Citrus Sinensis ID: 023458

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--

MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKLQPDQMGVVNQRDADLLFMWHMQRDQKRNQKCLSRLQRQ

cccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEEEcccccccEEEccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEEccccccccccccccccccccccccEEEccccEEEEEcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHc

cccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHccccccccccccEEEEcccccEEEEEEEccccccEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEEcccccHHccccccccEEEEEEcccccccccEEEccccccccccccccEccccEEHHHHHccccccccHHHHHHHHHHHHHHHccccccccccEEEEEccccccHcHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHcc

myddiamhelnprpgviinhpqgenlydgvpkdytgehvtAQNLYAVLLGDrkavkggsgkvvnskandRIFIFysdhggpgvlgmpnmpyVYAMEFIDVLKKKHAAKSYKGMVIYVEACesgsifegvmpkdldIYVTTasnaqessfgtycpgmdpspppeyitclgdlysvawmedsethnlkrETISQQYQAVKERtsnfnnynsgshvmeygntsvkseklylyqgfdpastnfppnklqpdqmgvvnqRDADLLFMWHMQRDQKRNQKCLSRLQRQ

MYDDIAMhelnprpgviinhpQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKavkggsgkvvnskanDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERtsnfnnynsgSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKLQPDQMGVVNQRDADLLFMWHMqrdqkrnqkclsrlqrq

**************GVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTA**********************YITCLGDLYSVAWME***********************************MEYGNTSVKSEKLYLYQGFD*****************VVNQRDADLLFMWHM*****************

MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRK********VVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGF***********************DADLLFM********************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		282	2.2.26 [Sep-21-2011]
P49042		497	Vacuolar-processing enzym	N/A	no	0.996	0.565	0.756	1e-128
P49045		495	Vacuolar-processing enzym	yes	no	0.968	0.551	0.752	1e-126
Q39044		486	Vacuolar-processing enzym	yes	no	0.971	0.563	0.752	1e-125
P49046		475	Legumain OS=Canavalia ens	N/A	no	0.971	0.576	0.746	1e-122
O24326		493	Vacuolar-processing enzym	N/A	no	0.971	0.555	0.746	1e-119
P49047		478	Vacuolar-processing enzym	no	no	0.929	0.548	0.629	1e-95
O24325		484	Vacuolar-processing enzym	N/A	no	0.939	0.547	0.629	1e-94
P49043		494	Vacuolar-processing enzym	no	no	0.989	0.564	0.603	3e-92
Q39119		494	Vacuolar-processing enzym	no	no	0.992	0.566	0.610	3e-89
P49044		493	Vacuolar-processing enzym	N/A	no	0.936	0.535	0.600	3e-86

>sp\|P49042\|VPE_RICCO Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1	Back alignment and function desciption

 Score =  459 bits (1180), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/283 (75%), Positives = 251/283 (88%), Gaps = 2/283 (0%)

Query: 1   MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSG 60
           MYDDIA +ELNPRPGVIINHPQGE++Y GVPKDYTGEHVTA+NLYAVLLGD+ AV+GGSG
Sbjct: 103 MYDDIAKNELNPRPGVIINHPQGEDVYAGVPKDYTGEHVTAKNLYAVLLGDKSAVQGGSG 162

Query: 61  KVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEAC 120
           KVV+SK NDRIF++YSDHGGPGVLGMPN+PY+YAM+FI+VLKKKHAA  YK MVIYVEAC
Sbjct: 163 KVVDSKPNDRIFLYYSDHGGPGVLGMPNLPYLYAMDFIEVLKKKHAAGGYKKMVIYVEAC 222

Query: 121 ESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDS 180
           ESGSIFEG+MPKD+DIYVTTASNAQESS+GTYCPGM+PSPPPE+ TCLGDLYSVAWMEDS
Sbjct: 223 ESGSIFEGIMPKDVDIYVTTASNAQESSWGTYCPGMEPSPPPEFTTCLGDLYSVAWMEDS 282

Query: 181 ETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFP 240
           E+HNLK+ET+ QQY +VK RTSN+N Y +GSHVM+YGN S+K++KLYL+QGFDPAS NFP
Sbjct: 283 ESHNLKKETVKQQYSSVKARTSNYNTYAAGSHVMQYGNQSIKADKLYLFQGFDPASVNFP 342

Query: 241 PNKLQPDQ-MGVVNQRDADLLFMWHM-QRDQKRNQKCLSRLQR 281
           PN    +  M VVNQRDA+L FMW + +R +  ++K    LQ+
Sbjct: 343 PNNAHLNAPMEVVNQRDAELHFMWQLYKRSENGSEKKKEILQQ 385

Asparagine-specific endopeptidase involved in the processing of vacuolar seed protein precursors into the mature forms.
Ricinus communis (taxid: 3988)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp\|P49045\|VPE_SOYBN Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1	Back alignment and function description

>sp\|Q39044\|VPEB_ARATH Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3	Back alignment and function description

>sp\|P49046\|LEGU_CANEN Legumain OS=Canavalia ensiformis PE=1 SV=1	Back alignment and function description

>sp\|O24326\|VPE2_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1	Back alignment and function description

>sp\|P49047\|VPEA_ARATH Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2	Back alignment and function description

>sp\|O24325\|VPE1_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1	Back alignment and function description

>sp\|P49043\|VPE_CITSI Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1	Back alignment and function description

>sp\|Q39119\|VPEG_ARATH Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2	Back alignment and function description

>sp\|P49044\|VPE_VICSA Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		282
449459758		490	PREDICTED: vacuolar-processing enzyme-li	0.946	0.544	0.795	1e-128
255537021		497	Vacuolar-processing enzyme precursor [Ri	0.996	0.565	0.756	1e-127
357476961		487	Vacuolar-processing enzyme [Medicago tru	0.957	0.554	0.759	1e-125
357476965		366	Vacuolar-processing enzyme [Medicago tru	0.936	0.721	0.782	1e-125
351720847		495	vacuolar-processing enzyme precursor [Gl	0.968	0.551	0.752	1e-124
351723279		496	seed maturation protein PM40 precursor [	0.971	0.552	0.758	1e-124
15221556		486	vacuolar-processing enzyme beta-isozyme	0.971	0.563	0.752	1e-123
9622221		489	asparaginyl endopeptidase [Sesamum indic	0.929	0.535	0.815	1e-123
40809676		494	putative preprolegumain [Nicotiana tabac	1.0	0.570	0.737	1e-122
224074697		470	predicted protein [Populus trichocarpa]	0.971	0.582	0.735	1e-122

>gi\|449459758\|ref\|XP_004147613.1\| PREDICTED: vacuolar-processing enzyme-like [Cucumis sativus] gi\|449506164\|ref\|XP_004162670.1\| PREDICTED: vacuolar-processing enzyme-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/269 (79%), Positives = 243/269 (90%), Gaps = 2/269 (0%)

Query: 1   MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSG 60
           MYDDIA + LNPRPG+IINHPQGE++Y GVPKDYTGEHVTAQNLYAVLLG+R AV GGSG
Sbjct: 95  MYDDIATNVLNPRPGIIINHPQGEDVYAGVPKDYTGEHVTAQNLYAVLLGNRTAVDGGSG 154

Query: 61  KVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEAC 120
           KVV+SK NDRIF++YSDHGGPGVLGMPN+P+VYAM+FI+VLKKKHAAK YK MVIYVEAC
Sbjct: 155 KVVDSKPNDRIFVYYSDHGGPGVLGMPNLPFVYAMDFIEVLKKKHAAKGYKEMVIYVEAC 214

Query: 121 ESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDS 180
           ESGSIFEG++PKDL+IYVTTASNAQESSFGTYCPGM+P+PPPEY+TCLGDLYSVAWMEDS
Sbjct: 215 ESGSIFEGILPKDLNIYVTTASNAQESSFGTYCPGMEPAPPPEYMTCLGDLYSVAWMEDS 274

Query: 181 ETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFP 240
           ETHNLKRETI QQY+ VKERTSN NN N+GSHVMEYGN+S+K+E+LYLYQGFDPAS N P
Sbjct: 275 ETHNLKRETIDQQYRTVKERTSNPNNLNTGSHVMEYGNSSIKAERLYLYQGFDPASVNLP 334

Query: 241 P--NKLQPDQMGVVNQRDADLLFMWHMQR 267
           P   + +   M  +NQRDAD+ F+W M R
Sbjct: 335 PYNGRYEMKSMDAINQRDADIFFLWQMYR 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255537021\|ref\|XP_002509577.1\| Vacuolar-processing enzyme precursor [Ricinus communis] gi\|1351409\|sp\|P49042.1\|VPE_RICCO RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi\|471162\|dbj\|BAA04225.1\| precursor of vacuolar processing enzyme [Ricinus communis] gi\|223549476\|gb\|EEF50964.1\| Vacuolar-processing enzyme precursor [Ricinus communis]	Back alignment and taxonomy information

>gi\|357476961\|ref\|XP_003608766.1\| Vacuolar-processing enzyme [Medicago truncatula] gi\|355509821\|gb\|AES90963.1\| Vacuolar-processing enzyme [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357476965\|ref\|XP_003608768.1\| Vacuolar-processing enzyme [Medicago truncatula] gi\|355509823\|gb\|AES90965.1\| Vacuolar-processing enzyme [Medicago truncatula]	Back alignment and taxonomy information

>gi\|351720847\|ref\|NP_001236678.1\| vacuolar-processing enzyme precursor [Glycine max] gi\|1351410\|sp\|P49045.1\|VPE_SOYBN RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi\|511938\|dbj\|BAA06030.1\| cysteine proteinase [Glycine max]	Back alignment and taxonomy information

>gi\|351723279\|ref\|NP_001238297.1\| seed maturation protein PM40 precursor [Glycine max] gi\|9622155\|gb\|AAF89646.1\|AF169019_1 seed maturation protein PM40 [Glycine max]	Back alignment and taxonomy information

>gi|15221556|ref|NP_176458.1| vacuolar-processing enzyme beta-isozyme [Arabidopsis thaliana] gi|22002012|sp|Q39044.3|VPEB_ARATH RecName: Full=Vacuolar-processing enzyme beta-isozyme; AltName: Full=Beta-VPE; Flags: Precursor gi|14194097|gb|AAK56243.1|AF367254_1 At1g62710/F23N19_8 [Arabidopsis thaliana] gi|16323336|gb|AAL15381.1| At1g62710/F23N19_8 [Arabidopsis thaliana] gi|332195875|gb|AEE33996.1| vacuolar-processing enzyme beta-isozyme [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|9622221\|gb\|AAF89679.1\| asparaginyl endopeptidase [Sesamum indicum]	Back alignment and taxonomy information

>gi\|40809676\|emb\|CAB42651.2\| putative preprolegumain [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|224074697\|ref\|XP_002304429.1\| predicted protein [Populus trichocarpa] gi\|222841861\|gb\|EEE79408.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		282
TAIR\|locus:2026242		486	BETA-VPE "beta vacuolar proces	0.946	0.549	0.772	2.1e-116
TAIR\|locus:2123782		494	GAMMA-VPE "gamma vacuolar proc	0.992	0.566	0.610	5e-92
TAIR\|locus:2043510		478	ALPHA-VPE "alpha-vacuolar proc	0.985	0.581	0.6	2.5e-90
TAIR\|locus:2087625		466	DELTA-VPE "delta vacuolar proc	0.921	0.557	0.509	1.7e-68
RGD\|619832		435	Lgmn "legumain" [Rattus norveg	0.797	0.517	0.465	2.4e-51
UNIPROTKB\|Q9R0J8		435	Lgmn "Legumain" [Rattus norveg	0.797	0.517	0.465	2.4e-51
UNIPROTKB\|Q95M12		433	LGMN "Legumain" [Bos taurus (t	0.762	0.496	0.465	3.6e-50
UNIPROTKB\|E2QXF2		433	LGMN "Uncharacterized protein"	0.797	0.519	0.457	3.6e-50
UNIPROTKB\|Q86TV2		372	LGMN "Legumain" [Homo sapiens	0.794	0.602	0.454	5.8e-50
UNIPROTKB\|Q86TV3		376	LGMN "Full-length cDNA clone C	0.794	0.595	0.454	5.8e-50

TAIR\|locus:2026242 BETA-VPE "beta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
 Identities = 207/268 (77%), Positives = 235/268 (87%)

Query:     1 MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSG 60
             MYDDIA H LNPRPG +INHP G+++Y GVPKDYTG  VTA N YAVLLGD+KAVKGGSG
Sbjct:    92 MYDDIANHPLNPRPGTLINHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKGGSG 151

Query:    61 KVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEAC 120
             KV+ SK ND IF++Y+DHGGPGVLGMPN P++YA +FI+ LKKKHA+ +YK MVIYVEAC
Sbjct:   152 KVIASKPNDHIFVYYADHGGPGVLGMPNTPHIYAADFIETLKKKHASGTYKEMVIYVEAC 211

Query:   121 ESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDS 180
             ESGSIFEG+MPKDL+IYVTTASNAQESS+GTYCPGM+PSPP EYITCLGDLYSVAWMEDS
Sbjct:   212 ESGSIFEGIMPKDLNIYVTTASNAQESSYGTYCPGMNPSPPSEYITCLGDLYSVAWMEDS 271

Query:   181 ETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFP 240
             ETHNLK+ETI QQY  VK RTSN+N Y+ GSHVMEYGN S+KSEKLYLYQGFDPA+ N P
Sbjct:   272 ETHNLKKETIKQQYHTVKMRTSNYNTYSGGSHVMEYGNNSIKSEKLYLYQGFDPATVNLP 331

Query:   241 PNKLQ-PDQMGVVNQRDADLLFMWHMQR 267
              N+L    ++GVVNQRDADLLF+WHM R
Sbjct:   332 LNELPVKSKIGVVNQRDADLLFLWHMYR 359

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0006624 "vacuolar protein processing" evidence=ISS

TAIR\|locus:2123782 GAMMA-VPE "gamma vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043510 ALPHA-VPE "alpha-vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087625 DELTA-VPE "delta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

RGD\|619832 Lgmn "legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9R0J8 Lgmn "Legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q95M12 LGMN "Legumain" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXF2 LGMN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TV2 LGMN "Legumain" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TV3 LGMN "Full-length cDNA clone CS0DB001YK19 of Neuroblastoma of Homo sapiens (human)" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49045	VPE_SOYBN	3, ., 4, ., 2, 2, ., -	0.7527	0.9680	0.5515	yes	no
Q39044	VPEB_ARATH	3, ., 4, ., 2, 2, ., -	0.7527	0.9716	0.5637	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.921
3rd Layer	3.4.22.34	0.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.127.139.1	annotation not avaliable (493 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		282
pfam01650		258	pfam01650, Peptidase_C13, Peptidase C13 family	1e-119
COG5206		382	COG5206, GPI8, Glycosylphosphatidylinositol transa	3e-07

>gnl\|CDD\|216627 pfam01650, Peptidase_C13, Peptidase C13 family	Back alignment and domain information

 Score =  340 bits (875), Expect = e-119
 Identities = 129/232 (55%), Positives = 164/232 (70%), Gaps = 15/232 (6%)

Query: 1   MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSG 60
           MYDDIA +  NP PG I N P G ++Y GVP DYTG  VT +N  AVLLGD+ A+KG SG
Sbjct: 42  MYDDIANNPENPFPGKIFNKPNGTDVYKGVPIDYTGNDVTPRNFLAVLLGDKSALKG-SG 100

Query: 61  KVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEAC 120
           KV+ S  ND +FI+++DHG PGVLG P + Y+YA +  + LKK HA   YK +V YVEAC
Sbjct: 101 KVLKSGPNDNVFIYFTDHGAPGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYVEAC 160

Query: 121 ESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDS 180
           ESGS+FEG +PKD++IY TTA+NA ESS+GTYC      P PE  TCLGDL+SV WMEDS
Sbjct: 161 ESGSMFEG-LPKDINIYATTAANADESSWGTYC------PDPEDGTCLGDLFSVNWMEDS 213

Query: 181 ETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGF 232
           + H+L +ET+ QQ++ VK RT       +GSHVM+YG+ S+    + L+QG 
Sbjct: 214 DDHDLSKETLEQQFELVKNRT-------TGSHVMQYGDKSIPQLPVSLFQGT 258

Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed. Length = 258

>gnl\|CDD\|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		282
KOG1348		477	consensus Asparaginyl peptidases [Posttranslationa	100.0
PF01650		256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	100.0
KOG1349		309	consensus Gpi-anchor transamidase [Posttranslation	100.0
COG5206		382	GPI8 Glycosylphosphatidylinositol transamidase (GP	100.0
PF00656		248	Peptidase_C14: Caspase domain; InterPro: IPR011600	98.66
smart00115		241	CASc Caspase, interleukin-1 beta converting enzyme	97.08
cd00032		243	CASc Caspase, interleukin-1 beta converting enzyme	96.66
KOG1546		362	consensus Metacaspase involved in regulation of ap	96.36
PF14538		154	Raptor_N: Raptor N-terminal CASPase like domain	92.58
PF12770		287	CHAT: CHAT domain	90.23
PF01364		378	Peptidase_C25: Peptidase family C25 This family be	82.61

>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1.1e-103  Score=741.16  Aligned_cols=280  Identities=61%  Similarity=1.053  Sum_probs=269.1

Q ss_pred             CCcccCCCCCCCCCCeEeeCCCCCCccCCccccCCCCCCCHHHHHHHHcCCCCCccCCCCceecCCCCCeEEEEEecCCC
Q 023458            1 MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGG   80 (282)
Q Consensus         1 myDDiA~n~~Np~pG~i~n~~~g~nvY~gv~iDY~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFiY~tgHGg   80 (282)
                      ||||||+||+||+||+|||+|+|+|||+||+|||||++|||+||++||+|++++++|||||||+|+|||||||||+||||
T Consensus        87 MYDDIA~~~~NPrpG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~  166 (477)
T KOG1348|consen   87 MYDDIANNEENPRPGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGG  166 (477)
T ss_pred             EehhhhcCCCCCCCceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEecccccccccccCCCCCCEEEEeccCCCCccccccCCCCCCCC
Q 023458           81 PGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSP  160 (282)
Q Consensus        81 ~g~l~fpd~~~L~a~dL~~~l~~M~~~~~Ykk~v~~iEAC~SGSmf~~~lp~~~nV~~iTAS~~~EsSya~~~~~~~~~~  160 (282)
                      +|+|.||+++.|+++||+++|++||+.++|++||||+|||||||||+++||+++||||+||||+.||||++|||+++|+|
T Consensus       167 pGvl~mP~~~~l~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psp  246 (477)
T KOG1348|consen  167 PGVLGMPTSPDLYAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSP  246 (477)
T ss_pred             CceEecCCCcchhHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCC
Confidence            99999999989999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccchhhhhhhhhhhhhhccccCchhcHHHHHHHHHhhhccCCCCCCCCccceecCCccccccceeecccCCCCCCCC
Q 023458          161 PPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFP  240 (282)
Q Consensus       161 ~~~~~t~lgD~fS~~wme~~~~~~~~~~Tl~~~f~~vk~~t~~~~~~~~~Shv~~yGd~~~~~~~l~~f~g~~~~~~~~~  240 (282)
                      ++++.|||||+||++||||++.+|+++|||.+||+.||++|+.+  |..|||||||||..|++++|..|||.+|++++++
T Consensus       247 pse~~tcLGDlySV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s--~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~  324 (477)
T KOG1348|consen  247 PSEYSTCLGDLYSVNWMEDSDVHDLKKETLHQQYHLVKKRTNTS--YSYGSHVMQYGDKTISKEKLMLFQGMKPANENFT  324 (477)
T ss_pred             hhhcccccccceeeeeeccCccccchHHHHHHHHHHHHHhcCCC--CCCcceeeecCcchhhHHHHHHHcCCCcccCCCC
Confidence            99999999999999999999999999999999999999999986  5578999999999999999999999999999876


Q ss_pred             C-CCCCCCCCCCCCCCchhHHHHHHHHHhcCCcHHHHHHhhhC
Q 023458          241 P-NKLQPDQMGVVNQRDADLLFMWHMQRDQKRNQKCLSRLQRQ  282 (282)
Q Consensus       241 ~-~~~~~~~~~~~~~rd~~l~~~~~~~~~~~~~~~~~~~~~~~  282 (282)
                      - +.+..+++..|||||++|++||+|++++++++.++.++|+|
T Consensus       325 l~~~s~~~~s~~~n~rD~~L~~l~~k~rka~dgs~~s~e~~k~  367 (477)
T KOG1348|consen  325 LPASSHKSPSGLTNQRDAPLLHLWRKYRKANDGSAESRELQKE  367 (477)
T ss_pred             CCccCcCCccccCCCCCccHHHHHHHHhcCcccchhhHHHHHH
Confidence            3 33444567789999999999999999999999888888764

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues	Back alignment and domain information

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)	Back alignment and domain information

>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14538 Raptor_N: Raptor N-terminal CASPase like domain	Back alignment and domain information

>PF12770 CHAT: CHAT domain	Back alignment and domain information

>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		282
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 54/361 (14%), Positives = 101/361 (27%), Gaps = 103/361 (28%)

Query: 1   MYDDIAMHELNPRPGVIINHPQGENLYDGVPKDYTGEHVTAQNLYAVLLGDRKAVK---- 56
           +   I   +  P     +   Q + LY+     +   +V+    Y  L   R+A+     
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKL---RQALLELRP 149

Query: 57  ---------GGSGK------VVNSKANDRIF---IFYSDHG------------------- 79
                     GSGK      V  S          IF+ +                     
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 80  ----GPGVLGMPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLD 135
                       N+           L++   +K Y+  ++ +   ++   +      +L 
Sbjct: 210 DPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---NLS 265

Query: 136 --IYVTT--ASNAQESSFGTYC-PGMDPSP----PPEYITCLGDLYSVAWMEDSETHNLK 186
             I +TT         S  T     +D       P E       L         +   L 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLKYLDCRPQD---LP 319

Query: 187 RET----------ISQQYQAVKERTSNFNNYNSG--SHVMEYGNTSVKSEKLYLYQG-FD 233
           RE           I++  +       N+ + N    + ++E   +S+   +   Y+  FD
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFD 376

Query: 234 -----PASTNFPPNKLQ--------PDQMGVVNQ-RDADLLFMWHMQRDQKRNQKCLSRL 279
                P S + P   L          D M VVN+     L+     ++  K +   +  +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-----EKQPKESTISIPSI 431

Query: 280 Q 280
            
Sbjct: 432 Y 432

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		282
3bij_A		285	Uncharacterized protein GSU0716; alpha-beta protei	99.18
4f6o_A		350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	98.64
4af8_A		367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	98.62
3uoa_B		390	Mucosa-associated lymphoid tissue lymphoma transl	98.39
1m72_A		272	Caspase-1; caspase, cysteine protease, hydrolase-h	96.29
3h11_B		271	Caspase-8; cell death, apoptosis, caspase, alterna	95.93
2j32_A		250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	95.9
3sir_A		259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	95.79
4ehd_A		277	Caspase-3; caspase, apoptosis, allosteric inhibiti	95.69
2nn3_C		310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	95.62
3od5_A		278	Caspase-6; caspase domain, apoptotic protease, hyd	95.53
1f1j_A		305	Caspase-7 protease; caspase-7, cysteine protease,	95.41
1nw9_B		277	Caspase 9, apoptosis-related cysteine protease; XI	95.24
2fp3_A		316	Caspase NC; apoptosis, initiator caspase activatio	95.0
3e4c_A		302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	94.01
2h54_A		178	Caspase-1; allosteric site, dimer interface, hydro	92.6
3h11_A		272	CAsp8 and FADD-like apoptosis regulator; cell deat	86.93
1pyo_A		167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	81.31

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}	Back alignment and structure

Probab=99.18  E-value=4.2e-11  Score=109.96  Aligned_cols=147  Identities=13%  Similarity=0.151  Sum_probs=104.7

Q ss_pred             CCCCCHHHHHHHHcCCCCCccCCCCceecCCCCCeEEEEEecCCCC-------------CccCCCCCCCCCHHHHHHHHH
Q 023458           36 GEHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGP-------------GVLGMPNMPYVYAMEFIDVLK  102 (282)
Q Consensus        36 g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFiY~tgHGg~-------------g~l~fpd~~~L~a~dL~~~l~  102 (282)
                      ..+.|.+|+++.|..-.          -...++|.+||||+|||..             ++|...|.. |..++|.+.|+
T Consensus        52 ~~~~t~~~i~~al~~l~----------~~~~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~~-i~~~~l~~~l~  120 (285)
T 3bij_A           52 TKAATRAKVIDAIGKAA----------KALGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDGE-LIDDELYALLG  120 (285)
T ss_dssp             GGGCCHHHHHHHHHHHH----------HHCCTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSSE-EEHHHHHHHHT
T ss_pred             CCccCHHHHHHHHHHHH----------HhCCCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCCC-ccHHHHHHHHH
Confidence            34678999988886221          1246889999999999962             355555554 77889998887


Q ss_pred             HHHHcCCCCeEEEEEecccccccccc----------------------cCC-----------------------------
Q 023458          103 KKHAAKSYKGMVIYVEACESGSIFEG----------------------VMP-----------------------------  131 (282)
Q Consensus       103 ~M~~~~~Ykk~v~~iEAC~SGSmf~~----------------------~lp-----------------------------  131 (282)
                      .|.   .-+++++++|||+||++...                      .+|                             
T Consensus       121 ~l~---~~~~~~vilD~C~SG~~~~~~p~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (285)
T 3bij_A          121 KFA---AGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAGPDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKTKKVDLAD  197 (285)
T ss_dssp             TSC---SSCEEEEEEECCCCCCHHHHHHTTC-------------CEESBCCHHHHHHHHHHTHHHHHHHHHHCCCCCTTT
T ss_pred             hcc---CCCeEEEEEecCCCCccccccccccccccccccccccccceeecCchhhhhhhhcchhHHHHHhhhcccccccC
Confidence            663   35789999999999998762                      011                             


Q ss_pred             CCCCEEEEeccCCCCccccccCCCCCCCCCCCccchhhhhhhhhhhhhhccccCchhcHHHHHHHHHhhhccCCCCCCCC
Q 023458          132 KDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGS  211 (282)
Q Consensus       132 ~~~nV~~iTAS~~~EsSya~~~~~~~~~~~~~~~t~lgD~fS~~wme~~~~~~~~~~Tl~~~f~~vk~~t~~~~~~~~~S  211 (282)
                      ...++++++|+.++|.||-.-          .-     -+||.++++-..... ...|+.++++.|++++..      ..
T Consensus       198 ~~~~~i~lsa~~~~q~A~e~~----------~~-----G~FT~aLl~~L~~~~-~~~s~~~l~~~v~~~~~~------~Q  255 (285)
T 3bij_A          198 VKASILLISGCQDNQLSQDGA----------FN-----GAFTGQLLRVWKNGL-YKGSYRSFHKAIVRRMPP------DQ  255 (285)
T ss_dssp             CSSEEEEEESSCTTSCCEECS----------SS-----CHHHHHHHHHHGGGT-CCSCHHHHHHHHHHHSCT------TC
T ss_pred             CCCCEEEEEeCCCCccccccc----------cC-----CHHHHHHHHHHhhCC-CCcCHHHHHHHHHHhcCC------CC
Confidence            123689999999999998531          11     368888886443221 346999999999987642      38


Q ss_pred             ccceecC
Q 023458          212 HVMEYGN  218 (282)
Q Consensus       212 hv~~yGd  218 (282)
                      |++.||.
T Consensus       256 ~P~~~~~  262 (285)
T 3bij_A          256 TPNFFTA  262 (285)
T ss_dssp             CCEEEEE
T ss_pred             CcceeCC
Confidence            8888875

PyMOL of 3bij

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}	Back alignment and structure

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A	Back alignment and structure

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*	Back alignment and structure

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B	Back alignment and structure

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*	Back alignment and structure

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A	Back alignment and structure

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A	Back alignment and structure

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A	Back alignment and structure

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}	Back alignment and structure

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*	Back alignment and structure

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*	Back alignment and structure

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A	Back alignment and structure

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}	Back alignment and structure

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}	Back alignment and structure

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...	Back alignment and structure

>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A	Back alignment and structure

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		282
g1qtn.1		242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	98.02
d1nw9b_		277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	97.72
g1pyo.1		257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	97.27
g1sc3.1		261	Interleukin-1beta converting enzyme (a cysteine pr	97.18
d1m72a_		256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	96.85
g1nme.1		238	Apopain (caspase-3, cpp32) {Human (Homo sapiens) [	96.75
d1f1ja_		245	Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	96.46

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3.4e-05  Score=66.76  Aligned_cols=142  Identities=18%  Similarity=0.187  Sum_probs=77.2

Q ss_pred             CCCHHHHHHHHcCCCCCccCCCCceecCCCCCeEEEEEecCCCCC-cc------CCCCCCCCCHHHHHHHHHHHH-HcCC
Q 023458           38 HVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGPG-VL------GMPNMPYVYAMEFIDVLKKKH-AAKS  109 (282)
Q Consensus        38 ~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFiY~tgHGg~g-~l------~fpd~~~L~a~dL~~~l~~M~-~~~~  109 (282)
                      +.|.+.+.+.|.--..       +  ...+.|.++|||+|||... .+      .-+++..+.-.++...+.... ..-+
T Consensus        67 nlt~~~~~~~l~~~~~-------~--~~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~  137 (277)
T d1nw9b_          67 DLTAKKMVLALLELAR-------Q--DHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLG  137 (277)
T ss_dssp             SCCHHHHHHHHHHHHH-------S--CCTTCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGT
T ss_pred             CCCHHHHHHHHHHhhh-------h--cccCCCEEEEEEeCCCcccccccccCcccCCccccccHHHHHHHhHHhhhhhcc
Confidence            4566666665542110       1  1256799999999999652 12      223444455556555443211 1233


Q ss_pred             CCeEEEEEecccccccccc--------------------------------------cCCCCCCEEEEeccCCCCccccc
Q 023458          110 YKGMVIYVEACESGSIFEG--------------------------------------VMPKDLDIYVTTASNAQESSFGT  151 (282)
Q Consensus       110 Ykk~v~~iEAC~SGSmf~~--------------------------------------~lp~~~nV~~iTAS~~~EsSya~  151 (282)
                      =|..+|+++||+++.+-.+                                      .+|...++++.-|+.++..||-.
T Consensus       138 ~kpki~~idaCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~i~~st~~g~~a~~~  217 (277)
T d1nw9b_         138 GKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRD  217 (277)
T ss_dssp             TSCEEEEEEEEC---------------------------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTC
T ss_pred             cCcEEEEEecccCCcccccccccccCcccccccccccccccchhcccccccccccccccCCcccceEEEecccceEEecC
Confidence            3556899999999865332                                      12333467777777777666532


Q ss_pred             cCCCCCCCCCCCccchhhhhhhhhhhhhhccccCchhcHHHHHHHHHhhhcc
Q 023458          152 YCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSN  203 (282)
Q Consensus       152 ~~~~~~~~~~~~~~t~lgD~fS~~wme~~~~~~~~~~Tl~~~f~~vk~~t~~  203 (282)
                                +..+    -+|....++-... .....+|.+++..|.+++..
T Consensus       218 ----------~~~g----S~f~~~L~~~l~~-~~~~~~l~~il~~V~~~V~~  254 (277)
T d1nw9b_         218 ----------PKSG----SWYVETLDDIFEQ-WAHSEDLQSLLLRVANAVSV  254 (277)
T ss_dssp             ----------TTSC----BHHHHHHHHHHHH-HTTTSCHHHHHHHHHHHHHT
T ss_pred             ----------CCCC----CHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHH
Confidence                      1222    2344444443322 12356899999999999865

PyMOL of d1nw9b_

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=96.85  E-value=0.0007  Score=58.36  Aligned_cols=142  Identities=11%  Similarity=0.126  Sum_probs=83.0

Q ss_pred             CCCCHHHHHHHHcCCCCCccCCCCceecCCCCCeEEEEEecCCCCCccCCCCCCCCCHHHHHHHHHHHHH-cCCCCeEEE
Q 023458           37 EHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHA-AKSYKGMVI  115 (282)
Q Consensus        37 ~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFiY~tgHGg~g~l~fpd~~~L~a~dL~~~l~~M~~-~~~Ykk~v~  115 (282)
                      .++|.+.+.++|.--.       .+ . -...|-++|||.|||+.++|.=-|.. +..+++...+..... .-+-|--+|
T Consensus        65 ~nlt~~~m~~~l~~~~-------~~-~-~~~~d~~vv~~~~HG~~~~i~~~D~~-~~~~~~~~~~~~~~~~~L~~KPKif  134 (256)
T d1m72a_          65 PNLKSEEINKFIQQTA-------EM-D-HSDADCLLVAVLTHGELGMLYAKDTH-YKPDNLWYYFTADKCPTLAGKPKLF  134 (256)
T ss_dssp             ESCCHHHHHHHHHHHH-------TS-C-CTTEEEEEEEEESCEETTEEECSSSE-ECTTHHHHTTSTTTCGGGTTSCEEE
T ss_pred             eCCCHHHHHHHHHHHh-------hh-h-ccCCCeEEEEEeccCcCCEEEecCCc-ccchHHhhhhhhhhhHHHcCCcEEE
Confidence            3567777776665111       11 0 13457899999999999977554543 555666555422111 111122489


Q ss_pred             EEecccccccccc----------------cCCCCCCEEEEeccCCCCccccccCCCCCCCCCCCccchhhhhhhhhhhhh
Q 023458          116 YVEACESGSIFEG----------------VMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMED  179 (282)
Q Consensus       116 ~iEAC~SGSmf~~----------------~lp~~~nV~~iTAS~~~EsSya~~~~~~~~~~~~~~~t~lgD~fS~~wme~  179 (282)
                      +++||...-+-.+                .+|...++++.-|+.++.-||..-          ..+    -+|.-.+++-
T Consensus       135 ~lqACRg~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lia~st~~g~~a~~~~----------~~g----S~fi~~L~~~  200 (256)
T d1m72a_         135 FIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPGYFSWRNT----------TRG----SWFMQALCEE  200 (256)
T ss_dssp             EEESCSSSBCBCCEEEEC---------CEEECTTCSEEEEESSCTTBCCEEET----------TTE----EHHHHHHHHH
T ss_pred             EEecCcCCcccCCccccccccccccccccccCCCCCeeEEEecccceeeccCC----------CCC----CHHHHHHHHH
Confidence            9999997544221                123335788888888777776531          222    3454444443


Q ss_pred             hccccCchhcHHHHHHHHHhhhcc
Q 023458          180 SETHNLKRETISQQYQAVKERTSN  203 (282)
Q Consensus       180 ~~~~~~~~~Tl~~~f~~vk~~t~~  203 (282)
                      ... ....+.|.+++..|.+++..
T Consensus       201 l~~-~~~~~~l~~il~~V~~~V~~  223 (256)
T d1m72a_         201 LRY-AGTERDILTLLTFVCQKVAL  223 (256)
T ss_dssp             HHH-HTTTSCHHHHHHHHHHHHHH
T ss_pred             HHH-hCCCCCHHHHHHHHHHHHHH
Confidence            322 22457899999999998864

PyMOL of d1m72a_

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0027  Score=53.89  Aligned_cols=142  Identities=14%  Similarity=0.182  Sum_probs=81.2

Q ss_pred             CCCCHHHHHHHHcCCCCCccCCCCceecCCCCCeEEEEEecCCCCCccCCCCCCCCCHHHHHHHHHHHHHc-CCCCeEEE
Q 023458           37 EHVTAQNLYAVLLGDRKAVKGGSGKVVNSKANDRIFIFYSDHGGPGVLGMPNMPYVYAMEFIDVLKKKHAA-KSYKGMVI  115 (282)
Q Consensus        37 ~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFiY~tgHGg~g~l~fpd~~~L~a~dL~~~l~~M~~~-~~Ykk~v~  115 (282)
                      .++|.+.+.++|.--..       + . -...|.++|||.|||..+.|.=.|. .+..+++...+..-.-. -+-|-.+|
T Consensus        55 ~nl~~~em~~~l~~~~~-------~-~-~~~~~~~vv~~~~HG~~~~i~g~d~-~~~v~~~~~~~~~~~~~~L~~kpKif  124 (245)
T d1f1ja_          55 NDCSCAKMQDLLKKASE-------E-D-HTNAACFACILLSHGEENVIYGKDG-VTPIKDLTAHFRGDRSKTLLEKPKLF  124 (245)
T ss_dssp             ESCCHHHHHHHHHHHHH-------S-C-GGGEEEEEEEEESCEETTEEECSSS-EEEHHHHHHTTSTTTCGGGTTSCEEE
T ss_pred             cCCCHHHHHHHHHHHHH-------H-h-ccCCceEEEEEeeccccceEecCCC-cEEcchhhhhccchhhHHHhhcchhh
Confidence            35666666666662110       1 0 1235789999999999986654454 36666666555321111 11122478


Q ss_pred             EEeccccccccccc-----------------CCCCCCEEEEeccCCCCccccccCCCCCCCCCCCccchhhhhhhhhhhh
Q 023458          116 YVEACESGSIFEGV-----------------MPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWME  178 (282)
Q Consensus       116 ~iEAC~SGSmf~~~-----------------lp~~~nV~~iTAS~~~EsSya~~~~~~~~~~~~~~~t~lgD~fS~~wme  178 (282)
                      +++||.++.+-.++                 +|...++++.-|+.++..||-.              +.-|-+|.-.+++
T Consensus       125 ~iqaCrg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~li~~st~~g~~a~~~--------------~~~gS~fi~~L~~  190 (245)
T d1f1ja_         125 FIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRS--------------PGRGSWFVQALCS  190 (245)
T ss_dssp             EEESCCSSBCBCCBC---------------CBCTTTTEEEEESSCTTBCCEEE--------------TTTEEHHHHHHHH
T ss_pred             ehhhhcCcccccceeecCCCCCccccccccccCCCCCeEEEEecCCCceeccC--------------CCCCCHHHHHHHH
Confidence            99999987653221                 2233356666666666655532              1123345545554


Q ss_pred             hhccccCchhcHHHHHHHHHhhhcc
Q 023458          179 DSETHNLKRETISQQYQAVKERTSN  203 (282)
Q Consensus       179 ~~~~~~~~~~Tl~~~f~~vk~~t~~  203 (282)
                      -...+ ...+.|.+++..|.+++..
T Consensus       191 ~l~~~-~~~~~l~~il~~V~~~V~~  214 (245)
T d1f1ja_         191 ILEEH-GKDLEIMQILTRVNDRVAR  214 (245)
T ss_dssp             HHHHH-TTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHh-CCCCCHHHHHHHHHHHHHH
Confidence            33322 3456899999999998864

PyMOL of d1f1ja_