Citrus Sinensis ID: 023489

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MEILAIHLQPLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHccEEEEcccccEEEEcccccccccccccccccHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHHHHHccccccccccccEEEEcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHcccEEEEcccccEEEEcccccccccccccccEEEEEEEEcccEEcc
Coil and Loop (DISEMBL)
MEILAIHLQPLLLKSFaercrprkcghqmcglsqtrSVRQDLIMQNIVNDKAINMFEKIVKFHVIShhklrsscssssisplhyLNLEQLTKALTSLYNLyeanrsskpihekeaEFRSFYVLLHldsngqpvgeSLSLWFrhvpspiiksKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCcihnccyklhpyplghlskVLMMEESDVELFCNAYGLQTCIDevgnkllptkqttfcrpkgglqnysflgFQQLGRQIEL
Flexible Loop (DISEMBL)
MEILAIHLQPLLLKSFAERCRPRKCGHqmcglsqtrsvrqDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFcrpkgglqnysflgfqqlgrqiel
Low Complexity Region (SEG)
MEILAIHLQPLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRsscssssisPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL
Disordered region (IsUnstruct)
**ILAIHLQPLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEAN*********EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQL******
Disordered Region (DISOPRED)
MEILAIHLQPLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLP*****************FL**QQLGR****
Disordered Region (DISEMBL)
MEILAIHLQPLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISH***********ISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL
Disordered Region (DISPRO)
MEILAIHLQPLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEILAIHLQPLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q9WUU9	1971	80 kDa MCM3-associated pr	yes	no	0.761	0.108	0.275	4e-13
O60318	1980	80 kDa MCM3-associated pr	yes	no	0.761	0.108	0.266	7e-12
Q9U3V9	1370	Protein xmas-2 OS=Drosoph	yes	no	0.758	0.155	0.286	2e-10
Q9USI4	458	SAC3 family protein 2 OS=	yes	no	0.775	0.475	0.280	4e-09
O74889	1024	SAC3 family protein 1 OS=	no	no	0.711	0.195	0.271	3e-08
P46674	1301	Nuclear mRNA export prote	yes	no	0.697	0.150	0.263	1e-06

>sp|Q9WUU9|MCM3A_MOUSE 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 22/236 (9%)

Query: 33  SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 92
           ++TR +R+D+  Q++ +   +++ EK  +FH+   H +   C     S    +N E +TK
Sbjct: 718 NRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFM---CEEPMSSFDAKINNENMTK 774

Query: 93  ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK 152
            L SL  +Y+  R+       EAEF+ + VLL+L+      G+ L    +  P  +  S 
Sbjct: 775 CLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNK-----GDILREVQQFHPD-VRNSP 828

Query: 153 EMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 212
           E+ FA QA       N+ RF   V + ASYL  C++  Y +++R  AL  + N  Y +  
Sbjct: 829 EVNFAVQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFNQIRKDALRAL-NVAYTVST 886

Query: 213 -----YPLGHLSKVLMMEES-DVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 262
                +PL  + ++L+  +S +   F N +GL      V +  +   ++ F  P+G
Sbjct: 887 QRSTVFPLDGVVRMLLFRDSEEATNFLNYHGLT-----VADGCVELNRSAFLEPEG 937

May be involved in the nuclear localization pathway of MCM3.
Mus musculus (taxid: 10090)

>sp|O60318|MCM3A_HUMAN 80 kDa MCM3-associated protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 22/236 (9%)

Query: 33  SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 92
           ++TR +R+D+  Q++ +   +++ EK  +FH+   H +   C     S    +N E +TK
Sbjct: 725 NRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFM---CEEPMSSFDAKINNENMTK 781

Query: 93  ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK 152
            L SL  +Y+  R+       EAEF+ + VLL L+      G+ L    +  P+ +  S 
Sbjct: 782 CLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNK-----GDILREVQQFHPA-VRNSS 835

Query: 153 EMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 212
           E+ FA QA       N+ RF   V + ASYL  C++  Y  ++R  AL  + N  Y +  
Sbjct: 836 EVKFAVQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFSQIRKDALRAL-NFAYTVST 893

Query: 213 -----YPLGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 262
                +PL  + ++L+  +  +   F   +GL      V +  +   ++ F  P+G
Sbjct: 894 QRSTIFPLDGVVRMLLFRDCEEATDFLTCHGLT-----VSDGCVELNRSAFLEPEG 944

May be involved in the nuclear localization pathway of MCM3.

Homo sapiens (taxid: 9606)

>sp|Q9U3V9|XMAS2_DROME Protein xmas-2 OS=Drosophila melanogaster GN=xmas-2 PE=1 SV=3

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 31/244 (12%)

Query: 33  SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 92
            +TRS+R+++  Q + +  A+ + E+  +FH+    +L  +  S   S +   N E LTK
Sbjct: 296 DRTRSIRKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPSVFDSKI---NAENLTK 352

Query: 93  ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-DSNGQPVGESLSLW-FRHVPSPIIK 150
            L +L  +Y   R       KEAEFR + VLL+L D+N         LW    +P+ +  
Sbjct: 353 CLQTLKYMYHDLRIKGVPCPKEAEFRGYIVLLNLADAN--------FLWDIGQLPAELQS 404

Query: 151 SKEMWFARQALRYF---QMGNYRRFLSTVA-AEASYLQYCIIEPYIDEVRSLALCCIHNC 206
             E+   RQA++++   Q  N+ RF   +A  + SYL  CI+  Y   +R L L  +   
Sbjct: 405 CPEV---RQAIQFYLALQDTNFVRFFQLLADKDTSYLSACILVNYFTRLRVLGLHRLIQA 461

Query: 207 CY-----KLHPYPLGHLSKVL-MMEESDVELFCNAYGLQTCIDEVGNKLLP---TKQTTF 257
                  ++   PL +++++L    E +   F   YGLQ  I+E G  +L    T +T +
Sbjct: 462 YRSPRKDEVSSLPLSYIAELLSFASEQEAADFVQHYGLQ--INEAGRVVLSRMHTVETEY 519

Query: 258 CRPK 261
             P+
Sbjct: 520 KLPR 523

Required for spermatogenesis, oogenesis and embryogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q9USI4|SAC32_SCHPO SAC3 family protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC70.06 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 113/257 (43%), Gaps = 39/257 (15%)

Query: 34  QTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKA 93
           +TR+VRQD  +Q+  +  ++   E I +FH+IS H+L  + + S         +EQL+K+
Sbjct: 161 RTRAVRQDFSVQSSFSQDSVYCHELIARFHIISLHELAHTPNFS-----RQQEIEQLSKS 215

Query: 94  LTSLYN---LYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQP-VGESLSLWFRHV-PSPI 148
           +  LY    LY+     K     EAEFR++ VLL L   G P VG     W   V   PI
Sbjct: 216 MEILYTLGQLYDYMHLRKEHCTHEAEFRAYMVLLSL---GDPSVGLDTLSWPDFVFKKPI 272

Query: 149 IKS--KEMWFARQALRYFQMGN------------------YRRFLSTVAA-EASYLQYCI 187
           +K+  K    A++        N                  Y RF    ++   SYL  C+
Sbjct: 273 VKTSLKLYSLAQRNNHTITTSNSISLSLVSSFNTEATSNLYTRFFKIASSFRVSYLMGCL 332

Query: 188 IEPYIDEVRSLALCCIHNCCYKLHP-YPLGHLSKVLMMEESDVELF--CNAYGLQT-CID 243
           ++ ++  +R+ AL  +  C    H   P   L K+L     D EL   C  +GL+   I 
Sbjct: 333 LDLFVPSIRTGALKAMKKCYLSAHSNIPFKDLMKILAATSED-ELVQCCKMHGLKIEYIG 391

Query: 244 EVGNKLLPTKQTTFCRP 260
           E  + ++  ++T    P
Sbjct: 392 EQPSAVVLNRKTVITEP 408

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O74889|SAC31_SCHPO SAC3 family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC576.05 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 32/232 (13%)

Query: 33  SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK 92
            +TRS+RQD  +QN  +  A+   E+I ++H++  H+L   C     S      +EQL K
Sbjct: 195 DRTRSIRQDFTLQNCRDLDAVACHERIARYHILCIHQL---CEKKQFSAQQ--EVEQLRK 249

Query: 93  A-LTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
             L SL   Y+  R  K     E EFRS+ ++ HL  +   V +S  L     P  I   
Sbjct: 250 GILQSLCEFYDDLRKVKIRCPNEPEFRSYAIITHL-RDPDVVRQSQIL-----PIEIFDD 303

Query: 152 KEMWFARQALRYFQMGN-----------------YRRFLSTVAAEA-SYLQYCIIEPYID 193
           + +  A +     Q  N                 Y RF   V + A +YL  C++E +  
Sbjct: 304 QRVQLALRLSALAQKNNERVGHILPRNTEACPNLYTRFFKLVQSPAVTYLMACLLESHFM 363

Query: 194 EVRSLALCCIHNCCYKLHP-YPLGHLSKVLMMEESD-VELFCNAYGLQTCID 243
            +R  AL  +       H  +P G L ++L  +  +    F   YGL+   D
Sbjct: 364 SIRKGALKAMRKAFMSAHANFPCGDLKRILHFDTVEQAASFSRYYGLEVSDD 415

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P46674|SAC3_YEAST Nuclear mRNA export protein SAC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAC3 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 24/220 (10%)

Query: 36  RSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALT 95
           RS+RQD   QN    +A++  E+IV+ H++  H +  S    S+       LEQL K+L 
Sbjct: 288 RSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVEFSLQQ----ELEQLHKSLI 343

Query: 96  SLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-----DSNGQPVGE--------SLSLWFR 142
           +L  +Y+  RSS      EAEFR++ +L  +     D N Q + +         ++L FR
Sbjct: 344 TLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHIFQDKLVQMALCFR 403

Query: 143 HVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA-SYLQYCIIEPYIDEVRSLALC 201
            V S    ++  +   +    F    Y RF   + + +   L    ++ ++ ++R  AL 
Sbjct: 404 RVISNSAYTERGFVKTENCLNF----YARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALR 459

Query: 202 CIHNCCYKLH-PYPLGHLSKVLMMEE-SDVELFCNAYGLQ 239
            + +   K H P P  +L  +L+     ++  FCN Y ++
Sbjct: 460 ALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIE 499

Component of the SAC3-THP1 complex, which functions in transcription-coupled mRNA export from the nucleus to the cytoplasm. SAC3-THP1 functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket), by association with components of the nuclear mRNA export machinery (MEX67-MTR2 and SUB2) in the nucleoplasm and the nucleoporin NUP1 at the nuclear basket.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
224057204	357	predicted protein [Populus trichocarpa]	0.868	0.683	0.692	1e-94
255569219	440	leng8 protein, putative [Ricinus communi	0.875	0.559	0.658	2e-91
357515593	403	80 kDa MCM3-associated protein [Medicago	0.875	0.610	0.662	2e-88
388497576	403	unknown [Medicago truncatula]	0.875	0.610	0.650	3e-86
356548802	405	PREDICTED: 80 kDa MCM3-associated protei	0.875	0.607	0.634	2e-85
449458706	427	PREDICTED: SAC3 family protein 1-like [C	0.850	0.559	0.644	2e-83
296084674	421	unnamed protein product [Vitis vinifera]	0.868	0.579	0.635	7e-83
225449759	407	PREDICTED: SAC3 family protein 1-like [V	0.868	0.599	0.635	8e-83
359494990	407	PREDICTED: LOW QUALITY PROTEIN: SAC3 fam	0.868	0.599	0.635	1e-82
298205116	424	unnamed protein product [Vitis vinifera]	0.868	0.575	0.635	2e-82

>gi|224057204|ref|XP_002299171.1| predicted protein [Populus trichocarpa] gi|222846429|gb|EEE83976.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 169/244 (69%), Positives = 202/244 (82%)

Query: 32  LSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91
             +TRS+RQDL MQNIV+DK+I M+EK+VKFHVISH KL+   SSS IS +HYLN+EQLT
Sbjct: 113 FDRTRSIRQDLSMQNIVDDKSIYMYEKMVKFHVISHLKLQRCRSSSDISSVHYLNMEQLT 172

Query: 92  KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
           KALTSLYNLY+ANR S  ++  EAEFRS YVLLHLDSN QP+GESLSLWFR V  PII+S
Sbjct: 173 KALTSLYNLYDANRDSGTVYGNEAEFRSLYVLLHLDSNTQPMGESLSLWFRFVLHPIIRS 232

Query: 152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
           KEM FAR  LR++QMGNY RF ST++AEASYLQYCI+E YI++VR+L+L  I+N  YKLH
Sbjct: 233 KEMCFARSVLRFYQMGNYMRFFSTISAEASYLQYCILERYINKVRALSLSYINNAGYKLH 292

Query: 212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLG 271
           PYPL HLSK+L M+ESD+E+ CNA GL+TC D++GNKLLPTKQTTFC PK G Q+Y F G
Sbjct: 293 PYPLVHLSKLLKMKESDLEVLCNACGLETCADDMGNKLLPTKQTTFCCPKEGFQSYIFTG 352

Query: 272 FQQL 275
            +Q 
Sbjct: 353 LEQF 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569219|ref|XP_002525578.1| leng8 protein, putative [Ricinus communis] gi|223535157|gb|EEF36837.1| leng8 protein, putative [Ricinus communis]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 162/246 (65%), Positives = 198/246 (80%)

Query: 32  LSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91
             +TRS+RQDL MQNIVNDKAI M+EK+VKFHV SHH+L+   S   IS +HYLN+EQL 
Sbjct: 195 FDRTRSIRQDLSMQNIVNDKAIYMYEKMVKFHVESHHRLQHGGSGEHISSVHYLNMEQLI 254

Query: 92  KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
           KALTSLY LY+AN++   I+E E+EFRS YVLLHLDS  QP+GESLSLWF  +P PII+S
Sbjct: 255 KALTSLYKLYDANQNPNCIYENESEFRSLYVLLHLDSRNQPMGESLSLWFSRLPHPIIQS 314

Query: 152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
           KEM F+R  LR F+MGNY+RF  TVAAEAS+LQYCIIE Y +E+R+ +L CI+N  YKLH
Sbjct: 315 KEMCFSRSVLRAFRMGNYKRFFYTVAAEASHLQYCIIERYFNEIRAQSLSCINNAGYKLH 374

Query: 212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLG 271
           PYPL HLS +L+M+ES++ELFCNA GL+T  DE+GNKLLPTKQTTFC PKGG Q+++F  
Sbjct: 375 PYPLAHLSNLLIMKESNLELFCNACGLKTYTDEMGNKLLPTKQTTFCIPKGGFQSFNFTD 434

Query: 272 FQQLGR 277
            +Q  R
Sbjct: 435 LEQFDR 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515593|ref|XP_003628085.1| 80 kDa MCM3-associated protein [Medicago truncatula] gi|355522107|gb|AET02561.1| 80 kDa MCM3-associated protein [Medicago truncatula]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 163/246 (66%), Positives = 192/246 (78%)

Query: 32  LSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91
             +TRS+RQDL MQNIVN KAI M+E +VKFHVISHHKL  S    +I+  H+LN+EQLT
Sbjct: 158 FDRTRSIRQDLTMQNIVNKKAIYMYEGMVKFHVISHHKLWGSMGDPNIASTHHLNMEQLT 217

Query: 92  KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
           K L+SL+NLYEANR+S  +HE EAEF S YVLL+L S+ +P+GE LSLWF HV + I+KS
Sbjct: 218 KTLSSLFNLYEANRNSNDVHENEAEFHSLYVLLNLGSHSKPMGEPLSLWFSHVSTSILKS 277

Query: 152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
           KEM FAR+ +R F+MGNY  F  TVAAEASYLQYCI+EPYI+EVRSLAL  I+   YKLH
Sbjct: 278 KEMRFARRIVRSFRMGNYIDFFHTVAAEASYLQYCIMEPYINEVRSLALSYINFGGYKLH 337

Query: 212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLG 271
           PYPL  LSK LM+EESD+E FC++ GL+TC DE GNKLL TKQTTF  PKGG Q YSFLG
Sbjct: 338 PYPLFKLSKHLMIEESDLESFCHSCGLETCTDESGNKLLHTKQTTFSHPKGGFQKYSFLG 397

Query: 272 FQQLGR 277
            Q   R
Sbjct: 398 LQDYER 403

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497576|gb|AFK36854.1| unknown [Medicago truncatula]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 160/246 (65%), Positives = 188/246 (76%)

Query: 32  LSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91
             +TRS+RQDL MQN VN KAI M+E +VKFHVISHHKL  S    +I+  H+LN+EQLT
Sbjct: 158 FDRTRSIRQDLTMQNTVNKKAIYMYEGMVKFHVISHHKLWGSMGDPNIASTHHLNMEQLT 217

Query: 92  KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
           K L+SL+NLYEANR+S  +HE EAEF S YVLL+L S+  P+GE LSLWF HV + I+KS
Sbjct: 218 KTLSSLFNLYEANRNSNDVHENEAEFHSLYVLLNLGSHSTPMGEPLSLWFSHVSTSILKS 277

Query: 152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
           KEM FAR+ +R F+MGNY  F  TVAAEA YLQYCI+EPYI+EVRSLAL  I+   YKLH
Sbjct: 278 KEMRFARRIVRSFRMGNYIDFFHTVAAEAPYLQYCIMEPYINEVRSLALSYINFGGYKLH 337

Query: 212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLG 271
           PYPL  LSK LM+EESD+E FC++ GL+TC DE GNKLL TKQTTF  PK G Q YSFLG
Sbjct: 338 PYPLFKLSKHLMIEESDLESFCHSCGLETCTDESGNKLLHTKQTTFSHPKSGFQKYSFLG 397

Query: 272 FQQLGR 277
            Q   R
Sbjct: 398 LQDYER 403

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548802|ref|XP_003542788.1| PREDICTED: 80 kDa MCM3-associated protein-like [Glycine max]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/246 (63%), Positives = 191/246 (77%)

Query: 32  LSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91
             +TRS+RQD+ MQNIVN KAI M+E +VKFHV+SH+KL  S S  + + LH+LN+EQLT
Sbjct: 160 FDRTRSIRQDITMQNIVNKKAIYMYEGMVKFHVVSHYKLWCSMSDPNTASLHHLNMEQLT 219

Query: 92  KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
           K L SL+NLYEAN++S  +HE EAEF S YVLLHL S  QP+GE LSLWF+ V +P++KS
Sbjct: 220 KTLASLFNLYEANQNSNHVHENEAEFHSLYVLLHLGSYSQPMGEPLSLWFQRVSTPVLKS 279

Query: 152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
           KEM FAR+ LR F++GNY+ F  T AA+ASYLQ+CI+ PYI+EVR LAL CI+   YKLH
Sbjct: 280 KEMCFARRILRSFRLGNYKDFFCTAAAQASYLQFCIMMPYINEVRVLALSCINFGGYKLH 339

Query: 212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLG 271
           PYPL  LSK+L ++ESD+E FCN  GL+T  DE GNKLLPTKQTTF  PKGG Q YSFLG
Sbjct: 340 PYPLLDLSKLLFIKESDLESFCNHCGLETGTDESGNKLLPTKQTTFSHPKGGFQRYSFLG 399

Query: 272 FQQLGR 277
            Q+  R
Sbjct: 400 LQEYER 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458706|ref|XP_004147088.1| PREDICTED: SAC3 family protein 1-like [Cucumis sativus] gi|449503506|ref|XP_004162036.1| PREDICTED: SAC3 family protein 1-like [Cucumis sativus]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/239 (64%), Positives = 189/239 (79%)

Query: 32  LSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91
             +TRS+RQDL +QNIVN+KA+NM+E++V+FH ISH KL +  SSS+ S +H+LN++QL+
Sbjct: 186 FDRTRSIRQDLSIQNIVNEKAVNMYEEMVRFHTISHQKLLNGDSSSNASSMHHLNMQQLS 245

Query: 92  KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
           K L +L NLYE NRS+  I E EAEF SFYVLLHL SN Q  GESL+LWFR + SP+IKS
Sbjct: 246 KTLITLLNLYEVNRSNGAIFENEAEFHSFYVLLHLGSNSQTTGESLTLWFRTLRSPVIKS 305

Query: 152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
           KEM FAR+ LRYF+M NY+ FL T+ AEAS LQYCI+EPY++EVR+LAL  I+N  YKL+
Sbjct: 306 KEMCFARRILRYFRMCNYKGFLCTIGAEASNLQYCILEPYVNEVRALALSFINNGGYKLN 365

Query: 212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFL 270
           PYPL  LS +LMMEES+VE FC A GL TC DE+GNK LPTKQTTF  PKG  Q Y+FL
Sbjct: 366 PYPLVDLSMLLMMEESEVESFCQACGLATCGDELGNKSLPTKQTTFSSPKGVFQRYNFL 424

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084674|emb|CBI25811.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (801), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 155/244 (63%), Positives = 186/244 (76%)

Query: 32  LSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91
             +TRS+RQDL MQNIVND+ I+M+E++VKFH++SHHKLRS  S  + S +HYLN+EQL 
Sbjct: 178 FDRTRSIRQDLSMQNIVNDQTIHMYEEMVKFHIMSHHKLRSCSSKPNFSSVHYLNMEQLK 237

Query: 92  KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
           K L SLY LYE NR+S  I++ E EF SF+VLLHL SN QP+GESLSLW   VPS I+KS
Sbjct: 238 KCLISLYALYEENRNSNSIYKNEPEFCSFHVLLHLGSNNQPLGESLSLWLGRVPSLILKS 297

Query: 152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
           KEM FAR+ LR F+MGNY+RFL T A EASYLQY IIEPYI+EVR+LAL C++ C YKLH
Sbjct: 298 KEMCFARRLLRLFRMGNYKRFLCTTATEASYLQYYIIEPYINEVRALALSCVNYCGYKLH 357

Query: 212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLG 271
           PYP+ HLSK+LMM+E DVE FCNA GL+T   E GNK L TKQT F  PK    +Y  LG
Sbjct: 358 PYPIAHLSKLLMMKELDVESFCNACGLETSTGERGNKFLSTKQTNFHYPKEVFPSYCLLG 417

Query: 272 FQQL 275
            +  
Sbjct: 418 LEHF 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449759|ref|XP_002269431.1| PREDICTED: SAC3 family protein 1-like [Vitis vinifera]

 Score =  312 bits (800), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 155/244 (63%), Positives = 186/244 (76%)

Query: 32  LSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91
             +TRS+RQDL MQNIVND+ I+M+E++VKFH++SHHKLRS  S  + S +HYLN+EQL 
Sbjct: 164 FDRTRSIRQDLSMQNIVNDQTIHMYEEMVKFHIMSHHKLRSCSSKPNFSSVHYLNMEQLK 223

Query: 92  KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
           K L SLY LYE NR+S  I++ E EF SF+VLLHL SN QP+GESLSLW   VPS I+KS
Sbjct: 224 KCLISLYALYEENRNSNSIYKNEPEFCSFHVLLHLGSNNQPLGESLSLWLGRVPSLILKS 283

Query: 152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
           KEM FAR+ LR F+MGNY+RFL T A EASYLQY IIEPYI+EVR+LAL C++ C YKLH
Sbjct: 284 KEMCFARRLLRLFRMGNYKRFLCTTATEASYLQYYIIEPYINEVRALALSCVNYCGYKLH 343

Query: 212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLG 271
           PYP+ HLSK+LMM+E DVE FCNA GL+T   E GNK L TKQT F  PK    +Y  LG
Sbjct: 344 PYPIAHLSKLLMMKELDVESFCNACGLETSTGERGNKFLSTKQTNFHYPKEVFPSYCLLG 403

Query: 272 FQQL 275
            +  
Sbjct: 404 LEHF 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494990|ref|XP_003634893.1| PREDICTED: LOW QUALITY PROTEIN: SAC3 family protein 1-like [Vitis vinifera]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 155/244 (63%), Positives = 186/244 (76%)

Query: 32  LSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91
             +TRS+RQDL MQNIVND+ I+M+E++VKFH+ISHHKLRS  +  + S +HYLN+EQL 
Sbjct: 164 FDRTRSIRQDLSMQNIVNDQTIHMYEEMVKFHIISHHKLRSCSNKPNFSSVHYLNMEQLK 223

Query: 92  KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
           K L SLY LYE NR+S  I++ E EF SF+VLLHL SN QP+GESLSLW   VPS I+KS
Sbjct: 224 KCLISLYALYEENRNSNSIYKNEPEFCSFHVLLHLGSNNQPLGESLSLWLGRVPSLILKS 283

Query: 152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
           KEM FAR+ LR F+MGNY+RFL T A EASYLQY IIEPYI+EVR+LAL C++ C YKLH
Sbjct: 284 KEMCFARRLLRLFRMGNYKRFLCTTATEASYLQYYIIEPYINEVRALALSCVNYCGYKLH 343

Query: 212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLG 271
           PYP+ HLSK+LMM+E DVE FCNA GL+T   E GNK L TKQT F  PK    +Y  LG
Sbjct: 344 PYPIAHLSKLLMMKELDVESFCNACGLETSTGERGNKFLSTKQTNFHYPKEVFPSYCLLG 403

Query: 272 FQQL 275
            +  
Sbjct: 404 LEHF 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205116|emb|CBI40637.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 155/244 (63%), Positives = 185/244 (75%)

Query: 32  LSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT 91
             +TRS+RQDL MQNIVND+ I+M+E++VKFH+ISHHKLRS  S  + S +HYLN+EQL 
Sbjct: 181 FDRTRSIRQDLSMQNIVNDQTIHMYEEMVKFHIISHHKLRSCSSKPNFSSVHYLNMEQLK 240

Query: 92  KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS 151
           K L SLY LYE NR+S  I++ E EF SF+VLLHL SN QP+GESLSLW   VPS I+KS
Sbjct: 241 KCLISLYALYEENRNSNSIYKNEPEFCSFHVLLHLGSNNQPLGESLSLWLGRVPSLILKS 300

Query: 152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
           KEM FAR+ LR F+MGNY+RFL T A EASYLQY IIEPYI+EVR+LAL C++ C YKLH
Sbjct: 301 KEMCFARRLLRLFRMGNYKRFLCTTATEASYLQYYIIEPYINEVRALALSCVNYCGYKLH 360

Query: 212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLG 271
           PYP+ HLSK+LMM+E DVE FCNA GL+T   E GNK L TKQT F  PK    +Y  L 
Sbjct: 361 PYPIAHLSKLLMMKELDVESFCNACGLETSTGERGNKFLSTKQTNFHYPKEVFPSYCLLS 420

Query: 272 FQQL 275
            +  
Sbjct: 421 LEHF 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2096189	406	SAC3C "AT3G54380" [Arabidopsis	0.946	0.655	0.477	6.9e-63
TAIR|locus:2082485	1697	SAC3B "AT3G06290" [Arabidopsis	0.740	0.122	0.314	5.6e-22
UNIPROTKB|F1NVG3	1659	MCM3AP "Uncharacterized protei	0.686	0.116	0.308	6.4e-16
ZFIN|ZDB-GENE-040715-1	2118	mcm3ap "MCM3 minichromosome ma	0.686	0.091	0.294	1.3e-14
MGI|MGI:1930089	1971	Mcm3ap "minichromosome mainten	0.761	0.108	0.271	3.8e-13
UNIPROTKB|E1BJE7	1979	MCM3AP "Uncharacterized protei	0.761	0.108	0.266	5.8e-13
UNIPROTKB|I3LCF4	1990	MCM3AP "Uncharacterized protei	0.754	0.106	0.285	5.8e-13
RGD|1306834	1908	Mcm3ap "minichromosome mainten	0.761	0.112	0.266	1.3e-12
WB|WBGene00017642	1116	F20D12.2 [Caenorhabditis elega	0.697	0.175	0.289	7.1e-12
UNIPROTKB|O60318	1980	MCM3AP "80 kDa MCM3-associated	0.761	0.108	0.258	1.4e-11

TAIR|locus:2096189 SAC3C "AT3G54380" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 128/268 (47%), Positives = 177/268 (66%)

Query:    12 LLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLR 71
             LL     +  P +  H      +TRS+RQDL +QN+ N++ I ++E++VKFHVISH +L+
Sbjct:   141 LLSLLDSKEHPFEVVHDFI-FDRTRSIRQDLSIQNLANERVIYLYEEMVKFHVISHERLQ 199

Query:    72 XXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQ 131
                       +H+LN+EQL K LTSLYN+Y+ANR    I+E EAEFRS YVLLHL+ +  
Sbjct:   200 SCSGTSISS-MHHLNMEQLAKTLTSLYNIYDANRKPDYIYENEAEFRSLYVLLHLNPSSG 258

Query:   132 PVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPY 191
              +GE LSLWFR +   ++KSKE+ F R  LR ++MGNY+ FLS  A+EA+YLQYCI E +
Sbjct:   259 VMGEPLSLWFRKLTFALVKSKEICFVRNLLRLYRMGNYKNFLSRTASEATYLQYCISEHH 318

Query:   192 IDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLP 251
             I E+R +A+  I+N CYKL PYPL  LS+ L M+E DVE  C+  GL+TC D  G  +LP
Sbjct:   319 IREMRLVAVQYINNVCYKLQPYPLLRLSQNLKMKELDVESLCHECGLETCTDPDGFTVLP 378

Query:   252 TKQTTFCRPKGGLQNYSFLGFQQLGRQI 279
              KQ+TF  P+   + Y  +G +++   I
Sbjct:   379 VKQSTFRSPEDKFKVYDLIGIERIKMSI 406

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2082485 SAC3B "AT3G06290" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 5.6e-22, P = 5.6e-22
 Identities = 67/213 (31%), Positives = 111/213 (52%)

Query:    36 RSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLH--YLNLEQLTKA 93
             R++R DL MQ+I N +AI + E++++ H+I+ H+L               +LN+EQ+ K 
Sbjct:   573 RAIRMDLRMQHIFNQEAITLLEQMIRLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKT 632

Query:    94 LTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSN-GQPVGES-LSLWFRHVPSPIIKS 151
                L+ +Y+ +R        E EFR +Y LL LD + G  V  S LSL   ++   I ++
Sbjct:   633 SVELFQMYDDHRKKGITVPTEKEFRGYYALLKLDKHPGYKVEPSELSLDLANMTPEIRQT 692

Query:   152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
              E+ FAR   R  + GN+  F   +A +ASYLQ C++  +  ++R+ AL  +H+      
Sbjct:   693 SEVLFARNVARACRTGNFIAFFR-LARKASYLQACLMHAHFSKLRTQALASLHSGLQINQ 751

Query:   212 PYPLGHLSKVLMMEESDVELFCNAYGLQTCIDE 244
               P+  +S  + MEE D+E     +G    + E
Sbjct:   752 GLPVSDMSNWIGMEEEDIEALLEYHGFSIKVFE 784

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0034399 "nuclear periphery" evidence=IDA

UNIPROTKB|F1NVG3 MCM3AP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 214 (80.4 bits), Expect = 6.4e-16, P = 6.4e-16
 Identities = 66/214 (30%), Positives = 109/214 (50%)

Query:    33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHV-ISHHKLRXXXXXXXXXPLHYLNLEQLT 91
             ++TR +R+D+  Q++ N   +++ EK  +FH+  +HH                +N E +T
Sbjct:   407 NRTRGIRKDITQQHLCNPLMVSLIEKCTRFHIHCAHHLCEEPMSSFDAK----INNENMT 462

Query:    92 KALTSLYNLYEANRSSKPIHEK-EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIK 150
             K L SL  +Y+ + ++K I+ K EAEFR + VLL+L+      G+ L    +  P  +  
Sbjct:   463 KCLQSLKEMYQ-DLANKGIYCKSEAEFRGYNVLLNLNK-----GDILREVQQFHPE-VRN 515

Query:   151 SKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKL 210
             S E+ FA QA       N+ RF   V A ASYL  C++  Y +++R  AL  + N  Y +
Sbjct:   516 SPEVRFAVQAFAALNSNNFVRFFKLVQA-ASYLNACLLHCYFNQIRKDALKSL-NIAYTV 573

Query:   211 HP-----YPLGHLSKVLMMEESDVEL-FCNAYGL 238
                    +PL HL  +L+ ++ +    F + YGL
Sbjct:   574 STQRCTAFPLDHLVHMLLFKDCEEATDFISYYGL 607

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

ZFIN|ZDB-GENE-040715-1 mcm3ap "MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 63/214 (29%), Positives = 109/214 (50%)

Query:    33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHV-ISHHKLRXXXXXXXXXPLHYLNLEQLT 91
             ++TR +R+D+  Q++ + + +++ EK  +FH+  +HH  +             +N E +T
Sbjct:   777 NRTRGIRKDITQQHLCDPETVSLIEKCTRFHIHCAHHLCQEPMMSFDAK----INNENMT 832

Query:    92 KALTSLYNLYEANRSSKPIH-EKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIK 150
             K L SL  +Y+ + ++K ++  KEAEFR + VL+ L+ +G  + E     FR     I +
Sbjct:   833 KCLQSLKEMYQ-DLATKEVYCPKEAEFRQYNVLVKLN-DGDILREVQQ--FR---KEIRE 885

Query:   151 SKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKL 210
             S E+ FA Q        N+ RF   V+A ASYL  CI+  Y ++VR  AL  + N  + +
Sbjct:   886 SPEVTFAVQVFAALNSNNFVRFFKLVSA-ASYLSSCILHRYFNQVRRQALKIL-NVAFTV 943

Query:   211 HP-----YPLGHLSKVLMMEES-DVELFCNAYGL 238
                    +P+    ++LM   + +   F   YGL
Sbjct:   944 GSQRSTIFPVEDFVRMLMFRNATEATEFIQQYGL 977

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1930089 Mcm3ap "minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Mus musculus (taxid:10090)]

 Score = 196 (74.1 bits), Expect = 3.8e-13, P = 3.8e-13
 Identities = 64/236 (27%), Positives = 112/236 (47%)

Query:    33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTK 92
             ++TR +R+D+  Q++ +   +++ EK  +FH+   H +           +   N E +TK
Sbjct:   718 NRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKI---NNENMTK 774

Query:    93 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK 152
              L SL  +Y+  R+       EAEF+ + VLL+L+  G  + E       H P  +  S 
Sbjct:   775 CLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNK-GDILREVQQF---H-PD-VRNSP 828

Query:   153 EMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 212
             E+ FA QA       N+ RF   V + ASYL  C++  Y +++R  AL  + N  Y +  
Sbjct:   829 EVNFAVQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFNQIRKDALRAL-NVAYTVST 886

Query:   213 -----YPLGHLSKVLMMEESDVEL-FCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 262
                  +PL  + ++L+  +S+    F N +GL      V +  +   ++ F  P+G
Sbjct:   887 QRSTVFPLDGVVRMLLFRDSEEATNFLNYHGLT-----VADGCVELNRSAFLEPEG 937

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

UNIPROTKB|E1BJE7 MCM3AP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 5.8e-13, P = 5.8e-13
 Identities = 63/236 (26%), Positives = 112/236 (47%)

Query:    33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTK 92
             ++TR +R+D+  Q++ +   +++ EK  +FH+   H +           +   N E +TK
Sbjct:   723 NRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKI---NNENMTK 779

Query:    93 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK 152
              L SL  +Y+  R+       EAEF+ + VLL+L+  G  + E       H P+ +  S 
Sbjct:   780 CLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNK-GDILREVQQF---H-PA-VRNSP 833

Query:   153 EMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 212
             E+ FA QA       N+ RF   V + ASYL  C++  Y +++R  AL  + N  Y    
Sbjct:   834 EVKFAVQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFNQIRKDALRAL-NVAYTAST 891

Query:   213 -----YPLGHLSKVLMMEESDVEL-FCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 262
                  +PL  + ++L+  + +    F N +GL      V +  +   +++F  P+G
Sbjct:   892 QRSTIFPLDGVVRMLLFRDGEEATDFLNCHGLT-----VSDGCVELNRSSFLEPEG 942

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|I3LCF4 MCM3AP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 195 (73.7 bits), Expect = 5.8e-13, P = 5.8e-13
 Identities = 68/238 (28%), Positives = 115/238 (48%)

Query:    33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTK 92
             ++TR +R+D+  Q++ +   +++ EK  +FH+   H +           +   N E +T+
Sbjct:   728 NRTRGIRKDITQQHLCDPVTVSLIEKCTRFHIHCAHFMCEEPMSSFDANI---NSENMTR 784

Query:    93 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK 152
              L SL  +Y+  R        EAEF+ + VLLHL+  G  + E       H P+ +  S 
Sbjct:   785 CLQSLKEMYQDLRVKGVFCAGEAEFQGYNVLLHLNK-GDILREVQQF---H-PA-VRNSS 838

Query:   153 EMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 212
             E+ FA QA       N+ RF   V + ASYL  C++  Y +++R  AL  + N  Y + P
Sbjct:   839 EVKFAVQAFAALNSNNFVRFFKLVQS-ASYLNACLLHRYFNQIRRDALRAL-NVAYTVSP 896

Query:   213 -----YPLGHLSKVLMM---EESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 262
                  +PL  + ++L+    EE+   L C  +GL T  D  G   +   +++F  P+G
Sbjct:   897 QRSTVFPLDSVVRMLLFQDCEEATDVLSC--HGL-TASD--G--CVELNRSSFLEPEG 947

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1306834 Mcm3ap "minichromosome maintenance complex component 3 associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 63/236 (26%), Positives = 111/236 (47%)

Query:    33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTK 92
             ++TR +R+D+  Q++ +   +++ EK  +FH+   H +           +   N E +TK
Sbjct:   723 NRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKI---NNENMTK 779

Query:    93 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK 152
              L SL  +Y+  R+       EAEF+ + VLL+L+  G  + E       H P  +  S 
Sbjct:   780 CLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNK-GDILREVQQF---H-PD-VRNSP 833

Query:   153 EMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 212
             E+ FA QA       N+ RF   V + ASYL  C++  Y +++R  AL  + N  Y +  
Sbjct:   834 EVDFAVQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFNQIRKDALRAL-NVAYTVST 891

Query:   213 -----YPLGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 262
                  +PL  + ++L+  +  +   F N +GL      V +  +   ++ F  P+G
Sbjct:   892 QRSTVFPLDGVVRMLLFRDCEEATSFLNYHGLT-----VADGCVELNRSAFLEPEG 942

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IEA;ISO

WB|WBGene00017642 F20D12.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 186 (70.5 bits), Expect = 7.1e-12, P = 7.1e-12
 Identities = 61/211 (28%), Positives = 107/211 (50%)

Query:    33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTK 92
             ++TR++R+++   ++ +  A+N+ E+  + H++  + L          P   +N E L K
Sbjct:   382 NRTRALRKEVTQLSLSDTLALNLVERCTRLHILFGYVL-CDLGVEQFDPA--MNNETLGK 438

Query:    93 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-DSNGQPVGESLSLWFRHVPSPIIKS 151
              L +L +LYE         E E EFRS+ V+LH+ D+N   + + L+  +R   S + +S
Sbjct:   439 CLQTLRHLYEDFEKRGISCENEPEFRSYDVMLHMNDTN--VLAQVLA--YR---SEVRQS 491

Query:   152 KEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH 211
             + +  A Q    F+  NY RF   +  +ASYLQ C+        RS A+  I +  Y + 
Sbjct:   492 QPVRLALQLATAFRDNNYFRFFRLLQTQASYLQCCVAHKLFAVTRSNAIR-IMSISYGIG 550

Query:   212 --PYPLGHLSKVLMMEES-DVELFCNAYGLQ 239
               PYPL  L ++L  + + D+ +  N Y L+
Sbjct:   551 NIPYPLDKLQRILGFDNTEDLTVMLNIYELE 581

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

UNIPROTKB|O60318 MCM3AP "80 kDa MCM3-associated protein" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 61/236 (25%), Positives = 109/236 (46%)

Query:    33 SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTK 92
             ++TR +R+D+  Q++ +   +++ EK  +FH+   H +           +   N E +TK
Sbjct:   725 NRTRGIRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFMCEEPMSSFDAKI---NNENMTK 781

Query:    93 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSK 152
              L SL  +Y+  R+       EAEF+ + VLL L+      G+ L    +  P+ +  S 
Sbjct:   782 CLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLSLNK-----GDILREVQQFHPA-VRNSS 835

Query:   153 EMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP 212
             E+ FA QA       N+ RF   V + ASYL  C++  Y  ++R  AL  + N  Y +  
Sbjct:   836 EVKFAVQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFSQIRKDALRAL-NFAYTVST 893

Query:   213 -----YPLGHLSKVLMMEESDVEL-FCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 262
                  +PL  + ++L+  + +    F   +GL      V +  +   ++ F  P+G
Sbjct:   894 QRSTIFPLDGVVRMLLFRDCEEATDFLTCHGLT-----VSDGCVELNRSAFLEPEG 944

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0003677 "DNA binding" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0006606 "protein import into nucleus" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.6900.1 hypothetical protein (357 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
COG5079	646	COG5079, SAC3, Nuclear protein export factor [Intr	9e-20
pfam03399	155	pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p2	3e-11

>gnl|CDD|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]

 Score = 88.4 bits (219), Expect = 9e-20
 Identities = 67/231 (29%), Positives = 98/231 (42%), Gaps = 31/231 (13%)

Query: 35  TRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKAL 94
           TR+VRQD  +QN     A+   E+I +FH++  H L      S         LEQL K+L
Sbjct: 164 TRAVRQDFTIQNEKGKDAVECHERIARFHILFLHLLHDHPHFSK-----QQELEQLKKSL 218

Query: 95  TSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQP-VGESLSLWFRHVPSPIIKSKE 153
            SL  LY+  R+ K     EAEFR++ +L  L   G P     +  W    P  I     
Sbjct: 219 ASLIELYDDGRAGKKECPNEAEFRAYAILASL---GDPRYVAGIQGW----PGGIFCDLP 271

Query: 154 MWFARQALRYFQMGNYR---------------RFLSTVAAEA-SYLQYCIIEPYIDEVRS 197
           +  A + ++  Q  N+R               RF   + + +  YL  C++E +   +R 
Sbjct: 272 VQIALKLMQLAQSNNFRLLGRRNTEACFNLYTRFFKLIQSPSVQYLMGCLLEKHNISIRG 331

Query: 198 LALCCIHNCCYKLH-PYPLGHLSKVLMMEESD-VELFCNAYGLQTCIDEVG 246
            AL  +       H   P   LS +L  EE    E FC  YGL+  I++  
Sbjct: 332 GALKAMEKEIESAHKNIPFVDLSGILDFEEKGEGEEFCKYYGLEIRIEDSV 382

Length = 646

>gnl|CDD|217534 pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p25 family

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 86  NLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVP 145
           +LEQ  + L+ L  LY+           EAEF ++Y+L  L +N  P+ +  +     +P
Sbjct: 28  DLEQFNQCLSQLKELYD---DLLGKSPNEAEFIAYYLLYLLSNN--PISDFHTELEL-LP 81

Query: 146 SPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHN 205
             I     + FA +  +    GNY RF   +  +A YL  C++E ++D +R  AL  I  
Sbjct: 82  DEIRNDPYIQFALELEQALMEGNYHRFFRLL-KKAPYLYACLLERFLDRIRKEALKAI-- 138

Query: 206 CCYKLHPYPLGHLSKVLM 223
                   PL +L+++L 
Sbjct: 139 -SKAYRSIPLSYLAELLG 155

This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
KOG1860	927	consensus Nuclear protein export factor [Intracell	100.0
COG5079	646	SAC3 Nuclear protein export factor [Intracellular	100.0
PF03399	204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	100.0
KOG1861	540	consensus Leucine permease transcriptional regulat	100.0
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	98.91
KOG3151	260	consensus 26S proteasome regulatory complex, subun	98.08
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	96.08
KOG3252	217	consensus Uncharacterized conserved protein [Funct	91.64
KOG4414	197	consensus COP9 signalosome, subunit CSN8 [Posttran	84.77
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	84.27
smart00753	88	PAM PCI/PINT associated module.	83.49
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	83.49
KOG0687	393	consensus 26S proteasome regulatory complex, subun	83.02

>KOG1860 consensus Nuclear protein export factor [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.1e-47  Score=380.52  Aligned_cols=233  Identities=31%  Similarity=0.518  Sum_probs=205.6

Q ss_pred             cccccchHHHHHHHhccCCCCccccccccccchhhhhhhhhHhccCChhHHHHHHHHHHHHHHhhhhhhccCCCCCCChh
Q 023489            3 ILAIHLQPLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPL   82 (281)
Q Consensus         3 ~~~~~~~~~ll~~~~~~~~~~~~~Y~F~i~DRlRaIRQDltvQ~i~~~~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~   82 (281)
                      ||-.++=+++-+.+...+.++..+|+| +||||||||||+|+||+.+..||.++|+|+||||++.|+||+.+  +.|  |
T Consensus       168 VL~~T~dYLl~~v~~~~~~sl~~~y~F-vwDRtRAVR~D~t~Q~~~d~~Av~llE~i~RfhI~~~h~Lce~~--~~F--d  242 (927)
T KOG1860|consen  168 VLVKTVDYLLGKVLCDKDISLREMYDF-VWDRTRAVRQDFTIQNYSDQEAVELLERIARFHILFRHRLCEEP--EQF--D  242 (927)
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHH-HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccCc--ccC--C
Confidence            444455444445566667799999999 99999999999999999999999999999999999999999987  357  6


Q ss_pred             hhhcHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCChhhhcChhHHHHHHHHH
Q 023489           83 HYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALR  162 (281)
Q Consensus        83 ~~~n~eql~qcl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~~p~v~~Al~i~~  162 (281)
                      .++|+|||++|+.+|.++|+|.++.|+.||||+||+||++|++|++++. ..+     .+.+|+++++++.|++|+.+++
T Consensus       243 a~~nlEQL~K~l~sL~elYdD~r~~g~~cpnE~EFR~Y~vLl~Lgd~~~-~~~-----iq~~~~evr~~~~Vk~al~~~~  316 (927)
T KOG1860|consen  243 AQQNLEQLQKCLQSLGELYDDLRKGGIPCPNEPEFRGYYVLLSLGDPQV-VRD-----IQAWPDEVRQDSEVKLALCLRR  316 (927)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhcCCchH-HHH-----HHhcCcccccchhHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999874 222     4578999999999999999999


Q ss_pred             HHHhCcHHHHHH------------------HHHh-CCchHHHHHHHHhHHHHHHHHHHHHHhhcCCC--CCcCHHHHHHH
Q 023489          163 YFQMGNYRRFLS------------------TVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYKL--HPYPLGHLSKV  221 (281)
Q Consensus       163 a~~~~Ny~rFF~------------------L~~~-~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~--~~~pl~~L~~~  221 (281)
                      |++.|||.+||+                  +..+ ..++|++|+++.+|+.+|..|+++|.++ |+.  .++|+.++.++
T Consensus       317 a~~~nn~~~~~r~~~~~t~a~~~l~~~~~~l~q~p~~~~L~~~v~~~~f~~ir~~al~~~~~~-~~~~~~~vp~~~l~~~  395 (927)
T KOG1860|consen  317 AFQSNNFRRFFRLSSLRTEALQNLYTRFFKLMQSPALPYLMGCVLELFFPDIRWAALRAMSHA-YNSKHVPVPLGKLDRI  395 (927)
T ss_pred             HhccCCeeeeeeccchhHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCcchhHHHHH
Confidence            999999988874                  4433 4788999999999999999999999997 754  68999999999


Q ss_pred             HcCC-chHHHHHHHHhCCeeeecCCCc
Q 023489          222 LMME-ESDVELFCNAYGLQTCIDEVGN  247 (281)
Q Consensus       222 L~fd-d~e~~~fc~~~Gl~~~~d~~g~  247 (281)
                      |+|+ .++...+|..|||+++.|..++
T Consensus       396 l~f~~~e~~~~~~~~y~Leis~~~~~~  422 (927)
T KOG1860|consen  396 LLFDGEEELKVVCNYYGLEISVDDKIV  422 (927)
T ss_pred             HhcCChhhhHhhhhheeeEeecccccc
Confidence            9999 5789999999999998765444

>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]

Probab=100.00  E-value=3.7e-44  Score=340.50  Aligned_cols=219  Identities=29%  Similarity=0.407  Sum_probs=197.4

Q ss_pred             cCCCCccccccccccchhhhhhhhhHhccCChhHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHHHHHHHHHHH
Q 023489           19 RCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLY   98 (281)
Q Consensus        19 ~~~~~~~~Y~F~i~DRlRaIRQDltvQ~i~~~~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eql~qcl~~L~   98 (281)
                      ..+++...|.| +|||+||||||+|+||..+..||+|+|++|||||++.|.|++.+   .|+  .+|++|||.+.|.+|.
T Consensus       149 ~~d~l~e~~~F-v~drtRavrqDftiQN~~g~dAV~c~EriaRfhIl~lh~L~~~p---~Fs--~qqeleQL~ksL~sL~  222 (646)
T COG5079         149 AGDQLIEMHRF-VRDRTRAVRQDFTIQNEKGKDAVECHERIARFHILFLHLLHDHP---HFS--KQQELEQLKKSLASLI  222 (646)
T ss_pred             cCcchHHHHHH-HHhhhHHHHhhceeecccCchHHHHHHHHHHHHHHHHHHHhcCc---ccc--HHhHHHHHHHHHHHHH
Confidence            46788999999 99999999999999999999999999999999999999999974   586  7899999999999999


Q ss_pred             HHHHhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCChhhhcChhHHHHHHHHHHHHhCc----------
Q 023489           99 NLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGN----------  168 (281)
Q Consensus        99 ~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~~p~v~~Al~i~~a~~~~N----------  168 (281)
                      ++|++++..+..||||+||+||.||.+|+|+.-  +..    .+.+|..++.++.|+.|+...+-.+.||          
T Consensus       223 elYdd~r~~~~~cpneaEFraYaiL~slgDp~y--v~~----iq~wp~~if~d~~vq~alkl~~laq~nn~r~~~~rnte  296 (646)
T COG5079         223 ELYDDGRAGKKECPNEAEFRAYAILASLGDPRY--VAG----IQGWPGGIFCDLPVQIALKLMQLAQSNNFRLLGRRNTE  296 (646)
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHhCCchh--hhc----cccCCccccccchHHHHHHHHHHhhccCeeeccccchh
Confidence            999999998889999999999999999999874  221    3567999999999999999988776665          


Q ss_pred             -----HHHHHHHHHh-CCchHHHHHHHHhHHHHHHHHHHHHHhhcCCC--CCcCHHHHHHHHcCCc-hHHHHHHHHhCCe
Q 023489          169 -----YRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYKL--HPYPLGHLSKVLMMEE-SDVELFCNAYGLQ  239 (281)
Q Consensus       169 -----y~rFF~L~~~-~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~--~~~pl~~L~~~L~fdd-~e~~~fc~~~Gl~  239 (281)
                           |.|||+++++ .++||++|+++.|+..+|..||+.|.++ +..  .++|..++..+|.|++ +|+++||+.||++
T Consensus       297 ac~nlytrFfkl~qSpsv~~lmg~lle~h~~sir~~aLkAm~k~-~~sahk~ipf~~l~~il~f~~~~e~~efckyy~le  375 (646)
T COG5079         297 ACFNLYTRFFKLIQSPSVQYLMGCLLEKHNISIRGGALKAMEKE-IESAHKNIPFVDLSGILDFEEKGEGEEFCKYYGLE  375 (646)
T ss_pred             hhhHHHHHHHHHHhCccHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHhhcCCCeehhhhhccccccchhHHHhhhccee
Confidence                 8999999987 7999999999999999999999999997 422  4799999999999996 6899999999999


Q ss_pred             eeecCCCcccc
Q 023489          240 TCIDEVGNKLL  250 (281)
Q Consensus       240 ~~~d~~g~~~~  250 (281)
                      +..+.+|+..+
T Consensus       376 i~~ed~~~l~i  386 (646)
T COG5079         376 IRIEDSVKLPI  386 (646)
T ss_pred             eecccccccch
Confidence            98766676543

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]

Probab=100.00  E-value=5e-43  Score=305.86  Aligned_cols=178  Identities=35%  Similarity=0.537  Sum_probs=148.1

Q ss_pred             CCccccccccccchhhhhhhhhHhccCChhHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHHHHHHHHHHHHHH
Q 023489           22 PRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLY  101 (281)
Q Consensus        22 ~~~~~Y~F~i~DRlRaIRQDltvQ~i~~~~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eql~qcl~~L~~lY  101 (281)
                      ++.++|+| ||||+||||||++|||+.++++|+|||.+|||+|++                  .|.+||++|+++|+++|
T Consensus        26 ~~~~~y~f-i~drlRsiRqDl~vQ~~~~~~~i~v~E~~ar~~i~~------------------~d~~qf~~c~~~L~~lY   86 (204)
T PF03399_consen   26 PFKDDYNF-IWDRLRSIRQDLTVQNIENDFAIKVYERIARFAIES------------------GDLEQFNQCLSQLKELY   86 (204)
T ss_dssp             CCCCHHHH-HHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHH-HHHHhHHHHhhHHHHhcCCHHHHHHHHHHHHHHhhc------------------CCHHHHHHHHHHHHHHH
Confidence            88889999 999999999999999999999999999999999976                  25889999999999999


Q ss_pred             HhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCChhhhcChhHHHHHHHHHHHHhCcHHHHHHHHH-hCC
Q 023489          102 EANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVA-AEA  180 (281)
Q Consensus       102 ~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~~p~v~~Al~i~~a~~~~Ny~rFF~L~~-~~~  180 (281)
                      ++.+. +.+++|++||.||+||+++.+.+.  .+ +...+..+|++++++|.|++|++|..|+.+|||++||++++ +++
T Consensus        87 ~~~~~-~~~~~~~~ef~~y~lL~~l~~~~~--~~-~~~~l~~l~~~~~~~~~i~~al~l~~a~~~gny~~ff~l~~~~~~  162 (204)
T PF03399_consen   87 DDLRD-LPPSPNEAEFIAYYLLYLLCQNNI--PD-FHMELELLPSEILSSPYIQFALELCRALMEGNYVRFFRLYRSKSA  162 (204)
T ss_dssp             HHHHH-T---TTHHHHHHHHHHHTT-T-----TH-HHHHHTTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHT-TTS
T ss_pred             Hhhcc-CCCCCCHHHHHHHHHHHHHHcccc--hH-HHHHHHHCchhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhccCC
Confidence            99743 567899999999999999954422  22 33346678999999999999999999999999999999982 279


Q ss_pred             chHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcC
Q 023489          181 SYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMM  224 (281)
Q Consensus       181 ~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~f  224 (281)
                      |++.+|+++.+++.||..||++|++| |++ ++|++.+++||+|
T Consensus       163 ~~l~~~l~~~~~~~iR~~al~~i~~a-y~~-~i~l~~l~~~L~F  204 (204)
T PF03399_consen  163 PYLFACLMERFFNRIRLRALQSISKA-YRS-SIPLSFLAELLGF  204 (204)
T ss_dssp             -HHHHHHHGGGHHHHHHHHHHHHHHH-S-T--EEHHHHHHHTT-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHH-cCC-CCCHHHHHHHcCC
Confidence            99999999999999999999999996 875 6999999999998

The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.

>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]

Probab=100.00  E-value=3.6e-42  Score=324.75  Aligned_cols=217  Identities=18%  Similarity=0.287  Sum_probs=186.3

Q ss_pred             cccchHHHHHHHhccCCCCccccccccccchhhhhhhhhHhccCChhHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhh
Q 023489            5 AIHLQPLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHY   84 (281)
Q Consensus         5 ~~~~~~~ll~~~~~~~~~~~~~Y~F~i~DRlRaIRQDltvQ~i~~~~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~   84 (281)
                      +..|+.+-|-+++.++..- .-|.| ++|||||||||||||+|+|+|||+|||+|||++++.                  
T Consensus       302 P~~VL~ksL~~vkdk~k~~-~~Y~y-~CdQ~KSiRQDLTVQ~IrneFTveVYEtHARIALEk------------------  361 (540)
T KOG1861|consen  302 PLEVLKKSLCLVKDKWKAK-ANYAY-LCDQFKSIRQDLTVQRIRNEFTVEVYETHARIALEK------------------  361 (540)
T ss_pred             CHHHHHHHHHHHHHHHHhh-ccHHH-HHHHHHHHhhhhhhheeccceeeeeehhhhHHHHhc------------------
Confidence            4456666676777765544 67999 999999999999999999999999999999999842                  


Q ss_pred             hcHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCChhhhcChhHHHHHHHHHHH
Q 023489           85 LNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYF  164 (281)
Q Consensus        85 ~n~eql~qcl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~~p~v~~Al~i~~a~  164 (281)
                      .+.++||||+++|+.+|.+.    +++. -.||.||+|||.|-..+.  .++ ...++.|++++.++|.|.+||+++.|+
T Consensus       362 GD~~EfNQCQtQLk~LY~eg----ipg~-~~EF~AYriLY~i~tkN~--~di-~sll~~lt~E~ked~~V~hAL~vR~A~  433 (540)
T KOG1861|consen  362 GDLEEFNQCQTQLKALYSEG----IPGA-YLEFTAYRILYYIFTKNY--PDI-LSLLRDLTEEDKEDEAVAHALEVRSAV  433 (540)
T ss_pred             CCHHHHHHHHHHHHHHHccC----CCCc-hhhHHHHHHHHHHHhcCc--hHH-HHHHHhccHhhccCHHHHHHHHHHHHH
Confidence            47889999999999999553    2333 799999999999966654  243 345889999999999999999999999


Q ss_pred             HhCcHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCc-hHHHHHHHHhCCeeeec
Q 023489          165 QMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQTCID  243 (281)
Q Consensus       165 ~~~Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd-~e~~~fc~~~Gl~~~~d  243 (281)
                      ..|||++||+|++ .+|.+..|+|+.|+++.|..||.+|+|| |++ .+|+++|++.|.|++ ++|..|++.+|++-  +
T Consensus       434 ~~GNY~kFFrLY~-~AP~M~~yLmdlF~erER~~Al~ii~Ks-yrP-~i~~~fi~~~laf~~~e~c~~~l~~~~~~~--~  508 (540)
T KOG1861|consen  434 TLGNYHKFFRLYL-TAPNMSGYLMDLFLERERKKALTIICKS-YRP-TITVDFIASELAFDSMEDCVNFLNEQNLTY--D  508 (540)
T ss_pred             HhccHHHHHHHHh-hcccchhHHHHHHHHHHHHHHHHHHHHH-cCC-CccHHHHhhhhhhchHHHHHHHHhccCccc--c
Confidence            9999999999997 7999999999999999999999999996 996 699999999999996 67999999999765  5


Q ss_pred             CCCccccccCc
Q 023489          244 EVGNKLLPTKQ  254 (281)
Q Consensus       244 ~~g~~~~~~k~  254 (281)
                      ..|..++..+-
T Consensus       509 ~~g~~~~~~~~  519 (540)
T KOG1861|consen  509 SLGPQILDKNA  519 (540)
T ss_pred             ccCCccccccc
Confidence            66766665343

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=98.91  E-value=1e-08  Score=85.13  Aligned_cols=129  Identities=19%  Similarity=0.280  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhccCCCCchhhhHHHHhhhCChhhhcC-hhHHHHHHHHHHHHhCcHHHHHHHHHhC-CchHHHHHHHHh
Q 023489          114 EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS-KEMWFARQALRYFQMGNYRRFLSTVAAE-ASYLQYCIIEPY  191 (281)
Q Consensus       114 e~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~~-p~v~~Al~i~~a~~~~Ny~rFF~L~~~~-~~~L~~cll~~~  191 (281)
                      .+++.+-.++..|-..+.  .+ ....+..+|+++.++ |.++....+.+++.+++|..|+..+++. -+--..-++..+
T Consensus         3 ~~~~~~~~Ll~~L~~~~~--~d-f~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (143)
T PF10075_consen    3 NPEIYALILLKYLMQNDL--SD-FRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGF   79 (143)
T ss_dssp             -HHHHHHHHHHHHHTTTS--TH-HHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTH
T ss_pred             chhHHHHHHHHHHHcCCc--hH-HHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHH
Confidence            467888877777754442  23 233356899999994 9999999999999999999999988642 122334556778


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchHHHHHHHHhCCeeeecCCCcccc
Q 023489          192 IDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLL  250 (281)
Q Consensus       192 ~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e~~~fc~~~Gl~~~~d~~g~~~~  250 (281)
                      .+.+|...+..+.+| |.  +++++.++++||++++|+.++|+..|=++  |++|..+.
T Consensus        80 ~~~iR~~i~~~i~~a-Y~--sIs~~~la~~Lg~~~~el~~~~~~~gW~~--d~~~~~~~  133 (143)
T PF10075_consen   80 EDTIRERIAHLISKA-YS--SISLSDLAEMLGLSEEELEKFIKSRGWTV--DGDGVLFP  133 (143)
T ss_dssp             HHHHHHHHHHHHHHH--S--EE-HHHHHHHTTS-HHHHHHHHHHHT-EE-------EE-
T ss_pred             HHHHHHHHHHHHHHH-Hh--HcCHHHHHHHhCCCHHHHHHHHHHcCCEE--CCCccEEe
Confidence            899999999999997 86  69999999999999889999999999988  45566544

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=0.00031  Score=62.75  Aligned_cols=164  Identities=15%  Similarity=0.261  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhccCCCC
Q 023489           52 AINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQ  131 (281)
Q Consensus        52 ~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eql~qcl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~  131 (281)
                      |-+|||--|=..|..                  -|.+.|..-+.||+..|-|....=..++++.=+.+..+|+.+..+. 
T Consensus        55 aR~ilEi~vl~SI~t------------------~D~~sFerY~~Qlk~YY~d~~~~l~~S~~~~~l~GLnLL~LLsqNR-  115 (260)
T KOG3151|consen   55 ARDILEIGVLLSILT------------------KDFESFERYMNQLKPYYFDYNEKLSESEKKHKLLGLNLLYLLSQNR-  115 (260)
T ss_pred             HHHHHHHHHHHHHHh------------------ccHHHHHHHHHHhcchhcccccccCcchhhhHHHHHHHHHHHHhcc-
Confidence            678999888666642                  2445688999999999988765434678889999999999886554 


Q ss_pred             chhhhHHHHhhhCChhhhcC-hhHHHHHHHHHHHHhCcHHHHHHHHHhCCch-HHHHHHHHhHHHHHHHHHHHHHhhcCC
Q 023489          132 PVGESLSLWFRHVPSPIIKS-KEMWFARQALRYFQMGNYRRFLSTVAAEASY-LQYCIIEPYIDEVRSLALCCIHNCCYK  209 (281)
Q Consensus       132 ~~~~~l~~~l~~l~~~i~~~-p~v~~Al~i~~a~~~~Ny~rFF~L~~~~~~~-L~~cll~~~~~~vR~~aL~~i~~a~yk  209 (281)
                       +.+ +-..+..||..++.+ |.|+.++++=+.++.|-|-+.|...+ ..|. .-.-.|......+|..-=..+-|| |.
T Consensus       116 -iae-FHteLe~lp~~~l~~~~~I~~~v~LEq~~MEGaYnKv~~a~~-s~p~~~y~~FmdIl~~tiRdEIA~c~EKs-Yd  191 (260)
T KOG3151|consen  116 -IAE-FHTELELLPKKILQHNPYISHPVSLEQSLMEGAYNKVLSAKQ-SIPSEEYTYFMDILLDTIRDEIAGCIEKS-YD  191 (260)
T ss_pred             -HHH-HHHHHHhccHHHhhccchhhhHHHHHHHHHhhHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence             223 223377899988776 99999999999999999999998765 4554 334567777888898877777785 85


Q ss_pred             CCCcCHHHHHHHHcCC-chHHHHHHHHhCCee
Q 023489          210 LHPYPLGHLSKVLMME-ESDVELFCNAYGLQT  240 (281)
Q Consensus       210 ~~~~pl~~L~~~L~fd-d~e~~~fc~~~Gl~~  240 (281)
                        .+|++..+.+|+|+ ++|...|....+-.+
T Consensus       192 --~l~~s~a~~~L~f~~~~e~~~~~~~r~W~l  221 (260)
T KOG3151|consen  192 --KLSASDATQMLLFNNDKELKKFATERQWPL  221 (260)
T ss_pred             --hcCHHHHHHHHhcCChHHHHHHHHhcCCcc
Confidence              69999999999999 678999999998655

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=96.08  E-value=0.061  Score=41.00  Aligned_cols=72  Identities=21%  Similarity=0.385  Sum_probs=54.3

Q ss_pred             HHHHHHHHhCcHHHHHHHHHhC------CchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchHHHH
Q 023489          158 RQALRYFQMGNYRRFLSTVAAE------ASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVEL  231 (281)
Q Consensus       158 l~i~~a~~~~Ny~rFF~L~~~~------~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e~~~  231 (281)
                      .++..|+..||+..|...++.-      .+++.. .+......+|..+|..+++ .|+  ++|++.+++.|+++.++++.
T Consensus         4 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~l~~~i~~~~l~~l~~-~y~--~i~~~~ia~~l~~~~~~vE~   79 (105)
T PF01399_consen    4 SELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAE-YVEQLKEKIRRRNLRQLSK-PYS--SISISEIAKALQLSEEEVES   79 (105)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHH-HHHHHHHHHHHHHHHHHHH-C-S--EEEHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHH-HHHHHHHHHHHHHHHHHHH-Hhc--ccchHHHHHHhccchHHHHH
Confidence            4578899999999999988742      233333 5566788999999999999 476  69999999999999765544


Q ss_pred             HH
Q 023489          232 FC  233 (281)
Q Consensus       232 fc  233 (281)
                      ++
T Consensus        80 ~l   81 (105)
T PF01399_consen   80 IL   81 (105)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>KOG3252 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.64  E-value=0.94  Score=39.46  Aligned_cols=102  Identities=18%  Similarity=0.237  Sum_probs=79.4

Q ss_pred             hCChhhhcChhHHHHHHHHHHHHhCcHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHH
Q 023489          143 HVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVL  222 (281)
Q Consensus       143 ~l~~~i~~~p~v~~Al~i~~a~~~~Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L  222 (281)
                      -+++....+..++.-+.+...+.++||..|+.-.. +-+.+..- +--|=..||.-|=..+.-+ |.  .+|-..|+++|
T Consensus        87 li~~~~~~ee~~r~ii~L~~~LEt~~Fq~FW~~~~-~N~~mle~-itGFedsvr~yachvv~iT-yQ--kI~k~lLaell  161 (217)
T KOG3252|consen   87 LIDERVQMEEPFRSIIDLGDYLETCRFQQFWQEAD-ENRDMLEG-ITGFEDSVRKYACHVVGIT-YQ--KIDKWLLAELL  161 (217)
T ss_pred             hcCHHHhcccchhHHHhHHHHHhhchHHHHhhhhc-cchHHhcC-CCcHHHHHHHHHHHheech-Hh--hchHHHHHHhh
Confidence            36777788889999999999999999999998653 33332221 2235567888877777764 74  79999999999


Q ss_pred             cCC-chHHHHHHHHhCCeeeecCCCccccc
Q 023489          223 MME-ESDVELFCNAYGLQTCIDEVGNKLLP  251 (281)
Q Consensus       223 ~fd-d~e~~~fc~~~Gl~~~~d~~g~~~~~  251 (281)
                      |-- |++.+.+.+.+|-..  +++|..++.
T Consensus       162 G~~sDs~le~~~~~~GW~a--~e~G~ifv~  189 (217)
T KOG3252|consen  162 GGLSDSQLEVWMTKYGWIA--DESGQIFVA  189 (217)
T ss_pred             CcccHHHHHHHHHHcccee--cCCceEEEe
Confidence            986 789999999999977  788987775

>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.77  E-value=6.5  Score=33.16  Aligned_cols=97  Identities=16%  Similarity=0.155  Sum_probs=78.5

Q ss_pred             hhCChhhhc-ChhHHHHHHHHHHHHhCcHHHHHHHHHh-CCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHH
Q 023489          142 RHVPSPIIK-SKEMWFARQALRYFQMGNYRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLS  219 (281)
Q Consensus       142 ~~l~~~i~~-~p~v~~Al~i~~a~~~~Ny~rFF~L~~~-~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~  219 (281)
                      .++|+.|.+ .|++--|..|-.-+.+.+|...+.-++. .=+--..-+|..+-..-|.++...+..| |.  ++-.++++
T Consensus        63 KRIP~AIKe~k~El~aaWgiGQkiWq~Df~GiYeaI~~~dWSeeak~imaAf~D~~~kR~FaLl~qA-Ys--sI~~~D~A  139 (197)
T KOG4414|consen   63 KRIPPAIKEAKPELGAAWGIGQKIWQHDFAGIYEAINAHDWSEEAKDIMAAFRDATRKRAFALLLQA-YS--SIIADDFA  139 (197)
T ss_pred             HhCCHHHhhcCchhhhhhhhhHHHHhcccchHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHH
Confidence            578999876 8899999999999999999999988863 2222334455556677799999999986 75  68899999


Q ss_pred             HHHcCCchHHHHHHHHhCCeee
Q 023489          220 KVLMMEESDVELFCNAYGLQTC  241 (281)
Q Consensus       220 ~~L~fdd~e~~~fc~~~Gl~~~  241 (281)
                      -.||+.++|+....-+.|-++.
T Consensus       140 ~FlGl~~ddAtk~ilEnGWqaD  161 (197)
T KOG4414|consen  140 AFLGLPEDDATKGILENGWQAD  161 (197)
T ss_pred             HHhCCCHHHHHHHHHHcccchh
Confidence            9999999999888888898773

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.27  E-value=23  Score=33.17  Aligned_cols=146  Identities=16%  Similarity=0.236  Sum_probs=99.1

Q ss_pred             hhhcHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCChhhhcChhHHHHHHHHH
Q 023489           83 HYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALR  162 (281)
Q Consensus        83 ~~~n~eql~qcl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~~p~v~~Al~i~~  162 (281)
                      -|+..+++.+.-+...+.++--...|  +|.+.--.-|-+|.+|--... + +.+.  - +--+....+|++----++..
T Consensus       240 MHlreg~fe~AhTDFFEAFKNYDEsG--spRRttCLKYLVLANMLmkS~-i-NPFD--s-QEAKPyKNdPEIlAMTnlv~  312 (440)
T KOG1464|consen  240 MHLREGEFEKAHTDFFEAFKNYDESG--SPRRTTCLKYLVLANMLMKSG-I-NPFD--S-QEAKPYKNDPEILAMTNLVA  312 (440)
T ss_pred             cccccchHHHHHhHHHHHHhcccccC--CcchhHHHHHHHHHHHHHHcC-C-CCCc--c-cccCCCCCCHHHHHHHHHHH
Confidence            45677778888887777665443334  677788888988888622111 0 0000  0 11123456888877788899


Q ss_pred             HHHhCcHHHHHHHHHhC------CchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchHHHHHHHHh
Q 023489          163 YFQMGNYRRFLSTVAAE------ASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAY  236 (281)
Q Consensus       163 a~~~~Ny~rFF~L~~~~------~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e~~~fc~~~  236 (281)
                      |++.++...|=+.+++.      .||+--. ++-.+..+|.+.|-.+.+- |.  .+-+.++++.|..+..|.++++-.+
T Consensus       313 aYQ~NdI~eFE~Il~~~~~~IM~DpFIReh-~EdLl~niRTQVLlkLIkP-Yt--~i~Ipfis~~Lnv~~~dV~~LLV~~  388 (440)
T KOG1464|consen  313 AYQNNDIIEFERILKSNRSNIMDDPFIREH-IEDLLRNIRTQVLLKLIKP-YT--NIGIPFISKELNVPEADVESLLVSC  388 (440)
T ss_pred             HHhcccHHHHHHHHHhhhccccccHHHHHH-HHHHHHHHHHHHHHHHhcc-cc--ccCchhhHhhcCCCHHHHHHHHHHH
Confidence            99999999999999863      4454333 4456788999999888884 76  4666679999999987776666665


Q ss_pred             CCe
Q 023489          237 GLQ  239 (281)
Q Consensus       237 Gl~  239 (281)
                      =|.
T Consensus       389 ILD  391 (440)
T KOG1464|consen  389 ILD  391 (440)
T ss_pred             Hhc
Confidence            443

>smart00753 PAM PCI/PINT associated module

Probab=83.49  E-value=3.2  Score=30.77  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=38.9

Q ss_pred             HhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchHHH----HHHHHhCCeeeecCCCc
Q 023489          190 PYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVE----LFCNAYGLQTCIDEVGN  247 (281)
Q Consensus       190 ~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e~~----~fc~~~Gl~~~~d~~g~  247 (281)
                      .....+|..++..+++. |+  .++++.+++.++++.++++    +....-.+....|....
T Consensus         5 ~l~~~~~~~~l~~l~~~-y~--~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~   63 (88)
T smart00753        5 RLQRKIRLTNLLQLSEP-YS--SISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNG   63 (88)
T ss_pred             HHHHHHHHHHHHHHhHH-hc--eeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCC
Confidence            45688999999999994 76  6999999999999965544    33344344444454333

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=83.49  E-value=3.2  Score=30.77  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=38.9

Q ss_pred             HhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchHHH----HHHHHhCCeeeecCCCc
Q 023489          190 PYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVE----LFCNAYGLQTCIDEVGN  247 (281)
Q Consensus       190 ~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e~~----~fc~~~Gl~~~~d~~g~  247 (281)
                      .....+|..++..+++. |+  .++++.+++.++++.++++    +....-.+....|....
T Consensus         5 ~l~~~~~~~~l~~l~~~-y~--~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~   63 (88)
T smart00088        5 RLQRKIRLTNLLQLSEP-YS--SISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNG   63 (88)
T ss_pred             HHHHHHHHHHHHHHhHH-hc--eeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCC
Confidence            45688999999999994 76  6999999999999965544    33344344444454333

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=83.02  E-value=36  Score=32.57  Aligned_cols=96  Identities=21%  Similarity=0.281  Sum_probs=68.1

Q ss_pred             hhhhcChhHHH-------HHHHHHHHHhCcHHHHHHHHHh------CCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCC
Q 023489          146 SPIIKSKEMWF-------ARQALRYFQMGNYRRFLSTVAA------EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP  212 (281)
Q Consensus       146 ~~i~~~p~v~~-------Al~i~~a~~~~Ny~rFF~L~~~------~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~  212 (281)
                      ..|.++|+|.-       ..+...++...||..||.-+..      +......--..-|..+||.++-..+-- +||  +
T Consensus       241 tKVi~~~Evl~vl~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLE-SYr--s  317 (393)
T KOG0687|consen  241 TKVIKCPEVLEVLHKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLE-SYR--S  317 (393)
T ss_pred             hhhcCcHHHHHHhhcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHH-HHH--H
Confidence            44566776653       3445567889999999998842      112222223345788999999999988 498  5


Q ss_pred             cCHHHHHHHHcCC----chHHHHHHHHhCCeeeecC
Q 023489          213 YPLGHLSKVLMME----ESDVELFCNAYGLQTCIDE  244 (281)
Q Consensus       213 ~pl~~L~~~L~fd----d~e~~~fc~~~Gl~~~~d~  244 (281)
                      +.++.+++-+|.+    |-|+-.|.-+-.|-...|.
T Consensus       318 l~l~~MA~aFgVSVefiDreL~rFI~~grL~ckIDr  353 (393)
T KOG0687|consen  318 LTLESMAKAFGVSVEFIDRELGRFIAAGRLHCKIDR  353 (393)
T ss_pred             HHHHHHHHHhCchHHHHHhHHHHhhccCceeeeeec
Confidence            8999999999998    3578888877666665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	281
3t5v_A	316	Sac3:thp1:sem1 Complex Length = 316		1e-07

>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex Length = 316

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 24/223 (10%)
Query: 33  SQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTK 92
            + RS+RQD   QN    +A++  E+IV+ H++  H +                LEQL K
Sbjct: 38  DRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVEFSLQQ----ELEQLHK 93
Query: 93  ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-----DSNGQPVGE--------SLSL 139
           +L +L  +Y+  RSS      EAEFR++ +L  +     D N Q + +         ++L
Sbjct: 94  SLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHIFQDKLVQMAL 153
Query: 140 WFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA-SYLQYCIIEPYIDEVRSL 198
            FR V S    ++  +   +    F    Y RF   + + +   L    ++ ++ ++R  
Sbjct: 154 CFRRVISNSAYTERGFVKTENCLNF----YARFFQLMQSPSLPLLMGFFLQMHLTDIRFY 209
Query: 199 ALCCIHNCCYKLH-PYPLGHLSKVLMMEE-SDVELFCNAYGLQ 239
           AL  + +   K H P P  +L  +L+     ++  FCN Y ++
Sbjct: 210 ALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIE 252

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	3e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 316

 Score =  130 bits (327), Expect = 3e-36
 Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 28/246 (11%)

Query: 34  QTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKA 93
           + RS+RQD   QN    +A++  E+IV+ H++  H +  S    S        LEQL K+
Sbjct: 39  RMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVEFS----LQQELEQLHKS 94

Query: 94  LTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKE 153
           L +L  +Y+  RSS      EAEFR++ +L  +               + +P  I + K 
Sbjct: 95  LITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDP------QYDENIQRLPKHIFQDKL 148

Query: 154 MWFARQALRYFQ---------------MGNYRRFLSTV-AAEASYLQYCIIEPYIDEVRS 197
           +  A    R                  +  Y RF   + +     L    ++ ++ ++R 
Sbjct: 149 VQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRF 208

Query: 198 LALCCIHNCCYKLH-PYPLGHLSKVLMME-ESDVELFCNAYGLQTCIDEVGNKLLPTKQT 255
            AL  + +   K H P P  +L  +L+     ++  FCN Y ++    +  +       +
Sbjct: 209 YALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIEIINGDAADLKTLQHYS 268

Query: 256 TFCRPK 261
                 
Sbjct: 269 HKLSET 274

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 45/313 (14%), Positives = 89/313 (28%), Gaps = 92/313 (29%)

Query: 12  LLKSFAERCR----PR-KCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVIS 66
              +F   C+     R K        + T  +  D     +  D+  ++  K +      
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD---CR 314

Query: 67  HHKLRSSCSSSSISPLH-------------------YLNLEQLTKAL-TSLYNLYEANRS 106
              L       + +P                     ++N ++LT  + +SL  L      
Sbjct: 315 PQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL------ 366

Query: 107 SKPIHEKEAEFRSFYVLLHLDSNGQPVGESL--SLWF---RHVPSPIIKSKEMWFARQAL 161
                 + AE+R  +  L +      +   L   +WF   +     ++        + +L
Sbjct: 367 ------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYSL 416

Query: 162 --------RYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPY 213
                          Y      +  E + L   I++ Y +  ++            L P 
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYA-LHRSIVDHY-NIPKTF-------DSDDLIPP 467

Query: 214 P--------LG-HLSKVLMMEESDVELFCNAYGLQTCIDE--VGNKLLPTKQTTFCRPKG 262
                    +G HL  +   E   + LF   +     +D   +  K+     +T     G
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPER--MTLFRMVF-----LDFRFLEQKIRHD--STAWNASG 518

Query: 263 GLQNYSFLGFQQL 275
            + N      QQL
Sbjct: 519 SILNT----LQQL 527

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 42/283 (14%), Positives = 87/283 (30%), Gaps = 67/283 (23%)

Query: 2   EILAIHLQPLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVND----------K 51
           E+L  +  P  L   AE  R                 +   I+++ +N            
Sbjct: 321 EVLTTN--PRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 52  AINMFEKIVKF--HVIS--------------HHKLRSSC-----SSSSISPLH--YL--- 85
            +++F         ++S               +KL            S   +   YL   
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 86  ----NLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLW- 140
               N   L +++   YN+ +   S   I     ++   ++  HL +      E ++L+ 
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH--PERMTLFR 494

Query: 141 -----FRHVPSPIIKSKEMWFARQALR--YFQMGNYRRFLSTVAAEASYLQYCIIEPYID 193
                FR +   I      W A  ++     Q+  Y+ ++            C  +P  +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI------------CDNDPKYE 542

Query: 194 EVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAY 236
            + +  L  +      L       L ++ +M E +  +F  A+
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE-AIFEEAH 584

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	100.0
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	99.97
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	99.96
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	98.56
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.93
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	93.92
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	92.68
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.62
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	85.44
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	83.97
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	82.11

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-59  Score=434.78  Aligned_cols=242  Identities=22%  Similarity=0.312  Sum_probs=207.2

Q ss_pred             HHHHHHHhccCCCCccccccccccchhhhhhhhhHhccCChhHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHH
Q 023489           10 PLLLKSFAERCRPRKCGHQMCGLSQTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQ   89 (281)
Q Consensus        10 ~~ll~~~~~~~~~~~~~Y~F~i~DRlRaIRQDltvQ~i~~~~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eq   89 (281)
                      .||++.+..+   +.++|+| ||||||||||||||||+.+++||+|||+||||||+|.|+||+.+.  +|  |+++|.+|
T Consensus        19 ~yL~~~~~~~---~~~~y~f-i~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~~~--~f--~~~~~~eQ   90 (316)
T 3t5v_A           19 DYIVDNLLTT---LPESEGF-LWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNV--EF--SLQQELEQ   90 (316)
T ss_dssp             HHHHHHTGGG---TTTCHHH-HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHSCC--CC--CHHHHHHH
T ss_pred             HHHHHHHHhc---chhhhHH-HHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhhCCC--cc--chHHHHHH
Confidence            3455554443   5689999 999999999999999999999999999999999999999998753  36  68999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCChhhhcChhHHHHHHHHHHHH----
Q 023489           90 LTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQ----  165 (281)
Q Consensus        90 l~qcl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~i~~~p~v~~Al~i~~a~~----  165 (281)
                      +++||++|+++|++.++.|..||||+||+||+||+++++++.      ...+.++|++++++|.||+|+++.+|+.    
T Consensus        91 l~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~~~~------~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~  164 (316)
T 3t5v_A           91 LHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQY------DENIQRLPKHIFQDKLVQMALCFRRVISNSAY  164 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTCTHH------HHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhccchH------HHHHHhCCHHHhcCHHHHHHHHHHHHHHhccc
Confidence            999999999999999888889999999999999999987641      2346789999999999999999999996    


Q ss_pred             -----------hCcHHHHHHHHHh-CCchHHHHHHHHhHHHHHHHHHHHHHhhcCC--CCCcCHHHHHHHHcCCc-hHHH
Q 023489          166 -----------MGNYRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYK--LHPYPLGHLSKVLMMEE-SDVE  230 (281)
Q Consensus       166 -----------~~Ny~rFF~L~~~-~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk--~~~~pl~~L~~~L~fdd-~e~~  230 (281)
                                 .|||+|||+|+++ ++|||++|+|+.||+++|..||++|++| |+  ..++|+++|+++|+|++ +|+.
T Consensus       165 ~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~ka-y~~k~~~~pl~~L~~~L~Fds~ee~~  243 (316)
T 3t5v_A          165 TERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHT-LNKKHKPIPFIYLENMLLFNNRQEII  243 (316)
T ss_dssp             CCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHH-SCTTCCCEEHHHHHHHTTCSSHHHHH
T ss_pred             ccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCcCHHHHHHHhCCCCHHHHH
Confidence                       4899999999975 3899999999999999999999999997 74  25899999999999985 7899


Q ss_pred             HHHHHhCCeeeecCCCccc-cccCcccccCCcCccccc
Q 023489          231 LFCNAYGLQTCIDEVGNKL-LPTKQTTFCRPKGGLQNY  267 (281)
Q Consensus       231 ~fc~~~Gl~~~~d~~g~~~-~~~k~s~f~~p~~~~~~~  267 (281)
                      +||++||++++.+ +|... ..+.++.|.+++.++++.
T Consensus       244 ~F~~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~  280 (316)
T 3t5v_A          244 EFCNYYSIEIING-DAADLKTLQHYSHKLSETQPLKKT  280 (316)
T ss_dssp             HHHHHTTCCEETT-TEECGGGCCCSSSSCTTSCCCCCC
T ss_pred             HHHHHCCCeEeCC-CCchHHhhcchhccccccCCCcch
Confidence            9999999999843 45433 124556666666555533

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=99.97  E-value=3.4e-29  Score=222.65  Aligned_cols=191  Identities=15%  Similarity=0.228  Sum_probs=162.9

Q ss_pred             cccccccchhhhhhhhhHhccC--------ChhHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHHHHHHHHHHH
Q 023489           27 HQMCGLSQTRSVRQDLIMQNIV--------NDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLY   98 (281)
Q Consensus        27 Y~F~i~DRlRaIRQDltvQ~i~--------~~~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eql~qcl~~L~   98 (281)
                      |+. .++.++.||+|||.|++.        ...|.+|||.+||++|..                  .+.+++++|+++|+
T Consensus        23 ~~~-~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~------------------~D~~~F~~~~~qLk   83 (229)
T 4b0z_A           23 WNA-CKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQT------------------CDIESFARYASQVI   83 (229)
T ss_dssp             HHH-HHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHH
Confidence            889 599999999999999983        246899999999999842                  36788999999999


Q ss_pred             HHHHhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCChh--hhcChhHHHHHHHHHHHHhCcHHHHHHHH
Q 023489           99 NLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSP--IIKSKEMWFARQALRYFQMGNYRRFLSTV  176 (281)
Q Consensus        99 ~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~~~--i~~~p~v~~Al~i~~a~~~~Ny~rFF~L~  176 (281)
                      .+|.+..   ..++++.||.||+||+.+..++  +.+ +...+..+|++  +.++|.|++|+++.+|++.|||.+||+++
T Consensus        84 ~~Y~~~~---~~s~~~~e~~~~~LL~lL~~~~--~~e-f~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~  157 (229)
T 4b0z_A           84 PFYHDSL---VPSSRMGLVTGLNLLYLLSENR--IAE-FHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMI  157 (229)
T ss_dssp             HHHSSCC---CCCTTHHHHHHHHHHHHHHTTC--HHH-HHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHccC---CCCccHHHHHHHHHHHHHHcCC--chH-HHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9998753   3578999999999999987665  233 34457778754  57899999999999999999999999998


Q ss_pred             HhCCch-HHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCc-hHHHHHHHHhCCeeeecCCCccc
Q 023489          177 AAEASY-LQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKL  249 (281)
Q Consensus       177 ~~~~~~-L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd-~e~~~fc~~~Gl~~~~d~~g~~~  249 (281)
                      + ++|. ..+|+++.+++++|..++..|.+| |.  ++|+++++++|+|++ +|+.+||+.+|..+.   +|.++
T Consensus       158 ~-~~p~~~~~~~~~~l~~~vR~~~l~~i~ka-Y~--~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~---dg~i~  225 (229)
T 4b0z_A          158 R-SCNFPEFSYFMKIVMSMVRNEIATCAEKV-YS--EIPLSNATSLLYLENTKETEKLAEERGWDIR---DGVIY  225 (229)
T ss_dssp             H-TCCCGGGHHHHHHHHHHHHHHHHHHHHHH-CS--EEEHHHHHHHTTCSSHHHHHHHHHHHTCEEE---TTEEE
T ss_pred             h-cCccchHHHHHHHHHHHHHHHHHHHHHHH-cC--CCCHHHHHHHhCCCCHHHHHHHHHHcCCEEe---CCEEe
Confidence            6 5654 459999999999999999999996 84  699999999999995 789999999999984   45543

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.5e-29  Score=226.74  Aligned_cols=191  Identities=13%  Similarity=0.164  Sum_probs=140.0

Q ss_pred             ccccccccchhhhhhhhhHhccCCh--------------hHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHHHH
Q 023489           26 GHQMCGLSQTRSVRQDLIMQNIVND--------------KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLT   91 (281)
Q Consensus        26 ~Y~F~i~DRlRaIRQDltvQ~i~~~--------------~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eql~   91 (281)
                      -|+- ..+.+..++++||.|++-.+              .|.+|||.+||+.|.                  +.|.++|+
T Consensus        19 d~~~-~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~------------------~~D~~~F~   79 (274)
T 4b4t_T           19 DYAA-CEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQ------------------TFNFDSFE   79 (274)
T ss_dssp             -------------------------------------------CHHHHHHCCSS------------------CSSHHHHH
T ss_pred             CHHH-HHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH------------------cCCHHHHH
Confidence            3678 49999999999999987421              266899999999873                  24788999


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhccCCCCchhhhHHHHhhhCC---hhhhcChhHHHHHHHHHHHHhCc
Q 023489           92 KALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVP---SPIIKSKEMWFARQALRYFQMGN  168 (281)
Q Consensus        92 qcl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~---~~i~~~p~v~~Al~i~~a~~~~N  168 (281)
                      +|+++|+.+|.+.+..+..++|+.||.||+|||.+..++.  .+ +...+..+|   +++.++|.|++|+++.+|+..||
T Consensus        80 ~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~--~e-fh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGn  156 (274)
T 4b4t_T           80 NYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNT--TK-FHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGS  156 (274)
T ss_dssp             HHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCS--TH-HHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCH--HH-HHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCC
Confidence            9999999999998766667899999999999999854432  22 223356676   46788999999999999999999


Q ss_pred             HHHHHHHHHh--CCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCc-hHHHHHHHHhCCeee
Q 023489          169 YRRFLSTVAA--EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQTC  241 (281)
Q Consensus       169 y~rFF~L~~~--~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd-~e~~~fc~~~Gl~~~  241 (281)
                      |.+||+++++  ..+++.+|+|+.+++++|..|+..|.|| |+  ++|++.++++|+|++ +|+.+|++.+|.++.
T Consensus       157 Y~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~ka-Y~--~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~  229 (274)
T 4b4t_T          157 YQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELS-YD--FLPLSNIKALLFFNNEKETEKFALERNWPIV  229 (274)
T ss_dssp             SHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-CS--SCCHHHHHHHHTCCSHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--hcCHHHHHHHhCCCCHHHHHHHHHHcCCEEe
Confidence            9999999875  2357889999999999999999999996 85  699999999999995 789999999999884

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18

Probab=98.56  E-value=1.5e-06  Score=76.63  Aligned_cols=167  Identities=16%  Similarity=0.183  Sum_probs=115.7

Q ss_pred             ChhHHHHHHHHHHHHHHhhhhhhccCCCCCCChhhhhcHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhccC
Q 023489           49 NDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDS  128 (281)
Q Consensus        49 ~~~~i~vlE~~aRf~i~s~~~L~~~~~~~~f~~~~~~n~eql~qcl~~L~~lY~~~~~~g~~~~ne~EF~aY~iL~~l~~  128 (281)
                      |+..+.++|+-+.-...       .+   .|  |       +.-.++ |..+|.-.     +.....+..+..+|..|-+
T Consensus        22 np~~l~~le~Yv~qq~~-------~~---~Y--D-------~~anla-lLklYq~~-----p~~~~~~ii~~iLlk~L~~   76 (226)
T 1rz4_A           22 NPENLATLERYVETQAK-------EN---AY--D-------LEANLA-VLKLYQFN-----PAFFQTTVTAQILLKALTN   76 (226)
T ss_dssp             CGGGHHHHHHHHHHHHH-------HT---CC--C-------HHHHHH-HHHHHHHS-----GGGCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHh-------cc---cc--c-------HHHHHH-HHHHHhcC-----CcccchhHHHHHHHHHHHc
Confidence            56788888887765442       11   13  2       222233 34445432     2334578899988887754


Q ss_pred             CCCchhhhHHHHhhhCChhhhcChhHHHHHHHHHHHHhCcHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 023489          129 NGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCY  208 (281)
Q Consensus       129 ~~~~~~~~l~~~l~~l~~~i~~~p~v~~Al~i~~a~~~~Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~y  208 (281)
                      ...  .+ +...+.-+|+++..+|.|+..+.+.+.+.+|||.+||+.+++ .+-+ ...+.-+.+.+|......+.+| |
T Consensus        77 ~p~--~D-F~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-~~~l-~~~i~gf~dsIR~~I~~~i~~a-Y  150 (226)
T 1rz4_A           77 LPH--TD-FTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDE-NMDL-LEGITGFEDSVRKFICHVVGIT-Y  150 (226)
T ss_dssp             TTS--TH-HHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCT-TCHH-HHTSTTHHHHHHHHHHHHHHHH-C
T ss_pred             CCH--HH-HHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-ChhH-HHHHhHHHHHHHHHHHHHHHHH-H
Confidence            432  23 222334479999999999999999999999999999998753 2211 1223337788999999999996 8


Q ss_pred             CCCCcCHHHHHHHHcCC-chHHHHHHHHhCCeeeecCCCcccc
Q 023489          209 KLHPYPLGHLSKVLMME-ESDVELFCNAYGLQTCIDEVGNKLL  250 (281)
Q Consensus       209 k~~~~pl~~L~~~L~fd-d~e~~~fc~~~Gl~~~~d~~g~~~~  250 (281)
                      .  ++|++.++++||+. +.++.+|++..|=++  |++|.+++
T Consensus       151 ~--sI~~~~la~lLg~~s~~el~~fi~~~GW~v--d~~g~I~~  189 (226)
T 1rz4_A          151 Q--HIDRWLLAEMLGDLSDSQLKVWMSKYGWSA--DESGQIFI  189 (226)
T ss_dssp             S--EECHHHHHHHTTSCCHHHHHHHHHHHTCEE--CC--CEEC
T ss_pred             h--hCCHHHHHHHHcCCCHHHHHHHHHHCCCEE--CCCccEEe
Confidence            6  68999999999764 678999999999987  56676644

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.93  E-value=0.094  Score=49.46  Aligned_cols=125  Identities=9%  Similarity=0.117  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHhccCCCCchhhhHHHHhhhCC-hhhhcChhHHHHHHHHHHHHhCcHHHHHHHHHh------CCchHHHH
Q 023489          114 EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVP-SPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA------EASYLQYC  186 (281)
Q Consensus       114 e~EF~aY~iL~~l~~~~~~~~~~l~~~l~~l~-~~i~~~p~v~~Al~i~~a~~~~Ny~rFF~L~~~------~~~~L~~c  186 (281)
                      ...+.-|.+|..|-..+.  .+ +...+.+ + ...+.+|.+.....+..|+..+++.+|++.+..      ..+++..+
T Consensus       219 ~~~~lkYlvL~aLl~~~r--~e-l~~~l~~-~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h  294 (394)
T 3txn_A          219 ALTSLKYMLLCKIMLGQS--DD-VNQLVSG-KLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAH  294 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCG--GG-HHHHHHS-HHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCH--HH-HHHHhcc-ccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHH
Confidence            345668888888755442  11 2211110 0 011368999989999999999999999998864      24555443


Q ss_pred             HHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchH----HHHHHHHhCCeeeecCCC
Q 023489          187 IIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESD----VELFCNAYGLQTCIDEVG  246 (281)
Q Consensus       187 ll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e----~~~fc~~~Gl~~~~d~~g  246 (281)
                      + ......||..+|..+.+. |.  .++++.+++.|+.+.++    +..+...--+.-..|..+
T Consensus       295 ~-~~L~~~Ir~~~L~~i~~p-Ys--rIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~  354 (394)
T 3txn_A          295 L-GTLYDTMLEQNLCRIIEP-YS--RVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGE  354 (394)
T ss_dssp             H-HHHHHHHHHHHHHHHHTT-CS--EEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTT
T ss_pred             H-HHHHHHHHHHHHHHHhHh-hc--eeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCC
Confidence            3 446678999999999994 86  69999999999998544    445555555544445433

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.92  E-value=0.73  Score=43.01  Aligned_cols=120  Identities=17%  Similarity=0.213  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHhcc-CCC-CchhhhHHHHhhhCC--hhhhcChhHHHHHHHHHHHHhCcHHHHHHHHHh---CCchHHHH
Q 023489          114 EAEFRSFYVLLHLD-SNG-QPVGESLSLWFRHVP--SPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA---EASYLQYC  186 (281)
Q Consensus       114 e~EF~aY~iL~~l~-~~~-~~~~~~l~~~l~~l~--~~i~~~p~v~~Al~i~~a~~~~Ny~rFF~L~~~---~~~~L~~c  186 (281)
                      |..-.+|.++..+- .++ ...++.+     ..|  .++..+|....-.++..++..|++..|...+++   ..|++...
T Consensus       209 ~~~~~a~~l~~~all~~~i~~f~eLL-----~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~  283 (393)
T 4b4t_O          209 ERQQLAYDLSISALLGDKIYNFGELL-----HHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQH  283 (393)
T ss_dssp             HHHHHHHHHHHHHHHCCSSCSTHHHH-----HSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCChHHHh-----CChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhh
Confidence            34455777777642 222 1233322     223  223456666667889999999999999986542   35555433


Q ss_pred             HHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCCchHHHHH---HHHhCCee
Q 023489          187 IIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELF---CNAYGLQT  240 (281)
Q Consensus       187 ll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fdd~e~~~f---c~~~Gl~~  240 (281)
                      . .....++|..+|..++.+ .....+|.+.+++.|+.+.+|++.+   +-.-|+.-
T Consensus       284 ~-~~l~~kirll~l~~l~~~-~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~  338 (393)
T 4b4t_O          284 E-SFLRQKICLMTLIETVFV-KNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLK  338 (393)
T ss_dssp             H-HHHHHHHHHHHHHHHHCS-SSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSS
T ss_pred             H-HHHHHHHHHHHHHHHhcc-CCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEE
Confidence            2 234678999999888753 3234799999999999995554333   44556544

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=92.68  E-value=0.31  Score=41.56  Aligned_cols=103  Identities=18%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             HHHHHHHHhCcHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcC---CCCCcCHHHHHHHHcCC------chH
Q 023489          158 RQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCY---KLHPYPLGHLSKVLMME------ESD  228 (281)
Q Consensus       158 l~i~~a~~~~Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~y---k~~~~pl~~L~~~L~fd------d~e  228 (281)
                      ..+..|++.||...|=+.+......+..+=+..-+.++|..+++.+.|--+   +...+|++.++..|.++      ++|
T Consensus        84 ~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~e  163 (203)
T 3t5x_A           84 AEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDE  163 (203)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHH
Confidence            378899999999999998875333333332233468888888877765211   23479999999999863      234


Q ss_pred             H---HHHHHHhCCee-eecCCCccccccCcccccCC
Q 023489          229 V---ELFCNAYGLQT-CIDEVGNKLLPTKQTTFCRP  260 (281)
Q Consensus       229 ~---~~fc~~~Gl~~-~~d~~g~~~~~~k~s~f~~p  260 (281)
                      +   ..-+-.-|..- ..+.+...++..|+.+|..-
T Consensus       164 vE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pFP~l  199 (203)
T 3t5x_A          164 VQCILANLIYMGHVKGYISHQHQKLVVSKQNPFPPL  199 (203)
T ss_dssp             HHHHHHHHHHHTSSCEEEETTTTEEEECSSCSSCCG
T ss_pred             HHHHHHHHHHcCceEEEEcccccEEEECCCCCCCCc
Confidence            3   33334444432 33444444454577777543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.62  E-value=0.32  Score=45.82  Aligned_cols=93  Identities=15%  Similarity=0.252  Sum_probs=70.6

Q ss_pred             ChhHHHHHHHHHHHHhCcHHHHHHHHHh-------CCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHc
Q 023489          151 SKEMWFARQALRYFQMGNYRRFLSTVAA-------EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM  223 (281)
Q Consensus       151 ~p~v~~Al~i~~a~~~~Ny~rFF~L~~~-------~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~  223 (281)
                      .|.++-..++..++..++|..||..+..       ..+|+..++ ..+...||.+++..+.+ .|+  .+.++.+++.||
T Consensus       283 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~-~~l~~~ir~~~l~q~~~-~Ys--~I~l~~mA~~l~  358 (429)
T 4b4t_R          283 TAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHA-DFFVREMRRKVYAQLLE-SYK--TLSLKSMASAFG  358 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTH-HHHHHHHHHHHHHHHHH-TCS--EEEHHHHHHHHT
T ss_pred             ChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHH-HHHHHHHHHHHHHHHhH-Hhc--eeeHHHHHHHhC
Confidence            4666667788899999999999986432       245666554 34778999999999999 486  699999999999


Q ss_pred             CCch----HHHHHHHHhCCeeeecCCCc
Q 023489          224 MEES----DVELFCNAYGLQTCIDEVGN  247 (281)
Q Consensus       224 fdd~----e~~~fc~~~Gl~~~~d~~g~  247 (281)
                      .+.+    ++..+...--+....|.-+.
T Consensus       359 ~s~~~~E~~L~~lI~~g~l~akID~~~g  386 (429)
T 4b4t_R          359 VSVAFLDNDLGKFIPNKQLNCVIDRVNG  386 (429)
T ss_dssp             SCHHHHHHHHHHHHHHTSSCEEEETTTT
T ss_pred             cCHHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence            9953    36677777777776665433

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}

Probab=85.44  E-value=2.7  Score=34.72  Aligned_cols=79  Identities=18%  Similarity=0.195  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhCcHHHHHHHHHhCCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCC-chHHHHHH
Q 023489          155 WFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMME-ESDVELFC  233 (281)
Q Consensus       155 ~~Al~i~~a~~~~Ny~rFF~L~~~~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fd-d~e~~~fc  233 (281)
                      ..-.++...|..|+|..|-.. ++..|-|.    ..-..++|.-+|-.++..   ...+|.+.+++.|+.+ ..|.+.|.
T Consensus        60 ~~~~~LL~iF~~G~~~~y~~~-~~~~p~L~----~~~~~KlrlLtL~sLa~~---~~~lsy~~I~~~l~i~~~~evE~lv  131 (169)
T 3chm_A           60 SVYLDLLRLFAHGTWGDYKCN-ATRLPHLS----PDQILKLKQLTVLTLAES---NKVLPYDTLMVELDVSNVRELEDFL  131 (169)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHH-GGGSCCCC----HHHHHHHHHHHHHHHHHH---CSEEEHHHHHHHHTCCSHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCHHHHHHh-HHhCcchH----HHHHHHHHHHHHHHHHHh---CCCcCHHHHHHHhCCCCHHHHHHHH
Confidence            446788999999999999874 44556554    445688999999999863   3479999999999999 56777766


Q ss_pred             H----HhCCeee
Q 023489          234 N----AYGLQTC  241 (281)
Q Consensus       234 ~----~~Gl~~~  241 (281)
                      -    +.|+.-.
T Consensus       132 I~~ai~~gLI~g  143 (169)
T 3chm_A          132 INECMYAGIVRG  143 (169)
T ss_dssp             HHTHHHHTSEEE
T ss_pred             HHHHHHhCCeEE
Confidence            5    4677653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.97  E-value=22  Score=31.41  Aligned_cols=81  Identities=14%  Similarity=0.189  Sum_probs=59.3

Q ss_pred             cChhHHHHHHHHHHHHhCcHHHHHHHHHh------CCchHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHc
Q 023489          150 KSKEMWFARQALRYFQMGNYRRFLSTVAA------EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM  223 (281)
Q Consensus       150 ~~p~v~~Al~i~~a~~~~Ny~rFF~L~~~------~~~~L~~cll~~~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~  223 (281)
                      ..|.+..-..+..++..+++..|.+.+..      ..+++.. ........+|..++..+.+ .|.  .++++.+++.|+
T Consensus       292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~l~~~~~-~y~--~i~l~~la~~l~  367 (434)
T 4b4t_Q          292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRS-HFNALYDTLLESNLCKIIE-PFE--CVEISHISKIIG  367 (434)
T ss_dssp             CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHH-HHHHHHHHHHHHHHHHHHS-SCS--CEEHHHHHHHHT
T ss_pred             cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHHHHHHHHHH-HHH--hcCHHHHHHHhC
Confidence            45666666777889999999999887653      1333333 3445667899999999998 475  699999999999


Q ss_pred             CCchHHHHHHH
Q 023489          224 MEESDVELFCN  234 (281)
Q Consensus       224 fdd~e~~~fc~  234 (281)
                      .+.++++.++.
T Consensus       368 ~~~~~~E~~l~  378 (434)
T 4b4t_Q          368 LDTQQVEGKLS  378 (434)
T ss_dssp             CCHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            99666554443

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=82.11  E-value=6.1  Score=37.70  Aligned_cols=84  Identities=7%  Similarity=0.086  Sum_probs=54.7

Q ss_pred             hhhCCh-hhhcC---hhHHH-HHHHHHHHHhCcHHHHHHHHHhC-CchHHHHHHHHhHHHHHHHHHHHHHh-------hc
Q 023489          141 FRHVPS-PIIKS---KEMWF-ARQALRYFQMGNYRRFLSTVAAE-ASYLQYCIIEPYIDEVRSLALCCIHN-------CC  207 (281)
Q Consensus       141 l~~l~~-~i~~~---p~v~~-Al~i~~a~~~~Ny~rFF~L~~~~-~~~L~~cll~~~~~~vR~~aL~~i~~-------a~  207 (281)
                      +.++|+ ++++.   |.+.- =..+..|++.||...|=+.+... ..++..-++...+.++|..+++.+.|       ..
T Consensus       278 lG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~  357 (455)
T 3t5v_B          278 LGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTE  357 (455)
T ss_dssp             TTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344554 35554   44432 35789999999999999988753 33333333255566777665554443       13


Q ss_pred             CCCCCcCHHHHHHHHcC
Q 023489          208 YKLHPYPLGHLSKVLMM  224 (281)
Q Consensus       208 yk~~~~pl~~L~~~L~f  224 (281)
                      |++..+|++.++..|.+
T Consensus       358 ~~~srI~l~~i~~aL~~  374 (455)
T 3t5v_B          358 WGQNKLPYSLIERVLQL  374 (455)
T ss_dssp             TCCCEEEHHHHHHHHHH
T ss_pred             CCCCeeeHHHHHHHHhh
Confidence            66678999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1rz4a1	85	Eukaryotic translation initiation factor 3 subunit	95.88

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0096  Score=42.50  Aligned_cols=65  Identities=23%  Similarity=0.365  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHcCC-chHHHHHHHHhCCeeeecCCCccccccCcccccCCc
Q 023489          191 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMME-ESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPK  261 (281)
Q Consensus       191 ~~~~vR~~aL~~i~~a~yk~~~~pl~~L~~~L~fd-d~e~~~fc~~~Gl~~~~d~~g~~~~~~k~s~f~~p~  261 (281)
                      |-+.+|..+...+..+ |+  .+|...|++|||.. |++.+.|++.+|=++  +++|.+++ ..|-...-|+
T Consensus         3 FedsIR~~i~~vv~iT-yq--~I~~~~L~e~LG~~~d~~L~~~i~~~gW~~--~~~g~v~v-~nqe~~iK~k   68 (85)
T d1rz4a1           3 FEDSVRKFICHVVGIT-YQ--HIDRWLLAEMLGDLSDSQLKVWMSKYGWSA--DESGQIFI-CSQEESIKPK   68 (85)
T ss_dssp             HHHHHHHHHHHHHHHH-CS--EECHHHHHHHTTSCCHHHHHHHHHHHTCEE--CC--CEEC-CCHHHHTSCC
T ss_pred             HHHHHHHHHHhheeee-ee--EEcHHHHHHHhCCCCHHHHHHHHHHcCCEE--cCCCEEEe-cChhhhcCcc
Confidence            4467999999999996 86  79999999999986 678999999999988  44566654 3554444443