Citrus Sinensis ID: 023537

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
MIQLRFLKSPLLSSSNILSNFSPKPRTGTLLPHPVTKFKPLSQMDSYSTTTTSSSSSSSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLVWLMLNSFISMDYS
ccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEcccccccEEEEccccccHHHHHHHHHHcccEEEEEEcccccHHHHHcHHHHHHHccccEEEEcccccccccEEcccccEEEEccEEEEEEEcccccccccEEEEccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHcccccccEEEEcccccccccccHHHHHHcccccccHHHHHHHHHHcccccccc
cccHHHHHHHHHHHHHHHHHccccccccEcccccccccccHHHHHHHccccccccccccccHHHHccccccccEEEEEEcccccccEEEEEccccHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHccccEEEccccccccccEEEccccEEEEEEEEEEEEEcccccccEEEEEEccccccccccEEEEccEEEEccccccccccccHHHHHHHHHHHHHccccccEEEccccccccEEEEHHHHHHccccccccHHHHHHHHccccccccc
miqlrflkspllsssnilsnfspkprtgtllphpvtkfkplsqmdsysttttssssssskLLFRQTFEKESSTYTYLLAdvnhpdkpallidpvdktvdRDLNVIKELGLKLVYAMNThvhadhvtgtglikskvpgvKSIISkasgskadlhvehgdkvsfgdlflevratpghtlgcvtyvsgegpdqpqprmaftgdallirgcgrtdfqggsssqLYKSVHSQIftlpkdtliypahdykgftvstvgeeiqynprltkdEVLVWLMLNSFISMDYS
miqlrflkspllsssnilsnfspkprtgtllphpVTKFKPLSQMDSysttttssssssskLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHvtgtglikskvPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIqynprltkdevLVWLMLNSFISMDYS
MIQLRFlkspllsssnilsnfspkPRTGTLLPHPVTKFKPLSQMDsysttttsssssssKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVksiiskasgskaDLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLVWLMLNSFISMDYS
**********************************************************************SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK*****ADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVS***********AFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLVWLMLNSFIS****
*************************************************************LFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLVWLMLNSFISMD**
MIQLRFLKSPLLSSSNILSNFSPKPRTGTLLPHPVTKFKPLSQ*******************FRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLVWLMLNSFISMDYS
*IQ*RFLKSPLLSSSNILSNFSPKPRTGTLLPHPVTKFKPLSQMDSYSTT********SKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLVWLMLNSFISMDYS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIQLRFLKSPLLSSSNILSNFSPKPRTGTLLPHPVTKFKPLSQMDSYSTTTTSSSSSSSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLVWLMLNSFISMDYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query281 2.2.26 [Sep-21-2011]
Q9C8L4294 Hydroxyacylglutathione hy yes no 0.761 0.727 0.837 1e-104
Q9DCM0254 Protein ETHE1, mitochondr yes no 0.722 0.799 0.601 4e-68
O95571254 Protein ETHE1, mitochondr yes no 0.761 0.842 0.578 4e-68
Q3T094254 Protein ETHE1, mitochondr yes no 0.711 0.787 0.586 6e-67
Q8UAA9431 Beta-lactamase hydrolase- yes no 0.733 0.477 0.303 1e-19
Q3B7M2308 Hydroxyacylglutathione hy no no 0.590 0.538 0.312 2e-16
O24496258 Hydroxyacylglutathione hy no no 0.576 0.627 0.331 6e-16
Q0AM20256 Hydroxyacylglutathione hy no no 0.601 0.660 0.354 2e-15
Q9PFB0431 Beta-lactamase hydrolase- yes no 0.654 0.426 0.285 4e-15
B1WUT9257 Hydroxyacylglutathione hy no no 0.587 0.642 0.323 8e-15
>sp|Q9C8L4|GLO2O_ARATH Hydroxyacylglutathione hydrolase 3, mitochondrial OS=Arabidopsis thaliana GN=GLY3 PE=1 SV=3 Back     alignment and function desciption
 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/215 (83%), Positives = 197/215 (91%), Gaps = 1/215 (0%)

Query: 60  KLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTH 119
           KLLFRQ FE ESST+TYLLADV+HPDKPALLIDPVDKTVDRDL +I ELGLKL+YAMNTH
Sbjct: 51  KLLFRQLFENESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTH 110

Query: 120 VHADHVTGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGC 179
           VHADHVTGTGL+K+K+PGVKS+ISKASGSKADL +E GDKVS GD++LEVRATPGHT GC
Sbjct: 111 VHADHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGC 170

Query: 180 VTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYP 239
           VTYV+GEG DQPQPRMAFTGDA+LIRGCGRTDFQ GSS QLY+SVHSQIFTLPKDTLIYP
Sbjct: 171 VTYVTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKDTLIYP 230

Query: 240 AHDYKGFTVSTVGEEIQYNPRLTKD-EVLVWLMLN 273
           AHDYKGF VSTVGEE+Q+NPRLTKD E    +M N
Sbjct: 231 AHDYKGFEVSTVGEEMQHNPRLTKDKETFKTIMSN 265
Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: 6
>sp|Q9DCM0|ETHE1_MOUSE Protein ETHE1, mitochondrial OS=Mus musculus GN=Ethe1 PE=1 SV=2 Back     alignment and function description
>sp|O95571|ETHE1_HUMAN Protein ETHE1, mitochondrial OS=Homo sapiens GN=ETHE1 PE=1 SV=2 Back     alignment and function description
>sp|Q3T094|ETHE1_BOVIN Protein ETHE1, mitochondrial OS=Bos taurus GN=ETHE1 PE=2 SV=1 Back     alignment and function description
>sp|Q8UAA9|BLH_AGRT5 Beta-lactamase hydrolase-like protein OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=blh PE=2 SV=1 Back     alignment and function description
>sp|Q3B7M2|GLO2_BOVIN Hydroxyacylglutathione hydrolase, mitochondrial OS=Bos taurus GN=HAGH PE=2 SV=3 Back     alignment and function description
>sp|O24496|GLO2C_ARATH Hydroxyacylglutathione hydrolase cytoplasmic OS=Arabidopsis thaliana GN=GLX2-2 PE=1 SV=2 Back     alignment and function description
>sp|Q0AM20|GLO2_MARMM Hydroxyacylglutathione hydrolase OS=Maricaulis maris (strain MCS10) GN=gloB PE=3 SV=1 Back     alignment and function description
>sp|Q9PFB0|BLH_XYLFA Beta-lactamase hydrolase-like protein OS=Xylella fastidiosa (strain 9a5c) GN=blh PE=2 SV=1 Back     alignment and function description
>sp|B1WUT9|GLO2_CYAA5 Hydroxyacylglutathione hydrolase OS=Cyanothece sp. (strain ATCC 51142) GN=gloB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
224056583251 predicted protein [Populus trichocarpa] 0.761 0.852 0.873 1e-107
388499798288 unknown [Lotus japonicus] 0.782 0.763 0.838 1e-106
224085383265 predicted protein [Populus trichocarpa] 0.790 0.837 0.819 1e-106
255558692301 glyoxalase II, putative [Ricinus communi 0.911 0.850 0.769 1e-106
225446805269 PREDICTED: hydroxyacylglutathione hydrol 0.765 0.799 0.851 1e-105
302143529258 unnamed protein product [Vitis vinifera] 0.765 0.833 0.851 1e-105
225462956286 PREDICTED: hydroxyacylglutathione hydrol 0.761 0.748 0.836 1e-104
356549576377 PREDICTED: hydroxyacylglutathione hydrol 0.733 0.546 0.859 1e-103
296082824247 unnamed protein product [Vitis vinifera] 0.736 0.838 0.855 1e-103
449456532295 PREDICTED: hydroxyacylglutathione hydrol 0.918 0.874 0.75 1e-102
>gi|224056583|ref|XP_002298922.1| predicted protein [Populus trichocarpa] gi|222846180|gb|EEE83727.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/214 (87%), Positives = 204/214 (95%)

Query: 53  SSSSSSSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKL 112
           ++SS SSKL FRQ FEKESSTYTYLLADV+HPDKPALLIDPVDKTVDRDL+++KELGLKL
Sbjct: 5   TASSQSSKLFFRQLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKL 64

Query: 113 VYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRAT 172
           +YA+NTHVHADH+TGTGLIK+K PGVKSIISKASGSKAD+ VE GDKVSFGDLFLEVRAT
Sbjct: 65  IYALNTHVHADHITGTGLIKTKSPGVKSIISKASGSKADILVEPGDKVSFGDLFLEVRAT 124

Query: 173 PGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLP 232
           PGHT GCVTYV+G+GPDQPQPRMAFTGDALLIRGCGRTDFQGGSS QLYKSVHSQIFTLP
Sbjct: 125 PGHTSGCVTYVTGDGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSLQLYKSVHSQIFTLP 184

Query: 233 KDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEV 266
           KDTLIYPAHDYKGF+VSTV EE+ YNPRLTK++V
Sbjct: 185 KDTLIYPAHDYKGFSVSTVEEEMLYNPRLTKNQV 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388499798|gb|AFK37965.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224085383|ref|XP_002307560.1| predicted protein [Populus trichocarpa] gi|222857009|gb|EEE94556.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255558692|ref|XP_002520370.1| glyoxalase II, putative [Ricinus communis] gi|223540417|gb|EEF41986.1| glyoxalase II, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225446805|ref|XP_002279121.1| PREDICTED: hydroxyacylglutathione hydrolase 3, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143529|emb|CBI22090.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462956|ref|XP_002270140.1| PREDICTED: hydroxyacylglutathione hydrolase 3, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549576|ref|XP_003543168.1| PREDICTED: hydroxyacylglutathione hydrolase 3, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|296082824|emb|CBI22125.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449456532|ref|XP_004146003.1| PREDICTED: hydroxyacylglutathione hydrolase 3, mitochondrial-like [Cucumis sativus] gi|449503644|ref|XP_004162105.1| PREDICTED: hydroxyacylglutathione hydrolase 3, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query281
TAIR|locus:2024922294 GLY3 "AT1G53580" [Arabidopsis 0.871 0.833 0.700 1.4e-89
ZFIN|ZDB-GENE-040426-2503279 ethe1 "ethylmalonic encephalop 0.722 0.727 0.612 2.4e-60
UNIPROTKB|E2RFL0254 ETHE1 "Uncharacterized protein 0.729 0.807 0.565 1.4e-57
UNIPROTKB|O95571254 ETHE1 "Protein ETHE1, mitochon 0.729 0.807 0.570 2.8e-57
MGI|MGI:1913321254 Ethe1 "ethylmalonic encephalop 0.690 0.763 0.589 9.6e-57
RGD|1311034254 Ethe1 "ethylmalonic encephalop 0.690 0.763 0.584 2e-56
UNIPROTKB|Q3T094254 ETHE1 "Protein ETHE1, mitochon 0.690 0.763 0.569 5.3e-56
FB|FBgn0050022279 CG30022 [Drosophila melanogast 0.718 0.724 0.518 2.4e-51
WB|WBGene00007886237 ethe-1 [Caenorhabditis elegans 0.743 0.881 0.472 3.7e-48
UNIPROTKB|Q83D53233 CBU_0890 "Zn-dependent hydrola 0.679 0.819 0.412 1.9e-35
TAIR|locus:2024922 GLY3 "AT1G53580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 173/247 (70%), Positives = 194/247 (78%)

Query:    32 PHPVTKFKPLSQMDXXXXXXXXXXXXXXKLLFRQTFEKESSTYTYLLADVNHPDKPALLI 91
             P P+ +  P + +               KLLFRQ FE ESST+TYLLADV+HPDKPALLI
Sbjct:    24 PRPL-RSPPPTFLRSVMGSSSSFSSSSSKLLFRQLFENESSTFTYLLADVSHPDKPALLI 82

Query:    92 DPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVXXXXXXXXXXXXD 151
             DPVDKTVDRDL +I ELGLKL+YAMNTHVHADHVTGTGL+K+K+PGV            D
Sbjct:    83 DPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKASGSKAD 142

Query:   152 LHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTD 211
             L +E GDKVS GD++LEVRATPGHT GCVTYV+GEG DQPQPRMAFTGDA+LIRGCGRTD
Sbjct:   143 LFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVLIRGCGRTD 202

Query:   212 FQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKD-EVLVWL 270
             FQ GSS QLY+SVHSQIFTLPKDTLIYPAHDYKGF VSTVGEE+Q+NPRLTKD E    +
Sbjct:   203 FQEGSSDQLYESVHSQIFTLPKDTLIYPAHDYKGFEVSTVGEEMQHNPRLTKDKETFKTI 262

Query:   271 MLNSFIS 277
             M N  +S
Sbjct:   263 MSNLNLS 269
GO:0004416 "hydroxyacylglutathione hydrolase activity" evidence=ISS
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=ISS
GO:0009651 "response to salt stress" evidence=IEP
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IDA
GO:0047951 "glutathione thiolesterase activity" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0009960 "endosperm development" evidence=IMP
GO:0048316 "seed development" evidence=IMP
GO:0050313 "sulfur dioxygenase activity" evidence=IDA
GO:0055114 "oxidation-reduction process" evidence=IDA
ZFIN|ZDB-GENE-040426-2503 ethe1 "ethylmalonic encephalopathy 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFL0 ETHE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O95571 ETHE1 "Protein ETHE1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913321 Ethe1 "ethylmalonic encephalopathy 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311034 Ethe1 "ethylmalonic encephalopathy 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T094 ETHE1 "Protein ETHE1, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0050022 CG30022 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00007886 ethe-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q83D53 CBU_0890 "Zn-dependent hydrolase, glyoxalase II family" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O95571ETHE1_HUMAN3, ., -, ., -, ., -0.57840.76150.8425yesno
Q9DCM0ETHE1_MOUSE3, ., -, ., -, ., -0.60180.72240.7992yesno
Q9C8L4GLO2O_ARATH3, ., 1, ., 2, ., 60.83720.76150.7278yesno
Q3T094ETHE1_BOVIN3, ., -, ., -, ., -0.58650.71170.7874yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.20.976
3rd Layer3.1.2.60.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
PLN02962251 PLN02962, PLN02962, hydroxyacylglutathione hydrola 1e-162
COG0491252 COG0491, GloB, Zn-dependent hydrolases, including 6e-31
TIGR03413248 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrol 4e-30
PLN02469258 PLN02469, PLN02469, hydroxyacylglutathione hydrola 5e-25
smart00849177 smart00849, Lactamase_B, Metallo-beta-lactamase su 4e-24
PRK10241251 PRK10241, PRK10241, hydroxyacylglutathione hydrola 1e-15
PLN02398329 PLN02398, PLN02398, hydroxyacylglutathione hydrola 3e-13
pfam00753148 pfam00753, Lactamase_B, Metallo-beta-lactamase sup 3e-11
>gnl|CDD|178547 PLN02962, PLN02962, hydroxyacylglutathione hydrolase Back     alignment and domain information 
 Score =  451 bits (1161), Expect = e-162
 Identities = 194/215 (90%), Positives = 208/215 (96%)

Query: 51  TTSSSSSSSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL 110
           ++SSSSSSSKLLFRQ FEKESSTYTYLLADV+HPDKPALLIDPVDKTVDRDL+++KELGL
Sbjct: 1   SSSSSSSSSKLLFRQLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGL 60

Query: 111 KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVR 170
           KL+YAMNTHVHADHVTGTGL+K+K+PGVKSIISKASGSKADL VE GDK+ FGDL+LEVR
Sbjct: 61  KLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKASGSKADLFVEPGDKIYFGDLYLEVR 120

Query: 171 ATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFT 230
           ATPGHT GCVTYV+GEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSS QLYKSVHSQIFT
Sbjct: 121 ATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSDQLYKSVHSQIFT 180

Query: 231 LPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDE 265
           LPKDTLIYPAHDYKGFTVSTVGEE+ YNPRLTKDE
Sbjct: 181 LPKDTLIYPAHDYKGFTVSTVGEEMLYNPRLTKDE 215

Length = 251
>gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>gnl|CDD|234201 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase Back     alignment and domain information
>gnl|CDD|178088 PLN02469, PLN02469, hydroxyacylglutathione hydrolase Back     alignment and domain information
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|182327 PRK10241, PRK10241, hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|215223 PLN02398, PLN02398, hydroxyacylglutathione hydrolase Back     alignment and domain information
>gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 281
PLN02962251 hydroxyacylglutathione hydrolase 100.0
KOG0814237 consensus Glyoxylase [General function prediction 100.0
PLN02469258 hydroxyacylglutathione hydrolase 100.0
PLN02398329 hydroxyacylglutathione hydrolase 100.0
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 100.0
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 100.0
KOG0813265 consensus Glyoxylase [General function prediction 99.98
PRK11921 394 metallo-beta-lactamase/flavodoxin domain-containin 99.9
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 99.89
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 99.87
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.86
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 99.83
COG0426 388 FpaA Uncharacterized flavoproteins [Energy product 99.79
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 99.72
PRK11539755 ComEC family competence protein; Provisional 99.72
TIGR00649 422 MG423 conserved hypothetical protein. Contains an 99.67
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 99.67
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 99.58
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.45
PRK00685228 metal-dependent hydrolase; Provisional 99.43
TIGR03675 630 arCOG00543 arCOG00543 universal archaeal KH-domain 99.41
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.4
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.39
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 99.34
PRK04286298 hypothetical protein; Provisional 99.32
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 99.28
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 99.28
PRK02126334 ribonuclease Z; Provisional 99.27
PRK02113252 putative hydrolase; Provisional 99.24
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.23
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.22
COG1236 427 YSH1 Predicted exonuclease of the beta-lactamase f 99.21
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.15
COG1782 637 Predicted metal-dependent RNase, consists of a met 99.06
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 99.01
PRK00055270 ribonuclease Z; Reviewed 98.98
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 98.87
KOG4736302 consensus Uncharacterized conserved protein [Funct 98.75
COG2015 655 Alkyl sulfatase and related hydrolases [Secondary 98.61
KOG1136 501 consensus Predicted cleavage and polyadenylation s 98.53
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 98.52
KOG1135 764 consensus mRNA cleavage and polyadenylation factor 98.25
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 98.25
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 98.21
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 98.17
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 98.14
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 98.04
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 97.67
KOG1361 481 consensus Predicted hydrolase involved in interstr 97.23
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 96.97
PF1369163 Lactamase_B_4: tRNase Z endonuclease 94.91
PF14234285 DUF4336: Domain of unknown function (DUF4336) 94.21
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 89.94
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information 
Probab=100.00  E-value=7.5e-43  Score=304.18  Aligned_cols=226  Identities=86%  Similarity=1.285  Sum_probs=199.3

Q ss_pred             CCCCCCCeEEEEEEeCCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHh
Q 023537           54 SSSSSSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS  133 (281)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~  133 (281)
                      ++.++..|+|++++....++|||+|.+.+.++++++|||||....+.+++.+++.+.++++|++||.|+||++|+..|++
T Consensus         4 ~~~~~~~m~~~~~~~~~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~   83 (251)
T PLN02962          4 SSSSSSKLLFRQLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKT   83 (251)
T ss_pred             CCCCCCceEEEEeecCCceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHH
Confidence            44556789999999999999999998732114679999999656788899999999999999999999999999999999


Q ss_pred             hCCCCeEEecccCCCCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCC
Q 023537          134 KVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQ  213 (281)
Q Consensus       134 ~~p~~~i~~~~~~~~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~  213 (281)
                      ++|++++++++......+..+.+|+.+.+|+..+++++|||||+|+++|++++....++.+++|+||+++..++++++++
T Consensus        84 ~~~~a~v~~~~~~~~~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~~  163 (251)
T PLN02962         84 KLPGVKSIISKASGSKADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDFQ  163 (251)
T ss_pred             HCCCCeEEeccccCCCCCEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCCC
Confidence            88899999988766666778999999999999999999999999999999864211245679999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCceEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHH-HHHhcCCCCCC
Q 023537          214 GGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLV-WLMLNSFISMD  279 (281)
Q Consensus       214 ~~~~~~~~~sl~~~l~~l~~~~~v~PgHG~~~~~~~~~~~~~~~n~~l~~~~~~~-~~~~~~~~~~~  279 (281)
                      +++..++++|+++++..|+++++|+||||+.+.+.++++++++.|||+...+++| +.|++..+|+|
T Consensus       164 ~g~~~~l~~Sl~~~l~~L~~~~~i~PGHg~~~~~~tti~~e~~~n~~l~~~~~~fv~~~~~~~~~~p  230 (251)
T PLN02962        164 GGSSDQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEMLYNPRLTKDEETFKTIMENLNLPYP  230 (251)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCeEEECCCCCCCCCCcCHHHHHhhCcccCCCHHHHHHHHhhCCCCCc
Confidence            9999999999977899999998999999987767899999999999999888889 88888888887

>KOG0814 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>KOG4736 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>PF13691 Lactamase_B_4: tRNase Z endonuclease Back     alignment and domain information
>PF14234 DUF4336: Domain of unknown function (DUF4336) Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
2gcu_A245 X-Ray Structure Of Gene Product From Arabidopsis Th 1e-96
4efz_A298 Crystal Structure Of A Hypothetical Metallo-Beta-La 8e-15
1qh3_A260 Human Glyoxalase Ii With Cacodylate And Acetate Ion 1e-13
3r2u_A 466 2.1 Angstrom Resolution Crystal Structure Of Metall 6e-13
1xm8_A254 X-Ray Structure Of Glyoxalase Ii From Arabidopsis T 3e-11
3tp9_A 474 Crystal Structure Of Alicyclobacillus Acidocaldariu 4e-09
2xf4_A210 Crystal Structure Of Salmonella Enterica Serovar Ty 8e-09
2p18_A311 Crystal Structure Of The Leishmania Infantum Glyoxa 1e-08
2qed_A258 Crystal Structure Of Salmonella Thyphimurium Lt2 Gl 5e-08
2gmn_A274 Crystal Structure Of Bjp-1, A Subclass B3 Metallo-b 2e-04
3lvz_A294 New Refinement Of The Crystal Structure Of Bjp-1, A 2e-04
>pdb|2GCU|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At1g53580 Length = 245 Back     alignment and structure 
Iteration: 1

 Score =  349 bits (895), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/219 (77%), Positives = 187/219 (85%), Gaps = 1/219 (0%)
Query: 60  KLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTH 119
           KLLFRQ FE ESST+TYLLADV+HPDKPALLIDPVDKTVDRDL +I ELGLKL+YAMNTH
Sbjct: 2   KLLFRQLFENESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTH 61
Query: 120 VHADHVTGTGLIKSKVPGVXXXXXXXXXXXXDLHVEHGDKVSFGDLFLEVRATPGHTLGC 179
           VHADHVTGTGL+K+K+PGV            DL +E GDKVS GD++LEVRATPGHT GC
Sbjct: 62  VHADHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGC 121
Query: 180 VTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYP 239
           VTYV+GEG DQPQPRMAFTGDA+LIRGCGRTDFQ GSS QLY+SVHSQIFTLPKDTLIYP
Sbjct: 122 VTYVTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKDTLIYP 181
Query: 240 AHDYKGFTVSTVGEEIQYNPRLTKD-EVLVWLMLNSFIS 277
           AHDYKGF VSTVGEE+Q+NPRLTKD E    +M N  +S
Sbjct: 182 AHDYKGFEVSTVGEEMQHNPRLTKDKETFKTIMSNLNLS 220
>pdb|4EFZ|A Chain A, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase From Burkholderia Pseudomallei Length = 298 Back     alignment and structure
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions Present In The Active Site Length = 260 Back     alignment and structure
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp. Aureus Col Length = 466 Back     alignment and structure
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350 Length = 254 Back     alignment and structure
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius Protein With Beta-Lactamase And Rhodanese Domains Length = 474 Back     alignment and structure
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar Typhimurium Ycbl Length = 210 Back     alignment and structure
>pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii Length = 311 Back     alignment and structure
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2 Glyoxalase Ii Length = 258 Back     alignment and structure
>pdb|2GMN|A Chain A, Crystal Structure Of Bjp-1, A Subclass B3 Metallo-beta-lactamase Of Bradyrhizobium Japonicum Length = 274 Back     alignment and structure
>pdb|3LVZ|A Chain A, New Refinement Of The Crystal Structure Of Bjp-1, A Subclass B3 Metallo-Beta-Lactamase Of Bradyrhizobium Japonicum Length = 294 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query281
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 1e-115
4efz_A298 Metallo-beta-lactamase family protein; structural 2e-75
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 1e-60
3r2u_A 466 Metallo-beta-lactamase family protein; structural 6e-58
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 7e-53
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 4e-41
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 7e-41
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 3e-38
1xm8_A254 Glyoxalase II; structural genomics, protein struct 1e-36
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 3e-33
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 1e-28
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 3e-23
2p97_A201 Hypothetical protein; putative metal-dependent hyd 5e-19
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 2e-18
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 3e-18
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 9e-17
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 6e-15
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 4e-13
3adr_A261 Putative uncharacterized protein ST1585; quorum se 8e-13
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 2e-11
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 9e-11
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 2e-10
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 2e-09
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 1e-08
1ztc_A221 Hypothetical protein TM0894; structural genomics, 1e-08
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 2e-07
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactama 2e-06
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 3e-06
2ohh_A 404 Type A flavoprotein FPRA; beta-lactamase like doma 7e-06
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 1e-05
1ycg_A 398 Nitric oxide reductase; DIIRON site, oxidoreductas 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Length = 245 Back     alignment and structure
 Score =  329 bits (845), Expect = e-115
 Identities = 177/206 (85%), Positives = 194/206 (94%)

Query: 60  KLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTH 119
           KLLFRQ FE ESST+TYLLADV+HPDKPALLIDPVDKTVDRDL +I ELGLKL+YAMNTH
Sbjct: 2   KLLFRQLFENESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTH 61

Query: 120 VHADHVTGTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGC 179
           VHADHVTGTGL+K+K+PGVKS+ISKASGSKADL +E GDKVS GD++LEVRATPGHT GC
Sbjct: 62  VHADHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGC 121

Query: 180 VTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYP 239
           VTYV+GEG DQPQPRMAFTGDA+LIRGCGRTDFQ GSS QLY+SVHSQIFTLPKDTLIYP
Sbjct: 122 VTYVTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKDTLIYP 181

Query: 240 AHDYKGFTVSTVGEEIQYNPRLTKDE 265
           AHDYKGF VSTVGEE+Q+NPRLTKD+
Sbjct: 182 AHDYKGFEVSTVGEEMQHNPRLTKDK 207
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Length = 298 Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466 Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474 Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Length = 260 Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Length = 207 Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Length = 258 Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Length = 254 Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Length = 311 Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Length = 294 Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Length = 263 Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Length = 201 Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Length = 289 Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Length = 269 Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Length = 228 Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Length = 303 Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Length = 303 Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Length = 261 Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Length = 223 Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Length = 219 Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Length = 232 Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Length = 265 Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Length = 227 Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Length = 221 Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Length = 270 Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Length = 414 Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Length = 317 Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Length = 404 Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Length = 402 Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Length = 398 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 100.0
4efz_A298 Metallo-beta-lactamase family protein; structural 100.0
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 100.0
3r2u_A 466 Metallo-beta-lactamase family protein; structural 100.0
1xm8_A254 Glyoxalase II; structural genomics, protein struct 100.0
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 100.0
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 100.0
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 100.0
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 100.0
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 100.0
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.95
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 99.95
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 99.95
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.95
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.95
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.95
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 99.95
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 99.95
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 99.94
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 99.94
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 99.94
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 99.94
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 99.94
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 99.93
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 99.93
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 99.93
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 99.93
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 99.93
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 99.93
4dik_A 410 Flavoprotein; TM0755, electron transport, DI-iron 99.91
2p97_A201 Hypothetical protein; putative metal-dependent hyd 99.91
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.91
2ohh_A 404 Type A flavoprotein FPRA; beta-lactamase like doma 99.91
3esh_A280 Protein similar to metal-dependent hydrolase; stru 99.9
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 99.9
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactama 99.9
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.89
1ycg_A 398 Nitric oxide reductase; DIIRON site, oxidoreductas 99.89
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.89
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.89
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 99.88
1ztc_A221 Hypothetical protein TM0894; structural genomics, 99.88
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.87
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 99.75
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.73
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ ch 99.69
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.68
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 99.66
3iek_A 431 Ribonuclease TTHA0252; metallo beta lactamase fold 99.65
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 99.63
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 99.6
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 99.57
2ycb_A 636 Beta-CAsp RNAse, cleavage and polyadenylation spec 99.55
2az4_A 429 Hypothetical protein EF2904; structural genomics, 99.55
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 99.54
3af5_A 651 Putative uncharacterized protein PH1404; archaeal 99.53
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 99.53
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.51
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 99.43
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 99.42
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 99.41
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.36
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 99.34
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 99.31
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 99.3
3zwf_A 368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 99.3
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.27
4b87_A 367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.24
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.2
3zdk_A 336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.17
3h3e_A267 Uncharacterized protein TM1679; structural genomic 99.01
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=6.9e-39  Score=278.65  Aligned_cols=221  Identities=81%  Similarity=1.232  Sum_probs=191.6

Q ss_pred             CeEEEEEEeCCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCe
Q 023537           60 KLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVK  139 (281)
Q Consensus        60 ~~~~~~~~~~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~  139 (281)
                      +|.|++++....++++|+|.++...+++++|||||....+.+.+.+++.+.++++||+||.|+||++|+..|.+.+++++
T Consensus         2 ~m~~~~~~~~~~~~~~yli~~~~~~~~~~ilID~g~~~~~~~~~~l~~~g~~i~~Il~TH~H~DH~gg~~~l~~~~~~~~   81 (245)
T 2gcu_A            2 KLLFRQLFENESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVK   81 (245)
T ss_dssp             CEEEEEEEETTTTEEEEEEEETTSTTCEEEEESCBGGGHHHHHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHSTTCE
T ss_pred             CcEEEEeecCCCceEEEEEEcCCCCCCcEEEEeCCCchHHHHHHHHHHCCCeeeEEEeCCCChhhhhhHHHHHHhCCCCe
Confidence            48899999999999999999830001579999999755678889999999999999999999999999999998778999


Q ss_pred             EEecccCCCCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCCCCHHH
Q 023537          140 SIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQ  219 (281)
Q Consensus       140 i~~~~~~~~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~  219 (281)
                      +++++......+..+.+|+.+.+|+.+++++++||||+|+++|+++..+...+.++||+||+++..++++.+++.++..+
T Consensus        82 v~~~~~~~~~~~~~~~~g~~~~~g~~~i~v~~tpGHt~g~~~~~~~~~~~~~~~~~lftGD~~~~~~~~~~d~~~~~~~~  161 (245)
T 2gcu_A           82 SVISKASGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQ  161 (245)
T ss_dssp             EEEEGGGCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEEETTSBTTBCCCCSSTTCCHHH
T ss_pred             EEecccccccCCEEcCCCCEEEECCEEEEEEECCCCCCCCEEEEECCccccccccEEEECCccccCCccCCCCCCCCHHH
Confidence            99998776556778999999999999999999999999999999965210112479999999999888888888889999


Q ss_pred             HHHHHHHHHhcCCCceEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHH-HHHhcCCCCCCC
Q 023537          220 LYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLV-WLMLNSFISMDY  280 (281)
Q Consensus       220 ~~~sl~~~l~~l~~~~~v~PgHG~~~~~~~~~~~~~~~n~~l~~~~~~~-~~~~~~~~~~~~  280 (281)
                      |++|+++++..|+++++|+||||+.+...++++.++++||+++...++| ..|.++.+|.|-
T Consensus       162 ~~~sl~~~l~~l~~~~~v~pgHg~~~~~~sti~~e~~~n~~l~~~~~~f~~~~~~~~~~~p~  223 (245)
T 2gcu_A          162 LYESVHSQIFTLPKDTLIYPAHDYKGFEVSTVGEEMQHNPRLTKDKETFKTIMSNLNLSYPK  223 (245)
T ss_dssp             HHHHHHHHTTTSCTTCEEEESBCSSSCCCEEHHHHHHHCTTTTSCHHHHHHHHHTCCCCCCT
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCCCcCHHHHHhhCcccCCCHHHHHHHHHhCCCCCCh
Confidence            9999955899999888999999987777899999999999999888888 888899998873
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 281
d1qh5a_260 d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathio 2e-26
d1xm8a_254 d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathio 3e-26
d2qeda1251 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglut 1e-21
d1jjta_220 d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomo 3e-16
d2gmna1264 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Br 1e-15
d2p97a1200 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 1e-14
d1k07a_262 d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoriba 3e-14
d2aioa1266 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xa 1e-12
d2q0ia1298 d.157.1.14 (A:1-298) Quinolone signal response pro 3e-12
d1znba_230 d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroi 2e-11
d1mqoa_221 d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus 4e-11
d1m2xa_219 d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseob 4e-11
d1ko3a_230 d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomo 3e-10
d1vmea2250 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, 6e-09
d1ycga2249 d.157.1.3 (A:2-250) Nitric oxide reductase N-termi 2e-08
d1ztca1207 d.157.1.11 (A:1-207) Hypothetical protein TM0894 { 3e-08
d1x8ha_228 d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromona 6e-06
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 260 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Glyoxalase II (hydroxyacylglutathione hydrolase)
domain: Glyoxalase II (hydroxyacylglutathione hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-26
 Identities = 60/227 (26%), Positives = 90/227 (39%), Gaps = 39/227 (17%)

Query: 74  YTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133
           Y YL+ D     K A ++DPV     + ++  ++ G+KL   + TH H DH  G   +  
Sbjct: 13  YMYLVID--DETKEAAIVDPVQ--PQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVK 68

Query: 134 KVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQP 193
              G+K              + H   +  G L ++  ATP HT G + Y     P   +P
Sbjct: 69  LESGLKVYGGDDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFV-SKPGGSEP 127

Query: 194 RMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKG-------- 245
              FTGD L + GC    F  G++ ++ K++   +  LP DT +Y  H+Y          
Sbjct: 128 PAVFTGDTLFVAGC--GKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFARH 185

Query: 246 -----------------------FTV-STVGEEIQYNPRLTKDEVLV 268
                                   TV ST+ EE  YNP +   E  V
Sbjct: 186 VEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMRVREKTV 232
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 254 Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Length = 251 Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Length = 220 Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Length = 264 Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Length = 200 Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Length = 262 Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Length = 266 Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Length = 298 Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Length = 230 Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Length = 221 Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Length = 219 Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Length = 230 Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250 Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 249 Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Length = 207 Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Length = 228 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query281
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 100.0
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 100.0
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 100.0
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 99.95
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 99.94
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.94
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 99.93
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 99.92
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 99.92
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 99.92
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 99.92
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 99.91
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 99.91
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 99.91
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 99.91
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 99.91
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 99.86
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 99.85
d2cfua2 505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 99.85
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 99.83
d2dkfa1 431 Putative RNA-degradation protein TTHA0252 {Thermus 99.63
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast 99.52
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.5
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 99.48
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.48
d2i7ta1 451 Cleavage and polyadenylation specificity factor su 99.41
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 98.97
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 98.95
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 98.86
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 98.7
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 98.38
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Glyoxalase II (hydroxyacylglutathione hydrolase)
domain: Glyoxalase II (hydroxyacylglutathione hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-37  Score=267.35  Aligned_cols=190  Identities=29%  Similarity=0.486  Sum_probs=165.6

Q ss_pred             CCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccCCC
Q 023537           69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS  148 (281)
Q Consensus        69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~  148 (281)
                      .-..+++|||.+..  ++++++||||.  .+.+++.+++.+.++.+|++||.|+||++|+..+.+.++...++.......
T Consensus         8 ~l~DNy~Yli~d~~--t~~a~vIDP~~--~~~i~~~l~~~~~~l~~Il~TH~H~DHi~g~~~l~~~~~~~~~~~~~~~~~   83 (260)
T d1qh5a_           8 ALTDNYMYLVIDDE--TKEAAIVDPVQ--PQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDDRIG   83 (260)
T ss_dssp             ETTTEEEEEEEETT--TTEEEEESCSS--HHHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHSTTCEEEESCTTST
T ss_pred             eecceEEEEEEECC--CCEEEEEeCCC--CHHHHHHHHHCCCeEEEEEcCCCChhhhccchhhhccccCccccccccccc
Confidence            35667899999853  57899999984  688999999999999999999999999999999999997888888777777


Q ss_pred             CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCCCCHHHHHHHHHHHH
Q 023537          149 KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQI  228 (281)
Q Consensus       149 ~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~~~sl~~~l  228 (281)
                      .....+.+|+.+.+|+.++++++|||||+||+||++++.+ ....+++||||++|.+++++.  +.++.+++++|+++++
T Consensus        84 ~~~~~~~~gd~~~~g~~~~~vi~TPGHT~gsv~~~~~~~~-~~~~~~lFtGDtLF~gg~Gr~--~~g~~~~l~~si~~~l  160 (260)
T d1qh5a_          84 ALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPG-GSEPPAVFTGDTLFVAGCGKF--YEGTADEMCKALLEVL  160 (260)
T ss_dssp             TCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEECSS-SSSCCEEEEETTEETTEECCC--TTCCHHHHHHHHHTTT
T ss_pred             cccccccccccceeeeeeeEEEEecCCCCccEEEEEcCCC-CcccceEEecCccccCccccc--ccCchHHhhhhhhhHH
Confidence            7889999999999999999999999999999999997631 134569999999999999995  5789999999998889


Q ss_pred             hcCCCceEEEcCCCCCC--------------------------------CCcccHHHHHHhCCCCcCCH
Q 023537          229 FTLPKDTLIYPAHDYKG--------------------------------FTVSTVGEEIQYNPRLTKDE  265 (281)
Q Consensus       229 ~~l~~~~~v~PgHG~~~--------------------------------~~~~~~~~~~~~n~~l~~~~  265 (281)
                      ..|+++++|+|||+|..                                ...++++.|+++|||||...
T Consensus       161 ~~Lp~~t~vypGH~y~~~n~~f~~~~~~~n~~l~~~~~~v~~~~~~~~~tvpstl~~E~~~NPflr~~~  229 (260)
T d1qh5a_         161 GRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMRVRE  229 (260)
T ss_dssp             TTSCTTCEEEESBCCHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCCCCCEEHHHHHHHCTTTTTTS
T ss_pred             hcCCcccEEeeccccCCCcHHHHHHhhhhhhhHHHHHHHHHHHHHCCCCcCCccHHHHHhhChhhcCCC
Confidence            99999999999999842                                13469999999999998433
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure