Citrus Sinensis ID: 023510

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
MLFQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDLVSSF
cccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccHHHHcHHHHHcccccccccHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
ccccccccHHHcccccccccHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccEccEEcccccHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHccEEEHHHcHHHHHcHHHcccccccccHHHHHHHHHHcccccccccEEEcccccccccccHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHccccEcccccEcccccccccccccccEEEEccccccEccc
mlfqgcdasilldnttTIVSEkfaapnnnsargfEVVDDMKAAVEracpgvvsCADILTIAAEQSvalsggpswtnllgrrdsrtanrtlanenlpgpnnsleRLKDRfrnvglndnfdlvalsgahtfgraqcrtfsdrlfnfnstgnpdptlNTTLLQQLRQlcpqggngsvltnldvttpdvfdnkyffNLQIHKGllqsdqelfstpgadTAAIVNNFGRNQTAFFENFVTSMIrmgnlkpltgnqgeirlncrrvngnsniatrssssegdlvssf
mlfqgcdasilldnTTTIVSEkfaapnnnsaRGFEVVDDMKAAVERACPGVVSCADILTIAAEQsvalsggpswtnllGRRDSRTAnrtlanenlpgpnnslERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNLkpltgnqgeirlncrrvngnsniatrssssegdlvssf
MLFQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPtlnttllqqlrqlCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDLVSSF
****GCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLL*****************************RFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNLKPLTGNQGEIRLNCRR**********************
MLFQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCP**GNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNLKPLTGNQGEIRLNCRRVNG************GDLVS**
MLFQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIA**************
****GCDASILLDNTTTIVSEKFA***NNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSS**********
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MLFQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDLVSSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query281 2.2.26 [Sep-21-2011]
Q9LEH3327 Peroxidase 15 OS=Ipomoea N/A no 0.911 0.782 0.717 1e-100
Q42578335 Peroxidase 53 OS=Arabidop yes no 0.918 0.770 0.660 1e-95
P80679305 Peroxidase A2 OS=Armoraci N/A no 0.914 0.842 0.639 8e-92
Q9FG34358 Peroxidase 54 OS=Arabidop no no 0.950 0.745 0.611 1e-91
P24102349 Peroxidase 22 OS=Arabidop no no 0.918 0.739 0.643 4e-91
P15233332 Peroxidase C1C (Fragment) N/A no 0.925 0.783 0.655 2e-90
P00433353 Peroxidase C1A OS=Armorac N/A no 0.925 0.736 0.647 6e-90
Q9LDA4346 Peroxidase 38 OS=Arabidop no no 0.932 0.757 0.600 5e-89
P15232351 Peroxidase C1B OS=Armorac N/A no 0.925 0.740 0.647 5e-89
P17180349 Peroxidase C3 OS=Armoraci N/A no 0.918 0.739 0.643 7e-89
>sp|Q9LEH3|PER15_IPOBA Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1 Back     alignment and function desciption
 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/258 (71%), Positives = 208/258 (80%), Gaps = 2/258 (0%)

Query: 5   GCDASILLDNT-TTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAE 63
           GCD S+LLDN  TTIVSEK A PN NS RGF+VVD++K AVE ACPGVVSC DIL +A+E
Sbjct: 71  GCDGSLLLDNNGTTIVSEKDALPNTNSTRGFDVVDNIKTAVENACPGVVSCVDILALASE 130

Query: 64  QSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVAL 123
            SV+L+GGPSW  LLGRRD RTAN+  AN +LP P  +L  L  +F NVGLN N DLVAL
Sbjct: 131 SSVSLAGGPSWNVLLGRRDRRTANQGGANTSLPSPFENLTNLTQKFTNVGLNVN-DLVAL 189

Query: 124 SGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTP 183
           SGAHTFGRAQCRTFS RLFNF++TGNPDPTLNTT L  L+Q+CPQGG+G  +TNLD TTP
Sbjct: 190 SGAHTFGRAQCRTFSPRLFNFSNTGNPDPTLNTTYLATLQQICPQGGSGFTVTNLDPTTP 249

Query: 184 DVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNL 243
           D FDN YF NLQ ++GLLQSDQELFST GA T AIVNNF  NQTAFFE+FV SMI MGN+
Sbjct: 250 DTFDNNYFSNLQTNRGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNI 309

Query: 244 KPLTGNQGEIRLNCRRVN 261
            PLTG+ GEIR NCRR N
Sbjct: 310 SPLTGSNGEIRSNCRRPN 327
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Ipomoea batatas (taxid: 4120)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q42578|PER53_ARATH Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1 Back     alignment and function description
>sp|P80679|PERA2_ARMRU Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FG34|PER54_ARATH Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1 Back     alignment and function description
>sp|P24102|PER22_ARATH Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2 Back     alignment and function description
>sp|P15233|PER1C_ARMRU Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1 Back     alignment and function description
>sp|P00433|PER1A_ARMRU Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2 Back     alignment and function description
>sp|Q9LDA4|PER38_ARATH Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=3 SV=1 Back     alignment and function description
>sp|P15232|PER1B_ARMRU Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1 Back     alignment and function description
>sp|P17180|PER3_ARMRU Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
110007377350 peroxidase [Citrus maxima] 0.978 0.785 0.753 1e-111
109809965346 rubber peroxidase 1 [Hevea brasiliensis] 0.967 0.786 0.714 1e-108
255587906271 Peroxidase C3 precursor, putative [Ricin 0.918 0.952 0.759 1e-108
118484904354 unknown [Populus trichocarpa] gi|2256262 0.914 0.725 0.747 1e-105
1279654345 peroxidase [Populus trichocarpa] 0.914 0.744 0.747 1e-105
2129513347 peroxidase (EC 1.11.1.7) A3a precursor - 0.925 0.749 0.734 1e-104
485393308 peroxidase [Populus kitakamiensis] 0.925 0.844 0.734 1e-104
224076042349 predicted protein [Populus trichocarpa] 0.925 0.744 0.736 1e-104
115345276321 peroxidase [Populus alba] 0.960 0.841 0.707 1e-102
19569160347 apoplastic anionic gaiacol peroxidase [G 0.967 0.783 0.695 1e-102
>gi|110007377|gb|ABG49115.1| peroxidase [Citrus maxima] Back     alignment and taxonomy information
 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/280 (75%), Positives = 231/280 (82%), Gaps = 5/280 (1%)

Query: 5   GCDASILLDNT---TTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIA 61
           GCD SILLDN    T+I SEKF+  NNNSARGFEVVD MK A+E ACPG+VSCADIL IA
Sbjct: 73  GCDGSILLDNVANDTSIDSEKFSMANNNSARGFEVVDAMKTALESACPGIVSCADILAIA 132

Query: 62  AEQSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLV 121
           +EQSV LSGGPSWT  LGRRD RTANR+LA++NLP P  +L+ LK RFRNVGLNDN DLV
Sbjct: 133 SEQSVNLSGGPSWTVPLGRRDGRTANRSLADQNLPTPFQTLDLLKGRFRNVGLNDNTDLV 192

Query: 122 ALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVT 181
           ALSGAHTFGRAQC+ FS RLFNFN TGNPDPTLN TLL QL+QLCPQGGNGSVLTNLD++
Sbjct: 193 ALSGAHTFGRAQCQFFSQRLFNFNGTGNPDPTLNATLLAQLQQLCPQGGNGSVLTNLDLS 252

Query: 182 TPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMG 241
           TPD FDN YF NLQ + GLLQSDQELFST GADT  IVNNF  N+TAFFE+F  SMIRMG
Sbjct: 253 TPDGFDNDYFSNLQANNGLLQSDQELFSTSGADTIPIVNNFSSNETAFFESFAVSMIRMG 312

Query: 242 NLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDLVSSF 281
           NL  LTG QGEIR NCRRVN N N++T  SSS+G LVSS 
Sbjct: 313 NLSLLTGTQGEIRSNCRRVNAN-NLSTI-SSSDGGLVSSI 350

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|109809965|gb|ABG46370.1| rubber peroxidase 1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255587906|ref|XP_002534437.1| Peroxidase C3 precursor, putative [Ricinus communis] gi|223525298|gb|EEF27947.1| Peroxidase C3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118484904|gb|ABK94318.1| unknown [Populus trichocarpa] gi|225626271|gb|ACN97185.1| peroxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|1279654|emb|CAA66037.1| peroxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|2129513|pir||S60054 peroxidase (EC 1.11.1.7) A3a precursor - Japanese aspen x large-toothed aspen gi|1255661|dbj|BAA07240.1| peroidase precursor [Populus sieboldii x Populus grandidentata] Back     alignment and taxonomy information
>gi|485393|dbj|BAA06335.1| peroxidase [Populus kitakamiensis] Back     alignment and taxonomy information
>gi|224076042|ref|XP_002304885.1| predicted protein [Populus trichocarpa] gi|222842317|gb|EEE79864.1| predicted protein [Populus trichocarpa] gi|225626269|gb|ACN97184.1| peroxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|115345276|dbj|BAF33314.1| peroxidase [Populus alba] Back     alignment and taxonomy information
>gi|19569160|gb|AAL92037.1|AF488305_1 apoplastic anionic gaiacol peroxidase [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
UNIPROTKB|Q9LEH3327 pod "Peroxidase 15" [Ipomoea b 0.911 0.782 0.686 1.5e-90
TAIR|locus:2170204335 PA2 "peroxidase 2" [Arabidopsi 0.918 0.770 0.625 3.4e-84
TAIR|locus:2170214358 AT5G06730 [Arabidopsis thalian 0.939 0.737 0.590 2.2e-80
TAIR|locus:2057180349 AT2G38380 [Arabidopsis thalian 0.918 0.739 0.616 7.6e-80
TAIR|locus:2138278346 AT4G08780 [Arabidopsis thalian 0.932 0.757 0.581 1.4e-78
TAIR|locus:2057165349 AT2G38390 [Arabidopsis thalian 0.918 0.739 0.604 2.7e-77
TAIR|locus:2138273346 Prx37 "peroxidase 37" [Arabido 0.932 0.757 0.585 5.5e-77
TAIR|locus:2101298354 PRXCA "peroxidase CA" [Arabido 0.925 0.734 0.605 7.1e-77
TAIR|locus:2097273352 AT3G32980 [Arabidopsis thalian 0.925 0.738 0.593 8.1e-76
TAIR|locus:2101318353 PRXCB "peroxidase CB" [Arabido 0.925 0.736 0.597 1.3e-75
UNIPROTKB|Q9LEH3 pod "Peroxidase 15" [Ipomoea batatas (taxid:4120)] Back     alignment and assigned GO terms
 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 177/258 (68%), Positives = 198/258 (76%)

Query:     5 GCDASILLDNT-TTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAE 63
             GCD S+LLDN  TTIVSEK A PN NS RGF+VVD++K AVE ACPGVVSC DIL +A+E
Sbjct:    71 GCDGSLLLDNNGTTIVSEKDALPNTNSTRGFDVVDNIKTAVENACPGVVSCVDILALASE 130

Query:    64 QSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVAL 123
              SV+L+GGPSW  LLGRRD RTAN+  AN +LP P  +L  L  +F NVGLN N DLVAL
Sbjct:   131 SSVSLAGGPSWNVLLGRRDRRTANQGGANTSLPSPFENLTNLTQKFTNVGLNVN-DLVAL 189

Query:   124 SGAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTP 183
             SGAHTFGRAQCRTFS RLFNF++TGNPDP             CPQGG+G  +TNLD TTP
Sbjct:   190 SGAHTFGRAQCRTFSPRLFNFSNTGNPDPTLNTTYLATLQQICPQGGSGFTVTNLDPTTP 249

Query:   184 DVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNL 243
             D FDN YF NLQ ++GLLQSDQELFST GA T AIVNNF  NQTAFFE+FV SMI MGN+
Sbjct:   250 DTFDNNYFSNLQTNRGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNI 309

Query:   244 KPLTGNQGEIRLNCRRVN 261
              PLTG+ GEIR NCRR N
Sbjct:   310 SPLTGSNGEIRSNCRRPN 327
GO:0004601 "peroxidase activity" evidence=IDA
GO:0020037 "heme binding" evidence=IDA
TAIR|locus:2170204 PA2 "peroxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170214 AT5G06730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057180 AT2G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138278 AT4G08780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057165 AT2G38390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138273 Prx37 "peroxidase 37" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101298 PRXCA "peroxidase CA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097273 AT3G32980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101318 PRXCB "peroxidase CB" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P59121PERE5_ARMRU1, ., 1, 1, ., 1, ., 70.62790.91810.8431N/Ano
Q42578PER53_ARATH1, ., 1, 1, ., 1, ., 70.66020.91810.7701yesno
P80679PERA2_ARMRU1, ., 1, 1, ., 1, ., 70.63950.91450.8426N/Ano
P19135PER2_CUCSA1, ., 1, 1, ., 1, ., 70.56030.88610.8527N/Ano
Q9LEH3PER15_IPOBA1, ., 1, 1, ., 1, ., 70.71700.91100.7828N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.946
3rd Layer1.11.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PO6
SubName- Full=Peroxidase; EC=1.11.1.7; (349 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-140
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 3e-67
pfam00141180 pfam00141, peroxidase, Peroxidase 7e-49
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 3e-22
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 3e-15
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 2e-10
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 2e-09
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 2e-08
cd00692328 cd00692, ligninase, Ligninase and other manganese- 3e-06
TIGR00198 716 TIGR00198, cat_per_HPI, catalase/peroxidase HPI 0.002
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  396 bits (1021), Expect = e-140
 Identities = 143/257 (55%), Positives = 176/257 (68%), Gaps = 5/257 (1%)

Query: 4   QGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAE 63
           +GCDAS+LLD+T    SEK A PN  S RGF+V+DD+KAA+E ACPGVVSCADIL +AA 
Sbjct: 47  RGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAAR 105

Query: 64  QSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVAL 123
            +V L+GGPS+   LGRRD R ++      NLP P  S+ +L   F + GL    DLVAL
Sbjct: 106 DAVVLAGGPSYEVPLGRRDGRVSSANDVG-NLPSPFFSVSQLISLFASKGLTVT-DLVAL 163

Query: 124 SGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTP 183
           SGAHT GRA C +FSDRL+NF+ TG+PDPTL+     QLR+ CP GG+   L  LD  TP
Sbjct: 164 SGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTP 223

Query: 184 DVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNL 243
           + FDN Y+ NL   +GLL SDQ L S P   T AIVN +  NQ AFF +F  +M++MGN+
Sbjct: 224 NTFDNSYYKNLLAGRGLLTSDQALLSDP--RTRAIVNRYAANQDAFFRDFAAAMVKMGNI 281

Query: 244 KPLTGNQGEIRLNCRRV 260
             LTG+QGEIR NCR V
Sbjct: 282 GVLTGSQGEIRKNCRVV 298

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>gnl|CDD|232870 TIGR00198, cat_per_HPI, catalase/peroxidase HPI Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 281
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PLN02608289 L-ascorbate peroxidase 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
PLN02879251 L-ascorbate peroxidase 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 100.0
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.97
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.97
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.97
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.45
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.9e-84  Score=601.33  Aligned_cols=252  Identities=44%  Similarity=0.775  Sum_probs=237.6

Q ss_pred             CCCcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCC
Q 023510            2 LFQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRR   81 (281)
Q Consensus         2 fv~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~   81 (281)
                      ||+||||||||+++   ..||++++|. +++||++|+.||+.+|++||++|||||||+||||+||+++|||.|+|++||+
T Consensus        68 fv~GCDaSvLl~~~---~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRr  143 (324)
T PLN03030         68 FVRGCDASILIDGS---NTEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRR  143 (324)
T ss_pred             eecCCceEEeeCCC---cccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeecccc
Confidence            89999999999964   3799999998 7899999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhcccccccccccccccccccCCCCC-CCCCCCCHHHHH
Q 023510           82 DSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTG-NPDPTLNTTLLQ  160 (281)
Q Consensus        82 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~-~~dp~~d~~~~~  160 (281)
                      |+.+|...++. +||.|+.+++++++.|+++||+.+ |||+||||||||++||.+|.+|||||.|++ .+||+||+.|+.
T Consensus       144 Dg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~-DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~  221 (324)
T PLN03030        144 DGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQ-DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVP  221 (324)
T ss_pred             CCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHH-HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHH
Confidence            99998777664 899999999999999999999999 999999999999999999999999998864 479999999999


Q ss_pred             HHHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhccCcccccccccCCChhhHHHHHHHHhhCH----HHHHHHHHHH
Q 023510          161 QLRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQ----TAFFENFVTS  236 (281)
Q Consensus       161 ~L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~~~t~~~V~~yA~~~----~~F~~dFa~A  236 (281)
                      .|++.||..++..+.+++|+.||.+|||+||++|++++|+|+|||+|+.|+  +|+++|+.||.|+    +.|+++|++|
T Consensus       222 ~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~--~T~~~V~~~A~~~~~~~~~F~~~Fa~A  299 (324)
T PLN03030        222 QLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDA--STRTFVQRFLGVRGLAGLNFNVEFGRS  299 (324)
T ss_pred             HHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCc--cHHHHHHHHhcccccchhhhHHHHHHH
Confidence            999999964333346789999999999999999999999999999999999  9999999999874    5999999999


Q ss_pred             HHHhhcCCCCCCCCCcccccccccc
Q 023510          237 MIRMGNLKPLTGNQGEIRLNCRRVN  261 (281)
Q Consensus       237 m~Km~~lgv~tg~~GeiR~~C~~~n  261 (281)
                      |+||++|+|+||.+|||||+|+++|
T Consensus       300 mvKMg~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        300 MVKMSNIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             HHHHccCCCCCCCCCceeccccccC
Confidence            9999999999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 5e-90
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 2e-88
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 1e-84
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 1e-84
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 2e-84
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 2e-84
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 4e-84
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 4e-84
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 5e-84
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 8e-84
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 1e-83
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 1e-83
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 5e-83
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 1e-82
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 6e-79
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 7e-68
1sch_A294 Peanut Peroxidase Length = 294 3e-63
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 9e-51
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 8e-46
1iyn_A295 Crystal Structure Of Chloroplastic Ascorbate Peroxi 3e-11
2cl4_X261 Ascorbate Peroxidase R172a Mutant Length = 261 3e-07
3zcg_A261 Ascorbate Peroxidase W41a-h42c Mutant Length = 261 3e-07
2ggn_X261 Conformational Mobility In The Active Site Of A Hem 3e-07
3zcy_A249 Ascorbate Peroxidase W41a-h42y Mutant Length = 249 3e-07
3zch_A261 Ascorbate Peroxidase W41a-h42m Mutant Length = 261 3e-07
1oaf_A261 Ascobate Peroxidase From Soybean Cytosol In Complex 4e-07
2xif_A249 The Structure Of Ascorbate Peroxidase Compound Ii L 4e-07
2vcs_A261 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 4e-07
2y6a_A249 Ascorbate Peroxidase R38a Mutant Length = 249 4e-07
2y6b_A249 Ascorbate Peroxidase R38k Mutant Length = 249 4e-07
2vcf_X264 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 4e-07
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 1e-06
4ged_A268 Crystal Structure Of The Leishmania Major Peroxidas 7e-06
3riv_A271 The Crystal Structure Of Leishmania Major Peroxidas 8e-06
3riw_A271 The Crystal Structure Of Leishmania Major Peroxidas 9e-06
1jci_A294 Stabilization Of The Engineered Cation-Binding Loop 6e-04
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure 
Iteration: 1

 Score =  327 bits (838), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 162/258 (62%), Positives = 194/258 (75%), Gaps = 1/258 (0%)
Query: 5   GCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQ 64
           GCDASILLD+T +I SEK A PN NSARGF VVD++K A+E ACPGVVSC+D+L +A+E 
Sbjct: 49  GCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEA 108
Query: 65  SVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALS 124
           SV+L+GGPSWT LLGRRDS TAN   AN ++P P  SL  +  +F  VGLN N DLVALS
Sbjct: 109 SVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTN-DLVALS 167
Query: 125 GAHTFGRAQCRTFSDRLFNFNSTGNPDPXXXXXXXXXXXXXCPQGGNGSVLTNLDVTTPD 184
           GAHTFGRA+C  F++RLFNF+ TGNPDP             CPQ G+ S +TNLD++TPD
Sbjct: 168 GAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPD 227
Query: 185 VFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNLK 244
            FDN YF NLQ + GLLQSDQELFST G+ T AIV +F  NQT FF+ F  SMI MGN+ 
Sbjct: 228 AFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNIS 287
Query: 245 PLTGNQGEIRLNCRRVNG 262
           PLTG+ GEIRL+C++VNG
Sbjct: 288 PLTGSNGEIRLDCKKVNG 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase From Tobacco Plants And Structural Insights For Its Instability Length = 295 Back     alignment and structure
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant Length = 261 Back     alignment and structure
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant Length = 261 Back     alignment and structure
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme Peroxidase Length = 261 Back     alignment and structure
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant Length = 249 Back     alignment and structure
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant Length = 261 Back     alignment and structure
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With Ascorbate Length = 261 Back     alignment and structure
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii Length = 249 Back     alignment and structure
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Mutant H42a Length = 261 Back     alignment and structure
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant Length = 249 Back     alignment and structure
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant Length = 249 Back     alignment and structure
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Length = 264 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major Peroxidase-Cytochrome C Complex Length = 268 Back     alignment and structure
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Length = 271 Back     alignment and structure
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Mutant C197t Length = 271 Back     alignment and structure
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 1e-161
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 1e-161
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-160
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-153
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 1e-151
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-150
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-142
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 7e-82
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 3e-58
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 4e-56
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 1e-51
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 2e-51
2e39_A344 Peroxidase; heme protein, coordination geometry of 4e-51
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 1e-50
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 5e-15
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 7e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 2e-04
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
 Score =  448 bits (1154), Expect = e-161
 Identities = 166/259 (64%), Positives = 192/259 (74%), Gaps = 1/259 (0%)

Query: 4   QGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAE 63
           QGCD S+LL+NT TI SE+ A PN NS RG +VV+D+K AVE +CP  VSCADIL IAAE
Sbjct: 47  QGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAE 106

Query: 64  QSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVAL 123
            +  L GGP W   LGRRDS TANRTLAN+NLP P  +L +LK  F   GLN   DLV L
Sbjct: 107 IASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTL-DLVTL 165

Query: 124 SGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTP 183
           SG HTFGRA+C TF +RL+NF++TGNPDPTLNTT L+ LR  CPQ   G  LTNLD++TP
Sbjct: 166 SGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTP 225

Query: 184 DVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNL 243
           D FDN+Y+ NL    GLLQSDQELFSTPGADT  IVN+F  NQ  FF NF  SMI+MGN+
Sbjct: 226 DQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNI 285

Query: 244 KPLTGNQGEIRLNCRRVNG 262
             LTG++GEIRL C  VNG
Sbjct: 286 GVLTGDEGEIRLQCNFVNG 304
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Length = 268 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=3e-89  Score=632.06  Aligned_cols=258  Identities=44%  Similarity=0.719  Sum_probs=248.8

Q ss_pred             CCCcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCC
Q 023510            2 LFQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRR   81 (281)
Q Consensus         2 fv~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~   81 (281)
                      ||+||||||||++++++++|+++++|.++++||++|+.||++||+.||++|||||||+||||+||+++|||.|+|++||+
T Consensus        45 fv~GCDgSiLld~t~~~~~Ek~~~~N~~~lrgf~vid~iK~~le~~Cp~~VScADilalAardav~~~GGP~~~v~~GRr  124 (304)
T 3hdl_A           45 FVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRR  124 (304)
T ss_dssp             TTTSSSSGGGCCCBTTBCCGGGSTTTTTTCCCHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHCCCCCCEECCC
T ss_pred             cCCCCCeeeeecCCCCCcccccCCCcccchHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhhhhhccCCCccccccCcc
Confidence            89999999999988778899999999867799999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHH
Q 023510           82 DSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQ  161 (281)
Q Consensus        82 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~  161 (281)
                      |+.++....++.+||.|..++++|++.|+++||+.+ ||||||||||||++||.+|.+|||||.|++.+||+||+.|++.
T Consensus       125 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~-d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~  203 (304)
T 3hdl_A          125 DGTVSLASEANAQIPSPLFNATQLINSFANKTLTAD-EMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAAL  203 (304)
T ss_dssp             BCSCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHH-HHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHH
T ss_pred             CCCCCCccccccCCCCCCCCHHHHHHHHHHcCCCHH-HhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHH
Confidence            999998877777899999999999999999999999 9999999999999999999999999999888999999999999


Q ss_pred             HHhhCCCCCC--CCcccccCCCCCcccChHHHHHHhhccCcccccccccCCChhhHHHHHHHHhhCHHHHHHHHHHHHHH
Q 023510          162 LRQLCPQGGN--GSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIR  239 (281)
Q Consensus       162 L~~~Cp~~~~--~~~~~~ld~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dFa~Am~K  239 (281)
                      |++.||..++  +++.++||+.||.+|||+||++|+.++|||+|||+|+.|+  +|+.+|+.||.|++.|+++|++||+|
T Consensus       204 L~~~Cp~~~~~~~~~~~~lD~~TP~~FDN~Yy~nL~~~~glL~SDq~L~~d~--~t~~~V~~yA~~~~~F~~~Fa~AmvK  281 (304)
T 3hdl_A          204 LRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEA--NLSAAVKANAMNLTAWASKFAQAMVK  281 (304)
T ss_dssp             HHHHSCTTCCTTSCCEEESCSSSTTSCSTHHHHHHHTTCCCSHHHHGGGSSH--HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HhccCCCCCCCCCccccCCCCCCcccccHHHHHHHHhCcCCCCCCHHHhcCc--cHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            9999998766  7778999999999999999999999999999999999999  99999999999999999999999999


Q ss_pred             hhcCCCCCCCCCccccccccccC
Q 023510          240 MGNLKPLTGNQGEIRLNCRRVNG  262 (281)
Q Consensus       240 m~~lgv~tg~~GeiR~~C~~~n~  262 (281)
                      |++|||+||.+||||++|++||+
T Consensus       282 mg~igv~tg~~GeIR~~C~~~N~  304 (304)
T 3hdl_A          282 MGQIEVLTGTQGEIRTNCSVVNS  304 (304)
T ss_dssp             HTTTTCCCTTSSBCCSBTTBCC-
T ss_pred             HHhcCCCCCCCCeeeCCccccCC
Confidence            99999999999999999999993
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 281
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 1e-108
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-105
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 9e-98
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 8e-97
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 1e-89
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 4e-86
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 4e-58
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 4e-58
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 3e-50
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 1e-36
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 5e-34
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 1e-30
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

 Score =  314 bits (805), Expect = e-108
 Identities = 166/259 (64%), Positives = 192/259 (74%), Gaps = 1/259 (0%)

Query: 4   QGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAE 63
           QGCD S+LL+NT TI SE+ A PN NS RG +VV+D+K AVE +CP  VSCADIL IAAE
Sbjct: 47  QGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAE 106

Query: 64  QSVALSGGPSWTNLLGRRDSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVAL 123
            +  L GGP W   LGRRDS TANRTLAN+NLP P  +L +LK  F   GLN   DLV L
Sbjct: 107 IASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTL-DLVTL 165

Query: 124 SGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQLRQLCPQGGNGSVLTNLDVTTP 183
           SG HTFGRA+C TF +RL+NF++TGNPDPTLNTT L+ LR  CPQ   G  LTNLD++TP
Sbjct: 166 SGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTP 225

Query: 184 DVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMGNL 243
           D FDN+Y+ NL    GLLQSDQELFSTPGADT  IVN+F  NQ  FF NF  SMI+MGN+
Sbjct: 226 DQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNI 285

Query: 244 KPLTGNQGEIRLNCRRVNG 262
             LTG++GEIRL C  VNG
Sbjct: 286 GVLTGDEGEIRLQCNFVNG 304
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.98
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.98
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.95
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=6.3e-84  Score=596.26  Aligned_cols=260  Identities=64%  Similarity=1.002  Sum_probs=249.7

Q ss_pred             CCCcccceeeccCCCCCccccccCCCCCchhhHHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCceeecCCCC
Q 023510            2 LFQGCDASILLDNTTTIVSEKFAAPNNNSARGFEVVDDMKAAVERACPGVVSCADILTIAAEQSVALSGGPSWTNLLGRR   81 (281)
Q Consensus         2 fv~GcDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VS~ADilalAa~~av~~~GGP~~~v~~GR~   81 (281)
                      ||+||||||||+++.++.+|+++++|.++++||++|+.||+.||+.||++|||||||+||||+||+++|||.|+|++||+
T Consensus        45 fv~GCDgSill~~~~~~~~E~~~~~N~~~~~g~~~id~iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v~~GR~  124 (304)
T d1fhfa_          45 FVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRR  124 (304)
T ss_dssp             TTTCSSSGGGCCCCSSCCCGGGSTTTTTTCCCHHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCCCBCCC
T ss_pred             ccCCCCeeEeecCCCCccccccCCcccccchhHHHHHHHHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccccCCCc
Confidence            89999999999988778899999999988899999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccccCCCCCCCCCHHHHHHHHHHcCCCCchhhhhhhcccccccccccccccccccCCCCCCCCCCCCHHHHHH
Q 023510           82 DSRTANRTLANENLPGPNNSLERLKDRFRNVGLNDNFDLVALSGAHTFGRAQCRTFSDRLFNFNSTGNPDPTLNTTLLQQ  161 (281)
Q Consensus        82 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~~e~VaLsGaHtiG~~hc~~f~~Rl~~f~g~~~~dp~~d~~~~~~  161 (281)
                      |+.++...++..+||.|..++++++..|+++||+.+ |||||+||||||++||.+|..|+|+|.+++.+||++++.|+..
T Consensus       125 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~-d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~  203 (304)
T d1fhfa_         125 DSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTL-DLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEV  203 (304)
T ss_dssp             BCSCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCHH-HHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHH
T ss_pred             CcCccccccccccCCCCCCCHHHHHHHHHHcCCCHH-HHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHH
Confidence            999998877777899999999999999999999999 9999999999999999999999999998888999999999999


Q ss_pred             HHhhCCCCCCCCcccccCCCCCcccChHHHHHHhhccCcccccccccCCChhhHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 023510          162 LRQLCPQGGNGSVLTNLDVTTPDVFDNKYFFNLQIHKGLLQSDQELFSTPGADTAAIVNNFGRNQTAFFENFVTSMIRMG  241 (281)
Q Consensus       162 L~~~Cp~~~~~~~~~~ld~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~~~t~~~V~~yA~~~~~F~~dFa~Am~Km~  241 (281)
                      |+..||..+.....+.+|..||.+|||+||++++.++|+|+||++|+.|+.++|+++|+.||.|+++|+++|++||+||+
T Consensus       204 L~~~c~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~  283 (304)
T d1fhfa_         204 LRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMG  283 (304)
T ss_dssp             HHHHSCSSCSSCCEEESCSSSTTSCSTHHHHHHHTTCCSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCCCCcccccCCCCCCccccHHHHHHhhcCcccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHh
Confidence            99999987766677889999999999999999999999999999999997447999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccccccC
Q 023510          242 NLKPLTGNQGEIRLNCRRVNG  262 (281)
Q Consensus       242 ~lgv~tg~~GeiR~~C~~~n~  262 (281)
                      +|||+||.+||||++|+++|+
T Consensus       284 ~lgv~tg~~GeiR~~C~~~N~  304 (304)
T d1fhfa_         284 NIGVLTGDEGEIRLQCNFVNG  304 (304)
T ss_dssp             TTTCCCTTSSBCCSBTTBCCC
T ss_pred             cCCCCCCCCCcccCcccCcCC
Confidence            999999999999999999996
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure