Citrus Sinensis ID: 023520

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEEcccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHccHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccEEccccHHEEEEEEcccccccccEEEEEEEEEcccccccccEEEEEEEcHHcHHHHHHHHHHHHHHHcccccccccHHHHcccc
Coil and Loop (DISEMBL)
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSllnlpspgqvdPVVASLRSLIRKCVRenftsddllklfppdlsldLQSNLILLLQKHQKQWkeessreqplsgtsvsyhvkmsaapsfrpflssviatplwphqddpftnfnhndlgasasviadtnvaplapmpllrdgsppgnmgslpclksmtwtmeksnsepgnrVAVISLKlqdytkspsgeteVKFQLTKDTLEAMLRSLTYINEQLSSlaatssgpaqkkqkq
Flexible Loop (DISEMBL)
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSllnlpspgqvDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKeessreqplsgtSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLqdytkspsgetevkFQLTKDTLEAMLRSLTYINEQLsslaatssgpaqkkqkq
Low Complexity Region (SEG)
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPdlsldlqsnlilllqKHQKQWKEESSREQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ
Disordered region (IsUnstruct)
********TLYLQLHKLSAINSEQALDNILTTLWSTRKT*********************VDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQK*****************************PSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVA******************************************VISLK***************FQLTKDTLEAMLRSLTYIN********************
Disordered Region (DISOPRED)
**********YLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWK*********************************IATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKS**E*GNRVAVISLKLQ************KFQLTKDTLEAMLRSLTYINEQ******************
Disordered Region (DISEMBL)
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRK***********QSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQ********************VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWT********GNRVAVISLKLQDY*********VKFQLTKDTLEAMLRSLTYINEQLSSL**************
Disordered Region (DISPRO)
******TDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQPLSGTSVSYHVKMSAAPS**********TPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLS****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGDTGTDTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q9ZVC9	851	Protein FAR1-RELATED SEQU	yes	no	0.448	0.148	0.566	6e-33

>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2

 Score =  141 bits (355), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 89/127 (70%), Gaps = 1/127 (0%)

Query: 143 LSSVIATPL-WPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLP 201
           LS+   TPL WP QD+    FN ND GA A  ++D N+  +AP+ L RD + P NM +LP
Sbjct: 663 LSAADTTPLLWPRQDEMIRRFNLNDGGARAQSVSDLNLPRMAPVSLHRDDTAPENMVALP 722

Query: 202 CLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYIN 261
           CLKS+TW ME  N+ PG RVAVI+LKL DY K PS + +VKFQL+  TLE MLRS+ YI+
Sbjct: 723 CLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAYIS 782

Query: 262 EQLSSLA 268
           EQLSS A
Sbjct: 783 EQLSSPA 789

Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
255580266	304	hypothetical protein RCOM_0845740 [Ricin	0.928	0.858	0.646	3e-88
296085855	332	unnamed protein product [Vitis vinifera]	0.975	0.825	0.629	2e-76
225439135	277	PREDICTED: uncharacterized protein LOC10	0.975	0.989	0.629	3e-76
118484374	274	unknown [Populus trichocarpa]	0.960	0.985	0.561	2e-70
358248898	253	uncharacterized protein LOC100778299 [Gl	0.843	0.936	0.509	7e-64
294463944	278	unknown [Picea sitchensis]	0.953	0.964	0.48	2e-60
147846210	242	hypothetical protein VITISV_026657 [Viti	0.786	0.913	0.608	4e-53
357508999	283	FAR1-related protein [Medicago truncatul	0.943	0.936	0.514	1e-52
255561266	523	hypothetical protein RCOM_1110800 [Ricin	0.419	0.225	0.635	1e-36
147790734	1002	hypothetical protein VITISV_002225 [Viti	0.448	0.125	0.611	1e-36

>gi|255580266|ref|XP_002530963.1| hypothetical protein RCOM_0845740 [Ricinus communis] gi|223529478|gb|EEF31435.1| hypothetical protein RCOM_0845740 [Ricinus communis]

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 170/263 (64%), Positives = 204/263 (77%), Gaps = 2/263 (0%)

Query: 8   DTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVAS 67
           D+LYLQLHKLSAI+ E++LD+IL TLW TR+TGLRS EKS +QSLLNL S  ++DPV+A 
Sbjct: 4   DSLYLQLHKLSAIDKEESLDHILATLWKTRRTGLRSPEKSQIQSLLNLSSLPELDPVLAC 63

Query: 68  LRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQ-PLSGTS 126
           LRSLIRK   ENFT DDLLKLFPPDLSLDLQSNLILLLQK+Q QWKEE SREQ  L  TS
Sbjct: 64  LRSLIRKSAHENFTGDDLLKLFPPDLSLDLQSNLILLLQKYQNQWKEEISREQHQLPRTS 123

Query: 127 VSYHVKMSAAPSFRPFLSSVIAT-PLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPM 185
           VSY VK S  PS     S  I+  PLWP Q+D    F H+D+G S  ++ D   + + P+
Sbjct: 124 VSYQVKTSMPPSLTALPSLEISNMPLWPRQNDLNGRFTHSDIGVSTPLVVDNTASYVGPV 183

Query: 186 PLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQL 245
            +  D SPP ++G LP LKSMTWTME  NS P N++A+I+LKLQD+TKSPSGE EVKFQL
Sbjct: 184 SIQHDVSPPDDLGVLPRLKSMTWTMENRNSVPANKIAIITLKLQDFTKSPSGEMEVKFQL 243

Query: 246 TKDTLEAMLRSLTYINEQLSSLA 268
           TKDTLEAMLRS+TYI++QLS+++
Sbjct: 244 TKDTLEAMLRSMTYISDQLSNMS 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085855|emb|CBI31179.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 173/275 (62%), Positives = 204/275 (74%), Gaps = 1/275 (0%)

Query: 8   DTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVAS 67
           +TLY  LHKLS   SE+A++ IL TLW TRKTGL + +KSH+QSLL+LPS  QVDPV+A 
Sbjct: 58  ETLYQHLHKLSGTKSEEAIEEILETLWKTRKTGLSTQQKSHLQSLLSLPSLQQVDPVLAC 117

Query: 68  LRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSR-EQPLSGTS 126
           LRSLIRK V ENF+ DD+LKLFPPDLSLDLQS LILL QK+Q QWKE+ SR E PL G  
Sbjct: 118 LRSLIRKSVHENFSGDDILKLFPPDLSLDLQSLLILLFQKYQNQWKEDLSRDEYPLPGAH 177

Query: 127 VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMP 186
           VSY VK +   SF P  SS     LWP QDD   +FN++DL +    + D NV+ LAP+ 
Sbjct: 178 VSYQVKTNVPLSFTPLPSSETPASLWPRQDDSIAHFNNSDLVSPTPNVVDNNVSCLAPIS 237

Query: 187 LLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLT 246
           L RD  P  N+G LP LKSMTWTMEK N  P NRVA +SLKLQDYTKSP GETEVKFQLT
Sbjct: 238 LQRDVGPLDNLGILPRLKSMTWTMEKRNLAPANRVAFVSLKLQDYTKSPLGETEVKFQLT 297

Query: 247 KDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ 281
           +DTLE MLRS+TYI+EQLS+   +S+ P QK+ +Q
Sbjct: 298 RDTLEGMLRSMTYISEQLSNTVGSSAEPLQKRPRQ 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439135|ref|XP_002270929.1| PREDICTED: uncharacterized protein LOC100255422 [Vitis vinifera]

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 173/275 (62%), Positives = 204/275 (74%), Gaps = 1/275 (0%)

Query: 8   DTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVAS 67
           +TLY  LHKLS   SE+A++ IL TLW TRKTGL + +KSH+QSLL+LPS  QVDPV+A 
Sbjct: 3   ETLYQHLHKLSGTKSEEAIEEILETLWKTRKTGLSTQQKSHLQSLLSLPSLQQVDPVLAC 62

Query: 68  LRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSR-EQPLSGTS 126
           LRSLIRK V ENF+ DD+LKLFPPDLSLDLQS LILL QK+Q QWKE+ SR E PL G  
Sbjct: 63  LRSLIRKSVHENFSGDDILKLFPPDLSLDLQSLLILLFQKYQNQWKEDLSRDEYPLPGAH 122

Query: 127 VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMP 186
           VSY VK +   SF P  SS     LWP QDD   +FN++DL +    + D NV+ LAP+ 
Sbjct: 123 VSYQVKTNVPLSFTPLPSSETPASLWPRQDDSIAHFNNSDLVSPTPNVVDNNVSCLAPIS 182

Query: 187 LLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLT 246
           L RD  P  N+G LP LKSMTWTMEK N  P NRVA +SLKLQDYTKSP GETEVKFQLT
Sbjct: 183 LQRDVGPLDNLGILPRLKSMTWTMEKRNLAPANRVAFVSLKLQDYTKSPLGETEVKFQLT 242

Query: 247 KDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ 281
           +DTLE MLRS+TYI+EQLS+   +S+ P QK+ +Q
Sbjct: 243 RDTLEGMLRSMTYISEQLSNTVGSSAEPLQKRPRQ 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484374|gb|ABK94064.1| unknown [Populus trichocarpa]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 160/285 (56%), Positives = 202/285 (70%), Gaps = 15/285 (5%)

Query: 1   MEGDTGTDTLYLQLHKLSAINS-EQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPG 59
           ME     D+LYLQLHKLS++ + E+ +++ILT+LW TR+TGL S  KS  QSLL++PS  
Sbjct: 1   MEKMEDGDSLYLQLHKLSSVATKEEDVEHILTSLWKTRRTGLPSPLKSRFQSLLDIPSLP 60

Query: 60  QVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEE---S 116
           Q+DPV+A LRS+IRKCV EN +SD+LLKLFPPDLSLDLQ+ LI LL K+Q QWK++   +
Sbjct: 61  QLDPVLACLRSIIRKCVHENMSSDELLKLFPPDLSLDLQTTLITLLLKYQIQWKQDDLAT 120

Query: 117 SREQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIAD 176
           + +  L  TSV     +S  PSF    ++ + T LWP QDD    FNHN      S+IA+
Sbjct: 121 TEQHSLPRTSV---FGISGPPSF----TAEVPTQLWPRQDDTNGRFNHNGFEEPTSMIAE 173

Query: 177 TNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPS 236
           T  +  A   +    +   NM ++P LKSMTWT E  N    NRVA+I+LKLQDY+KS S
Sbjct: 174 TAASVFAQHHV----TALDNMANVPRLKSMTWTAENRNPSSANRVAIITLKLQDYSKSSS 229

Query: 237 GETEVKFQLTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ 281
           GETEVKFQL++DTLEAMLRS+TYINEQLSS   +SSGPAQKKQKQ
Sbjct: 230 GETEVKFQLSRDTLEAMLRSMTYINEQLSSRVGSSSGPAQKKQKQ 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248898|ref|NP_001239959.1| uncharacterized protein LOC100778299 [Glycine max] gi|255636248|gb|ACU18464.1| unknown [Glycine max]

 Score =  249 bits (637), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 141/277 (50%), Positives = 178/277 (64%), Gaps = 40/277 (14%)

Query: 13  QLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLI 72
           +LHKLS I SE+ L+ +L TLWSTRKTGL  ++KSH QSLL+LPSP  +DPV+A LRSL+
Sbjct: 9   ELHKLSQIESEETLNQMLCTLWSTRKTGLPLSDKSHFQSLLHLPSPSHLDPVLACLRSLV 68

Query: 73  RKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQP-LSGTSVSYHV 131
           RKC  +N   DDLL+LFP DL + LQ+NL+  LQ+++ +WKE+ S   P L GT      
Sbjct: 69  RKCAHQNLARDDLLRLFPRDLPIQLQTNLVSALQRNRDRWKEDVSHVIPQLKGT------ 122

Query: 132 KMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDL-------GASASVIADTNVAPLAP 184
            ++ APS            LWP Q+  F       +       G ++    D   A    
Sbjct: 123 -INFAPSL-----------LWPRQEQDFDAVAVPAVVPDVGPSGVNSCFQCDAVGA---- 166

Query: 185 MPLLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQ 244
                      N+ +LPCLKSMTWTME   S P +RVA+ISLKL DY+KSPSGETE+KFQ
Sbjct: 167 ---------SDNLENLPCLKSMTWTMENRGSSPADRVAIISLKLHDYSKSPSGETEIKFQ 217

Query: 245 LTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ 281
           LT+DTLEAMLRS+TYI EQL+++  TSSGPA KKQKQ
Sbjct: 218 LTRDTLEAMLRSMTYIREQLNAV-ETSSGPANKKQKQ 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294463944|gb|ADE77493.1| unknown [Picea sitchensis]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/275 (48%), Positives = 185/275 (67%), Gaps = 7/275 (2%)

Query: 9   TLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASL 68
           +L+  L KL    +++A++ IL +LW TRK+GL SAEK+H+Q LL L S  ++DP+V  L
Sbjct: 4   SLFEHLPKLVRAKTQEAIEYILQSLWRTRKSGLDSAEKAHIQDLLELSSQEELDPIVVCL 63

Query: 69  RSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQP-LSGTSV 127
           R LIR+CV  N + +++ KLFPP+   +LQS L+LLLQK Q++W+E+ +++QP      V
Sbjct: 64  RMLIRRCVHSNTSEEEIHKLFPPEFQSELQSILVLLLQKLQREWREDMAKDQPEWPRKRV 123

Query: 128 SYHVKMSAAPSFRPFLSSVIA--TPLWPHQDDPFTNFNHNDLGASASVIA-DTNVAPLAP 184
            Y VK+S  P+  P   + I+   P+WP  ++     NH +LG    + + + N + L P
Sbjct: 124 VYQVKVS--PTMPPSSPAQISPVPPIWPRLEENRRRSNHCELGIPVGMPSGNLNPSRLVP 181

Query: 185 MPLLRDGSPPGN-MGSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKF 243
              L+D S   N + SLP LK+MTW+ME  NS P NRVAVI+LKLQDYTK  SGETE+KF
Sbjct: 182 QQPLQDDSHGDNSLVSLPRLKAMTWSMENQNSTPANRVAVINLKLQDYTKPSSGETEIKF 241

Query: 244 QLTKDTLEAMLRSLTYINEQLSSLAATSSGPAQKK 278
           QL++DTLEAMLRS+ YI +QLS+ AA  +GP  KK
Sbjct: 242 QLSRDTLEAMLRSMYYIRDQLSNAAAVQTGPILKK 276

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846210|emb|CAN80630.1| hypothetical protein VITISV_026657 [Vitis vinifera]

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 135/222 (60%), Positives = 159/222 (71%), Gaps = 1/222 (0%)

Query: 8   DTLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVAS 67
           +TLY  LHKLS   SE+A++ IL TLW TRKTGL + +KSH+QSLL+LPS  QVDPV+A 
Sbjct: 3   ETLYQHLHKLSGTKSEEAIEEILETLWKTRKTGLSTQQKSHLQSLLSLPSLQQVDPVLAC 62

Query: 68  LRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSR-EQPLSGTS 126
           LRSLIRK V ENF+ DD+LKLFPPDLSLDLQS LILL QK+Q QWKE+ SR E PL G  
Sbjct: 63  LRSLIRKSVHENFSGDDILKLFPPDLSLDLQSLLILLFQKYQNQWKEDLSRDEYPLPGAH 122

Query: 127 VSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMP 186
           VSY VK +   SF P  SS     LWP QDD   +FN++DL +    + D NV+ LAP+ 
Sbjct: 123 VSYQVKTNVPLSFTPLPSSETPASLWPRQDDSIAHFNNSDLVSPTPNVVDNNVSCLAPIS 182

Query: 187 LLRDGSPPGNMGSLPCLKSMTWTMEKSNSEPGNRVAVISLKL 228
           L RD  P  N+G LP LKSMTWTMEK N  P NRVA +SLK+
Sbjct: 183 LQRDVGPLDNLGILPRLKSMTWTMEKRNLAPANRVAFVSLKV 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508999|ref|XP_003624788.1| FAR1-related protein [Medicago truncatula] gi|355499803|gb|AES81006.1| FAR1-related protein [Medicago truncatula] gi|388502310|gb|AFK39221.1| unknown [Medicago truncatula]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/272 (51%), Positives = 178/272 (65%), Gaps = 7/272 (2%)

Query: 15  HKLSAINSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRK 74
           HKL  I SE+ L++IL+TLW+TRKTGL  ++KSH QSLLNL S  Q+DP++ASLR LIR 
Sbjct: 14  HKLHCIKSEETLNHILSTLWNTRKTGLPPSQKSHFQSLLNLSSSSQLDPLLASLRWLIRI 73

Query: 75  CVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQP-LSGTSVSYHVKM 133
            V  N T D LLK FPP L L LQ+ L+L  Q ++  W  + S++Q  L  T  S  V+ 
Sbjct: 74  FVSRNLTHDQLLKFFPPHLPLQLQTILLLSFQNNRDCWNHDFSQQQDLLQWTDASCQVRT 133

Query: 134 SAAPSFRPFLSSVIATPLWPHQD-DPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGS 192
           +  PSF    SS ++T LWP QD D     N  DLG   S +A+ NV+ L P     D +
Sbjct: 134 NVHPSFSSEPSSSMSTSLWPRQDSDSLARLNCGDLGVPTSPVAEVNVSGL-PTCFQCDIT 192

Query: 193 PPGNM---GSLPCLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDT 249
              N+    SLP LKSMTWTME   S P  RVA+ISLKL DY+KS +GET+VKFQLT+DT
Sbjct: 193 SSENLVLEESLPHLKSMTWTMESRGSSPAERVAIISLKLHDYSKSTAGETDVKFQLTRDT 252

Query: 250 LEAMLRSLTYINEQLSSLAATSSGPAQKKQKQ 281
           LE ML+S+T++ E+L ++  TSS  A KKQKQ
Sbjct: 253 LETMLKSMTFVGERLRAV-ETSSRLANKKQKQ 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561266|ref|XP_002521644.1| hypothetical protein RCOM_1110800 [Ricinus communis] gi|223539156|gb|EEF40751.1| hypothetical protein RCOM_1110800 [Ricinus communis]

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 90/118 (76%)

Query: 151 LWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTM 210
           LWP QD+    FN ND GA+A  +AD N+  +AP+ L RD  PPGNM  LPCLKSMTW M
Sbjct: 344 LWPRQDEVIRRFNLNDAGAAAQSVADLNLPRMAPVSLQRDDGPPGNMAVLPCLKSMTWVM 403

Query: 211 EKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLSSLA 268
           E  N  PGNRVAVI+LKLQDY+K+PS E+EVKFQL++ TLE MLRS+ YI+EQLS+ A
Sbjct: 404 ENKNLTPGNRVAVINLKLQDYSKTPSTESEVKFQLSRVTLEPMLRSMAYISEQLSTPA 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790734|emb|CAN70262.1| hypothetical protein VITISV_002225 [Vitis vinifera]

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/126 (61%), Positives = 92/126 (73%)

Query: 143 LSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPC 202
           L+S +   LWP QD+    FN ND G  A  +AD N+  +AP+ L  D  PP NM  LPC
Sbjct: 822 LASDMTPLLWPRQDEVIRRFNLNDAGVPAQPVADLNLPRMAPVSLHHDDGPPENMVVLPC 881

Query: 203 LKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINE 262
           LKSMTW ME  NS PGNRVAVI+LKLQDY+K+PSGE+EVKFQL++ TLE MLRS+ YINE
Sbjct: 882 LKSMTWVMENKNSTPGNRVAVINLKLQDYSKTPSGESEVKFQLSRVTLEPMLRSMAYINE 941

Query: 263 QLSSLA 268
           QLS+ A
Sbjct: 942 QLSTPA 947

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2059304	851	FRS3 "FAR1-related sequence 3"	0.448	0.148	0.566	5.3e-31

TAIR|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 5.3e-31, P = 5.3e-31
 Identities = 72/127 (56%), Positives = 89/127 (70%)

Query:   143 LSSVIATPL-WPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLP 201
             LS+   TPL WP QD+    FN ND GA A  ++D N+  +AP+ L RD + P NM +LP
Sbjct:   663 LSAADTTPLLWPRQDEMIRRFNLNDGGARAQSVSDLNLPRMAPVSLHRDDTAPENMVALP 722

Query:   202 CLKSMTWTMEKSNSEPGNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYIN 261
             CLKS+TW ME  N+ PG RVAVI+LKL DY K PS + +VKFQL+  TLE MLRS+ YI+
Sbjct:   723 CLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAYIS 782

Query:   262 EQLSSLA 268
             EQLSS A
Sbjct:   783 EQLSSPA 789

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009639 "response to red or far red light" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033674001 SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (274 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
cd04757	108	Commd9 COMM_Domain containing protein 9. The COMM	99.93
PF07258	178	HCaRG: HCaRG protein; InterPro: IPR009886 This fam	99.54
cd04756	176	Commd8 COMM_Domain containing protein 8. The COMM	99.48
cd04750	166	Commd2 COMM_Domain containing protein 2. The COMM	99.44
cd04749	174	Commd1_MURR1 COMM_Domain containing protein 1, als	99.29
cd04758	186	Commd10 COMM_Domain containing protein 10. The COM	98.89
cd04752	174	Commd4 COMM_Domain containing protein 4. The COMM	98.81
cd04748	87	Commd COMM_Domain, a family of domains found at th	98.71
cd04753	110	Commd5_HCaRG COMM_Domain containing protein 5, als	97.81
cd04755	180	Commd7 COMM_Domain containing protein 7. The COMM	97.71
cd04751	95	Commd3 COMM_Domain containing protein 3. The COMM	96.62
cd04754	86	Commd6 COMM_Domain containing protein 6. The COMM	95.3

>cd04757 Commd9 COMM_Domain containing protein 9

Probab=99.93  E-value=2e-26  Score=188.72  Aligned_cols=100  Identities=28%  Similarity=0.489  Sum_probs=92.9

Q ss_pred             ccHHHHHHHHHHHHHhhHHHHHHHhhccCCCCCccceeecccCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCccc
Q 023520           93 LSLDLQSNLILLLQKHQKQWKEESSREQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASAS  172 (281)
Q Consensus        93 ~~~~Lq~lLt~llqk~q~~Wred~~~~Q~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lwp~qd~~~~~~n~~d~~~p~~  172 (281)
                      ||++|+++|++++.++++.||+.+...++                                                   
T Consensus         1 f~~~l~~lL~~~~le~r~~~r~~~~~~~~---------------------------------------------------   29 (108)
T cd04757           1 FHSNLKNLLTKIILENRDKWRSEASENQI---------------------------------------------------   29 (108)
T ss_pred             CCHHHHHHHHHHHHHhhHHHHHHHHhcCC---------------------------------------------------
Confidence            89999999999999999999999999997                                                   


Q ss_pred             cccccCCCCCCCCCcccCCCCCCCCCCCcccccccccccc-cCCCCCCcce----EEeeeeccCCCCCCCc---eeEEEE
Q 023520          173 VIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEK-SNSEPGNRVA----VISLKLQDYTKSPSGE---TEVKFQ  244 (281)
Q Consensus       173 ~v~d~~~~~~~p~~~q~d~~~~~n~v~LPrLksMdWr~d~-~~Sdp~~RmA----VInLKlQd~~k~~sge---~eVkfe  244 (281)
                                                ++|+|++||||+|+ .+|+..+||+    +++||++|.++.++++   ++|+||
T Consensus        30 --------------------------slp~l~dldWRldv~isS~sl~r~~~P~vll~lkv~~~~~~~~~~~~~~~v~~E   83 (108)
T cd04757          30 --------------------------SLPKLVDHDWRVDIKTSSDSLGRMAVPTCLLQMKIQEAPSLCGLLPPLSTLTME   83 (108)
T ss_pred             --------------------------CchhhhCccceehhHHHHHHHHhhhcCeEEEEEEeecCccccccCCCcceEEEE
Confidence                                      99999999999999 7888888777    7999999988866543   799999


Q ss_pred             ecHHHHHHHHhhhhhHHHHhhhhhc
Q 023520          245 LTKDTLEAMLRSLTYINEQLSSLAA  269 (281)
Q Consensus       245 LsKeTLdtML~sL~~IrDQLSsva~  269 (281)
                      ||||||||||+||++|||||++||+
T Consensus        84 LsKe~l~tml~~L~~i~~QL~~va~  108 (108)
T cd04757          84 LSKETLDTMLDGLGRIRDQLSAVAQ  108 (108)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999984

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>PF07258 HCaRG: HCaRG protein; InterPro: IPR009886 This family consists of several mammalian HCaRG(hypertension-related, calcium-regulated gene) proteins

Probab=99.54  E-value=1.9e-17  Score=135.94  Aligned_cols=165  Identities=22%  Similarity=0.322  Sum_probs=57.4

Q ss_pred             CCHHHHHHHHHHhhcccCCCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhhcC-CCCccHHHHH
Q 023520           21 NSEQALDNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLF-PPDLSLDLQS   99 (281)
Q Consensus        21 ~Ske~v~~Ilq~lw~tR~tgl~~~~~~~~~~~L~l~S~~eldpll~~Lr~Lir~~v~~n~s~d~IlkLF-P~d~~~~Lq~   99 (281)
                      =+++.++++|+.++.....|........++..+++ +.++++.+++|+..+++.|++.+++.+++.+.+ .-.|+.+.+.
T Consensus         7 l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ll~~a~k~~~~~~~l~~~L~~lgl~~e~~~   85 (178)
T PF07258_consen    7 LSSEKFKQLCKRAIDFLLGGDNESEISKLAEDLQL-SEEELKQLVAALSYLLREAAKYDLSEEDLRQELEQLGLPEEHAE   85 (178)
T ss_dssp             T---SSS--SS--HHHHHHHH-SS----------S--SSTHHHHHTTTSTTHHHHTTT---TTTSTTTHHHTT--HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCCCcccccchhhcccC-CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHH
Confidence            35566788888888876555555588999999999 889999999999999999999999998888777 3359999999


Q ss_pred             HHHHHHHHhhHHHHHHHhhccCCCCCccceeecccCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCccccccccCC
Q 023520          100 NLILLLQKHQKQWKEESSREQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNV  179 (281)
Q Consensus       100 lLt~llqk~q~~Wred~~~~Q~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lwp~qd~~~~~~n~~d~~~p~~~v~d~~~  179 (281)
                      .|.+.+.++...|++.+.+...                                                          
T Consensus        86 ~l~~~~~~~~~~l~~~l~~~~~----------------------------------------------------------  107 (178)
T PF07258_consen   86 ALCKVYEQNREELRKALSSTSF----------------------------------------------------------  107 (178)
T ss_dssp             HHTTTTTTTSSSSS------------------------------------------------------------------
T ss_pred             HHHHHHHhccHHHHHHHhcccc----------------------------------------------------------
Confidence            9999888888888877766654                                                          


Q ss_pred             CCCCCCCcccCCCCCCCCCCCcccccccccccc-cCCCCCC----cceEEeeeeccCCCCCCCceeEEEEecHHHHHHHH
Q 023520          180 APLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEK-SNSEPGN----RVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAML  254 (281)
Q Consensus       180 ~~~~p~~~q~d~~~~~n~v~LPrLksMdWr~d~-~~Sdp~~----RmAVInLKlQd~~k~~sge~eVkfeLsKeTLdtML  254 (281)
                                         ++|+|++++||++. .+|....    ++++++|++++.   .+..+.+.|++++++|..|+
T Consensus       108 -------------------~~~~l~d~~Wrl~~~~~s~~~~~~~~p~~~l~L~~~~~---~~~~~~~~~e~~~~~l~~l~  165 (178)
T PF07258_consen  108 -------------------SFPHLVDVDWRLDVQVSSSSLAKINEPVVILQLKTQNG---NGKEETVTFELSKEELQDLL  165 (178)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------------------cccccCCCcEEEEeeecccHhhhccCcEEEEEEEecCC---CCcCceEEEEECHHHHHHHH
Confidence                               68899999999999 4444443    567899999885   34558999999999999999


Q ss_pred             hhhhhHHHHhhh
Q 023520          255 RSLTYINEQLSS  266 (281)
Q Consensus       255 ~sL~~IrDQLSs  266 (281)
                      ..|..|++|+.+
T Consensus       166 ~~L~~a~~~l~~  177 (178)
T PF07258_consen  166 NELKDAQKQLDQ  177 (178)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

HCaRG is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals. HCaRG is a nuclear protein potentially involved in the control of cell proliferation [].; PDB: 2H2M_A.

>cd04756 Commd8 COMM_Domain containing protein 8

Probab=99.48  E-value=1.2e-13  Score=120.18  Aligned_cols=128  Identities=22%  Similarity=0.256  Sum_probs=103.2

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhhcCCCCccHHHHHHHHHHHHHhhHHHHHHHhhccCCCCCccceeecc
Q 023520           54 NLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLILLLQKHQKQWKEESSREQPLSGTSVSYHVKM  133 (281)
Q Consensus        54 ~l~S~~eldpll~~Lr~Lir~~v~~n~s~d~IlkLFP~d~~~~Lq~lLt~llqk~q~~Wred~~~~Q~~~~~~~~~~~~~  133 (281)
                      .+ +.+|+..++++|+.++|.++|.|++++++..-++     +|.+..+..|.+....|+++..+-..            
T Consensus        39 ~~-s~~e~~~~l~~l~~i~~~a~~~~l~~~~l~~~L~-----~L~~~~~~a~~~~~~~~~~ei~~~L~------------  100 (176)
T cd04756          39 IW-SLEEWTEVLESLATLFKQAVGKNSNDEEAKAQLS-----DLSSSHQEALLKCVKSRKEEIRQALV------------  100 (176)
T ss_pred             cC-CHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHh-----cCCHHHHHHHHHHHHHhhHHHHHHHH------------
Confidence            55 7799999999999999999999999988877774     58888889999999999999443332            


Q ss_pred             cCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCccccccccCCCCCCCCCcccCCCCCCCCCCCcccccccccccc-
Q 023520          134 SAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEK-  212 (281)
Q Consensus       134 ~~~~s~~~~~~~~~~~~lwp~qd~~~~~~n~~d~~~p~~~v~d~~~~~~~p~~~q~d~~~~~n~v~LPrLksMdWr~d~-  212 (281)
                                                                              +   ..|-.++|+|+||||+++. 
T Consensus       101 --------------------------------------------------------~---~~~~is~~~L~d~dWrv~l~  121 (176)
T cd04756         101 --------------------------------------------------------N---KTNSISSAQLQDFDWQLKLA  121 (176)
T ss_pred             --------------------------------------------------------H---HHhccCchhhccccCeeeee
Confidence                                                                    0   0011388999999999999 


Q ss_pred             cCCCCCCcce----EEeeeeccCCCCCCCceeEEEEecHHHHHHHHhhhhhHHH
Q 023520          213 SNSEPGNRVA----VISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINE  262 (281)
Q Consensus       213 ~~Sdp~~RmA----VInLKlQd~~k~~sge~eVkfeLsKeTLdtML~sL~~IrD  262 (281)
                      .+|+..++|+    .++|++++.    +..+.|.||||||+|++|+++|.-.+.
T Consensus       122 lSSd~~~~l~~P~~~L~L~v~~~----~~~~~v~~Ems~eel~~li~~Le~a~~  171 (176)
T cd04756         122 LSSDKLSSLQEPLLNLDLDVKEN----GILKPVSIEMNKEELQNLISSLEAANK  171 (176)
T ss_pred             echhhHHHhcCCeEEEEEEecCC----CCeeEEEEEEcHHHHHHHHHHHHHHHH
Confidence            7777777655    688888742    223799999999999999999988765

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04750 Commd2 COMM_Domain containing protein 2

Probab=99.44  E-value=1.2e-12  Score=112.72  Aligned_cols=143  Identities=17%  Similarity=0.217  Sum_probs=124.5

Q ss_pred             CCCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhh-hcCCCCccHHHHHHHHHHHHHhhHHHHHHH
Q 023520           38 KTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLL-KLFPPDLSLDLQSNLILLLQKHQKQWKEES  116 (281)
Q Consensus        38 ~tgl~~~~~~~~~~~L~l~S~~eldpll~~Lr~Lir~~v~~n~s~d~Il-kLFP~d~~~~Lq~lLt~llqk~q~~Wred~  116 (281)
                      ..|--....+.++..|++ +.+++..++++|..|+..|+..|++++++. .|++-.|+.++..+|...+.++...||+.+
T Consensus        11 ~~g~n~~~~~~~A~~l~i-~~~~vk~~v~aL~~ll~~a~K~~l~~~~~~~~L~~l~~~~e~~~~l~~~y~~~~~~l~~~l   89 (166)
T cd04750          11 FKGINQKKYEGAARKLEV-EVETVQHGVEALVYLLIESTKLKLSERDFQDSIEFLGFSDDLNEILLQLYESNRKEIRNIL   89 (166)
T ss_pred             HcCCChHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            467778888999999999 999999999999999999999999996665 599999999999999999999999999999


Q ss_pred             hhccCCCCCccceeecccCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCccccccccCCCCCCCCCcccCCCCCCC
Q 023520          117 SREQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGN  196 (281)
Q Consensus       117 ~~~Q~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lwp~qd~~~~~~n~~d~~~p~~~v~d~~~~~~~p~~~q~d~~~~~n  196 (281)
                      ...+.                                                                           
T Consensus        90 ~~~~~---------------------------------------------------------------------------   94 (166)
T cd04750          90 KELSP---------------------------------------------------------------------------   94 (166)
T ss_pred             HhcCC---------------------------------------------------------------------------
Confidence            98876                                                                           


Q ss_pred             CCCCcccccccccccc-cCCCCCCcce----EEeeeeccCCCCCCCceeEEEEecHHHHHHHHhhhhhHH
Q 023520          197 MGSLPCLKSMTWTMEK-SNSEPGNRVA----VISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYIN  261 (281)
Q Consensus       197 ~v~LPrLksMdWr~d~-~~Sdp~~RmA----VInLKlQd~~k~~sge~eVkfeLsKeTLdtML~sL~~Ir  261 (281)
                        .+|+|++|+||+|. .+|....||+    .++|++++...   ..+.+.||.+-++|.-|+..|..-.
T Consensus        95 --~lp~l~dleWRvDv~isS~~l~~~~~P~i~mkL~l~~~~~---~~~~~~l~td~~~l~~l~~eLe~Al  159 (166)
T cd04750          95 --DLPHYHNLEWRLDVQIASRSLRSQVKPVITMKLHLEDENK---KIETHLLQTDPANLVHLTQTLEQAL  159 (166)
T ss_pred             --CCccccCCceeEEeEEcchhhHhhcCceEEEEEEecCCCC---cccceEEEeCHHHHHHHHHHHHHHH
Confidence              89999999999999 6666666666    67888876433   3368999999999999998876543

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04749 Commd1_MURR1 COMM_Domain containing protein 1, also called Murr1

Probab=99.29  E-value=6.2e-11  Score=104.43  Aligned_cols=156  Identities=14%  Similarity=0.222  Sum_probs=104.9

Q ss_pred             HHHHHHhhcccCCCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhhcCC------CCccHHHHHH
Q 023520           27 DNILTTLWSTRKTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFP------PDLSLDLQSN  100 (281)
Q Consensus        27 ~~Ilq~lw~tR~tgl~~~~~~~~~~~L~l~S~~eldpll~~Lr~Lir~~v~~n~s~d~IlkLFP------~d~~~~Lq~l  100 (281)
                      +.|+|..|=--..-...-.+..+..  ++ .+++...+++.++.+|..+++.|+..+++-...-      -.++.+=-.-
T Consensus         6 ~gl~q~~~~~~~~ite~~l~~~l~~--~~-~~ed~ka~~ak~~~ii~saa~~dvD~~~L~~~Lt~q~~qQ~Gl~~eha~~   82 (174)
T cd04749           6 NGIAQKEYYGNAEITEELLRSELYP--ED-PLEEFRALHNKMRGLLKSIASADMDINQLEAFLTAQTKKQGGITSLQAAV   82 (174)
T ss_pred             HHHHHHHHccccchHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHhcCCChHHHHH
Confidence            4455554333122233445555555  55 4899999999999999999999998876655441      1122221223


Q ss_pred             HHHHHHHhhHHHHHHHhhccC-CCCCccceeecccCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCccccccccCC
Q 023520          101 LILLLQKHQKQWKEESSREQP-LSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNV  179 (281)
Q Consensus       101 Lt~llqk~q~~Wred~~~~Q~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lwp~qd~~~~~~n~~d~~~p~~~v~d~~~  179 (281)
                      |.       .-|+..-.+=|. +-+.                                                      
T Consensus        83 l~-------Kfwk~~~~klr~~l~~~------------------------------------------------------  101 (174)
T cd04749          83 IA-------KFWKVHKKKIRESLLAQ------------------------------------------------------  101 (174)
T ss_pred             HH-------HHHHHhHHHHHHHHHHH------------------------------------------------------
Confidence            33       345555333332 0000                                                      


Q ss_pred             CCCCCCCcccCCCCCCCCCCCcccccccccccc-cCCCCCC----cceEEeeeeccCCCCCCCceeEEEEecHHHHHHHH
Q 023520          180 APLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEK-SNSEPGN----RVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAML  254 (281)
Q Consensus       180 ~~~~p~~~q~d~~~~~n~v~LPrLksMdWr~d~-~~Sdp~~----RmAVInLKlQd~~k~~sge~eVkfeLsKeTLdtML  254 (281)
                                       ..-+|+|++|+||||. ++|+..+    ++|+++||+++.++   +...|.|+++++++++||
T Consensus       102 -----------------S~~~~~L~~l~WRVD~~tsS~~~~evn~P~~~l~L~v~~~~~---~~~~v~~emd~ek~~~lL  161 (174)
T cd04749         102 -----------------SRWENSLRGLSWRVDLKTQSRHIAQINSPVAIVELELGKTGQ---ESEFVCLEFDEAKVNRVL  161 (174)
T ss_pred             -----------------hhhcccccCCCCeeeeecccchhhhccCCeEEEEEeeccCCC---CCceEEEEecHHHHHHHH
Confidence                             0157899999999999 6666664    66689999987654   335999999999999999


Q ss_pred             hhhhhHHHHhhh
Q 023520          255 RSLTYINEQLSS  266 (281)
Q Consensus       255 ~sL~~IrDQLSs  266 (281)
                      ++|+.|++++++
T Consensus       162 ~eLk~iq~~m~~  173 (174)
T cd04749         162 KQLAEIQESLDA  173 (174)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999975

Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04758 Commd10 COMM_Domain containing protein 10

Probab=98.89  E-value=6e-08  Score=84.37  Aligned_cols=167  Identities=16%  Similarity=0.303  Sum_probs=111.9

Q ss_pred             HhhcCCCHHHHHHHHHHhhccc----CCCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhhcCCC
Q 023520           16 KLSAINSEQALDNILTTLWSTR----KTGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPP   91 (281)
Q Consensus        16 ~L~ka~Ske~v~~Ilq~lw~tR----~tgl~~~~~~~~~~~L~l~S~~eldpll~~Lr~Lir~~v~~n~s~d~IlkLFP~   91 (281)
                      .|-+++ .+....+|+.++..=    ..-........++....+ +.+++.-++.++..+++.+++.|++.+.+..    
T Consensus         7 ~ln~l~-~~~f~~ll~~i~~~l~~~~~~~~s~~~~~kl~~~~~~-~~~~l~~vi~~l~~il~~A~k~nl~~~~L~~----   80 (186)
T cd04758           7 LINSID-TEKFPRLLSRLFQKLHLKAERSFSEEEEEKLQEAFKL-LSQDLKLLLETISFILEQAAYHNLKPSNLQQ----   80 (186)
T ss_pred             HHhcCC-HHHHHHHHHHHHHHhcccccCCccHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHhcCCHHHHHH----
Confidence            333343 344666666665432    222336678889999999 8899999999999999999999998755443    


Q ss_pred             CccHHHHHHH--HHHHHHhhHHHHHHHhhccC-CCCCccceeecccCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCC
Q 023520           92 DLSLDLQSNL--ILLLQKHQKQWKEESSREQP-LSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLG  168 (281)
Q Consensus        92 d~~~~Lq~lL--t~llqk~q~~Wred~~~~Q~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lwp~qd~~~~~~n~~d~~  168 (281)
                          +|+.+-  ..-..-+...|...-..-.- +.                                             
T Consensus        81 ----~L~~l~l~~e~~~~~~~~w~~~~~~l~~~l~---------------------------------------------  111 (186)
T cd04758          81 ----QLRNILLLEDKASAFVNAWEAEGEDVLEKLR---------------------------------------------  111 (186)
T ss_pred             ----HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence                444321  00111123566654322211 00                                             


Q ss_pred             CccccccccCCCCCCCCCcccCCCCCCCCCCCcccccccccccc-cCCCCCC----cceEEeeeeccCCCCCCCceeEEE
Q 023520          169 ASASVIADTNVAPLAPMPLLRDGSPPGNMGSLPCLKSMTWTMEK-SNSEPGN----RVAVISLKLQDYTKSPSGETEVKF  243 (281)
Q Consensus       169 ~p~~~v~d~~~~~~~p~~~q~d~~~~~n~v~LPrLksMdWr~d~-~~Sdp~~----RmAVInLKlQd~~k~~sge~eVkf  243 (281)
                                                .+..+.|.|.||+||++. -+|+..+    +.++++||+.+..   +..+.|.|
T Consensus       112 --------------------------~~~l~~~~L~D~~Wrl~~~~sSs~~~~~~~P~~~L~L~~~~~~---g~~e~v~~  162 (186)
T cd04758         112 --------------------------SRILAPNQLEDVSWRLNLQMSSSTQAKLKSPLAVLELGVTSED---GNLEKINL  162 (186)
T ss_pred             --------------------------hccCCCCccccccceEEEEEccchhhhhcCCcEEEEeecCCCC---CCccceEE
Confidence                                      001267899999999999 4444554    4458999996632   13379999


Q ss_pred             EecHHHHHHHHhhhhhHHHHhhh
Q 023520          244 QLTKDTLEAMLRSLTYINEQLSS  266 (281)
Q Consensus       244 eLsKeTLdtML~sL~~IrDQLSs  266 (281)
                      |++++.|-..+..|..|+.||.+
T Consensus       163 E~t~~el~~l~~~le~~q~~ld~  185 (186)
T cd04758         163 EFNHEELLEFYNQLESIQEQLDS  185 (186)
T ss_pred             EEcHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999975

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04752 Commd4 COMM_Domain containing protein 4

Probab=98.81  E-value=2.2e-07  Score=80.45  Aligned_cols=147  Identities=16%  Similarity=0.249  Sum_probs=108.5

Q ss_pred             CCCChhHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhh-cCCCCccHHHHHHHHHHHHHhhHHHHHHHh
Q 023520           39 TGLRSAEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLK-LFPPDLSLDLQSNLILLLQKHQKQWKEESS  117 (281)
Q Consensus        39 tgl~~~~~~~~~~~L~l~S~~eldpll~~Lr~Lir~~v~~n~s~d~Ilk-LFP~d~~~~Lq~lLt~llqk~q~~Wred~~  117 (281)
                      ...+.+.....+....+ +..++.-+++||.-+++.+++.|++.+++.. |--=.|+.+-...+...+.++...=++-..
T Consensus        20 ~~~~~~~~~kl~~~~~~-~~~~lk~~va~l~fiL~~A~k~n~~~~~l~~eL~~lglp~e~~~~l~~~~~~~~~~l~~~l~   98 (174)
T cd04752          20 EGIDYEKVLKLTADAKF-ESGDVKASIAVLSFILSSAAKYNVDGESLSSELQQLGLPKEHATSLCRSYEEKQSKLQESLR   98 (174)
T ss_pred             ccCCHHHHHHHHHHhCC-CHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34777888888888999 7899999999999999999999999866555 222245555556666566666554433322


Q ss_pred             hccCCCCCccceeecccCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCccccccccCCCCCCCCCcccCCCCCCCC
Q 023520          118 REQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNM  197 (281)
Q Consensus       118 ~~Q~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lwp~qd~~~~~~n~~d~~~p~~~v~d~~~~~~~p~~~q~d~~~~~n~  197 (281)
                      ..-                                                                             
T Consensus        99 ~~~-----------------------------------------------------------------------------  101 (174)
T cd04752          99 ANS-----------------------------------------------------------------------------  101 (174)
T ss_pred             hcC-----------------------------------------------------------------------------
Confidence            221                                                                             


Q ss_pred             CCCcccccccccccccCCC-C----CCcceEEeeeeccCCCCCCCceeEEEEecHHHHHHHHhhhhhHHHHhh
Q 023520          198 GSLPCLKSMTWTMEKSNSE-P----GNRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLS  265 (281)
Q Consensus       198 v~LPrLksMdWr~d~~~Sd-p----~~RmAVInLKlQd~~k~~sge~eVkfeLsKeTLdtML~sL~~IrDQLS  265 (281)
                      ..+|+|.+|+||+|.+.|. .    .++.+.++|++.+...  +..++|.||++.+.|-.|+..|...+..+-
T Consensus       102 l~~~~L~d~~WRld~~lsSs~l~~~~~P~~~l~L~v~~~~~--~~~~~v~~e~s~~ql~~L~~eLe~A~~~m~  172 (174)
T cd04752         102 LRLSRLESVDWRVDYILSSSELQEVNEPLVQLRLKVRNADT--GEITPHPFSVSADKFRVLLAELKQAQTLME  172 (174)
T ss_pred             CCCCcccccceeeEEEEcchhhhhcCCCeEEEEEeeecCCC--CCcceEEEEecHHHHHHHHHHHHHHHHHHh
Confidence            2789999999999994443 3    4577788888876322  223799999999999999999999887764

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04748 Commd COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins

Probab=98.71  E-value=2.1e-08  Score=77.33  Aligned_cols=64  Identities=30%  Similarity=0.473  Sum_probs=54.0

Q ss_pred             CCcccccccccccc-cCCCCC----CcceEEeeeeccCCCCCCCceeEEEEecHHHHHHHHhhhhhHHHHh
Q 023520          199 SLPCLKSMTWTMEK-SNSEPG----NRVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQL  264 (281)
Q Consensus       199 ~LPrLksMdWr~d~-~~Sdp~----~RmAVInLKlQd~~k~~sge~eVkfeLsKeTLdtML~sL~~IrDQL  264 (281)
                      ++|.|+||+||+|. .+|...    .++++++|++.++..  +..+.|.||++++.|..|++.|..|++||
T Consensus        19 ~~~~L~d~~Wrld~~~sS~~~~~~~~P~~~~~L~l~~~~~--~~~~~v~~E~~~~~l~~l~~~L~~a~~~l   87 (87)
T cd04748          19 SLPQLVDFDWRLDVQISSSSLAKVKQPTILVQLKLQVGDN--NSSEKICFEMTKEELQNFLNKLKKIKAQL   87 (87)
T ss_pred             CCCeeeeeeeEEEEEEchhHHHHhhCCeEEEEEEEecCCC--CccceEEEEeCHHHHHHHHHHHHHHHhcC
Confidence            78999999999999 555443    366789999988654  23479999999999999999999999986

Presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. HCaRG, a nuclear protein that might be involved in cell proliferation, is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals.

>cd04753 Commd5_HCaRG COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene)

Probab=97.81  E-value=0.00014  Score=60.06  Aligned_cols=55  Identities=22%  Similarity=0.533  Sum_probs=38.8

Q ss_pred             CCcccccccccccc-cCCCCCCcce----EEeeeeccCCCCCCCceeEEEEecHHHH-------HHHHhhhhhH
Q 023520          199 SLPCLKSMTWTMEK-SNSEPGNRVA----VISLKLQDYTKSPSGETEVKFQLTKDTL-------EAMLRSLTYI  260 (281)
Q Consensus       199 ~LPrLksMdWr~d~-~~Sdp~~RmA----VInLKlQd~~k~~sge~eVkfeLsKeTL-------dtML~sL~~I  260 (281)
                      .+|+|++|+||+|+ .+|+..+||+    +++||++|      | +...||++-+..       -.||+.|..+
T Consensus        34 rlp~l~~l~WRVDv~lSSs~l~~~~~PtI~LkLkl~d------g-~~~~fe~~~~kF~~Lry~~a~~l~em~~l  100 (110)
T cd04753          34 RLPHLEDFKWRVDVAISTSSLSRVLQPSILMEMKLSD------G-KSHRFEVPVAKFHELRYNVALILKEMNDL  100 (110)
T ss_pred             CCcccccCcceEEEEEchhhhhcccCCeEEEEEEecC------C-CeEEEEeeHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999 4454455555    67777754      3 388899987764       4455555444

HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04755 Commd7 COMM_Domain containing protein 7

Probab=97.71  E-value=0.0011  Score=58.95  Aligned_cols=140  Identities=19%  Similarity=0.206  Sum_probs=98.1

Q ss_pred             hHHHHHhhhcCCCCCCChhHHHHHHHHHHHHHHhhcCChhhhhhcCCCCccHHHHHHHH--HHHHHhhHHHHHHHhhccC
Q 023520           44 AEKSHVQSLLNLPSPGQVDPVVASLRSLIRKCVRENFTSDDLLKLFPPDLSLDLQSNLI--LLLQKHQKQWKEESSREQP  121 (281)
Q Consensus        44 ~~~~~~~~~L~l~S~~eldpll~~Lr~Lir~~v~~n~s~d~IlkLFP~d~~~~Lq~lLt--~llqk~q~~Wred~~~~Q~  121 (281)
                      ...+.++..+.+ +..++.-++++|.-+++-+++.|++.+.+.        .+|+.+=-  .=---+...|++....=+-
T Consensus        34 ~~~~ef~~~~~~-~~~dlk~vi~~l~fi~~~A~k~nv~~~~L~--------~eL~~lgL~~eka~~~~~~w~~~~~~L~~  104 (180)
T cd04755          34 NQLDEFAGENGI-SLGPLKNIVKSILLVPNGALKRNLTAEQLR--------EDLIQLGLSEEKASYFSEQWKQHYSTLSR  104 (180)
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHcCCCHHHHH--------HHHHHcCCCHHHHHHHHHHHHHhHHHHHH
Confidence            444558999999 999999999999999999999999986543        34433211  0001344678877554332


Q ss_pred             -CCCCccceeecccCCCCCCcccccccCCCCCCCCCCCCCcCCCCCCCCccccccccCCCCCCCCCcccCCCCCCCCCCC
Q 023520          122 -LSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFTNFNHNDLGASASVIADTNVAPLAPMPLLRDGSPPGNMGSL  200 (281)
Q Consensus       122 -~~~~~~~~~~~~~~~~s~~~~~~~~~~~~lwp~qd~~~~~~n~~d~~~p~~~v~d~~~~~~~p~~~q~d~~~~~n~v~L  200 (281)
                       +                                                                       -+++..+
T Consensus       105 ~~-----------------------------------------------------------------------~~~tL~~  113 (180)
T cd04755         105 SA-----------------------------------------------------------------------VGQTLMV  113 (180)
T ss_pred             HH-----------------------------------------------------------------------HHcccCc
Confidence             0                                                                       0112366


Q ss_pred             cccccccccccccCCCC-CC--cceEEeeeeccCCCCCCCceeEEEEecHHHHHHHHhhhhhHHHHhh
Q 023520          201 PCLKSMTWTMEKSNSEP-GN--RVAVISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLS  265 (281)
Q Consensus       201 PrLksMdWr~d~~~Sdp-~~--RmAVInLKlQd~~k~~sge~eVkfeLsKeTLdtML~sL~~IrDQLS  265 (281)
                      .+|+||.||++.+.|.+ ..  .-++|+||+... + .+..+.|-||++.+.+--++..|..|+.++.
T Consensus       114 ~qL~d~~Wr~~~~~sSS~~~~~~~p~vqLkl~~~-~-~~~~e~v~~E~t~~qF~~f~~elk~a~a~me  179 (180)
T cd04755         114 NQLVDMEWKFGVTAGSSELQKVGSIFLQLKLVVR-K-GNQTENVYMELTLPQFYSFLHEMERAKASLE  179 (180)
T ss_pred             cccccccceeeeEecchhhhhcCCcEEEEEEEec-C-CCCceeEEEEEcHHHHHHHHHHHHHHHHHhc
Confidence            79999999999954433 22  235899999764 2 1223688899999999999999999998763

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04751 Commd3 COMM_Domain containing protein 3

Probab=96.62  E-value=0.0069  Score=48.35  Aligned_cols=65  Identities=17%  Similarity=0.398  Sum_probs=48.9

Q ss_pred             CCcccccccccccc-cCCCCCCcce----EEeeeeccCCCCCCCceeEEEEecHHHHHHHHhhhhhHHHHhhhh
Q 023520          199 SLPCLKSMTWTMEK-SNSEPGNRVA----VISLKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQLSSL  267 (281)
Q Consensus       199 ~LPrLksMdWr~d~-~~Sdp~~RmA----VInLKlQd~~k~~sge~eVkfeLsKeTLdtML~sL~~IrDQLSsv  267 (281)
                      .+|++++++||+|. -+|.....+.    .|+|++++.    ++.+.+.|+.+-|+|--|+.-|.-+..++-.+
T Consensus        24 ~~p~l~dv~WRld~~lsS~~l~~~~~p~~~i~L~~~~~----~~~~~i~f~c~~e~L~~Li~~Lk~A~~~~e~~   93 (95)
T cd04751          24 SFPHITDVNWRLDYVVSSKHLGKVNQPIYLIQLSTENG----ENKPDINFTCTLEQLQDLVNKLKDAAKNIERA   93 (95)
T ss_pred             CCCceecCceEEEEEEcccccCcccceeEEEEEeccCC----CCcceEEEEeCHHHHHHHHHHHHHHHHHHHHh
Confidence            79999999999999 3343444343    577777642    22579999999999999999888877766443

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04754 Commd6 COMM_Domain containing protein 6

Probab=95.30  E-value=0.026  Score=45.61  Aligned_cols=62  Identities=15%  Similarity=0.283  Sum_probs=45.8

Q ss_pred             CCcccccccccccc-cCCCCCCcce--EEe--eeeccCCCCCCCceeEEEEecHHHHHHHHhhhhhHHHH
Q 023520          199 SLPCLKSMTWTMEK-SNSEPGNRVA--VIS--LKLQDYTKSPSGETEVKFQLTKDTLEAMLRSLTYINEQ  263 (281)
Q Consensus       199 ~LPrLksMdWr~d~-~~Sdp~~RmA--VIn--LKlQd~~k~~sge~eVkfeLsKeTLdtML~sL~~IrDQ  263 (281)
                      ..-.|+||+|++-. .+|+....+.  +++  |++.++   .+..+++.|||+++-+-.+++.|..|+.-
T Consensus        18 ~~~qLvDm~WKlgva~sSd~~~sl~~Pfl~l~L~V~~~---~G~~~~~~~EmTlpEFq~f~~~~~~~~a~   84 (86)
T cd04754          18 NIGQLVDFKWKLGMAVSSDTCRSLNSPYVAVTLKVADP---SGQVVTKSFEMTIPEFQNFSRQFKEMAAV   84 (86)
T ss_pred             cccceEeeeeeEeEEEechhhhhcCCceEEEEEEEEcc---CCCccceEEEEcHHHHHHHHHHHHHHHHh
Confidence            34589999999999 6666655333  666  555542   12337789999999999999999988753

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 40/296 (13%), Positives = 86/296 (29%), Gaps = 97/296 (32%)

Query: 9   TLYLQLHKLSAINSEQALDNILTTLWSTRKTGLRS--AEKSHVQSLL---NLPSPGQVDP 63
            L  Q+       S+ + +  L       +  LR     K +   LL   N+ +    + 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 64  ---------------VVASLRSLIRKCVR-----ENFTSDDLLKLFPPDLSLDLQSNLIL 103
                          V   L +     +         T D++  L               
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-------------- 307

Query: 104 LLQKHQKQWKEESSREQPLSGTSVSYHVKMSAAPSFRPFLSSVIATPLWPHQDDPFT--N 161
                  ++ +   ++ P    + +            P   S+IA  +   +D   T  N
Sbjct: 308 ------LKYLDCRPQDLPREVLTTN------------PRRLSIIAESI---RDGLATWDN 346

Query: 162 FNHNDLGASASVIADTNVAPLAP---------MPLLRDGS--PPGNMGSLPCLKSMTWTM 210
           + H +     ++I ++++  L P         + +    +  P   +  +       W  
Sbjct: 347 WKHVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-------WF- 397

Query: 211 EKSNSEPGNRVAVISLKLQDYT---KSPSGET------EVKFQLTKDTLEAMLRSL 257
           +   S+    V     KL  Y+   K P   T       ++ ++  +   A+ RS+
Sbjct: 398 DVIKSDVMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00