: 246 SKSRHAYSLHVVETDGCRWSQENWIRRKVE 275
            +SR AY+ H++E  G  WS ENW++   E
Sbjct: 254 DRSRQAYTFHLMEASGTTWSPENWLQPTAE 283
>pdb|2A1X|A Chain A, Human Phytanoyl-Coa 2-Hydroxylase In Complex With Iron And 2- Oxoglutarate Length = 308 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 3e-95
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 2e-58
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 1e-35
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 6e-32
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 8e-30
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 9e-25
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Length = 291 Back     alignment and structure
 Score =  281 bits (720), Expect = 3e-95
 Identities = 134/289 (46%), Positives = 177/289 (61%), Gaps = 13/289 (4%)

Query: 5   GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTS--SVFSTTNQQ-- 60
             L+   L  F   G++VLE F S EE  AM++++  ++   D      + FST  ++  
Sbjct: 2   ACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQL 61

Query: 61  --KVTDDYFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSE 118
             + + DYF  S +KI FFFE+  F + GN   P E SINK+GHALH  DPVFK  + S 
Sbjct: 62  RAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSF 121

Query: 119 KTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDAT 177
           K   L  SLG + PV +QSMYIFKQP  GGEV PHQD SFL TEP     G+W+A+EDAT
Sbjct: 122 KVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDAT 181

Query: 178 IINGCLWAIPGSHKNGLVRRFIRGEEG----VYFDRPPPSYDQNDFVPIEVKAGSLVLIH 233
           + NGCLW IPGSH +G+ RR +R   G      F    P+ D + FVP  V+ G+LVLIH
Sbjct: 182 LENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIH 241

Query: 234 GDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVE-PEP-LY 280
           G+++H+S +N S +SR AY+ H++E  G  WS ENW++   E P P LY
Sbjct: 242 GEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQLY 290
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Length = 308 Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Length = 310 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Length = 313 Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Length = 319 Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Length = 344 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 100.0
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 100.0
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 100.0
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 100.0
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 100.0
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 100.0
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 99.96
2dbn_A461 Hypothetical protein YBIU; alpha/beta structure, s 99.6
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 98.79
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 98.38
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 98.19
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 98.17
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 97.74
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 97.25
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 91.91
1e5r_A290 Proline oxidase; oxidoreductase, oxygenase, 2-oxog 87.81
3pl0_A254 Uncharacterized protein; quorum sensing, biofilm f 83.79
3qh6_A157 CT296; iron, modeling; HET: PG4; 1.80A {Chlamydia 82.41
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 81.34
1ds1_A324 Clavaminate synthase 1; oxygenase, trifunctional e 81.3
1otj_A283 Alpha-ketoglutarate-dependent taurine dioxygenase; 80.26
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-51  Score=362.50  Aligned_cols=278  Identities=47%  Similarity=0.824  Sum_probs=230.1

Q ss_pred             CCCCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHcccCCC--CceeeecCcc--cc--ccccccccccccccee
Q 023414            4 AGNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCS--TSSVFSTTNQ--QK--VTDDYFYESAEKISFF   77 (282)
Q Consensus         4 ~~~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~~~~--~~~~~~~~~~--~~--~~~~~f~~~~~~i~~~   77 (282)
                      |..||++++++|+++||+||+++|++++|++++++++++++.....  ....|.+...  .+  ..++||+.+++.++++
T Consensus         1 m~~Lt~e~~~~f~~dGyvvl~~~l~~e~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~y~l~~~~~~~~~   80 (291)
T 2opw_A            1 MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFF   80 (291)
T ss_dssp             -CCCCHHHHHHHHHHSEEEETTSSCHHHHHHHHHHHHHHHHTCCCCGGGSSCCCSHHHHHHHHHHHHHHHHTTTTSEEEE
T ss_pred             CCcCCHHHHHHHHhCCEEEecCCCCHHHHHHHHHHHHHHHhhcccccCCcceecccccchhhccccccccccCCCceeee
Confidence            4689999999999999999999999999999999999998774211  1123432110  00  2356888888999999


Q ss_pred             ecccccCCCCCcccccccccccccccccccCHHHHhhhcChhHHHHHHHhCCCCccccccceeeeCCCCCCCCcccCCCC
Q 023414           78 FEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNS  157 (282)
Q Consensus        78 ~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i~~~~~~llg~~~~~~~s~~~~~~p~~~~~~~wH~D~~  157 (282)
                      ||+++++.+|.+..++...+|+++|.++..++.|.+++.+|+|++++++|+|++++++++++++|+|+.+..++||||..
T Consensus        81 ~e~~~~~~~g~~~~~~~~~in~i~~~~~~~~~~f~~l~~~p~l~~~~~~l~g~~~~~~~~~~~~k~Pg~~~~~~wHqD~~  160 (291)
T 2opw_A           81 FEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDAS  160 (291)
T ss_dssp             ECTTSBCTTSCBSSCGGGSEEEEEECHHHHCHHHHHHHTCHHHHHHHHHHTCSSEEEEEEEEECCCTTTBCCEEEECGGG
T ss_pred             cccccccccCcccCchhhhhhhhhhHhhhhCHHHHHHhcCHHHHHHHHHhcCCCccchheeEEecCCCCCCCcCCeeCCc
Confidence            99999999998777766778999888888899999999999999999999999999999999999999877789999999


Q ss_pred             CCcCCCC-cceEEeeeeeecCCcCceEEEEcCCCCCCcceeeeeCC-C--Ce-eecCCCCCCCCCCeEEeeecCceEEEE
Q 023414          158 FLITEPS-TCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIRGE-E--GV-YFDRPPPSYDQNDFVPIEVKAGSLVLI  232 (282)
Q Consensus       158 ~~~~~p~-~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~~v~~~~~~Gdvvlf  232 (282)
                      ||..+|. ..+++||+|+|++++||||+|+||||+++...++.+.. +  +. .+..++..+...+++.++++|||+|||
T Consensus       161 ~~~~~p~~~~~~~wi~L~d~~~~nG~l~~vPGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~aGd~~~f  240 (291)
T 2opw_A          161 FLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLI  240 (291)
T ss_dssp             TSCEESSSCEEEEEEESSCBCTTTTCEEEETTCSSSCCSEEEEECC----CCEEEEECCCCCCGGGCEEECBCTTCEEEE
T ss_pred             ccccCCCCceEEEEEEcccCCCCCCCEEEECCccCCCcccccccCCCCCCCcceeeccccCCCcCCeeecccCCCcEEEE
Confidence            9977776 89999999999999999999999999997665544332 1  11 132222334445689999999999999


Q ss_pred             eCccccCCCCCCCCCCceEEEEEEEeCCCcccCCCCccccCCC--CCCCCC
Q 023414          233 HGDLIHQSFENQSSKSRHAYSLHVVETDGCRWSQENWIRRKVE--PEPLYA  281 (282)
Q Consensus       233 ~~~~~H~s~~n~s~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  281 (282)
                      |++++|+|++|.|+.+|++++++|++++++.|.+++|++++++  |+.||+
T Consensus       241 ~~~~~H~s~~N~s~~~R~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  291 (291)
T 2opw_A          241 HGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQLYT  291 (291)
T ss_dssp             ETTCEEEECCBCSSSCCCEEEEEEEECTTCEECTTSSCCCCSSCCCCBSCC
T ss_pred             cCCceecCCCCCCCCceEEEEEEEEcCCCCccCccccccCCCCCCcccccC
Confidence            9999999999999999999999999986789999999999865  777774
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A* Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A Back     alignment and structure
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum} Back     alignment and structure
>3qh6_A CT296; iron, modeling; HET: PG4; 1.80A {Chlamydia trachomatis} PDB: 3qh7_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme, oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces clavuligerus} SCOP: b.82.2.2 PDB: 1drt_A* 1ds0_A 1dry_A* 1gvg_A* Back     alignment and structure
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d2fcta1308 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzym 4e-18
d2a1xa1296 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, Phy 1e-15
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Length = 308 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Syringomycin biosynthesis enzyme 2, SyrB2
species: Pseudomonas syringae pv. syringae [TaxId: 321]

 Score = 80.2 bits (196), Expect = 4e-18
 Identities = 44/290 (15%), Positives = 84/290 (28%), Gaps = 71/290 (24%)

Query: 6   NLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDD 65
            L ++    F   G++      S EE++   K+                           
Sbjct: 4   ALTAEQRASFEKNGFIGPFDAYSPEEMKETWKRTRL------------------------ 39

Query: 66  YFYESAEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLH 125
                 ++ +  +++      G          N   +  H  D          +  + + 
Sbjct: 40  ---RLLDRSAAAYQDLDAISGGT---------NIANYDRHLDDDFLASHICRPEICDRVE 87

Query: 126 SLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSF-----------LITEPSTCTGLWLALE 174
           S+     +  ++ +  K PG  G      D                 E      +W A  
Sbjct: 88  SILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFGGTITVWTAFT 147

Query: 175 DATIINGCLWAIPGSHKNGLV----------------------RRFIRGEEGVYFDRPPP 212
           DA I NGCL  IPG+  +                         R F   +          
Sbjct: 148 DANIANGCLQFIPGTQNSMNYDETKRMTYEPDANNSVVKDGVRRGFFGYDYRQLQIDENW 207

Query: 213 SYDQNDFVPIEVKAGSLVLIHGDLIHQSFEN--QSSKSRHAYSLHVVETD 260
             D+   VP+++KAG  ++    L+H S+ +  +S + R  ++   V + 
Sbjct: 208 KPDEASAVPMQMKAGQFIIFWSTLMHASYPHSGESQEMRMGFASRYVPSF 257
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Length = 296 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 100.0
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 100.0
d2csga1417 Hypothetical protein YbiU {Salmonella typhimurium 99.65
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 96.13
d1e5ra_290 Type II Proline 3-hydroxylase (proline oxidase) {S 86.82
d1otja_281 Taurine/alpha-ketoglutarate dioxygenase TauD {Esch 85.6
d2bnma2122 Hydroxypropylphosphonic acid epoxidase Fom4, C-ter 82.09
d1oiha_288 Putative alkylsulfatase AtsK {Pseudomonas putida [ 80.43
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Syringomycin biosynthesis enzyme 2, SyrB2
species: Pseudomonas syringae pv. syringae [TaxId: 321]

Probab=100.00  E-value=1.7e-37  Score=273.53  Aligned_cols=219  Identities=21%  Similarity=0.261  Sum_probs=162.0

Q ss_pred             CCCCHHHHHHhhhCcEEEEcCCCCHHHHHHHHHHHHHHHcccCCCCceeeecCcccccccccccccccccceeecccccC
Q 023414            5 GNLNSDNLNFFNSQGYVVLESFASDEEIEAMRKQMDHLLDGFDCSTSSVFSTTNQQKVTDDYFYESAEKISFFFEEKAFG   84 (282)
Q Consensus         5 ~~lt~~~~~~f~~~Gyvvi~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~e~~~~~   84 (282)
                      -.||+||+++|+++||++|+++|+++++++++++++..........   +...+              ..          
T Consensus         3 ~~Lt~eq~~~f~~~Gyl~i~~~~s~~ei~~i~~~~~~~~~~~~~~~---~~~~~--------------~~----------   55 (308)
T d2fcta1           3 FALTAEQRASFEKNGFIGPFDAYSPEEMKETWKRTRLRLLDRSAAA---YQDLD--------------AI----------   55 (308)
T ss_dssp             TCCCHHHHHHHHHHSEEEEEESSCHHHHHHHHHHHHHHHTCCTTCS---CCCCC--------------C-----------
T ss_pred             CCCCHHHHHHHHhCCEEECcCccCHHHHHHHHHHHHHHHhhccccc---ccccc--------------cc----------
Confidence            4699999999999999999999999999999999876554322110   00000              00          


Q ss_pred             CCCCcccccccccccccccccccCHHHHhhhcChhHHHHHHHhCCCCccccccceeeeCCCCCCCCcccCCCCCCcCC--
Q 023414           85 DDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYKRPVDIQSMYIFKQPGIGGEVVPHQDNSFLITE--  162 (282)
Q Consensus        85 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~i~~~~~~llg~~~~~~~s~~~~~~p~~~~~~~wH~D~~~~~~~--  162 (282)
                       .+.      ..+.  .+..+..++.|.+++.+|+|++++++|+|+++.++++.++.|+|+. ..++||||..||...  
T Consensus        56 -~~~------~~~~--~~~~~~~~~~~~~l~~~p~il~~v~~llG~~~~~~~~~~~~k~p~~-~~~~wHqD~~y~~~~~~  125 (308)
T d2fcta1          56 -SGG------TNIA--NYDRHLDDDFLASHICRPEICDRVESILGPNVLCWRTEFFPKYPGD-EGTDWHQADTFANASGK  125 (308)
T ss_dssp             ----------CGGG--GBCGGGTCHHHHHHTTCHHHHHHHHHHHCSCEEEEEEEEEEECTTC-CEECCBCCSSSCTTTSS
T ss_pred             -cCc------ccee--eehhhhcCHHHHHhhcCchhhhHHHHhhcccceeeecccccccccc-cccccccccccccCCCC
Confidence             000      0000  0123456899999999999999999999999999999999999986 457999999987543  


Q ss_pred             ----------CCcceEEeeeeeecCCcCceEEEEcCCCCCCcceeeee----C-CCCe-------e------e----cCC
Q 023414          163 ----------PSTCTGLWLALEDATIINGCLWAIPGSHKNGLVRRFIR----G-EEGV-------Y------F----DRP  210 (282)
Q Consensus       163 ----------p~~~v~~~i~L~d~~~~~G~l~~ipGSH~~~~~~~~~~----~-~~~~-------~------~----~~~  210 (282)
                                +...|++||||+|++++||||+||||||+++...+...    . ....       .      .    ...
T Consensus       126 ~~~~~~~~~~~~~~vtvwiaL~D~~~enG~l~viPGSHk~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~  205 (308)
T d2fcta1         126 PQIIWPENEEFGGTITVWTAFTDANIANGCLQFIPGTQNSMNYDETKRMTYEPDANNSVVKDGVRRGFFGYDYRQLQIDE  205 (308)
T ss_dssp             CSEECCTTSCCCSCEEEEEESSCBCTTBTCEEEETTCTTSCCBCTTSCCCCCTTTCSSCEETTEEEEBTTBCGGGGBSST
T ss_pred             cccccCCCCCCCceEEEEEecccccccceeEEEeeCCccCCccccccccccCcccccccccccccccccccccccccccc
Confidence                      23579999999999999999999999999876532110    0 0000       0      0    001


Q ss_pred             CCCCCCCCeEEeeecCceEEEEeCccccCCCCCC--CCCCceEEEEEEEeCC
Q 023414          211 PPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQ--SSKSRHAYSLHVVETD  260 (282)
Q Consensus       211 ~~~~~~~~~v~~~~~~Gdvvlf~~~~~H~s~~n~--s~~~R~~~~~~~~~~~  260 (282)
                      ....++...+.++|+|||++|||++++|||++|.  |+.+|++++++|++++
T Consensus       206 ~~~~~~~~~v~~~lkaGdvlif~~~l~HgS~pN~~~S~~~R~~~~~rY~p~~  257 (308)
T d2fcta1         206 NWKPDEASAVPMQMKAGQFIIFWSTLMHASYPHSGESQEMRMGFASRYVPSF  257 (308)
T ss_dssp             TCCCCGGGCEEECBCTTEEEEEETTSEEEECCBCSSSSSCEEEEEEEEEETT
T ss_pred             cccccccceEEEeeCCCeEEEECCCccccCCCCCCCCCCceEEEEEEEecCc
Confidence            1122334678999999999999999999999997  5688999999999974
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase TauD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Back     information, alignment and structure
>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure