Citrus Sinensis ID: 023485

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLGK
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccHHHHHHHHcccHHHHHHHccccccccccccccHHHHccccccccccccHHHHHHHHHHcccccccccccEEEEccccccEEEEEEEEEEEEEEcccccEEEEEEcccccccccEEEEEEEEEEEEEEEEccccccccEEEEEEEEEEccccccEEEccEEEEEEEEccEEEEEEEEcccccccccccEEEcccccccccccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEEEcccccccEEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHcccccccccccHHHHHHHHHcccEEcccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEcEEcccccccccEEEEEEEEEEcccccccccccEEEEEEEccccEcEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
mellpegcianaisfttprdacrlsSVSAIFKLAAESdavwesflppdystllsssssssslrssskkELYFSlchnpilidegkksfsldkqsgkkcymiSARDLLIVwgntptywswtsipearfpEVAELICVCWLEIrgkistrslspgtlYTAYLVYKLTagsfgfeyqPVVVSVGLvsgesqtrTVYLEEEIGLRqgyhgllnrsssqastpkendgyfpkerkdEWLEielgdffneedvedgeLEMSVLELACGhwkcglviqgieirpklgk
Flexible Loop (DISEMBL)
MELLPEGCIANAisfttprdacRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLRSSSKKELYFSLCHNpilidegkksfsldkqsGKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGkistrslspgtLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEEIGLRQGYHGLlnrsssqastpkendgyfpkERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLGK
Low Complexity Region (SEG)
MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYstllsssssssslrsssKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPvvvsvglvsgESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLGK
Disordered region (IsUnstruct)
******GCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPP**********************LYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEEIGLRQGYHGLL***********************EWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEI******
Disordered Region (DISOPRED)
MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSS**SSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEEIGLRQGYHGLLNRS****************ERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKL**
Disordered Region (DISEMBL)
MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYS******************ELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEEIGLRQGYHGLLN***************FPKERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLGK
Disordered Region (DISPRO)
MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEE*************************GYFPKERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLGK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q3E6P4	320	F-box protein At2g02240 O	yes	no	0.911	0.8	0.501	1e-71
Q9ZVR5	310	Putative F-box protein PP	no	no	0.900	0.816	0.483	8e-67
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.893	0.922	0.472	2e-66
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.971	0.812	0.433	1e-62
Q9FLU7	251	Putative F-box protein PP	no	no	0.857	0.960	0.476	7e-62
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.932	0.859	0.466	1e-60
Q949S5	257	F-box protein PP2-B11 OS=	no	no	0.907	0.992	0.458	5e-56
Q9C7J9	284	F-box protein PP2-B13 OS=	no	no	0.967	0.957	0.438	2e-54
O80494	289	F-box protein PP2-B15 OS=	no	no	0.975	0.948	0.412	4e-53
Q9C7K0	282	F-box protein VBF OS=Arab	no	no	0.971	0.968	0.433	9e-53

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/277 (50%), Positives = 183/277 (66%), Gaps = 21/277 (7%)

Query: 1   MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSS 60
            ++LPE CI+N ISFT+PRDAC  +SVS  F+ A  SD VW+ FLPP+Y +L+S S   +
Sbjct: 61  FDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFA 120

Query: 61  SLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWT 120
           S     KKELYF+LCHNP+LI++GKKSF L+K SGK+C M+S+++L I WG++P YW W 
Sbjct: 121 S-----KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWI 175

Query: 121 SIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSV 180
           SIPE+RF ++AEL+ VCW EIRGK S R LSPGT Y+AY+V+K      G  + PV V +
Sbjct: 176 SIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGL 235

Query: 181 GLVSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGD 240
           GLV  ES  R +Y    IG              +    +  D   P +R+D W+E ELG+
Sbjct: 236 GLVGQESSKRFIYF---IG-----------PRDRRGRRETRDVTKPDQREDGWMEAELGE 281

Query: 241 FFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRP 277
           FFNEE  +  E+E SV+E+    WK GL+IQGIE RP
Sbjct: 282 FFNEERCD--EIEFSVIEIKSPSWKSGLIIQGIEFRP 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  253 bits (647), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 133/275 (48%), Positives = 176/275 (64%), Gaps = 22/275 (8%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLR 63
           LPE CI+N ISFT+PRDAC  +SVS  F+ A  SD+VW+ FLP DYS+L+  S   SS  
Sbjct: 50  LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSS-- 107

Query: 64  SSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARD-LLIVWGNTPTYWSWTSI 122
              KKELYF++C NP+L+++G KSF L+K++GKKC+M+S +  + I W +TP YW W SI
Sbjct: 108 ---KKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISI 164

Query: 123 PEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGL 182
           PEARF EV EL+ VCW E+RG ++T+ LSPGT Y+AY+V+K   G       PV  +VGL
Sbjct: 165 PEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGL 224

Query: 183 VSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDFF 242
           V  ES  R +Y    +G            S Q    +  D   P +RKD W+E ELG FF
Sbjct: 225 VGQESSQRHIYF---VG-----------PSDQRRDRETRDVTRPTKRKDGWMEAELGQFF 270

Query: 243 NEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRP 277
           NE   +   ++ S+LE+   +WK GL+IQGIE RP
Sbjct: 271 NESGCD--VVDTSILEIKTPYWKRGLIIQGIEFRP 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 174/275 (63%), Gaps = 24/275 (8%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLR 63
            PE CI+  ISFT PRDAC  ++VS  F+   +SD +WE FLP DY +L+  S   SS  
Sbjct: 17  FPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS-- 74

Query: 64  SSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIP 123
              KKELYFSLC++P+L D+ KKS  L+K SGK+C M+SA +L I+WG+ P YW W  IP
Sbjct: 75  ---KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIP 131

Query: 124 EARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLV 183
           E+RF +VA+L  VCW EIRG+ +TR LSP T Y+AY+V+K     +GF+   +  +VG+V
Sbjct: 132 ESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVV 191

Query: 184 SGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDFFN 243
             E   R +   E I  R+G   ++                 PK+R+D W+EIELG+FFN
Sbjct: 192 GQEPSRRLICFSEAI--RRGRRNVVK----------------PKQREDGWMEIELGEFFN 233

Query: 244 EEDVEDG-ELEMSVLELACGHWKCGLVIQGIEIRP 277
           +  + D  E+EMS LE    + KCGL+IQGIEIRP
Sbjct: 234 DGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRP 268

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score =  239 bits (611), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/307 (43%), Positives = 185/307 (60%), Gaps = 34/307 (11%)

Query: 1   MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSS 60
            + LPE CI+  IS T+PRDAC ++SVS   K AA+SD VWE FLP +YS+L+  S++  
Sbjct: 32  FDALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHL 91

Query: 61  SLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWT 120
           S     KKE++ SL  N +L++ GKKSF ++K SGKKCYM+SA +L I+WG++P YW W 
Sbjct: 92  S-----KKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWI 146

Query: 121 SIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAG-SFGFEYQPVVVS 179
           ++PE++F +VAEL  VCW E+RGKIS   LS GT Y+ Y+V+K   G S+GF+  PV   
Sbjct: 147 TVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAG 206

Query: 180 VGLVSGESQTRTVYLE----EEIGLRQGYHGLLNRSSSQASTPKE--------------- 220
           VG V   +  ++VY E    +       Y G+     S+A   +                
Sbjct: 207 VGFVGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVEG 266

Query: 221 -----NDGYFPKERKDEWLEIELGDFF--NEEDVEDG--ELEMSVLELACGHWKCGLVIQ 271
                 +   PKER D W E+ELG F+  N    +DG  E+E+S++E   G+WK GL+IQ
Sbjct: 267 ERERGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQ 326

Query: 272 GIEIRPK 278
           GIEIRP+
Sbjct: 327 GIEIRPE 333

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score =  237 bits (605), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 132/277 (47%), Positives = 173/277 (62%), Gaps = 36/277 (12%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLR 63
           LPE CIA  ISFT+P DACR+S+VS + + AA+S+  WE FLP DY   + +S     L 
Sbjct: 6   LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNS-----LS 60

Query: 64  SSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIP 123
             S K+L+   C +P+LI++G+ SF ++K+SGKKC+M+SAR L IVW ++P +W W SIP
Sbjct: 61  RFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIP 120

Query: 124 EARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYK-LTAGSFGFEYQPVVVSVGL 182
           ++RF EVA L+ VCW EIRGKIST  LS  T Y+AYLV+K    GSFGFE  P+ VS   
Sbjct: 121 DSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLPLEVSF-- 178

Query: 183 VSGESQTRT-VYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDF 241
                 TRT VY    + L+ G                       + R+D WLEIELG++
Sbjct: 179 ----RSTRTEVYNNRRVFLKSGTQ---------------------ESREDGWLEIELGEY 213

Query: 242 FNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278
           +   D  D E+EMSVLE   G WK G+++QGIEIRPK
Sbjct: 214 YVGFD--DEEIEMSVLETREGGWKGGIIVQGIEIRPK 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/281 (46%), Positives = 177/281 (62%), Gaps = 19/281 (6%)

Query: 1   MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSS 60
           ++ LPE C++  +SFT+P+DAC L+SVS  F  A +SD VWE F+PP+Y +L+S S +  
Sbjct: 36  LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFK 95

Query: 61  SLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWT 120
            L   SKKELYF+LC   +LID+GKKS  ++K + K+C MISA +L I WGN+P  W W 
Sbjct: 96  FL---SKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWI 152

Query: 121 SIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSV 180
             P+ARF  VAEL+ VC  EIRG+I++R +SP T Y+AY+VYK     +GFE   V V V
Sbjct: 153 PDPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVV 212

Query: 181 GLVSG---ESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIE 237
           G+V     ES  R +  +E +  +        R     +  K      P+ RKD W+EI+
Sbjct: 213 GVVGQDLEESCRRYICFDETMDEQ------FRRRDRGKNLVK------PERRKDGWMEIK 260

Query: 238 LGDFFNEED-VEDGELEMSVLELACGHWKCGLVIQGIEIRP 277
           +G+FFNE   + D E+EM  LE    HWK GL+IQGIEIRP
Sbjct: 261 IGEFFNEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRP 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q949S5|P2B11_ARATH F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1

 Score =  218 bits (554), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 127/277 (45%), Positives = 161/277 (58%), Gaps = 22/277 (7%)

Query: 1   MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSS 60
           M  LPE CIA  +S TTP D CRLS+VS+IF+ AA SD VW  FLP D+    ++ +   
Sbjct: 1   MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFAAPAGLP 60

Query: 61  SLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWT 120
           +     +K+L+FSL  NP+LI+    SFSL+++SG KCYM++AR L IVWG+   YW W 
Sbjct: 61  T-----RKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWI 115

Query: 121 SIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSV 180
           S+P  RF EVAELI V WLEI GKI+   LS  TLY AY V+K     +GF  QPV  S+
Sbjct: 116 SLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFR-QPVETSL 174

Query: 181 GLVSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGD 240
            L   ES T  V     I L Q   G               +G  P  R+D W E+ELG 
Sbjct: 175 VLADTES-TDNVVQPSMISLMQDSGG--------------EEGQSPVLRRDGWYEVELGQ 219

Query: 241 FFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRP 277
           FF     + GE+EMS+ E    + K GL++ GIEIRP
Sbjct: 220 FFKRRG-DLGEIEMSLKETKGPYEKKGLIVYGIEIRP 255

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7J9|P2B13_ARATH F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/285 (43%), Positives = 178/285 (62%), Gaps = 13/285 (4%)

Query: 1   MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSS 60
           M +LPE C+AN ++FT+P DA   S VS++F+LA +SD VWE FLP  Y +L+S S+   
Sbjct: 1   MMMLPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHH 60

Query: 61  SLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWT 120
            +  SSKKE+Y  LC + +LID  +K F ++K SGK  Y++SARD+ I + +  +Y SW+
Sbjct: 61  RI-FSSKKEIYRCLC-DSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWS 118

Query: 121 SIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSV 180
           ++ ++RF E AELI    LEI+GKI T  LSP T Y AYL+ K+T G++G +  P   SV
Sbjct: 119 NVSDSRFSESAELITTDRLEIKGKIQTTVLSPNTKYGAYLIMKVTNGAYGLDLVPAETSV 178

Query: 181 GLVSGESQTRTVYL----EEEIGLRQGYHGLLNRSSSQASTPKE--NDGYF--PKERKDE 232
              +G++   T YL    E++  +++ ++G  NR    A T +    DG    PK R D 
Sbjct: 179 KSKNGQNNKNTTYLCCLDEKKQQMKRLFYG--NREERMAMTVEAVGGDGKRREPKARDDG 236

Query: 233 WLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRP 277
           WLEIELG+F   E  ED E+ MS+ E+     K G+VI GIE+RP
Sbjct: 237 WLEIELGEFVTREG-EDDEVNMSLTEVKGYQLKGGIVIDGIEVRP 280

Arabidopsis thaliana (taxid: 3702)

>sp|O80494|P2B15_ARATH F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2

 Score =  208 bits (529), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 116/281 (41%), Positives = 168/281 (59%), Gaps = 7/281 (2%)

Query: 3   LLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSL 62
           +LPE C+A  +SFTTP D    ++VS++F++A +SD VWE FLP DY  ++S S+    +
Sbjct: 2   MLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRI 61

Query: 63  RSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSI 122
             SSKKELY  LC + ILID G+K F ++K SGK  Y++S+RDL I W +   YWSW+  
Sbjct: 62  -FSSKKELYRCLCES-ILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPR 119

Query: 123 PEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGL 182
            ++RF E  +LI   WLEI GKI T +LSP T Y AYL+ K+T+ ++G +  P   S+ +
Sbjct: 120 SDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKV 179

Query: 183 VSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKE---NDGYFPKERKDEWLEIELG 239
            +GE + ++ YL      +Q    +      Q     E   +    P+ R D W+EIELG
Sbjct: 180 GNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIELG 239

Query: 240 DF--FNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278
           +F   + E  +D E+ MS+ E+     K G+ I GIE+RPK
Sbjct: 240 EFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7K0|VBF_ARATH F-box protein VBF OS=Arabidopsis thaliana GN=VBF PE=1 SV=1

 Score =  207 bits (526), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 124/286 (43%), Positives = 176/286 (61%), Gaps = 13/286 (4%)

Query: 1   MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSS 60
           M +LPE CIAN ++FT+P DA   S VS++F+LA +SD VWE FLP DY +L+S S+   
Sbjct: 1   MMMLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHH 60

Query: 61  SLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWT 120
               SSKKE+Y  LC + +LID  +K F ++K SGK  Y++SARD+ I   +  +YWSW+
Sbjct: 61  -WNISSKKEIYRCLC-DSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWS 118

Query: 121 SIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSV 180
           ++ ++RF E AELI    LEI GKI TR LS  T Y AYL+ K+T G++G +  P   S+
Sbjct: 119 NVSDSRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSI 178

Query: 181 GLVSGESQTRTVYL----EEEIGLRQGYHGLLNRSSSQASTPKE--NDGYF--PKERKDE 232
              +G+      YL    E++  +++ ++G  NR    A T +    DG    PK R D 
Sbjct: 179 KSKNGQISKSATYLCCLDEKKQQMKRLFYG--NREERMAMTVEAVGGDGKRREPKCRDDG 236

Query: 233 WLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278
           W+EIELG+F   E  ED E+ M++ E+     K G++I GIE+RPK
Sbjct: 237 WMEIELGEFETREG-EDDEVNMTLTEVKGYQLKGGILIDGIEVRPK 281

Component of SCF(VBF) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins such as VIP1 and Agrobacterium virE2, after their implication in T-DNA translocation to the host nucleus (can functionally replace Agrobacterium VirF). Required during Agrobacterium-induced tumor formation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
255545406	301	conserved hypothetical protein [Ricinus	0.978	0.913	0.616	5e-90
224141999	304	predicted protein [Populus trichocarpa]	0.996	0.921	0.604	6e-90
224089414	292	f-box family protein [Populus trichocarp	0.992	0.955	0.604	5e-88
255543080	315	conserved hypothetical protein [Ricinus	0.982	0.876	0.629	2e-87
449442263	322	PREDICTED: F-box protein At2g02240-like	0.971	0.847	0.540	2e-83
356576652	303	PREDICTED: F-box protein PP2-B1-like [Gl	0.964	0.894	0.573	9e-82
296088854	287	unnamed protein product [Vitis vinifera]	0.928	0.909	0.547	3e-79
217071814	310	unknown [Medicago truncatula]	0.975	0.883	0.534	1e-78
357441181	310	F-box protein PP2-B1 [Medicago truncatul	0.975	0.883	0.530	3e-78
224141993	398	f-box family protein [Populus trichocarp	0.967	0.683	0.550	9e-78

>gi|255545406|ref|XP_002513763.1| conserved hypothetical protein [Ricinus communis] gi|223546849|gb|EEF48346.1| conserved hypothetical protein [Ricinus communis]

 Score =  337 bits (863), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 177/287 (61%), Positives = 211/287 (73%), Gaps = 12/287 (4%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSL- 62
           LPEGCIA+ +SFT P DACRLS+VS+ F+ AA SD VWE FLP DY +++S SS S  L 
Sbjct: 15  LPEGCIADVVSFTGPFDACRLSTVSSTFRDAANSDTVWEKFLPQDYHSIISRSSDSFLLD 74

Query: 63  RSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSI 122
           R SSKK+LYFSLC NPILID+GKKSF+L+K SGKKCYM+SARDL IVW +TPTYW W  +
Sbjct: 75  RFSSKKQLYFSLCDNPILIDDGKKSFALEKWSGKKCYMLSARDLKIVWSDTPTYWRWICL 134

Query: 123 PEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGL 182
           P++RFPEVAELI VCWLEI  +I+   LSP TLYTAY V+K T G++GFEYQP    VGL
Sbjct: 135 PDSRFPEVAELISVCWLEISARINISMLSPSTLYTAYFVFKSTTGAYGFEYQPAEAVVGL 194

Query: 183 VSGESQTRTVYLEEEIGLRQGYH------GLLNRS---SSQASTPK-ENDGYFPKERKDE 232
           V  E+    VYL+ E G R+         GLLNR      QAS    E+D  +PKER D 
Sbjct: 195 VGSETCKHNVYLDAERGRRRRSQIVRRRIGLLNRGRIFGLQASLRNGESDCKYPKERGDG 254

Query: 233 WLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKL 279
           WLEIELG+FF ++  EDGELE+SVLE+  GHWK GL +QGIEIRPK+
Sbjct: 255 WLEIELGEFFKKKG-EDGELELSVLEVKGGHWKGGLAVQGIEIRPKV 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141999|ref|XP_002324348.1| predicted protein [Populus trichocarpa] gi|222865782|gb|EEF02913.1| predicted protein [Populus trichocarpa]

 Score =  336 bits (862), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 177/293 (60%), Positives = 215/293 (73%), Gaps = 13/293 (4%)

Query: 1   MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSS 60
           +++LPE CIAN +SFT PRDACRLS V ++FK A ESD VWE FLP DY +++S S +SS
Sbjct: 13  LDVLPEACIANVLSFTCPRDACRLSMVCSLFKAAEESDFVWERFLPRDYQSIISKSDASS 72

Query: 61  SLRSSS--KKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWS 118
            L +S+  KK LY  LC  P++I+ GKKS SL+K+SGKKCYM+SARDL+IVWG+TPTYW 
Sbjct: 73  MLLASASSKKHLYLMLCEKPLIIEGGKKSISLEKKSGKKCYMLSARDLIIVWGDTPTYWK 132

Query: 119 WTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVV 178
           W S P +RF EVAELI VCWLEIRGKI+   LSP TLYTAYLV++ T G +G +YQPV V
Sbjct: 133 WNSDPSSRFGEVAELISVCWLEIRGKINATMLSPATLYTAYLVFRPTRGLYGLDYQPVEV 192

Query: 179 SVGLVSGESQTRTVYLEEEIGLRQGYH------GLLNRS---SSQASTP-KENDGYFPKE 228
            VGLV  E   R VYL+ E G RQ YH      GL NR       AS P +EN+G +PK+
Sbjct: 193 GVGLVGSECGMRNVYLDSERGRRQQYHFVSRRIGLFNRCRIVGMPASEPARENNGQYPKK 252

Query: 229 RKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLGK 281
           R+D WLEIELG+FF +E  ED ELEMSV E+  G WK GL+++GIEIRPK GK
Sbjct: 253 REDGWLEIELGEFFCKEG-EDRELEMSVQEVKGGDWKGGLIVEGIEIRPKEGK 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089414|ref|XP_002308717.1| f-box family protein [Populus trichocarpa] gi|222854693|gb|EEE92240.1| f-box family protein [Populus trichocarpa]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 176/291 (60%), Positives = 205/291 (70%), Gaps = 12/291 (4%)

Query: 1   MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDY-STLLSSSSSS 59
           + +LPEGCIAN ++FT PRDACRLS VS++FK A ESDAVWE FLP DY S + +S S  
Sbjct: 3   LNVLPEGCIANVLAFTGPRDACRLSIVSSLFKSAGESDAVWERFLPRDYQSIIFTSDSYV 62

Query: 60  SSLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSW 119
                SSKKELY  LC  PI+ID+GKKSFSL K+SGKKCYM+SARDL+IVWG+TPTYW W
Sbjct: 63  LLSSLSSKKELYLRLCEKPIIIDDGKKSFSLVKKSGKKCYMLSARDLMIVWGDTPTYWRW 122

Query: 120 TSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVS 179
            S   +RF EVAELI VCWLEI GKI+   LSP TLY AYLV+K   G++G +YQPV V 
Sbjct: 123 NSDSSSRFGEVAELIGVCWLEICGKINATMLSPATLYAAYLVFKPKEGAYGLDYQPVEVG 182

Query: 180 VGLVSGESQTRTVYLEEEIGLRQGYH------GLLNRS---SSQASTP-KENDGYFPKER 229
           VGLV  E+  R VYL+ + G    YH      GL NRS     Q   P  EN+G  PKER
Sbjct: 183 VGLVGSENGKRNVYLDSQRGRAHRYHLVRRRIGLHNRSRIVGMQEPVPASENNGQHPKER 242

Query: 230 KDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLG 280
            D WLEIELG+FF +E  EDGELEM V E+  G WK GL ++GIEIRPK G
Sbjct: 243 GDGWLEIELGEFFCKEG-EDGELEMRVQEVKSGDWKGGLTVEGIEIRPKEG 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543080|ref|XP_002512603.1| conserved hypothetical protein [Ricinus communis] gi|223548564|gb|EEF50055.1| conserved hypothetical protein [Ricinus communis]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 182/289 (62%), Positives = 216/289 (74%), Gaps = 13/289 (4%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLR 63
           LPEGC+AN +SFT P D  RLS VS  FK A+ESDAVWESFLP DY +++SSSSSS  L 
Sbjct: 17  LPEGCVANVLSFTGPADVGRLSMVSFTFKSASESDAVWESFLPNDYHSIISSSSSSFLLS 76

Query: 64  SSS-KKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSI 122
           SSS KK+LY  LC +PILID+GKKSFSLDK SGKKCYM+SARDL+IVWG+TP YW WTS 
Sbjct: 77  SSSSKKDLYLRLCDSPILIDDGKKSFSLDKLSGKKCYMLSARDLMIVWGDTPRYWRWTSE 136

Query: 123 PEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGL 182
            ++RF EVAELI VCWLEI GKIS R LSP TLY AY VYK TAG++GF++QPV V+VGL
Sbjct: 137 LKSRFEEVAELIGVCWLEICGKISARMLSPETLYAAYFVYKTTAGAYGFDHQPVEVTVGL 196

Query: 183 VSGESQTRTVYLEEEIGLRQGYH------GLLNRSSS---QASTP--KENDGYFPKERKD 231
              E   R+VYL+ E   +Q Y       GL + S +   QA  P  + NDG  P+ER+D
Sbjct: 197 AGTEGCKRSVYLDAERERQQRYQIVIRRIGLFSHSRALGLQAPVPTRENNDGMHPQERED 256

Query: 232 EWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLG 280
            WLEIELG FFN+ED +DG+LEM VLE+  G WK GL++QGI+IRPK G
Sbjct: 257 GWLEIELGTFFNKED-DDGDLEMKVLEVNGGDWKGGLIVQGIDIRPKPG 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442263|ref|XP_004138901.1| PREDICTED: F-box protein At2g02240-like [Cucumis sativus] gi|449477769|ref|XP_004155117.1| PREDICTED: F-box protein At2g02240-like [Cucumis sativus]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/298 (54%), Positives = 206/298 (69%), Gaps = 25/298 (8%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLR 63
           LPEGC+++ +SFT+P+D CR +SVS+ F+ AA+SDA+W+ FLPPDY+  +S + S     
Sbjct: 23  LPEGCVSHILSFTSPQDVCRSASVSSTFRSAADSDALWDRFLPPDYADEISHALSHLFPP 82

Query: 64  SSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIP 123
            SSKK+LY  LC  P+LI  G KSFSLDK++GKKCYMIS R L IVWG+ P YW W+S P
Sbjct: 83  FSSKKQLYLHLCRFPVLIHGGAKSFSLDKKTGKKCYMISPRQLSIVWGDVPRYWRWSSTP 142

Query: 124 EARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLV 183
           EARF EVAEL+ VCWLEIRGKI T  LSPGTLY+A+LV+K T  S+GF+ QPV V VGL 
Sbjct: 143 EARFGEVAELVSVCWLEIRGKIETEMLSPGTLYSAHLVFKPTTSSYGFQQQPVEVGVGLT 202

Query: 184 SGESQTRTVYLEEEIGLRQGYHGLLNRS-------------SSQASTPKE---NDG---- 223
             E   RTVYL++     +  H +++R               +Q  TP E   ND     
Sbjct: 203 GTEPVKRTVYLDDVSRDWRQRHPIVHRGFGLFNLGGRRSMIGTQVGTPPEITRNDAPAVD 262

Query: 224 ---YFPKERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278
              + PKER+D WLE++LG+FF++ D  +GELE+SVLE+  GHWK GL+IQGIEIRPK
Sbjct: 263 CGRHIPKEREDRWLEVQLGEFFHDGD--NGELEISVLEVKGGHWKGGLLIQGIEIRPK 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576652|ref|XP_003556444.1| PREDICTED: F-box protein PP2-B1-like [Glycine max]

 Score =  309 bits (791), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 167/291 (57%), Positives = 206/291 (70%), Gaps = 20/291 (6%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLR 63
           LPEGCIAN +SFT+PRD CRLS +S+ F+ AA+SDAVW  FLP D+ T+LS SSS S   
Sbjct: 12  LPEGCIANILSFTSPRDVCRLSLLSSTFRSAAQSDAVWNKFLPSDFHTILSQSSSLSL-- 69

Query: 64  SSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIP 123
             SKK+L+  LC  P+LID+GKKSF LDK  GKKCYM+SAR+L IVWG+TP YW WTS+P
Sbjct: 70  -PSKKDLFLYLCQKPLLIDDGKKSFQLDKVYGKKCYMLSARNLFIVWGDTPRYWRWTSLP 128

Query: 124 EARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLT-AGSFGFEYQPVVVSVGL 182
           +ARF EVAEL  VCWLEIRG I+T  LSP TLY AYLV+K   +G +GF+YQ V VS+G+
Sbjct: 129 DARFSEVAELRSVCWLEIRGWINTGMLSPETLYGAYLVFKPNPSGFYGFDYQLVEVSIGI 188

Query: 183 VSGESQTRTVYLEEEIGLRQGYH--------GLLNRSS----SQASTPKENDGY---FPK 227
             GE++ R V+L+ E G R  Y         G+ NR+      +A   ++ND      PK
Sbjct: 189 AGGENRKRNVFLDAERGRRLRYQIVPRRAGTGIFNRARFLAPVEAPPVEDNDSLDLQHPK 248

Query: 228 ERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278
           ER DEWLE+ELG+FFN+   ED ELEM V E+  G WK GL++QGIEIRPK
Sbjct: 249 ERADEWLEVELGEFFNDGQ-EDKELEMGVYEIKSGDWKGGLLVQGIEIRPK 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088854|emb|CBI38318.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 151/276 (54%), Positives = 199/276 (72%), Gaps = 15/276 (5%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLR 63
           LPEGCIA+ ++ T+PRD CR+S+V+++F  AAESDA+WE FLP DY  +++ SS SSS R
Sbjct: 23  LPEGCIADVLALTSPRDVCRMSAVASVFLSAAESDALWERFLPADYREIIARSSESSSWR 82

Query: 64  S-SSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSI 122
             SSKKELYF+LC  P+LIDEGKKSF L+K+SGKKCYM+++R+L I+WG+TP YW WTS+
Sbjct: 83  HFSSKKELYFTLCDYPLLIDEGKKSFWLEKRSGKKCYMLASRELTIIWGDTPGYWEWTSL 142

Query: 123 PEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGL 182
           PE+RFPEVA L  VCW EIRGKI+T  LSP T Y AYLV+     S GFE  PV  S+ +
Sbjct: 143 PESRFPEVAYLQAVCWFEIRGKINTCMLSPRTNYAAYLVFH-AGRSHGFEDVPVESSIEI 201

Query: 183 VSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDFF 242
           V  E+ TR +YL               R + + ++   +D  +PK+R+D W EIELG+FF
Sbjct: 202 VGNETTTRVIYLAR------------YRKNEEPTSSIRSDLPYPKKREDSWFEIELGEFF 249

Query: 243 NEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278
            E   ED ELE++++E+  GHWK GL+++GIEIRPK
Sbjct: 250 IEGG-EDTELEITLMEVKAGHWKDGLIVEGIEIRPK 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071814|gb|ACJ84267.1| unknown [Medicago truncatula]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSS--SSS 61
           LPEGCI N +SFTTPRD  RLS VS+ F+ AAESD+VW+ FLP DY +++S S +   +S
Sbjct: 16  LPEGCIENVLSFTTPRDVARLSLVSSTFRSAAESDSVWDKFLPSDYHSIISKSDAEIDNS 75

Query: 62  LRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTS 121
           L    KK+LY +L   P+LI+ GKKSF LDK  GKKCYM+SAR L IVWG+TP YW W  
Sbjct: 76  LSVLPKKDLYVNLTQKPLLIENGKKSFQLDKVDGKKCYMLSARSLFIVWGDTPRYWRWIP 135

Query: 122 IPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLT-AGSFGFEYQPVVVSV 180
            P++RFPE AEL+ VCW EIRG IST  LSP TLY AYLV+K + AG+FGFEYQP   S+
Sbjct: 136 DPDSRFPEAAELVSVCWFEIRGWISTIMLSPKTLYGAYLVFKSSAAGAFGFEYQPCEASI 195

Query: 181 GLVSGESQTRTVYLEEEIGLRQGYH--------GLLNRSSSQASTPKE------NDGYFP 226
            +V G++  R V+L+   G R  Y         G+L R  S    P E      +   +P
Sbjct: 196 DIVGGDTVERNVFLDAGRGRRLRYQIVPRSRTTGILTRLRSPVEAPVEPTESVADLRKYP 255

Query: 227 KERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278
           KER D WLE+ELG+FFNE   +D ++++ V E+  G WK GLV+QGIEIRPK
Sbjct: 256 KERADGWLEMELGEFFNEGG-DDKQVDIGVCEVKGGGWKGGLVVQGIEIRPK 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441181|ref|XP_003590868.1| F-box protein PP2-B1 [Medicago truncatula] gi|355479916|gb|AES61119.1| F-box protein PP2-B1 [Medicago truncatula]

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 155/292 (53%), Positives = 195/292 (66%), Gaps = 18/292 (6%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSS--SSS 61
           LPEGCI N +SFTTPRD  RLS VS+ F+ AAESD+VW+ FLP DY +++S S +   +S
Sbjct: 16  LPEGCIENVLSFTTPRDVARLSLVSSTFRSAAESDSVWDKFLPSDYHSIISKSDAEIDNS 75

Query: 62  LRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTS 121
           L    KK+LY +L   P+LI+ GKKSF LDK  GKKCYM+SAR L IVWG+TP YW W  
Sbjct: 76  LSVLPKKDLYVNLTQKPLLIENGKKSFQLDKVDGKKCYMLSARSLFIVWGDTPRYWRWIP 135

Query: 122 IPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLT-AGSFGFEYQPVVVSV 180
            P++RFPE AEL+ VCW EIRG IST  LSP TLY AYLV+K + AG+FGFEYQP   S+
Sbjct: 136 DPDSRFPEAAELVSVCWFEIRGWISTIMLSPKTLYGAYLVFKSSAAGAFGFEYQPCEASI 195

Query: 181 GLVSGESQTRTVYLEEEIGLRQGYH--------GLLNRSSSQASTPKE------NDGYFP 226
            +  G++  R V+L+   G R  Y         G+L R  S    P E      +   +P
Sbjct: 196 DIAGGDTVERNVFLDAGRGRRLRYQIVPRSRTTGILTRLRSPVEAPVEPTESVADLRKYP 255

Query: 227 KERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278
           KER D WLE+ELG+FFNE   +D ++++ V E+  G WK GLV+QGIEIRPK
Sbjct: 256 KERADGWLEMELGEFFNEGG-DDKQVDIGVCEVKGGGWKGGLVVQGIEIRPK 306

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141993|ref|XP_002324345.1| f-box family protein [Populus trichocarpa] gi|224141995|ref|XP_002324346.1| f-box family protein [Populus trichocarpa] gi|222865779|gb|EEF02910.1| f-box family protein [Populus trichocarpa] gi|222865780|gb|EEF02911.1| f-box family protein [Populus trichocarpa]

 Score =  296 bits (757), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 158/287 (55%), Positives = 198/287 (68%), Gaps = 15/287 (5%)

Query: 4   LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLR 63
           LPEGCIANA+SFT P D  RLS+VS +FK AA SD VWE FLP D  ++LS+S   S L 
Sbjct: 12  LPEGCIANALSFTAPLDVARLSAVSPMFKSAAISDVVWERFLPSDLESVLSTSPDGSLLL 71

Query: 64  SS--SKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTS 121
           +S  SK+ELYFSLC NPIL++ G+KSFSL+K+SGKKCYM+SA DL+I W +TP YW W S
Sbjct: 72  ASVSSKRELYFSLCDNPILVENGRKSFSLEKKSGKKCYMLSAMDLVITWSDTPRYWKWNS 131

Query: 122 IPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVG 181
            P +RFPEVAELI VCWLEIRGKI+T  LSP  LYTA LV+K +  ++G + QPV V++ 
Sbjct: 132 NPASRFPEVAELIKVCWLEIRGKINTCMLSPSILYTANLVFKFSIEAYGLDDQPVEVAMK 191

Query: 182 LVSGESQTRTVYLEEEIGLRQGYH--------GLLNRSSSQASTPKENDGYFPKERKDEW 233
           L   +    +V    E   R+G             N S  ++   +E+DG++PK+R D W
Sbjct: 192 LDGDKICAHSVCWNAE---RRGQQFRTARRPVDFFNFSCRRSIPARESDGHYPKKRGDGW 248

Query: 234 LEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLG 280
           LEIELGDFF  E  EDGELEM V +    +WK GL+++GIEIRPK G
Sbjct: 249 LEIELGDFFCTEG-EDGELEMRVFD-GTNYWKHGLIVEGIEIRPKEG 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.907	0.796	0.481	2.6e-63
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.672	0.562	0.461	1.1e-58
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.900	0.816	0.447	1.4e-57
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.921	0.849	0.435	8.9e-54
TAIR|locus:2011806	284	PP2-B13 "phloem protein 2-B13"	0.967	0.957	0.410	9.5e-50
TAIR|locus:2011791	282	PP2-B14 "phloem protein 2-B14"	0.971	0.968	0.409	2.5e-49
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.975	0.948	0.391	2.6e-47
TAIR|locus:2056271	284	PP2-B5 "phloem protein 2-B5" [	0.590	0.584	0.494	2.6e-45
TAIR|locus:2016349	257	PP2-B11 "phloem protein 2-B11"	0.829	0.906	0.435	7.1e-45
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.900	0.930	0.389	1.2e-44

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 133/276 (48%), Positives = 173/276 (62%)

Query:     2 ELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYXXXXXXXXXXXX 61
             ++LPE CI+N ISFT+PRDAC  +SVS  F+ A  SD VW+ FLPP+Y            
Sbjct:    62 DVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFAS 121

Query:    62 XXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTS 121
                  KKELYF+LCHNP+LI++GKKSF L+K SGK+C M+S+++L I WG++P YW W S
Sbjct:   122 -----KKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWIS 176

Query:   122 IPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPXXXXXX 181
             IPE+RF ++AEL+ VCW EIRGK S R LSPGT Y+AY+V+K      G  + P      
Sbjct:   177 IPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLG 236

Query:   182 XXXXESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDF 241
                 ES  R +Y    IG R    G   R  ++  T        P +R+D W+E ELG+F
Sbjct:   237 LVGQESSKRFIYF---IGPRDR-RG---RRETRDVTK-------PDQREDGWMEAELGEF 282

Query:   242 FNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRP 277
             FNEE  +  E+E SV+E+    WK GL+IQGIE RP
Sbjct:   283 FNEERCD--EIEFSVIEIKSPSWKSGLIIQGIEFRP 316

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
 Identities = 90/195 (46%), Positives = 123/195 (63%)

Query:     2 ELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYXXXXXXXXXXXX 61
             + LPE CI+  IS T+PRDAC ++SVS   K AA+SD VWE FLP +Y            
Sbjct:    33 DALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHLS 92

Query:    62 XXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTS 121
                  KKE++ SL  N +L++ GKKSF ++K SGKKCYM+SA +L I+WG++P YW W +
Sbjct:    93 -----KKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWIT 147

Query:   122 IPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAG-SFGFEYQPXXXXX 180
             +PE++F +VAEL  VCW E+RGKIS   LS GT Y+ Y+V+K   G S+GF+  P     
Sbjct:   148 VPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGV 207

Query:   181 XXXXXESQTRTVYLE 195
                   +  ++VY E
Sbjct:   208 GFVGKVATKKSVYFE 222

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 123/275 (44%), Positives = 163/275 (59%)

Query:     4 LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYXXXXXXXXXXXXXX 63
             LPE CI+N ISFT+PRDAC  +SVS  F+ A  SD+VW+ FLP DY              
Sbjct:    50 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSS-- 107

Query:    64 XXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISAR-DLLIVWGNTPTYWSWTSI 122
                KKELYF++C NP+L+++G KSF L+K++GKKC+M+S +  + I W +TP YW W SI
Sbjct:   108 ---KKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISI 164

Query:   123 PEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPXXXXXXX 182
             PEARF EV EL+ VCW E+RG ++T+ LSPGT Y+AY+V+K   G       P       
Sbjct:   165 PEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVGL 224

Query:   183 XXXESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDFF 242
                ES  R +Y    +G            S Q    +  D   P +RKD W+E ELG FF
Sbjct:   225 VGQESSQRHIYF---VG-----------PSDQRRDRETRDVTRPTKRKDGWMEAELGQFF 270

Query:   243 NEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRP 277
             NE   +   ++ S+LE+   +WK GL+IQGIE RP
Sbjct:   271 NESGCD--VVDTSILEIKTPYWKRGLIIQGIEFRP 303

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 121/278 (43%), Positives = 162/278 (58%)

Query:     4 LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYXXXXXXXXXXXXXX 63
             LPE C++  +SFT+P+DAC L+SVS  F  A +SD VWE F+PP+Y              
Sbjct:    39 LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLS 98

Query:    64 XXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIP 123
                KKELYF+LC   +LID+GKKS  ++K + K+C MISA +L I WGN+P  W W   P
Sbjct:    99 ---KKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDP 155

Query:   124 EARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFE---YQPXXXXX 180
             +ARF  VAEL+ VC  EIRG+I++R +SP T Y+AY+VYK     +GFE    +      
Sbjct:   156 QARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVV 215

Query:   181 XXXXXESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGD 240
                  ES  R +  +E +  +        R     +  K      P+ RKD W+EI++G+
Sbjct:   216 GQDLEESCRRYICFDETMDEQ------FRRRDRGKNLVK------PERRKDGWMEIKIGE 263

Query:   241 FFNEEDV-EDGELEMSVLELACGHWKCGLVIQGIEIRP 277
             FFNE  +  D E+EM  LE    HWK GL+IQGIEIRP
Sbjct:   264 FFNEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRP 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2011806 PP2-B13 "phloem protein 2-B13" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 117/285 (41%), Positives = 165/285 (57%)

Query:     1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYXXXXXXXXXXX 60
             M +LPE C+AN ++FT+P DA   S VS++F+LA +SD VWE FLP  Y           
Sbjct:     1 MMMLPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHH 60

Query:    61 XXXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWT 120
                   KKE+Y  LC + +LID  +K F ++K SGK  Y++SARD+ I + +  +Y SW+
Sbjct:    61 RIFSS-KKEIYRCLCDS-LLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWS 118

Query:   121 SIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPXXXXX 180
             ++ ++RF E AELI    LEI+GKI T  LSP T Y AYL+ K+T G++G +  P     
Sbjct:   119 NVSDSRFSESAELITTDRLEIKGKIQTTVLSPNTKYGAYLIMKVTNGAYGLDLVPAETSV 178

Query:   181 XXXXXESQTRTVYL----EEEIGLRQGYHGLLNRSSSQASTPKE--NDGYF--PKERKDE 232
                  ++   T YL    E++  +++ ++G  NR    A T +    DG    PK R D 
Sbjct:   179 KSKNGQNNKNTTYLCCLDEKKQQMKRLFYG--NREERMAMTVEAVGGDGKRREPKARDDG 236

Query:   233 WLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRP 277
             WLEIELG+F   E  ED E+ MS+ E+     K G+VI GIE+RP
Sbjct:   237 WLEIELGEFVTREG-EDDEVNMSLTEVKGYQLKGGIVIDGIEVRP 280

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2011791 PP2-B14 "phloem protein 2-B14" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 117/286 (40%), Positives = 164/286 (57%)

Query:     1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYXXXXXXXXXXX 60
             M +LPE CIAN ++FT+P DA   S VS++F+LA +SD VWE FLP DY           
Sbjct:     1 MMMLPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHH 60

Query:    61 XXXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWT 120
                   KKE+Y  LC + +LID  +K F ++K SGK  Y++SARD+ I   +  +YWSW+
Sbjct:    61 WNISS-KKEIYRCLCDS-LLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWS 118

Query:   121 SIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPXXXXX 180
             ++ ++RF E AELI    LEI GKI TR LS  T Y AYL+ K+T G++G +  P     
Sbjct:   119 NVSDSRFSESAELIITDRLEIEGKIQTRVLSANTRYGAYLIVKVTKGAYGLDLVPAETSI 178

Query:   181 XXXXXESQTRTVYL----EEEIGLRQGYHGLLNRSSSQASTPKE--NDGYF--PKERKDE 232
                  +      YL    E++  +++ ++G  NR    A T +    DG    PK R D 
Sbjct:   179 KSKNGQISKSATYLCCLDEKKQQMKRLFYG--NREERMAMTVEAVGGDGKRREPKCRDDG 236

Query:   233 WLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278
             W+EIELG+F   E  ED E+ M++ E+     K G++I GIE+RPK
Sbjct:   237 WMEIELGEFETREG-EDDEVNMTLTEVKGYQLKGGILIDGIEVRPK 281

GO:0005634 "nucleus" evidence=ISM;IPI

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IPI

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 110/281 (39%), Positives = 155/281 (55%)

Query:     3 LLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYXXXXXXXXXXXXX 62
             +LPE C+A  +SFTTP D    ++VS++F++A +SD VWE FLP DY             
Sbjct:     2 MLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRI 61

Query:    63 XXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSI 122
                 KKELY  LC + ILID G+K F ++K SGK  Y++S+RDL I W +   YWSW+  
Sbjct:    62 FSS-KKELYRCLCES-ILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPR 119

Query:   123 PEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPXXXXXXX 182
              ++RF E  +LI   WLEI GKI T +LSP T Y AYL+ K+T+ ++G +  P       
Sbjct:   120 SDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKV 179

Query:   183 XXXESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKE---NDGYFPKERKDEWLEIELG 239
                E + ++ YL      +Q    +      Q     E   +    P+ R D W+EIELG
Sbjct:   180 GNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIELG 239

Query:   240 DFF--NEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPK 278
             +F   + E  +D E+ MS+ E+     K G+ I GIE+RPK
Sbjct:   240 EFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 280

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056271 PP2-B5 "phloem protein 2-B5" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 86/174 (49%), Positives = 105/174 (60%)

Query:     4 LPEGCIANAISFT-TPRDACRLSSVSAIFKLAAESDAVWESFLPP-DYXXXXXXXXXXXX 61
             LP+ C+A   SFT TPRDA   + VS  F L   SD+VWE FLPP DY            
Sbjct:    37 LPDDCLAIISSFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPPPDYVSLLPKSRVFSS 96

Query:    62 XXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTS 121
                  KKELYF+LC +P     GK SF LDK SGKKC M+SA+ LLI     P YW W S
Sbjct:    97 -----KKELYFALC-DPFPNHNGKMSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWIS 150

Query:   122 IPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQP 175
             IPE+RF EV EL+ +   +IRG ++TR +SPGT Y+AY+VY  T+   GF+  P
Sbjct:   151 IPESRFDEVPELLNIDSFDIRGVLNTRIISPGTHYSAYIVYTKTSHFNGFQTSP 204

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2016349 PP2-B11 "phloem protein 2-B11" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 111/255 (43%), Positives = 138/255 (54%)

Query:     1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYXXXXXXXXXXX 60
             M  LPE CIA  +S TTP D CRLS+VS+IF+ AA SD VW  FLP D+           
Sbjct:     1 MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFAAPAGLP 60

Query:    61 XXXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWT 120
                   +K+L+FSL  NP+LI+    SFSL+++SG KCYM++AR L IVWG+   YW W 
Sbjct:    61 T-----RKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWI 115

Query:   121 SIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPXXXXX 180
             S+P  RF EVAELI V WLEI GKI+   LS  TLY AY V+K     +GF  QP     
Sbjct:   116 SLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGFR-QPVETSL 174

Query:   181 XXXXXESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGD 240
                  ES T  V     I L Q   G               +G  P  R+D W E+ELG 
Sbjct:   175 VLADTES-TDNVVQPSMISLMQDSGG--------------EEGQSPVLRRDGWYEVELGQ 219

Query:   241 FFNEE-DVEDGELEM 254
             FF    D+ + E+ +
Sbjct:   220 FFKRRGDLGEIEMSL 234

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 106/272 (38%), Positives = 148/272 (54%)

Query:     5 PEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYXXXXXXXXXXXXXXX 64
             PE CI+  ISFT PRDAC  ++VS  F+   +SD +WE FLP DY               
Sbjct:    18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS--- 74

Query:    65 XXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYWSWTSIPE 124
               KKELYFSLC++P+L D+ KKS  L+K SGK+C M+SA +L I+WG+ P YW W  IPE
Sbjct:    75 --KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPE 132

Query:   125 ARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPXXXXXXXXX 184
             +RF +VA+L  VCW EIRG+ +TR LSP T Y+AY+V+K     +GF+            
Sbjct:   133 SRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVVG 192

Query:   185 XESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKEN-DGYFPKERKDEWLEIELGDFFN 243
              E   R +   E I  R+G   ++         PK+  DG+   E  + + +   G   +
Sbjct:   193 QEPSRRLICFSEAI--RRGRRNVVK--------PKQREDGWMEIELGEFFND---GGIMD 239

Query:   244 EEDVEDGELEMSVLELACGHWKCGLVIQGIEI 275
              +++E   LE   L   CG    G+ I+  +I
Sbjct:   240 NDEIEMSALETKQLNRKCGLIIQGIEIRPAKI 271

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3E6P4	FB95_ARATH	No assigned EC number	0.5018	0.9110	0.8	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_XVIII000187 hypothetical protein (278 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
pfam14299	154	pfam14299, PP2, Phloem protein 2	5e-84

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  248 bits (635), Expect = 5e-84
 Identities = 89/184 (48%), Positives = 116/184 (63%), Gaps = 30/184 (16%)

Query: 95  GKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGT 154
           GKKCYM+SAR L I WG+ P YW W  +PE+RF EVAEL+ VCWLEIRGKI+TR LSPGT
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 155 LYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQ 214
            Y+AYLV+KL   ++G++ +PV  SV +  G+   +  Y+                    
Sbjct: 61  TYSAYLVFKLADRAYGWDEKPVEFSVSVPDGQKSRQERYVC------------------- 101

Query: 215 ASTPKENDGYFPKERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIE 274
                      P++R D W+EIE+G+FFNE   EDGE+E S+ E+  GHWK GL++ GIE
Sbjct: 102 ----------LPEKRGDGWMEIEVGEFFNEGG-EDGEVEFSMREVDGGHWKGGLIVDGIE 150

Query: 275 IRPK 278
           IRPK
Sbjct: 151 IRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.79
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.36
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.35
PF06881	109	Elongin_A: RNA polymerase II transcription factor	94.56
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.05
KOG3926	332	consensus F-box proteins [Amino acid transport and	84.91
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	84.48
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	83.49
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	82.6

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=1.5e-66  Score=442.84  Aligned_cols=152  Identities=61%  Similarity=1.174  Sum_probs=142.9

Q ss_pred             CceEEEEecccceeeecCCCCceeeeecCCCCcccceEEeeeeeEEEEEEEeccccCCCceEEEEEEEEecCCcCCCccc
Q 023485           95 GKKCYMISARDLLIVWGNTPTYWSWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQ  174 (281)
Q Consensus        95 G~kCymLsAR~L~ItWgd~~~YW~W~~~p~SrF~EVAeL~~VcWLeI~G~i~t~~LSp~t~Y~aylv~kl~~~~~G~~~~  174 (281)
                      ||||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~   80 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP   80 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CEEEEEEEeCCce--eeEEEeccccccccccccccccCCCCCCCCCCCCCCCCccccCCceEEEEeeeEEeCCCCCCcEE
Q 023485          175 PVVVSVGLVSGES--QTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPKERKDEWLEIELGDFFNEEDVEDGEL  252 (281)
Q Consensus       175 pv~~sv~~~g~~~--~~~~V~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~R~DgW~EielGeF~~~~~~~~~eV  252 (281)
                      ||+++|+++++..  ..+.+++                               |++|+|||||||+|||+|++ +++++|
T Consensus        81 pv~~~v~~~~~~~~~~~~~~~~-------------------------------~~~r~dgW~Eie~GeF~~~~-~~~~ev  128 (154)
T PF14299_consen   81 PVEFSVKVPDGEKYEQERKVCL-------------------------------PKERGDGWMEIELGEFFNEG-GDDGEV  128 (154)
T ss_pred             CEEEEEEeCCCccccceeeEEc-------------------------------CCCCCCCEEEEEcceEEecC-CCCcEE
Confidence            9999999987755  2344443                               55788999999999999998 789999


Q ss_pred             EEEEEEEeCCcccceEEEEEEEEEec
Q 023485          253 EMSVLELACGHWKCGLVIQGIEIRPK  278 (281)
Q Consensus       253 ~fsl~E~~~~~wK~GLiv~GIeIRPk  278 (281)
                      +|+|+|+++++||+||||+|||||||
T Consensus       129 ~f~~~E~~~~~wK~GLiv~GieIRPK  154 (154)
T PF14299_consen  129 EFSMYEVDSGHWKGGLIVEGIEIRPK  154 (154)
T ss_pred             EEEEEEecCCcccCeEEEEEEEEecC
Confidence            99999999999999999999999998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.79  E-value=4.5e-09  Score=71.72  Aligned_cols=45  Identities=27%  Similarity=0.537  Sum_probs=40.5

Q ss_pred             CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCC
Q 023485            1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFL   45 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fl   45 (281)
                      |.+||+|.+..|+++++|.|.+++++|||.|+.++.++.+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            679999999999999999999999999999999999999998764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.36  E-value=1e-07  Score=64.77  Aligned_cols=44  Identities=27%  Similarity=0.545  Sum_probs=38.2

Q ss_pred             CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccC
Q 023485            1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESF   44 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f   44 (281)
                      |.+||++++..|++++++.|.++++.||+.|+.+++++..|..+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            35799999999999999999999999999999999999999764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.35  E-value=5.7e-07  Score=58.51  Aligned_cols=40  Identities=28%  Similarity=0.476  Sum_probs=38.6

Q ss_pred             chhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhcc
Q 023485            4 LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWES   43 (281)
Q Consensus         4 Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~   43 (281)
                      ||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=94.56  E-value=0.025  Score=45.37  Aligned_cols=71  Identities=15%  Similarity=0.295  Sum_probs=57.4

Q ss_pred             CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCccccccccCCCCCCCCCcHHHHHHhhcC
Q 023485            1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLRSSSKKELYFSLCH   76 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~~~i~~~~~~~~~~~~~skkely~~L~~   76 (281)
                      ++++|.+.|.-||...+|....++..-|+.+  +-++|.+|.+|+=.||..-.....   +.+..+-+++|.++.+
T Consensus         4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~---~~~~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK---PKEPESWRELYEKLKK   74 (109)
T ss_pred             cCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc---ccccchHHHHHHHHHH
Confidence            4789999999999999999999999999766  567999999999999975222211   2345689999998864

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.05  E-value=0.041  Score=52.35  Aligned_cols=81  Identities=16%  Similarity=0.185  Sum_probs=56.8

Q ss_pred             CCCchhHHHHHHHhc-----CChHhHHHHhhhcHHHHHhhccchhhccCCCCCccccccccCCC-C-CCCCCcHHHHHHh
Q 023485            1 MELLPEGCIANAISF-----TTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSS-S-SLRSSSKKELYFS   73 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~-----t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~~~i~~~~~~~-~-~~~~~skkely~~   73 (281)
                      |..||++.+-.|+..     ++-++.-++|+||+.|+-+|..|.+|+.+|=.-|..-+-...+- . .--..|-+++|+.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~  186 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE  186 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence            467999998888765     45599999999999999999999999999887664422211110 0 0013577888875


Q ss_pred             hcCCCeeecC
Q 023485           74 LCHNPILIDE   83 (281)
Q Consensus        74 L~~~pvlld~   83 (281)
                      =.  -|.+|+
T Consensus       187 Rp--RvrFdG  194 (366)
T KOG2997|consen  187 RP--RVRFDG  194 (366)
T ss_pred             Cc--ceeecc
Confidence            43  466654

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=84.91  E-value=0.62  Score=43.60  Aligned_cols=49  Identities=18%  Similarity=0.339  Sum_probs=43.0

Q ss_pred             CCCchhHHHHHHHhcCC-hHhHHHHhhhcHHHHHhhccchhhccCCCCCc
Q 023485            1 MELLPEGCIANAISFTT-PRDACRLSSVSAIFKLAAESDAVWESFLPPDY   49 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~-P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~   49 (281)
                      +-|||++|+..||-+++ -+|.--+|.|-.++...++.+-+|.+.+-=.|
T Consensus       202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF  251 (332)
T KOG3926|consen  202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHF  251 (332)
T ss_pred             cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            45899999999999765 89999999999999999999999998776443

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=84.48  E-value=0.28  Score=47.03  Aligned_cols=48  Identities=23%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             CCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCc
Q 023485            2 ELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDY   49 (281)
Q Consensus         2 ~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~   49 (281)
                      +.||.+-+..+++++.++++.+.|+||+.+...++-+..|++++-.++
T Consensus         9 e~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l   56 (386)
T KOG4408|consen    9 EWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL   56 (386)
T ss_pred             hhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence            567888899999999999999999999999999999999999995544

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=83.49  E-value=1  Score=43.96  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=34.0

Q ss_pred             CCchhHHHHHHHhcC-ChHhHHHHhhhcHHHHHhhccc
Q 023485            2 ELLPEGCIANAISFT-TPRDACRLSSVSAIFKLAAESD   38 (281)
Q Consensus         2 ~~Lpe~ci~~ils~t-~P~d~cr~a~vs~~fr~aa~sd   38 (281)
                      .+||+|.+..|..++ +..|..|+++||++.|+|+...
T Consensus         5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~   42 (373)
T PLN03215          5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV   42 (373)
T ss_pred             hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence            479999999999998 7999999999999999998863

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=82.60  E-value=0.89  Score=46.34  Aligned_cols=48  Identities=23%  Similarity=0.298  Sum_probs=42.8

Q ss_pred             CCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCc
Q 023485            2 ELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDY   49 (281)
Q Consensus         2 ~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~   49 (281)
                      ..||-+-.-.||+++++++.|.+++||+.|+..++.|.+|.+.+....
T Consensus       109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~  156 (537)
T KOG0274|consen  109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELI  156 (537)
T ss_pred             hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhc
Confidence            468888888999999999999999999999999999999986666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 41/260 (15%), Positives = 73/260 (28%), Gaps = 82/260 (31%)

Query: 1   MELLPEGCIANAISFTTPRDACRLS--SVSAIFKLAAESDAVWESFLPPDYSTLLSSSSS 58
             LL +    +      PR+    +   +S I +   +  A W+++   +   L +   S
Sbjct: 304 KSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 59  S-SSLRSSSKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIVWGNTPTYW 117
           S + L  +  ++++  L    +                     I    L ++W +     
Sbjct: 362 SLNVLEPAEYRKMFDRLS---VFPPSAH---------------IPTILLSLIWFDVIKS- 402

Query: 118 SWTSIPEARFPEVAELICVCWLEIRGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVV 177
                       V +L     +E + K ST S     + + YL  K+             
Sbjct: 403 ----DVMV---VVNKLHKYSLVEKQPKESTIS-----IPSIYLELKVK------------ 438

Query: 178 VSVGLVSGESQTRTVYLEEEIGLRQ----GYHGLLNRSSSQASTPKENDGYF-------- 225
                           LE E  L +     Y+      S     P   D YF        
Sbjct: 439 ----------------LENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHHL 481

Query: 226 ----PKERKDEWLEIELGDF 241
                 ER   +  + L DF
Sbjct: 482 KNIEHPERMTLFRMVFL-DF 500

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.8
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.53
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.82
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.53
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.82
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.85
1dyo_A	160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	93.09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	92.93
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	87.11

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.80  E-value=4.2e-09  Score=72.41  Aligned_cols=44  Identities=16%  Similarity=0.336  Sum_probs=39.8

Q ss_pred             CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccC
Q 023485            1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESF   44 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f   44 (281)
                      |.+||++++..|+++++|.|.+++++|||.|+.++.++.+|+.+
T Consensus         9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            57899999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.53  E-value=3.6e-08  Score=91.27  Aligned_cols=76  Identities=22%  Similarity=0.356  Sum_probs=60.9

Q ss_pred             CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCc---cccccccCCCC-----CC------CCCc
Q 023485            1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDY---STLLSSSSSSS-----SL------RSSS   66 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~---~~i~~~~~~~~-----~~------~~~s   66 (281)
                      |++||.+++..|+||++|.|+||+|+||+.+|.+|+.+.+|+.||-.|+   .+|-..+.+..     +.      .+..
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~~   84 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFFD   84 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CCC
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccccc
Confidence            3579999999999999999999999999999999999999999998764   44555433210     00      1456


Q ss_pred             HHHHHHhhcC
Q 023485           67 KKELYFSLCH   76 (281)
Q Consensus        67 kkely~~L~~   76 (281)
                      ++.+|.+-|.
T Consensus        85 ~~~~y~~~~p   94 (312)
T 3l2o_B           85 YMAVYRMCCP   94 (312)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHhcCh
Confidence            8999999983

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.94  E-value=3.9e-06  Score=77.58  Aligned_cols=80  Identities=14%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             CCCchhHHHHHHHhcCChHhHH-HHhhhcHHHHHhhccchhhccCCCCCccccccccCCCCCCCCCcHHHHHHhhcCCCe
Q 023485            1 MELLPEGCIANAISFTTPRDAC-RLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLRSSSKKELYFSLCHNPI   79 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~c-r~a~vs~~fr~aa~sd~vW~~flP~d~~~i~~~~~~~~~~~~~skkely~~L~~~pv   79 (281)
                      +..||++.+..||+++.|.+.+ |+++|||.+|..++++.+|++.|...  .+......  +....+-|.+|+.---.-+
T Consensus        51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~--~~~~~~Wk~~y~~~~~gRN  126 (297)
T 2e31_A           51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSA--DEERDHWQQFYFLSKRRRN  126 (297)
T ss_dssp             TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC-------CCSCHHHHHHHHHHCCC
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccccc--CCCCCChhhhheheecccc
Confidence            4689999999999999999999 99999999999999999999887765  11111111  1123568999987544566


Q ss_pred             eecCC
Q 023485           80 LIDEG   84 (281)
Q Consensus        80 lld~g   84 (281)
                      ||.|.
T Consensus       127 LL~NP  131 (297)
T 2e31_A          127 LLRNP  131 (297)
T ss_dssp             CSSCS
T ss_pred             eeecC
Confidence            77553

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.82  E-value=6.8e-06  Score=76.31  Aligned_cols=46  Identities=22%  Similarity=0.463  Sum_probs=43.2

Q ss_pred             CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCC
Q 023485            1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLP   46 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP   46 (281)
                      |..||++++..||+|++|.|.|++|+||+.|+.+++++.+|+.++-
T Consensus        19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            4689999999999999999999999999999999999999997764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.53  E-value=1.6e-05  Score=73.87  Aligned_cols=47  Identities=15%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             CCchhH----HHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCC
Q 023485            2 ELLPEG----CIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPD   48 (281)
Q Consensus         2 ~~Lpe~----ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d   48 (281)
                      ..||++    .+..|++|++|.|.|++|+||+.|+..++.+.+|..++-..
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            469999    99999999999999999999999999999999999876543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.52  E-value=1.9e-05  Score=73.20  Aligned_cols=44  Identities=16%  Similarity=0.232  Sum_probs=41.3

Q ss_pred             CCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhcc-chhhccCC
Q 023485            2 ELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAES-DAVWESFL   45 (281)
Q Consensus         2 ~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~s-d~vW~~fl   45 (281)
                      ..||++.+..|++|++|.|.|++++||+.++.++++ +.+|..++
T Consensus        16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            469999999999999999999999999999999987 89998876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.82  E-value=0.00067  Score=60.77  Aligned_cols=44  Identities=16%  Similarity=0.336  Sum_probs=39.7

Q ss_pred             CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccC
Q 023485            1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESF   44 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f   44 (281)
                      +++||++++..|+++++++|.+++++||+.++.++.+-..|...
T Consensus         9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            57899999999999999999999999999999998777778643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.85  E-value=0.016  Score=55.76  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=29.4

Q ss_pred             CCCchhHHHHHHHhcCC-hHhHHHHhhhcHHHHHh
Q 023485            1 MELLPEGCIANAISFTT-PRDACRLSSVSAIFKLA   34 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~-P~d~cr~a~vs~~fr~a   34 (281)
                      +++||++++..|++|++ ++|++++|+||+.++.+
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            46899999999999999 99999999999999988

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A

Probab=93.09  E-value=2  Score=35.12  Aligned_cols=97  Identities=13%  Similarity=0.170  Sum_probs=58.4

Q ss_pred             cccCCCceEEEEEEEEecCCcCCCcccCEEEEEEEeCCceeeEEEeccccccccccccccccCCCCCCCCCCCCCCCCcc
Q 023485          148 RSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKENDGYFPK  227 (281)
Q Consensus       148 ~~LSp~t~Y~aylv~kl~~~~~G~~~~pv~~sv~~~g~~~~~~~V~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~  227 (281)
                      ..|.||++|.+..-+|+.+..   ....+.+++...+.....+...+...                             .
T Consensus        63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~~y~~i~~~-----------------------------~  110 (160)
T 1dyo_A           63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQRYDTIDMK-----------------------------T  110 (160)
T ss_dssp             TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCEEEEEEEEE-----------------------------E
T ss_pred             hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCEEEEEEeeE-----------------------------E
Confidence            468999999999999997732   22334444444232222222222210                             1


Q ss_pred             ccCCceEEEEeeeEEeCCCCCCcEEEEEEEEEeCCcccceEEEEEEEEEecCCC
Q 023485          228 ERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLGK  281 (281)
Q Consensus       228 ~R~DgW~EielGeF~~~~~~~~~eV~fsl~E~~~~~wK~GLiv~GIeIRPk~~~  281 (281)
                      ...++|.+++-|.|.... . ...+.|-+ |.  ..-..=+.|+.|.|.|...|
T Consensus       111 ~~~~~W~~L~G~~ft~~~-~-~~~~~lyv-e~--~~~~~d~yiDdv~i~~~g~~  159 (160)
T 1dyo_A          111 VGPNQWVHLYNPQYRIPS-D-ATDMYVYV-ET--ADDTINFYIDEAIGAVAGTV  159 (160)
T ss_dssp             ECSSCCEEEEEEEEECCT-T-CEEEEEEE-EE--SSCCCCEEEEEEEEEETTCC
T ss_pred             EcCCccEEEECcEEEeCC-C-CCEEEEEE-EC--CCCCccEEEEEEEEEeCccc
Confidence            125789999988999865 3 22444433 33  23455589999999998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=92.93  E-value=0.058  Score=51.78  Aligned_cols=33  Identities=15%  Similarity=0.197  Sum_probs=31.2

Q ss_pred             CchhHHHHHHHhcC-ChHhHHHHhhhcHHHHHhh
Q 023485            3 LLPEGCIANAISFT-TPRDACRLSSVSAIFKLAA   35 (281)
Q Consensus         3 ~Lpe~ci~~ils~t-~P~d~cr~a~vs~~fr~aa   35 (281)
                      +||++|+.+|++|+ +++|+++++.||+.|+.+.
T Consensus        15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            69999999999999 8999999999999999873

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=87.11  E-value=0.2  Score=38.62  Aligned_cols=64  Identities=19%  Similarity=0.373  Sum_probs=40.1

Q ss_pred             chhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCccccccccCCCCCCCCCcHHHHHHhhcC
Q 023485            4 LPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLSSSSSSSSLRSSSKKELYFSLCH   76 (281)
Q Consensus         4 Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~~~i~~~~~~~~~~~~~skkely~~L~~   76 (281)
                      .|-+.+.-||-..||....++-.-|+.+  +-++|-+|..|+-.||..--       +....|-+++|++|.+
T Consensus        13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-------p~e~esWRelY~rl~~   76 (97)
T 4hfx_A           13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-------PEEYESWREMYLRLQD   76 (97)
T ss_dssp             -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-------CCSSSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-------CCCCCCHHHHHHHHHH
Confidence            5778888899999999999999999966  67899999999999998422       2345799999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.99
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.95
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.29
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.14
d1h6ya_	157	Xylan-binding domain {Clostridium thermocellum [Ta	92.51

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.9e-10  Score=74.40  Aligned_cols=41  Identities=17%  Similarity=0.319  Sum_probs=40.0

Q ss_pred             CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhh
Q 023485            1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVW   41 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW   41 (281)
                      |+.||++++..|+++++|.|.||+++|||.|+.+++++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            67899999999999999999999999999999999999999

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.9e-10  Score=85.48  Aligned_cols=74  Identities=18%  Similarity=0.266  Sum_probs=54.7

Q ss_pred             CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCCCcccccc----ccCCCCCCCCCcHHHHHHhh
Q 023485            1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPPDYSTLLS----SSSSSSSLRSSSKKELYFSL   74 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~d~~~i~~----~~~~~~~~~~~skkely~~L   74 (281)
                      |..||+|++..|+++++|.|+|++|+||+.|+.++.+|.+|+..+-.++...-.    ...........+-|++|.+.
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~~   96 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ   96 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHHHH
Confidence            568999999999999999999999999999999999999998776544321111    11111112235689999865

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=6.2e-08  Score=73.17  Aligned_cols=44  Identities=14%  Similarity=0.225  Sum_probs=39.3

Q ss_pred             CCCchhHHHHHHHhcCChHhHHHHhhhcHHHHHhhccc-hhhccC
Q 023485            1 MELLPEGCIANAISFTTPRDACRLSSVSAIFKLAAESD-AVWESF   44 (281)
Q Consensus         1 ~~~Lpe~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd-~vW~~f   44 (281)
                      |.+||++.+..|+++++|.|.|++|+||+.++..+++| .+|++.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            35799999999999999999999999999999887655 799875

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.9e-07  Score=72.27  Aligned_cols=45  Identities=16%  Similarity=0.393  Sum_probs=41.1

Q ss_pred             Cch----hHHHHHHHhcCChHhHHHHhhhcHHHHHhhccchhhccCCCC
Q 023485            3 LLP----EGCIANAISFTTPRDACRLSSVSAIFKLAAESDAVWESFLPP   47 (281)
Q Consensus         3 ~Lp----e~ci~~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~flP~   47 (281)
                      .||    ++.+..|+||++|.|.|++|+||+.|+..++++.+|.+++-.
T Consensus        13 ~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          13 ALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             HTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            466    499999999999999999999999999999999999987644

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM22
domain: Xylan-binding domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=92.51  E-value=1.4  Score=32.50  Aligned_cols=102  Identities=12%  Similarity=0.162  Sum_probs=59.0

Q ss_pred             EEEEeccccCCCceEEEEEEEEecCCcCCCcccCEEEEEEEeCCceeeEEEeccccccccccccccccCCCCCCCCCCCC
Q 023485          142 RGKISTRSLSPGTLYTAYLVYKLTAGSFGFEYQPVVVSVGLVSGESQTRTVYLEEEIGLRQGYHGLLNRSSSQASTPKEN  221 (281)
Q Consensus       142 ~G~i~t~~LSp~t~Y~aylv~kl~~~~~G~~~~pv~~sv~~~g~~~~~~~V~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (281)
                      .-.+....|.||++|.+.+-+|+.+..-+   ..+.+.+...++........+..                         
T Consensus        54 ~~~~~~~~l~~g~tY~~s~~vk~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------------------------  105 (157)
T d1h6ya_          54 QRALNPRTFVPGNTYCFSVVASFIEGASS---TTFCMKLQYVDGSGTQRYDTIDM-------------------------  105 (157)
T ss_dssp             EEECCTTTSCTTCEEEEEEEEECCSSSSC---EEEEEEEEEECTTSCEEEEEEEE-------------------------
T ss_pred             eEEecceeccCCCEEEEEEEEEeCCCCcc---eeEEEEEEEecCCCceeEEEeeE-------------------------
Confidence            33344456899999999999998764322   22344444433322222211111                         


Q ss_pred             CCCCccccCCceEEEEeeeEEeCCCCCCcEEEEEEEEEeCCcccceEEEEEEEEEecCC
Q 023485          222 DGYFPKERKDEWLEIELGDFFNEEDVEDGELEMSVLELACGHWKCGLVIQGIEIRPKLG  280 (281)
Q Consensus       222 ~~~~P~~R~DgW~EielGeF~~~~~~~~~eV~fsl~E~~~~~wK~GLiv~GIeIRPk~~  280 (281)
                          .....++|.++..++|.... + ...+.|-+ +  +..-..=+.|+-+.+.|+++
T Consensus       106 ----~~~~~~~W~~~~~~~~~~~~-~-~~~~~l~~-~--~~~~~~~~yiDDv~~~~~~~  155 (157)
T d1h6ya_         106 ----KTVGPNQWVHLYNPQYRIPS-D-ATDMYVYV-A--TADDTINFYIDEAIGAVAGT  155 (157)
T ss_dssp             ----EEECTTCCEEEEEEEEECCT-T-CEEEEEEE-E--ESSCCCCEEEEEEEEEETTC
T ss_pred             ----EEeccCccEEEEEEEEECCC-C-CcEEEEEE-E--CCCCCceEEEeeEEEecccc
Confidence                11124789999889998765 2 22455432 2  22222338999999999864